Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 144 of 203
Found at i:45793792 original size:19 final size:21
Alignment explanation
Indices: 45793768--45793814 Score: 71
Period size: 19 Copynumber: 2.3 Consensus size: 21
45793758 TAAAATATAC
45793768 TAGTTTAAG-TTTTTA-GTTT
1 TAGTTTAAGTTTTTTATGTTT
45793787 TAGTTTAAGTTTTTTATGTTT
1 TAGTTTAAGTTTTTTATGTTT
45793808 TAAGTTT
1 T-AGTTT
45793815 TTTATGTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.36
20 6 0.24
21 5 0.20
22 5 0.20
ACGTcount: A:0.21, C:0.00, G:0.15, T:0.64
Consensus pattern (21 bp):
TAGTTTAAGTTTTTTATGTTT
Found at i:45793824 original size:15 final size:15
Alignment explanation
Indices: 45793784--45793825 Score: 68
Period size: 16 Copynumber: 2.8 Consensus size: 15
45793774 AAGTTTTTAG
45793784 TTTTA-GTTTAAGTT
1 TTTTATGTTTAAGTT
45793798 TTTTATGTTTTAAGTT
1 TTTTATG-TTTAAGTT
45793814 TTTTATGTTTAA
1 TTTTATGTTTAA
45793826 AATATATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.19
15 6 0.23
16 15 0.58
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (15 bp):
TTTTATGTTTAAGTT
Found at i:45793859 original size:22 final size:21
Alignment explanation
Indices: 45793812--45793877 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 21
45793802 ATGTTTTAAG
* * *
45793812 TTTTTTATGTTTAAAATATATA
1 TTTTTTATGTTT-AAGTTTTTA
45793834 TTTTTTATGTTTAAGTTTTTA
1 TTTTTTATGTTTAAGTTTTTA
* * *
45793855 CTTTTTA-GTTTTAGTTTTCA
1 TTTTTTATGTTTAAGTTTTTA
45793875 TTT
1 TTT
45793878 CCCAGACACT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
20 13 0.35
21 12 0.32
22 12 0.32
ACGTcount: A:0.23, C:0.03, G:0.08, T:0.67
Consensus pattern (21 bp):
TTTTTTATGTTTAAGTTTTTA
Found at i:45795870 original size:31 final size:31
Alignment explanation
Indices: 45795834--45795892 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
45795824 ACACTTTTCA
* *
45795834 AATAAATTTTTTGAATCAAACGCAGTTTTTG
1 AATAAACTTTTTGAATCAAACACAGTTTTTG
*
45795865 AATAAACTTTTTGAATCGAACACAGTTT
1 AATAAACTTTTTGAATCAAACACAGTTT
45795893 CTTCTCAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (31 bp):
AATAAACTTTTTGAATCAAACACAGTTTTTG
Found at i:45797846 original size:17 final size:17
Alignment explanation
Indices: 45797820--45797866 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
45797810 TATTTAATTC
* *
45797820 TCAAACTAAACTAAAAT
1 TCAAAATAAAATAAAAT
45797837 TCAAAATAAAATAAAA-
1 TCAAAATAAAATAAAAT
45797853 T--AAATAAAATAAAA
1 TCAAAATAAAATAAAA
45797867 ATAAATGAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 13 0.46
16 1 0.04
17 14 0.50
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.21
Consensus pattern (17 bp):
TCAAAATAAAATAAAAT
Found at i:45797847 original size:5 final size:5
Alignment explanation
Indices: 45797839--45797871 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
45797829 ACTAAAATTC
45797839 AAAAT AAAAT AAAAT -AAAT AAAAT AAAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAA
45797872 TGAGGGTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
5 17 0.65
6 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:45797859 original size:14 final size:15
Alignment explanation
Indices: 45797840--45797872 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
45797830 CTAAAATTCA
45797840 AAATAAAAT-AAAAT
1 AAATAAAATAAAAAT
45797854 AAATAAAATAAAAAT
1 AAATAAAATAAAAAT
45797869 AAAT
1 AAAT
45797873 GAGGGTTGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (15 bp):
AAATAAAATAAAAAT
Found at i:45801534 original size:23 final size:23
Alignment explanation
Indices: 45801484--45801534 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
45801474 ACATACTCAC
** *
45801484 TAAATAATTCTAAATATTATCAC
1 TAAATAATTCTAAATATTAAAAA
45801507 TAAATAATTCTAAAT-TTAAAAA
1 TAAATAATTCTAAATATTAAAAA
45801529 TCAAAT
1 T-AAAT
45801535 TTAAACTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (23 bp):
TAAATAATTCTAAATATTAAAAA
Found at i:45809151 original size:18 final size:17
Alignment explanation
Indices: 45809123--45809157 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45809113 ATTATTAAGA
*
45809123 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45809140 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45809158 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45809248 original size:120 final size:120
Alignment explanation
Indices: 45809069--45809534 Score: 914
Period size: 120 Copynumber: 3.9 Consensus size: 120
45809059 TTATAATTAT
*
45809069 AGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
45809134 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
*
45809189 AGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
45809254 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
45809309 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
45809374 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
45809429 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
1 AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
45809494 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
45809535 TAAATATGAT
Statistics
Matches: 345, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 345 1.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
AGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAA
TTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTAC
Found at i:45809271 original size:18 final size:17
Alignment explanation
Indices: 45809243--45809277 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45809233 ATTATTAAGA
*
45809243 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45809260 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45809278 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45809391 original size:18 final size:17
Alignment explanation
Indices: 45809363--45809397 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45809353 ATTATTAAGA
*
45809363 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45809380 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45809398 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45809511 original size:18 final size:17
Alignment explanation
Indices: 45809483--45809517 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45809473 ATTATTAAGA
*
45809483 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45809500 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45809518 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45809731 original size:44 final size:45
Alignment explanation
Indices: 45809682--45809772 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
45809672 ACCTCTATTC
* * *
45809682 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
45809726 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
45809771 CA
1 CA
45809773 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:45809774 original size:16 final size:16
Alignment explanation
Indices: 45809753--45809821 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
45809743 GATTAGCTAT
45809753 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
45809769 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
45809786 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
45809802 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
45809818 TACA
1 TACA
45809822 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:45809795 original size:33 final size:32
Alignment explanation
Indices: 45809753--45809821 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
45809743 GATTAGCTAT
45809753 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
45809786 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
45809818 TACA
1 TACA
45809822 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:45809914 original size:26 final size:26
Alignment explanation
Indices: 45809876--45809926 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
45809866 TTCTTGGAAA
* *
45809876 GTGGGTGACCCTTTGTTGGCTTCTTG
1 GTGGGTAACCCTTCGTTGGCTTCTTG
*
45809902 GTGGGTAATCCTTCGTTGGCTTCTT
1 GTGGGTAACCCTTCGTTGGCTTCTT
45809927 AATTTGTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.06, C:0.20, G:0.31, T:0.43
Consensus pattern (26 bp):
GTGGGTAACCCTTCGTTGGCTTCTTG
Found at i:45811663 original size:5 final size:5
Alignment explanation
Indices: 45811653--45811688 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
45811643 AGCCATGCTC
*
45811653 ATTTT ATTTT ATTTT ATTTT ATTGTA ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATT-TT ATTTT ATTTT
45811689 TAGTAATGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 24 0.86
6 4 0.14
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (5 bp):
ATTTT
Found at i:45811694 original size:15 final size:16
Alignment explanation
Indices: 45811663--45811695 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
45811653 ATTTTATTTT
*
45811663 ATTTTATTTTATTGTA
1 ATTTTATTTTATAGTA
45811679 ATTTTATTTT-TAGTA
1 ATTTTATTTTATAGTA
45811694 AT
1 AT
45811696 GATATGTTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (16 bp):
ATTTTATTTTATAGTA
Found at i:45812576 original size:31 final size:30
Alignment explanation
Indices: 45812550--45812619 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
45812540 ACCTAAATAA
*
45812550 TATTTTTTT-TCTCAAGTTGGTACCTAAACT
1 TATTTTTTTGTCACAAG-TGGTACCTAAACT
*
45812580 TCTTTTTTTGTCACAAGTGGTACCTAAAC-
1 TATTTTTTTGTCACAAGTGGTACCTAAACT
*
45812609 TATTCTTTTGT
1 TATTTTTTTGT
45812620 TACTCATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.26
30 20 0.57
31 6 0.17
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.50
Consensus pattern (30 bp):
TATTTTTTTGTCACAAGTGGTACCTAAACT
Found at i:45812588 original size:30 final size:30
Alignment explanation
Indices: 45812552--45812609 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
45812542 CTAAATAATA
*
45812552 TTTTTTT-TCTCAAGTTGGTACCTAAACTTC
1 TTTTTTTGTCACAAG-TGGTACCTAAACTTC
45812582 TTTTTTTGTCACAAGTGGTACCTAAACT
1 TTTTTTTGTCACAAGTGGTACCTAAACT
45812610 ATTCTTTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (30 bp):
TTTTTTTGTCACAAGTGGTACCTAAACTTC
Found at i:45812755 original size:16 final size:17
Alignment explanation
Indices: 45812736--45812769 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
45812726 TTTTACATTA
45812736 TTCC-CTTTTTTTTCTT
1 TTCCTCTTTTTTTTCTT
*
45812752 TTCCTTTTTTTTTTCTT
1 TTCCTCTTTTTTTTCTT
45812769 T
1 T
45812770 CTCTTCCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (17 bp):
TTCCTCTTTTTTTTCTT
Found at i:45813587 original size:5 final size:5
Alignment explanation
Indices: 45813577--45813601 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
45813567 GAGCATTCGG
45813577 TCGAA TCGAA TCGAA TCGAA TCGAA
1 TCGAA TCGAA TCGAA TCGAA TCGAA
45813602 AATTTTCGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (5 bp):
TCGAA
Found at i:45814910 original size:30 final size:31
Alignment explanation
Indices: 45814865--45814924 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
45814855 GGAGGTGGGA
*
45814865 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
45814896 TGGG-AGGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
45814925 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:45815153 original size:9 final size:9
Alignment explanation
Indices: 45815139--45815175 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
45815129 TATAGTTTGA
45815139 TATTCGAAT
1 TATTCGAAT
45815148 TATTCGAAT
1 TATTCGAAT
*
45815157 TATTCGAGT
1 TATTCGAAT
45815166 TATTCGAAT
1 TATTCGAAT
45815175 T
1 T
45815176 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:45820063 original size:23 final size:24
Alignment explanation
Indices: 45820021--45820079 Score: 61
Period size: 23 Copynumber: 2.5 Consensus size: 24
45820011 ATTTGCTTTT
*
45820021 AGAAACAAGGAAAAATAAAA-GAGAA
1 AGAAAGAA-GAAAAATAAAACG-GAA
45820046 AGAAAGAAGAAAAA-AAAACTGGAA
1 AGAAAGAAGAAAAATAAAAC-GGAA
45820070 A-AAAGAAGAA
1 AGAAAGAAGAA
45820080 CCAAAATCGT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
23 13 0.42
24 10 0.32
25 8 0.26
ACGTcount: A:0.73, C:0.03, G:0.20, T:0.03
Consensus pattern (24 bp):
AGAAAGAAGAAAAATAAAACGGAA
Found at i:45821042 original size:100 final size:100
Alignment explanation
Indices: 45820886--45821070 Score: 289
Period size: 100 Copynumber: 1.9 Consensus size: 100
45820876 CAATGTCGAG
*
45820886 GAAACAAGATTCGTCGTCGTGACTTCAATCTATTCCACTACACCGCCAGGGAAGTAAGATCCGCC
1 GAAACAAGATCCGTCGTCGTGACTTCAATCTATTCCACTACACCGCCAGGGAAGTAAGATCCGCC
*
45820951 GTTCTGGCTTCAATCTTTTCAAATTGCAATGTTAA
66 ATTCTGGCTTCAATCTTTTCAAATTGCAATGTTAA
* * * * * *
45820986 GAAACCAGATCCGTTGTCGTGACTTCAATCTGTTCCACTACACCGCTAGGGGAGTAAGATCTGCC
1 GAAACAAGATCCGTCGTCGTGACTTCAATCTATTCCACTACACCGCCAGGGAAGTAAGATCCGCC
*
45821051 ATTGTGGCTTCAATCTTTTC
66 ATTCTGGCTTCAATCTTTTC
45821071 CACTGTAATG
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 76 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (100 bp):
GAAACAAGATCCGTCGTCGTGACTTCAATCTATTCCACTACACCGCCAGGGAAGTAAGATCCGCC
ATTCTGGCTTCAATCTTTTCAAATTGCAATGTTAA
Found at i:45821381 original size:88 final size:88
Alignment explanation
Indices: 45821268--45821758 Score: 725
Period size: 88 Copynumber: 5.6 Consensus size: 88
45821258 AAGATTGATG
* * * * * * *
45821268 TCTTCGATCTGCTTCGCTGCCAGTACAGGAAAGCAAGATCTGCCATTTTCGACCTACTCAACTGC
1 TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTAC
* *
45821333 TGCCCAAGGAGACAAGGCTAGTA
66 TGCCCAGGGAGACAAGGCTGGTA
* * * *
45821356 TCTTCGATCTGCTTTTCTGTCAGTACAAGAAGGCAAGATCTGCTATTTTCAACCTACTCTATTAC
1 TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTAC
* *
45821421 TGCCCAGTGAGACAAGGCTAGTA
66 TGCCCAGGGAGACAAGGCTGGTA
* *
45821444 TATTCGATCTGCTTCTCTGTTAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTAC
1 TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTAC
45821509 TGCCCAGGGAGACAAGGCTGGTA
66 TGCCCAGGGAGACAAGGCTGGTA
45821532 TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTAC
1 TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTAC
*
45821597 TGCCCAGGGCGACAAGGCTGGTA
66 TGCCCAGGGAGACAAGGCTGGTA
* *
45821620 -CTTTTGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGTTATTTTCAACCTACTCCACTA
1 TC-TTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTA
*
45821684 CTGCCCAGGGGGACAAGGCTGGTA
65 CTGCCCAGGGAGACAAGGCTGGTA
* * * *
45821708 -CTTTTGATCTGCTTCTCTGTCAGTACAGAAAGGCAAGATCTACTATCTTCA
1 TC-TTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCA
45821759 GTCTGCTCCA
Statistics
Matches: 372, Mismatches: 30, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
87 1 0.00
88 371 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.29
Consensus pattern (88 bp):
TCTTCGATCTGCTTCTCTGTCAGTACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTAC
TGCCCAGGGAGACAAGGCTGGTA
Found at i:45823095 original size:8 final size:8
Alignment explanation
Indices: 45823084--45823132 Score: 57
Period size: 8 Copynumber: 6.2 Consensus size: 8
45823074 TATTTTACAA
45823084 TTTTGATT
1 TTTTGATT
45823092 TTTTGA--
1 TTTTGATT
45823098 TTTTGATT
1 TTTTGATT
**
45823106 TTTTTTTAT
1 TTTTGAT-T
45823115 TTTTGATT
1 TTTTGATT
45823123 TTTTGATT
1 TTTTGATT
45823131 TT
1 TT
45823133 GTTTTTTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
6 6 0.18
8 22 0.65
9 6 0.18
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (8 bp):
TTTTGATT
Found at i:45823100 original size:14 final size:14
Alignment explanation
Indices: 45823083--45823146 Score: 76
Period size: 14 Copynumber: 4.4 Consensus size: 14
45823073 TTATTTTACA
45823083 ATTTTGATTTTTTG
1 ATTTTGATTTTTTG
*
45823097 ATTTTGATTTTTTTTT
1 ATTTTGA--TTTTTTG
45823113 ATTTTTGATTTTTTG
1 A-TTTTGATTTTTTG
45823128 ATTTTG-TTTTTTAG
1 ATTTTGATTTTTT-G
45823142 ATTTT
1 ATTTT
45823147 TCTTTGATTG
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
13 6 0.14
14 18 0.41
15 7 0.16
16 7 0.16
17 6 0.14
ACGTcount: A:0.14, C:0.00, G:0.11, T:0.75
Consensus pattern (14 bp):
ATTTTGATTTTTTG
Found at i:45823117 original size:23 final size:25
Alignment explanation
Indices: 45823091--45823138 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
45823081 CAATTTTGAT
45823091 TTTTTGA-TTTTGATTTT-TTTTTA
1 TTTTTGATTTTTGATTTTGTTTTTA
45823114 TTTTTGATTTTTTGATTTTGTTTTT
1 TTTTTGA-TTTTTGATTTTGTTTTT
45823139 TAGATTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 7 0.32
25 10 0.45
26 5 0.23
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.79
Consensus pattern (25 bp):
TTTTTGATTTTTGATTTTGTTTTTA
Found at i:45823146 original size:8 final size:7
Alignment explanation
Indices: 45823084--45823147 Score: 50
Period size: 6 Copynumber: 9.6 Consensus size: 7
45823074 TATTTTACAA
45823084 TTTTGATT
1 TTTTGA-T
45823092 TTTTGA-
1 TTTTGAT
45823098 TTTTGA-
1 TTTTGAT
45823104 TTTT--T
1 TTTTGAT
45823109 TTTT-AT
1 TTTTGAT
45823115 TTTTGATT
1 TTTTGA-T
45823123 TTTTGA-
1 TTTTGAT
*
45823129 TTTTGTT
1 TTTTGAT
45823136 TTTTAGAT
1 TTTT-GAT
45823144 TTTT
1 TTTT
45823148 CTTTGATTGA
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
5 4 0.08
6 20 0.42
7 5 0.10
8 19 0.40
ACGTcount: A:0.12, C:0.00, G:0.11, T:0.77
Consensus pattern (7 bp):
TTTTGAT
Found at i:45823846 original size:12 final size:12
Alignment explanation
Indices: 45823829--45823855 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45823819 TAATAAATAT
45823829 AAAAGAATATAC
1 AAAAGAATATAC
45823841 AAAAGAATATAC
1 AAAAGAATATAC
45823853 AAA
1 AAA
45823856 TTTATGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.15
Consensus pattern (12 bp):
AAAAGAATATAC
Found at i:45823973 original size:25 final size:25
Alignment explanation
Indices: 45823920--45823985 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
45823910 AAGAAAATCC
* *
45823920 AAAAGAATGAAAGAATAATTATTCG
1 AAAAGAATGAAAGAATAATTACTCA
*
45823945 AAAAGAATGAAAGAAT-ATTGGCTCA
1 AAAAGAATGAAAGAATAATT-ACTCA
45823970 AAAATGAATGCAAAGA
1 AAAA-GAATG-AAAGA
45823986 TGTATTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.09
25 22 0.63
26 5 0.14
27 5 0.14
ACGTcount: A:0.56, C:0.06, G:0.18, T:0.20
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:45826410 original size:16 final size:16
Alignment explanation
Indices: 45826385--45826419 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
45826375 TTTTATAATG
45826385 AAATGCCATGCAGTCA
1 AAATGCCATGCAGTCA
* *
45826401 AAATGTCATGCATTCA
1 AAATGCCATGCAGTCA
45826417 AAA
1 AAA
45826420 CAAAACACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.23
Consensus pattern (16 bp):
AAATGCCATGCAGTCA
Found at i:45828373 original size:511 final size:512
Alignment explanation
Indices: 45827412--45828436 Score: 1989
Period size: 511 Copynumber: 2.0 Consensus size: 512
45827402 CACGACAAAT
45827412 TAAGTTCCCGAAAATGATTTTTATACTTATGCATTTTGAATAACGAATATTCTCGGTTATTTGGA
1 TAAGTTCCCGAAAATGATTTTTATACTTATGCATTTTGAATAACGAATATTCTCGGTTATTTGGA
45827477 ATTAATAAAGAAAATCAGAACCCAATACGTTAAGGCTCAATTTCCTCGAAAACCCCTAACTTTGA
66 ATTAATAAAGAAAATCAGAACCCAATACGTTAAGGCTCAATTTCCTCGAAAACCCCTAACTTTGA
45827542 ATATCGTTTTTATTTTAAAAGCCTATGACAAAATCAAAATATATTTTTAAAGGATATGTTTTAAA
131 ATATCGTTTTTATTTTAAAAGCCTATGACAAAATCAAAATATATTTTTAAAGGATATGTTTTAAA
*
45827607 AAATGTGAATGCAATATGAAACAAATATTTTAATTTATATTATATATGCATATGTATTTACAAAA
196 AAATGTGAATGCAATATGAAACAAATATTTTAATTTAAATTATATATGCATATGTATTTACAAAA
**
45827672 TAAAATATGGTATATAAGTAAATTTTAAAAAATATGTATATGCATATATTAAAGCATATATAATA
261 TAAAATATGACATATAAGTAAATTTTAAAAAATATGTATATGCATATATTAAAGCATATATAATA
45827737 AAGTTATAAAAATAAAAAATAAAATATGTATAGGTATAGGTATCTAAAAAAAATATAGAAATAAA
326 AAGTTATAAAAATAAAAAATAAAATATGTATAGGTATAGGTATCTAAAAAAAATATAGAAATAAA
45827802 TACAAATAAATAAAATAAAAATATAAACAAAATACATTAATAAATTATGAATATATATATGTTTA
391 TACAAATAAATAAAATAAAAATATAAACAAAATACATTAATAAATTATGAATATATATATGTTTA
45827867 TATATAAGAAAGATG-AGAAAAAAATGTATATTTATGATCATTTTGAATAATGTATG
456 TATATAAGAAAGATGCAGAAAAAAATGTATATTTATGATCATTTTGAATAATGTATG
45827923 TAAGTTCCCGAAAATGATTTTTATACTTATGCATTTTGAATAACGAATATTCTCGGTTATTTGGA
1 TAAGTTCCCGAAAATGATTTTTATACTTATGCATTTTGAATAACGAATATTCTCGGTTATTTGGA
*
45827988 ATTAATAAAGAAAATCAGAACCCAATACGTTAAGGCTCAATTTCCTCGAAAACCCTTAACTTTGA
66 ATTAATAAAGAAAATCAGAACCCAATACGTTAAGGCTCAATTTCCTCGAAAACCCCTAACTTTGA
45828053 ATATCGTTTTTATTTTAAAAGCCTATGACAAAATCAAAATATATTTTTAAAGGATATGTTTTAAA
131 ATATCGTTTTTATTTTAAAAGCCTATGACAAAATCAAAATATATTTTTAAAGGATATGTTTTAAA
45828118 AAATGTGAATGCAATATGAAACAAATATTTTAATTTAAATTATATATGCATATGTATTTACAAAA
196 AAATGTGAATGCAATATGAAACAAATATTTTAATTTAAATTATATATGCATATGTATTTACAAAA
*
45828183 TAAAATATGACATATAAGTACATTTTAAAAAATATGTATATGCATATATTAAAGCATATATAATA
261 TAAAATATGACATATAAGTAAATTTTAAAAAATATGTATATGCATATATTAAAGCATATATAATA
45828248 AAGTTATAAAAATAAAAAATAAAATATGTATAGGTATAGGTATCTAAAAAAAATATAGAAATAAA
326 AAGTTATAAAAATAAAAAATAAAATATGTATAGGTATAGGTATCTAAAAAAAATATAGAAATAAA
45828313 TACAAATAAATAAAATAAAAATATAAACAAAATACATTAATAAATTATGAATATATATATGTTTA
391 TACAAATAAATAAAATAAAAATATAAACAAAATACATTAATAAATTATGAATATATATATGTTTA
*
45828378 TATATAAGAAAGATGCGGAAAAAAATGTATATTTATGATCATTTTGAATAATGTATG
456 TATATAAGAAAGATGCAGAAAAAAATGTATATTTATGATCATTTTGAATAATGTATG
45828435 TA
1 TA
45828437 TATGTATATA
Statistics
Matches: 507, Mismatches: 6, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
511 465 0.92
512 42 0.08
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (512 bp):
TAAGTTCCCGAAAATGATTTTTATACTTATGCATTTTGAATAACGAATATTCTCGGTTATTTGGA
ATTAATAAAGAAAATCAGAACCCAATACGTTAAGGCTCAATTTCCTCGAAAACCCCTAACTTTGA
ATATCGTTTTTATTTTAAAAGCCTATGACAAAATCAAAATATATTTTTAAAGGATATGTTTTAAA
AAATGTGAATGCAATATGAAACAAATATTTTAATTTAAATTATATATGCATATGTATTTACAAAA
TAAAATATGACATATAAGTAAATTTTAAAAAATATGTATATGCATATATTAAAGCATATATAATA
AAGTTATAAAAATAAAAAATAAAATATGTATAGGTATAGGTATCTAAAAAAAATATAGAAATAAA
TACAAATAAATAAAATAAAAATATAAACAAAATACATTAATAAATTATGAATATATATATGTTTA
TATATAAGAAAGATGCAGAAAAAAATGTATATTTATGATCATTTTGAATAATGTATG
Found at i:45828597 original size:18 final size:16
Alignment explanation
Indices: 45828554--45828601 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
45828544 AAACTAAGAA
*
45828554 AATATAATAATAATAAT
1 AATATAATAA-GATAAT
45828571 AATAT-ATAAGATAAGT
1 AATATAATAAGATAA-T
45828587 ATATATAATAAGATA
1 A-ATATAATAAGATA
45828602 CATATGCGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 4 0.15
16 6 0.22
17 9 0.33
18 8 0.30
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.33
Consensus pattern (16 bp):
AATATAATAAGATAAT
Found at i:45838948 original size:26 final size:26
Alignment explanation
Indices: 45838891--45838951 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
45838881 TTACCTCAAA
*
45838891 TAAAATTTTGACAATTTTACCCTTGG
1 TAAAATTTTGACAATTTTACCCTAGG
* * **
45838917 TTAAATTTTGACGATTTTGGCCTAGG
1 TAAAATTTTGACAATTTTACCCTAGG
45838943 TAAAATTTT
1 TAAAATTTT
45838952 AAGAAAATAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (26 bp):
TAAAATTTTGACAATTTTACCCTAGG
Found at i:45846635 original size:6 final size:6
Alignment explanation
Indices: 45846621--45846660 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
45846611 AAGATTTCAA
* *
45846621 ATTTCC ATTTTC ATTTAC ATTTCC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
45846661 TTAGAAACCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.20, C:0.25, G:0.00, T:0.55
Consensus pattern (6 bp):
ATTTCC
Found at i:45848589 original size:29 final size:29
Alignment explanation
Indices: 45848550--45848613 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
45848540 CCACCAAGCA
45848550 TTCCTT-TAACAGAGATAACCACAAAGGC
1 TTCCTTATAACAGAGATAACCACAAAGGC
* * *
45848578 TTTCTTATAACAGAGATCACCATAAAGGC
1 TTCCTTATAACAGAGATAACCACAAAGGC
45848607 TTCCTTA
1 TTCCTTA
45848614 CTGAAACTGC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 5 0.16
29 26 0.84
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.28
Consensus pattern (29 bp):
TTCCTTATAACAGAGATAACCACAAAGGC
Found at i:45848714 original size:26 final size:26
Alignment explanation
Indices: 45848674--45848724 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
45848664 ACTTTTGACT
* *
45848674 GAGATAGCCATAAAGGCATCCTTTTA
1 GAGATAACCACAAAGGCATCCTTTTA
*
45848700 GAGATAACCACAAAGGCATCTTTTT
1 GAGATAACCACAAAGGCATCCTTTT
45848725 TTAGAAATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (26 bp):
GAGATAACCACAAAGGCATCCTTTTA
Found at i:45853743 original size:35 final size:35
Alignment explanation
Indices: 45853693--45853763 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
45853683 TTTTGTATAA
*
45853693 TGGTGAGAAAATAACTTTTGCATGTCGTTGGAAAG
1 TGGTGAGAAAATAACTTTTGCATGTAGTTGGAAAG
*
45853728 TGGTGAGAAAGTAACTTTTGCATGTAGTTGGAAAG
1 TGGTGAGAAAATAACTTTTGCATGTAGTTGGAAAG
45853763 T
1 T
45853764 TAAAGTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.31, C:0.07, G:0.30, T:0.32
Consensus pattern (35 bp):
TGGTGAGAAAATAACTTTTGCATGTAGTTGGAAAG
Found at i:45864146 original size:126 final size:126
Alignment explanation
Indices: 45863912--45864415 Score: 909
Period size: 126 Copynumber: 4.0 Consensus size: 126
45863902 CAAACATCAA
*
45863912 TGTGTTTTGTTCTCTCATGAAACATTTGATCTTTTGTAAGGAAGATGGCACTCTGACTGTCACAA
1 TGTGTTTTGTTCTCTCATGAAACATTTGATCTTTTGTAAGGAAGATGGCACTCTGACTATCACAA
*
45863977 AATACTGTATTGATTTGAAGGTCTTCATTGAGTTCACTCAAGAGTCCCTTCAACCAAATAG
66 AATACTGTATTGATTTGAAGGTCTTCATTGAGTTCACTAAAGAGTCCCTTCAACCAAATAG
* * * *
45864038 TGTGTTTTTTTCTCTCATGAAACATTTGATCTTTTGTAATGAAGATGGCACTCTAACAATCACAA
1 TGTGTTTTGTTCTCTCATGAAACATTTGATCTTTTGTAAGGAAGATGGCACTCTGACTATCACAA
*
45864103 AATACTGTATTGATTTGAAGGTCTTCATTGAGTCCACTAAAGAGTCCCTTCAACCAAATAG
66 AATACTGTATTGATTTGAAGGTCTTCATTGAGTTCACTAAAGAGTCCCTTCAACCAAATAG
*
45864164 TGTGTTTTGTTCTCTCATGAAACATTTGATCTTTTGTAAGGAAGATGACACTCTGACTATCACAA
1 TGTGTTTTGTTCTCTCATGAAACATTTGATCTTTTGTAAGGAAGATGGCACTCTGACTATCACAA
45864229 AATACTGTATTGATTTGAAGGTCTTCATTGAGTTCACTAAAGAGTCCCTTCAACCAAATAG
66 AATACTGTATTGATTTGAAGGTCTTCATTGAGTTCACTAAAGAGTCCCTTCAACCAAATAG
* *
45864290 TGTGTTTTGTTCTCTCATGAAACATTTGATCTTTTGTAAGGAAGATGGCACTCTGTCTGTCACAA
1 TGTGTTTTGTTCTCTCATGAAACATTTGATCTTTTGTAAGGAAGATGGCACTCTGACTATCACAA
*
45864355 AATACTGTATTGATTTGAAGGTCTTCATTGAGTTTACTAAAGAGTCCCTTCAACCAAATAG
66 AATACTGTATTGATTTGAAGGTCTTCATTGAGTTCACTAAAGAGTCCCTTCAACCAAATAG
45864416 CTTCTTTACA
Statistics
Matches: 361, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
126 361 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (126 bp):
TGTGTTTTGTTCTCTCATGAAACATTTGATCTTTTGTAAGGAAGATGGCACTCTGACTATCACAA
AATACTGTATTGATTTGAAGGTCTTCATTGAGTTCACTAAAGAGTCCCTTCAACCAAATAG
Found at i:45870189 original size:21 final size:21
Alignment explanation
Indices: 45870165--45870206 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
45870155 GGATGAATGA
45870165 ATTAAAAAATGAATTTGGTGT
1 ATTAAAAAATGAATTTGGTGT
45870186 ATTAAAAAATGAATTTGGTGT
1 ATTAAAAAATGAATTTGGTGT
45870207 TGTTTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (21 bp):
ATTAAAAAATGAATTTGGTGT
Found at i:45870429 original size:20 final size:21
Alignment explanation
Indices: 45870388--45870429 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
45870378 AAGCTACATC
* *
45870388 AATCCAAACAACGAAACAAAA
1 AATCAAAACAACAAAACAAAA
45870409 AATCAAAACAACAAAACAAAA
1 AATCAAAACAACAAAACAAAA
45870430 GTCAAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.71, C:0.21, G:0.02, T:0.05
Consensus pattern (21 bp):
AATCAAAACAACAAAACAAAA
Found at i:45871467 original size:15 final size:17
Alignment explanation
Indices: 45871447--45871479 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
45871437 TAGTATAATA
45871447 ATAAATT-T-TTATTTG
1 ATAAATTATGTTATTTG
45871462 ATAAATTATGTTATTTG
1 ATAAATTATGTTATTTG
45871479 A
1 A
45871480 ATGAGTAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 1 0.06
17 8 0.50
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (17 bp):
ATAAATTATGTTATTTG
Found at i:45876369 original size:97 final size:97
Alignment explanation
Indices: 45876203--45876384 Score: 303
Period size: 97 Copynumber: 1.9 Consensus size: 97
45876193 CAGGCCCATT
*
45876203 TGAAAAGTTACACTTTGTGTGAGTATTCCTCAGTATTCAATGTAATTCTATATAGTTCAACGGGT
1 TGAAAAGGTACACTTTGTGTGAGTATTCCTCAGTATTCAATGTAATTCTATATAGTTCAACGGGT
*
45876268 AAGTAAAGTTTAATGGAAAGGTTACGATTATA
66 AAGTAAAGGTTAATGGAAAGGTTACGATTATA
* * *
45876300 TGAAAAGGTACACTTTGTGTGAGTATTCCTGAGTA-TCTGATGTAATTCTATATGGTTCAACGGG
1 TGAAAAGGTACACTTTGTGTGAGTATTCCTCAGTATTC-AATGTAATTCTATATAGTTCAACGGG
45876364 TAAGTAAAGGTTAATGGAAAG
65 TAAGTAAAGGTTAATGGAAAG
45876385 ACATATGAAA
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
96 2 0.03
97 77 0.97
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.35
Consensus pattern (97 bp):
TGAAAAGGTACACTTTGTGTGAGTATTCCTCAGTATTCAATGTAATTCTATATAGTTCAACGGGT
AAGTAAAGGTTAATGGAAAGGTTACGATTATA
Found at i:45879014 original size:73 final size:74
Alignment explanation
Indices: 45878921--45879076 Score: 242
Period size: 73 Copynumber: 2.1 Consensus size: 74
45878911 GCATCTCTTC
* * *
45878921 TTTGCTCCAGGGTTCTCATCAATGGCCACACATTTACCTTTTCCCTTATTAAATCTTTGATATCC
1 TTTGCTCTAGGGTTCTCATCAATAGCCACACATTTACCTTTTCCCTTATGAAATCTTTGATATCC
45878986 TTGAAATAT
66 TTGAAATAT
* * *
45878995 TTTGCTCTA-GGTTCTCATCAATAGCCACACCTTTCCCTTTTCCCTTATGGAATCTTTGATATCC
1 TTTGCTCTAGGGTTCTCATCAATAGCCACACATTTACCTTTTCCCTTATGAAATCTTTGATATCC
*
45879059 TTGAAATCT
66 TTGAAATAT
45879068 TTTGCTCTA
1 TTTGCTCTA
45879077 TTTGGACAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
73 67 0.89
74 8 0.11
ACGTcount: A:0.22, C:0.26, G:0.11, T:0.42
Consensus pattern (74 bp):
TTTGCTCTAGGGTTCTCATCAATAGCCACACATTTACCTTTTCCCTTATGAAATCTTTGATATCC
TTGAAATAT
Found at i:45880485 original size:29 final size:29
Alignment explanation
Indices: 45880452--45880786 Score: 311
Period size: 29 Copynumber: 11.5 Consensus size: 29
45880442 TATTAAAAAA
* * * *
45880452 ATGAAAAGGGATAGTTTCAACTATCAACT
1 ATGAAAAGGGATGGTGTCGACCATCAACT
*
45880481 ATGAAAAGGGATGGTGACGACCATCAACT
1 ATGAAAAGGGATGGTGTCGACCATCAACT
*
45880510 ATGAAAAAGGATGGTGAT-GACCATCAACT
1 ATGAAAAGGGATGGTG-TCGACCATCAACT
*
45880539 ATGAAAAAGGATGGTGAT-GACCATCGAA-T
1 ATGAAAAGGGATGGTG-TCGACCATC-AACT
* * * ** *
45880568 ATGAAAAGGGATAGTTTCAATTATCGACT
1 ATGAAAAGGGATGGTGTCGACCATCAACT
* *
45880597 ATGAAAAGGGATGGTGGCAACCATCGAA-T
1 ATGAAAAGGGATGGTGTCGACCATC-AACT
* * * * * *
45880626 ATGAAAAGAGATAGTTTTGACTATCGACT
1 ATGAAAAGGGATGGTGTCGACCATCAACT
*
45880655 ATGAAAAGGGATGGTGACGACCATCAACT
1 ATGAAAAGGGATGGTGTCGACCATCAACT
* * * *
45880684 ATGAAAAAGGATGGTGACGACCATCCATT
1 ATGAAAAGGGATGGTGTCGACCATCAACT
* * *
45880713 AATGAAAAGGGATGGTTTCAACCATCGACT
1 -ATGAAAAGGGATGGTGTCGACCATCAACT
*
45880743 ATGAAAAGGGATGGTGACGACCATCGAA-T
1 ATGAAAAGGGATGGTGTCGACCATC-AACT
45880772 ATGAAAAGGGATGGT
1 ATGAAAAGGGATGGT
45880787 TTTGACAATC
Statistics
Matches: 250, Mismatches: 48, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
28 3 0.01
29 220 0.88
30 27 0.11
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.22
Consensus pattern (29 bp):
ATGAAAAGGGATGGTGTCGACCATCAACT
Found at i:45882895 original size:32 final size:32
Alignment explanation
Indices: 45882858--45882925 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
45882848 TCATAAACTT
* * *
45882858 ATAAATTGATTACTTGAATTTAATAACTCATG
1 ATAAATTAATTAATTGAATTTAATAACTCATA
* *
45882890 ATAAATTAATTAATTTAATTTGATAACTCATA
1 ATAAATTAATTAATTGAATTTAATAACTCATA
45882922 ATAA
1 ATAA
45882926 TTAGTTGAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.46, C:0.07, G:0.06, T:0.41
Consensus pattern (32 bp):
ATAAATTAATTAATTGAATTTAATAACTCATA
Found at i:45888389 original size:29 final size:29
Alignment explanation
Indices: 45888352--45888457 Score: 95
Period size: 29 Copynumber: 3.6 Consensus size: 29
45888342 GTCATTTGGG
* *
45888352 ATTAACAGGCACTATGTGTCGATGTTTAT
1 ATTATCAGGCACTATGTATCGATGTTTAT
* ** *
45888381 ATTATCAGGTACTATGTATCGATGACTAC
1 ATTATCAGGCACTATGTATCGATGTTTAT
* * * *
45888410 ATTATCAGGTACTTTGTATTGATGTTCAT
1 ATTATCAGGCACTATGTATCGATGTTTAT
*
45888439 GTTGTATCAGGCACTATGT
1 -AT-TATCAGGCACTATGT
45888458 GCCAGTGTTA
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 46 0.77
30 1 0.02
31 13 0.22
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (29 bp):
ATTATCAGGCACTATGTATCGATGTTTAT
Found at i:45894181 original size:21 final size:21
Alignment explanation
Indices: 45894143--45894184 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
45894133 ATCATTTAAA
** *
45894143 TTTACTTTTTAACTTATAGTT
1 TTTACTTTAAAACATATAGTT
45894164 TTTACTTTAAAACATATAGTT
1 TTTACTTTAAAACATATAGTT
45894185 ACTAATCAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.55
Consensus pattern (21 bp):
TTTACTTTAAAACATATAGTT
Found at i:45895694 original size:57 final size:56
Alignment explanation
Indices: 45895577--45895734 Score: 262
Period size: 57 Copynumber: 2.8 Consensus size: 56
45895567 AAGTAAATGT
* * *
45895577 TAGGATATTATTATGGGATATTACCTTTTAGTAATTTGATTCCTAATGAGATATTA
1 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAATGAGATACTA
* *
45895633 TAGGATATTATTATGGGATATTATCTCTTAGACAATTTGATTCCTAATGGGATACTA
1 TAGGATATTATTATGGGATATTATCTTTTAG-CAATTTGATTCCTAATGAGATACTA
45895690 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTA
1 TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTA
45895735 CGTAACTACT
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
56 43 0.45
57 52 0.55
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.44
Consensus pattern (56 bp):
TAGGATATTATTATGGGATATTATCTTTTAGCAATTTGATTCCTAATGAGATACTA
Found at i:45899251 original size:13 final size:13
Alignment explanation
Indices: 45899233--45899261 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
45899223 CCTAGTGAGA
45899233 TATTATAAGATAT
1 TATTATAAGATAT
45899246 TATTATAAGATAT
1 TATTATAAGATAT
45899259 TAT
1 TAT
45899262 CTCTTAGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (13 bp):
TATTATAAGATAT
Found at i:45899273 original size:56 final size:56
Alignment explanation
Indices: 45899198--45899335 Score: 195
Period size: 56 Copynumber: 2.5 Consensus size: 56
45899188 GTAACTATGG
* * * *
45899198 GATATTATTTTTTAACAATTTGATTCCTAGTGAGATATTATAAGATATTATTATAA
1 GATATTATCTTTTAGCAATTTGATTCCGAATGAGATATTATAAGATATTATTATAA
* * * **
45899254 GATATTATCTCTTAGCAATTTGATTCCGAATGGGATATTATAGGATATTATTATGG
1 GATATTATCTTTTAGCAATTTGATTCCGAATGAGATATTATAAGATATTATTATAA
45899310 GATATTATCTTTTAGCAATTTGATTC
1 GATATTATCTTTTAGCAATTTGATTC
45899336 TTAAATAACT
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 72 1.00
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (56 bp):
GATATTATCTTTTAGCAATTTGATTCCGAATGAGATATTATAAGATATTATTATAA
Found at i:45908332 original size:34 final size:34
Alignment explanation
Indices: 45908286--45908350 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
45908276 CGCAACAATT
*
45908286 TTGTTCCGTAAACTTCTTTTTTAACCTTTAATAA
1 TTGTTCCCTAAACTTCTTTTTTAACCTTTAATAA
45908320 TTGTTCCCTAAACTTCTTTTTTAACCTTTAA
1 TTGTTCCCTAAACTTCTTTTTTAACCTTTAA
45908351 CTAGCTTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.25, C:0.20, G:0.05, T:0.51
Consensus pattern (34 bp):
TTGTTCCCTAAACTTCTTTTTTAACCTTTAATAA
Found at i:45922623 original size:12 final size:12
Alignment explanation
Indices: 45922606--45922631 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
45922596 TGGTTGCATG
45922606 TCATTCGAAAGC
1 TCATTCGAAAGC
45922618 TCATTCGAAAGC
1 TCATTCGAAAGC
45922630 TC
1 TC
45922632 TACTCCAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (12 bp):
TCATTCGAAAGC
Found at i:45925247 original size:29 final size:31
Alignment explanation
Indices: 45925197--45925258 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 31
45925187 TATTTGCATG
* *
45925197 TTTCTGTTTTAATCACTCATA-T-TTAAAAT
1 TTTCTATTTTAATCACTAATATTGTTAAAAT
* *
45925226 TTTCTATTTTAGTCATTAATATTGTTAAAAT
1 TTTCTATTTTAATCACTAATATTGTTAAAAT
45925257 TT
1 TT
45925259 AATATTTTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 17 0.63
30 1 0.04
31 9 0.33
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.55
Consensus pattern (31 bp):
TTTCTATTTTAATCACTAATATTGTTAAAAT
Found at i:45925492 original size:24 final size:24
Alignment explanation
Indices: 45925434--45925492 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
45925424 TTTAATCTTG
*
45925434 ATTTTTAAAAATTTAAAATTAAAA
1 ATTTTTAAAAATATAAAATTAAAA
* *
45925458 ATTTTAAAAAAAATAAAATTAAAA
1 ATTTTTAAAAATATAAAATTAAAA
45925482 ATTATTTAAAA
1 ATT-TTTAAAA
45925493 GTTCATTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 24 0.80
25 6 0.20
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (24 bp):
ATTTTTAAAAATATAAAATTAAAA
Found at i:45926268 original size:391 final size:386
Alignment explanation
Indices: 45925509--45926289 Score: 1499
Period size: 391 Copynumber: 2.0 Consensus size: 386
45925499 TTTTGATGAA
45925509 AATACATATAAAAATTATAAAATATTTATAAAAAATGAATATATATATTTTCTCATTTTCTAATA
1 AATACATATAAAAATTATAAAATATTTATAAAAAATGAATATATATATTTTCTCATTTTCTAATA
45925574 TGACATTTATTTATTAAAATAATAACTTTATAAATAAAACAATTTAAGGAGAAAAAATCACGAAG
66 TGACATTTATTTATTAAAATAATAACTTTATAAATAAAACAATTTAAGGAGAAAAAATCACGAAG
*
45925639 AAAACTTAAGCATATTTAGCTTTTACCATTTTTTTCAACATTAATAACTGCCACCTTCAGGTCGG
131 AAAACTTAAGCATATTTAGCTTTTACCATTTTTTTCAACATTAATAACTGCCACATTCAGGTCGG
45925704 GTCAAACACCACAGCATGAGGCCGAAAAAGGTAAGAATCGATGTCTTTAGGTTGTTGCTCAGAAT
196 GTCAAACACCACAGCATGAGGCCGAAAAAGGTAAGAATCGATGTCTTTAGGTTGTTGCTCAGAAT
45925769 GAGTTTATTGCGTTTGAGGTTACGCTTGAGGGCGGGGCATAATTGGGGATACATAGGTGAGGATG
261 GAGTTTATTGCGTTTGAGGTTACGCTTGAGGGCGGGGCATAATTGGGGATACATAGGTGAGGATG
45925834 AGAGCTTGGAGACCAATAGGTGGAAGGTTATGCTATTAGCTTCGCAATTGATTCCTAGTTT
326 AGAGCTTGGAGACCAATAGGTGGAAGGTTATGCTATTAGCTTCGCAATTGATTCCTAGTTT
45925895 AATACATATAAAAATTATAAAATATTTATAAATAAATGCATATATATATATATTTTCTCATTTTC
1 AATACATATAAAAATTATAAAATATTTATAAA-AAATG---A-ATATATATATTTTCTCATTTTC
*
45925960 TAATATGACATTTATTTATTAAAATAATAATTTTATAAATAAAACAATTTAAGGAGAAAAAATCA
61 TAATATGACATTTATTTATTAAAATAATAACTTTATAAATAAAACAATTTAAGGAGAAAAAATCA
45926025 CGAAGAAAACTTAAGCATATTTAGCTTTTACCATTTTTTTCAACATTAATAACTGCCACATTCAG
126 CGAAGAAAACTTAAGCATATTTAGCTTTTACCATTTTTTTCAACATTAATAACTGCCACATTCAG
45926090 GTCGGGTCAAACACCACAGCATGAGGCCGAAAAAGGTAAGAATCGATGTCTTTAGGTTGTTGCTC
191 GTCGGGTCAAACACCACAGCATGAGGCCGAAAAAGGTAAGAATCGATGTCTTTAGGTTGTTGCTC
45926155 AGAATGAGTTTATTGCGTTTGAGGTTACGCTTGAGGGCGGGGCATAATTGGGGATACATAGGTGA
256 AGAATGAGTTTATTGCGTTTGAGGTTACGCTTGAGGGCGGGGCATAATTGGGGATACATAGGTGA
45926220 GGATGAGAGCTTGGAGACCAATAGGTGGAAGGTTATGCTATTAGCTTCGCAATTGATTCCTAGTT
321 GGATGAGAGCTTGGAGACCAATAGGTGGAAGGTTATGCTATTAGCTTCGCAATTGATTCCTAGTT
45926285 T
386 T
45926286 AATA
1 AATA
45926290 GCACGATGAT
Statistics
Matches: 388, Mismatches: 2, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
386 32 0.08
387 5 0.01
390 1 0.00
391 350 0.90
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (386 bp):
AATACATATAAAAATTATAAAATATTTATAAAAAATGAATATATATATTTTCTCATTTTCTAATA
TGACATTTATTTATTAAAATAATAACTTTATAAATAAAACAATTTAAGGAGAAAAAATCACGAAG
AAAACTTAAGCATATTTAGCTTTTACCATTTTTTTCAACATTAATAACTGCCACATTCAGGTCGG
GTCAAACACCACAGCATGAGGCCGAAAAAGGTAAGAATCGATGTCTTTAGGTTGTTGCTCAGAAT
GAGTTTATTGCGTTTGAGGTTACGCTTGAGGGCGGGGCATAATTGGGGATACATAGGTGAGGATG
AGAGCTTGGAGACCAATAGGTGGAAGGTTATGCTATTAGCTTCGCAATTGATTCCTAGTTT
Found at i:45936845 original size:9 final size:9
Alignment explanation
Indices: 45936827--45936857 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
45936817 AAAATGGTCA
*
45936827 CATAACTTG
1 CATAATTTG
45936836 CATAATTTG
1 CATAATTTG
45936845 CATAATTTG
1 CATAATTTG
45936854 CATA
1 CATA
45936858 TGGTTAGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (9 bp):
CATAATTTG
Found at i:45938141 original size:21 final size:21
Alignment explanation
Indices: 45938108--45938148 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
45938098 AATTACTGAT
* *
45938108 AAAAGTTCTATATCTCTATAG
1 AAAAGTTCGATATATCTATAG
*
45938129 AAAAGTTGGATATATCTATA
1 AAAAGTTCGATATATCTATA
45938149 TAATCAATCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (21 bp):
AAAAGTTCGATATATCTATAG
Found at i:45938245 original size:23 final size:19
Alignment explanation
Indices: 45938198--45938256 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
45938188 ATATCTATGG
45938198 ATTAATAATACTCTATATA
1 ATTAATAATACTCTATATA
45938217 ATTAATAATACTCTATATA
1 ATTAATAATACTCTATATA
* *
45938236 GATAAATAATAATCTATATA
1 -ATTAATAATACTCTATATA
45938256 A
1 A
45938257 CATAATCTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 20 0.54
20 17 0.46
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39
Consensus pattern (19 bp):
ATTAATAATACTCTATATA
Found at i:45938263 original size:14 final size:14
Alignment explanation
Indices: 45938244--45938272 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
45938234 TAGATAAATA
45938244 ATAATCTATATAAC
1 ATAATCTATATAAC
45938258 ATAATCTATATAAC
1 ATAATCTATATAAC
45938272 A
1 A
45938273 AAGTAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTATATAAC
Found at i:45938543 original size:15 final size:15
Alignment explanation
Indices: 45938523--45938561 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
45938513 TATCATTTCA
45938523 ATATATAATTTAAAT
1 ATATATAATTTAAAT
45938538 ATATATAAATTTAAAT
1 ATATAT-AATTTAAAT
45938554 ATAT-TAAT
1 ATATATAAT
45938562 AATATTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 3 0.13
15 7 0.30
16 13 0.57
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATATATAATTTAAAT
Found at i:45942873 original size:12 final size:12
Alignment explanation
Indices: 45942856--45942895 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
45942846 AACAGATTAC
*
45942856 ATAATAATAAAG
1 ATAATAATAAAA
45942868 ATAATAATAAAA
1 ATAATAATAAAA
45942880 ATAATAA-AATAA
1 ATAATAATAA-AA
45942892 ATAA
1 ATAA
45942896 AGAAAATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 2 0.08
12 24 0.92
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (12 bp):
ATAATAATAAAA
Found at i:45942884 original size:21 final size:21
Alignment explanation
Indices: 45942858--45942904 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
45942848 CAGATTACAT
45942858 AATAATAAAGAT-AATAATA-AA
1 AATAATAAA-ATAAATAA-AGAA
45942879 AATAATAAAATAAATAAAGAA
1 AATAATAAAATAAATAAAGAA
45942900 AATAA
1 AATAA
45942905 AATAGAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.21
Consensus pattern (21 bp):
AATAATAAAATAAATAAAGAA
Found at i:45946861 original size:591 final size:591
Alignment explanation
Indices: 45945740--45946919 Score: 2351
Period size: 591 Copynumber: 2.0 Consensus size: 591
45945730 TCAAATATTA
45945740 TGTTAATCTTTTTTTCCCTTTTTTTTTACTTTCCCCAAAATCCCTCCACTCTCTTGTAGTTTTTC
1 TGTTAATCTTTTTTTCCCTTTTTTTTTACTTTCCCCAAAATCCCTCCACTCTCTTGTAGTTTTTC
45945805 TCTTCATTGCTGCCGAATTTCTGCTCTCTTTCACCCTTCACCTTTTTTATTTTTCTTTTCCCACT
66 TCTTCATTGCTGCCGAATTTCTGCTCTCTTTCACCCTTCACCTTTTTTATTTTTCTTTTCCCACT
*
45945870 CTGCCTCGTGTCGCTCTACATTTATCTATGATCGTTTGGTAAGTTTTAGATAAGTGATTTGTCTC
131 CTGCCTCATGTCGCTCTACATTTATCTATGATCGTTTGGTAAGTTTTAGATAAGTGATTTGTCTC
45945935 CAATTGTTAACTTTCTTCTGAATTTTTTTGTTTATGCCAATTAGAGGAGGATTCAAGGGCTCGTA
196 CAATTGTTAACTTTCTTCTGAATTTTTTTGTTTATGCCAATTAGAGGAGGATTCAAGGGCTCGTA
45946000 ATCACCAATCGGAGTCTTAGTTTGTTTGGGAATTACTGTTCATCGGTTGAAGGTAAGGTTTAGTA
261 ATCACCAATCGGAGTCTTAGTTTGTTTGGGAATTACTGTTCATCGGTTGAAGGTAAGGTTTAGTA
45946065 ACTTATGGGTTAAAACCTCGATACGAGTTCCCCTATTCTGACTTTGGAAAATCATCAAAATTTGG
326 ACTTATGGGTTAAAACCTCGATACGAGTTCCCCTATTCTGACTTTGGAAAATCATCAAAATTTGG
45946130 AGAAAAATAATTAGGGGTTAAAATTTACATGTTTAAATTATTAATGAGTCTATTTTCAATAAAAA
391 AGAAAAATAATTAGGGGTTAAAATTTACATGTTTAAATTATTAATGAGTCTATTTTCAATAAAAA
45946195 AAATGGTAACATCATCCAAATTTTTTACTAAGAGATAATTAATTTTTAGCAAAGAAAGGTCGAAG
456 AAATGGTAACATCATCCAAATTTTTTACTAAGAGATAATTAATTTTTAGCAAAGAAAGGTCGAAG
45946260 CTGTCAGACAATTTTATGGTAGAAAGGTATTTGAGCCTAGTTTCAAAGATATCAAGCGGAGCTTA
521 CTGTCAGACAATTTTATGGTAGAAAGGTATTTGAGCCTAGTTTCAAAGATATCAAGCGGAGCTTA
45946325 ATTTTC
586 ATTTTC
45946331 TGTTAATCTTTTTTTCCCTTTTTTTTTACTTTCCCCAAAATCCCTCCACTCTCTTGTAGTTTTTC
1 TGTTAATCTTTTTTTCCCTTTTTTTTTACTTTCCCCAAAATCCCTCCACTCTCTTGTAGTTTTTC
45946396 TCTTCATTGCTGCCGAATTTCTGCTCTCTTTCACCCTTCACCTTTTTTATTTTTCTTTTCCCACT
66 TCTTCATTGCTGCCGAATTTCTGCTCTCTTTCACCCTTCACCTTTTTTATTTTTCTTTTCCCACT
45946461 CTGCCTCATGTCGCTCTACATTTATCTATGATCGTTTGGTAAGTTTTAGATAAGTGATTTGTCTC
131 CTGCCTCATGTCGCTCTACATTTATCTATGATCGTTTGGTAAGTTTTAGATAAGTGATTTGTCTC
45946526 CAATTGTTAACTTTCTTCTGAATTTTTTTGTTTATGCCAATTAGAGGAGGATTCAAGGGCTCGTA
196 CAATTGTTAACTTTCTTCTGAATTTTTTTGTTTATGCCAATTAGAGGAGGATTCAAGGGCTCGTA
45946591 ATCACCAATCGGAGTCTTAGTTTGTTTGGGAATTACTGTTCATCGGTTGAAGGTAAGGTTTAGTA
261 ATCACCAATCGGAGTCTTAGTTTGTTTGGGAATTACTGTTCATCGGTTGAAGGTAAGGTTTAGTA
45946656 ACTTATGGGTTAAAACCTCGATACGAGTTCCCCTATTCTGACTTTGGAAAATCATCAAAATTTGG
326 ACTTATGGGTTAAAACCTCGATACGAGTTCCCCTATTCTGACTTTGGAAAATCATCAAAATTTGG
45946721 AGAAAAATAATTAGGGGTTAAAATTTACATGTTTAAATTATTAATGAGTCTATTTTCAATAAAAA
391 AGAAAAATAATTAGGGGTTAAAATTTACATGTTTAAATTATTAATGAGTCTATTTTCAATAAAAA
45946786 AAATGGTAACATCATCCAAATTTTTTACTAAGAGATAATTAATTTTTAGCAAAGAAAGGTCGAAG
456 AAATGGTAACATCATCCAAATTTTTTACTAAGAGATAATTAATTTTTAGCAAAGAAAGGTCGAAG
45946851 CTGTCAGACAATTTTATGGTAGAAAGGTATTTGAGCCTAGTTTCAAAGATATCAAGCGGAGCTTA
521 CTGTCAGACAATTTTATGGTAGAAAGGTATTTGAGCCTAGTTTCAAAGATATCAAGCGGAGCTTA
45946916 ATTT
586 ATTT
45946920 AGAATTCTAT
Statistics
Matches: 588, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
591 588 1.00
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (591 bp):
TGTTAATCTTTTTTTCCCTTTTTTTTTACTTTCCCCAAAATCCCTCCACTCTCTTGTAGTTTTTC
TCTTCATTGCTGCCGAATTTCTGCTCTCTTTCACCCTTCACCTTTTTTATTTTTCTTTTCCCACT
CTGCCTCATGTCGCTCTACATTTATCTATGATCGTTTGGTAAGTTTTAGATAAGTGATTTGTCTC
CAATTGTTAACTTTCTTCTGAATTTTTTTGTTTATGCCAATTAGAGGAGGATTCAAGGGCTCGTA
ATCACCAATCGGAGTCTTAGTTTGTTTGGGAATTACTGTTCATCGGTTGAAGGTAAGGTTTAGTA
ACTTATGGGTTAAAACCTCGATACGAGTTCCCCTATTCTGACTTTGGAAAATCATCAAAATTTGG
AGAAAAATAATTAGGGGTTAAAATTTACATGTTTAAATTATTAATGAGTCTATTTTCAATAAAAA
AAATGGTAACATCATCCAAATTTTTTACTAAGAGATAATTAATTTTTAGCAAAGAAAGGTCGAAG
CTGTCAGACAATTTTATGGTAGAAAGGTATTTGAGCCTAGTTTCAAAGATATCAAGCGGAGCTTA
ATTTTC
Found at i:45954334 original size:13 final size:13
Alignment explanation
Indices: 45954316--45954348 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
45954306 AAAAACAAAA
45954316 AAAAAACTAAGTT
1 AAAAAACTAAGTT
45954329 AAAAAACTAAGTT
1 AAAAAACTAAGTT
45954342 AACAAAA
1 AA-AAAA
45954349 TTTAATCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.67, C:0.09, G:0.06, T:0.18
Consensus pattern (13 bp):
AAAAAACTAAGTT
Found at i:45954610 original size:37 final size:37
Alignment explanation
Indices: 45954569--45954642 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
45954559 AGACAATGTA
*
45954569 GTAATATCTAATTCTCCTCTATGTGTCCAAAATCTTT
1 GTAATACCTAATTCTCCTCTATGTGTCCAAAATCTTT
45954606 GTAATACCTAATTCTCCTCTATGTGTCCAAAATCTTT
1 GTAATACCTAATTCTCCTCTATGTGTCCAAAATCTTT
45954643 CTTTGTCTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.42
Consensus pattern (37 bp):
GTAATACCTAATTCTCCTCTATGTGTCCAAAATCTTT
Found at i:45965773 original size:26 final size:26
Alignment explanation
Indices: 45965744--45965798 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
45965734 TTGAATCATG
45965744 TAAGTTTAATTCTTGATGATTTCTGC
1 TAAGTTTAATTCTTGATGATTTCTGC
* * *
45965770 TAAGTTTGATTCTTGATTATTTCTTC
1 TAAGTTTAATTCTTGATGATTTCTGC
45965796 TAA
1 TAA
45965799 TTTTTGTGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.24, C:0.11, G:0.13, T:0.53
Consensus pattern (26 bp):
TAAGTTTAATTCTTGATGATTTCTGC
Found at i:45966558 original size:46 final size:46
Alignment explanation
Indices: 45966491--45966652 Score: 285
Period size: 46 Copynumber: 3.6 Consensus size: 46
45966481 TTTGAGTACT
45966491 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
45966537 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
45966583 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
45966628 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
45966653 ATCATATGTA
Statistics
Matches: 114, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
43 12 0.11
44 5 0.04
45 19 0.17
46 78 0.68
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.28
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:45968206 original size:28 final size:28
Alignment explanation
Indices: 45968166--45968223 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
45968156 AAATACCATA
* *
45968166 ATATATATAATGCATGCTCATAACAGAT
1 ATATATATAATGCATACTCAAAACAGAT
*
45968194 ATATATATCATGCATACTCAAAACAGAT
1 ATATATATAATGCATACTCAAAACAGAT
45968222 AT
1 AT
45968224 TGGACATGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.31
Consensus pattern (28 bp):
ATATATATAATGCATACTCAAAACAGAT
Found at i:45968453 original size:33 final size:33
Alignment explanation
Indices: 45968416--45968494 Score: 113
Period size: 33 Copynumber: 2.4 Consensus size: 33
45968406 CTAAAATTTA
* *
45968416 GGCCCACAGGGCCCAAAATGGCCTTGCCCGTGT
1 GGCCCACACGGCCCAAAATGGCATTGCCCGTGT
*
45968449 GGCCCACACGGCCTAAAATGGCATTGCCCGTGT
1 GGCCCACACGGCCCAAAATGGCATTGCCCGTGT
* *
45968482 GTCACACACGGCC
1 GGCCCACACGGCC
45968495 TCGCACACAG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.20, C:0.37, G:0.28, T:0.15
Consensus pattern (33 bp):
GGCCCACACGGCCCAAAATGGCATTGCCCGTGT
Found at i:45970375 original size:18 final size:19
Alignment explanation
Indices: 45970352--45970392 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
45970342 AGTGTTTTTA
*
45970352 AATTTTATAATATTTA-AT
1 AATTTTAAAATATTTATAT
45970370 AATTTTAAAATATTTATAT
1 AATTTTAAAATATTTATAT
45970389 AATT
1 AATT
45970393 AATTCTATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
AATTTTAAAATATTTATAT
Found at i:45970375 original size:26 final size:26
Alignment explanation
Indices: 45970346--45970395 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
45970336 AAAAGTAGTG
* *
45970346 TTTTTAAAT-TTTATAATATTTAATAA
1 TTTTAAAATATTTAT-ATAATTAATAA
45970372 TTTTAAAATATTTATATAATTAAT
1 TTTTAAAATATTTATATAATTAAT
45970396 TCTATCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 16 0.76
27 5 0.24
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
TTTTAAAATATTTATATAATTAATAA
Found at i:45987441 original size:38 final size:38
Alignment explanation
Indices: 45987392--45987467 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
45987382 TTGTTCAAGT
45987392 AAAACTCTTGTACCTTTTTCCTATAAATAAGAATTATA
1 AAAACTCTTGTACCTTTTTCCTATAAATAAGAATTATA
45987430 AAAACTCTTGTACCTTTTTCCTATAAATAAGAATTATA
1 AAAACTCTTGTACCTTTTTCCTATAAATAAGAATTATA
45987468 GAATGACATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.39
Consensus pattern (38 bp):
AAAACTCTTGTACCTTTTTCCTATAAATAAGAATTATA
Found at i:45988230 original size:15 final size:15
Alignment explanation
Indices: 45988210--45988238 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
45988200 ATAAAATGAT
45988210 TTAGCTTGAGATGTC
1 TTAGCTTGAGATGTC
45988225 TTAGCTTGAGATGT
1 TTAGCTTGAGATGT
45988239 TGATAAATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.10, G:0.28, T:0.41
Consensus pattern (15 bp):
TTAGCTTGAGATGTC
Found at i:45992971 original size:39 final size:40
Alignment explanation
Indices: 45992928--45993095 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
45992918 CTCGTTCAAG
* * * *
45992928 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
45992967 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
45993007 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
45993047 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
45993087 TGCCTTCGG
1 TGCCTTCGG
45993096 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:45993079 original size:80 final size:80
Alignment explanation
Indices: 45992963--45993148 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
45992953 AGTAACTCAT
* * *
45992963 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
45993027 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
45993042 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
45993106 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
45993123 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
45993149 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:45993108 original size:40 final size:40
Alignment explanation
Indices: 45992965--45993148 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
45992955 TAACTCATAC
* *
45992965 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
45993005 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
45993045 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
45993085 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
45993126 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
45993149 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:45994093 original size:88 final size:88
Alignment explanation
Indices: 45993944--45994132 Score: 351
Period size: 88 Copynumber: 2.1 Consensus size: 88
45993934 ACCAAGAATG
*
45993944 ATGCATCCATGGTCAAGTGTCATTTCCATCACATAGCAAGATTTAGACCATGGGCTAGGTAGAAC
1 ATGCATCCATGGTCAAATGTCATTTCCATCACATAGCAAGATTTAGACCATGGGCTAGGTAGAAC
45994009 TCAAGCTAACAACTAAAACATGC
66 TCAAGCTAACAACTAAAACATGC
45994032 ATGCATCCATGGTCAAATGTCATTTCCATCACATAGCAAGATTTAGACCATGGGCTAGGTAGAAC
1 ATGCATCCATGGTCAAATGTCATTTCCATCACATAGCAAGATTTAGACCATGGGCTAGGTAGAAC
45994097 TCAAGCTAACAACTAAAACATGC
66 TCAAGCTAACAACTAAAACATGC
*
45994120 ATGCCTCTCATGG
1 ATGCATC-CATGG
45994133 AACACACTCA
Statistics
Matches: 98, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
88 93 0.95
89 5 0.05
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.24
Consensus pattern (88 bp):
ATGCATCCATGGTCAAATGTCATTTCCATCACATAGCAAGATTTAGACCATGGGCTAGGTAGAAC
TCAAGCTAACAACTAAAACATGC
Found at i:46001377 original size:51 final size:50
Alignment explanation
Indices: 46001251--46001438 Score: 207
Period size: 51 Copynumber: 3.7 Consensus size: 50
46001241 TATCATTCGA
* * * * *
46001251 TACACGTAGTAGGCTTCACATAGTACTACACACGTGATCAAACTTTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACCTTCCAG
* * *
46001301 TTCACGTAGTAGCCTGTACATAGTACTACGCACGTGACCAAAGCCTTCCAG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAA-CCTTCCAG
* * * * *
46001352 TACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTATCTATCGA-
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-AACCT-TCCAG
* *
46001403 TACACGTAGTAGCCTGCACTTAATACTACACACGTG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTG
46001439 TTTATAGGCA
Statistics
Matches: 115, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
50 36 0.31
51 75 0.65
52 4 0.03
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (50 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACCTTCCAG
Found at i:46011826 original size:17 final size:18
Alignment explanation
Indices: 46011799--46011846 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
46011789 TGTTGATTAT
46011799 TATTATTTTATTATATTC
1 TATTATTTTATTATATTC
* *
46011817 TATT-TTTTATTTTATTT
1 TATTATTTTATTATATTC
*
46011834 TATTATCTTATTA
1 TATTATTTTATTA
46011847 CATTTGAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (18 bp):
TATTATTTTATTATATTC
Found at i:46021688 original size:23 final size:23
Alignment explanation
Indices: 46021647--46021690 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
46021637 AGTATTATTA
* *
46021647 ATGATTAATGAATTTAATTAAAT
1 ATGATTAATGAAGTAAATTAAAT
*
46021670 ATGATTAATTAAGTAAATTAA
1 ATGATTAATGAAGTAAATTAA
46021691 GGTTTAATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (23 bp):
ATGATTAATGAAGTAAATTAAAT
Found at i:46031995 original size:43 final size:43
Alignment explanation
Indices: 46031934--46032045 Score: 170
Period size: 43 Copynumber: 2.6 Consensus size: 43
46031924 TACTATCGTA
* **
46031934 AACATATATCCATGCCTAATTAACATTAACCTTTTAGTTTTTT
1 AACATATATCCATGCCTAATTAACATTAACCTTTTACTTGCTT
*
46031977 AACATATATCCATGCCTAATTAACATTAATCTTTTACTTGCTT
1 AACATATATCCATGCCTAATTAACATTAACCTTTTACTTGCTT
* *
46032020 AACTTATATCCATGCCAAATTAACAT
1 AACATATATCCATGCCTAATTAACAT
46032046 CAAGATCTCC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.35, C:0.21, G:0.04, T:0.40
Consensus pattern (43 bp):
AACATATATCCATGCCTAATTAACATTAACCTTTTACTTGCTT
Found at i:46041528 original size:16 final size:16
Alignment explanation
Indices: 46041507--46041538 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
46041497 ATGTTCCGTT
46041507 TATACAGCCCTGTGTA
1 TATACAGCCCTGTGTA
46041523 TATACAGCCCTGTGTA
1 TATACAGCCCTGTGTA
46041539 ATAGGAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (16 bp):
TATACAGCCCTGTGTA
Found at i:46042887 original size:29 final size:29
Alignment explanation
Indices: 46042855--46042923 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 29
46042845 TTATGGCTGC
* * *
46042855 CTCTATCAAAAAGAATATTTTATGGCAAT
1 CTCTATTAAAAAGAAGACTTTATGGCAAT
* * *
46042884 CTCTATTAAAAGGAAGCCTTTGTGGCAAT
1 CTCTATTAAAAAGAAGACTTTATGGCAAT
46042913 CTCTATTAAAA
1 CTCTATTAAAA
46042924 GGGTGCCTGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (29 bp):
CTCTATTAAAAAGAAGACTTTATGGCAAT
Found at i:46042931 original size:29 final size:29
Alignment explanation
Indices: 46042877--46042936 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
46042867 GAATATTTTA
*
46042877 TGGCAATCTCTATTAAAAGGAAGCCTTTG
1 TGGCAATCTCTATTAAAAGGAAGCCTGTG
**
46042906 TGGCAATCTCTATTAAAAGGGTGCCTGTG
1 TGGCAATCTCTATTAAAAGGAAGCCTGTG
46042935 TG
1 TG
46042937 ATTATCTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (29 bp):
TGGCAATCTCTATTAAAAGGAAGCCTGTG
Found at i:46046905 original size:29 final size:29
Alignment explanation
Indices: 46046829--46047093 Score: 235
Period size: 29 Copynumber: 9.1 Consensus size: 29
46046819 CTGCTATTTC
* *
46046829 TAAATGGATGCCTTTGTGGCTATCTCTAT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTAT
* * * * * *
46046858 GAAAAAGAAGCATTCGTGGTTACCTCTAT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTAT
* * **
46046887 CAAAAGGAATCCTTTGTGGAAATCTCTAT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTAT
46046916 TAAAAGGAAGCCTTTGTGGCTATCTCTAT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTAT
* * * *
46046945 TAAAATGATGCATTTATGGCTATCTCTAT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTAT
* * * * **
46046974 TAAACGGAATCTTTTATGGCTATCTCCGT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTAT
* * *
46047003 TAAAATGAGGCATTTGTGGCTATCTCTAT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTAT
* * *
46047032 TAGAAGGATGCCTTTGTGGCTATCTCTGT
1 TAAAAGGAAGCCTTTGTGGCTATCTCTAT
* * *
46047061 TAATAGGATA-CCTTTTTGGCTATCTCGAT
1 TAAAAGGA-AGCCTTTGTGGCTATCTCTAT
46047090 TAAA
1 TAAA
46047094 GGTATGCCTT
Statistics
Matches: 184, Mismatches: 51, Indels: 2
0.78 0.22 0.01
Matches are distributed among these distances:
29 184 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (29 bp):
TAAAAGGAAGCCTTTGTGGCTATCTCTAT
Found at i:46051356 original size:7 final size:7
Alignment explanation
Indices: 46051344--46051370 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
46051334 TCAGTATTAG
46051344 TCCATCA
1 TCCATCA
46051351 TCCATCA
1 TCCATCA
46051358 TCCATCA
1 TCCATCA
46051365 TCCATC
1 TCCATC
46051371 CTGCCATTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.44, G:0.00, T:0.30
Consensus pattern (7 bp):
TCCATCA
Found at i:46054151 original size:15 final size:14
Alignment explanation
Indices: 46054131--46054162 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
46054121 TTTTTTGAAT
46054131 AATAAAATAACATAA
1 AATAAAATAA-ATAA
46054146 AATAAAATAAATAA
1 AATAAAATAAATAA
46054160 AAT
1 AAT
46054163 TCAAGAGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (14 bp):
AATAAAATAAATAA
Found at i:46055274 original size:20 final size:22
Alignment explanation
Indices: 46055246--46055286 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
46055236 TTTATTGAAT
46055246 TTAAATAAAAC-TAA-GAAAAC
1 TTAAATAAAACATAATGAAAAC
*
46055266 TTAACTAAAACATAATGAAAA
1 TTAAATAAAACATAATGAAAA
46055287 TGCTTGTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 3 0.17
22 5 0.28
ACGTcount: A:0.63, C:0.10, G:0.05, T:0.22
Consensus pattern (22 bp):
TTAAATAAAACATAATGAAAAC
Found at i:46058732 original size:16 final size:16
Alignment explanation
Indices: 46058708--46058743 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
46058698 TAAGATGAAA
* *
46058708 CTTTTCTTTTTCTTTT
1 CTTTCCTTTTACTTTT
46058724 CTTTCCTTTTACTTTT
1 CTTTCCTTTTACTTTT
46058740 CTTT
1 CTTT
46058744 TATTAATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.03, C:0.22, G:0.00, T:0.75
Consensus pattern (16 bp):
CTTTCCTTTTACTTTT
Found at i:46064702 original size:27 final size:27
Alignment explanation
Indices: 46064672--46064849 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
46064662 ATATTGAGTC
* * * *
46064672 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
46064699 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46064726 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
46064754 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
46064781 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
46064808 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46064835 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46064850 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:46064811 original size:82 final size:81
Alignment explanation
Indices: 46064693--46064848 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46064683 TGCTATATAA
* *
46064693 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
46064758 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
46064775 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
46064839 CACTTAGTGC
65 CACTTAGTGC
46064849 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:46066879 original size:33 final size:33
Alignment explanation
Indices: 46066841--46066906 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
46066831 AACAGGGTAC
* *
46066841 CATTGGTAGAAGCATCAACTATTATCCTCGTAT
1 CATTGGTAAAAGCATCAACTACTATCCTCGTAT
46066874 CATTGGTAAAAGCATCAACTACTATCCTCGTAT
1 CATTGGTAAAAGCATCAACTACTATCCTCGTAT
46066907 GTGCATTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (33 bp):
CATTGGTAAAAGCATCAACTACTATCCTCGTAT
Found at i:46067562 original size:15 final size:15
Alignment explanation
Indices: 46067542--46067575 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
46067532 CAATAGGATC
* *
46067542 ATCACTGAGACCATG
1 ATCACTCAGACCAGG
46067557 ATCACTCAGACCAGG
1 ATCACTCAGACCAGG
46067572 ATCA
1 ATCA
46067576 TTCCCTTCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.29, G:0.18, T:0.18
Consensus pattern (15 bp):
ATCACTCAGACCAGG
Found at i:46081001 original size:820 final size:820
Alignment explanation
Indices: 46079421--46081059 Score: 2999
Period size: 820 Copynumber: 2.0 Consensus size: 820
46079411 TTAGCTTAAT
46079421 TAATAAGTGTTTTTGTTGAACTTTATTTAATAAGTGTTGCTCTTAATTAATCTACTTACTAGGAT
1 TAATAAGTGTTTTTGTTGAACTTTATTTAATAAGTGTTGCTCTTAATTAATCTACTTACTAGGAT
46079486 TATTTACTGATGCATGAGTTTAAGTTTATTTATTTATGCTTCTTTAATTAACTAGTTGCCGGAAT
66 TATTTACTGATGCATGAGTTTAAGTTTATTTATTTATGCTTCTTTAATTAACTAGTTGCCGGAAT
*
46079551 AGTTAATGCATATGTTTAGTTTATTTACCTAAGTCAAGTATTTATTCTTGATATGTTTAATTAGT
131 AGTTAATGCATATGTTTAGTTTATTTACCTAAGTCAAGTACTTATTCTTGATATGTTTAATTAGT
*
46079616 GTTTAATATGCTTAATGAGTTATTTTAATGTGTTTATTGTAGGAGTTTCTTTAGCTAACAACCGT
196 GTTTAATATGCTTAATGAGTTATTTTAATGTGTTTATTGCAGGAGTTTCTTTAGCTAACAACCGT
* *
46079681 TGCATTTCAAAGCTGTTACAACTTAATTGAAGTGATATTTCAAGTGCTATTTGAATACAAAAGAC
261 TGCATTTCAAAGCTGTTACAACTTAATTGAAGTGACATTTCAAGTGCTATTTGAATACAAAAGAA
*
46079746 GGAGCTGTTAGAAAAGGGGTTTAATACATCATTTAAGGAAGTTTTAAAGAGCATTATATACTCTT
326 GGAGCTGTTACAAAAGGGGTTTAATACATCATTTAAGGAAGTTTTAAAGAGCATTATATACTCTT
46079811 TGAATTTTGGCAACAACCCTTTTCAACTACCAGCTGTTTTTGTTCTTTCAAAAGAATAAATTAAG
391 TGAATTTTGGCAACAACCCTTTTCAACTACCAGCTGTTTTTGTTCTTTCAAAAGAATAAATTAAG
*
46079876 CATTCAAATCATCATTAAGGAGCTGATGTCTATTCGGCTAGCCAAGGGACAGTTCAAGAGCCATT
456 CATTCAAATCATCATTAAGGAGCTGATGTCTATTCGGCTAGCCAAGGGACAATTCAAGAGCCATT
* *
46079941 TTTCAAGCGTTCATGGACATTCATTCAGCTGAATTGAAGAGAATTCAATGAAGGAGTTATTTGTT
521 TTTCAAGCCTTCATGGACATTCATTCAGCTGAATTGAAGAGAATTCAATGAAGAAGTTATTTGTT
* * *
46080006 TCAAGAATGCCAAGAGAGTTGAATTTTAATTCATCTTTTAATTAGCATATTAAAATGAATGCTTG
586 TCAAGAATGCCAAGAGAGTTGAACTTTAATTCAGCTTTTAATTAGCACATTAAAATGAATGCTTG
* * *
46080071 TGCCTATTTGGCTATCTTATTTTTAGCACTATAAATAGGTGAAATCAGATTTTGTAATGGACTTT
651 TGACTATTTGGCTACCCTATTTTTAGCACTATAAATAGGTGAAATCAGATTTTGTAATGGACTTT
46080136 TGCTAAAAATTTTGCCAATTTGTTTAATGAAACTTTGTTTCTGTGAGGTTAACTTCCTCTCCAAT
716 TGCTAAAAATTTTGCCAATTTGTTTAATGAAACTTTGTTTCTGTGAGGTTAACTTCCTCTCCAAT
*
46080201 TTCGTCCGAGTCTCGAGTGACTTATCTAGCGAGCTAGTGA
781 TTCGTACGAGTCTCGAGTGACTTATCTAGCGAGCTAGTGA
46080241 TAATAAGTGTTTTTGTTGAACTTTATTTAATAAGTGTTGCTCTTAATTAATCTACTTACTAGGAT
1 TAATAAGTGTTTTTGTTGAACTTTATTTAATAAGTGTTGCTCTTAATTAATCTACTTACTAGGAT
* * * *
46080306 TATTTATTGATGCATGAGTTTAAGTTTATTTATTTATTCTTCTTTAATTAATTAGTTGCTGGAAT
66 TATTTACTGATGCATGAGTTTAAGTTTATTTATTTATGCTTCTTTAATTAACTAGTTGCCGGAAT
* *
46080371 AGTTAATGCATATGTTTAGTTTATTTACCTCAGTTAAGTACTTATTCTTGATATGTTTAATTAGT
131 AGTTAATGCATATGTTTAGTTTATTTACCTAAGTCAAGTACTTATTCTTGATATGTTTAATTAGT
* **
46080436 GTTTAATATGCTTAATGAGTTATTTTAATGTGTTTATTGCAGGAGTTTTTTTAGCTCTCAACCGT
196 GTTTAATATGCTTAATGAGTTATTTTAATGTGTTTATTGCAGGAGTTTCTTTAGCTAACAACCGT
46080501 TGCATTTCAAAGCTGTTACAACTTAATTGAAGTGACATTTCAAGTGCTATTTGAATACAAAAGAA
261 TGCATTTCAAAGCTGTTACAACTTAATTGAAGTGACATTTCAAGTGCTATTTGAATACAAAAGAA
*
46080566 GGAGCTGTTACAAAAGGGGTTTAATACATCATTTAAGGAATTTTTAAAGAGCATTATATACTCTT
326 GGAGCTGTTACAAAAGGGGTTTAATACATCATTTAAGGAAGTTTTAAAGAGCATTATATACTCTT
*
46080631 TGAATTTTGGCAGCAACCCTTTTCAACTACCAGCTGTTTTTGTTCTTTCAAAAGAATAAATTAAG
391 TGAATTTTGGCAACAACCCTTTTCAACTACCAGCTGTTTTTGTTCTTTCAAAAGAATAAATTAAG
*
46080696 CATTCAAATCATCATTAAGGAGCTGATGTCTATTCGGCTAGCCAAGGGACAATTCAAGAGTCATT
456 CATTCAAATCATCATTAAGGAGCTGATGTCTATTCGGCTAGCCAAGGGACAATTCAAGAGCCATT
46080761 TTTCAAGCCTTCATGGACATTCATTCAGCTGAATTGAAGAGAATTCAATGAAGAAGTTATTTGTT
521 TTTCAAGCCTTCATGGACATTCATTCAGCTGAATTGAAGAGAATTCAATGAAGAAGTTATTTGTT
* *
46080826 TCAAGAATGCCAAGAGAGTTTAACTTTAATTCAGCTTTTAATTAGCACATTAAGATGAATGCTTG
586 TCAAGAATGCCAAGAGAGTTGAACTTTAATTCAGCTTTTAATTAGCACATTAAAATGAATGCTTG
46080891 TGACTATTTGGCTACCCTATTTTTAGCACTATAAATAGGTGAAATCAGATTTTGTAATGGACTTT
651 TGACTATTTGGCTACCCTATTTTTAGCACTATAAATAGGTGAAATCAGATTTTGTAATGGACTTT
**
46080956 TGCTAAACTTTTTGCCAATTTGTTTAATGAAACTTTGTTTCTGTGAGGTTAACTTCCTCTCCAAT
716 TGCTAAAAATTTTGCCAATTTGTTTAATGAAACTTTGTTTCTGTGAGGTTAACTTCCTCTCCAAT
46081021 TTCGTACGAGTCTCGAGTGACTTATCTAGCGAGCTAGTG
781 TTCGTACGAGTCTCGAGTGACTTATCTAGCGAGCTAGTG
46081060 GCGTCATCCT
Statistics
Matches: 788, Mismatches: 31, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
820 788 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (820 bp):
TAATAAGTGTTTTTGTTGAACTTTATTTAATAAGTGTTGCTCTTAATTAATCTACTTACTAGGAT
TATTTACTGATGCATGAGTTTAAGTTTATTTATTTATGCTTCTTTAATTAACTAGTTGCCGGAAT
AGTTAATGCATATGTTTAGTTTATTTACCTAAGTCAAGTACTTATTCTTGATATGTTTAATTAGT
GTTTAATATGCTTAATGAGTTATTTTAATGTGTTTATTGCAGGAGTTTCTTTAGCTAACAACCGT
TGCATTTCAAAGCTGTTACAACTTAATTGAAGTGACATTTCAAGTGCTATTTGAATACAAAAGAA
GGAGCTGTTACAAAAGGGGTTTAATACATCATTTAAGGAAGTTTTAAAGAGCATTATATACTCTT
TGAATTTTGGCAACAACCCTTTTCAACTACCAGCTGTTTTTGTTCTTTCAAAAGAATAAATTAAG
CATTCAAATCATCATTAAGGAGCTGATGTCTATTCGGCTAGCCAAGGGACAATTCAAGAGCCATT
TTTCAAGCCTTCATGGACATTCATTCAGCTGAATTGAAGAGAATTCAATGAAGAAGTTATTTGTT
TCAAGAATGCCAAGAGAGTTGAACTTTAATTCAGCTTTTAATTAGCACATTAAAATGAATGCTTG
TGACTATTTGGCTACCCTATTTTTAGCACTATAAATAGGTGAAATCAGATTTTGTAATGGACTTT
TGCTAAAAATTTTGCCAATTTGTTTAATGAAACTTTGTTTCTGTGAGGTTAACTTCCTCTCCAAT
TTCGTACGAGTCTCGAGTGACTTATCTAGCGAGCTAGTGA
Found at i:46086700 original size:27 final size:27
Alignment explanation
Indices: 46086662--46086925 Score: 205
Period size: 27 Copynumber: 9.8 Consensus size: 27
46086652 ACACGTCAAA
* *
46086662 AAAGAAAAGCCTTTATGGCAAAATATG
1 AAAGAAAAGCCTTTGTGGCGAAATATG
* *
46086689 AAAGGAAAGCCTTTGTGGAGAAATATG
1 AAAGAAAAGCCTTTGTGGCGAAATATG
** *** *
46086716 GGAGAAAAAATTTTGTGGTGAAATATG
1 AAAGAAAAGCCTTTGTGGCGAAATATG
* * * *
46086743 AGAGAAAAGCATTTGTGACGAACTATG
1 AAAGAAAAGCCTTTGTGGCGAAATATG
* *
46086770 AGAGAAAAGCATTTGTGGCG-AATCATG
1 AAAGAAAAGCCTTTGTGGCGAAAT-ATG
* *
46086797 AAAGAAAAGCCTTTATGGTGAAATATG
1 AAAGAAAAGCCTTTGTGGCGAAATATG
* ***
46086824 -AA-AAAAGCATTTGTAATGAAATATG
1 AAAGAAAAGCCTTTGTGGCGAAATATG
* *
46086849 AAAGAAAAGCCTTTTATGGTG-AATCATG
1 AAAGAAAAGCC-TTTGTGGCGAAAT-ATG
*
46086877 AAAGAAAAGTCTTTGTGGC-AAAGTATG
1 AAAGAAAAGCCTTTGTGGCGAAA-TATG
* * *
46086904 AAAGGAAAGGCTTTATGGCGAA
1 AAAGAAAAGCCTTTGTGGCGAA
46086926 TTACGAAGGG
Statistics
Matches: 190, Mismatches: 38, Indels: 17
0.78 0.16 0.07
Matches are distributed among these distances:
25 19 0.10
26 6 0.03
27 140 0.74
28 25 0.13
ACGTcount: A:0.42, C:0.08, G:0.25, T:0.25
Consensus pattern (27 bp):
AAAGAAAAGCCTTTGTGGCGAAATATG
Found at i:46088426 original size:46 final size:46
Alignment explanation
Indices: 46088340--46088428 Score: 117
Period size: 46 Copynumber: 1.9 Consensus size: 46
46088330 ATATAGGAAA
* **
46088340 AGGTTTCGAGCACCTACATATGTTACAGACTTGAGCATACAGGTTT
1 AGGTTTCGAGCACCTACATATGTTACAAACTTGAAAATACAGGTTT
* *
46088386 AGGTTTCGAGCTCCTACATATGTTGCAAACTCT-AAAATACAGG
1 AGGTTTCGAGCACCTACATATGTTACAAACT-TGAAAATACAGG
46088429 AATATTAAGC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
46 36 0.97
47 1 0.03
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (46 bp):
AGGTTTCGAGCACCTACATATGTTACAAACTTGAAAATACAGGTTT
Found at i:46100652 original size:16 final size:16
Alignment explanation
Indices: 46100598--46100652 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
46100588 ATACTATACT
46100598 AAATATTATTCTTAAA
1 AAATATTATTCTTAAA
* **
46100614 ATATATTAATT-TATATT
1 AAATATT-ATTCT-TAAA
46100631 AAATATTATTCTTAAA
1 AAATATTATTCTTAAA
46100647 AAATAT
1 AAATAT
46100653 ATAAATGGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
16 18 0.60
17 12 0.40
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (16 bp):
AAATATTATTCTTAAA
Found at i:46100728 original size:31 final size:30
Alignment explanation
Indices: 46100672--46100744 Score: 76
Period size: 32 Copynumber: 2.3 Consensus size: 30
46100662 AATACATGAA
*
46100672 ATAATAATTAAAAGTAATATATTAAAAATG
1 ATAATAATAAAAAGTAATATATTAAAAATG
* *
46100702 ATAATAAGTAAAAAGTATTGAT-TTAAAAAATA
1 ATAATAA-TAAAAAGTAAT-ATATT-AAAAATG
46100734 ATATATAATAA
1 ATA-ATAATAA
46100745 TGTGCCAACT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
30 7 0.19
31 11 0.31
32 14 0.39
33 4 0.11
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (30 bp):
ATAATAATAAAAAGTAATATATTAAAAATG
Found at i:46101617 original size:19 final size:19
Alignment explanation
Indices: 46101593--46101670 Score: 70
Period size: 20 Copynumber: 4.0 Consensus size: 19
46101583 CAAAAATAGA
46101593 TTATGATTTTTTAGGTTTT
1 TTATGATTTTTTAGGTTTT
* *
46101612 TTATGATTTTATGAGGGTTT
1 TTATGATTTT-TTAGGTTTT
*
46101632 TTA-GATTTTTTTGGGGTTTT
1 TTATGA-TTTTTT-AGGTTTT
*
46101652 TAATGATTCTTTTA-GTTTT
1 TTATGATT-TTTTAGGTTTT
46101671 GTTGTATTTA
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
19 18 0.38
20 23 0.49
21 6 0.13
ACGTcount: A:0.17, C:0.01, G:0.19, T:0.63
Consensus pattern (19 bp):
TTATGATTTTTTAGGTTTT
Found at i:46101664 original size:21 final size:20
Alignment explanation
Indices: 46101593--46101664 Score: 78
Period size: 19 Copynumber: 3.6 Consensus size: 20
46101583 CAAAAATAGA
*
46101593 TTATGATTTTTT-AGGTTTT
1 TTATGATTTTTTGAGGGTTT
*
46101612 TTATGATTTTATGAGGGTTT
1 TTATGATTTTTTGAGGGTTT
46101632 TTA-GATTTTTTTG-GGGTTT
1 TTATGA-TTTTTTGAGGGTTT
46101651 TTAATGATTCTTTT
1 TT-ATGATT-TTTT
46101665 AGTTTTGTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
19 21 0.47
20 18 0.40
21 6 0.13
ACGTcount: A:0.17, C:0.01, G:0.19, T:0.62
Consensus pattern (20 bp):
TTATGATTTTTTGAGGGTTT
Found at i:46104729 original size:30 final size:32
Alignment explanation
Indices: 46104678--46104763 Score: 140
Period size: 30 Copynumber: 2.8 Consensus size: 32
46104668 TTCATCCAAC
*
46104678 TTGGTATTTGTTATCATTTCACATAATTAAAG
1 TTGGTATTTGTTATCATTTCACAAAATTAAAG
46104710 TTGGTATTTGTT-T-ATTTCACAAAATTAAAG
1 TTGGTATTTGTTATCATTTCACAAAATTAAAG
*
46104740 TTGATATTTGTTATCATTTCACAA
1 TTGGTATTTGTTATCATTTCACAA
46104764 CCATGCATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
30 27 0.54
31 2 0.04
32 21 0.42
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (32 bp):
TTGGTATTTGTTATCATTTCACAAAATTAAAG
Found at i:46105750 original size:37 final size:37
Alignment explanation
Indices: 46105700--46105774 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
46105690 AAAAGAATAT
46105700 TTAATAGTGGTGATTACATACCCATTTTGATCACTTG
1 TTAATAGTGGTGATTACATACCCATTTTGATCACTTG
46105737 TTAATAGTGGTGATTACATACCCATTTTGATCACTTG
1 TTAATAGTGGTGATTACATACCCATTTTGATCACTTG
46105774 T
1 T
46105775 GCTCACTCAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (37 bp):
TTAATAGTGGTGATTACATACCCATTTTGATCACTTG
Found at i:46110507 original size:20 final size:20
Alignment explanation
Indices: 46110470--46110510 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
46110460 CTGCAGTTTA
* *
46110470 AAAATTTTCATCTTTTTCTG
1 AAAATTTTCATATGTTTCTG
*
46110490 AAAATTTTTATATGTTTCTG
1 AAAATTTTCATATGTTTCTG
46110510 A
1 A
46110511 TTTAGTCTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.10, G:0.07, T:0.54
Consensus pattern (20 bp):
AAAATTTTCATATGTTTCTG
Found at i:46116465 original size:16 final size:17
Alignment explanation
Indices: 46116425--46116466 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
46116415 AATAAATCAT
46116425 ACTTAAAAACCCTAAAC
1 ACTTAAAAACCCTAAAC
*
46116442 ACTAAAAAACCC-ATAAC
1 ACTTAAAAACCCTA-AAC
46116459 -CTTAAAAA
1 ACTTAAAAA
46116467 GTACAGAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.57, C:0.26, G:0.00, T:0.17
Consensus pattern (17 bp):
ACTTAAAAACCCTAAAC
Found at i:46118972 original size:30 final size:29
Alignment explanation
Indices: 46118929--46118992 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
46118919 ACTTAGTACT
* *
46118929 TATTTAATTTATATGTGAT-TTTATAAATA
1 TATTTAATTTATATATAATATTTAT-AATA
*
46118958 TATTTATTATTATATATAATATTTATAATA
1 TATTTAAT-TTATATATAATATTTATAATA
46118988 TATTT
1 TATTT
46118993 TAGGAAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 7 0.23
30 18 0.60
31 5 0.17
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (29 bp):
TATTTAATTTATATATAATATTTATAATA
Found at i:46125356 original size:8 final size:8
Alignment explanation
Indices: 46125343--46125368 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
46125333 ACTCATTTAG
46125343 TTTATTAT
1 TTTATTAT
46125351 TTTATTAT
1 TTTATTAT
46125359 TTTATTAT
1 TTTATTAT
46125367 TT
1 TT
46125369 ACCCTATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTATTAT
Found at i:46125614 original size:274 final size:274
Alignment explanation
Indices: 46125125--46125676 Score: 1077
Period size: 274 Copynumber: 2.0 Consensus size: 274
46125115 TCAAATTATA
*
46125125 ATATTAATAAGCATGTAATGTATAAAATCATACATACAAATTTAAACTCAAATTTCATGTTTCAA
1 ATATTAATAACCATGTAATGTATAAAATCATACATACAAATTTAAACTCAAATTTCATGTTTCAA
46125190 CAGTAACAATTCATCAATTAATATCATATATCCACAATTTGGAAGTTGGACACATTTCGAACCTC
66 CAGTAACAATTCATCAATTAATATCATATATCCACAATTTGGAAGTTGGACACATTTCGAACCTC
46125255 AGATTCATTTCTCAATCTCATATCACATTTCAATTCACCATTCAACTTTTCGTTTCATTTCAATA
131 AGATTCATTTCTCAATCTCATATCACATTTCAATTCACCATTCAACTTTTCGTTTCATTTCAATA
46125320 GCTCGATTGATCAACTCATTTAGTTTATTATTTTATTATTTTATTATTTACCCTATTAACAAAAC
196 GCTCGATTGATCAACTCATTTAGTTTATTATTTTATTATTTTATTATTTACCCTATTAACAAAAC
46125385 TCGAACTTTGGCAG
261 TCGAACTTTGGCAG
46125399 ATATTAATAACCATGTAATGTATAAAATCATACATACAAATTTAAACTCAAATTTCATGTTTCAA
1 ATATTAATAACCATGTAATGTATAAAATCATACATACAAATTTAAACTCAAATTTCATGTTTCAA
* *
46125464 CAGTAATAATTCATCCATTAATATCATATATCCACAATTTGGAAGTTGGACACATTTCGAACCTC
66 CAGTAACAATTCATCAATTAATATCATATATCCACAATTTGGAAGTTGGACACATTTCGAACCTC
46125529 AGATTCATTTCTCAATCTCATATCACATTTCAATTCACCATTCAACTTTTCGTTTCATTTCAATA
131 AGATTCATTTCTCAATCTCATATCACATTTCAATTCACCATTCAACTTTTCGTTTCATTTCAATA
46125594 GCTCGATTGATCAACTCATTTAGTTTATTATTTTATTATTTTATTATTTACCCTATTAACAAAAC
196 GCTCGATTGATCAACTCATTTAGTTTATTATTTTATTATTTTATTATTTACCCTATTAACAAAAC
46125659 TCGAACTTTGGCAG
261 TCGAACTTTGGCAG
46125673 ATAT
1 ATAT
46125677 ACGGATCCAA
Statistics
Matches: 275, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
274 275 1.00
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (274 bp):
ATATTAATAACCATGTAATGTATAAAATCATACATACAAATTTAAACTCAAATTTCATGTTTCAA
CAGTAACAATTCATCAATTAATATCATATATCCACAATTTGGAAGTTGGACACATTTCGAACCTC
AGATTCATTTCTCAATCTCATATCACATTTCAATTCACCATTCAACTTTTCGTTTCATTTCAATA
GCTCGATTGATCAACTCATTTAGTTTATTATTTTATTATTTTATTATTTACCCTATTAACAAAAC
TCGAACTTTGGCAG
Found at i:46125630 original size:8 final size:8
Alignment explanation
Indices: 46125617--46125642 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
46125607 ACTCATTTAG
46125617 TTTATTAT
1 TTTATTAT
46125625 TTTATTAT
1 TTTATTAT
46125633 TTTATTAT
1 TTTATTAT
46125641 TT
1 TT
46125643 ACCCTATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTATTAT
Found at i:46125772 original size:39 final size:37
Alignment explanation
Indices: 46125705--46125797 Score: 107
Period size: 39 Copynumber: 2.5 Consensus size: 37
46125695 TCCAGTATGG
* *
46125705 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
*
46125744 CACCCAGTGCCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
46125781 TACCCGGTGCCTCATCG
1 CACCCAGTGCCTCATCG
46125798 AATCTATCCG
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
37 20 0.42
38 2 0.04
39 23 0.48
40 3 0.06
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:46129284 original size:39 final size:39
Alignment explanation
Indices: 46129201--46129314 Score: 129
Period size: 39 Copynumber: 2.9 Consensus size: 39
46129191 AATTTTTACA
* * ** * *
46129201 AAGTATTTGGTTATAAAGTTGAGTTTTCAGGAGGAATTT
1 AAGTATTTGGTTACAAAGTTGAGTTTCCAATATGAAGTT
* *
46129240 GAGTATTTTGTTACAAAGTTGAGTTTCCAATATGAAGTT
1 AAGTATTTGGTTACAAAGTTGAGTTTCCAATATGAAGTT
* * *
46129279 AAGTATTTGGATACAAAATTGGGTTTCCAATATGAA
1 AAGTATTTGGTTACAAAGTTGAGTTTCCAATATGAA
46129315 TTTGAGTAAT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 62 1.00
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (39 bp):
AAGTATTTGGTTACAAAGTTGAGTTTCCAATATGAAGTT
Found at i:46129822 original size:39 final size:40
Alignment explanation
Indices: 46129737--46129824 Score: 101
Period size: 39 Copynumber: 2.2 Consensus size: 40
46129727 TTTCAAGTGA
* * *
46129737 AATTTGAGTATTTGGTTACAAAGTTGATTTTTCAAAACGG
1 AATTTGAGTATTTGGATACAAAGTTGATATTGCAAAACGG
* *
46129777 -AGTTGAGTATTTGGATACATAA-TTGATATTGCAAGA-GG
1 AATTTGAGTATTTGGATACA-AAGTTGATATTGCAAAACGG
46129815 AATTTGAGTA
1 AATTTGAGTA
46129825 ATAGTTTTAC
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
38 2 0.05
39 36 0.90
40 2 0.05
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.38
Consensus pattern (40 bp):
AATTTGAGTATTTGGATACAAAGTTGATATTGCAAAACGG
Found at i:46130877 original size:13 final size:13
Alignment explanation
Indices: 46130859--46130888 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
46130849 GCACTAAAAG
*
46130859 ACAACAGAAGCAA
1 ACAACAGAAACAA
46130872 ACAACAGAAACAA
1 ACAACAGAAACAA
46130885 ACAA
1 ACAA
46130889 AAACAATAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.23, G:0.10, T:0.00
Consensus pattern (13 bp):
ACAACAGAAACAA
Found at i:46136190 original size:28 final size:28
Alignment explanation
Indices: 46136155--46136219 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
46136145 TTCAAATAAA
**
46136155 AAAT-AAAA-AAAAAACAAAAAAAAATCA
1 AAATCAAAATAAAAAA-AAAAAAAAAGAA
*
46136182 AAATCAAAATCAAAAAAAAAAAAAAGAA
1 AAATCAAAATAAAAAAAAAAAAAAAGAA
46136210 AAATCAAAAT
1 AAATCAAAAT
46136220 CAAAGTCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
27 4 0.12
28 24 0.73
29 5 0.15
ACGTcount: A:0.82, C:0.08, G:0.02, T:0.09
Consensus pattern (28 bp):
AAATCAAAATAAAAAAAAAAAAAAAGAA
Found at i:46136202 original size:34 final size:34
Alignment explanation
Indices: 46136154--46136230 Score: 122
Period size: 34 Copynumber: 2.3 Consensus size: 34
46136144 TTTCAAATAA
46136154 AAAAT-AAAAAAAAAACAAAA-AAAAATCAAAATC
1 AAAATCAAAAAAAAAA-AAAAGAAAAATCAAAATC
46136187 AAAATCAAAAAAAAAAAAAAGAAAAATCAAAATC
1 AAAATCAAAAAAAAAAAAAAGAAAAATCAAAATC
*
46136221 AAAGTCAAAA
1 AAAATCAAAA
46136231 TGAAAATGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
33 9 0.22
34 32 0.78
ACGTcount: A:0.79, C:0.09, G:0.03, T:0.09
Consensus pattern (34 bp):
AAAATCAAAAAAAAAAAAAAGAAAAATCAAAATC
Found at i:46136219 original size:40 final size:38
Alignment explanation
Indices: 46136154--46136248 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 38
46136144 TTTCAAATAA
*
46136154 AAAATAAAAAAAAAACAAAAAAAAATCAAAATCAAAATC
1 AAAA-AAAAAAAAAAGAAAAAAAAATCAAAATCAAAATC
* *
46136193 AAAAAAAAAAAAAAGAAAAATCAAAATCAAAGTCAAAATG
1 AAAAAAAAAAAAAAGAAAAA--AAAATCAAAATCAAAATC
**
46136233 AAAATGAAAAAAAAGA
1 AAAAAAAAAAAAAAGA
46136249 GAAGGAAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
38 15 0.31
39 4 0.08
40 30 0.61
ACGTcount: A:0.78, C:0.07, G:0.05, T:0.09
Consensus pattern (38 bp):
AAAAAAAAAAAAAAGAAAAAAAAATCAAAATCAAAATC
Done.