Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 160 of 203
Found at i:50659784 original size:82 final size:82
Alignment explanation
Indices: 50659692--50659891 Score: 285
Period size: 82 Copynumber: 2.4 Consensus size: 82
50659682 AGGCCTGCGA
* * *
50659692 ATTAGCGGCGCATCAATAAAAAAGCCGTTAAAGCCCAGAACATTAGCGGCGCTTAATTA-AAAAC
1 ATTAGCGGCGCATAAATAAAAAAGCCGCTAAAGCCCAGAACATTAGCGGCGCTTAA-AACAAAAC
50659756 GCCACTAAATCCCAGAAC
65 GCCACTAAATCCCAGAAC
* * *
50659774 ATTAGCGGCGCTTAAATAAAAACGCCGCTAAATCCCAGAACATTAGCGGCGCTTAAAACAAAACG
1 ATTAGCGGCGCATAAATAAAAAAGCCGCTAAAGCCCAGAACATTAGCGGCGCTTAAAACAAAACG
*
50659839 CCGCTAAATCCCAGAAC
66 CCACTAAATCCCAGAAC
* * **
50659856 ATTAGCGGCGCTTACATAAAAACTCCGCTAAAGCCC
1 ATTAGCGGCGCATAAATAAAAAAGCCGCTAAAGCCC
50659892 CCGAAAAGTC
Statistics
Matches: 107, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
81 1 0.01
82 106 0.99
ACGTcount: A:0.39, C:0.28, G:0.17, T:0.17
Consensus pattern (82 bp):
ATTAGCGGCGCATAAATAAAAAAGCCGCTAAAGCCCAGAACATTAGCGGCGCTTAAAACAAAACG
CCACTAAATCCCAGAAC
Found at i:50659802 original size:123 final size:122
Alignment explanation
Indices: 50659627--50659887 Score: 280
Period size: 123 Copynumber: 2.1 Consensus size: 122
50659617 GGCTCTTTCC
* * * * * * * *
50659627 AAAAATGCCACTAAATGAAGAGCATTAGCGGCGTTTTTAAAAAAAGCACCGCTAAAGGCCTGCGA
1 AAAAACGCCACTAAATCAAGAACATTAGCGGCG-TCTTAAAAAAAACACCGCTAAAGCCCAG-AA
*
50659692 -ATTAGCGGCGCATCAATAA-AAAA-GCCGTTAAAGCCCAGAACATTAGCGGCGCTTA-ATT
64 CATTAGCGGCGC-TCAA-AACAAAACGCCGCTAAAGCCCAGAACATTAGCGGCGCTTACA-T
* * *
50659750 AAAAACGCCACTAAATCCCAGAACATTAGCGGCG-CTTAAATAAAAACGCCGCTAAATCCCAGAA
1 AAAAACGCCACTAAAT-CAAGAACATTAGCGGCGTCTTAAA-AAAAACACCGCTAAAGCCCAGAA
* *
50659814 CATTAGCGGCGCTTAAAACAAAACGCCGCTAAATCCCAGAACATTAGCGGCGCTTACAT
64 CATTAGCGGCGCTCAAAACAAAACGCCGCTAAAGCCCAGAACATTAGCGGCGCTTACAT
* *
50659873 AAAAACTCCGCTAAA
1 AAAAACGCCACTAAA
50659888 GCCCCCGAAA
Statistics
Matches: 116, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
121 2 0.02
122 13 0.11
123 86 0.74
124 15 0.13
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.18
Consensus pattern (122 bp):
AAAAACGCCACTAAATCAAGAACATTAGCGGCGTCTTAAAAAAAACACCGCTAAAGCCCAGAACA
TTAGCGGCGCTCAAAACAAAACGCCGCTAAAGCCCAGAACATTAGCGGCGCTTACAT
Found at i:50663557 original size:14 final size:14
Alignment explanation
Indices: 50663519--50663562 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
50663509 TAATATTATA
* *
50663519 AAAATATAGAAATC
1 AAAATATAAAAATT
*
50663533 AAAGT-TAAAAATT
1 AAAATATAAAAATT
50663546 AAAATATAAAAATT
1 AAAATATAAAAATT
50663560 AAA
1 AAA
50663563 TCTTAAATGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (14 bp):
AAAATATAAAAATT
Found at i:50670183 original size:159 final size:159
Alignment explanation
Indices: 50669894--50670209 Score: 614
Period size: 159 Copynumber: 2.0 Consensus size: 159
50669884 CTGGTTCACT
50669894 TGTAGAGGCCGAGAACCAATACAAGGACAAGTGGATAGAGAAGACAAGTGCTCAGAGTAACTTTA
1 TGTAGAGGCCGAGAACCAATACAAGGACAAGTGGATAGAGAAGACAAGTGCTCAGAGTAACTTTA
50669959 GGGTATTAAAAAGTTCGATCCCATGTTCATTGTTTTCTAATATACTCATATGAGGGATCCCCTTG
66 GGGTATTAAAAAGTTCGATCCCATGTTCATTGTTTTCTAATATACTCATATGAGGGATCCCCTTG
*
50670024 TTCGTGGGTATCTCGGGTTGGGATATACC
131 TTCGTGGGTATCTCAGGTTGGGATATACC
*
50670053 TGTAGAGGCCGAGAACCAATACAAGGACAAGTGGATAGATAAGACAAGTGCTCAGAGTAACTTTA
1 TGTAGAGGCCGAGAACCAATACAAGGACAAGTGGATAGAGAAGACAAGTGCTCAGAGTAACTTTA
50670118 GGGTATTAAAAAGTTCGATCCCATGTTCATTGTTTTCTAATATACTCATATGAGGGATCCCCTTG
66 GGGTATTAAAAAGTTCGATCCCATGTTCATTGTTTTCTAATATACTCATATGAGGGATCCCCTTG
50670183 TTCGTGGGTATCTCAGGTTGGGATATA
131 TTCGTGGGTATCTCAGGTTGGGATATA
50670210 TATTTAGCCC
Statistics
Matches: 155, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
159 155 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (159 bp):
TGTAGAGGCCGAGAACCAATACAAGGACAAGTGGATAGAGAAGACAAGTGCTCAGAGTAACTTTA
GGGTATTAAAAAGTTCGATCCCATGTTCATTGTTTTCTAATATACTCATATGAGGGATCCCCTTG
TTCGTGGGTATCTCAGGTTGGGATATACC
Found at i:50670871 original size:23 final size:23
Alignment explanation
Indices: 50670832--50670917 Score: 93
Period size: 23 Copynumber: 3.5 Consensus size: 23
50670822 TTTAGTTATT
*
50670832 TTAGTTCATGTCCTTAATTATGTC
1 TTAGTT-ATGTCATTAATTATGTC
50670856 TTAGTTATGTCATTAATTATGTC
1 TTAGTTATGTCATTAATTATGTC
50670879 TTAGTT-TGAACATCATTAATATATGTC
1 TTAGTTATG----TCATTAAT-TATGTC
50670906 TTTAGTTATGTC
1 -TTAGTTATGTC
50670918 TTAGTTTGAA
Statistics
Matches: 54, Mismatches: 1, Indels: 13
0.79 0.01 0.19
Matches are distributed among these distances:
22 2 0.04
23 22 0.41
24 6 0.11
25 2 0.04
26 8 0.15
27 6 0.11
28 6 0.11
29 2 0.04
ACGTcount: A:0.26, C:0.12, G:0.13, T:0.50
Consensus pattern (23 bp):
TTAGTTATGTCATTAATTATGTC
Found at i:50670904 original size:39 final size:39
Alignment explanation
Indices: 50670861--50670985 Score: 191
Period size: 39 Copynumber: 3.3 Consensus size: 39
50670851 ATGTCTTAGT
* *
50670861 TATGTCATTAATTATGTCTTAGTTTGAACATCATTAATA
1 TATGTCTTTAGTTATGTCTTAGTTTGAACATCATTAATA
50670900 TATGTCTTTAGTTATGTCTTAGTTTGAACATCATTAATA
1 TATGTCTTTAGTTATGTCTTAGTTTGAACATCATTAATA
* *
50670939 TATGTCTTTAGTTATGTCTTATTTTGAAC-TCACTAATA
1 TATGTCTTTAGTTATGTCTTAGTTTGAACATCATTAATA
*
50670977 TGTGT-TTTA
1 TATGTCTTTA
50670986 ATTAAGTGTT
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
37 4 0.05
38 12 0.15
39 65 0.80
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (39 bp):
TATGTCTTTAGTTATGTCTTAGTTTGAACATCATTAATA
Found at i:50670923 original size:11 final size:11
Alignment explanation
Indices: 50670823--50670884 Score: 65
Period size: 11 Copynumber: 5.5 Consensus size: 11
50670813 TCAGTCCATT
50670823 TTAGTTAT-T-
1 TTAGTTATGTC
50670832 TTAGTTCATGTCC
1 TTAGTT-ATGT-C
*
50670845 TTAATTATGTC
1 TTAGTTATGTC
50670856 TTAGTTATGTC
1 TTAGTTATGTC
*
50670867 ATTAATTATGTC
1 -TTAGTTATGTC
50670879 TTAGTT
1 TTAGTT
50670885 TGAACATCAT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
9 6 0.14
10 2 0.05
11 17 0.39
12 14 0.32
13 5 0.11
ACGTcount: A:0.23, C:0.10, G:0.13, T:0.55
Consensus pattern (11 bp):
TTAGTTATGTC
Found at i:50673183 original size:24 final size:23
Alignment explanation
Indices: 50673155--50673220 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 23
50673145 GAAAATGAGC
50673155 GAAAAATAAAAGAAATAGAGAGAA
1 GAAAAATAAAAGAAA-AGAGAGAA
*
50673179 G--AAA-AAAAGAAACGAGAGAA
1 GAAAAATAAAAGAAAAGAGAGAA
*
50673199 -AAAAATTGAAAGAAAAAGAGAG
1 GAAAAA-TAAAAG-AAAAGAGAG
50673221 CTTGAAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
20 7 0.21
21 11 0.32
22 3 0.09
23 4 0.12
24 9 0.26
ACGTcount: A:0.70, C:0.02, G:0.23, T:0.06
Consensus pattern (23 bp):
GAAAAATAAAAGAAAAGAGAGAA
Found at i:50673185 original size:20 final size:19
Alignment explanation
Indices: 50673144--50673203 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 19
50673134 TGTTGATGAG
*
50673144 AGAAAATGAGCGAAAAATAAA
1 AGAAAA-GAGAGAAAAA-AAA
50673165 AGAAATAGAGAGAAGAAAAAA
1 AGAAA-AGAGAGAA-AAAAAA
*
50673186 AGAAACGAGAGAAAAAAA
1 AGAAAAGAGAGAAAAAAA
50673204 TTGAAAGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 5 0.14
20 7 0.20
21 19 0.54
22 4 0.11
ACGTcount: A:0.70, C:0.03, G:0.22, T:0.05
Consensus pattern (19 bp):
AGAAAAGAGAGAAAAAAAA
Found at i:50675196 original size:36 final size:36
Alignment explanation
Indices: 50675137--50675205 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
50675127 AGAAGTTCAA
* * *
50675137 AGAAGCTGTCACGAGTATCATTGATCGAGTTTGGGC
1 AGAAGCTGTCACGAGGATAATTGATCAAGTTTGGGC
50675173 AGAAGCTGTCACG-GGACTAATTGATCAAGTTTG
1 AGAAGCTGTCACGAGGA-TAATTGATCAAGTTTG
50675206 TTTTCATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 2 0.07
36 27 0.93
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (36 bp):
AGAAGCTGTCACGAGGATAATTGATCAAGTTTGGGC
Found at i:50680495 original size:21 final size:20
Alignment explanation
Indices: 50680470--50680514 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
50680460 AGATATTTTT
50680470 TAAAAAATAGATAAATAAATA
1 TAAAAAATAGATAAATAAA-A
* *
50680491 TAAAATATATATAAATAAAA
1 TAAAAAATAGATAAATAAAA
50680511 TAAA
1 TAAA
50680515 GATCTCAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (20 bp):
TAAAAAATAGATAAATAAAA
Found at i:50696771 original size:79 final size:81
Alignment explanation
Indices: 50696669--50696852 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
50696659 GCTCCTCGTT
* *
50696669 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
50696731 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
50696749 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
50696813 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
50696829 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50696853 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:50696786 original size:39 final size:41
Alignment explanation
Indices: 50696669--50696852 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
50696659 GCTCCTCGTT
* *
50696669 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
50696709 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
50696749 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
50696788 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
50696829 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50696853 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:50704619 original size:79 final size:78
Alignment explanation
Indices: 50704517--50704740 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 78
50704507 GCTCCTCGTT
* *
50704517 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
50704582 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
50704597 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
50704661 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
50704675 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
50704739 GA
63 GA
50704741 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
78 36 0.29
79 56 0.44
80 34 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:50704634 original size:39 final size:40
Alignment explanation
Indices: 50704517--50704740 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
50704507 GCTCCTCGTT
* *
50704517 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
50704557 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
50704597 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
50704636 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
50704675 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
50704716 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50704741 CATCATTCAA
Statistics
Matches: 168, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 72 0.43
40 78 0.46
41 16 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:50712568 original size:40 final size:40
Alignment explanation
Indices: 50712531--50712755 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
50712521 GCTACTCGTT
* *
50712531 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
50712571 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
50712611 CAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
50712651 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
50712690 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
50712731 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
50712756 CATCATTCAA
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 118 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:50712715 original size:119 final size:120
Alignment explanation
Indices: 50712531--50712755 Score: 296
Period size: 119 Copynumber: 1.9 Consensus size: 120
50712521 GCTACTCGTT
*
50712531 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
50712596 ATTTAGTAAC-TCGCACAAATGCCTTCGGGCCTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
50712651 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
50712713 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
50712756 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
118 4 0.04
119 65 0.71
120 22 0.24
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:50717116 original size:30 final size:27
Alignment explanation
Indices: 50717063--50717127 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 27
50717053 TTCTTAATTT
50717063 ATATTATAAAAATATTATAAAATTAAA
1 ATATTATAAAAATATTATAAAATTAAA
* *
50717090 ATATTATAAATTATATTAATTAAAATTAAG
1 ATATTATAAA-AATATT-A-TAAAATTAAA
*
50717120 ATAATATA
1 ATATTATA
50717128 TTATAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 10 0.31
28 5 0.16
29 1 0.03
30 16 0.50
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (27 bp):
ATATTATAAAAATATTATAAAATTAAA
Found at i:50717351 original size:19 final size:19
Alignment explanation
Indices: 50717327--50717367 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
50717317 ATGAAATAAA
50717327 AGAATAG-AAAAAGAGAAAC
1 AGAATAGCAAAAA-AGAAAC
*
50717346 AGAATAGCTAAAAAGAAAC
1 AGAATAGCAAAAAAGAAAC
50717365 AGA
1 AGA
50717368 GAACAGACGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.66, C:0.07, G:0.20, T:0.07
Consensus pattern (19 bp):
AGAATAGCAAAAAAGAAAC
Found at i:50717445 original size:19 final size:19
Alignment explanation
Indices: 50717421--50717461 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
50717411 ATGAAATAAA
*
50717421 AGAATAGAGAAACAGAAAC
1 AGAATAGAGAAAAAGAAAC
**
50717440 AGAATAGCTAAAAAGAAAC
1 AGAATAGAGAAAAAGAAAC
50717459 AGA
1 AGA
50717462 GAACAGGCGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.63, C:0.10, G:0.20, T:0.07
Consensus pattern (19 bp):
AGAATAGAGAAAAAGAAAC
Found at i:50717473 original size:94 final size:93
Alignment explanation
Indices: 50717311--50717500 Score: 335
Period size: 94 Copynumber: 2.0 Consensus size: 93
50717301 GCATAAAAGT
*
50717311 AAACAAATGAAATAAAAGAATAGAAAAAGAGAAACAGAATAGCTAAAAAGAAACAGAGAACAGAC
1 AAACAAATGAAATAAAAGAATAGAAAAACAGAAACAGAATAGCTAAAAAGAAACAGAGAACAGAC
*
50717376 GAAAAAGAAAGAAAGGAAAGGGGAAAGGA
66 GAAAAAGAAAGAAAGGAAA-GGGAAAGAA
* *
50717405 AAACAAATGAAATAAAAGAATAGAGAAACAGAAACAGAATAGCTAAAAAGAAACAGAGAACAGGC
1 AAACAAATGAAATAAAAGAATAGAAAAACAGAAACAGAATAGCTAAAAAGAAACAGAGAACAGAC
50717470 GAAAAAGAAAGAAAGGAAAGGGAAAGAA
66 GAAAAAGAAAGAAAGGAAAGGGAAAGAA
50717498 AAA
1 AAA
50717501 TAAAAGGGAA
Statistics
Matches: 92, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
93 11 0.12
94 81 0.88
ACGTcount: A:0.65, C:0.07, G:0.23, T:0.05
Consensus pattern (93 bp):
AAACAAATGAAATAAAAGAATAGAAAAACAGAAACAGAATAGCTAAAAAGAAACAGAGAACAGAC
GAAAAAGAAAGAAAGGAAAGGGAAAGAA
Found at i:50718406 original size:23 final size:23
Alignment explanation
Indices: 50718379--50718424 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
50718369 GCTTTGCCGA
50718379 TCAGGCACTTTATGTGTCATATC
1 TCAGGCACTTTATGTGTCATATC
*
50718402 TCAGGCACTTTATGTGTCGTATC
1 TCAGGCACTTTATGTGTCATATC
50718425 AGGCACCTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.39
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCATATC
Found at i:50718428 original size:21 final size:21
Alignment explanation
Indices: 50718378--50718464 Score: 97
Period size: 21 Copynumber: 4.1 Consensus size: 21
50718368 GGCTTTGCCG
*
50718378 ATCAGGCACTTTATGTGTCAT
1 ATCAGGCACTTTATGTGTCGT
50718399 ATCTCAGGCACTTTATGTGTCGT
1 A--TCAGGCACTTTATGTGTCGT
* **
50718422 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGT
50718443 -TACAGGCAC-TTATGTGTCGT
1 AT-CAGGCACTTTATGTGTCGT
50718463 AT
1 AT
50718465 ACTGATCAGG
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
20 10 0.18
21 26 0.46
23 20 0.36
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (21 bp):
ATCAGGCACTTTATGTGTCGT
Found at i:50718429 original size:44 final size:41
Alignment explanation
Indices: 50718378--50718464 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 41
50718368 GGCTTTGCCG
* * *
50718378 ATCAGGCACTTTATGTGTCATATCTCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCAT-T-ACAGGCAC-TTATGTGTCGT
* *
50718422 ATCAGGCACCTCGTGTGTCGTTACAGGCACTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCATTACAGGCACTTATGTGTCGT
50718463 AT
1 AT
50718465 ACTGATCAGG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
41 13 0.34
42 7 0.18
43 1 0.03
44 17 0.45
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (41 bp):
ATCAGGCACCTCATGTGTCATTACAGGCACTTATGTGTCGT
Found at i:50729724 original size:18 final size:19
Alignment explanation
Indices: 50729701--50729740 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
50729691 TTCAACAAGA
50729701 TTTCTTATT-TGTTTGGAT
1 TTTCTTATTCTGTTTGGAT
* *
50729719 TTTCTTCTTCTTTTTGGAT
1 TTTCTTATTCTGTTTGGAT
50729738 TTT
1 TTT
50729741 AGGCCTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.07, C:0.10, G:0.12, T:0.70
Consensus pattern (19 bp):
TTTCTTATTCTGTTTGGAT
Found at i:50748361 original size:21 final size:22
Alignment explanation
Indices: 50748332--50748378 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
50748322 CAGAAGGAGT
*
50748332 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
50748354 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
50748375 GAGT
1 GAGT
50748379 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:50754088 original size:42 final size:42
Alignment explanation
Indices: 50754024--50754122 Score: 155
Period size: 42 Copynumber: 2.4 Consensus size: 42
50754014 GCTCTTGGTA
50754024 TCGCACACTTAGTGCCCGTTATTCAACATC-TCCATTTTAATT
1 TCGCACACTTAGTGCCCGTTATTCAACATCGT-CATTTTAATT
* * *
50754066 TCGCACACTTAGTGCCCTTTATTCAACCTCGTCATTTTAGTT
1 TCGCACACTTAGTGCCCGTTATTCAACATCGTCATTTTAATT
50754108 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
50754123 TGTTCATATA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
42 52 0.98
43 1 0.02
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.37
Consensus pattern (42 bp):
TCGCACACTTAGTGCCCGTTATTCAACATCGTCATTTTAATT
Found at i:50756063 original size:6 final size:6
Alignment explanation
Indices: 50756052--50756140 Score: 95
Period size: 6 Copynumber: 16.2 Consensus size: 6
50756042 GGGATCACTA
50756052 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT ACTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
* * *
50756096 ACTAAT -CTAAT AATAAT A-GAAT A-TAAT ACTAAT -TTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
50756140 A
1 A
50756141 GAATAGAAAG
Statistics
Matches: 72, Mismatches: 5, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
4 3 0.04
5 25 0.35
6 44 0.61
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.35
Consensus pattern (6 bp):
ACTAAT
Found at i:50756097 original size:38 final size:38
Alignment explanation
Indices: 50756052--50756139 Score: 110
Period size: 38 Copynumber: 2.3 Consensus size: 38
50756042 GGGATCACTA
*
50756052 ACTAATACTAATCTAAT-CTAACT-AATACTAATACTAAT
1 ACTAATACTAATCTAATAATAA-TAAATA-TAATACTAAT
50756090 ACTAATACTAATCTAATAATAATAGAATATAATACTAAT
1 ACTAATACTAATCTAATAATAATA-AATATAATACTAAT
*
50756129 -TTAATACTAAT
1 ACTAATACTAAT
50756140 AGAATAGAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
38 28 0.62
39 13 0.29
40 4 0.09
ACGTcount: A:0.50, C:0.14, G:0.01, T:0.35
Consensus pattern (38 bp):
ACTAATACTAATCTAATAATAATAAATATAATACTAAT
Found at i:50756107 original size:11 final size:11
Alignment explanation
Indices: 50756048--50756139 Score: 86
Period size: 11 Copynumber: 8.5 Consensus size: 11
50756038 AGCCGGGATC
50756048 ACTAA-CTAAT
1 ACTAATCTAAT
50756058 ACTAATCTAAT
1 ACTAATCTAAT
50756069 -CTAA-CTAAT
1 ACTAATCTAAT
50756078 ACTAATACTAAT
1 ACTAAT-CTAAT
50756090 ACTAATACTAAT
1 ACTAAT-CTAAT
*
50756102 -CTAATAATAAT
1 ACTAAT-CTAAT
* *
50756113 A-GAATATAAT
1 ACTAATCTAAT
*
50756123 ACTAATTTAAT
1 ACTAATCTAAT
50756134 ACTAAT
1 ACTAAT
50756140 AGAATAGAAA
Statistics
Matches: 72, Mismatches: 4, Indels: 11
0.83 0.05 0.13
Matches are distributed among these distances:
9 5 0.07
10 19 0.26
11 31 0.43
12 17 0.24
ACGTcount: A:0.50, C:0.14, G:0.01, T:0.35
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:50756123 original size:33 final size:32
Alignment explanation
Indices: 50756052--50756138 Score: 106
Period size: 33 Copynumber: 2.7 Consensus size: 32
50756042 GGGATCACTA
*
50756052 ACTAATACTAATCTAATCTAACTAATACTAAT
1 ACTAATACTAATCTAATCTAACTAATAATAAT
50756084 ACTAATACTAATACTAATCTAA-TAATAATAGAAT
1 ACTAATACTAAT-CTAATCTAACTAATAAT--AAT
*
50756118 A-TAATACTAATTTAATACTAA
1 ACTAATACTAATCTAAT-CTAA
50756139 TAGAATAGAA
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
32 22 0.45
33 23 0.47
34 4 0.08
ACGTcount: A:0.51, C:0.14, G:0.01, T:0.34
Consensus pattern (32 bp):
ACTAATACTAATCTAATCTAACTAATAATAAT
Found at i:50756139 original size:27 final size:28
Alignment explanation
Indices: 50756064--50756145 Score: 107
Period size: 27 Copynumber: 3.0 Consensus size: 28
50756054 TAATACTAAT
*
50756064 CTAAT-CTAA-CTAATACTAATACTAATA
1 CTAATACTAATCTAATACTAATA-GAATA
*
50756091 CTAATACTAATCTAATAATAATAGAATA
1 CTAATACTAATCTAATACTAATAGAATA
*
50756119 -TAATACTAATTTAATACTAATAGAATA
1 CTAATACTAATCTAATACTAATAGAATA
50756146 GAAAGAAACA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
27 30 0.61
28 8 0.16
29 11 0.22
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.34
Consensus pattern (28 bp):
CTAATACTAATCTAATACTAATAGAATA
Found at i:50766536 original size:66 final size:66
Alignment explanation
Indices: 50766430--50766555 Score: 207
Period size: 66 Copynumber: 1.9 Consensus size: 66
50766420 TTACATCCTA
* *
50766430 TTATTCAGTTTTGGTCCTAGTCAAAGTACATCCATGCATCCTAAAGCACTCTTCTAAGTTTCACA
1 TTATTCAGTTTTGGTCCTAGTCAAACTACATCCATGCATCCTAAAGCACTCTTCAAAGTTTCACA
50766495 T
66 T
* * *
50766496 TTATTCAGTTTTGGTCTTAGTCAACCTACATCCATGCATCCTAAAGCATTCTTCAAAGTT
1 TTATTCAGTTTTGGTCCTAGTCAAACTACATCCATGCATCCTAAAGCACTCTTCAAAGTT
50766556 CTAACTTTCA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (66 bp):
TTATTCAGTTTTGGTCCTAGTCAAACTACATCCATGCATCCTAAAGCACTCTTCAAAGTTTCACA
T
Found at i:50773661 original size:24 final size:24
Alignment explanation
Indices: 50773634--50773685 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
50773624 TTAGTAAGTC
*
50773634 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
50773658 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
50773682 AAAT
1 AAAT
50773686 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:50775633 original size:24 final size:24
Alignment explanation
Indices: 50775606--50775657 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
50775596 TTAGTAAGTC
*
50775606 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
50775630 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
50775654 AAAT
1 AAAT
50775658 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:50776697 original size:29 final size:29
Alignment explanation
Indices: 50776655--50776713 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
50776645 CTGGTAGAGT
*
50776655 TACTTTGGTTCAATCTGTCCTTTTCTCAA
1 TACTTTGGTTCAATCTGTCCTTCTCTCAA
*
50776684 TACTTTGGTTCAATTTGTCCTTCTCTCAA
1 TACTTTGGTTCAATCTGTCCTTCTCTCAA
50776713 T
1 T
50776714 TCCTAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.17, C:0.24, G:0.10, T:0.49
Consensus pattern (29 bp):
TACTTTGGTTCAATCTGTCCTTCTCTCAA
Found at i:50804785 original size:186 final size:186
Alignment explanation
Indices: 50804471--50804842 Score: 744
Period size: 186 Copynumber: 2.0 Consensus size: 186
50804461 AGTCATTTTT
50804471 GTGTATAAGTTATTATGTTTTGGCCAAATGTTTTGATTTGTAATGGTTAAAGGTTTGATTTATGT
1 GTGTATAAGTTATTATGTTTTGGCCAAATGTTTTGATTTGTAATGGTTAAAGGTTTGATTTATGT
50804536 GTAGCCATGTAACTTGGCTTATATTGGCTAATTGGTTGCAAGCCTATATATATATATTACTTATA
66 GTAGCCATGTAACTTGGCTTATATTGGCTAATTGGTTGCAAGCCTATATATATATATTACTTATA
50804601 TACCAATGTCTTGTGATGTGAGTTGTGTTTGCATGATACATGATGAGTTGTGGGTA
131 TACCAATGTCTTGTGATGTGAGTTGTGTTTGCATGATACATGATGAGTTGTGGGTA
50804657 GTGTATAAGTTATTATGTTTTGGCCAAATGTTTTGATTTGTAATGGTTAAAGGTTTGATTTATGT
1 GTGTATAAGTTATTATGTTTTGGCCAAATGTTTTGATTTGTAATGGTTAAAGGTTTGATTTATGT
50804722 GTAGCCATGTAACTTGGCTTATATTGGCTAATTGGTTGCAAGCCTATATATATATATTACTTATA
66 GTAGCCATGTAACTTGGCTTATATTGGCTAATTGGTTGCAAGCCTATATATATATATTACTTATA
50804787 TACCAATGTCTTGTGATGTGAGTTGTGTTTGCATGATACATGATGAGTTGTGGGTA
131 TACCAATGTCTTGTGATGTGAGTTGTGTTTGCATGATACATGATGAGTTGTGGGTA
50804843 TGGCCTAAAT
Statistics
Matches: 186, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
186 186 1.00
ACGTcount: A:0.25, C:0.09, G:0.23, T:0.43
Consensus pattern (186 bp):
GTGTATAAGTTATTATGTTTTGGCCAAATGTTTTGATTTGTAATGGTTAAAGGTTTGATTTATGT
GTAGCCATGTAACTTGGCTTATATTGGCTAATTGGTTGCAAGCCTATATATATATATTACTTATA
TACCAATGTCTTGTGATGTGAGTTGTGTTTGCATGATACATGATGAGTTGTGGGTA
Found at i:50815739 original size:28 final size:27
Alignment explanation
Indices: 50815671--50815740 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 27
50815661 CCTAGTCCGA
* *
50815671 ATATATTAATCTTATAAAAAATATTAT
1 ATATATTTATATTATAAAAAATATTAT
* *
50815698 AT-TAATTATATATTTTAAATAATATTTAT
1 ATAT-ATT-TATATTATAAAAAATA-TTAT
50815727 ATATATTTATATTA
1 ATATATTTATATTA
50815741 AACCACTAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
26 1 0.03
27 5 0.15
28 18 0.53
29 9 0.26
30 1 0.03
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (27 bp):
ATATATTTATATTATAAAAAATATTAT
Found at i:50818173 original size:20 final size:20
Alignment explanation
Indices: 50818148--50818188 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
50818138 TCTTTTATTA
50818148 ATTAAA-AAACTAATAAAATT
1 ATTAAACAAACTAA-AAAATT
*
50818168 ATTAAACATACTAAAAAATT
1 ATTAAACAAACTAAAAAATT
50818188 A
1 A
50818189 AATGTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.29
Consensus pattern (20 bp):
ATTAAACAAACTAAAAAATT
Found at i:50828134 original size:20 final size:19
Alignment explanation
Indices: 50828097--50828135 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
50828087 GAACATAGGA
*
50828097 ATTGTATTGGAAATATATT
1 ATTGTATTGGAAAGATATT
*
50828116 ATTGTGATTTGAAAGATATT
1 ATTGT-ATTGGAAAGATATT
50828136 CTGTAACGCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (19 bp):
ATTGTATTGGAAAGATATT
Found at i:50834600 original size:19 final size:19
Alignment explanation
Indices: 50834549--50834601 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
50834539 TGAACATTTT
*
50834549 ATATTTTTA-AA-ATTTGA
1 ATATTTTTATAATTTTTGA
*
50834566 AT-TTATTTTTAATTTTTGA
1 ATATT-TTTATAATTTTTGA
50834585 ATATTTTTATAATTTTT
1 ATATTTTTATAATTTTT
50834602 AAATTATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 2 0.07
17 5 0.17
18 2 0.07
19 18 0.62
20 2 0.07
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (19 bp):
ATATTTTTATAATTTTTGA
Found at i:50837474 original size:19 final size:19
Alignment explanation
Indices: 50837437--50837473 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
50837427 TAGCCATCAC
*
50837437 CAACTTTCTTTCTCATTTT
1 CAACTTTCTTTCCCATTTT
50837456 CAACTTTCTTTCCC-TTTT
1 CAACTTTCTTTCCCATTTT
50837474 TGTATCTTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.14, C:0.30, G:0.00, T:0.57
Consensus pattern (19 bp):
CAACTTTCTTTCCCATTTT
Found at i:50846084 original size:45 final size:45
Alignment explanation
Indices: 50846014--50846185 Score: 218
Period size: 45 Copynumber: 3.8 Consensus size: 45
50846004 CGTTGGTTGA
* * * *
50846014 AAACAAGTAAGACCATAGCTAAAAGACGCTGTGACATCACGATAC
1 AAACGAGTAAGACCATAGCTGAAAGACGCTATGACATCACGATTC
* * * *
50846059 AAACGAGTAAGACTATAGCTGAAAGATGTTATGGCATCACGATTC
1 AAACGAGTAAGACCATAGCTGAAAGACGCTATGACATCACGATTC
*
50846104 AAACGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTC
1 AAACGAGTAAGACCATAGCTGAAAGACGCTATGACATCACGATTC
* * * * *
50846149 AAATGTGTAAGACCATGGTTGAAAGACACTATGACAT
1 AAACGAGTAAGACCATAGCTGAAAGACGCTATGACAT
50846186 TAGGTCGGGA
Statistics
Matches: 110, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 110 1.00
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.20
Consensus pattern (45 bp):
AAACGAGTAAGACCATAGCTGAAAGACGCTATGACATCACGATTC
Found at i:50851163 original size:18 final size:20
Alignment explanation
Indices: 50851130--50851166 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
50851120 TAGAAAAATT
50851130 TTATTATGTATAAATTATAA
1 TTATTATGTATAAATTATAA
50851150 TTATTA-GT-TAAATTATA
1 TTATTATGTATAAATTATA
50851167 TATAATGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 2 0.12
20 6 0.35
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
TTATTATGTATAAATTATAA
Found at i:50851761 original size:42 final size:42
Alignment explanation
Indices: 50851626--50851761 Score: 174
Period size: 40 Copynumber: 3.3 Consensus size: 42
50851616 GGAAGCGCTT
50851626 TGTCCACATGGACAGAAAACACGTCCTTGAGAGTGCGCTTTG
1 TGTCCACATGGACAGAAAACACGTCCTTGAGAGTGCGCTTTG
* * * * *
50851668 TGTCCACGTGGAC--AAAGCGCTTCCTTGAG-GAAGCG-TTT-
1 TGTCCACATGGACAGAAAACACGTCCTTGAGAG-TGCGCTTTG
50851706 TGTCCACATGGACAGAAAACACGTCCTTGAGAGTGCGCTTTG
1 TGTCCACATGGACAGAAAACACGTCCTTGAGAGTGCGCTTTG
*
50851748 TGTCCACGTGGACA
1 TGTCCACATGGACA
50851762 AAGCGCTTCC
Statistics
Matches: 77, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
38 12 0.16
39 4 0.05
40 32 0.42
41 4 0.05
42 25 0.32
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (42 bp):
TGTCCACATGGACAGAAAACACGTCCTTGAGAGTGCGCTTTG
Found at i:50851773 original size:40 final size:40
Alignment explanation
Indices: 50851649--50851776 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
50851639 AGAAAACACG
50851649 TCCTTGAGAGTGCGCTTTGTGTCCACGTGGACAAAGCGCT
1 TCCTTGAGAGTGCGCTTTGTGTCCACGTGGACAAAGCGCT
* * * * *
50851689 TCCTTGAG-GAAGCG-TTT-TGTCCACATGGACAGAAAACACG
1 TCCTTGAGAG-TGCGCTTTGTGTCCACGTGGAC--AAAGCGCT
50851729 TCCTTGAGAGTGCGCTTTGTGTCCACGTGGACAAAGCGCT
1 TCCTTGAGAGTGCGCTTTGTGTCCACGTGGACAAAGCGCT
50851769 TCCTTGAG
1 TCCTTGAG
50851777 GAAGCGTTTT
Statistics
Matches: 72, Mismatches: 10, Indels: 12
0.77 0.11 0.13
Matches are distributed among these distances:
38 12 0.17
39 4 0.06
40 40 0.56
41 4 0.06
42 12 0.17
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCTTGAGAGTGCGCTTTGTGTCCACGTGGACAAAGCGCT
Found at i:50851783 original size:80 final size:80
Alignment explanation
Indices: 50851605--50851786 Score: 337
Period size: 80 Copynumber: 2.3 Consensus size: 80
50851595 AGCAGGAAAA
** *
50851605 CGCTTCCTCAAGGAAGCGCTTTGTCCACATGGACAGAAAACACGTCCTTGAGAGTGCGCTTTGTG
1 CGCTTCCTTGAGGAAGCGTTTTGTCCACATGGACAGAAAACACGTCCTTGAGAGTGCGCTTTGTG
50851670 TCCACGTGGACAAAG
66 TCCACGTGGACAAAG
50851685 CGCTTCCTTGAGGAAGCGTTTTGTCCACATGGACAGAAAACACGTCCTTGAGAGTGCGCTTTGTG
1 CGCTTCCTTGAGGAAGCGTTTTGTCCACATGGACAGAAAACACGTCCTTGAGAGTGCGCTTTGTG
50851750 TCCACGTGGACAAAG
66 TCCACGTGGACAAAG
50851765 CGCTTCCTTGAGGAAGCGTTTT
1 CGCTTCCTTGAGGAAGCGTTTT
50851787 CCCCGTGTCG
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 99 1.00
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (80 bp):
CGCTTCCTTGAGGAAGCGTTTTGTCCACATGGACAGAAAACACGTCCTTGAGAGTGCGCTTTGTG
TCCACGTGGACAAAG
Found at i:50853734 original size:18 final size:18
Alignment explanation
Indices: 50853711--50853753 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
50853701 TGCCAGGTCC
* *
50853711 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
50853729 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
50853747 GTTTCCT
1 GTATCCT
50853754 TTTTCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:50854414 original size:98 final size:98
Alignment explanation
Indices: 50854300--50854495 Score: 374
Period size: 98 Copynumber: 2.0 Consensus size: 98
50854290 TTGAATATTT
*
50854300 CTATATTATTTTATTTAATAAAATAAAACGTTGTTTTGAATAAAGTAATTATAATTTACTTTAAT
1 CTATATTATTTCATTTAATAAAATAAAACGTTGTTTTGAATAAAGTAATTATAATTTACTTTAAT
50854365 ATTTTTAATAAAATAGAAATTCTTTTAAATAAG
66 ATTTTTAATAAAATAGAAATTCTTTTAAATAAG
50854398 CTATATTATTTCATTTAATAAAATAAAACGTTGTTTTGAATAAAGTAATTATAATTTACTTTAAT
1 CTATATTATTTCATTTAATAAAATAAAACGTTGTTTTGAATAAAGTAATTATAATTTACTTTAAT
*
50854463 ATTTTTAATAAAATAGAAATTCTTTTATATAAG
66 ATTTTTAATAAAATAGAAATTCTTTTAAATAAG
50854496 GCAATATTTT
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.43, C:0.05, G:0.06, T:0.46
Consensus pattern (98 bp):
CTATATTATTTCATTTAATAAAATAAAACGTTGTTTTGAATAAAGTAATTATAATTTACTTTAAT
ATTTTTAATAAAATAGAAATTCTTTTAAATAAG
Found at i:50854449 original size:43 final size:43
Alignment explanation
Indices: 50854304--50854463 Score: 124
Period size: 46 Copynumber: 3.4 Consensus size: 43
50854294 ATATTTCTAT
50854304 ATTATTTTATTTAATAAAATAAAACGTTGTTTTGAATAAAGTA
1 ATTATTTTATTTAATAAAATAAAACGTTGTTTTGAATAAAGTA
* * * *
50854347 ATTATAATTTACTTTAATATTTTTAATAAAATAGAAATTCTTTTAAAT-AAGCTA
1 ATTAT--TTTA-TTTAATA----AAATAAAA-CG---TTGTTTTGAATAAAG-TA
*
50854401 TATTATTTCATTTAATAAAATAAAACGTTGTTTTGAATAAAGTA
1 -ATTATTTTATTTAATAAAATAAAACGTTGTTTTGAATAAAGTA
50854445 ATTATAATTTACTTTAATA
1 ATTAT--TTTA-TTTAATA
50854464 TTTTTAATAA
Statistics
Matches: 90, Mismatches: 10, Indels: 31
0.69 0.08 0.24
Matches are distributed among these distances:
43 10 0.11
44 11 0.12
45 10 0.11
46 14 0.16
47 1 0.01
48 7 0.08
50 7 0.08
51 1 0.01
52 7 0.08
53 6 0.07
54 11 0.12
55 5 0.06
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (43 bp):
ATTATTTTATTTAATAAAATAAAACGTTGTTTTGAATAAAGTA
Found at i:50856772 original size:127 final size:126
Alignment explanation
Indices: 50856546--50856816 Score: 434
Period size: 127 Copynumber: 2.1 Consensus size: 126
50856536 CAGGCCAAAT
* *
50856546 AGGAACTACTGTAGTAAAAGAGCGTCCACATGGGAGCTTCTTTCAGTACTTTTGCTAACAAAGCA
1 AGGAACTACTGTAGCAAAAGAGCATCCACATGGGAGCTTCTTTCAGTACTTTTGCTAACAAAGCA
*
50856611 TCCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAATTATTTTTTTC
66 TCCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCAAAATTA-TTTTTTC
* * * * *
50856673 AGGAACTACTATAGCAAAAGAGCATCCACGTGGGAGCTTCTTTCATTACTTTTGCTGACAATGCA
1 AGGAACTACTGTAGCAAAAGAGCATCCACATGGGAGCTTCTTTCAGTACTTTTGCTAACAAAGCA
* *
50856738 TCTTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTTTTC
66 TCCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTTTTC
*
50856799 AGTAACTACTGTAGCAAA
1 AGGAACTACTGTAGCAAA
50856817 TCCACGTGGG
Statistics
Matches: 132, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
126 23 0.17
127 109 0.83
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (126 bp):
AGGAACTACTGTAGCAAAAGAGCATCCACATGGGAGCTTCTTTCAGTACTTTTGCTAACAAAGCA
TCCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCAAAATTATTTTTTC
Found at i:50856970 original size:97 final size:98
Alignment explanation
Indices: 50856869--50857145 Score: 359
Period size: 96 Copynumber: 2.9 Consensus size: 98
50856859 CCTAAACCCC
* *
50856869 AAACCCTAATTTATTTTAATTTTTCCTTAAAAACCCTAAACACTAAACCCTAACCTAATTTTTTT
1 AAACCCTAATTTATTTTAATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTA
50856934 AAAAATTTATAATTAATTT-CTCAAGTAA-CCAT
66 AAAAATTTATAATTAATTTACTCAAGTAATCC-T
* *
50856966 AAACCCTATTTTATTTT-ATTTTTCCTTAAAAACCCGT-AACATTAAACCCTAATCTAATTTTTT
1 AAACCCTAATTTATTTTAATTTTTCCTTAAAAACCC-TAAACACTAAACCCTAATCTAATTTTTT
*
50857029 AAAAAATTTATAATTAATTTACTCGAGTAATCCT
65 AAAAAATTTATAATTAATTTACTCAAGTAATCCT
*** * * * * * * *
50857063 AAATATTAATTTAATTGATTTTTTCCTTAAAAACCATAAACGCGAAGCCCTAATCTAA--TTTTA
1 AAACCCTAATTTATTTTAATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTA
50857126 AAAAATTTATAATTAATTTA
66 AAAAATTTATAATTAATTTA
50857146 ATTAAAAAAC
Statistics
Matches: 158, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
96 86 0.54
97 38 0.24
98 34 0.22
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (98 bp):
AAACCCTAATTTATTTTAATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTA
AAAAATTTATAATTAATTTACTCAAGTAATCCT
Found at i:50862386 original size:24 final size:24
Alignment explanation
Indices: 50862359--50862410 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
50862349 TTAGAATAAG
* *
50862359 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCATAATAT
*
50862383 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAGCATAATAT
50862407 ATTT
1 ATTT
50862411 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:50862421 original size:24 final size:24
Alignment explanation
Indices: 50862359--50862430 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
50862349 TTAGAATAAG
* * *
50862359 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGAATAATAT
*
50862383 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGAATAATAT
50862407 ATTT-G-ACTTTGATTAGAATAATAT
1 ATTTAGCA-TTT-ATTAGAATAATAT
50862431 TTTTTCAACC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
22 1 0.02
23 4 0.10
24 37 0.88
ACGTcount: A:0.38, C:0.04, G:0.11, T:0.47
Consensus pattern (24 bp):
ATTTAGCATTTATTAGAATAATAT
Found at i:50866592 original size:24 final size:24
Alignment explanation
Indices: 50866529--50866580 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
50866519 TTTCTAGAAG
* * *
50866529 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
50866553 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
50866577 ATTT
1 ATTT
50866581 GACTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:50870239 original size:262 final size:262
Alignment explanation
Indices: 50869774--50870298 Score: 1041
Period size: 262 Copynumber: 2.0 Consensus size: 262
50869764 AGATCTCTAA
50869774 TTTTAAAATATATACTCAGAGACATATAGAAAAAATTAGCGGTAACACAGTCGCTAAAGATACAA
1 TTTTAAAATATATACTCAGAGACATATAGAAAAAATTAGCGGTAACACAGTCGCTAAAGATACAA
*
50869839 GAGGAACAGAAATCCCTCTCTTTACTAAATAAAAAATTAAGAGGATTAGAAAAAAAATATCCTTA
66 GAGGAACAGAAATCCCTCTCTTTACTAAATAAAAAATTAAGAGGATTAGAAAAAAAATATCCTCA
50869904 AGTTAGATATATACATTTAGGTATAATCATGATTACTATTAGAGCTTTATTTAGAAGAGGTCATG
131 AGTTAGATATATACATTTAGGTATAATCATGATTACTATTAGAGCTTTATTTAGAAGAGGTCATG
50869969 ATATTCCTATTATAGCTGTCCTTTTAGATAAAAGATTTGAAAATCCAATAAAAGTACTTATTGGA
196 ATATTCCTATTATAGCTGTCCTTTTAGATAAAAGATTTGAAAATCCAATAAAAGTACTTATTGGA
50870034 GG
261 GG
50870036 TTTTAAAATATATACTCAGAGACATATAGAAAAAATTAGCGGTAACACAGTCGCTAAAGATACAA
1 TTTTAAAATATATACTCAGAGACATATAGAAAAAATTAGCGGTAACACAGTCGCTAAAGATACAA
50870101 GAGGAACAGAAATCCCTCTCTTTACTAAATAAAAAATTAAGAGGATTAGAAAAAAAATATCCTCA
66 GAGGAACAGAAATCCCTCTCTTTACTAAATAAAAAATTAAGAGGATTAGAAAAAAAATATCCTCA
50870166 AGTTAGATATATACATTTAGGTATAATCATGATTACTATTAGAGCTTTATTTAGAAGAGGTCATG
131 AGTTAGATATATACATTTAGGTATAATCATGATTACTATTAGAGCTTTATTTAGAAGAGGTCATG
50870231 ATATTCCTATTATAGCTGTCCTTTTAGATAAAAGATTTGAAAATCCAATAAAAGTACTTATTGGA
196 ATATTCCTATTATAGCTGTCCTTTTAGATAAAAGATTTGAAAATCCAATAAAAGTACTTATTGGA
50870296 GG
261 GG
50870298 T
1 T
50870299 ATTCAGTCTA
Statistics
Matches: 262, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
262 262 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (262 bp):
TTTTAAAATATATACTCAGAGACATATAGAAAAAATTAGCGGTAACACAGTCGCTAAAGATACAA
GAGGAACAGAAATCCCTCTCTTTACTAAATAAAAAATTAAGAGGATTAGAAAAAAAATATCCTCA
AGTTAGATATATACATTTAGGTATAATCATGATTACTATTAGAGCTTTATTTAGAAGAGGTCATG
ATATTCCTATTATAGCTGTCCTTTTAGATAAAAGATTTGAAAATCCAATAAAAGTACTTATTGGA
GG
Found at i:50871360 original size:20 final size:22
Alignment explanation
Indices: 50871330--50871371 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
50871320 ATTAAAATCA
50871330 ATTAGCTAATATCTG-TAATTT
1 ATTAGCTAATATCTGCTAATTT
*
50871351 ATTA-CTAATATTTGCTAATTT
1 ATTAGCTAATATCTGCTAATTT
50871372 CTTGAGCAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (22 bp):
ATTAGCTAATATCTGCTAATTT
Found at i:50880545 original size:18 final size:17
Alignment explanation
Indices: 50880513--50880547 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
50880503 GTTGGAAATG
50880513 GCATCCTAAGCATGTAT
1 GCATCCTAAGCATGTAT
*
50880530 GCATCCATATGCATGTAT
1 GCATCC-TAAGCATGTAT
50880548 CTACCGGCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (17 bp):
GCATCCTAAGCATGTAT
Found at i:50883360 original size:87 final size:83
Alignment explanation
Indices: 50883117--50883369 Score: 231
Period size: 89 Copynumber: 2.9 Consensus size: 83
50883107 AAAAAGTCCG
* * * * * *
50883117 CAAACTTTTTCAAAAGAAGCAATTAAGCTATTTTTTTTCATTTAATTTGGTATTTGAACTTTTAA
1 CAAACTTTTTCAAAAAAAGCAATTAAGCTCTTTTTTTTCACTCAA-TTGGTACTTGAACTTCTAA
* * *
50883182 TATGTATAAAAAAGGTCCT
65 AATGCATAAAAAAGGCCCT
* * *
50883201 CAAATTTTTTTAAAAAAAGCAATTAAGCCCATGTTTCTTTTTGCACTCAATTGAGTACTTGAACT
1 CAAACTTTTTCAAAAAAAGCAATTAAG--C-TCTTT-TTTTT-CACTCAATTG-GTACTTGAACT
*
50883266 T-TCAAAATGCATGAAAAAGGCCCT
60 TCT-AAAATGCATAAAAAAGGCCCT
*
50883290 CAAACTTTTTCAAAAAAAGTAATTAAGCTCTTACTTTTTTACACTCAATTGGTTACTTGAA-TTA
1 CAAACTTTTTCAAAAAAAGCAATTAAGCTCTT--TTTTTT-CACTCAATTGG-TACTTGAACTT-
* *
50883354 CTAAAATACATCAAAA
61 CTAAAATGCATAAAAA
50883370 GGACCCTTTA
Statistics
Matches: 139, Mismatches: 18, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
84 24 0.17
86 7 0.05
87 40 0.29
88 11 0.08
89 57 0.41
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (83 bp):
CAAACTTTTTCAAAAAAAGCAATTAAGCTCTTTTTTTTCACTCAATTGGTACTTGAACTTCTAAA
ATGCATAAAAAAGGCCCT
Found at i:50883584 original size:21 final size:20
Alignment explanation
Indices: 50883522--50883696 Score: 105
Period size: 19 Copynumber: 9.0 Consensus size: 20
50883512 AAGTTTTAAT
*
50883522 AAAAAA-TATAGAAATTAT-
1 AAAAAATTATAAAAATTATA
* *
50883540 TAAAAATTAGAAAGAATT-T-
1 AAAAAATTATAAA-AATTATA
* *
50883559 TAAAAATTTTAGAAAATTATA
1 AAAAAATTATA-AAAATTATA
* *
50883580 AAAAAATTGT-AAAATTTTA
1 AAAAAATTATAAAAATTATA
* *
50883599 TAAAAATATAAAAAAATTAT-
1 AAAAAAT-TATAAAAATTATA
** * *
50883619 AAAATTTTAT-AAAGTCATA
1 AAAAAATTATAAAAATTATA
* * *
50883638 AGAAAATTATAAAAAATGTA
1 AAAAAATTATAAAAATTATA
* *
50883658 AAGAAA-TATAAAATTTATA
1 AAAAAATTATAAAAATTATA
50883677 AAAAAATTATAAAAATTATA
1 AAAAAATTATAAAAATTATA
50883697 GTACCAAAAG
Statistics
Matches: 115, Mismatches: 32, Indels: 18
0.70 0.19 0.11
Matches are distributed among these distances:
18 11 0.10
19 56 0.49
20 33 0.29
21 15 0.13
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (20 bp):
AAAAAATTATAAAAATTATA
Found at i:50883585 original size:11 final size:11
Alignment explanation
Indices: 50883571--50883691 Score: 52
Period size: 11 Copynumber: 12.2 Consensus size: 11
50883561 AAAATTTTAG
50883571 AAAATTATAAA
1 AAAATTATAAA
*
50883582 AAAATTGT---
1 AAAATTATAAA
* *
50883590 AAAATTTTATA
1 AAAATTATAAA
50883601 AAAA-TATAAA
1 AAAATTATAAA
50883611 AAAATTAT---
1 AAAATTATAAA
* *
50883619 AAAATT-TTAT
1 AAAATTATAAA
* * *
50883629 AAAGTCATAAG
1 AAAATTATAAA
50883640 AAAATTAT-AA
1 AAAATTATAAA
*
50883650 AAAA-TGTAAA
1 AAAATTATAAA
*
50883660 GAAA-TAT--A
1 AAAATTATAAA
*
50883668 AAATTTATAAA
1 AAAATTATAAA
50883679 AAAATTATAAA
1 AAAATTATAAA
50883690 AA
1 AA
50883692 TTATAGTACC
Statistics
Matches: 81, Mismatches: 17, Indels: 24
0.66 0.14 0.20
Matches are distributed among these distances:
7 1 0.01
8 16 0.20
9 5 0.06
10 24 0.30
11 35 0.43
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (11 bp):
AAAATTATAAA
Found at i:50883593 original size:29 final size:29
Alignment explanation
Indices: 50883522--50883651 Score: 131
Period size: 29 Copynumber: 4.5 Consensus size: 29
50883512 AAGTTTTAAT
*
50883522 AAAAAA-TATAGAAATTATTA-AAAATTA-G
1 AAAAAATTATA-AAATT-TTATAAAATTATA
* * *
50883550 AAAGAATTTTAAAAATTTTAGAAAATTATA
1 AAAAAATTAT-AAAATTTTATAAAATTATA
* *
50883580 AAAAAATTGTAAAATTTTATAAAAATATA
1 AAAAAATTATAAAATTTTATAAAATTATA
* *
50883609 AAAAAATTATAAAATTTTATAAAGTCATA
1 AAAAAATTATAAAATTTTATAAAATTATA
*
50883638 AGAAAATTATAAAA
1 AAAAAATTATAAAA
50883652 AATGTAAAGA
Statistics
Matches: 86, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
28 8 0.09
29 69 0.80
30 9 0.10
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (29 bp):
AAAAAATTATAAAATTTTATAAAATTATA
Found at i:50883692 original size:48 final size:50
Alignment explanation
Indices: 50883560--50883696 Score: 131
Period size: 50 Copynumber: 2.8 Consensus size: 50
50883550 AAAGAATTTT
* * * *
50883560 AAAAATTTTAGAAAATTATAAAAAAATTGT-AAAATTTTATAAAAATATAA
1 AAAAATTATA-AAATTTATAAAAAAATTATAAAAATTATATAAAAATATAA
* * * *
50883610 AAAAATTATAAAATTT-T-ATAAAGTCATAAGAAAATTATA-AAAAATGTAA
1 AAAAATTATAAAATTTATAAAAAAATTAT-A-AAAATTATATAAAAATATAA
*
50883659 AGAAA-TATAAAATTTATAAAAAAATTATAAAAATTATA
1 AAAAATTATAAAATTTATAAAAAAATTATAAAAATTATA
50883697 GTACCAAAAG
Statistics
Matches: 70, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
47 6 0.09
48 20 0.29
49 20 0.29
50 24 0.34
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (50 bp):
AAAAATTATAAAATTTATAAAAAAATTATAAAAATTATATAAAAATATAA
Found at i:50883919 original size:20 final size:20
Alignment explanation
Indices: 50883882--50883920 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
50883872 TATACATTTT
*
50883882 ATATTTTTTCCTAATTTTAA
1 ATATTTTTTCATAATTTTAA
* *
50883902 ATATTTTTTTATATTTTTA
1 ATATTTTTTCATAATTTTA
50883921 TTAAAATTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (20 bp):
ATATTTTTTCATAATTTTAA
Found at i:50883973 original size:9 final size:9
Alignment explanation
Indices: 50883867--50883974 Score: 53
Period size: 9 Copynumber: 11.7 Consensus size: 9
50883857 TTAGAGGGTC
50883867 ATTTTTATA
1 ATTTTTATA
50883876 CA-TTTTATA
1 -ATTTTTATA
* *
50883885 TTTTTTCCTA
1 ATTTTT-ATA
*
50883895 A-TTTTAAA
1 ATTTTTATA
*
50883903 TATTTTTTTA
1 -ATTTTTATA
50883913 TATTTTTATTAA
1 -ATTTTTA-T-A
* *
50883925 AATTTAATA
1 ATTTTTATA
50883934 ATTTTTATA
1 ATTTTTATA
* *
50883943 ACTTTTATTG
1 ATTTTTA-TA
50883953 ATTTTTAT-
1 ATTTTTATA
50883961 -TTTTTATA
1 ATTTTTATA
50883969 ATTTTT
1 ATTTTT
50883975 TTGCCACATG
Statistics
Matches: 74, Mismatches: 15, Indels: 19
0.69 0.14 0.18
Matches are distributed among these distances:
7 7 0.09
8 1 0.01
9 36 0.49
10 23 0.31
11 6 0.08
12 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.66
Consensus pattern (9 bp):
ATTTTTATA
Found at i:50890457 original size:24 final size:24
Alignment explanation
Indices: 50890430--50890476 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
50890420 TGGTCAAATC
*
50890430 AATTAGAGTACTGATTTGCAATTT
1 AATTAGAGCACTGATTTGCAATTT
50890454 AATTAGAGCACTGATTTGCAATT
1 AATTAGAGCACTGATTTGCAATT
50890477 CAATCGGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (24 bp):
AATTAGAGCACTGATTTGCAATTT
Found at i:50891536 original size:26 final size:25
Alignment explanation
Indices: 50891480--50891541 Score: 63
Period size: 27 Copynumber: 2.4 Consensus size: 25
50891470 ACTTTAGACA
* **
50891480 TTTTAAAAATTTCAATTTATTTTGCTC
1 TTTTTAAAA-TTCAATTTATTTT-AAC
50891507 TTTTTAAAATTCAATTGTATTTTAA-
1 TTTTTAAAATTCAATT-TATTTTAAC
50891532 TTTTTAAAAT
1 TTTTTAAAAT
50891542 AAAATATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 10 0.32
26 7 0.23
27 14 0.45
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.56
Consensus pattern (25 bp):
TTTTTAAAATTCAATTTATTTTAAC
Found at i:50898304 original size:14 final size:13
Alignment explanation
Indices: 50898280--50898311 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
50898270 CATATAAGAA
50898280 ATAATAAAAAATT
1 ATAATAAAAAATT
50898293 ATAATGAAAAAATT
1 ATAAT-AAAAAATT
50898307 ATAAT
1 ATAAT
50898312 TTCATATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (13 bp):
ATAATAAAAAATT
Found at i:50898314 original size:84 final size:81
Alignment explanation
Indices: 50898204--50898392 Score: 281
Period size: 84 Copynumber: 2.3 Consensus size: 81
50898194 ATTTTCATAT
* *
50898204 AAAAAATCATA-GAAAAATTATAATTTCATATAAAAATTTCCACATTATCAAATATTACAATATT
1 AAAAAATCATATAAAAAATTATAATTTCATATAAAAATTTCCACATTATCAAATATAACAATATT
50898268 TTCATATAAGAAATAA
66 TTCATATAAGAAATAA
* * * * *
50898284 TAAAAAATTATAATGAAAAAATTATAATTTCATATAAAAATTTTCACTTTATCAATTGTAACAAT
1 -AAAAAATCAT-AT-AAAAAATTATAATTTCATATAAAAATTTCCACATTATCAAATATAACAAT
50898349 ATTTTCATATAAGAAATAA
63 ATTTTCATATAAGAAATAA
50898368 AAAAAATCATATAAAAAATTATAAT
1 AAAAAATCATATAAAAAATTATAAT
50898393 GAAAAAATTA
Statistics
Matches: 97, Mismatches: 8, Indels: 6
0.87 0.07 0.05
Matches are distributed among these distances:
81 22 0.23
82 3 0.03
83 9 0.09
84 63 0.65
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.35
Consensus pattern (81 bp):
AAAAAATCATATAAAAAATTATAATTTCATATAAAAATTTCCACATTATCAAATATAACAATATT
TTCATATAAGAAATAA
Found at i:50898397 original size:14 final size:13
Alignment explanation
Indices: 50898364--50898406 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 13
50898354 CATATAAGAA
*
50898364 ATAA-AAAAAATC
1 ATAATAAAAAATT
50898376 AT-ATAAAAAATT
1 ATAATAAAAAATT
50898388 ATAATGAAAAAATT
1 ATAAT-AAAAAATT
50898402 ATAAT
1 ATAAT
50898407 TTCATATGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 1 0.04
12 11 0.41
13 2 0.07
14 13 0.48
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (13 bp):
ATAATAAAAAATT
Found at i:50901262 original size:21 final size:24
Alignment explanation
Indices: 50901219--50901266 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
50901209 AACGTATACA
*
50901219 AACAACATTTGGTTATTCATCTTC
1 AACAAAATTTGGTTATTCATCTTC
50901243 AACAAAATTT-GTT-TTC-TCTTC
1 AACAAAATTTGGTTATTCATCTTC
50901264 AAC
1 AAC
50901267 TAAACACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 8 0.35
22 3 0.13
23 3 0.13
24 9 0.39
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.42
Consensus pattern (24 bp):
AACAAAATTTGGTTATTCATCTTC
Found at i:50904577 original size:33 final size:33
Alignment explanation
Indices: 50904505--50904598 Score: 125
Period size: 33 Copynumber: 2.8 Consensus size: 33
50904495 GAGTAGAGAA
* * * * *
50904505 GGAATCAAATCGTGTATCAAAATAAGCAGTGAT
1 GGAATCTAATTGTGCATCAAAATGAGCAATGAT
50904538 GGAATCTAATTGTGCATCAAAATGAGCAATGAT
1 GGAATCTAATTGTGCATCAAAATGAGCAATGAT
* *
50904571 GGAATCTAATTATGCATGAAAATGAGCA
1 GGAATCTAATTGTGCATCAAAATGAGCA
50904599 CTAAGACCCT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.26
Consensus pattern (33 bp):
GGAATCTAATTGTGCATCAAAATGAGCAATGAT
Found at i:50907767 original size:25 final size:25
Alignment explanation
Indices: 50907737--50907803 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
50907727 CGATAAACGG
* *
50907737 TAAGCTCCTCCGAGTTGAATATCGA
1 TAAGCTCATACGAGTTGAATATCGA
* *
50907762 TAAGCTCATACGAGTTGAGTATCGG
1 TAAGCTCATACGAGTTGAATATCGA
*
50907787 TAAGCTCATAAGAGTTG
1 TAAGCTCATACGAGTTG
50907804 GAATTGGTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (25 bp):
TAAGCTCATACGAGTTGAATATCGA
Found at i:50916967 original size:22 final size:22
Alignment explanation
Indices: 50916926--50916967 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
50916916 AGATATCATC
**
50916926 GTTTGCAAAAGAAATGTAAATT
1 GTTTGCAAAAGAAACATAAATT
*
50916948 GTTTGCAAGAGAAACATAAA
1 GTTTGCAAAAGAAACATAAA
50916968 GGAAAATTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.48, C:0.07, G:0.19, T:0.26
Consensus pattern (22 bp):
GTTTGCAAAAGAAACATAAATT
Found at i:50918604 original size:22 final size:22
Alignment explanation
Indices: 50918579--50918625 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
50918569 TGCACTAATG
50918579 AACAAAGAGCAC-TAAAGTGCTA
1 AACAAAGAGCACATAAA-TGCTA
* *
50918601 AACAGAGAGCACATATATGCTA
1 AACAAAGAGCACATAAATGCTA
50918623 AAC
1 AAC
50918626 GGATAGCACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.49, C:0.19, G:0.17, T:0.15
Consensus pattern (22 bp):
AACAAAGAGCACATAAATGCTA
Found at i:50919631 original size:5 final size:5
Alignment explanation
Indices: 50919621--50919682 Score: 94
Period size: 5 Copynumber: 12.8 Consensus size: 5
50919611 TGTTTGTTTT
50919621 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TAT-A TA-ATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA-A
50919670 TATAA TAT-A TATA
1 TATAA TATAA TATA
50919683 CTTAAATTTT
Statistics
Matches: 53, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
4 7 0.13
5 45 0.85
6 1 0.02
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:50919639 original size:15 final size:14
Alignment explanation
Indices: 50919621--50919719 Score: 91
Period size: 15 Copynumber: 7.1 Consensus size: 14
50919611 TGTTTGTTTT
50919621 TATAATATAATATAA
1 TATAATATAATAT-A
50919636 TATAATATAATATAA
1 TATAATATAATAT-A
50919651 TATAATATAATATA
1 TATAATATAATATA
50919665 TA-ATATATAATATA
1 TATA-ATATAATATA
*
50919679 TATACT-TAA-AT-
1 TATAATATAATATA
*
50919690 TTTAA-ATAATATTA
1 TATAATATAATA-TA
*
50919704 TTATATTATAATATA
1 -TATAATATAATATA
50919719 T
1 T
50919720 TTTAACTTTA
Statistics
Matches: 71, Mismatches: 5, Indels: 17
0.76 0.05 0.18
Matches are distributed among these distances:
11 6 0.08
12 3 0.04
13 5 0.07
14 17 0.24
15 34 0.48
16 6 0.08
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (14 bp):
TATAATATAATATA
Found at i:50919667 original size:7 final size:7
Alignment explanation
Indices: 50919625--50919680 Score: 62
Period size: 7 Copynumber: 7.7 Consensus size: 7
50919615 TGTTTTTATA
50919625 ATATAAT
1 ATATAAT
50919632 ATA-ATAT
1 ATATA-AT
50919639 AATATAAT
1 -ATATAAT
50919647 ATA-ATAT
1 ATATA-AT
50919654 AATATAAT
1 -ATATAAT
50919662 ATATAAT
1 ATATAAT
50919669 ATATAAT
1 ATATAAT
50919676 ATATA
1 ATATA
50919681 TACTTAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
6 2 0.05
7 29 0.67
8 10 0.23
9 2 0.05
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
ATATAAT
Found at i:50919711 original size:8 final size:8
Alignment explanation
Indices: 50919620--50919717 Score: 55
Period size: 7 Copynumber: 12.1 Consensus size: 8
50919610 TTGTTTGTTT
50919620 TTATAATA
1 TTATAATA
50919628 TAATATAATA
1 T--TATAATA
50919638 TAATATAATA
1 T--TATAATA
*
50919648 TAAT-ATA
1 TTATAATA
*
50919655 ATATAATA
1 TTATAATA
50919663 -TATAATA
1 TTATAATA
50919670 -TATAATA
1 TTATAATA
50919677 -TAT-ATA
1 TTATAATA
*
50919683 CTTA-AATT
1 -TTATAATA
50919691 TTAAATAATA
1 TT--ATAATA
*
50919701 TTATTATA
1 TTATAATA
50919709 TTATAATA
1 TTATAATA
50919717 T
1 T
50919718 ATTTTAACTT
Statistics
Matches: 74, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
6 3 0.04
7 24 0.32
8 23 0.31
9 1 0.01
10 23 0.31
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (8 bp):
TTATAATA
Found at i:50919720 original size:10 final size:10
Alignment explanation
Indices: 50919620--50919720 Score: 79
Period size: 10 Copynumber: 10.2 Consensus size: 10
50919610 TTGTTTGTTT
50919620 TTATAATATA
1 TTATAATATA
*
50919630 ATATAATATA
1 TTATAATATA
*
50919640 ATATAATATA
1 TTATAATATA
*
50919650 ATATAATATAA
1 TTATAATAT-A
50919661 TATATAATATA
1 T-TATAATATA
*
50919672 TAATATATATA
1 TTATA-ATATA
50919683 CTTA-AAT-T-
1 -TTATAATATA
50919691 TTA-AATAATA
1 TTATAAT-ATA
50919701 TTAT--TATA
1 TTATAATATA
50919709 TTATAATATA
1 TTATAATATA
50919719 TT
1 TT
50919721 TTAACTTTAG
Statistics
Matches: 77, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
7 6 0.08
8 7 0.09
9 3 0.04
10 42 0.55
11 9 0.12
12 10 0.13
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (10 bp):
TTATAATATA
Found at i:50920388 original size:57 final size:58
Alignment explanation
Indices: 50920300--50920417 Score: 147
Period size: 57 Copynumber: 2.1 Consensus size: 58
50920290 AATTTTCAAG
*
50920300 TCATTTTGATTTTGGAGAAAACTACATTCATTTTC-AAATG-TT-TCCATTTCTCCATTT
1 TCATTTTCATTTTGGAGAAAACTACATTCA-TTTCAAAATGATTAT-CATTTCTCCATTT
*
50920357 TCATTTTCATTTTGGAGAAAA-T-CATAATCATTTCAAAATGATTATCATTTCTCTATTT
1 TCATTTTCATTTTGGAGAAAACTACAT--TCATTTCAAAATGATTATCATTTCTCCATTT
50920415 TCA
1 TCA
50920418 CCACTTCTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
55 3 0.06
56 5 0.09
57 28 0.52
58 17 0.31
59 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.47
Consensus pattern (58 bp):
TCATTTTCATTTTGGAGAAAACTACATTCATTTCAAAATGATTATCATTTCTCCATTT
Found at i:50923722 original size:52 final size:48
Alignment explanation
Indices: 50923703--50923905 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
50923693 TGACAAGTGG
* *
50923703 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
50923749 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
50923801 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
50923847 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
50923893 AAAGTGATAAGTG
1 AAAGTGATAAGTG
50923906 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:50923757 original size:98 final size:98
Alignment explanation
Indices: 50923637--50923905 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
50923627 TTTGAGTACT
*
50923637 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
50923702 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
50923735 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
50923800 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
50923833 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
50923898 GATAAGTG
65 GAAAAGTG
50923906 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:50923913 original size:37 final size:37
Alignment explanation
Indices: 50923869--50924014 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
50923859 GATAGCTTTA
*
50923869 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
50923906 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
50923943 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
50923980 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
50924015 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:50925345 original size:58 final size:58
Alignment explanation
Indices: 50925268--50925435 Score: 237
Period size: 58 Copynumber: 3.0 Consensus size: 58
50925258 CATGTGAACA
50925268 TGTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
1 TGTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
50925327 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATA--
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
* * *
50925383 TGTG--A--T--TT-CGTGTAAGACCATAGTTGGGCTATGGCATCGGTATGTGATTTG
1 TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
50925434 TG
1 TG
50925436 ATTACGTGTA
Statistics
Matches: 104, Mismatches: 3, Indels: 12
0.87 0.03 0.10
Matches are distributed among these distances:
49 38 0.37
50 2 0.02
51 2 0.02
52 1 0.01
54 1 0.01
56 4 0.04
58 51 0.49
59 5 0.05
ACGTcount: A:0.23, C:0.13, G:0.31, T:0.33
Consensus pattern (58 bp):
TGTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAAGTGATATG
Found at i:50925377 original size:28 final size:28
Alignment explanation
Indices: 50925287--50925377 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
50925277 GTGATTCCGT
50925287 GTAAGACCATAGCTGGGCTATGGCATCG
1 GTAAGACCATAGCTGGGCTATGGCATCG
** * *
50925315 GTAAG-TGATATG-TGTGATATGTG-ATTCCG
1 GTAAGACCATA-GCTGGGCTATG-GCA-T-CG
50925344 TGTAAGACCATAGCTGGGCTATGGCATCG
1 -GTAAGACCATAGCTGGGCTATGGCATCG
50925373 GTAAG
1 GTAAG
50925378 TGATATGTGA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 11 0.23
28 13 0.28
29 4 0.09
30 8 0.17
31 11 0.23
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (28 bp):
GTAAGACCATAGCTGGGCTATGGCATCG
Found at i:50925400 original size:49 final size:49
Alignment explanation
Indices: 50925328--50925470 Score: 232
Period size: 49 Copynumber: 2.9 Consensus size: 49
50925318 AGTGATATGT
* *
50925328 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
50925377 GTGATATGTGATTTCGTGTAAGACCATAGTTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
* *
50925426 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCG
50925471 AGAAAACGAA
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 88 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (49 bp):
GTGATATGTGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGGTAA
Found at i:50928681 original size:52 final size:48
Alignment explanation
Indices: 50928662--50928864 Score: 265
Period size: 46 Copynumber: 4.3 Consensus size: 48
50928652 TGACAAGTGG
* *
50928662 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
50928708 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTGA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-A---A
* *
50928760 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
** *
50928806 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC--
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
50928852 AAAGTGATAAGTG
1 AAAGTGATAAGTG
50928865 GCTACACTTA
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 100 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (48 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAA
Found at i:50928716 original size:98 final size:98
Alignment explanation
Indices: 50928596--50928864 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
50928586 TTTGAGTACT
*
50928596 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
50928661 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
50928694 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
50928759 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
50928792 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGAC-AAGT
*
50928857 GATAAGTG
65 GAAAAGTG
50928865 GCTACACTTA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 149 0.93
99 11 0.07
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:50928872 original size:37 final size:37
Alignment explanation
Indices: 50928828--50928973 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
50928818 GATAGCTTTA
*
50928828 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
50928865 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
*
50928902 GCTACACTTATCTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
50928939 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
50928974 ATCATACGTA
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 89 0.86
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:50930634 original size:30 final size:30
Alignment explanation
Indices: 50930598--50930657 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
50930588 TAGCATGGGT
50930598 TATATTAAAAATGGATCACACGACTAAGGC
1 TATATTAAAAATGGATCACACGACTAAGGC
50930628 TATATTAAAAATGGATCACACGACTAAGGC
1 TATATTAAAAATGGATCACACGACTAAGGC
50930658 CAATTTGGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.23
Consensus pattern (30 bp):
TATATTAAAAATGGATCACACGACTAAGGC
Found at i:50945839 original size:39 final size:39
Alignment explanation
Indices: 50945795--50945871 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
50945785 ATCCTTTCAG
* *
50945795 TCCCACTAAGAATTCTGGTTAATTTTCCATTTTGTTGAA
1 TCCCACTAAGAATTCTAGTAAATTTTCCATTTTGTTGAA
* *
50945834 TCCCACTAAGCATTCTAGTAAATTTTGCATTTTGTTGA
1 TCCCACTAAGAATTCTAGTAAATTTTCCATTTTGTTGA
50945872 CTGACTGGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.43
Consensus pattern (39 bp):
TCCCACTAAGAATTCTAGTAAATTTTCCATTTTGTTGAA
Found at i:50950419 original size:17 final size:18
Alignment explanation
Indices: 50950394--50950432 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
50950384 TAAAATATTA
*
50950394 AAAACAT-AAAATAAAAT
1 AAAACATAAAAACAAAAT
*
50950411 AAAAGATAAAAACAAAAT
1 AAAACATAAAAACAAAAT
50950429 AAAA
1 AAAA
50950433 TTATTATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.79, C:0.05, G:0.03, T:0.13
Consensus pattern (18 bp):
AAAACATAAAAACAAAAT
Found at i:50953115 original size:24 final size:25
Alignment explanation
Indices: 50953073--50953125 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
50953063 AATTAAGAGC
* *
50953073 TAAAGTGATTAAAATAAATAAATTT
1 TAAAGTGATTAAAAGAAATAAATGT
50953098 TAAAGTGA-TAAAAGAAATAAATGT
1 TAAAGTGATTAAAAGAAATAAATGT
50953122 TAAA
1 TAAA
50953126 AGCTAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.30
Consensus pattern (25 bp):
TAAAGTGATTAAAAGAAATAAATGT
Found at i:50961244 original size:29 final size:27
Alignment explanation
Indices: 50961210--50961264 Score: 92
Period size: 29 Copynumber: 2.0 Consensus size: 27
50961200 ACTTTTAACT
50961210 TTTAAAAATAAAAAATATATGTATTTTAA
1 TTTAAAAATAAAAAATATA-GT-TTTTAA
50961239 TTTAAAAATAAAAAATATAGTTTTTA
1 TTTAAAAATAAAAAATATAGTTTTTA
50961265 TTCGAATTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 5 0.19
28 2 0.08
29 19 0.73
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (27 bp):
TTTAAAAATAAAAAATATAGTTTTTAA
Found at i:50963079 original size:18 final size:18
Alignment explanation
Indices: 50963056--50963094 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
50963046 AGATAGGTAA
50963056 AATCGAATT-AATTTGGTT
1 AATCG-ATTGAATTTGGTT
50963074 AATCGATTGAATTTGGTT
1 AATCGATTGAATTTGGTT
50963092 AAT
1 AAT
50963095 TGATCTGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.44
Consensus pattern (18 bp):
AATCGATTGAATTTGGTT
Found at i:50963879 original size:25 final size:25
Alignment explanation
Indices: 50963846--50963900 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
50963836 TTTGCACAAT
* *
50963846 AATGAACCTAGACGAATGATTGTCC
1 AATGCACCTAGACAAATGATTGTCC
*
50963871 AATGCACCTAGACAAATGGTTGTCC
1 AATGCACCTAGACAAATGATTGTCC
50963896 -ATGCA
1 AATGCA
50963901 TTTGAACCTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 5 0.19
25 22 0.81
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (25 bp):
AATGCACCTAGACAAATGATTGTCC
Found at i:50964148 original size:15 final size:18
Alignment explanation
Indices: 50964130--50964169 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 18
50964120 AGGGCATGAC
50964130 ATATTTTA-TTG-TTA-A
1 ATATTTTATTTGTTTATA
50964145 ATA-TTTATTTGTTTATA
1 ATATTTTATTTGTTTATA
50964162 ATATTTTA
1 ATATTTTA
50964170 GTCTTTATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 4 0.19
15 6 0.29
16 3 0.14
17 4 0.19
18 4 0.19
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
ATATTTTATTTGTTTATA
Found at i:50964407 original size:35 final size:35
Alignment explanation
Indices: 50964361--50964449 Score: 178
Period size: 35 Copynumber: 2.5 Consensus size: 35
50964351 AAACTGTATT
50964361 ATTAGTGATAATTATGTCATGTTCTTAATATGTAA
1 ATTAGTGATAATTATGTCATGTTCTTAATATGTAA
50964396 ATTAGTGATAATTATGTCATGTTCTTAATATGTAA
1 ATTAGTGATAATTATGTCATGTTCTTAATATGTAA
50964431 ATTAGTGATAATTATGTCA
1 ATTAGTGATAATTATGTCA
50964450 CACTCAGAAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 54 1.00
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.45
Consensus pattern (35 bp):
ATTAGTGATAATTATGTCATGTTCTTAATATGTAA
Found at i:50978563 original size:192 final size:192
Alignment explanation
Indices: 50978336--50978719 Score: 637
Period size: 192 Copynumber: 2.0 Consensus size: 192
50978326 TTTTTTTTAA
*
50978336 AAATTTTAAATATATTAAAAAAGTGTTGTAAAAGGAGATAGGCAGCTTTGGAAACTGGTGGCGCC
1 AAATTTTAAATATATTAAAAAAGTGTTGCAAAAGGAGATAGGCAGCTTTGGAAACTGGTGGCGCC
* ** *
50978401 AATTTA-TTAGGCTCTATCAGAAAATGA-TTTTTTATTAGTCTCCTTATTTTTTTAAAAATTATA
66 AATTTATTTA-ACTCTATCAGAAAATGATTTTTTTAAAAGTCTCCTTA-TTTTTTAAAAATTACA
50978464 GTATTTTCTTGGTATTTATATAGGTGACACTATTCTACATGGCTCCGCCAAAAAATTAATTTTT
129 GTATTTTCTTGGTATTTATATAGGTGACACTATTCTACATGGCTCCGCCAAAAAATTAATTTTT
* * *
50978528 AAATTTTAAATATATTAAAAAAGTGTTGCAAAAGGAGATAGGTAGCTTTGGAAACTGGTGGCTCT
1 AAATTTTAAATATATTAAAAAAGTGTTGCAAAAGGAGATAGGCAGCTTTGGAAACTGGTGGCGCC
50978593 AATTTATTTAACTCTATCAGAAAATGATTTTTTTAAAAGTCTCCTTATTTTTTAAAAATTACAGT
66 AATTTATTTAACTCTATCAGAAAATGATTTTTTTAAAAGTCTCCTTATTTTTTAAAAATTACAGT
* * *
50978658 ATTTTCTTGGTATTTATATAGGTGACGCTATTCTACATGGCTCCGCTAAAAAATTGATTTTT
131 ATTTTCTTGGTATTTATATAGGTGACACTATTCTACATGGCTCCGCCAAAAAATTAATTTTT
50978720 TTAATCCTGA
Statistics
Matches: 179, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
192 159 0.89
193 20 0.11
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (192 bp):
AAATTTTAAATATATTAAAAAAGTGTTGCAAAAGGAGATAGGCAGCTTTGGAAACTGGTGGCGCC
AATTTATTTAACTCTATCAGAAAATGATTTTTTTAAAAGTCTCCTTATTTTTTAAAAATTACAGT
ATTTTCTTGGTATTTATATAGGTGACACTATTCTACATGGCTCCGCCAAAAAATTAATTTTT
Found at i:50979075 original size:9 final size:10
Alignment explanation
Indices: 50979059--50979108 Score: 64
Period size: 10 Copynumber: 4.7 Consensus size: 10
50979049 TATTTATTAT
50979059 ATTAAAAAAC
1 ATTAAAAAAC
50979069 ATTAAAAAAC
1 ATTAAAAAAC
50979079 ATTAAAATATAC
1 ATTAAAA-A-AC
*
50979091 ACTAAAAAAAC
1 A-TTAAAAAAC
50979102 ATTAAAA
1 ATTAAAA
50979109 TAAAAATTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 22 0.63
11 4 0.11
12 4 0.11
13 5 0.14
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.22
Consensus pattern (10 bp):
ATTAAAAAAC
Found at i:50979339 original size:6 final size:6
Alignment explanation
Indices: 50979328--50979434 Score: 214
Period size: 6 Copynumber: 17.8 Consensus size: 6
50979318 TTAGTGATTT
50979328 AATATA AATATA AATATA AATATA AATATA AATATA AATATA AATATA
1 AATATA AATATA AATATA AATATA AATATA AATATA AATATA AATATA
50979376 AATATA AATATA AATATA AATATA AATATA AATATA AATATA AATATA
1 AATATA AATATA AATATA AATATA AATATA AATATA AATATA AATATA
50979424 AATATA AATAT
1 AATATA AATAT
50979435 TATTTAACAT
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 101 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AATATA
Found at i:50980007 original size:37 final size:37
Alignment explanation
Indices: 50979951--50980021 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
50979941 TGCTAAGTTT
50979951 AAGAACTAACTTAGACAAAAAGAAAATTTAAACCTTC
1 AAGAACTAACTTAGACAAAAAGAAAATTTAAACCTTC
* *
50979988 AAGAACTAATTTAGGCAAAAAGAAAATTTAAACC
1 AAGAACTAACTTAGACAAAAAGAAAATTTAAACC
50980022 CCATTTTGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.21
Consensus pattern (37 bp):
AAGAACTAACTTAGACAAAAAGAAAATTTAAACCTTC
Found at i:50982260 original size:26 final size:26
Alignment explanation
Indices: 50982199--50982261 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
50982189 TTACCCATTA
* * *
50982199 TAAAATTTTAATGATTTTACTCTCAG
1 TAAAATTTTGACGATTTTACTCCCAG
*
50982225 TAAAATTTTGACGATTTTACTCCCGG
1 TAAAATTTTGACGATTTTACTCCCAG
50982251 TAAAATTTTGA
1 TAAAATTTTGA
50982262 GAAAATTCGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (26 bp):
TAAAATTTTGACGATTTTACTCCCAG
Found at i:50985932 original size:15 final size:17
Alignment explanation
Indices: 50985902--50985933 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
50985892 GCTTGGTCAT
50985902 ACGGTCTTGTGACACAC
1 ACGGTCTTGTGACACAC
50985919 ACGG-CTTG-GACACAC
1 ACGGTCTTGTGACACAC
50985934 GACCATGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (17 bp):
ACGGTCTTGTGACACAC
Found at i:50988610 original size:21 final size:22
Alignment explanation
Indices: 50988584--50988633 Score: 75
Period size: 21 Copynumber: 2.3 Consensus size: 22
50988574 TAAAAATCAA
50988584 TATATTATTAGGTGCAATAC-T
1 TATATTATTAGGTGCAATACAT
*
50988605 TATATTATTAGGTGTAATACAT
1 TATATTATTAGGTGCAATACAT
50988627 TAATATT
1 T-ATATT
50988634 TAACATATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 19 0.73
22 2 0.08
23 5 0.19
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.46
Consensus pattern (22 bp):
TATATTATTAGGTGCAATACAT
Found at i:50991432 original size:799 final size:801
Alignment explanation
Indices: 50990081--50991674 Score: 2994
Period size: 799 Copynumber: 2.0 Consensus size: 801
50990071 TTAGCAGAGA
50990081 GCGTTCTATTATTCAGGCTATTAATTTCTACCCTCTAAGAACATTTTGAGGCTATTAATTTCTAG
1 GCGTTCTATTATTCAGGCTATTAATTTCTACCCTCTAAGAACATTTTGAGGCTATTAATTTCTAG
50990146 TCTCAAAAACCAATTCTTTAGTCAATTGAATATGGTTAGCATACGAGAAAATGAACGAACAAAAT
66 TCTCAAAAACCAATTCTTTAGTCAATTGAATATGGTTAGCATACGAGAAAATGAACGAACAAAAT
50990211 GGATCAATATCAGTGAAAACAAGTAACACATTTTCAAACAAACGAACAAACAAACGAATCAATAT
131 GGATCAATATCAGTGAAAACAAGTAACACATTTT-----------ACAAACAAACGAATCAATAT
50990276 CAGTGAAAGCAAGTGGAACAAAAACATAATTCAACAAAGATCTTATCACTGTTTCGTTTTTCCTT
185 CAGTGAAAGCAAGTGGAACAAAAACATAATTCAACAAAGATCTTATCACTGTTTCGTTTTTCCTT
*
50990341 ACAATTTGAAGGATTTGAAGGATCATAATCTCGTATGATGAAACTCGATTTGAATGAATAAATGA
250 ACAATTTCAAGGATTTGAAGGATCATAATCTCGTATGATGAAACTCGATTTGAATGAATAAATGA
50990406 ATCGATCAACAGCTTATGTTTAGGAATTTTCAATTTCGAAAGCAGTTTACTATGGATAAGAACAG
315 ATCGATCAACAGCTTATGTTTAGGAATTTTCAATTTCGAAAGCAGTTTACTATGGATAAGAACAG
50990471 AAGTCACATTGGACCAAAAGTAAAATCCTACGTTCGAAATTCAAAGTTCAAACCGTCAAACAAAG
380 AAGTCACATTGGACCAAAAGTAAAATCCTACGTTCGAAATTCAAAGTTCAAACCGTCAAACAAAG
50990536 ACCAGACCTAAATTAACAATTAGGCATCAAAGCAAAACTTCAAACGTTGAATTGAAGGTCACACA
445 ACCAGACCTAAATTAACAATTAGGCATCAAAGCAAAACTTCAAACGTTGAATTGAAGGTCACACA
50990601 ATACTGTAAAGGTAGGTGGTTGCTATGCTAAAATTCAAACCCAAACTCCAAATATTGTCGACTTT
510 ATACTGTAAAGGTAGGTGGTTGCTATGCTAAAATTCAAACCCAAACTCCAAATATTGTCGACTTT
* *
50990666 ATAGTCAAATTACAAAGATAAAAGATGGGTTTCATGCACAATTAACCATGAAAATGGCTTGAAGC
575 ATAGTCAAATTACAAAGATAAAAGATAGGTTTCATGCAAAATTAACCATGAAAATGGCTTGAAGC
50990731 ATTCATGAATCATGAGACCATTACCAGGAAGTAAAGCACCAAAATTAAGCATTCAGCAAAAGATA
640 ATTCATGAATCATGAGACCATTACCAGGAAGTAAAGCACCAAAATTAAGCATTCAGCAAAAGATA
*
50990796 GCTTACTATAAATGGCTAAAGCATCCGTTAAGAGACCACACTCTAAGTCTGAAAACCAACACAAA
705 GCTTACTATAAATAGCTAAAGCATCCGTTAAGAGACCACACTCTAAGTCTGAAAACCAACACAAA
50990861 ACAAGGGTTCTTTTATCAAATTACAGCACCTC
770 ACAAGGGTTCTTTTATCAAATTACAGCACCTC
*
50990893 GCGTTCTATTATTCAGGCTATTAATTTCTACTCTCTAAGAACATTTTGAGGCTATTAATTTCTAG
1 GCGTTCTATTATTCAGGCTATTAATTTCTACCCTCTAAGAACATTTTGAGGCTATTAATTTCTAG
*
50990958 TCTCAAAAGCCAATTCTTTAGTCAATTGAATATGGTTAGCATACGAGAAAATGAACGAACAAAAT
66 TCTCAAAAACCAATTCTTTAGTCAATTGAATATGGTTAGCATACGAGAAAATGAACGAACAAAAT
50991023 GGATCAATATCAGTGAAAACAAGTAACACATTTT-CAAACAAACGAATCAATATCAGTGAAAGCA
131 GGATCAATATCAGTGAAAACAAGTAACACATTTTACAAACAAACGAATCAATATCAGTGAAAGCA
50991087 AGTGGAACAAAAACATAATTCAACAAAGATCTTATCACTGTTTCGTTTTTCCTTACAATTTCAAG
196 AGTGGAACAAAAACATAATTCAACAAAGATCTTATCACTGTTTCGTTTTTCCTTACAATTTCAAG
50991152 GATTTGAAGGATCATAATCTCGTATGATGAAACTCGATTTGAATGAATAAATGAATCGATCAACA
261 GATTTGAAGGATCATAATCTCGTATGATGAAACTCGATTTGAATGAATAAATGAATCGATCAACA
50991217 GCTTATGTTTAGGAATTTTCAATTTCG-AAGCAGTTTACTATGGATAAGAACAGAAGTCACATTG
326 GCTTATGTTTAGGAATTTTCAATTTCGAAAGCAGTTTACTATGGATAAGAACAGAAGTCACATTG
*
50991281 GATCAAAAGTAAAATCCTACGTTCGAAATTCAAAGTTCAAACCGTCAAACAAAGACCAGACCTAA
391 GACCAAAAGTAAAATCCTACGTTCGAAATTCAAAGTTCAAACCGTCAAACAAAGACCAGACCTAA
50991346 ATTAACAATTAGGCATCAAAGCAAAACTTCAAACGTTGAATTGAAGGTCACACAATACTGTAAAG
456 ATTAACAATTAGGCATCAAAGCAAAACTTCAAACGTTGAATTGAAGGTCACACAATACTGTAAAG
*
50991411 GTAGGTGGTTGCTATGCTAAAATTCAAACCCGAACTCCAAATATTGTCGACTTTATAGTCAAATT
521 GTAGGTGGTTGCTATGCTAAAATTCAAACCCAAACTCCAAATATTGTCGACTTTATAGTCAAATT
*
50991476 ACAAAGATAAAAGATAGGTTTCGTGCAAAATTAACCATGAAAATGGCTTGAAGCATTCATGAATC
586 ACAAAGATAAAAGATAGGTTTCATGCAAAATTAACCATGAAAATGGCTTGAAGCATTCATGAATC
50991541 ATGAGACCATTACCAGGAAGTAAAGCACCAAAATTAAGCATTCAGCAAAAGATAGCTTACTATAA
651 ATGAGACCATTACCAGGAAGTAAAGCACCAAAATTAAGCATTCAGCAAAAGATAGCTTACTATAA
50991606 ATAGCTAAAGCATCCGTTAAGAGACCACACTCTAAGTCTGAAAACCAACACAAAACAAGGGTTCT
716 ATAGCTAAAGCATCCGTTAAGAGACCACACTCTAAGTCTGAAAACCAACACAAAACAAGGGTTCT
50991671 TTTA
781 TTTA
50991675 CTTTTATTCA
Statistics
Matches: 773, Mismatches: 9, Indels: 13
0.97 0.01 0.02
Matches are distributed among these distances:
799 425 0.55
800 186 0.24
812 162 0.21
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (801 bp):
GCGTTCTATTATTCAGGCTATTAATTTCTACCCTCTAAGAACATTTTGAGGCTATTAATTTCTAG
TCTCAAAAACCAATTCTTTAGTCAATTGAATATGGTTAGCATACGAGAAAATGAACGAACAAAAT
GGATCAATATCAGTGAAAACAAGTAACACATTTTACAAACAAACGAATCAATATCAGTGAAAGCA
AGTGGAACAAAAACATAATTCAACAAAGATCTTATCACTGTTTCGTTTTTCCTTACAATTTCAAG
GATTTGAAGGATCATAATCTCGTATGATGAAACTCGATTTGAATGAATAAATGAATCGATCAACA
GCTTATGTTTAGGAATTTTCAATTTCGAAAGCAGTTTACTATGGATAAGAACAGAAGTCACATTG
GACCAAAAGTAAAATCCTACGTTCGAAATTCAAAGTTCAAACCGTCAAACAAAGACCAGACCTAA
ATTAACAATTAGGCATCAAAGCAAAACTTCAAACGTTGAATTGAAGGTCACACAATACTGTAAAG
GTAGGTGGTTGCTATGCTAAAATTCAAACCCAAACTCCAAATATTGTCGACTTTATAGTCAAATT
ACAAAGATAAAAGATAGGTTTCATGCAAAATTAACCATGAAAATGGCTTGAAGCATTCATGAATC
ATGAGACCATTACCAGGAAGTAAAGCACCAAAATTAAGCATTCAGCAAAAGATAGCTTACTATAA
ATAGCTAAAGCATCCGTTAAGAGACCACACTCTAAGTCTGAAAACCAACACAAAACAAGGGTTCT
TTTATCAAATTACAGCACCTC
Found at i:50999022 original size:16 final size:16
Alignment explanation
Indices: 50998969--50999024 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
50998959 CGTTTGGTTC
*
50998969 GTTGTAATGGAATAGA
1 GTTGTAATGAAATAGA
* *
50998985 GTTATAATGTAATAGA
1 GTTGTAATGAAATAGA
50999001 GTTGTAATGAAATAGA
1 GTTGTAATGAAATAGA
*
50999017 GCTGTAAT
1 GTTGTAAT
50999025 CAGTAATTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.39, C:0.02, G:0.25, T:0.34
Consensus pattern (16 bp):
GTTGTAATGAAATAGA
Found at i:50999224 original size:37 final size:37
Alignment explanation
Indices: 50999182--50999252 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
50999172 TTGTTATTAA
*
50999182 ATTTTAATAGGATTATTATTAAAAATAATTTAATCAT
1 ATTTTAATAGAATTATTATTAAAAATAATTTAATCAT
* *
50999219 ATTTTAATATAATTATTATTAAATATAATTTAAT
1 ATTTTAATAGAATTATTATTAAAAATAATTTAAT
50999253 AAAAATAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.49
Consensus pattern (37 bp):
ATTTTAATAGAATTATTATTAAAAATAATTTAATCAT
Found at i:50999289 original size:29 final size:29
Alignment explanation
Indices: 50999209--50999319 Score: 104
Period size: 29 Copynumber: 3.8 Consensus size: 29
50999199 ATTAAAAATA
* *
50999209 ATTTAATCATA-TTTTAATATAAT-TATT
1 ATTTAATAATATTTTTAATATAATATAAT
* * *
50999236 ATTAAAT-ATAATTTAATAAAAATAATATAAT
1 ATTTAATAAT-ATTT--TTAATATAATATAAT
50999267 ATTTAATAATATTTTTAATATAA-ATTAAT
1 ATTTAATAATATTTTTAATATAATA-TAAT
*
50999296 ATATAATAATATTTTTAATATAAT
1 ATTTAATAATATTTTTAATATAAT
50999320 TATTTTTATA
Statistics
Matches: 68, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
26 2 0.03
27 7 0.10
28 3 0.04
29 33 0.49
30 8 0.12
31 13 0.19
32 2 0.03
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (29 bp):
ATTTAATAATATTTTTAATATAATATAAT
Found at i:50999319 original size:43 final size:44
Alignment explanation
Indices: 50999212--50999352 Score: 136
Period size: 43 Copynumber: 3.3 Consensus size: 44
50999202 AAAAATAATT
* * *
50999212 TAATCATA-TTTTAATATAATTATTATTAAATATAATTTAATA-A
1 TAATAATATTTTTAATATAATTATT-TTTAATATAAATTAATATA
*
50999255 AAATAATATAATATTT-A-ATAA-TATTTTTAATATAAATTAATATA
1 TAATAATAT--T-TTTAATATAATTATTTTTAATATAAATTAATATA
* *
50999299 TAATAATATTTTTAATATAATTATTTTT-ATATTAATTTATAT-
1 TAATAATATTTTTAATATAATTATTTTTAATATAAATTAATATA
50999341 TAA-AATATTTTT
1 TAATAATATTTTT
50999353 GTTGTTTTAT
Statistics
Matches: 83, Mismatches: 7, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
41 12 0.14
42 5 0.06
43 37 0.45
44 20 0.24
45 4 0.05
46 2 0.02
47 3 0.04
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.52
Consensus pattern (44 bp):
TAATAATATTTTTAATATAATTATTTTTAATATAAATTAATATA
Found at i:50999338 original size:16 final size:15
Alignment explanation
Indices: 50999220--50999327 Score: 50
Period size: 16 Copynumber: 7.3 Consensus size: 15
50999210 TTTAATCATA
50999220 TTTTAATATAATTAT
1 TTTTAATATAATTAT
*
50999235 TATTAAATATAATT-T
1 T-TTTAATATAATTAT
** * *
50999250 AATAAAAATAATATAAT
1 TTTTAATATAAT-T-AT
*
50999267 ATTT-A-ATAA-TAT
1 TTTTAATATAATTAT
50999279 TTTTAATATAA--AT
1 TTTTAATATAATTAT
**
50999292 TAAT-ATATAATAATAT
1 TTTTAATATAAT--TAT
50999308 TTTTAATATAATTAT
1 TTTTAATATAATTAT
50999323 TTTTA
1 TTTTA
50999328 TATTAATTTA
Statistics
Matches: 71, Mismatches: 11, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
12 11 0.15
13 6 0.08
14 13 0.18
15 15 0.21
16 16 0.23
17 10 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TTTTAATATAATTAT
Found at i:51004399 original size:11 final size:11
Alignment explanation
Indices: 51004383--51004417 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
51004373 AAAAATAAAG
51004383 TATTTTAAAAA
1 TATTTTAAAAA
51004394 TATTTTAAAAA
1 TATTTTAAAAA
51004405 TATTTTAAAAA
1 TATTTTAAAAA
51004416 TA
1 TA
51004418 AAAAAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:51025869 original size:17 final size:17
Alignment explanation
Indices: 51025847--51025897 Score: 61
Period size: 16 Copynumber: 3.1 Consensus size: 17
51025837 AGTCGGAACC
51025847 ATATAATA-AAATATAT
1 ATATAATATAAATATAT
*
51025863 GATATAATATATATATAT
1 -ATATAATATAAATATAT
*
51025881 ATAT-ATATATATATAT
1 ATATAATATAAATATAT
51025897 A
1 A
51025898 AAAATGAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
16 13 0.41
17 12 0.38
18 7 0.22
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
ATATAATATAAATATAT
Found at i:51025871 original size:12 final size:11
Alignment explanation
Indices: 51025847--51025897 Score: 63
Period size: 10 Copynumber: 4.8 Consensus size: 11
51025837 AGTCGGAACC
*
51025847 ATATA-ATAAA
1 ATATATATATA
51025857 ATATATGATATA
1 ATATAT-ATATA
51025869 ATATATATAT-
1 ATATATATATA
51025879 ATATATATAT-
1 ATATATATATA
51025889 ATATATATA
1 ATATATATA
51025898 AAAATGAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
10 24 0.63
11 4 0.11
12 10 0.26
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (11 bp):
ATATATATATA
Found at i:51025874 original size:2 final size:2
Alignment explanation
Indices: 51025857--51025897 Score: 66
Period size: 2 Copynumber: 20.5 Consensus size: 2
51025847 ATATAATAAA
51025857 AT AT AT GAT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
51025898 AAAATGAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 1 0.03
2 34 0.92
3 2 0.05
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:51025874 original size:14 final size:13
Alignment explanation
Indices: 51025847--51025895 Score: 64
Period size: 14 Copynumber: 3.7 Consensus size: 13
51025837 AGTCGGAACC
*
51025847 ATATA-ATAAAAT
1 ATATATATAATAT
51025859 ATATGATATAATAT
1 ATAT-ATATAATAT
51025873 ATATATATATATAT
1 ATATATATA-ATAT
51025887 ATATATATA
1 ATATATATA
51025896 TAAAAATGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
12 4 0.12
13 6 0.18
14 23 0.70
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (13 bp):
ATATATATAATAT
Found at i:51026800 original size:37 final size:38
Alignment explanation
Indices: 51026727--51026800 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
51026717 ACTTCAAAAT
* *
51026727 ATTTAAAAAAATCTGTTTAAAAATAAAATATTAATTTC
1 ATTTAAAAAAATATGTTTAAAAATAAAATATAAATTTC
*
51026765 ATTTAAAAATATAT-TTTAAAAAATAAAATA-AAATTT
1 ATTTAAAAAAATATGTTT-AAAAATAAAATATAAATTT
51026801 AAAAACTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 8 0.25
38 24 0.75
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (38 bp):
ATTTAAAAAAATATGTTTAAAAATAAAATATAAATTTC
Found at i:51027057 original size:22 final size:21
Alignment explanation
Indices: 51027000--51027066 Score: 57
Period size: 21 Copynumber: 3.1 Consensus size: 21
51026990 TTATTTTTTT
* * *
51027000 AAAAGTAATTAAACAAGTTTA
1 AAAAATAATTAAATAAATTTA
*
51027021 AAAACATAGTT-AATAGAATTTA
1 AAAA-ATAATTAAATA-AATTTA
51027043 AAAAATAATTAAATAACA-TTA
1 AAAAATAATTAAATAA-ATTTA
51027064 AAA
1 AAA
51027067 CTACTTAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
21 19 0.51
22 18 0.49
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.28
Consensus pattern (21 bp):
AAAAATAATTAAATAAATTTA
Found at i:51027495 original size:21 final size:22
Alignment explanation
Indices: 51027471--51027519 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 22
51027461 AAAATTCTAC
51027471 TAAAATTA-AAAAAAAT-TAGAT
1 TAAAATTACAAAAAAATATA-AT
*
51027492 T-AAA-TACAAAAAAATATATT
1 TAAAATTACAAAAAAATATAAT
51027512 TAAAATTA
1 TAAAATTA
51027520 TTTTGATACG
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
19 2 0.09
20 13 0.57
21 6 0.26
22 2 0.09
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (22 bp):
TAAAATTACAAAAAAATATAAT
Done.