Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 162 of 203
Found at i:51287877 original size:22 final size:22
Alignment explanation
Indices: 51287852--51287896 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
51287842 TTTAATAAAA
51287852 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
51287874 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
51287896 A
1 A
51287897 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:51291653 original size:22 final size:22
Alignment explanation
Indices: 51291627--51291671 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
51291617 TTTTAATAAA
51291627 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
51291649 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
51291671 A
1 A
51291672 CATATGTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:51293757 original size:52 final size:52
Alignment explanation
Indices: 51293679--51293792 Score: 133
Period size: 52 Copynumber: 2.2 Consensus size: 52
51293669 AAAGTCTTTT
*** *
51293679 GTCCTCTTATAAATTATTGTGCTTTAC-TTT-ACTAAAGTATGAGTGAGTCATC
1 GTCCTCTTATAAATTATTAAACTTTACTTTTGA-TAAAGTATGA-TGAGTCATA
* * *
51293731 GTCCTCTTGTAAATTATTAAACTTTACTTTTGATAAAGTTTGATGTGTCATA
1 GTCCTCTTATAAATTATTAAACTTTACTTTTGATAAAGTATGATGAGTCATA
51293783 GTCCTCTTAT
1 GTCCTCTTAT
51293793 GCATTATTGT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
52 39 0.75
53 12 0.23
54 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.45
Consensus pattern (52 bp):
GTCCTCTTATAAATTATTAAACTTTACTTTTGATAAAGTATGATGAGTCATA
Found at i:51295281 original size:16 final size:15
Alignment explanation
Indices: 51295252--51295313 Score: 60
Period size: 16 Copynumber: 4.1 Consensus size: 15
51295242 AATAAATAAT
51295252 AACATT-TA-TCATA
1 AACATTATATTCATA
51295265 AACAGTTATATTCATAA
1 AACA-TTATATTCAT-A
51295282 CAACATT-TA-TCATA
1 -AACATTATATTCATA
51295296 AACAATTATATTCATA
1 AAC-ATTATATTCATA
51295312 AA
1 AA
51295314 TTTTCATTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
13 7 0.17
14 6 0.15
15 8 0.20
16 13 0.32
17 3 0.07
18 4 0.10
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (15 bp):
AACATTATATTCATA
Found at i:51295288 original size:31 final size:31
Alignment explanation
Indices: 51295247--51295312 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
51295237 AAGTAAATAA
* *
51295247 ATAATAACATTTATCATAAACAGTTATATTC
1 ATAACAACATTTATCATAAACAATTATATTC
51295278 ATAACAACATTTATCATAAACAATTATATTC
1 ATAACAACATTTATCATAAACAATTATATTC
51295309 ATAA
1 ATAA
51295313 ATTTTCATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (31 bp):
ATAACAACATTTATCATAAACAATTATATTC
Found at i:51295294 original size:15 final size:14
Alignment explanation
Indices: 51295247--51295297 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 14
51295237 AAGTAAATAA
51295247 ATAATAACATTTATC
1 ATAA-AACATTTATC
51295262 AT-AAACAGTTATATTC
1 ATAAAACA-TT-TA-TC
51295278 ATAACAACATTTATC
1 ATAA-AACATTTATC
51295293 ATAAA
1 ATAAA
51295298 CAATTATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
13 4 0.13
14 4 0.13
15 10 0.32
16 6 0.19
17 3 0.10
18 4 0.13
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.35
Consensus pattern (14 bp):
ATAAAACATTTATC
Found at i:51295649 original size:49 final size:50
Alignment explanation
Indices: 51295585--51295816 Score: 155
Period size: 50 Copynumber: 4.7 Consensus size: 50
51295575 CAAAGCTATG
* * * *
51295585 TCCCAGACATAGTCTTACATGGGATGTT-TCTTGTA-CTGCCAATGTCATA
1 TCCCAGACATGGTCTTACATGAGA-GTTCTCATATAGCTGCCAATGTCATA
* * * *
51295634 TCCCAGATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGTCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGCTGCCAATGTCATA
** ** * * * * * *
51295684 TCCCAGACATGGTCTTACGGGAGACCTCTCATCTCGGTGTCAACG-CTATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGCTGCCAATGTC-ATA
* ** * * * * * *
51295734 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGCTGCCAATGTCATA
* **
51295784 TCCCAAACATGGTCTTACATGAGACCTCTCATA
1 TCCCAGACATGGTCTTACATGAGAGTTCTCATA
51295817 ATCTCAATGA
Statistics
Matches: 154, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
48 3 0.02
49 27 0.18
50 123 0.80
51 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGAGAGTTCTCATATAGCTGCCAATGTCATA
Found at i:51295689 original size:50 final size:50
Alignment explanation
Indices: 51295621--51295816 Score: 223
Period size: 50 Copynumber: 3.9 Consensus size: 50
51295611 TTTCTTGTAC
* * * **
51295621 TGCCAATGTCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGTCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATAGG
* * ** * *
51295671 TGCCCATGTCATGTCCCAGACATGGTCTTACGGGAGACCTCTCATCTCGG
1 TGCCAACGTCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATAGG
* * * *
51295721 TGTCAACG-CTATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGTC-ATGTCCCAGACATGGTCTTACATGAGACCTCTCATATAGG
* *
51295771 TGCCAACGCCATGTCCCAAACATGGTCTTACATGAGACCTCTCATA
1 TGCCAACGTCATGTCCCAGACATGGTCTTACATGAGACCTCTCATA
51295817 ATCTCAATGA
Statistics
Matches: 125, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 1 0.01
50 123 0.98
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAACGTCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATAGG
Found at i:51295749 original size:100 final size:100
Alignment explanation
Indices: 51295634--51295815 Score: 256
Period size: 100 Copynumber: 1.8 Consensus size: 100
51295624 CAATGTCATA
* ** * * * *
51295634 TCCCAGATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGTCATGTCCCAGACATGGTCT
1 TCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCATGTCCCAAACATGGTCT
*
51295699 TACGGGAGACCTCTCATCTCGGTGTCAACGCTATG
66 TACAGGAGACCTCTCATCTCGGTGTCAACGCTATG
* * *
51295734 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACATGGTCT
1 TCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCATGTCCCAAACATGGTCT
*
51295799 TACATGAGACCTCTCAT
66 TACAGGAGACCTCTCAT
51295816 AATCTCAATG
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
100 70 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (100 bp):
TCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCATGTCCCAAACATGGTCT
TACAGGAGACCTCTCATCTCGGTGTCAACGCTATG
Found at i:51302758 original size:20 final size:22
Alignment explanation
Indices: 51302733--51302777 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
51302723 ATTGAAATCT
* *
51302733 TATAAATTTTA-ATTAAT-AAA
1 TATAAAATTTATATGAATGAAA
51302753 TATAAAATTTATATGAATGAAA
1 TATAAAATTTATATGAATGAAA
51302775 TAT
1 TAT
51302778 TTAATTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.48
21 5 0.24
22 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.42
Consensus pattern (22 bp):
TATAAAATTTATATGAATGAAA
Found at i:51303470 original size:18 final size:18
Alignment explanation
Indices: 51303433--51303472 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
51303423 CAAATAATTT
* * *
51303433 AAAAATTATAAAATATTC
1 AAAAATTAAAAAAAAATC
51303451 AAAAATTAAAAAAAAATC
1 AAAAATTAAAAAAAAATC
51303469 AAAA
1 AAAA
51303473 CACAAAAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAATTAAAAAAAAATC
Found at i:51304012 original size:21 final size:20
Alignment explanation
Indices: 51303979--51304017 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
51303969 TTATTATTGT
51303979 ACCTAAAATTGAAACCCTAA
1 ACCTAAAATTGAAACCCTAA
*
51303999 ACCTTAAATATGAAACCCT
1 ACCTAAAAT-TGAAACCCT
51304018 CACGTCAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.46, C:0.26, G:0.05, T:0.23
Consensus pattern (20 bp):
ACCTAAAATTGAAACCCTAA
Found at i:51310404 original size:35 final size:35
Alignment explanation
Indices: 51310358--51310428 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
51310348 GGTATTACAT
51310358 AACCGAATTTCCAATTCATGGAGACCCTTTCAACC
1 AACCGAATTTCCAATTCATGGAGACCCTTTCAACC
51310393 AACCGAATTTCCAATTCATGGAGACCCTTTCAACC
1 AACCGAATTTCCAATTCATGGAGACCCTTTCAACC
51310428 A
1 A
51310429 TTTCACCTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.32, C:0.31, G:0.11, T:0.25
Consensus pattern (35 bp):
AACCGAATTTCCAATTCATGGAGACCCTTTCAACC
Found at i:51316144 original size:100 final size:100
Alignment explanation
Indices: 51316036--51316233 Score: 378
Period size: 100 Copynumber: 2.0 Consensus size: 100
51316026 ACCAAAAAAG
*
51316036 AAAAAAAGAAATAACTTCTCCAATTCACTAAATTGTTTTATTTTATGATTTTGTTTCTTTTGATG
1 AAAAAAAGAAATAACTTCTCCAATTCACTAAACTGTTTTATTTTATGATTTTGTTTCTTTTGATG
51316101 AAATAAAAGAGCACATAAACAAACAAATCATTACC
66 AAATAAAAGAGCACATAAACAAACAAATCATTACC
51316136 AAAAAAAGAAATAACTTCTCCAATTCACTAAACTGTTTTATTTTATGATTTTGTTTCTTTTGATG
1 AAAAAAAGAAATAACTTCTCCAATTCACTAAACTGTTTTATTTTATGATTTTGTTTCTTTTGATG
*
51316201 AAATAAAAGAGGACATAAACAAACAAATCATTA
66 AAATAAAAGAGCACATAAACAAACAAATCATTA
51316234 TGATTTTATT
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 96 1.00
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (100 bp):
AAAAAAAGAAATAACTTCTCCAATTCACTAAACTGTTTTATTTTATGATTTTGTTTCTTTTGATG
AAATAAAAGAGCACATAAACAAACAAATCATTACC
Found at i:51319207 original size:13 final size:13
Alignment explanation
Indices: 51319189--51319215 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51319179 TTATTTTAGA
51319189 TTTATTTTTATTT
1 TTTATTTTTATTT
51319202 TTTATTTTTATTT
1 TTTATTTTTATTT
51319215 T
1 T
51319216 AAAAATGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTTATTT
Found at i:51320042 original size:7 final size:6
Alignment explanation
Indices: 51320019--51320071 Score: 63
Period size: 6 Copynumber: 8.5 Consensus size: 6
51320009 TCCTCAGACA
*
51320019 TTTTAT TTTTAT TTTTAT TATTTATT TTTTAT TTATAT TTGTT-T TTTTAT
1 TTTTAT TTTTAT TTTTAT T-TTTA-T TTTTAT TTTTAT TT-TTAT TTTTAT
51320069 TTT
1 TTT
51320072 AAACAAAAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
5 2 0.05
6 28 0.68
7 9 0.22
8 2 0.05
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:51320046 original size:24 final size:26
Alignment explanation
Indices: 51320018--51320072 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
51320008 GTCCTCAGAC
51320018 ATTTTATT-TTTAT-TTT-TATTATTT
1 ATTTTATTATTTATATTTGT-TTATTT
*
51320042 ATTTT-TTATTTATATTTGTTTTTTT
1 ATTTTATTATTTATATTTGTTTATTT
51320067 ATTTTA
1 ATTTTA
51320073 AACAAAAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
23 2 0.08
24 10 0.38
25 13 0.50
26 1 0.04
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (26 bp):
ATTTTATTATTTATATTTGTTTATTT
Found at i:51320047 original size:20 final size:19
Alignment explanation
Indices: 51320019--51320071 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
51320009 TCCTCAGACA
51320019 TTTTA-TTTTTATTTTTAT
1 TTTTATTTTTTATTTTTAT
*
51320037 TATTTATTTTTTATTTATAT
1 T-TTTATTTTTTATTTTTAT
*
51320057 TTGT-TTTTTTATTTT
1 TTTTATTTTTTATTTT
51320072 AAACAAAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 11 0.37
19 6 0.20
20 13 0.43
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (19 bp):
TTTTATTTTTTATTTTTAT
Found at i:51325018 original size:13 final size:13
Alignment explanation
Indices: 51325000--51325054 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
51324990 ACCTGTCCGA
51325000 AAATAGAAATGCT
1 AAATAGAAATGCT
*
51325013 AAATAGAAATGAT
1 AAATAGAAATGCT
51325026 AAAT-GAACA-G--
1 AAATAGAA-ATGCT
51325036 AAATTAGAAATGCT
1 AAA-TAGAAATGCT
51325050 AAATA
1 AAATA
51325055 TAAAACTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
10 3 0.09
11 2 0.06
12 8 0.23
13 19 0.54
14 3 0.09
ACGTcount: A:0.58, C:0.05, G:0.15, T:0.22
Consensus pattern (13 bp):
AAATAGAAATGCT
Found at i:51325993 original size:20 final size:19
Alignment explanation
Indices: 51325968--51326006 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
51325958 TATAATTTTC
51325968 AAAAATTCAAAATATTTATA
1 AAAAATTCAAAA-ATTTATA
*
51325988 AAAAATTCTAAAATTTATA
1 AAAAATTCAAAAATTTATA
51326007 TTTTAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATTCAAAAATTTATA
Found at i:51333146 original size:19 final size:20
Alignment explanation
Indices: 51333110--51333149 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
51333100 CAAAAATCAC
51333110 AAAAAATTCAAAATATTTAT
1 AAAAAATTCAAAATATTTAT
*
51333130 AAAAAATTCTAAA-ATTTAT
1 AAAAAATTCAAAATATTTAT
51333149 A
1 A
51333150 TTTTTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAAAATTCAAAATATTTAT
Found at i:51333159 original size:25 final size:26
Alignment explanation
Indices: 51333122--51333173 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
51333112 AAAATTCAAA
*
51333122 ATATTTATAAAAAATTCTAAAA-TTT
1 ATATTTATAAAAAATTATAAAAGTTT
* *
51333147 ATATTTTTTAAAAATTATAAAAGTTT
1 ATATTTATAAAAAATTATAAAAGTTT
51333173 A
1 A
51333174 AAAAGTTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (26 bp):
ATATTTATAAAAAATTATAAAAGTTT
Found at i:51340619 original size:43 final size:43
Alignment explanation
Indices: 51340553--51340664 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
51340543 CACTTGTACA
* * *
51340553 ATGCCAATGTCCCAGAGGTGGTCTTACATGTAATCACATA-TCG
1 ATGCCAATGTCCCAGAAGTGGTCTTACACGTAAACACA-AGTCG
*
51340596 ATGCCACTGTCCCAGACAG-GGTCTTACACGTAAACACAAGTCG
1 ATGCCAATGTCCCAGA-AGTGGTCTTACACGTAAACACAAGTCG
* * *
51340639 ATGCCAACGTCCTAGACGTGGTCTTA
1 ATGCCAATGTCCCAGAAGTGGTCTTA
51340665 GACAATAACA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 2 0.03
43 55 0.95
44 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGAAGTGGTCTTACACGTAAACACAAGTCG
Found at i:51343616 original size:18 final size:18
Alignment explanation
Indices: 51343573--51343616 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
51343563 ACCCAATCCA
*
51343573 AACCCAAGTATCCAACCC
1 AACCCAATTATCCAACCC
51343591 AACCCAATTA-CCTAACCC
1 AACCCAATTATCC-AACCC
51343609 AACCCAAT
1 AACCCAAT
51343617 CATAAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 2 0.08
18 22 0.92
ACGTcount: A:0.41, C:0.43, G:0.02, T:0.14
Consensus pattern (18 bp):
AACCCAATTATCCAACCC
Found at i:51343758 original size:9 final size:10
Alignment explanation
Indices: 51343738--51343795 Score: 56
Period size: 9 Copynumber: 6.4 Consensus size: 10
51343728 GTAGTGATTC
51343738 AATTC-AGTT
1 AATTCGAGTT
51343747 AATTCGAG-T
1 AATTCGAGTT
51343756 AATTC-AGTT
1 AATTCGAGTT
51343765 AATTCG-GTT
1 AATTCGAGTT
*
51343774 AATTGGA-TT
1 AATTCGAGTT
*
51343783 AATACG-GTT
1 AATTCGAGTT
51343792 AATT
1 AATT
51343796 TTTAACCAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
8 2 0.05
9 36 0.90
10 2 0.05
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (10 bp):
AATTCGAGTT
Found at i:51343774 original size:27 final size:27
Alignment explanation
Indices: 51343738--51343795 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
51343728 GTAGTGATTC
*
51343738 AATTCAGTTAATTCGAGTAATTCAGTT
1 AATTCAGTTAATTCGAGTAATACAGTT
* * * *
51343765 AATTCGGTTAATTGGATTAATACGGTT
1 AATTCAGTTAATTCGAGTAATACAGTT
51343792 AATT
1 AATT
51343796 TTTAACCAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (27 bp):
AATTCAGTTAATTCGAGTAATACAGTT
Found at i:51343776 original size:18 final size:18
Alignment explanation
Indices: 51343738--51343795 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
51343728 GTAGTGATTC
51343738 AATTCAGTTAATTCGAG-T
1 AATTCAGTTAATTCG-GTT
51343756 AATTCAGTTAATTCGGTT
1 AATTCAGTTAATTCGGTT
* *
51343774 AATT-GGATTAATACGGTT
1 AATTCAG-TTAATTCGGTT
51343792 AATT
1 AATT
51343796 TTTAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.06
18 34 0.94
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (18 bp):
AATTCAGTTAATTCGGTT
Found at i:51347164 original size:22 final size:22
Alignment explanation
Indices: 51347136--51347181 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
51347126 ATTTACGAAG
51347136 TTAGTTGTGTAGTTAATTAGGT
1 TTAGTTGTGTAGTTAATTAGGT
51347158 TTAGTTGTGTAGTTAATTAGGT
1 TTAGTTGTGTAGTTAATTAGGT
51347180 TT
1 TT
51347182 TGGTTAGGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.52
Consensus pattern (22 bp):
TTAGTTGTGTAGTTAATTAGGT
Found at i:51348464 original size:40 final size:40
Alignment explanation
Indices: 51348342--51348475 Score: 121
Period size: 37 Copynumber: 3.4 Consensus size: 40
51348332 CTTCGACTCA
* *
51348342 ATGAGACACTGGGTGTCAATTTTATTACTTCGGATTTATTCG
1 ATGAGACACTGGGTGTCAA-TTTACTACTTC-GATTTATCCG
*** * * * * *
51348384 ATGAGGTGCTAGGTGCCAATTTACT--TTAG-TTTAACTG
1 ATGAGACACTGGGTGTCAATTTACTACTTCGATTTATCCG
*
51348421 ATGAGACACTGGGTGTCAATTTACTACTTCGAATTATCCG
1 ATGAGACACTGGGTGTCAATTTACTACTTCGATTTATCCG
*
51348461 ATGAGGCACTGGGTG
1 ATGAGACACTGGGTG
51348476 CCAAATTGGT
Statistics
Matches: 69, Mismatches: 20, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
37 25 0.36
38 1 0.01
39 5 0.07
40 19 0.28
41 5 0.07
42 14 0.20
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (40 bp):
ATGAGACACTGGGTGTCAATTTACTACTTCGATTTATCCG
Found at i:51350101 original size:2 final size:2
Alignment explanation
Indices: 51350094--51350137 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
51350084 TCGAACCCAT
51350094 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
51350136 CA
1 CA
51350138 TGACCCAACC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:51356757 original size:22 final size:21
Alignment explanation
Indices: 51356732--51356799 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 21
51356722 CATCAAAAAC
*
51356732 CCATTTCGTACCAAAACTTATA
1 CCATTTCGTACC-AAACTTAAA
* * *
51356754 CCATTTCATAACTAAACCTAAA
1 CCATTTCGT-ACCAAACTTAAA
51356776 CCATATTCG-ACCAAACTTAAA
1 CCAT-TTCGTACCAAACTTAAA
51356797 CCA
1 CCA
51356800 ACTCTTTCTA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
21 13 0.35
22 19 0.51
23 5 0.14
ACGTcount: A:0.41, C:0.29, G:0.03, T:0.26
Consensus pattern (21 bp):
CCATTTCGTACCAAACTTAAA
Found at i:51368974 original size:19 final size:21
Alignment explanation
Indices: 51368936--51368976 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
51368926 ATAATAGTTG
51368936 AAAAAATATATTACTAATATA
1 AAAAAATATATTACTAATATA
51368957 AAAAAATATATTA-T-ATATA
1 AAAAAATATATTACTAATATA
51368976 A
1 A
51368977 TATATATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 6 0.30
20 1 0.05
21 13 0.65
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (21 bp):
AAAAAATATATTACTAATATA
Found at i:51370559 original size:24 final size:26
Alignment explanation
Indices: 51370532--51370589 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
51370522 AGCTTCAAAT
*
51370532 TAAT-AATTTAAA-ATTTTGTTAACA
1 TAATAAATATAAAGATTTTGTTAACA
*
51370556 TAATAAATATAAAGATTTTTTTAACA
1 TAATAAATATAAAGATTTTGTTAACA
*
51370582 TAAAAAAT
1 TAATAAAT
51370590 TATATTATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 4 0.14
25 7 0.24
26 18 0.62
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.41
Consensus pattern (26 bp):
TAATAAATATAAAGATTTTGTTAACA
Found at i:51370976 original size:10 final size:9
Alignment explanation
Indices: 51370958--51370999 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
51370948 GTAAAAAATG
51370958 AAAAA-AAT
1 AAAAATAAT
51370966 AAAAATCAAT
1 AAAAAT-AAT
*
51370976 AAAAATTAT
1 AAAAATAAT
*
51370985 AAAAATTAT
1 AAAAATAAT
51370994 AAAAAT
1 AAAAAT
51371000 TATTAAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
8 5 0.16
9 17 0.55
10 9 0.29
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (9 bp):
AAAAATAAT
Found at i:51370986 original size:9 final size:9
Alignment explanation
Indices: 51370964--51371153 Score: 95
Period size: 9 Copynumber: 20.2 Consensus size: 9
51370954 AATGAAAAAA
*
51370964 ATAAAAATCA
1 ATAAAAAT-T
51370974 ATAAAAATT
1 ATAAAAATT
51370983 ATAAAAATT
1 ATAAAAATT
51370992 ATAAAAATT
1 ATAAAAATT
**
51371001 ATTAAATTTT
1 A-TAAAAATT
51371011 AATAAAAAATT
1 -AT-AAAAATT
51371022 -TAAAATATT
1 ATAAAA-ATT
51371031 -TAAAAATT
1 ATAAAAATT
51371039 ATTAAAAATT
1 A-TAAAAATT
51371049 AT-AAAATAT
1 ATAAAAAT-T
*
51371058 ATAGAAATAT
1 ATAAAAAT-T
*
51371068 AGAAAAAATT
1 A-TAAAAATT
51371078 AT-AAAATT
1 ATAAAAATT
* * *
51371086 TTATAAAGTC
1 ATA-AAAATT
* *
51371096 GTAAAAAAT
1 ATAAAAATT
*
51371105 ATAAAAAAT
1 ATAAAAATT
* *
51371114 GTAAAGAAAT
1 ATAAA-AATT
51371124 AT-AAAATT
1 ATAAAAATT
51371132 CATAAAAGAATT
1 -AT-AAA-AATT
51371144 AT-AAAATT
1 ATAAAAATT
51371152 AT
1 AT
51371154 CGTACCAAAA
Statistics
Matches: 144, Mismatches: 20, Indels: 34
0.73 0.10 0.17
Matches are distributed among these distances:
8 28 0.19
9 53 0.37
10 44 0.31
11 15 0.10
12 4 0.03
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (9 bp):
ATAAAAATT
Found at i:51370998 original size:28 final size:27
Alignment explanation
Indices: 51370964--51371153 Score: 97
Period size: 28 Copynumber: 6.7 Consensus size: 27
51370954 AATGAAAAAA
*
51370964 ATAAAAATCAATAAAAATTATAAAAATT
1 ATAAAAAT-ATTAAAAATTATAAAAATT
**
51370992 ATAAAAATTATTAAATTTTAATAAAAAATT
1 ATAAAAA-TATTAAAAATT-AT-AAAAATT
51371022 -T-AAAATATTTAAAAATTATTAAAAATT
1 ATAAAAATA-TTAAAAATTA-TAAAAATT
* *
51371049 AT-AAAATATATAGAAATATAGAAAAAATT
1 ATAAAAATAT-TAAAAAT-TA-TAAAAATT
* * ** *
51371078 AT-AAAATTTTATAAAGTCGTAAAAAAT
1 ATAAAAATATTA-AAAATTATAAAAATT
*
51371105 ATAAAAA-ATGTAAAGAAATAT-AAAATT
1 ATAAAAATAT-TAAA-AATTATAAAAATT
51371132 CATAAAAGA-ATTATAAAATTAT
1 -ATAAAA-ATATTA-AAAATTAT
51371154 CGTACCAAAA
Statistics
Matches: 125, Mismatches: 22, Indels: 30
0.71 0.12 0.17
Matches are distributed among these distances:
27 27 0.22
28 62 0.50
29 29 0.23
30 7 0.06
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (27 bp):
ATAAAAATATTAAAAATTATAAAAATT
Found at i:51371006 original size:10 final size:10
Alignment explanation
Indices: 51370965--51371054 Score: 75
Period size: 10 Copynumber: 9.5 Consensus size: 10
51370955 ATGAAAAAAA
* *
51370965 TAAAAATCAA
1 TAAAAATTAT
51370975 TAAAAATTA-
1 TAAAAATTAT
51370984 TAAAAATTA-
1 TAAAAATTAT
51370993 TAAAAATTAT
1 TAAAAATTAT
** *
51371003 TAAATTTTAA
1 TAAAAATTAT
51371013 TAAAAA--AT
1 TAAAAATTAT
*
51371021 TTAAAA-TATT
1 TAAAAATTA-T
51371031 TAAAAATTAT
1 TAAAAATTAT
51371041 TAAAAATTA-
1 TAAAAATTAT
51371050 TAAAA
1 TAAAA
51371055 TATATAGAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
8 6 0.09
9 24 0.36
10 35 0.52
11 2 0.03
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:51371026 original size:38 final size:37
Alignment explanation
Indices: 51370976--51371092 Score: 119
Period size: 39 Copynumber: 3.1 Consensus size: 37
51370966 AAAAATCAAT
51370976 AAAAATTATAAAAATTATAAAAATTATTAAATTTTAATA
1 AAAAATT-TAAAAATTATAAAAATTATTAAATTTT-ATA
**
51371015 AAAAATTTAAAATATT-TAAAAATTATTAAAAATTATA
1 AAAAATTTAAAA-ATTATAAAAATTATTAAATTTTATA
* * * * *
51371052 AAATATATAGAAATATAGAAAAAATTATAAAATTTTATA
1 AAAAATTTAAAAAT-TA-TAAAAATTATTAAATTTTATA
51371091 AA
1 AA
51371093 GTCGTAAAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
36 2 0.03
37 13 0.20
38 21 0.32
39 29 0.45
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (37 bp):
AAAAATTTAAAAATTATAAAAATTATTAAATTTTATA
Found at i:51371084 original size:19 final size:18
Alignment explanation
Indices: 51370976--51371084 Score: 80
Period size: 19 Copynumber: 5.8 Consensus size: 18
51370966 AAAAATCAAT
51370976 AAAAATTATAAAA-ATTA
1 AAAAATTATAAAATATTA
* *
51370993 TAAAAATTATTAAATTTTAATA
1 -AAAAATTA-TAAA--ATATTA
*
51371015 AAAAATT-TAAAATATTT
1 AAAAATTATAAAATATTA
51371032 AAAAATTATTAAAA-ATTA
1 AAAAATTA-TAAAATATTA
* *
51371050 TAAAATATATAGAAATATAGA
1 AAAAAT-TATA-AAATAT-TA
51371071 AAAAATTATAAAAT
1 AAAAATTATAAAAT
51371085 TTTATAAAGT
Statistics
Matches: 72, Mismatches: 9, Indels: 19
0.72 0.09 0.19
Matches are distributed among these distances:
17 10 0.14
18 18 0.25
19 22 0.31
20 6 0.08
21 13 0.18
22 3 0.04
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
AAAAATTATAAAATATTA
Found at i:51371464 original size:28 final size:29
Alignment explanation
Indices: 51371402--51371475 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 29
51371392 CATTTTTATC
* **
51371402 ATTTTTTCTAA-TTTTTAATAAAATTTTG
1 ATTTTTTATAATTTTTTAATAAAATTTAA
* *
51371430 ATATTTT-TAATTTTTTATTAAAATTTAA
1 ATTTTTTATAATTTTTTAATAAAATTTAA
51371458 ATTTTTTTATAATTTTTT
1 A-TTTTTTATAATTTTTT
51371476 TACCATGTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
27 3 0.08
28 21 0.55
29 5 0.13
30 9 0.24
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (29 bp):
ATTTTTTATAATTTTTTAATAAAATTTAA
Found at i:51377296 original size:146 final size:146
Alignment explanation
Indices: 51377025--51378189 Score: 1401
Period size: 146 Copynumber: 8.0 Consensus size: 146
51377015 GAAAGGGATG
* * * * * * *
51377025 TAATATGGCCATTTTCGCTAGGGCGAATATGGTCTTTTTACCCTCGAC-CGTCTGTCACCCAGTC
1 TAATGTGGCCCTTTTTGCTAGGGCGATTATGATCTTTTTACTCTCGACTC-TCTGTCGCCCAGTC
* * * * * *
51377089 TCTCTCTCAGTCATTACGTGATCAGTGACATTATAATTATCAATTCTTCAAAATTATTTTTTTAA
65 TCTCTCTCAGTCGTTACGTGATCAGTGACACTATAACTGTCAATTCTCCAAAATTAATTTTTTAA
*
51377154 TAAATAAAAAGAAACTT
130 TAAATAAAAAGAAACTC
* *
51377171 TAATGTGGCCCTTTTTGCTAAGGCGATTATGATCTTTTTACTCTCAACTCTCTGTCGCCCAGTCT
1 TAATGTGGCCCTTTTTGCTAGGGCGATTATGATCTTTTTACTCTCGACTCTCTGTCGCCCAGTCT
* * *
51377236 CTCTCTCAGTCGTTAAGTGATCAGTAACACTATAACGGTCAATTCTCCAAAATTAATTTTTTAAT
66 CTCTCTCAGTCGTTACGTGATCAGTGACACTATAACTGTCAATTCTCCAAAATTAATTTTTTAAT
51377301 AAATAAAAAGAAACTC
131 AAATAAAAAGAAACTC
* * * * * * *
51377317 TAATGTGGCCTTTTTTGCTAGGGTGATTATGGTCTTTCTACTCTCGACTCCCTATCGCCAAGTCT
1 TAATGTGGCCCTTTTTGCTAGGGCGATTATGATCTTTTTACTCTCGACTCTCTGTCGCCCAG--T
* * *
51377382 CTCTCTTTCTCAGTCGTTACGTGATCAGTGACACTATAATTGTCGATTCT-C-TAATT--TTTTT
64 CTCTC--TCTCAGTCGTTACGTGATCAGTGACACTATAACTGTCAATTCTCCAAAATTAATTTTT
* *
51377443 TAATAAATAAAAAGAAATTT
127 TAATAAATAAAAAGAAACTC
* * *
51377463 TAATGTGGCCCTTTTTGCTAAGGCGATTATGATCTTTTTACTCTCGACTCTCTGTCGTCTAGTCT
1 TAATGTGGCCCTTTTTGCTAGGGCGATTATGATCTTTTTACTCTCGACTCTCTGTCGCCCAGTCT
* * * **
51377528 CTCTCTCAGTCGTTACATGATCAGTGACACTATAACCGTCAGTTCTCCAAAATTAATTTTTTACC
66 CTCTCTCAGTCGTTACGTGATCAGTGACACTATAACTGTCAATTCTCCAAAATTAATTTTTTAAT
51377593 AAATAAAAAGAAACTC
131 AAATAAAAAGAAACTC
* * * * *
51377609 TAATGTGGCCCTTTTTGCTAGGACGATTATGGTC--TTTACTCTCGACTGTCCGCCGCCCAGTCT
1 TAATGTGGCCCTTTTTGCTAGGGCGATTATGATCTTTTTACTCTCGACTCTCTGTCGCCCAGTCT
* * * * * * * *
51377672 CTCTCTCAATCGTTGCGTGATAAGTGACATTATAATTGTCAATTCTCCATAATTAATATTTTAAA
66 CTCTCTCAGTCGTTACGTGATCAGTGACACTATAACTGTCAATTCTCCAAAATTAATTTTTTAAT
*
51377737 AAATAAAAAGTAACTC
131 AAATAAAAAGAAACTC
* * * * * *
51377753 TAATGTGGCCCTTTTTGATAGGGCGATTATGATATTTTTACTCTCGACTATCTG-CGGTCTAGTG
1 TAATGTGGCCCTTTTTGCTAGGGCGATTATGATCTTTTTACTCTCGACTCTCTGTC-GCCCAGTC
* * * *
51377817 TCTCTCTCAATCATTATGTGATCAATGACACTATAACTGTCAATTCTCCAAAATTAATTTTTTAA
65 TCTCTCTCAGTCGTTACGTGATCAGTGACACTATAACTGTCAATTCTCCAAAATTAATTTTTTAA
* *
51377882 TAAAGAAAAAGAAAATC
130 TAAATAAAAAGAAACTC
* * * *
51377899 TAATGTGGCCCTTTTTGCTAGGGCGATTATGATCTTTTTACTCTAGGCTATCTGTCGCCTAGTCT
1 TAATGTGGCCCTTTTTGCTAGGGCGATTATGATCTTTTTACTCTCGACTCTCTGTCGCCCAGTCT
* *
51377964 CTCTCTCAATCGTTACGTGATCAGTGACACTATATCTGTCAATTCTCCAAAATTAATTTTTTAAT
66 CTCTCTCAGTCGTTACGTGATCAGTGACACTATAACTGTCAATTCTCCAAAATTAATTTTTTAAT
*
51378029 AAATAAAAAGAAACAC
131 AAATAAAAAGAAACTC
* * ** * * * * * * * *
51378045 TAATTTGGTCCTTTTTATTAGGGTGATTATGGTATTTTTACTCTCAACTATCTATGGTCCAGTCT
1 TAATGTGGCCCTTTTTGCTAGGGCGATTATGATCTTTTTACTCTCGACTCTCTGTCGCCCAGTCT
* * * * **
51378110 CTCTCTCAGTTGTTACGTGATCAGTGACATTATAACCGTCAGTTCTCCAAAATTAATTTTTTACC
66 CTCTCTCAGTCGTTACGTGATCAGTGACACTATAACTGTCAATTCTCCAAAATTAATTTTTTAAT
*
51378175 AAATAAAAGGAAACT
131 AAATAAAAAGAAACT
51378190 TTACTTAAAA
Statistics
Matches: 871, Mismatches: 135, Indels: 26
0.84 0.13 0.03
Matches are distributed among these distances:
142 38 0.04
143 1 0.00
144 132 0.15
145 1 0.00
146 648 0.74
147 2 0.00
148 10 0.01
149 1 0.00
150 38 0.04
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.37
Consensus pattern (146 bp):
TAATGTGGCCCTTTTTGCTAGGGCGATTATGATCTTTTTACTCTCGACTCTCTGTCGCCCAGTCT
CTCTCTCAGTCGTTACGTGATCAGTGACACTATAACTGTCAATTCTCCAAAATTAATTTTTTAAT
AAATAAAAAGAAACTC
Found at i:51378026 original size:582 final size:581
Alignment explanation
Indices: 51377025--51378189 Score: 1575
Period size: 582 Copynumber: 2.0 Consensus size: 581
51377015 GAAAGGGATG
* * *
51377025 TAATATGGCCATTTTCGCTAGGGCGAATATGGTCTTTTTACCCTCGACCGTCTGTCACCCAGTCT
1 TAATATGGCCATTTTCGCTAGGACGAATATGGTC-TTTTACCCTCGACCGTCCGCCACCCAGTCT
* * * * * *
51377090 CTCTCTCAGTCATTACGTGATCAGTGACATTATAATTATCAATTCTTCAAAATTATTTTTTTAAT
65 CTCTCTCAATCATTACGTGATAAGTGACATTATAATTATCAATTCTCCAAAATTAATATTTTAAA
* * *
51377155 AAATAAAAAGAAACTTTAATGTGGCCCTTTTTGCTAAGGCGATTATGATCTTTTTACTCTCAACT
130 AAATAAAAAGAAACTCTAATGTGGCCCTTTTTGATAAGGCGATTATGATATTTTTACTCTCAACT
* * * *
51377220 CTCTGTCGCCCAGTCTCTCTCTCAGTCGTTAAGTGATCAGTAACACTATAACGGTCAATTCTCCA
195 ATCTGTCGCCCAGTCTCTCTCTCAATCATTAAGTGATCAATAACACTATAACGGTCAATTCTCCA
* * * * *
51377285 AAATTAATTTTTTAATAAATAAAAAGAAACTCTAATGTGGCCTTTTTTGCTAGGGTGATTATGGT
260 AAATTAATTTTTTAATAAAGAAAAAGAAAATCTAATGTGGCCCTTTTTGCTAGGGCGATTATGAT
* * *
51377350 CTTTCTACTCTCGACTCCCTATCGCCAAGTCTCTCTCTTTCTCAGTCGTTACGTGATCAGTGACA
325 CTTTCTACTCTAGACTACCTATCGCCAAG-CTCTCTC-TTCTCAATCGTTACGTGATCAGTGACA
* * *** *
51377415 CTATAATTGTCGATTCTCTAATTTTTTTTAATAAATAAAAAGAAATTTTAATGTGGCCCTTTTTG
388 CTATAATTGTCAATTCTCAAATTTTTTTTAATAAATAAAAAGAAACACTAATGTGGCCCTTTTTA
* * * * *
51377480 CTAAGGCGATTATGATCTTTTTACTCTCGACTCTCTGTCGTCTAGTCTCTCTCTCAGTCGTTACA
453 CTAAGGCGATTATGATATTTTTACTCTCAACTATCTATCGTCCAGTCTCTCTCTCAGTCGTTACA
51377545 TGATCAGTGACACTATAACCGTCAGTTCTCCAAAATTAATTTTTTACCAAATAAAAAGAAACTC
518 TGATCAGTGACACTATAACCGTCAGTTCTCCAAAATTAATTTTTTACCAAATAAAAAGAAACTC
* * * * * * *
51377609 TAATGTGGCCCTTTTTGCTAGGACGATTATGGTC-TTTACTCTCGACTGTCCGCCGCCCAGTCTC
1 TAATATGGCCATTTTCGCTAGGACGAATATGGTCTTTTACCCTCGACCGTCCGCCACCCAGTCTC
* * * *
51377673 TCTCTCAATCGTTGCGTGATAAGTGACATTATAATTGTCAATTCTCCATAATTAATATTTTAAAA
66 TCTCTCAATCATTACGTGATAAGTGACATTATAATTATCAATTCTCCAAAATTAATATTTTAAAA
* * *
51377738 AATAAAAAGTAACTCTAATGTGGCCCTTTTTGATAGGGCGATTATGATATTTTTACTCTCGACTA
131 AATAAAAAGAAACTCTAATGTGGCCCTTTTTGATAAGGCGATTATGATATTTTTACTCTCAACTA
* * * * * *
51377803 TCTG-CGGTCTAGTGTCTCTCTCAATCATTATGTGATCAATGACACTATAACTGTCAATTCTCCA
196 TCTGTC-GCCCAGTCTCTCTCTCAATCATTAAGTGATCAATAACACTATAACGGTCAATTCTCCA
51377867 AAATTAATTTTTTAATAAAGAAAAAGAAAATCTAATGTGGCCCTTTTTGCTAGGGCGATTATGAT
260 AAATTAATTTTTTAATAAAGAAAAAGAAAATCTAATGTGGCCCTTTTTGCTAGGGCGATTATGAT
* * * * *
51377932 CTTTTTACTCTAGGCTATCTGTCGCCTAG-TCTCTC-TCTCAATCGTTACGTGATCAGTGACACT
325 CTTTCTACTCTAGACTACCTATCGCCAAGCTCTCTCTTCTCAATCGTTACGTGATCAGTGACACT
* *
51377995 AT-ATCTGTCAATTCTCCAAAATTAATTTTTTAATAAATAAAAAGAAACACTAATTTGGTCCTTT
390 ATAAT-TGTCAATTCT-C-AAATT--TTTTTTAATAAATAAAAAGAAACACTAATGTGGCCCTTT
* * * * * *
51378059 TTATTAGGGTGATTATGGTATTTTTACTCTCAACTATCTATGGTCCAGTCTCTCTCTCAGTTGTT
450 TTACTAAGGCGATTATGATATTTTTACTCTCAACTATCTATCGTCCAGTCTCTCTCTCAGTCGTT
* * *
51378124 ACGTGATCAGTGACATTATAACCGTCAGTTCTCCAAAATTAATTTTTTACCAAATAAAAGGAAAC
515 ACATGATCAGTGACACTATAACCGTCAGTTCTCCAAAATTAATTTTTTACCAAATAAAAAGAAAC
51378189 T
580 T
51378190 TTACTTAAAA
Statistics
Matches: 504, Mismatches: 71, Indels: 14
0.86 0.12 0.02
Matches are distributed among these distances:
577 2 0.00
578 38 0.08
579 1 0.00
580 10 0.02
581 1 0.00
582 423 0.84
584 29 0.06
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.37
Consensus pattern (581 bp):
TAATATGGCCATTTTCGCTAGGACGAATATGGTCTTTTACCCTCGACCGTCCGCCACCCAGTCTC
TCTCTCAATCATTACGTGATAAGTGACATTATAATTATCAATTCTCCAAAATTAATATTTTAAAA
AATAAAAAGAAACTCTAATGTGGCCCTTTTTGATAAGGCGATTATGATATTTTTACTCTCAACTA
TCTGTCGCCCAGTCTCTCTCTCAATCATTAAGTGATCAATAACACTATAACGGTCAATTCTCCAA
AATTAATTTTTTAATAAAGAAAAAGAAAATCTAATGTGGCCCTTTTTGCTAGGGCGATTATGATC
TTTCTACTCTAGACTACCTATCGCCAAGCTCTCTCTTCTCAATCGTTACGTGATCAGTGACACTA
TAATTGTCAATTCTCAAATTTTTTTTAATAAATAAAAAGAAACACTAATGTGGCCCTTTTTACTA
AGGCGATTATGATATTTTTACTCTCAACTATCTATCGTCCAGTCTCTCTCTCAGTCGTTACATGA
TCAGTGACACTATAACCGTCAGTTCTCCAAAATTAATTTTTTACCAAATAAAAAGAAACTC
Found at i:51378981 original size:19 final size:19
Alignment explanation
Indices: 51378953--51378989 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
51378943 TTTTGGAGAA
51378953 TAAAAGTTT-GAGGGAAAG
1 TAAAAGTTTGGAGGGAAAG
51378971 TAAATAGTTTGGAGGGAAA
1 TAAA-AGTTTGGAGGGAAA
51378990 ATATTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.24
Consensus pattern (19 bp):
TAAAAGTTTGGAGGGAAAG
Found at i:51379388 original size:9 final size:9
Alignment explanation
Indices: 51379371--51379401 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
51379361 TCGAGTTGAT
51379371 TCGAATAAC
1 TCGAATAAC
*
51379380 TCGATTAAC
1 TCGAATAAC
51379389 TCGAATAAC
1 TCGAATAAC
51379398 TCGA
1 TCGA
51379402 TTCGTTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:51387771 original size:78 final size:78
Alignment explanation
Indices: 51387657--51387817 Score: 322
Period size: 78 Copynumber: 2.1 Consensus size: 78
51387647 AATCCTTTTT
51387657 ATTCAACTTTATGAATTTCATTCTTGAGAAATTAGTCCCTTTACTTTAATTTATTAAAATTTATT
1 ATTCAACTTTATGAATTTCATTCTTGAGAAATTAGTCCCTTTACTTTAATTTATTAAAATTTATT
51387722 GAAAGTTAATCCA
66 GAAAGTTAATCCA
51387735 ATTCAACTTTATGAATTTCATTCTTGAGAAATTAGTCCCTTTACTTTAATTTATTAAAATTTATT
1 ATTCAACTTTATGAATTTCATTCTTGAGAAATTAGTCCCTTTACTTTAATTTATTAAAATTTATT
51387800 GAAAGTTAATCCA
66 GAAAGTTAATCCA
51387813 ATTCA
1 ATTCA
51387818 TAAACTTTAA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 83 1.00
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (78 bp):
ATTCAACTTTATGAATTTCATTCTTGAGAAATTAGTCCCTTTACTTTAATTTATTAAAATTTATT
GAAAGTTAATCCA
Found at i:51388598 original size:19 final size:19
Alignment explanation
Indices: 51388545--51388601 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 19
51388535 AAACCCTTTT
51388545 AAAATTA-AAAATTACTAAA
1 AAAATTATAAAATTA-TAAA
*
51388564 AAAATCATAAATATTATAAA
1 AAAATTATAAA-ATTATAAA
51388584 AAAATTATAAAATTATAA
1 AAAATTATAAAATTATAA
51388602 GATTTTTATG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.38
20 17 0.50
21 4 0.12
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAATTATAAAATTATAAA
Found at i:51409205 original size:44 final size:44
Alignment explanation
Indices: 51409157--51409532 Score: 222
Period size: 44 Copynumber: 8.7 Consensus size: 44
51409147 TCGACTTCAA
* * *
51409157 TCTGCTCCACTGCAACCTCAGGGGGATAAGATTTGTTTTCTTAG
1 TCTGCTCCACTGCAACTTCAGGGGGATAAGACTTGTTTTCTCAG
* **
51409201 TCTGCCCCACTGTGACTTCAGGGGGATAAGACTTGTTTTCTCAG
1 TCTGCTCCACTGCAACTTCAGGGGGATAAGACTTGTTTTCTCAG
* ** * * *
51409245 TCTGCTCCACTGCAACTTCAGGGAGATAAGACCCG-ATGC-GA-
1 TCTGCTCCACTGCAACTTCAGGGGGATAAGACTTGTTTTCTCAG
* * * * * *
51409286 TCTGCTCTACTACTACTT-AGGGAGATAAGATCTAT-TGTTT-TAAT
1 TCTGCTCCACTGCAACTTCAGGGGGATAAGA-CT-TGT-TTTCTCAG
* * * *
51409330 TC-GCTCCACTGCAACTTCAGGGAGATAGGA-TTGATTTCTTCTG
1 TCTGCTCCACTGCAACTTCAGGGGGATAAGACTTGTTTTC-TCAG
* ** * ** * *
51409373 TCTGCTCCACTACTGCTT-AGGGAGATAAGACTT-AATGC-GA-
1 TCTGCTCCACTGCAACTTCAGGGGGATAAGACTTGTTTTCTCAG
* ** * *
51409413 TCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGTGTTTT-TCGG
1 TCTGCTCCACTGCAACTTCAGGGGGATAAGA-CT-TGTTTTCTCAG
* * * * *
51409457 TCTGCCCCACTGCAACTTCAAGGGGATAAGACCTGCTTACTCAG
1 TCTGCTCCACTGCAACTTCAGGGGGATAAGACTTGTTTTCTCAG
* *
51409501 TCTGCTCCGCTGCAACTTCAGGGAGATAAGAC
1 TCTGCTCCACTGCAACTTCAGGGGGATAAGAC
51409533 CTGATACGAT
Statistics
Matches: 255, Mismatches: 58, Indels: 38
0.73 0.17 0.11
Matches are distributed among these distances:
40 42 0.16
41 22 0.09
42 3 0.01
43 38 0.15
44 140 0.55
45 10 0.04
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGGGATAAGACTTGTTTTCTCAG
Found at i:51409942 original size:132 final size:132
Alignment explanation
Indices: 51409705--51410130 Score: 690
Period size: 132 Copynumber: 3.2 Consensus size: 132
51409695 ACAAGATCTG
* *
51409705 CCACTACTGACCAGGGACATAGGACTTGTGGCTTAAATCTGCTTCCTTACTTCTGGGGAAGATAA
1 CCACTACTGGCCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACTTCTGGGGAAGATAA
*
51409770 GATTCGCCATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAAACCTA
66 GATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAAACCTA
51409835 TT
131 TT
* *
51409837 CCACTACTGGCCAGGGATATAGGACTTGTGGCTTAAATTTGCTTCCTTACTTCTAGGGAAGATAA
1 CCACTACTGGCCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACTTCTGGGGAAGATAA
*
51409902 GATTCGCCGTCTTCGATCTGCTTCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAAACCTA
66 GATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAAACCTA
51409967 TT
131 TT
* * * * *
51409969 CCATTGCTGGCCAGGGATATAGAACTTGTGGCTTAAATCTGCTTCCTTAATTTTGGGGAAGATAA
1 CCACTACTGGCCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACTTCTGGGGAAGATAA
***
51410034 GATTTTTCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAAACCTA
66 GATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAAACCTA
51410099 TT
131 TT
* * * *
51410101 CCAGTGCCGGTCAGGGATATAGGACTTGTG
1 CCACTACTGGCCAGGGATATAGGACTTGTG
51410131 ATTTCACTGA
Statistics
Matches: 273, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 273 1.00
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (132 bp):
CCACTACTGGCCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACTTCTGGGGAAGATAA
GATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAAACCTA
TT
Found at i:51414400 original size:642 final size:642
Alignment explanation
Indices: 51413177--51414462 Score: 2572
Period size: 642 Copynumber: 2.0 Consensus size: 642
51413167 CAATCTCGGT
51413177 ATGGCTCAACTGATTGTACCATTTCGACACTGCTCCAATAAGGCTATCCTGAAAACAATGTATTA
1 ATGGCTCAACTGATTGTACCATTTCGACACTGCTCCAATAAGGCTATCCTGAAAACAATGTATTA
51413242 ATAGCTGATCATTGTTAATATACCCAGTCATTCTCCTACAGAACATGGTGATATGGGCTTCACGG
66 ATAGCTGATCATTGTTAATATACCCAGTCATTCTCCTACAGAACATGGTGATATGGGCTTCACGG
51413307 CAGCTAGTCCCACTATATTTCTCAAATTCAGGCATCTTGAACTTGTGAGGGAGTACTAAGTCTGG
131 CAGCTAGTCCCACTATATTTCTCAAATTCAGGCATCTTGAACTTGTGAGGGAGTACTAAGTCTGG
51413372 AACCAAGCTCAGATCTTTTGCATCAATTCCATGGTGACTATCGGCGCTTTCCAAGGCTTTGAATT
196 AACCAAGCTCAGATCTTTTGCATCAATTCCATGGTGACTATCGGCGCTTTCCAAGGCTTTGAATT
51413437 TTTCCTCCAACCATTTACACCTATCTTCCCACTATTTTGGCAATTCCGCGTTCGCCTTTCCTTCT
261 TTTCCTCCAACCATTTACACCTATCTTCCCACTATTTTGGCAATTCCGCGTTCGCCTTTCCTTCT
51413502 TCAGCTATTTCATCAAAATCCAGGACGGCAAGATTAACCGCATTATCACCAGGGTTAGGGCCTGA
326 TCAGCTATTTCATCAAAATCCAGGACGGCAAGATTAACCGCATTATCACCAGGGTTAGGGCCTGA
51413567 TCCGGCCAGGAAGTTCATCGGTATTGAAACATCGGTTTGAAACCTCTGAGGCCCAATTGAAATAG
391 TCCGGCCAGGAAGTTCATCGGTATTGAAACATCGGTTTGAAACCTCTGAGGCCCAATTGAAATAG
51413632 AGGATCTGCGCGGAGGTACCTCGGTCTGAGTCTGTGCATGTAGAGGTGTAAACCTAGAGGATAGA
456 AGGATCTGCGCGGAGGTACCTCGGTCTGAGTCTGTGCATGTAGAGGTGTAAACCTAGAGGATAGA
51413697 TGGGTCTATCCTTGTCTTCTTCTTCATCATTCACCATAGGACCTTTCCCCGTATTTACACCTTTA
521 TGGGTCTATCCTTGTCTTCTTCTTCATCATTCACCATAGGACCTTTCCCCGTATTTACACCTTTA
51413762 GTTAGTAGATGGGTCAATTCAGCCATCGCATCTTTTTGAGCCTTGATCAATTTTTCC
586 GTTAGTAGATGGGTCAATTCAGCCATCGCATCTTTTTGAGCCTTGATCAATTTTTCC
51413819 ATGGCTCAACTGATTGTACCATTTCGACACTGCTCCAATAAGGCTATCCTGAAAACAATGTATTA
1 ATGGCTCAACTGATTGTACCATTTCGACACTGCTCCAATAAGGCTATCCTGAAAACAATGTATTA
51413884 ATAGCTGATCATTGTTAATATACCCAGTCATTCTCCTACAGAACATGGTGATATGGGCTTCACGG
66 ATAGCTGATCATTGTTAATATACCCAGTCATTCTCCTACAGAACATGGTGATATGGGCTTCACGG
51413949 CAGCTAGTCCCACTATATTTCTCAAATTCAGGCATCTTGAACTTGTGAGGGAGTACTAAGTCTGG
131 CAGCTAGTCCCACTATATTTCTCAAATTCAGGCATCTTGAACTTGTGAGGGAGTACTAAGTCTGG
51414014 AACCAAGCTCAGATCTTTTGCATCAATTCCATGGTGACTATCGGCGCTTTCCAAGGCTTTGAATT
196 AACCAAGCTCAGATCTTTTGCATCAATTCCATGGTGACTATCGGCGCTTTCCAAGGCTTTGAATT
51414079 TTTCCTCCAACCATTTACACCTATCTTCCCACTATTTTGGCAATTCCGCGTTCGCCTTTCCTTCT
261 TTTCCTCCAACCATTTACACCTATCTTCCCACTATTTTGGCAATTCCGCGTTCGCCTTTCCTTCT
51414144 TCAGCTATTTCATCAAAATCCAGGACGGCAAGATTAACCGCATTATCACCAGGGTTAGGGCCTGA
326 TCAGCTATTTCATCAAAATCCAGGACGGCAAGATTAACCGCATTATCACCAGGGTTAGGGCCTGA
51414209 TCCGGCCAGGAAGTTCATCGGTATTGAAACATCGGTTTGAAACCTCTGAGGCCCAATTGAAATAG
391 TCCGGCCAGGAAGTTCATCGGTATTGAAACATCGGTTTGAAACCTCTGAGGCCCAATTGAAATAG
51414274 AGGATCTGCGCGGAGGTACCTCGGTCTGAGTCTGTGCATGTAGAGGTGTAAACCTAGAGGATAGA
456 AGGATCTGCGCGGAGGTACCTCGGTCTGAGTCTGTGCATGTAGAGGTGTAAACCTAGAGGATAGA
51414339 TGGGTCTATCCTTGTCTTCTTCTTCATCATTCACCATAGGACCTTTCCCCGTATTTACACCTTTA
521 TGGGTCTATCCTTGTCTTCTTCTTCATCATTCACCATAGGACCTTTCCCCGTATTTACACCTTTA
51414404 GTTAGTAGATGGGTCAATTCAGCCATCGCATCTTTTTGAGCCTTGATCAATTTTTCC
586 GTTAGTAGATGGGTCAATTCAGCCATCGCATCTTTTTGAGCCTTGATCAATTTTTCC
51414461 AT
1 AT
51414463 CATGTCTTCT
Statistics
Matches: 644, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
642 644 1.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.31
Consensus pattern (642 bp):
ATGGCTCAACTGATTGTACCATTTCGACACTGCTCCAATAAGGCTATCCTGAAAACAATGTATTA
ATAGCTGATCATTGTTAATATACCCAGTCATTCTCCTACAGAACATGGTGATATGGGCTTCACGG
CAGCTAGTCCCACTATATTTCTCAAATTCAGGCATCTTGAACTTGTGAGGGAGTACTAAGTCTGG
AACCAAGCTCAGATCTTTTGCATCAATTCCATGGTGACTATCGGCGCTTTCCAAGGCTTTGAATT
TTTCCTCCAACCATTTACACCTATCTTCCCACTATTTTGGCAATTCCGCGTTCGCCTTTCCTTCT
TCAGCTATTTCATCAAAATCCAGGACGGCAAGATTAACCGCATTATCACCAGGGTTAGGGCCTGA
TCCGGCCAGGAAGTTCATCGGTATTGAAACATCGGTTTGAAACCTCTGAGGCCCAATTGAAATAG
AGGATCTGCGCGGAGGTACCTCGGTCTGAGTCTGTGCATGTAGAGGTGTAAACCTAGAGGATAGA
TGGGTCTATCCTTGTCTTCTTCTTCATCATTCACCATAGGACCTTTCCCCGTATTTACACCTTTA
GTTAGTAGATGGGTCAATTCAGCCATCGCATCTTTTTGAGCCTTGATCAATTTTTCC
Found at i:51426233 original size:3 final size:3
Alignment explanation
Indices: 51426164--51426224 Score: 104
Period size: 3 Copynumber: 20.3 Consensus size: 3
51426154 GTTTTCGTAC
*
51426164 TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
51426212 TAT TAT CAT TAT T
1 TAT TAT TAT TAT T
51426225 GCTATTATTC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:51432976 original size:43 final size:43
Alignment explanation
Indices: 51432841--51433311 Score: 196
Period size: 44 Copynumber: 10.7 Consensus size: 43
51432831 GTGAAGATCG
* *
51432841 AAGAAACCAGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTA
1 AAGATACCAGTCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTA
* * * * * * **
51432884 AAGATAGCAGATCTTGCCTTCCT-GCGCTGACAATGAAGCAGATCG
1 AAGATACCAG-TCTTGCCTCCCTCG-GTTG-CAGTGGAGCAGGTTA
*
51432929 AAGATACCAGTCTTGGCTCCCTCGGTTGCAGTGGAGCAGGTTA
1 AAGATACCAGTCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTA
* * * * * * * * **
51432972 AAGATAACAGATATTGCCT-TCTTGCGATGACAGCGAAGCAGATCG
1 AAGATACCAG-TCTTGCCTCCCTCG-GTTG-CAGTGGAGCAGGTTA
* *
51433017 AAGATACCAGCCTTCCCTCCCTCGGTTGCAGTGGAGCAGGTTA
1 AAGATACCAGTCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTA
* * * * * * * **
51433060 AAGATAGCAAATCTTGCCTTCCTCCGCTGACAGTGAAGCAGATCG
1 AAGATA-CCAGTCTTGCCTCCCTCGGTTG-CAGTGGAGCAGGTTA
* * * * * ** *
51433105 AAGAAACAAAGCCATGCCTCCCTCGATTTTAGTGAAGCAGG-TA
1 AAGATAC-CAGTCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTA
* * * * ** * * * **
51433148 AAGATAGCAGATCTTGCCTTCTTAC-GCTGACAACGAACCAGATCG
1 AAGATACCAG-TCTTGCCTCCCT-CGGTTG-CAGTGGAGCAGGTTA
* * *
51433193 AAGACACCAGCCTTGCCTCCCTCGGTTGCAGTAGAGCAGGTTA
1 AAGATACCAGTCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTA
* * * * * * **
51433236 AAGATAGCAGATCTTGCCTTCCT-GCGCTGACAGCGAAGCAGATCG
1 AAGATACCAG-TCTTGCCTCCCTCG-GTTG-CAGTGGAGCAGGTTA
* *
51433281 AAGATACCAGCCTTGCCTCTCTCGGTTGCAG
1 AAGATACCAGTCTTGCCTCCCTCGGTTGCAG
51433312 CGGAATAGGT
Statistics
Matches: 295, Mismatches: 113, Indels: 40
0.66 0.25 0.09
Matches are distributed among these distances:
42 2 0.01
43 81 0.27
44 114 0.39
45 98 0.33
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (43 bp):
AAGATACCAGTCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTA
Found at i:51433322 original size:88 final size:88
Alignment explanation
Indices: 51432835--51433311 Score: 695
Period size: 88 Copynumber: 5.4 Consensus size: 88
51432825 AGATTAGTGA
*
51432835 AGATCGAAGAAACCAGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTG
1 AGATCGAAGATACCAGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTG
**
51432900 CCTTCCTGCGCTGACAATGAAGC
66 CCTTCCTGCGCTGACAGCGAAGC
* * * *
51432923 AGATCGAAGATACCAGTCTTGGCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAACAGATATTG
1 AGATCGAAGATACCAGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTG
* *
51432988 CCTTCTTGCGATGACAGCGAAGC
66 CCTTCCTGCGCTGACAGCGAAGC
* *
51433011 AGATCGAAGATACCAGCCTTCCCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAAATCTTG
1 AGATCGAAGATACCAGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTG
* *
51433076 CCTTCCTCCGCTGACAGTGAAGC
66 CCTTCCTGCGCTGACAGCGAAGC
* * * * ** *
51433099 AGATCGAAGAAACAAAGCCATGCCTCCCTCGATTTTAGTGAAGCAGG-TAAAGATAGCAGATCTT
1 AGATCGAAGATAC-CAGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTT
* * * *
51433163 GCCTTCTTACGCTGACAACGAACC
65 GCCTTCCTGCGCTGACAGCGAAGC
* *
51433187 AGATCGAAGACACCAGCCTTGCCTCCCTCGGTTGCAGTAGAGCAGGTTAAAGATAGCAGATCTTG
1 AGATCGAAGATACCAGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTG
51433252 CCTTCCTGCGCTGACAGCGAAGC
66 CCTTCCTGCGCTGACAGCGAAGC
*
51433275 AGATCGAAGATACCAGCCTTGCCTCTCTCGGTTGCAG
1 AGATCGAAGATACCAGCCTTGCCTCCCTCGGTTGCAG
51433312 CGGAATAGGT
Statistics
Matches: 340, Mismatches: 47, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
87 26 0.08
88 288 0.85
89 26 0.08
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (88 bp):
AGATCGAAGATACCAGCCTTGCCTCCCTCGGTTGCAGTGGAGCAGGTTAAAGATAGCAGATCTTG
CCTTCCTGCGCTGACAGCGAAGC
Found at i:51433458 original size:130 final size:129
Alignment explanation
Indices: 51433308--51433690 Score: 592
Period size: 130 Copynumber: 3.0 Consensus size: 129
51433298 TCTCTCGGTT
*
51433308 GCAGCGGAATAGGTTGGGAAATTACAAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAG
1 GCAGTGGAATAGGTT-GGAAATTACAAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAG
*
51433373 ATGGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCCCTGGTCA
65 ATGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCCCTGGTCA
*
51433438 GCAGTGGAATAGGTTAGGAAATTACAAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAG
1 GCAGTGGAATAGGTT-GGAAATTACAAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAG
* * *
51433503 ACGGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATGTCCCTGGTTA
65 ATGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCCCTGGTCA
* *
51433568 GCAGTGGAATATGTTGGAAATTAC-AGATCTTGTCTCCCTAAGTAGTAGCGGAGCAGATCGAAA-
1 GCAGTGGAATAGGTTGGAAATTACAAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATC-AAAG
* * * * *
51433631 ATGGCGAATCTTATCTTCAACTGTAAGGAATCAGATTGAAGCCGATAA-TCCTATCTCCCT
65 ATGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCC-ACAAGTCCTATGTCCCT
51433691 AAAGTTGTAG
Statistics
Matches: 234, Mismatches: 17, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
128 83 0.35
129 14 0.06
130 137 0.59
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (129 bp):
GCAGTGGAATAGGTTGGAAATTACAAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGA
TGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCCCTGGTCA
Found at i:51437756 original size:31 final size:30
Alignment explanation
Indices: 51437718--51437822 Score: 88
Period size: 31 Copynumber: 3.4 Consensus size: 30
51437708 TAATGACATT
51437718 AATATTAAATTAATAAAATATTATCAAGATA
1 AATATTAAATTAATAAAATATTATC-AGATA
** * * *
51437749 AATATTAAATTTAATTTAATA-TCTCATATT
1 AATATTAAA-TTAATAAAATATTATCAGATA
*
51437779 AATATTAAATTAATAAAA-ATCTAACTAGATA
1 AATATTAAATTAATAAAATAT-TATC-AGATA
* *
51437810 AACATTAATTTAA
1 AATATTAAATTAA
51437823 ATTTATTAAA
Statistics
Matches: 57, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
28 1 0.02
29 7 0.12
30 14 0.25
31 26 0.46
32 9 0.16
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (30 bp):
AATATTAAATTAATAAAATATTATCAGATA
Found at i:51441104 original size:26 final size:26
Alignment explanation
Indices: 51441067--51441126 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
51441057 CAATCAAAGC
* *
51441067 ATGTACAGTAACATCGAAAAGAGAAA
1 ATGTACAATAACATCAAAAAGAGAAA
51441093 ATGTACAATAACATCAAAAAGAGAAA
1 ATGTACAATAACATCAAAAAGAGAAA
51441119 ATGTACAA
1 ATGTACAA
51441127 GCTATGATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.57, C:0.12, G:0.15, T:0.17
Consensus pattern (26 bp):
ATGTACAATAACATCAAAAAGAGAAA
Found at i:51444880 original size:13 final size:13
Alignment explanation
Indices: 51444862--51444886 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51444852 ATCTATAATT
51444862 ATAAAATTTTCAC
1 ATAAAATTTTCAC
51444875 ATAAAATTTTCA
1 ATAAAATTTTCA
51444887 ATTTATGCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAAAATTTTCAC
Found at i:51449211 original size:5 final size:5
Alignment explanation
Indices: 51449201--51449233 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
51449191 ATTAAAACCT
*
51449201 TATAA TATAA TTTAA TATAA TATAA TAT-A TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATA
51449234 CACATGATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (5 bp):
TATAA
Found at i:51450012 original size:20 final size:20
Alignment explanation
Indices: 51449975--51450042 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 20
51449965 ATTATTATTT
51449975 TTTTATAAAAATCA-AAAAATAA
1 TTTT-TAAAAAT-ATAAAAAT-A
*
51449997 TTTTTAAAAAT-T-AAAATT
1 TTTTTAAAAATATAAAAATA
*
51450015 TATTTTAAAAGGTATAAAAATA
1 T-TTTTAAAA-ATATAAAAATA
51450037 TTTTTA
1 TTTTTA
51450043 TTTTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
18 1 0.03
19 13 0.34
20 1 0.03
21 13 0.34
22 10 0.26
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (20 bp):
TTTTTAAAAATATAAAAATA
Found at i:51451411 original size:20 final size:19
Alignment explanation
Indices: 51451385--51451429 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
51451375 AAATTAAGAG
51451385 TTATTTTTT-TTAATTTAA
1 TTATTTTTTATTAATTTAA
*
51451403 TGTATTTTTTATTCATTTAA
1 T-TATTTTTTATTAATTTAA
51451423 TTATTTT
1 TTATTTT
51451430 CCACATGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 1 0.04
19 14 0.58
20 9 0.38
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (19 bp):
TTATTTTTTATTAATTTAA
Found at i:51463380 original size:3 final size:3
Alignment explanation
Indices: 51463372--51463409 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
51463362 AATAGGAAGA
*
51463372 AAT AAT AAT AAT AAT GAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
51463410 ATCTATTGAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:51465000 original size:44 final size:44
Alignment explanation
Indices: 51464951--51465318 Score: 195
Period size: 44 Copynumber: 8.5 Consensus size: 44
51464941 ATCTACTCTG
*
51464951 CTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCA
* * ** * * ** * *
51464995 CTGTAACTTCAGGGAGATAGGATAGTGT-CTTCGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCA
*
51465038 CTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCA
* * *** ** *
51465082 CTGTAACTTCAGGGAGATAGGAT--TTCTGGCCTCGATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTT-T-ATTTTAATCCGCTCCA
** * * *
51465126 CTGTAACCTCAGGGAGATAAGAT-CTGAAATTTTTAGTCTGTTCCA
1 CTGTAACCTCAGGGAGATAAGATCCT-TTA-TTTTAATCCGCTCCA
* * ** *** * *
51465171 CTGTAATCTCAGGGAAATAAGA-CC--TGGTGCGATCTGCTCTA
1 CTGTAACCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCA
* *
51465212 CTGTAACTTCAGAGAGATAAGATCC-----TTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCA
* * * * * * * *
51465251 TTGTAACTTCAGGGAGATAGGATTACTATA-TTCAATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGA-TCCTTTATTTTAATCCGCTCCA
*
51465295 CTGTAATCTCAGGGAGATAAGATC
1 CTGTAACCTCAGGGAGATAAGATC
51465319 TGCAATTCTT
Statistics
Matches: 237, Mismatches: 74, Indels: 27
0.70 0.22 0.08
Matches are distributed among these distances:
39 28 0.12
40 2 0.01
41 26 0.11
42 4 0.02
43 34 0.14
44 112 0.47
45 31 0.13
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (44 bp):
CTGTAACCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCA
Found at i:51465055 original size:87 final size:88
Alignment explanation
Indices: 51464939--51465318 Score: 404
Period size: 87 Copynumber: 4.4 Consensus size: 88
51464929 AGACCTGATG
* * *
51464939 CGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTT
1 CGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTT
*
51465004 CAGGGAGATAGGA-TAGTGTCTT
66 CAGGGAGATAGGATTACTGTCTT
*
51465026 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTT
1 CGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTT
* * *
51465091 CAGGGAGATAGGATTTCTGGCCT
66 CAGGGAGATAGGATTACTGTCTT
* ** * * *
51465114 CGATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTTTTAGTCTGTTCCACTGTAA-
1 CGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCCT-TTA-TTTTAATCCGCTCCACTGTAAC
* * * * *
51465177 TCTCAGGGAAATAAGA--CCTG-GTG
64 T-TCAGGGAGATAGGATTACTGTCTT
** * * *
51465200 CGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCC-----TTTAATCCGCTCCATTGTAACTT
1 CGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTT
* *
51465260 CAGGGAGATAGGATTACTATATT
66 CAGGGAGATAGGATTACTGTCTT
* *
51465283 CAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATC
1 CGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATC
51465319 TGCAATTCTT
Statistics
Matches: 244, Mismatches: 40, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
80 28 0.11
81 1 0.00
82 2 0.01
83 31 0.13
86 32 0.13
87 80 0.33
88 40 0.16
89 30 0.12
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (88 bp):
CGATCTGCTCCGCTGTAACCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTT
CAGGGAGATAGGATTACTGTCTT
Found at i:51471472 original size:41 final size:41
Alignment explanation
Indices: 51471415--51471499 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
51471405 TGTATATTGC
51471415 CTTATAGTTAAGGGTCTTATGCTTCTTATAGTTTTGGTGTG
1 CTTATAGTTAAGGGTCTTATGCTTCTTATAGTTTTGGTGTG
51471456 CTTATAGTTAAGGGTCTTATGCTTCTTATAGTTTTGGTGTG
1 CTTATAGTTAAGGGTCTTATGCTTCTTATAGTTTTGGTGTG
51471497 CTT
1 CTT
51471500 TGGCTTAGGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.16, C:0.11, G:0.24, T:0.49
Consensus pattern (41 bp):
CTTATAGTTAAGGGTCTTATGCTTCTTATAGTTTTGGTGTG
Found at i:51473523 original size:19 final size:20
Alignment explanation
Indices: 51473487--51473525 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
51473477 TAAATATATA
*
51473487 TTTTAAAAGTTTTCTATAAT
1 TTTTAAAAATTTTCTATAAT
51473507 TTTTAAAAATTTT-TATAAT
1 TTTTAAAAATTTTCTATAAT
51473526 AAAAAAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (20 bp):
TTTTAAAAATTTTCTATAAT
Found at i:51474014 original size:26 final size:27
Alignment explanation
Indices: 51473962--51474024 Score: 119
Period size: 26 Copynumber: 2.4 Consensus size: 27
51473952 TAATAAAAAA
51473962 ACCAAAATATTATAACTTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTATTT
51473989 ACCAAAATATTATAA-TTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTATTT
51474015 ACCAAAATAT
1 ACCAAAATAT
51474025 AAAAAAAAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 21 0.58
27 15 0.42
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (27 bp):
ACCAAAATATTATAACTTTTTTTATTT
Found at i:51474367 original size:20 final size:20
Alignment explanation
Indices: 51474344--51474381 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51474334 ATTTTATTAT
51474344 TAAAGTAAATA-TATTTTACC
1 TAAAGTAAA-ACTATTTTACC
51474364 TAAAGTAAAACTATTTTA
1 TAAAGTAAAACTATTTTA
51474382 AAAAGTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.39
Consensus pattern (20 bp):
TAAAGTAAAACTATTTTACC
Found at i:51474663 original size:19 final size:19
Alignment explanation
Indices: 51474639--51474695 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 19
51474629 TCTAATTAAG
51474639 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
* * *
51474658 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTAATT
51474676 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
51474695 T
1 T
51474696 TAAAAAAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
18 15 0.48
19 16 0.52
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATAACTCTATTTTAATT
Found at i:51474781 original size:18 final size:19
Alignment explanation
Indices: 51474732--51474789 Score: 82
Period size: 19 Copynumber: 3.1 Consensus size: 19
51474722 CTTAATTTTT
51474732 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
51474751 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
51474769 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
51474788 TT
1 TT
51474790 GCTTAATTAG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
18 15 0.47
19 17 0.53
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:51474857 original size:134 final size:136
Alignment explanation
Indices: 51474669--51474923 Score: 469
Period size: 134 Copynumber: 1.9 Consensus size: 136
51474659 AATAAACTAT
51474669 TCTCATTTAATAACTCTATTTTAATTTTAAAAAAATTAAATTAAAATAATTTACTTAATTTTTTT
1 TCTCATTTAATAACTCTATTTTAATTTTAAAAAAATTAAATTAAAATAATTTACTTAATTTTTTT
*
51474734 AAATTAAAATAGAGTTATTAAATGAGAATAGTTTATTAAATTAAAATAGAGTTATTGCTTAATTA
66 AAATTAAAATAGAGTTATTAAATGAGAATACTTTATTAAATTAAAATAGAGTTATTGCTTAATTA
51474799 GAATTC
131 GAATTC
*
51474805 TCTCATTTAATAACTCTATTTTAA-TTTAAAAAAATT-AATTAAAATAGTTTACTTAATTTTTTT
1 TCTCATTTAATAACTCTATTTTAATTTTAAAAAAATTAAATTAAAATAATTTACTTAATTTTTTT
*
51474868 AAATTAAAATAGAGTTATTAAATGAGAATACTTTATTAAATTAAAATGGAGTTATT
66 AAATTAAAATAGAGTTATTAAATGAGAATACTTTATTAAATTAAAATAGAGTTATT
51474924 AAATGAGAAT
Statistics
Matches: 116, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
134 80 0.69
135 12 0.10
136 24 0.21
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (136 bp):
TCTCATTTAATAACTCTATTTTAATTTTAAAAAAATTAAATTAAAATAATTTACTTAATTTTTTT
AAATTAAAATAGAGTTATTAAATGAGAATACTTTATTAAATTAAAATAGAGTTATTGCTTAATTA
GAATTC
Found at i:51474910 original size:37 final size:37
Alignment explanation
Indices: 51474866--51474998 Score: 248
Period size: 37 Copynumber: 3.6 Consensus size: 37
51474856 CTTAATTTTT
*
51474866 TTAAATTAAAATAGAGTTATTAAATGAGAATACTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
*
51474903 TTAAATTAAAATGGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
51474940 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
51474977 TTAAATTAAAATAGAGTTATTA
1 TTAAATTAAAATAGAGTTATTA
51474999 CTTAATTAGA
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 93 1.00
ACGTcount: A:0.48, C:0.01, G:0.13, T:0.38
Consensus pattern (37 bp):
TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
Found at i:51474981 original size:134 final size:133
Alignment explanation
Indices: 51474697--51474966 Score: 339
Period size: 134 Copynumber: 2.0 Consensus size: 133
51474687 TTTTAATTTT
51474697 AAAAAAATTAAATTAAAATAATTTACTTAATTTTTTTAAATTAAAATAGAGTTATTAAATGAGAA
1 AAAAAAATT-AATTAAAATAATTTACTTAATTTTTTTAAATTAAAATAGAGTTATTAAATGAGAA
* * * * * * **
51474762 TAGTTTATTAAATTAAAATAGAGTTATTGCTTAATTAGAATTCTCTCATTTAATAACTCTATTTT
65 TACTTTATTAAATTAAAATAGAGTTATT-CTAAATGAGAATACTCTCATTAAATAAATAGATTTT
* *
51474827 AATTT
129 AAATG
*
51474832 AAAAAAATTAATTAAAATAGTTTACTTAATTTTTTTAAATTAAAATAGAGTTATTAAATGAGAAT
1 AAAAAAATTAATTAAAATAATTTACTTAATTTTTTTAAATTAAAATAGAGTTATTAAATGAGAAT
* * *
51474897 ACTTTATTAAATTAAAATGGAGTTA-T-TAAATGAGAATAGT-TTATTAAATTAAAATAGAGTTA
66 ACTTTATTAAATTAAAATAGAGTTATTCTAAATGAGAATACTCTCATTAAA-T-AAATAGA-TT-
51474959 TTAAATG
127 TTAAATG
51474966 A
1 A
51474967 GAATAGTTTA
Statistics
Matches: 117, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
130 6 0.05
131 11 0.09
132 4 0.03
133 3 0.03
134 84 0.72
135 9 0.08
ACGTcount: A:0.47, C:0.03, G:0.09, T:0.41
Consensus pattern (133 bp):
AAAAAAATTAATTAAAATAATTTACTTAATTTTTTTAAATTAAAATAGAGTTATTAAATGAGAAT
ACTTTATTAAATTAAAATAGAGTTATTCTAAATGAGAATACTCTCATTAAATAAATAGATTTTAA
ATG
Found at i:51474989 original size:18 final size:18
Alignment explanation
Indices: 51474866--51474990 Score: 126
Period size: 18 Copynumber: 6.8 Consensus size: 18
51474856 CTTAATTTTT
*
51474866 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAG-TTTA
* * *
51474885 TTAAATGAGAATACTTTA
1 TTAAATTAAAATAGTTTA
51474903 TTAAATTAAAATGGAG-TTA
1 TTAAATTAAAAT--AGTTTA
* *
51474922 TTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGTTTA
*
51474940 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAG-TTTA
* *
51474959 TTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGTTTA
51474977 TTAAATTAAAATAG
1 TTAAATTAAAATAG
51474991 AGTTATTACT
Statistics
Matches: 85, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
17 2 0.02
18 43 0.51
19 39 0.46
20 1 0.01
ACGTcount: A:0.49, C:0.01, G:0.13, T:0.38
Consensus pattern (18 bp):
TTAAATTAAAATAGTTTA
Found at i:51475003 original size:18 final size:19
Alignment explanation
Indices: 51474866--51474998 Score: 146
Period size: 19 Copynumber: 7.2 Consensus size: 19
51474856 CTTAATTTTT
51474866 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * **
51474885 TTAAATGAGAATA-CTTTA
1 TTAAATTAAAATAGAGTTA
*
51474903 TTAAATTAAAATGGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
51474922 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
51474940 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
51474959 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
51474977 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
51474996 TTA
1 TTA
51474999 CTTAATTAGA
Statistics
Matches: 89, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
18 43 0.48
19 46 0.52
ACGTcount: A:0.48, C:0.01, G:0.13, T:0.38
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:51475548 original size:27 final size:27
Alignment explanation
Indices: 51475509--51475567 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
51475499 TTTTAGTCCT
*
51475509 TTGGCGCCATTGGTGCCGCCAATCTCA
1 TTGGCACCATTGGTGCCGCCAATCTCA
* * * *
51475536 TTGGCACCTTTGGTGCCTCCAATGTGA
1 TTGGCACCATTGGTGCCGCCAATCTCA
51475563 TTGGC
1 TTGGC
51475568 CTGATCAGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.14, C:0.29, G:0.27, T:0.31
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCTCA
Found at i:51475637 original size:26 final size:27
Alignment explanation
Indices: 51475606--51475667 Score: 108
Period size: 26 Copynumber: 2.3 Consensus size: 27
51475596 CTGTTTTTTT
51475606 ATATTTTGGTAAATAAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
*
51475632 ATATTTTGATAAATAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
51475659 ATATTTTGG
1 ATATTTTGG
51475668 GTTTTTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
26 20 0.61
27 13 0.39
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAGTTATA
Found at i:51477176 original size:3 final size:3
Alignment explanation
Indices: 51477168--51477213 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
51477158 TCGCACAGAA
51477168 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
51477214 CAGAATAGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:51484733 original size:5 final size:5
Alignment explanation
Indices: 51484723--51484764 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
51484713 TGAGCATTCG
51484723 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA AT
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA AT
51484765 AAAAAATTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.21
Consensus pattern (5 bp):
ATCGA
Found at i:51485944 original size:9 final size:9
Alignment explanation
Indices: 51485927--51485957 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
51485917 TCGAGTTGAT
51485927 TCGAATAAC
1 TCGAATAAC
*
51485936 TCGATTAAC
1 TCGAATAAC
51485945 TCGAATAAC
1 TCGAATAAC
51485954 TCGA
1 TCGA
51485958 TTTGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:51487110 original size:30 final size:30
Alignment explanation
Indices: 51487076--51487170 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
51487066 ATAATTTTTT
51487076 TTTTATTTAGGCTATTTATAACTTATTAAA
1 TTTTATTTAGGCTATTTATAACTTATTAAA
* * * * *
51487106 TTTTAAATTA-GCTATGATAAAATTGTATT--T
1 TTTT-ATTTAGGCTAT-TTATAACT-TATTAAA
51487136 TTTTATTTAGGCTATTTATAACTTATTAAA
1 TTTTATTTAGGCTATTTATAACTTATTAAA
51487166 TTTTA
1 TTTTA
51487171 AATTAACGAT
Statistics
Matches: 49, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
28 4 0.08
29 9 0.18
30 23 0.47
31 9 0.18
32 4 0.08
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (30 bp):
TTTTATTTAGGCTATTTATAACTTATTAAA
Found at i:51487156 original size:60 final size:60
Alignment explanation
Indices: 51487073--51487192 Score: 222
Period size: 60 Copynumber: 2.0 Consensus size: 60
51487063 AAAATAATTT
* *
51487073 TTTTTTTATTTAGGCTATTTATAACTTATTAAATTTTAAATTAGCTATGATAAAATTGTA
1 TTTTTTTATTTAGGCTATTTATAACTTATTAAATTTTAAATTAACGATGATAAAATTGTA
51487133 TTTTTTTATTTAGGCTATTTATAACTTATTAAATTTTAAATTAACGATGATAAAATTGTA
1 TTTTTTTATTTAGGCTATTTATAACTTATTAAATTTTAAATTAACGATGATAAAATTGTA
51487193 CTTTCTCTTA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (60 bp):
TTTTTTTATTTAGGCTATTTATAACTTATTAAATTTTAAATTAACGATGATAAAATTGTA
Found at i:51487252 original size:16 final size:16
Alignment explanation
Indices: 51487233--51487273 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
51487223 AAAATTTTTA
51487233 AAAATTATAAATAT-AT
1 AAAATTATAAA-ATGAT
51487249 AAAA-TATTAAAATGAT
1 AAAATTA-TAAAATGAT
51487265 AAAATTATA
1 AAAATTATA
51487274 TTTTAATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 4 0.18
16 16 0.73
17 2 0.09
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (16 bp):
AAAATTATAAAATGAT
Found at i:51491935 original size:6 final size:6
Alignment explanation
Indices: 51491924--51491964 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
51491914 AGAAGGACAG
*
51491924 GAGTTA GAGTTAA GAGTCA GAGTTAA GAGTTA GAGTTA GAG
1 GAGTTA GAGTT-A GAGTTA GAGTT-A GAGTTA GAGTTA GAG
51491965 GAAGAGGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 20 0.65
7 11 0.35
ACGTcount: A:0.37, C:0.02, G:0.34, T:0.27
Consensus pattern (6 bp):
GAGTTA
Found at i:51491945 original size:13 final size:13
Alignment explanation
Indices: 51491924--51491961 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
51491914 AGAAGGACAG
51491924 GAGTTAGAGTTAA
1 GAGTTAGAGTTAA
*
51491937 GAGTCAGAGTTAA
1 GAGTTAGAGTTAA
51491950 GAGTTAGAGTTA
1 GAGTTAGAGTTA
51491962 GAGGAAGAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.37, C:0.03, G:0.32, T:0.29
Consensus pattern (13 bp):
GAGTTAGAGTTAA
Found at i:51491948 original size:19 final size:19
Alignment explanation
Indices: 51491924--51491964 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
51491914 AGAAGGACAG
51491924 GAGTT-AGAGTTAAGAGTCA
1 GAGTTAAGAGTT-AGAGTCA
*
51491943 GAGTTAAGAGTTAGAGTTA
1 GAGTTAAGAGTTAGAGTCA
51491962 GAG
1 GAG
51491965 GAAGAGGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.37, C:0.02, G:0.34, T:0.27
Consensus pattern (19 bp):
GAGTTAAGAGTTAGAGTCA
Found at i:51496799 original size:31 final size:31
Alignment explanation
Indices: 51496761--51496829 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 31
51496751 TTACAATTTG
** *
51496761 GTCACTGAATTATTC-AAAAGTTTTCATTTAA
1 GTCACTGAACCATTCAAAAAATTTT-ATTTAA
51496792 GTCACTGAACCATTCAAAAAATTTTATTTAA
1 GTCACTGAACCATTCAAAAAATTTTATTTAA
51496823 GTCACTG
1 GTCACTG
51496830 GGCTTTTAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 26 0.76
32 8 0.24
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (31 bp):
GTCACTGAACCATTCAAAAAATTTTATTTAA
Found at i:51508306 original size:65 final size:65
Alignment explanation
Indices: 51508202--51508335 Score: 223
Period size: 65 Copynumber: 2.1 Consensus size: 65
51508192 GTTGTTCGCT
**
51508202 AAGCCGGAGCCAAGGTAAAGGTTTTGCAAGTGTCCGAATCTGCCACACAAAAAACACACAAACAG
1 AAGCCGGAGCCAAGACAAAGGTTTTGCAAGTGTCCGAATCTGCCACACAAAAAACACACAAACAG
* **
51508267 AAGCCGGAGCCAAGACAAAGGTTTTGCAAGTGTCCGAATCTGCCATACAAAAAACACATTAACAG
1 AAGCCGGAGCCAAGACAAAGGTTTTGCAAGTGTCCGAATCTGCCACACAAAAAACACACAAACAG
51508332 AAGC
1 AAGC
51508336 AATTCAAATT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.15
Consensus pattern (65 bp):
AAGCCGGAGCCAAGACAAAGGTTTTGCAAGTGTCCGAATCTGCCACACAAAAAACACACAAACAG
Found at i:51521382 original size:124 final size:124
Alignment explanation
Indices: 51521159--51521410 Score: 468
Period size: 124 Copynumber: 2.0 Consensus size: 124
51521149 TTGGTTATGA
*
51521159 GGCTATGATCCTCTAAATGTATCAAAAAAATGTTGAAAATTGAGCATACCTTGTTTGATGCATAC
1 GGCTATGATCCTCTAAATGTATCAAAAAAATGTAGAAAATTGAGCATACCTTGTTTGATGCATAC
* *
51521224 TTAACATTCACCATTGAGTTTGAGTAACAGAATATGGTAATTTTGAATTTCTATTTGAG
66 TTAACATTCACCATTGAGTTTGAGTAACAAAATATGGTAATTTGGAATTTCTATTTGAG
*
51521283 GGCTATGATCCTCTAAATGTATCAAAAATATGTAGAAAATTGAGCATACCTTGTTTGATGCATAC
1 GGCTATGATCCTCTAAATGTATCAAAAAAATGTAGAAAATTGAGCATACCTTGTTTGATGCATAC
51521348 TTAACATTCACCATTGAGTTTGAGTAACAAAATATGGTAATTTGGAATTTCTATTTGAG
66 TTAACATTCACCATTGAGTTTGAGTAACAAAATATGGTAATTTGGAATTTCTATTTGAG
51521407 GGCT
1 GGCT
51521411 CATATTTCAT
Statistics
Matches: 124, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
124 124 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (124 bp):
GGCTATGATCCTCTAAATGTATCAAAAAAATGTAGAAAATTGAGCATACCTTGTTTGATGCATAC
TTAACATTCACCATTGAGTTTGAGTAACAAAATATGGTAATTTGGAATTTCTATTTGAG
Found at i:51535043 original size:17 final size:17
Alignment explanation
Indices: 51534967--51535083 Score: 94
Period size: 17 Copynumber: 6.9 Consensus size: 17
51534957 ACCCAGACTT
51534967 CAACACTGTGAGCTCAC
1 CAACACTGTGAGCTCAC
* * *
51534984 CATA-TCTATAAGCTCAC
1 CA-ACACTGTGAGCTCAC
* *
51535001 CAACAATATGAGCTCAC
1 CAACACTGTGAGCTCAC
*
51535018 CATA-TCTGTGAGCTCAC
1 CA-ACACTGTGAGCTCAC
*
51535035 CAACACTGTGAGCTCAT
1 CAACACTGTGAGCTCAC
* *
51535052 CAACACTATGTGCTCAC
1 CAACACTGTGAGCTCAC
* * *
51535069 CGAGACTGCGAGCTC
1 CAACACTGTGAGCTC
51535084 CTTACCTTGC
Statistics
Matches: 77, Mismatches: 19, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
16 2 0.03
17 73 0.95
18 2 0.03
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.22
Consensus pattern (17 bp):
CAACACTGTGAGCTCAC
Found at i:51535049 original size:51 final size:51
Alignment explanation
Indices: 51534972--51535069 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
51534962 GACTTCAACA
*
51534972 CTGTGAGCTCACCATATCTATAAGCTCACCAACAATATGAGCTCACCATAT
1 CTGTGAGCTCACCATAACTATAAGCTCACCAACAATATGAGCTCACCATAT
* * * * *
51535023 CTGTGAGCTCACCA-ACACTGTGAGCTCATCAACACTATGTGCTCACC
1 CTGTGAGCTCACCATA-ACTATAAGCTCACCAACAATATGAGCTCACC
51535070 GAGACTGCGA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
50 1 0.03
51 39 0.98
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.24
Consensus pattern (51 bp):
CTGTGAGCTCACCATAACTATAAGCTCACCAACAATATGAGCTCACCATAT
Found at i:51535069 original size:34 final size:34
Alignment explanation
Indices: 51534967--51535050 Score: 132
Period size: 34 Copynumber: 2.5 Consensus size: 34
51534957 ACCCAGACTT
*
51534967 CAACACTGTGAGCTCACCATATCTATAAGCTCAC
1 CAACACTGTGAGCTCACCATATCTATGAGCTCAC
* * *
51535001 CAACAATATGAGCTCACCATATCTGTGAGCTCAC
1 CAACACTGTGAGCTCACCATATCTATGAGCTCAC
51535035 CAACACTGTGAGCTCA
1 CAACACTGTGAGCTCA
51535051 TCAACACTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.32, C:0.31, G:0.14, T:0.23
Consensus pattern (34 bp):
CAACACTGTGAGCTCACCATATCTATGAGCTCAC
Found at i:51548271 original size:9 final size:9
Alignment explanation
Indices: 51548242--51548276 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
51548232 AATTGAAATG
51548242 GAAGCATGT
1 GAAGCATGT
* *
51548251 GAAACATAT
1 GAAGCATGT
51548260 GAAGCATGT
1 GAAGCATGT
51548269 GAAGCATG
1 GAAGCATG
51548277 CCACTCTATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.40, C:0.11, G:0.29, T:0.20
Consensus pattern (9 bp):
GAAGCATGT
Found at i:51559957 original size:22 final size:21
Alignment explanation
Indices: 51559909--51559957 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
51559899 ATTTTTGGAA
51559909 AAAAATAAAATAAGATAAAAT
1 AAAAATAAAATAAGATAAAAT
*
51559930 AAAAATAAATTAA-ACTCAAAAT
1 AAAAATAAAATAAGA-T-AAAAT
51559952 AAAAAT
1 AAAAAT
51559958 TCCACTATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 1 0.04
21 13 0.52
22 11 0.44
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.20
Consensus pattern (21 bp):
AAAAATAAAATAAGATAAAAT
Found at i:51567621 original size:13 final size:13
Alignment explanation
Indices: 51567600--51567630 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
51567590 TGTAAGTCAA
*
51567600 AACTGATTTACCT
1 AACTCATTTACCT
51567613 AACTCATTTACCT
1 AACTCATTTACCT
51567626 AACTC
1 AACTC
51567631 GTATGTTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.29, G:0.03, T:0.35
Consensus pattern (13 bp):
AACTCATTTACCT
Found at i:51581175 original size:3 final size:3
Alignment explanation
Indices: 51581169--51581218 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
51581159 ATTATATGTT
51581169 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
51581217 AT
1 AT
51581219 GAAAACAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:51585127 original size:48 final size:48
Alignment explanation
Indices: 51585067--51585161 Score: 172
Period size: 48 Copynumber: 2.0 Consensus size: 48
51585057 TCAAAAGATC
*
51585067 CTATTCCGAAGTGAGACTATCGTGAGTGGAGGTTGTTTCAAAACTAGT
1 CTATTCCAAAGTGAGACTATCGTGAGTGGAGGTTGTTTCAAAACTAGT
*
51585115 CTATTCCAAAGTGAGACTATCGTGAGTGGAGGTTGTTTCAGAACTAG
1 CTATTCCAAAGTGAGACTATCGTGAGTGGAGGTTGTTTCAAAACTAG
51585162 ACTTTTTACA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (48 bp):
CTATTCCAAAGTGAGACTATCGTGAGTGGAGGTTGTTTCAAAACTAGT
Found at i:51586524 original size:44 final size:44
Alignment explanation
Indices: 51586461--51586550 Score: 155
Period size: 44 Copynumber: 2.0 Consensus size: 44
51586451 AAAGCAAGGT
*
51586461 TAAGAAAGTCTAGGGACTCTTGATGGAGTT-TTTGTAGAAGATGA
1 TAAGAAAGTCCAGGGACTCTTGATGGAGTTCTTT-TAGAAGATGA
51586505 TAAGAAAGTCCAGGGACTCTTGATGGAGTTCTTTTAGAAGATGA
1 TAAGAAAGTCCAGGGACTCTTGATGGAGTTCTTTTAGAAGATGA
51586549 TA
1 TA
51586551 GCAACAACAA
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 41 0.93
45 3 0.07
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (44 bp):
TAAGAAAGTCCAGGGACTCTTGATGGAGTTCTTTTAGAAGATGA
Found at i:51587972 original size:22 final size:23
Alignment explanation
Indices: 51587927--51587974 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
51587917 GATTGTCCTT
* *
51587927 AATGGTTTTTGCACGTAAAGCAA
1 AATGGTTTTTACACGCAAAGCAA
*
51587950 AATGGTTTTTACACGCACA-CAA
1 AATGGTTTTTACACGCAAAGCAA
51587972 AAT
1 AAT
51587975 TGTCTTTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (23 bp):
AATGGTTTTTACACGCAAAGCAA
Found at i:51590219 original size:19 final size:19
Alignment explanation
Indices: 51590183--51590221 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
51590173 TTTTACGGGG
* *
51590183 AAAAATAAAATATTGAAAT
1 AAAAAGAAAATATAGAAAT
*
51590202 AAAAAGAAAATCTAGAAAT
1 AAAAAGAAAATATAGAAAT
51590221 A
1 A
51590222 TGATTGCGGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.21
Consensus pattern (19 bp):
AAAAAGAAAATATAGAAAT
Found at i:51597802 original size:129 final size:129
Alignment explanation
Indices: 51597572--51597832 Score: 396
Period size: 129 Copynumber: 2.0 Consensus size: 129
51597562 AGGATGGAGG
* * **
51597572 AAGGATAGGCTATTGATGAGGAGGATATTGAGTTGCTGGTAGATGAAGTTTTAATACACTTTGTG
1 AAGGATAGGCTATGGATGAGGAGGATATTGAGTTGCTGGTAGATGAAGTTTCAATACACTTCATG
* * *
51597637 AATAGAGTCCCATCGATTAAATTTTCTGATAGAATTCATACACTTGTCTAAAACTATCATCATA
66 AATAGAGTCACATCGATTAAATTTTCTGATAAAATTCATACACTTGTCCAAAACTATCATCATA
* * * *
51597701 AAGGATAGGCTGTGGATGAGGAGGATATTGAGTTGTTGTTAGGTGAAGTTTCAATACACTTCATG
1 AAGGATAGGCTATGGATGAGGAGGATATTGAGTTGCTGGTAGATGAAGTTTCAATACACTTCATG
* * *
51597766 AATAGAGTCACATCGATTAAATTTTCTGATAAAATTCATACGCTTTTCCAAAACTGTCATCATA
66 AATAGAGTCACATCGATTAAATTTTCTGATAAAATTCATACACTTGTCCAAAACTATCATCATA
51597830 AAG
1 AAG
51597833 CTTCTTGGAA
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
129 118 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (129 bp):
AAGGATAGGCTATGGATGAGGAGGATATTGAGTTGCTGGTAGATGAAGTTTCAATACACTTCATG
AATAGAGTCACATCGATTAAATTTTCTGATAAAATTCATACACTTGTCCAAAACTATCATCATA
Found at i:51602836 original size:18 final size:20
Alignment explanation
Indices: 51602815--51602863 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 20
51602805 AAAATATATA
*
51602815 AAATAACTAAAAA-TT-TCT
1 AAATAACTAAAAAGTTACCT
**
51602833 AAATTTCTAAAAAGTTACCT
1 AAATAACTAAAAAGTTACCT
51602853 AAATAA-TAAAA
1 AAATAACTAAAA
51602864 GAACTAAAGA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
18 11 0.46
19 7 0.29
20 6 0.25
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (20 bp):
AAATAACTAAAAAGTTACCT
Found at i:51603932 original size:16 final size:17
Alignment explanation
Indices: 51603902--51603934 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
51603892 TTAATTTTTT
51603902 CTTTCTTGTTCTTTTAA
1 CTTTCTTGTTCTTTTAA
*
51603919 CTTTCTT-TTTTTTTAA
1 CTTTCTTGTTCTTTTAA
51603935 TTATTTTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.12, C:0.15, G:0.03, T:0.70
Consensus pattern (17 bp):
CTTTCTTGTTCTTTTAA
Found at i:51604105 original size:31 final size:31
Alignment explanation
Indices: 51604067--51604135 Score: 138
Period size: 31 Copynumber: 2.2 Consensus size: 31
51604057 TGATGACTTC
51604067 CGACTTCATGCTTCTTTTTTCATTGCCAATT
1 CGACTTCATGCTTCTTTTTTCATTGCCAATT
51604098 CGACTTCATGCTTCTTTTTTCATTGCCAATT
1 CGACTTCATGCTTCTTTTTTCATTGCCAATT
51604129 CGACTTC
1 CGACTTC
51604136 CTGATATATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.16, C:0.28, G:0.10, T:0.46
Consensus pattern (31 bp):
CGACTTCATGCTTCTTTTTTCATTGCCAATT
Found at i:51605000 original size:20 final size:20
Alignment explanation
Indices: 51604964--51605002 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
51604954 AACTTTTAAT
*
51604964 AAAAATTAAGGTTATAAAAG
1 AAAAATTAAGGTAATAAAAG
51604984 AAAAA-TAAGGATAATAAAA
1 AAAAATTAAGG-TAATAAAA
51605003 ATATATAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.67, C:0.00, G:0.13, T:0.21
Consensus pattern (20 bp):
AAAAATTAAGGTAATAAAAG
Found at i:51605908 original size:15 final size:15
Alignment explanation
Indices: 51605888--51605918 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
51605878 TTAGTCAATT
51605888 TATTACTCTTTTGAA
1 TATTACTCTTTTGAA
51605903 TATTACTCTTTTGAA
1 TATTACTCTTTTGAA
51605918 T
1 T
51605919 GATTTAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.06, T:0.55
Consensus pattern (15 bp):
TATTACTCTTTTGAA
Found at i:51606342 original size:21 final size:21
Alignment explanation
Indices: 51606303--51606344 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
51606293 GTATTAACAA
* *
51606303 GCGATAGGCCCAAATTTACGT
1 GCGATAGCCCCAAACTTACGT
*
51606324 GCGATAGCCCCAAGCTTACGT
1 GCGATAGCCCCAAACTTACGT
51606345 TCAATTGGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (21 bp):
GCGATAGCCCCAAACTTACGT
Found at i:51606987 original size:30 final size:30
Alignment explanation
Indices: 51606943--51607114 Score: 245
Period size: 30 Copynumber: 5.7 Consensus size: 30
51606933 TTTGAACCTA
*
51606943 CATGGCCATGTGTCACACACGGCCGTGTCG
1 CATGGCCGTGTGTCACACACGGCCGTGTCG
* * * *
51606973 CATGGTCGTATGTCATACACGGTCGTGTCG
1 CATGGCCGTGTGTCACACACGGCCGTGTCG
**
51607003 CATGGCCGTGTGTCACACATAGCCGTGTCG
1 CATGGCCGTGTGTCACACACGGCCGTGTCG
*
51607033 CATGGCCGTGTGTCACACATGGCCGTGTCG
1 CATGGCCGTGTGTCACACACGGCCGTGTCG
* *
51607063 CATGGCCGTGTGTCACACATGGCTGTGTCG
1 CATGGCCGTGTGTCACACACGGCCGTGTCG
*
51607093 CATGGCCGTATGTCACACACGG
1 CATGGCCGTGTGTCACACACGG
51607115 ATGAGACACA
Statistics
Matches: 127, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 127 1.00
ACGTcount: A:0.16, C:0.29, G:0.31, T:0.24
Consensus pattern (30 bp):
CATGGCCGTGTGTCACACACGGCCGTGTCG
Found at i:51607029 original size:17 final size:17
Alignment explanation
Indices: 51607003--51607111 Score: 89
Period size: 15 Copynumber: 7.1 Consensus size: 17
51606993 GGTCGTGTCG
51607003 CATGGCCGTGTGTCACA
1 CATGGCCGTGTGTCACA
* *
51607020 CATAGCC--GTGT--CG
1 CATGGCCGTGTGTCACA
51607033 CATGGCCGTGTGTCACA
1 CATGGCCGTGTGTCACA
*
51607050 CATGGCC--GTGT--CG
1 CATGGCCGTGTGTCACA
51607063 CATGGCCGTGTGTCACA
1 CATGGCCGTGTGTCACA
*
51607080 CATGG-C-TGTGT--CG
1 CATGGCCGTGTGTCACA
*
51607093 CATGGCCGTATGTCACA
1 CATGGCCGTGTGTCACA
51607110 CA
1 CA
51607112 CGGATGAGAC
Statistics
Matches: 71, Mismatches: 9, Indels: 24
0.68 0.09 0.23
Matches are distributed among these distances:
13 21 0.30
14 1 0.01
15 25 0.35
16 1 0.01
17 23 0.32
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.24
Consensus pattern (17 bp):
CATGGCCGTGTGTCACA
Found at i:51607042 original size:13 final size:13
Alignment explanation
Indices: 51606996--51607101 Score: 59
Period size: 13 Copynumber: 7.2 Consensus size: 13
51606986 CATACACGGT
51606996 CGTGTCGCATGGC
1 CGTGTCGCATGGC
* *
51607009 CGTGTGTCACACATAGC
1 C--GTGT--CGCATGGC
51607026 CGTGTCGCATGGC
1 CGTGTCGCATGGC
*
51607039 CGTGTGTCACACATGGC
1 C--GTGT--CGCATGGC
51607056 CGTGTCGCATGGC
1 CGTGTCGCATGGC
*
51607069 CGTGTGTCACACATGGC
1 C--GTGT--CGCATGGC
*
51607086 TGTGTCGCATGGC
1 CGTGTCGCATGGC
51607099 CGT
1 CGT
51607102 ATGTCACACA
Statistics
Matches: 71, Mismatches: 10, Indels: 24
0.68 0.10 0.23
Matches are distributed among these distances:
13 25 0.35
15 24 0.34
17 22 0.31
ACGTcount: A:0.13, C:0.29, G:0.33, T:0.25
Consensus pattern (13 bp):
CGTGTCGCATGGC
Found at i:51607991 original size:21 final size:21
Alignment explanation
Indices: 51607962--51608025 Score: 101
Period size: 21 Copynumber: 3.0 Consensus size: 21
51607952 GAAACACGCC
51607962 AACAAAAGCTCATAAGAGCTG
1 AACAAAAGCTCATAAGAGCTG
* *
51607983 AACAGAAGCACATAAGAGCTG
1 AACAAAAGCTCATAAGAGCTG
*
51608004 AACAAAAGCTCAAAAGAGCTG
1 AACAAAAGCTCATAAGAGCTG
51608025 A
1 A
51608026 TCCACCCGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.50, C:0.19, G:0.20, T:0.11
Consensus pattern (21 bp):
AACAAAAGCTCATAAGAGCTG
Found at i:51624225 original size:11 final size:10
Alignment explanation
Indices: 51624198--51624245 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
51624188 ATCAATTTAA
51624198 TTTT-TTTTC
1 TTTTATTTTC
51624207 TTTTATTTTC
1 TTTTATTTTC
*
51624217 TTTTAATTTAC
1 TTTT-ATTTTC
51624228 -TTT-TTTTC
1 TTTTATTTTC
51624236 -TTTATTTTC
1 TTTTATTTTC
51624245 T
1 T
51624246 ATTCTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
8 7 0.21
9 9 0.27
10 12 0.36
11 5 0.15
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTATTTTC
Found at i:51624821 original size:18 final size:18
Alignment explanation
Indices: 51624774--51624835 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 18
51624764 AAACTATGTT
*
51624774 AAAAGATATGGAGAATGGAGG
1 AAAAGA-ATGGAGAA-GCA-G
*
51624795 AAAACAATGGAGAAGCAG
1 AAAAGAATGGAGAAGCAG
* *
51624813 AAAAGAATGAAAAAGACAG
1 AAAAGAATGGAGAAG-CAG
51624832 AAAA
1 AAAA
51624836 ATAACATAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 13 0.37
19 9 0.26
20 8 0.23
21 5 0.14
ACGTcount: A:0.60, C:0.05, G:0.27, T:0.08
Consensus pattern (18 bp):
AAAAGAATGGAGAAGCAG
Found at i:51628387 original size:16 final size:16
Alignment explanation
Indices: 51628366--51628398 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
51628356 TTTTTTTTTC
*
51628366 TAAAAAATCAAAAAAA
1 TAAAAAATAAAAAAAA
51628382 TAAAAAATAAAAAAAA
1 TAAAAAATAAAAAAAA
51628398 T
1 T
51628399 CATATTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (16 bp):
TAAAAAATAAAAAAAA
Found at i:51628437 original size:29 final size:29
Alignment explanation
Indices: 51628402--51628537 Score: 173
Period size: 29 Copynumber: 4.6 Consensus size: 29
51628392 AAAAAATCAT
*
51628402 ATTTTGACCCCTAAACTTTTTGAAATTAT
1 ATTTTGACCCCTAAACTTTTTGAAATTAC
* *
51628431 ATTTTGACCCCTAAAATTTTTCAAAATTAC
1 ATTTTGACCCCTAAACTTTTT-GAAATTAC
* * *
51628461 ATTTTTACCCTTAACCTTTTTGAAATTAC
1 ATTTTGACCCCTAAACTTTTTGAAATTAC
* *
51628490 ATTTTGACCCCTAAACTTTATCAAACTTAC
1 ATTTTGACCCCTAAACTTTTTGAAA-TTAC
*
51628520 ATTTTTACCCCTAAACTT
1 ATTTTGACCCCTAAACTT
51628538 CATATAAATT
Statistics
Matches: 91, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
29 47 0.52
30 44 0.48
ACGTcount: A:0.32, C:0.22, G:0.04, T:0.43
Consensus pattern (29 bp):
ATTTTGACCCCTAAACTTTTTGAAATTAC
Found at i:51628457 original size:59 final size:59
Alignment explanation
Indices: 51628402--51628537 Score: 209
Period size: 59 Copynumber: 2.3 Consensus size: 59
51628392 AAAAAATCAT
* * *
51628402 ATTTTGACCCCTAAACTTTTTGAAATTATATTTTGACCCCTAAAATTTTTCAAAATTAC
1 ATTTTTACCCCTAAACTTTTTGAAATTACATTTTGACCCCTAAAATTTATCAAAATTAC
* * * *
51628461 ATTTTTACCCTTAACCTTTTTGAAATTACATTTTGACCCCTAAACTTTATCAAACTTAC
1 ATTTTTACCCCTAAACTTTTTGAAATTACATTTTGACCCCTAAAATTTATCAAAATTAC
51628520 ATTTTTACCCCTAAACTT
1 ATTTTTACCCCTAAACTT
51628538 CATATAAATT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
59 68 1.00
ACGTcount: A:0.32, C:0.22, G:0.04, T:0.43
Consensus pattern (59 bp):
ATTTTTACCCCTAAACTTTTTGAAATTACATTTTGACCCCTAAAATTTATCAAAATTAC
Found at i:51628465 original size:30 final size:29
Alignment explanation
Indices: 51628402--51628537 Score: 164
Period size: 30 Copynumber: 4.6 Consensus size: 29
51628392 AAAAAATCAT
* *
51628402 ATTTTGACCCCTAAACTTTTTGAAATTAT
1 ATTTTGACCCCTAAACTTTTTAAAATTAC
*
51628431 ATTTTGACCCCTAAAATTTTTCAAAATTAC
1 ATTTTGACCCCTAAACTTTTT-AAAATTAC
* * * *
51628461 ATTTTTACCCTTAACCTTTTTGAAATTAC
1 ATTTTGACCCCTAAACTTTTTAAAATTAC
* *
51628490 ATTTTGACCCCTAAACTTTATCAAACTTAC
1 ATTTTGACCCCTAAACTTT-TTAAAATTAC
*
51628520 ATTTTTACCCCTAAACTT
1 ATTTTGACCCCTAAACTT
51628538 CATATAAATT
Statistics
Matches: 90, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
29 43 0.48
30 47 0.52
ACGTcount: A:0.32, C:0.22, G:0.04, T:0.43
Consensus pattern (29 bp):
ATTTTGACCCCTAAACTTTTTAAAATTAC
Found at i:51628899 original size:3 final size:3
Alignment explanation
Indices: 51628891--51628921 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
51628881 GCTCGGTTTT
51628891 GAA GAA GAA GAA GAA GAA GAA GAAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA G-AA GAA GAA
51628922 AAAAATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:51629223 original size:7 final size:7
Alignment explanation
Indices: 51629206--51629242 Score: 56
Period size: 7 Copynumber: 5.0 Consensus size: 7
51629196 AAAAGGAAGA
51629206 AAAAGAAG
1 AAAA-AAG
51629214 AAAAAAG
1 AAAAAAG
51629221 AAAAAAAG
1 -AAAAAAG
51629229 AAAAAAG
1 AAAAAAG
51629236 AAAAAAG
1 AAAAAAG
51629243 GAAGAAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 17 0.61
8 11 0.39
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:51629229 original size:15 final size:15
Alignment explanation
Indices: 51629202--51629241 Score: 71
Period size: 15 Copynumber: 2.6 Consensus size: 15
51629192 AAAAAAAAGG
51629202 AAGAAAAAGAAGAAAA
1 AAGAAAAA-AAGAAAA
51629218 AAGAAAAAAAGAAAA
1 AAGAAAAAAAGAAAA
51629233 AAGAAAAAA
1 AAGAAAAAA
51629242 GGAAGAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 16 0.67
16 8 0.33
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (15 bp):
AAGAAAAAAAGAAAA
Found at i:51629253 original size:10 final size:9
Alignment explanation
Indices: 51629190--51629252 Score: 62
Period size: 8 Copynumber: 7.2 Consensus size: 9
51629180 GCAGCCCAGC
*
51629190 AGAAAAAAA
1 AGAAGAAAA
51629199 AGGAAGAAAA
1 A-GAAGAAAA
51629209 AGAAG-AAA
1 AGAAGAAAA
51629217 A-AAGAAAA
1 AGAAGAAAA
51629225 A-AAGAAAAA
1 AGAAG-AAAA
51629234 AGAA-AAAA
1 AGAAGAAAA
*
51629242 GGAAGAAAA
1 AGAAGAAAA
51629251 AG
1 AG
51629253 GGGGTTCAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
7 3 0.07
8 18 0.39
9 15 0.33
10 10 0.22
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (9 bp):
AGAAGAAAA
Found at i:51629865 original size:38 final size:38
Alignment explanation
Indices: 51629791--51629865 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
51629781 GAAATTTTCG
* * * *
51629791 AATTTTCGCGTTTTCAAAAGTTTTCGTGTGTGAAAAAA
1 AATTTTCGCGTTTTAAAAAATTTTCGTATGTCAAAAAA
*
51629829 AATTTTCGCG-TTTAAAAAATTTCTCGTATTTCAAAAA
1 AATTTTCGCGTTTTAAAAAATTT-TCGTATGTCAAAAA
51629866 TTGTCGTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 10 0.32
38 21 0.68
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (38 bp):
AATTTTCGCGTTTTAAAAAATTTTCGTATGTCAAAAAA
Done.