Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 181 of 203
Found at i:57396220 original size:32 final size:31
Alignment explanation
Indices: 57396169--57396368 Score: 190
Period size: 32 Copynumber: 6.3 Consensus size: 31
57396159 GAATGTCTAC
* * * *
57396169 AAGCCATAAGTACAGTAATATGATTGACACA
1 AAGCCATCAGTAGAGTAATATGATCGGCACA
*
57396200 AAGCCATCAGTAGGAGTAATATGACCGGCACA
1 AAGCCATCAGTA-GAGTAATATGATCGGCACA
** * * * *
57396232 CTGCCATCAGTAATAGTAGTATGATCGGTAGA
1 AAGCCATCAGT-AGAGTAATATGATCGGCACA
*
57396264 AAGCCATCAGTAGTAGTAATATGATTGGCACA
1 AAGCCATCAGTAG-AGTAATATGATCGGCACA
57396296 CAA-CCATCAGTA-ATGCTAATATGATCGGCACA
1 -AAGCCATCAGTAGA-G-TAATATGATCGGCACA
*
57396328 CAGCCATCAGTA-ATGGTAATATGATCGGCACA
1 AAGCCATCAGTAGA--GTAATATGATCGGCACA
57396360 AAGCCATCA
1 AAGCCATCA
57396369 TAGCATCACA
Statistics
Matches: 138, Mismatches: 23, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
30 1 0.01
31 14 0.10
32 119 0.86
33 4 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (31 bp):
AAGCCATCAGTAGAGTAATATGATCGGCACA
Found at i:57396272 original size:64 final size:64
Alignment explanation
Indices: 57396184--57396368 Score: 221
Period size: 64 Copynumber: 2.9 Consensus size: 64
57396174 ATAAGTACAG
* * * *
57396184 TAATATGATTGACACAAAGCCATCAGTAGGAGTAATATGACCGGCACACTGCCATCAGTAATAG-
1 TAATATGATCGGCACAAAGCCATCAGTAGGAGTAATATGATCGGCACACAGCCATCAGTAAT-GC
* * * * * *
57396248 TAGTATGATCGGTAGAAAGCCATCAGTAGTAGTAATATGATTGGCACACAACCATCAGTAATGC
1 TAATATGATCGGCACAAAGCCATCAGTAGGAGTAATATGATCGGCACACAGCCATCAGTAATGC
* * *
57396312 TAATATGATCGGCACACAGCCATCAGTAATG-GTAATATGATCGGCACAAAGCCATCA
1 TAATATGATCGGCACAAAGCCATCAGT-AGGAGTAATATGATCGGCACACAGCCATCA
57396369 TAGCATCACA
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
63 1 0.01
64 98 0.98
65 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (64 bp):
TAATATGATCGGCACAAAGCCATCAGTAGGAGTAATATGATCGGCACACAGCCATCAGTAATGC
Found at i:57396351 original size:96 final size:94
Alignment explanation
Indices: 57396169--57396368 Score: 260
Period size: 96 Copynumber: 2.1 Consensus size: 94
57396159 GAATGTCTAC
* *
57396169 AAGCCATAAGTACAGTAATATGATTGACACAAAGCCATCAGTAGGAGTAATATGACCGGCACACT
1 AAGCCATCAGTACAGTAATATGATTGACACAAAGCCATCAGTA-GAGTAATATGACCGGCACACA
* * *
57396234 GCCATCAGTAATAGTAGTATGATCGGTAGA
65 GCCATCAGTAATAGTAATATGATCGGCACA
* * *
57396264 AAGCCATCAGTAGTAGTAATATGATTGGCACACAA-CCATCAGTA-ATGCTAATATGATCGGCAC
1 AAGCCATCAGTA-CAGTAATATGATTGACACA-AAGCCATCAGTAGA-G-TAATATGACCGGCAC
*
57396327 ACAGCCATCAGTAATGGTAATATGATCGGCACA
62 ACAGCCATCAGTAATAGTAATATGATCGGCACA
57396360 AAGCCATCA
1 AAGCCATCA
57396369 TAGCATCACA
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
94 1 0.01
95 12 0.13
96 77 0.84
97 2 0.02
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (94 bp):
AAGCCATCAGTACAGTAATATGATTGACACAAAGCCATCAGTAGAGTAATATGACCGGCACACAG
CCATCAGTAATAGTAATATGATCGGCACA
Found at i:57396406 original size:26 final size:26
Alignment explanation
Indices: 57396377--57396426 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
57396367 CATAGCATCA
57396377 CAGCAAAGCTGCCAACAACAGTATCG
1 CAGCAAAGCTGCCAACAACAGTATCG
**
57396403 CAGCAAAGCTGCCAGTAACAGTAT
1 CAGCAAAGCTGCCAACAACAGTAT
57396427 ATGTAGCCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.38, C:0.28, G:0.20, T:0.14
Consensus pattern (26 bp):
CAGCAAAGCTGCCAACAACAGTATCG
Found at i:57396444 original size:27 final size:27
Alignment explanation
Indices: 57396414--57396473 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 27
57396404 AGCAAAGCTG
57396414 CCAGTAACAGT-ATATGTAGCCA-AGCCA
1 CCAGTAACAGTGAT-TGTAG-CAGAGCCA
57396441 CCAGTAACAGTGATTGTAGCAGAGCCA
1 CCAGTAACAGTGATTGTAGCAGAGCCA
57396468 CCAGTA
1 CCAGTA
57396474 TAGTACTTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
26 2 0.06
27 27 0.87
28 2 0.06
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (27 bp):
CCAGTAACAGTGATTGTAGCAGAGCCA
Found at i:57396680 original size:27 final size:27
Alignment explanation
Indices: 57396650--57397007 Score: 473
Period size: 27 Copynumber: 13.3 Consensus size: 27
57396640 AAATAGTCAC
*
57396650 TTTACCTTACAGGGGCATTACGATCAT
1 TTTACCCTACAGGGGCATTACGATCAT
* *
57396677 TTTACCCTACAGGGGCATTACGGTTAT
1 TTTACCCTACAGGGGCATTACGATCAT
* * *
57396704 TTTACCCTATAGGAGCATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGATCAT
* *
57396731 TTTACCTTACAGAGGCATTACGATCAT
1 TTTACCCTACAGGGGCATTACGATCAT
* *
57396758 TTTACCCTACTGGGGCATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGATCAT
* *
57396785 TTTACCCTACAAGGGCATTACAATCAT
1 TTTACCCTACAGGGGCATTACGATCAT
* * * *
57396812 TTTACTCTACAGGGGCATTATGGTAAT
1 TTTACCCTACAGGGGCATTACGATCAT
* *
57396839 TTTACCCTACAGGGGCATTATGGTCAT
1 TTTACCCTACAGGGGCATTACGATCAT
* * *
57396866 TTTACACTATAGGGGCATTACGACCAT
1 TTTACCCTACAGGGGCATTACGATCAT
57396893 TTTACCCTACAGGGGCATTACGATCAT
1 TTTACCCTACAGGGGCATTACGATCAT
57396920 TTTACCCTACAGGGGCATTACGATCAT
1 TTTACCCTACAGGGGCATTACGATCAT
*
57396947 TTTACCCTACAGGGGCATTACGGTCAT
1 TTTACCCTACAGGGGCATTACGATCAT
* * * *
57396974 TTCACCATACAGGGGAATTACGACCAT
1 TTTACCCTACAGGGGCATTACGATCAT
*
57397001 CTTACCC
1 TTTACCC
57397008 ATCGAGGGTA
Statistics
Matches: 287, Mismatches: 44, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 287 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (27 bp):
TTTACCCTACAGGGGCATTACGATCAT
Found at i:57397039 original size:27 final size:27
Alignment explanation
Indices: 57397009--57397095 Score: 138
Period size: 27 Copynumber: 3.2 Consensus size: 27
57396999 ATCTTACCCA
* *
57397009 TCGAGGGTATTTCGGTCATTTTACCAT
1 TCGAGGGTATTTCGATAATTTTACCAT
*
57397036 TCGAGGGTATTTCGATTATTTTACCAT
1 TCGAGGGTATTTCGATAATTTTACCAT
*
57397063 TCGAGGGTATTTCGATAATTTTACCCT
1 TCGAGGGTATTTCGATAATTTTACCAT
57397090 TCGAGG
1 TCGAGG
57397096 TTACTTCAGC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (27 bp):
TCGAGGGTATTTCGATAATTTTACCAT
Found at i:57400041 original size:100 final size:100
Alignment explanation
Indices: 57399868--57400091 Score: 412
Period size: 100 Copynumber: 2.2 Consensus size: 100
57399858 CCACTAAATT
*
57399868 GGCACAGCATATTGTCTGATGCATATTGTCTGGTTTCCATTCAAACTAGGTTGCCTCAATATCTG
1 GGCACAGCATATTGTCTGATGCATATTGTCTGGTTTCAATTCAAACTAGGTTGCCTCAATATCTG
57399933 GCTTTCTAATTCCTAGGTTTAACTCACTGAAAAGA
66 GCTTTCTAATTCCTAGGTTTAACTCACTGAAAAGA
*
57399968 GGCACAGCATATTGTCTGATGCATATTGTCTGGTTTCAATTCAAACTAGGTTGCCTCATTATCTG
1 GGCACAGCATATTGTCTGATGCATATTGTCTGGTTTCAATTCAAACTAGGTTGCCTCAATATCTG
* *
57400033 GCTTTCTAATTCCTGGGTTTAACTCACTGAAAAGT
66 GCTTTCTAATTCCTAGGTTTAACTCACTGAAAAGA
57400068 GGCACAGCATATTGTCTGATGCAT
1 GGCACAGCATATTGTCTGATGCAT
57400092 CGATCCCTAT
Statistics
Matches: 120, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 120 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (100 bp):
GGCACAGCATATTGTCTGATGCATATTGTCTGGTTTCAATTCAAACTAGGTTGCCTCAATATCTG
GCTTTCTAATTCCTAGGTTTAACTCACTGAAAAGA
Found at i:57404463 original size:33 final size:33
Alignment explanation
Indices: 57404426--57404495 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
57404416 AAGAGATAAT
* *
57404426 GATGCTTGAGGGATGATTAAAGAATGGTTGTGG
1 GATGCTTGAGGGACGATTAAAGAATGATTGTGG
57404459 GATGCTTGAGGGACGATTAAAGAATGATTGTGG
1 GATGCTTGAGGGACGATTAAAGAATGATTGTGG
57404492 GATG
1 GATG
57404496 TTTGTGGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.04, G:0.39, T:0.29
Consensus pattern (33 bp):
GATGCTTGAGGGACGATTAAAGAATGATTGTGG
Found at i:57415798 original size:21 final size:21
Alignment explanation
Indices: 57415773--57415813 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
57415763 GCTATTTTGC
* *
57415773 TGCTGTAGAAGAGGAAGTTGT
1 TGCTGAAGAAGAAGAAGTTGT
57415794 TGCTGAAGAAGAAGAAGTTG
1 TGCTGAAGAAGAAGAAGTTG
57415814 CTGAAAATGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.05, G:0.37, T:0.24
Consensus pattern (21 bp):
TGCTGAAGAAGAAGAAGTTGT
Found at i:57423093 original size:21 final size:21
Alignment explanation
Indices: 57423069--57423119 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 21
57423059 TCCCTTTCAG
57423069 CAACTTCTTCTTCCT-CAACGA-
1 CAACTTCTTCTT-CTGCAAC-AT
57423090 CAACTTCTTCTTCTGCAACAT
1 CAACTTCTTCTTCTGCAACAT
57423111 CAACTTCTT
1 CAACTTCTT
57423120 TCTCAACAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 3 0.11
21 25 0.89
ACGTcount: A:0.24, C:0.35, G:0.04, T:0.37
Consensus pattern (21 bp):
CAACTTCTTCTTCTGCAACAT
Found at i:57423098 original size:18 final size:18
Alignment explanation
Indices: 57423075--57423127 Score: 54
Period size: 21 Copynumber: 2.8 Consensus size: 18
57423065 TCAGCAACTT
57423075 CTTCTTCCTCAACGA-CAA
1 CTTCTTCCTCAAC-ATCAA
57423093 CTTCTTCTTCTGCAACATCAA
1 CTTCTTC--CT-CAACATCAA
*
57423114 CTTCTTTCTCAACA
1 CTTCTTCCTCAACA
57423128 ACAGTGTCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
18 12 0.40
19 2 0.07
20 3 0.10
21 13 0.43
ACGTcount: A:0.25, C:0.36, G:0.04, T:0.36
Consensus pattern (18 bp):
CTTCTTCCTCAACATCAA
Found at i:57431133 original size:27 final size:27
Alignment explanation
Indices: 57431092--57431454 Score: 347
Period size: 27 Copynumber: 13.4 Consensus size: 27
57431082 AATGGGCCTC
*
57431092 TAAAATTACCGAAATACCCTCAACT-GG
1 TAAAATTACCGAAATACCCTCGA-TGGG
* *
57431119 TAAAATTACCAAAATACCCTTGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
*
57431146 TAAAATTATCGAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
*
57431173 TAAAATTACTGAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
*
57431200 TAAAATTACCAAAATACCCTCG-TCGGG
1 TAAAATTACCGAAATACCCTCGAT-GGG
* ** *
57431227 TAAAATAACTAAAATACCCTCGATCGG
1 TAAAATTACCGAAATACCCTCGATGGG
* ** *
57431254 TAAAATAATTGAAATACCCGT-GAAGGG
1 TAAAATTACCGAAATACCC-TCGATGGG
* **
57431281 TAAAATTATCGAAATACCCTTAATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
* *
57431308 TAAAATTATCGAAATACCCCCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
* * * ***
57431335 TAAAAATTACTGAAATACCTTTGACAAG
1 T-AAAATTACCGAAATACCCTCGATGGG
* *
57431363 TAAAATTACCGAAATACCCCCGAAGGG
1 TAAAATTACCGAAATACCCTCGATGGG
* *
57431390 TAAAATGACCGAAAGACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
* * * *
57431417 CAAAATTGCTGAAATACCCT-TATAGGG
1 TAAAATTACCGAAATACCCTCGAT-GGG
*
57431444 TAAAATGACCG
1 TAAAATTACCG
57431455 TTATACCCCT
Statistics
Matches: 276, Mismatches: 53, Indels: 14
0.80 0.15 0.04
Matches are distributed among these distances:
26 5 0.02
27 250 0.91
28 21 0.08
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGATGGG
Found at i:57431685 original size:26 final size:26
Alignment explanation
Indices: 57431651--57431747 Score: 70
Period size: 26 Copynumber: 3.7 Consensus size: 26
57431641 CAAATTCTAT
*
57431651 TACTGGCAGCTTTGCTGCGTTACTGA
1 TACTAGCAGCTTTGCTGCGTTACTGA
* ** * * *
57431677 TACTAGCAGCTCTATTGCATTGCTGT
1 TACTAGCAGCTTTGCTGCGTTACTGA
* * *
57431703 TACTGGCACCTTTGCTGCTTTACT-A
1 TACTAGCAGCTTTGCTGCGTTACTGA
* *
57431728 TTACTAACAACTTTGCTGCG
1 -TACTAGCAGCTTTGCTGCG
57431748 ATATTAGTGT
Statistics
Matches: 51, Mismatches: 19, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.37
Consensus pattern (26 bp):
TACTAGCAGCTTTGCTGCGTTACTGA
Found at i:57431891 original size:30 final size:30
Alignment explanation
Indices: 57431854--57431940 Score: 111
Period size: 30 Copynumber: 2.9 Consensus size: 30
57431844 CTGCATTTGG
*
57431854 ACTGTTACGGTATTGGGCTAAGGCCCACAC
1 ACTGTTACTGTATTGGGCTAAGGCCCACAC
* *
57431884 TCTGTTACTGTATTGGGCTATGGCCCACAC
1 ACTGTTACTGTATTGGGCTAAGGCCCACAC
** * *
57431914 ACTACTACTGTATAGGGCTCAGGCCCA
1 ACTGTTACTGTATTGGGCTAAGGCCCA
57431941 GACTGATTCT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (30 bp):
ACTGTTACTGTATTGGGCTAAGGCCCACAC
Found at i:57432203 original size:14 final size:15
Alignment explanation
Indices: 57432174--57432204 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
57432164 TGGTTTTAAA
57432174 TTTTAATTGAGTTTT
1 TTTTAATTGAGTTTT
57432189 TTTTAATTGAGTTTT
1 TTTTAATTGAGTTTT
57432204 T
1 T
57432205 ACTTTCATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.13, T:0.68
Consensus pattern (15 bp):
TTTTAATTGAGTTTT
Found at i:57454869 original size:3 final size:3
Alignment explanation
Indices: 57454861--57454902 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
57454851 AAAGAAAAGG
57454861 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
57454903 TATCTTAATG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:57455804 original size:4 final size:5
Alignment explanation
Indices: 57455794--57455823 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
57455784 GAGAAGAGAG
57455794 AGAAA AG-AA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA A
57455824 ATAATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:57482171 original size:19 final size:20
Alignment explanation
Indices: 57482121--57482168 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
57482111 ATGAAGTAGG
57482121 TGAAAAAAACATGGCTTTGA
1 TGAAAAAAACATGGCTTTGA
57482141 TGAAAAAAACATGGCTTTGA
1 TGAAAAAAACATGGCTTTGA
57482161 TGGAAAAA
1 T-GAAAAA
57482169 CATTCCGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 21 0.78
21 6 0.22
ACGTcount: A:0.48, C:0.08, G:0.21, T:0.23
Consensus pattern (20 bp):
TGAAAAAAACATGGCTTTGA
Found at i:57483453 original size:50 final size:50
Alignment explanation
Indices: 57483398--57483521 Score: 140
Period size: 50 Copynumber: 2.5 Consensus size: 50
57483388 GATTGAGATT
* * * * *
57483398 ATGAGAGGTCCCATGTAAGACCATGTTTGGGACATCGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATCGCATGGGAACCGAG
** * * *
57483448 ATGAGAGGTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGAACTGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATCGCATGGGAACCGAG
**
57483498 ATGAGAACTCCCATGTAAGACCAT
1 ATGAGAGGTCCCATGTAAGACCAT
57483522 ATCTGGGATA
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATCGCATGGGAACCGAG
Found at i:57490260 original size:50 final size:50
Alignment explanation
Indices: 57490157--57490349 Score: 179
Period size: 50 Copynumber: 3.7 Consensus size: 50
57490147 AGGAATGAGA
* *
57490157 TCCCATGTAAGAACATGTCTGGGACATGGCATTGGCATCATAGAGATTATGAGAGT
1 TCCCATGTAAGAACATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGC
* * * * *
57490213 TTCTATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGAACATGTCTGGGACATGGCATTGGCACCGAGATGAGAGC
** * * * *
57490263 TCCCCCGTAAGAACATGTGTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGAACATGTCTGGGACATGGCATTGGCACCGAGATGAGAGC
* * * *
57490313 TCCCATGTAAGACCATATTTGGGATATGGCATTGGCA
1 TCCCATGTAAGAACATGTCTGGGACATGGCATTGGCA
57490350 GTACAAACAA
Statistics
Matches: 113, Mismatches: 24, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
50 76 0.67
53 3 0.03
55 1 0.01
56 33 0.29
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGAACATGTCTGGGACATGGCATTGGCACCGAGATGAGAGC
Found at i:57508348 original size:27 final size:28
Alignment explanation
Indices: 57508307--57508370 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 28
57508297 TACAAATATG
*
57508307 TTTGGTGAA-ATATGTTTGCAGATGTGT
1 TTTGGTGAACATATGTTTGCAGATGTAT
57508334 TTTGGTGAACA-ATGTTTGCAGATGTAT
1 TTTGGTGAACATATGTTTGCAGATGTAT
*
57508361 TTTGGCGAAC
1 TTTGGTGAAC
57508371 TAAGTTCATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.23, C:0.08, G:0.28, T:0.41
Consensus pattern (28 bp):
TTTGGTGAACATATGTTTGCAGATGTAT
Found at i:57518046 original size:25 final size:25
Alignment explanation
Indices: 57517996--57518063 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
57517986 GATAGAAAGG
*
57517996 AAAGAGAAGAAAAGAAAATGGAGAA
1 AAAGAGAAGAAAAGAAAATAGAGAA
* * *
57518021 AAAGAGAGGAAAAGGAAATTAGGAAAA
1 AAAGAGAAGAAAA-GAAAATA-GAGAA
57518048 ATAAGAGAA-AAAAGAA
1 A-AAGAGAAGAAAAGAA
57518064 GAGGACAACG
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
25 12 0.34
26 8 0.23
27 9 0.26
28 6 0.17
ACGTcount: A:0.68, C:0.00, G:0.26, T:0.06
Consensus pattern (25 bp):
AAAGAGAAGAAAAGAAAATAGAGAA
Found at i:57530423 original size:13 final size:14
Alignment explanation
Indices: 57530398--57530426 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
57530388 GAAAAGATGG
57530398 TAATTATTAATATA
1 TAATTATTAATATA
57530412 TAATTA-TAATATA
1 TAATTATTAATATA
57530425 TA
1 TA
57530427 TTAATTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TAATTATTAATATA
Found at i:57534938 original size:95 final size:95
Alignment explanation
Indices: 57534775--57534992 Score: 427
Period size: 95 Copynumber: 2.3 Consensus size: 95
57534765 TTAAATCGAG
*
57534775 TTAATTGTTTGAATTGACATAGGGATATGTAAAATATATTATTTCAATTTAATAAGTATGTATGT
1 TTAATTGGTTGAATTGACATAGGGATATGTAAAATATATTATTTCAATTTAATAAGTATGTATGT
57534840 GCAATAACATATTTGCCTATTAAGATTTGT
66 GCAATAACATATTTGCCTATTAAGATTTGT
57534870 TTAATTGGTTGAATTGACATAGGGATATGTAAAATATATTATTTCAATTTAATAAGTATGTATGT
1 TTAATTGGTTGAATTGACATAGGGATATGTAAAATATATTATTTCAATTTAATAAGTATGTATGT
57534935 GCAATAACATATTTGCCTATTAAGATTTGT
66 GCAATAACATATTTGCCTATTAAGATTTGT
57534965 TTAATTGGTTGAATTGACATAGGGATAT
1 TTAATTGGTTGAATTGACATAGGGATAT
57534993 AGTCAAGAGT
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 122 1.00
ACGTcount: A:0.35, C:0.06, G:0.17, T:0.42
Consensus pattern (95 bp):
TTAATTGGTTGAATTGACATAGGGATATGTAAAATATATTATTTCAATTTAATAAGTATGTATGT
GCAATAACATATTTGCCTATTAAGATTTGT
Found at i:57535768 original size:33 final size:35
Alignment explanation
Indices: 57535731--57535798 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 35
57535721 AAAATTTTGA
* *
57535731 CACTG-TACTGAGATGGGCTAAGGCCCAA-ACTGT
1 CACTGATACTGAAATGGCCTAAGGCCCAAGACTGT
* *
57535764 CACTGATACTGAAATGGCCTTAGGCCTAAGACTGT
1 CACTGATACTGAAATGGCCTAAGGCCCAAGACTGT
57535799 TCAACTGTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 5 0.17
34 19 0.66
35 5 0.17
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (35 bp):
CACTGATACTGAAATGGCCTAAGGCCCAAGACTGT
Found at i:57536558 original size:26 final size:26
Alignment explanation
Indices: 57536507--57536558 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
57536497 CTTGTAAGTG
*
57536507 TTCTGAAACTGATACATGCTATGATA
1 TTCTGAAACTGATACATGCTACGATA
* *
57536533 TTCTGAAACTGATATATGTTACGATA
1 TTCTGAAACTGATACATGCTACGATA
57536559 GTATGAAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (26 bp):
TTCTGAAACTGATACATGCTACGATA
Found at i:57536565 original size:26 final size:26
Alignment explanation
Indices: 57536510--57536566 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
57536500 GTAAGTGTTC
* * *
57536510 TGAAACTGATACATGCTATGATATTC
1 TGAAACTGATACATGCTACGATAGTA
* *
57536536 TGAAACTGATATATGTTACGATAGTA
1 TGAAACTGATACATGCTACGATAGTA
57536562 TGAAA
1 TGAAA
57536567 GTACTGTAGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.33
Consensus pattern (26 bp):
TGAAACTGATACATGCTACGATAGTA
Found at i:57543514 original size:34 final size:34
Alignment explanation
Indices: 57543462--57543529 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
57543452 ATATTTTTGA
* *
57543462 CACTATACTGAGATGGGCTAAAGCCCAA-ACTAT
1 CACTATACTGAAAAGGGCTAAAGCCCAAGACTAT
* *
57543495 CACTGATACTGAAAAGGGCTTAGGCCCAAGACTAT
1 CACT-ATACTGAAAAGGGCTAAAGCCCAAGACTAT
57543530 TTAACTGTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 4 0.14
34 20 0.69
35 5 0.17
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.21
Consensus pattern (34 bp):
CACTATACTGAAAAGGGCTAAAGCCCAAGACTAT
Found at i:57550961 original size:12 final size:12
Alignment explanation
Indices: 57550944--57550970 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
57550934 ATTCCGAAGT
57550944 ATATATATATAC
1 ATATATATATAC
57550956 ATATATATATAC
1 ATATATATATAC
57550968 ATA
1 ATA
57550971 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:57551485 original size:27 final size:27
Alignment explanation
Indices: 57551454--57551631 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
57551444 TAAATTGTAC
57551454 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
57551481 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57551507 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
57551535 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
57551563 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
57551590 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
57551617 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
57551632 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:57551568 original size:82 final size:81
Alignment explanation
Indices: 57551455--57551610 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
57551445 AAATTGTACA
* *
57551455 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
57551519 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
57551536 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
57551601 TGCGAGTTGA
65 TGCGAATTGA
57551611 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:57551622 original size:82 final size:81
Alignment explanation
Indices: 57551451--57551631 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
57551441 GATTAAATTG
* *
57551451 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
57551516 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
57551532 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
57551596 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
57551614 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
57551632 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:57569543 original size:24 final size:24
Alignment explanation
Indices: 57569495--57569541 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
57569485 ACTGGTCATA
* *
57569495 GAGAGATTTGAGGAGGGATATTTG
1 GAGAGATTTGAAGAGGAATATTTG
57569519 GAGAGATTTGAAGAGAGAATATT
1 GAGAGATTTGAAGAG-GAATATT
57569542 GGGATTTAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.28
Consensus pattern (24 bp):
GAGAGATTTGAAGAGGAATATTTG
Found at i:57570179 original size:27 final size:27
Alignment explanation
Indices: 57570149--57570530 Score: 369
Period size: 27 Copynumber: 14.2 Consensus size: 27
57570139 TTACACTGTT
* *
57570149 ATGACCAAAATACCTCCAAAGGGTAAA
1 ATGACCGAAATACCCCCAAAGGGTAAA
* * *
57570176 ATGACTGAAATACCCCCATAGGGTAGA
1 ATGACCGAAATACCCCCAAAGGGTAAA
57570203 ATGACCGAAA-ACCCCCATAA-GGTAAA
1 ATGACCGAAATACCCCCA-AAGGGTAAA
* *
57570229 ATAACCGAAATACCCCCACAGGGTAAA
1 ATGACCGAAATACCCCCAAAGGGTAAA
* * * *
57570256 ATGAGCAAAATAACCCCATAGGGTAAA
1 ATGACCGAAATACCCCCAAAGGGTAAA
* * *
57570283 ATGAGCAAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCAAAGGGTAAA
* * * *
57570310 ATGAACGAAATGCCCCTAGAGGGTAAA
1 ATGACCGAAATACCCCCAAAGGGTAAA
* * ** *
57570337 ATAAGCGAAATACCCCCTTAGTGTAAA
1 ATGACCGAAATACCCCCAAAGGGTAAA
*
57570364 ATGAGCGAAATACCCCCATAA-GGTAAA
1 ATGACCGAAATACCCCCA-AAGGGTAAA
* * *
57570391 CTGACCGAATTACCCCCACAGGGTAAA
1 ATGACCGAAATACCCCCAAAGGGTAAA
* * *
57570418 ATGATCAAAATACCCTCACAA-GGTAAA
1 ATGACCGAAATACCCCCA-AAGGGTAAA
* * *
57570445 ATGACCGAACTACCCCCATAGGGTAGA
1 ATGACCGAAATACCCCCAAAGGGTAAA
* *
57570472 ATGATCAAAATACCCCCATAA-GGTAAA
1 ATGACCGAAATACCCCCA-AAGGGTAAA
*
57570499 ATGACCGAAATACCCCCAAAAGGTAAA
1 ATGACCGAAATACCCCCAAAGGGTAAA
57570526 ATGAC
1 ATGAC
57570531 TATTATACCC
Statistics
Matches: 291, Mismatches: 55, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
26 26 0.09
27 262 0.90
28 3 0.01
ACGTcount: A:0.43, C:0.24, G:0.17, T:0.15
Consensus pattern (27 bp):
ATGACCGAAATACCCCCAAAGGGTAAA
Found at i:57570333 original size:81 final size:81
Alignment explanation
Indices: 57570156--57570530 Score: 414
Period size: 81 Copynumber: 4.6 Consensus size: 81
57570146 GTTATGACCA
* * *
57570156 AAATACCTCCAAAGGGTAAAATGA-CTGAAATACCCCCATAGGGTAGAATGACCGAAA-ACCCCC
1 AAATACCCCCACAGGGTAAAATGAGC-GAAATACCCCCATAGGGTAAAATGACCGAAATACCCCC
57570219 ATAAGGTAAAAT-AACCG
65 ATAAGGTAAAATGAA-CG
* * * *
57570236 AAATACCCCCACAGGGTAAAATGAGCAAAATAACCCCATAGGGTAAAATGAGCAAAATACCCCCA
1 AAATACCCCCACAGGGTAAAATGAGCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCA
*
57570301 TAGGGTAAAATGAACG
66 TAAGGTAAAATGAACG
* * * * * * *
57570317 AAATGCCCCTAGAGGGTAAAATAAGCGAAATACCCCCTTAGTGTAAAATGAGCGAAATACCCCCA
1 AAATACCCCCACAGGGTAAAATGAGCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCA
* *
57570382 TAAGGTAAACTGACCG
66 TAAGGTAAAATGAACG
* * * * * * *
57570398 AATTACCCCCACAGGGTAAAATGATCAAAATACCCTCACAAGGTAAAATGACCGAACTACCCCCA
1 AAATACCCCCACAGGGTAAAATGAGCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCA
* * * *
57570463 TAGGGTAGAATGATCA
66 TAAGGTAAAATGAACG
* * * * *
57570479 AAATACCCCCATAAGGTAAAATGACCGAAATACCCCCAAAAGGTAAAATGAC
1 AAATACCCCCACAGGGTAAAATGAGCGAAATACCCCCATAGGGTAAAATGAC
57570531 TATTATACCC
Statistics
Matches: 246, Mismatches: 46, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
80 48 0.20
81 196 0.80
82 2 0.01
ACGTcount: A:0.43, C:0.24, G:0.17, T:0.15
Consensus pattern (81 bp):
AAATACCCCCACAGGGTAAAATGAGCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCA
TAAGGTAAAATGAACG
Found at i:57570541 original size:54 final size:53
Alignment explanation
Indices: 57570156--57570530 Score: 412
Period size: 54 Copynumber: 7.0 Consensus size: 53
57570146 GTTATGACCA
* * *
57570156 AAATACCTCCA-AAGGGTAAAATGACTGAAATACCCCCATAGGGTAGAATGACCG
1 AAATACCCCCATAA-GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA-CG
* * *
57570210 AAA-ACCCCCATAAGGTAAAATAACCGAAATACCCCCACAGGGTAAAATGAGCA
1 AAATACCCCCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA-CG
* * * *
57570263 AAATAACCCCATAGGGTAAAATGAGCAAAATACCCCCATAGGGTAAAATGAACG
1 AAATACCCCCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATG-ACG
* * * * * * * *
57570317 AAATGCCCCTAGAGGGTAAAATAAGCGAAATACCCCCTTAGTGTAAAATGAGCG
1 AAATACCCCCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA-CG
* * * *
57570371 AAATACCCCCATAAGGTAAACTGACCGAATTACCCCCACAGGGTAAAATGATCA
1 AAATACCCCCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA-CG
* * * * *
57570425 AAATACCCTCACAAGGTAAAATGACCGAACTACCCCCATAGGGTAGAATGATCA
1 AAATACCCCCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA-CG
* *
57570479 AAATACCCCCATAAGGTAAAATGACCGAAATACCCCCAAAAGGTAAAATGAC
1 AAATACCCCCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAC
57570531 TATTATACCC
Statistics
Matches: 270, Mismatches: 47, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
53 45 0.17
54 224 0.83
55 1 0.00
ACGTcount: A:0.43, C:0.24, G:0.17, T:0.15
Consensus pattern (53 bp):
AAATACCCCCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACG
Found at i:57573157 original size:27 final size:27
Alignment explanation
Indices: 57573126--57573587 Score: 401
Period size: 27 Copynumber: 17.2 Consensus size: 27
57573116 TTTACACTGT
* *
57573126 AATGACCAAAATACCCCCATAAGGTTA
1 AATGACCGAAATACCCCCATAAGGTAA
** * *
57573153 AATGACTAAAATACCCCCATAGGGTAG
1 AATGACCGAAATACCCCCATAAGGTAA
* * *
57573180 AATGACTGAAATACCCTCATAAGATAA
1 AATGACCGAAATACCCCCATAAGGTAA
* * * *
57573207 AATGACCGGAATAACCCCACAGGGTAA
1 AATGACCGAAATACCCCCATAAGGTAA
* * * *
57573234 AATGACCGAAATGCCCCCACATGGTAG
1 AATGACCGAAATACCCCCATAAGGTAA
* * *
57573261 AATGACCGGAATAACCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAAGGTAA
* * *
57573288 AATGACCAAAATA-CCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAAGGTAA
* * * *
57573314 AATGATC-ATTATACCCTCATAAGATAA
1 AATGACCGA-AATACCCCCATAAGGTAA
* * * *
57573341 AATGACCGGAATAACCCCACAGGGTAA
1 AATGACCGAAATACCCCCATAAGGTAA
*
57573368 AATGACCGAAATACCCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAAGGTAA
** * *
57573395 AATGATTGAAATACTCCCATAAGGTAG
1 AATGACCGAAATACCCCCATAAGGTAA
* *
57573422 AATG-CTCAAAATACCCCCATAGGGTAA
1 AATGAC-CGAAATACCCCCATAAGGTAA
* * *
57573449 AATGATCGAAATACCCCCACAAGGTAG
1 AATGACCGAAATACCCCCATAAGGTAA
* * *
57573476 AATGACTGGAATAACCCCATAAGGTAA
1 AATGACCGAAATACCCCCATAAGGTAA
* * * *
57573503 AATGACTGAAATACCCCCACAGGGTAG
1 AATGACCGAAATACCCCCATAAGGTAA
* * *
57573530 AATGACCGGAATAACCCCATAGGGTAA
1 AATGACCGAAATACCCCCATAAGGTAA
* *
57573557 AATGACCGAAATA-CCCTATAGGGTAA
1 AATGACCGAAATACCCCCATAAGGTAA
57573583 AATGA
1 AATGA
57573588 TCGTTATACC
Statistics
Matches: 349, Mismatches: 81, Indels: 11
0.79 0.18 0.02
Matches are distributed among these distances:
25 1 0.00
26 38 0.11
27 310 0.89
ACGTcount: A:0.42, C:0.23, G:0.18, T:0.18
Consensus pattern (27 bp):
AATGACCGAAATACCCCCATAAGGTAA
Found at i:57574014 original size:28 final size:28
Alignment explanation
Indices: 57573983--57574073 Score: 130
Period size: 28 Copynumber: 3.3 Consensus size: 28
57573973 TGTATTAGGT
* *
57573983 TAAGGCTCACACTGATACTGTATTGGGC
1 TAAGGCCCACACTGATACTGAATTGGGC
*
57574011 TAAGGCCCACACTAATACTGAATTGGGC
1 TAAGGCCCACACTGATACTGAATTGGGC
* *
57574039 TAAGGCCCACACCGCTACTGAATTGGG-
1 TAAGGCCCACACTGATACTGAATTGGGC
57574066 TAAGGCCC
1 TAAGGCCC
57574074 TTATTGTACT
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 8 0.14
28 49 0.86
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.22
Consensus pattern (28 bp):
TAAGGCCCACACTGATACTGAATTGGGC
Found at i:57576447 original size:27 final size:27
Alignment explanation
Indices: 57576228--57576450 Score: 224
Period size: 27 Copynumber: 8.4 Consensus size: 27
57576218 GTTATGACCA
*
57576228 AAATACCTCTATAGGGTAAAATGACTG
1 AAATACCCCTATAGGGTAAAATGACTG
*
57576255 AAATACCGCC-ATAGGGTAGAATGACTG
1 AAATACC-CCTATAGGGTAAAATGACTG
* * *
57576282 AAATACCCCCATAAGGTAAAATGACCG
1 AAATACCCCTATAGGGTAAAATGACTG
*
57576309 AAATA-CCCTA-GGGGTAAAATGACTG
1 AAATACCCCTATAGGGTAAAATGACTG
* * **
57576334 AAGTACCCC-ATAGGGTAAAATAACCA
1 AAATACCCCTATAGGGTAAAATGACTG
* *
57576360 AAATAACCC-ATAGGGTAGAATGA-TCG
1 AAATACCCCTATAGGGTAAAATGACT-G
* *
57576386 AAATACCCCAATTGGGTAAAATGACTG
1 AAATACCCCTATAGGGTAAAATGACTG
* *
57576413 AAACACCCCTATAGGGTAAAATGATTG
1 AAATACCCCTATAGGGTAAAATGACTG
**
57576440 TTATACCCCTA
1 AAATACCCCTA
57576451 GGAGATGAAA
Statistics
Matches: 159, Mismatches: 30, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
25 17 0.11
26 47 0.30
27 93 0.58
28 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.21
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAAAATGACTG
Found at i:57576925 original size:28 final size:28
Alignment explanation
Indices: 57576831--57576938 Score: 119
Period size: 28 Copynumber: 3.9 Consensus size: 28
57576821 TGTACTGTAA
* *
57576831 TGTTACTGTATTGGGCAAAGGCCCACAC
1 TGTTACTGAATTGGGCTAAGGCCCACAC
** * * * *
57576859 TAATACTGTATTGGTCTAGGGCCCACAT
1 TGTTACTGAATTGGGCTAAGGCCCACAC
*
57576887 TGATT-CCGAATTGGGCTAAGGCCCACAC
1 TG-TTACTGAATTGGGCTAAGGCCCACAC
57576915 TGTTACTGAATTGGGCTAAGGCCC
1 TGTTACTGAATTGGGCTAAGGCCC
57576939 TCATTATACT
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
27 2 0.03
28 61 0.95
29 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (28 bp):
TGTTACTGAATTGGGCTAAGGCCCACAC
Found at i:57578438 original size:27 final size:27
Alignment explanation
Indices: 57578406--57578620 Score: 177
Period size: 27 Copynumber: 8.0 Consensus size: 27
57578396 TGTTATGACA
* * *
57578406 AAATACCTCAATGGGGTAAATTGACTG
1 AAATACCTCTATAGGGTAAAATGACTG
*** * *
57578433 AAATACACTC-ATACAATAGAATGACCG
1 AAATAC-CTCTATAGGGTAAAATGACTG
*
57578460 AAATACTTCTATAGGGTAAAATGA-TCG
1 AAATACCTCTATAGGGTAAAATGACT-G
* * *
57578487 AAATACCCCCACAGGGTAAAATGACTG
1 AAATACCTCTATAGGGTAAAATGACTG
* **
57578514 AAATACCCCTATAGGGTAAAATGACCA
1 AAATACCTCTATAGGGTAAAATGACTG
* *
57578541 AAATACC-CTCATAGGGTAGAATGACCG
1 AAATACCTCT-ATAGGGTAAAATGACTG
* * *
57578568 AAATATCC-CAATTGGGTAAAATGATTG
1 AAATA-CCTCTATAGGGTAAAATGACTG
*
57578595 AAATACCCCTATAGGGTAAAATGACT
1 AAATACCTCTATAGGGTAAAATGACT
57578621 ATTATACCCC
Statistics
Matches: 150, Mismatches: 31, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
26 6 0.04
27 137 0.91
28 7 0.05
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (27 bp):
AAATACCTCTATAGGGTAAAATGACTG
Found at i:57578490 original size:54 final size:54
Alignment explanation
Indices: 57578449--57578619 Score: 202
Period size: 54 Copynumber: 3.2 Consensus size: 54
57578439 ACTCATACAA
* * *
57578449 TAGAATGACCGAAATACTTCTATAGGGTAAAATGATCGAAATACCCCCACAGGG
1 TAGAATGACCGAAATACTCCTATAGGGTAAAATGATCGAAATACCCTCATAGGG
* * * * *
57578503 TAAAATGACTGAAATACCCCTATAGGGTAAAATGACCAAAATACCCTCATAGGG
1 TAGAATGACCGAAATACTCCTATAGGGTAAAATGATCGAAATACCCTCATAGGG
* * *
57578557 TAGAATGACCGAAATA-TCCCAATTGGGTAAAATGATTGAAATACCC-CTATAGGG
1 TAGAATGACCGAAATACT-CCTATAGGGTAAAATGATCGAAATACCCTC-ATAGGG
*
57578611 TAAAATGAC
1 TAGAATGAC
57578620 TATTATACCC
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 97 0.99
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (54 bp):
TAGAATGACCGAAATACTCCTATAGGGTAAAATGATCGAAATACCCTCATAGGG
Found at i:57578629 original size:81 final size:81
Alignment explanation
Indices: 57578452--57578619 Score: 239
Period size: 81 Copynumber: 2.1 Consensus size: 81
57578442 CATACAATAG
* * * *
57578452 AATGACCGAAATA-CTTCTATAGGGTAAAATGATCGAAATACCCCCACAGGGTAAAATGACTGAA
1 AATGACCAAAATACCCTC-ATAGGGTAAAATGACCGAAATACCCCAACAGGGTAAAATGACTGAA
57578516 ATACCCCTATAGGGTAA
65 ATACCCCTATAGGGTAA
* * ** *
57578533 AATGACCAAAATACCCTCATAGGGTAGAATGACCGAAATATCCCAATTGGGTAAAATGATTGAAA
1 AATGACCAAAATACCCTCATAGGGTAAAATGACCGAAATACCCCAACAGGGTAAAATGACTGAAA
57578598 TACCCCTATAGGGTAA
66 TACCCCTATAGGGTAA
57578614 AATGAC
1 AATGAC
57578620 TATTATACCC
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 74 0.96
82 3 0.04
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.21
Consensus pattern (81 bp):
AATGACCAAAATACCCTCATAGGGTAAAATGACCGAAATACCCCAACAGGGTAAAATGACTGAAA
TACCCCTATAGGGTAA
Found at i:57579056 original size:28 final size:28
Alignment explanation
Indices: 57579016--57579117 Score: 116
Period size: 28 Copynumber: 3.6 Consensus size: 28
57579006 ACTGTAATGT
* *
57579016 TATTGTATTGGGCTTAGGCCCGCACTGA
1 TATTGTATTGGGCTAAGGCCCACACTGA
57579044 TATTGTATTGGGCTAAGGCCCACACTGA
1 TATTGTATTGGGCTAAGGCCCACACTGA
* * * *
57579072 TACTGAATTGGGCTAAAGCCCACA-TTA
1 TATTGTATTGGGCTAAGGCCCACACTGA
* *
57579099 TTACTGAATTGGGCTAAGG
1 -TATTGTATTGGGCTAAGG
57579118 GCCTCATTGT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 2 0.03
28 64 0.97
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (28 bp):
TATTGTATTGGGCTAAGGCCCACACTGA
Found at i:57579812 original size:27 final size:27
Alignment explanation
Indices: 57579792--57580166 Score: 363
Period size: 27 Copynumber: 14.0 Consensus size: 27
57579782 AAATACCTAT
*
57579792 ATAGGGTAAAATAACTGAAATACCCCC
1 ATAGGGTAAAATGACTGAAATACCCCC
* * *
57579819 ATAGGGTAGAATGACAGAAATACCTCC
1 ATAGGGTAAAATGACTGAAATACCCCC
*
57579846 ATAGGATAAAATGAAC-GAAATACCCCC
1 ATAGGGTAAAATG-ACTGAAATACCCCC
*
57579873 ATAGGGTAAAATGACTGAAATACCCCT
1 ATAGGGTAAAATGACTGAAATACCCCC
* * **
57579900 ATAGAGTAAAATGAC-CAAATTACCCTT
1 ATAGGGTAAAATGACTGAAA-TACCCCC
* **
57579927 ATAGGGTAAAAAGA-AAAAATA-CCCC
1 ATAGGGTAAAATGACTGAAATACCCCC
* *
57579952 AGAGGGTAAAATGAGC-GAAATACCCCT
1 ATAGGGTAAAATGA-CTGAAATACCCCC
* *
57579979 ATAGGGTAAAAT-AATCGAAATATCCCC
1 ATAGGGTAAAATGACT-GAAATACCCCC
57580006 ATAGGGTAAAATGA-TCGAAATACCCCC
1 ATAGGGTAAAATGACT-GAAATACCCCC
** * * *
57580033 ATAAAGTAAAATTACCGAAATACCTCC
1 ATAGGGTAAAATGACTGAAATACCCCC
*
57580060 ATAGGATAAAATGA-TCGAAATACCCCCC
1 ATAGGGTAAAATGACT-GAAATA-CCCCC
* **
57580088 ATAGGGTAGAATGACTGAAATACCCAT
1 ATAGGGTAAAATGACTGAAATACCCCC
*
57580115 ATGGGGTAAAATGACTGAAATA-CCCC
1 ATAGGGTAAAATGACTGAAATACCCCC
**
57580141 ATAGGGTAAAATGACTGTTATACCCC
1 ATAGGGTAAAATGACTGAAATACCCC
57580167 TAGGAGATGA
Statistics
Matches: 285, Mismatches: 48, Indels: 30
0.79 0.13 0.08
Matches are distributed among these distances:
25 14 0.05
26 34 0.12
27 211 0.74
28 25 0.09
29 1 0.00
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (27 bp):
ATAGGGTAAAATGACTGAAATACCCCC
Found at i:57580571 original size:28 final size:28
Alignment explanation
Indices: 57580531--57580607 Score: 111
Period size: 28 Copynumber: 2.8 Consensus size: 28
57580521 ACTGTAATGT
*
57580531 TACTTTATTGGGCTAAGGCCCACACTGA
1 TACTATATTGGGCTAAGGCCCACACTGA
**
57580559 TACTATATTGGGCTAAGGCCCACACTTT
1 TACTATATTGGGCTAAGGCCCACACTGA
57580587 TACTGA-ATTGGGCTAAGGCCC
1 TACT-ATATTGGGCTAAGGCCC
57580608 TAATTGTACT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
28 44 0.98
29 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.29
Consensus pattern (28 bp):
TACTATATTGGGCTAAGGCCCACACTGA
Found at i:57581417 original size:14 final size:14
Alignment explanation
Indices: 57581398--57581424 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
57581388 CATTTCTTGG
57581398 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
57581412 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
57581425 ACTAGACCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:57585235 original size:21 final size:21
Alignment explanation
Indices: 57585206--57585260 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
57585196 AAAGCTTAAG
57585206 TTTGGAAACTTAATTTGAAAA
1 TTTGGAAACTTAATTTGAAAA
*
57585227 TTTGAAAACTTAATTTGAAAA
1 TTTGGAAACTTAATTTGAAAA
57585248 TTTGGAAACTTAA
1 TTTGGAAACTTAA
57585261 AAATTAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.44, C:0.05, G:0.13, T:0.38
Consensus pattern (21 bp):
TTTGGAAACTTAATTTGAAAA
Found at i:57585241 original size:13 final size:13
Alignment explanation
Indices: 57585189--57585247 Score: 56
Period size: 13 Copynumber: 4.8 Consensus size: 13
57585179 GATATATTTG
*
57585189 TAATTTGAAAGCT
1 TAATTTGAAAACT
*
57585202 TAAGTTTGGAAACT
1 TAA-TTTGAAAACT
57585216 TAATTTG--AA--
1 TAATTTGAAAACT
57585225 -AATTTGAAAACT
1 TAATTTGAAAACT
57585237 TAATTTGAAAA
1 TAATTTGAAAA
57585248 TTTGGAAACT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
8 6 0.16
10 2 0.05
11 2 0.05
13 17 0.45
14 11 0.29
ACGTcount: A:0.44, C:0.05, G:0.14, T:0.37
Consensus pattern (13 bp):
TAATTTGAAAACT
Found at i:57585575 original size:69 final size:69
Alignment explanation
Indices: 57585497--57585826 Score: 505
Period size: 69 Copynumber: 4.9 Consensus size: 69
57585487 TCACTTGTCT
* * * *
57585497 TTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCCCCTATTCACAC
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
57585562 ATCA
66 ATCA
*
57585566 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTTTTGCAGGGAATCTCTCCTGTTCACAC
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
57585631 ATCA
66 ATCA
* * *
57585635 TTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAA--------ATTCACAC
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
57585692 ATCA
66 ATCA
*
57585696 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTTTTGCAGGGAATCTCTCCTGTTCACAC
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
57585761 ATCA
66 ATCA
* *
57585765 TTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAATCTCTCCTGTTCA
1 TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCA
57585827 TGTATCATTT
Statistics
Matches: 237, Mismatches: 16, Indels: 16
0.88 0.06 0.06
Matches are distributed among these distances:
61 57 0.24
69 180 0.76
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (69 bp):
TTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCTCCTGTTCACAC
ATCA
Found at i:57585719 original size:61 final size:62
Alignment explanation
Indices: 57585624--57585813 Score: 274
Period size: 61 Copynumber: 3.0 Consensus size: 62
57585614 ATCTCTCCTG
57585624 TTCACACATCATTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAA-A
1 TTCACACATCATTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAACA
* * *
57585685 TTCACACATCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTTTTGCAGGGAATCTCT
1 TTCACACATCATTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAA-----
*
57585750 CCTG
61 -C-A
57585754 TTCACACATCATTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAA
1 TTCACACATCATTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAA
57585814 TCTCTCCTGT
Statistics
Matches: 114, Mismatches: 7, Indels: 8
0.88 0.05 0.06
Matches are distributed among these distances:
61 57 0.50
69 57 0.50
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.37
Consensus pattern (62 bp):
TTCACACATCATTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAACA
Found at i:57585732 original size:130 final size:131
Alignment explanation
Indices: 57585497--57585813 Score: 528
Period size: 130 Copynumber: 2.4 Consensus size: 131
57585487 TCACTTGTCT
* * * *
57585497 TTTCTTGCAGGGAATATTTCCTGTTCACGCATTATTTTGTTGCAGGGAATCTCCCCTATTCACAC
1 TTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAA------C-ATTCACAC
57585562 ATCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTTTTGCAGGGAATCTCTCCTGTTC
59 ATCATTTCTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTTTTGCAGGGAATCTCTCCTGTTC
57585627 ACACATCA
124 ACACATCA
57585635 TTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAA-ATTCACACATCATTT
1 TTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAACATTCACACATCATTT
57585699 CTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTTTTGCAGGGAATCTCTCCTGTTCACACATC
66 CTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTTTTGCAGGGAATCTCTCCTGTTCACACATC
57585764 A
131 A
57585765 TTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAA
1 TTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAA
57585814 TCTCTCCTGT
Statistics
Matches: 175, Mismatches: 4, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
130 130 0.74
138 45 0.26
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (131 bp):
TTTCTTGTAGGGAATCTCTCCTGTTCACGCATTATGTTGTTGCAGGGAACATTCACACATCATTT
CTTGCAGGGAATCTCTCCTGTTCACGCATTATTTTTTTGCAGGGAATCTCTCCTGTTCACACATC
A
Found at i:57588419 original size:21 final size:22
Alignment explanation
Indices: 57588389--57588433 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
57588379 GAACAAATTG
57588389 TTGATTCTATTTCTTTCTTG-AT
1 TTGATTCTA-TTCTTTCTTGTAT
*
57588411 TTGA-TCTATTCTTTTTTGTAT
1 TTGATTCTATTCTTTCTTGTAT
57588432 TT
1 TT
57588434 CTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 8 0.38
22 4 0.19
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (22 bp):
TTGATTCTATTCTTTCTTGTAT
Found at i:57609184 original size:15 final size:15
Alignment explanation
Indices: 57609164--57609195 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
57609154 GCAAATTACC
*
57609164 TTTTGACCTTCTTGA
1 TTTTGACCATCTTGA
57609179 TTTTGACCATCTTGA
1 TTTTGACCATCTTGA
57609194 TT
1 TT
57609196 GTTACCCCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.19, G:0.12, T:0.53
Consensus pattern (15 bp):
TTTTGACCATCTTGA
Found at i:57610522 original size:60 final size:60
Alignment explanation
Indices: 57610433--57610556 Score: 230
Period size: 60 Copynumber: 2.1 Consensus size: 60
57610423 CTCTCTTTTT
57610433 TTTCTTTTTATACTTGATATCACACCCCTAAGGTTAAAGCCACCAACTAATGACTATTTC
1 TTTCTTTTTATACTTGATATCACACCCCTAAGGTTAAAGCCACCAACTAATGACTATTTC
* *
57610493 TTTCNTTTTATACTTGATATCACACCCCTAAGGTTAAAGCCACCAACTTATGACTATTTC
1 TTTCTTTTTATACTTGATATCACACCCCTAAGGTTAAAGCCACCAACTAATGACTATTTC
57610553 TTTC
1 TTTC
57610557 CCTAATTTTG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (60 bp):
TTTCTTTTTATACTTGATATCACACCCCTAAGGTTAAAGCCACCAACTAATGACTATTTC
Found at i:57614419 original size:33 final size:34
Alignment explanation
Indices: 57614364--57614428 Score: 80
Period size: 33 Copynumber: 1.9 Consensus size: 34
57614354 GTGGTCAAGT
* *
57614364 AGTATCAGTCTGGGCTTGAGCCCTATACAGTATC
1 AGTATCAGTCTGGGCTTGAGCCCAAAACAGTATC
*
57614398 AGTA-CAGTGTGGGCCTT-AGCCCAAAACAGTA
1 AGTATCAGTCTGGG-CTTGAGCCCAAAACAGTA
57614429 ATAATGTGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 20 0.74
34 7 0.26
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (34 bp):
AGTATCAGTCTGGGCTTGAGCCCAAAACAGTATC
Found at i:57614437 original size:28 final size:28
Alignment explanation
Indices: 57614405--57614485 Score: 94
Period size: 28 Copynumber: 2.9 Consensus size: 28
57614395 ATCAGTACAG
57614405 TGTGGGCCTTAGCCCAAAACAGTAATAA
1 TGTGGGCCTTAGCCCAAAACAGTAATAA
* * *
57614433 TGTGGGCCTTAGACCAATACTAG-AATAG
1 TGTGGGCCTTAGCCCAAAAC-AGTAATAA
*
57614461 TGTAGGCCTTAGCCCAATAA-AGTAA
1 TGTGGGCCTTAGCCCAA-AACAGTAA
57614486 CTAGTACAGT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
27 2 0.05
28 39 0.89
29 3 0.07
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (28 bp):
TGTGGGCCTTAGCCCAAAACAGTAATAA
Found at i:57614866 original size:27 final size:27
Alignment explanation
Indices: 57614802--57614986 Score: 146
Period size: 27 Copynumber: 6.8 Consensus size: 27
57614792 TATTTCATCT
*
57614802 TCTAGGGGTATAAT-AGTCATTTTACCC
1 TCTAGGGGTAT-TTCAGTCATTTTACCC
* * *
57614829 TATGGGGGTATTTCAGTCATTTTACGC
1 TCTAGGGGTATTTCAGTCATTTTACCC
* * * *
57614856 TTTAGGAGTATTTCGGTCATTTAACCC
1 TCTAGGGGTATTTCAGTCATTTTACCC
*
57614883 TCCAGGGGTATTTC-GATCATTTTACCC
1 TCTAGGGGTATTTCAG-TCATTTTACCC
* *
57614910 TCCAAGGGGTATTTCAGTCATCTTACCC
1 T-CTAGGGGTATTTCAGTCATTTTACCC
* *
57614938 TCT-GAGGGTATTT-TGATCATCTTACCC
1 TCTAG-GGGTATTTCAG-TCATTTTACCC
**
57614965 TCCGGGGGTATTTC-GATCATTT
1 TCTAGGGGTATTTCAG-TCATTT
57614987 GCCCACGAAT
Statistics
Matches: 130, Mismatches: 20, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
26 4 0.03
27 101 0.78
28 24 0.18
29 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TCTAGGGGTATTTCAGTCATTTTACCC
Found at i:57614947 original size:55 final size:53
Alignment explanation
Indices: 57614816--57614986 Score: 159
Period size: 55 Copynumber: 3.2 Consensus size: 53
57614806 GGGGTATAAT
* * * ** *
57614816 AGTCATTTTACCCTATGGGGGTATTTC-AGTCATTTTACGCTTTAGGAGTATTTC
1 AGTCA-TTTACCCTCTGAGGGTATTTCGA-TCATTTTACCCTCCAGGGGTATTTC
* *
57614870 GGTCATTTAACCCTC-CAGGGGTATTTCGATCATTTTACCCTCCAAGGGGTATTTC
1 AGTCATTT-ACCCTCTGA-GGGTATTTCGATCATTTTACCCTCC-AGGGGTATTTC
* * *
57614925 AGTCATCTTACCCTCTGAGGGTATTTTGATCATCTTACCCTCCGGGGGTATTTC
1 AGTCAT-TTACCCTCTGAGGGTATTTCGATCATTTTACCCTCCAGGGGTATTTC
57614979 -GATCATTT
1 AG-TCATTT
57614987 GCCCACGAAT
Statistics
Matches: 97, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
53 6 0.06
54 43 0.44
55 45 0.46
56 3 0.03
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (53 bp):
AGTCATTTACCCTCTGAGGGTATTTCGATCATTTTACCCTCCAGGGGTATTTC
Found at i:57614949 original size:82 final size:82
Alignment explanation
Indices: 57614833--57614986 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 82
57614823 TTACCCTATG
* * * *
57614833 GGGGTATTTCAGTCATTTTACGCTTTAGGAGTATTTCGGTCAT-TTAACCCTCCAGGGGTATTTC
1 GGGGTATTTCAGTCATCTTACCCTTGAGGAGTATTTCGATCATCTT-ACCCTCCAGGGGTATTTC
57614897 GATCATTTTACCCTCCAA
65 GATCATTTTACCCTCCAA
* *
57614915 GGGGTATTTCAGTCATCTTACCCTCTGAGG-GTATTTTGATCATCTTACCCTCCGGGGGTATTTC
1 GGGGTATTTCAGTCATCTTACCCT-TGAGGAGTATTTCGATCATCTTACCCTCCAGGGGTATTTC
57614979 GATCATTT
65 GATCATTT
57614987 GCCCACGAAT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
82 58 0.91
83 6 0.09
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (82 bp):
GGGGTATTTCAGTCATCTTACCCTTGAGGAGTATTTCGATCATCTTACCCTCCAGGGGTATTTCG
ATCATTTTACCCTCCAA
Found at i:57620813 original size:28 final size:27
Alignment explanation
Indices: 57620781--57620879 Score: 112
Period size: 28 Copynumber: 3.6 Consensus size: 27
57620771 TTAATAAGTA
* *
57620781 CGCACACTTAGTGCTTAATAATCACACT
1 CGCACACTTAGTGCTT-ATAATTAAACT
*
57620809 CGCACACTTAGTGCTT-TACCATTATACT
1 CGCACACTTAGTGCTTATA--ATTAAACT
57620837 CGCACACTTAGTGCATT-TCAATTAAACT
1 CGCACACTTAGTGC-TTAT-AATTAAACT
57620865 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57620880 AATCTCATTA
Statistics
Matches: 64, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
26 2 0.03
27 1 0.02
28 57 0.89
29 3 0.05
30 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.12, T:0.31
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATTAAACT
Found at i:57627845 original size:63 final size:64
Alignment explanation
Indices: 57627763--57627899 Score: 222
Period size: 65 Copynumber: 2.1 Consensus size: 64
57627753 ACATAATAGG
*
57627763 CAAATTACATTTTTACCCCTAATATTTCACA-TTTTCACAATTTAGTCATTTTTGCTCAAAACA
1 CAAAATACATTTTTACCCCTAATATTTCACATTTTTCACAATTTAGTCATTTTTGCTCAAAACA
* * *
57627826 CAAAATACATTTTTGCCCCTAATGTTTCACATTTTTTTACAATTTAGTCATTTTTGCTCAAAACA
1 CAAAATACATTTTTACCCCTAATATTTCACA-TTTTTCACAATTTAGTCATTTTTGCTCAAAACA
57627891 CAAAATACA
1 CAAAATACA
57627900 CAAAATTTGA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
63 28 0.41
65 40 0.59
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.40
Consensus pattern (64 bp):
CAAAATACATTTTTACCCCTAATATTTCACATTTTTCACAATTTAGTCATTTTTGCTCAAAACA
Found at i:57628065 original size:132 final size:132
Alignment explanation
Indices: 57627919--57628182 Score: 510
Period size: 132 Copynumber: 2.0 Consensus size: 132
57627909 ACTACACTCC
57627919 TTAAGGGTCGAATATTCCTAGTATCCATACAAACCCACACATTTCATTTATTTCACATTTTAGCC
1 TTAAGGGTCGAATATTCCTAGTATCCATACAAACCCACACATTTCATTTATTTCACATTTTAGCC
*
57627984 CCTAAAAAATTTTATTTTTACAACTTAACCCTAATTACTCAAATTCATCAACAATTTAAAGACAA
66 CCTAAAAAATTTTATTTTTACAACTTAACCCTAATTACTCAAATTCATCAACAATTCAAAGACAA
57628049 AA
131 AA
57628051 TTAAGGGTCGAATATTCCTAGTATCCATACAAACCCACACATTTCATTTATTTCACATTTTAGCC
1 TTAAGGGTCGAATATTCCTAGTATCCATACAAACCCACACATTTCATTTATTTCACATTTTAGCC
*
57628116 CTTAAAAAATTTTATTTTTACAACTTAACCCTAATTACTCAAATTCATCAACAATTCAAAGACAA
66 CCTAAAAAATTTTATTTTTACAACTTAACCCTAATTACTCAAATTCATCAACAATTCAAAGACAA
57628181 AA
131 AA
57628183 CATGCTAATC
Statistics
Matches: 130, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 130 1.00
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.34
Consensus pattern (132 bp):
TTAAGGGTCGAATATTCCTAGTATCCATACAAACCCACACATTTCATTTATTTCACATTTTAGCC
CCTAAAAAATTTTATTTTTACAACTTAACCCTAATTACTCAAATTCATCAACAATTCAAAGACAA
AA
Found at i:57631950 original size:28 final size:28
Alignment explanation
Indices: 57631877--57631969 Score: 116
Period size: 28 Copynumber: 3.3 Consensus size: 28
57631867 GAGCCCTATA
*
57631877 CAATATCAGT-ACAGTGTCGGCCTTAGCC
1 CAATA-CAGTAACAGTGTGGGCCTTAGCC
* * * *
57631905 CAAAACAATAACAATGTGGGCGTTAGCC
1 CAATACAGTAACAGTGTGGGCCTTAGCC
*
57631933 CAATACAGTAATAGTGTGGGCCTTAGCC
1 CAATACAGTAACAGTGTGGGCCTTAGCC
57631961 CAATACAGT
1 CAATACAGT
57631970 GATCAGTACA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 3 0.06
28 51 0.94
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.23
Consensus pattern (28 bp):
CAATACAGTAACAGTGTGGGCCTTAGCC
Found at i:57637288 original size:79 final size:81
Alignment explanation
Indices: 57637186--57637370 Score: 231
Period size: 79 Copynumber: 2.3 Consensus size: 81
57637176 GCTCCTCGTT
* *
57637186 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
57637248 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
57637266 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
57637330 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
57637346 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57637371 CATCATTCAA
Statistics
Matches: 93, Mismatches: 6, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
78 5 0.05
79 52 0.56
80 36 0.39
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:57637370 original size:40 final size:41
Alignment explanation
Indices: 57637186--57637370 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 41
57637176 GCTCCTCGTT
* * *
57637186 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTACTTCGCA
*
57637226 CAAATGCCTTCGGGACTTAACCCGGAT-TTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGT-ACTTCGCA
57637266 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTACT-TCGCA
* *
57637305 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATTAGT-ACTTCGCA
57637346 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57637371 CATCATTCAA
Statistics
Matches: 126, Mismatches: 8, Indels: 22
0.81 0.05 0.14
Matches are distributed among these distances:
38 3 0.02
39 31 0.25
40 75 0.60
41 16 0.13
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGTACTTCGCA
Found at i:57637643 original size:160 final size:162
Alignment explanation
Indices: 57637379--57637700 Score: 585
Period size: 160 Copynumber: 2.0 Consensus size: 162
57637369 GACATCATTC
* *
57637379 AAATAACCATGCACATTTAACAATAAATCATAGCACATTCGTGTTTCATTTTTGTTAGCAAAACT
1 AAATAACCATGCACATTTAACAATAAATCATAGCACATTCGTATTTCATTTTCGTTAGCAAAACT
*
57637444 CAAACACAAGACATTTATCATTCTTGCAAATTCGGCTCAATAG-C-CACACAAAGAGCATGATTT
66 CAAACACAAGACACTTATCATTCTTGCAAATTCGGCTCAATAGCCACACACAAAGAGCATGATTT
57637507 TAATTTGCTTAAAACATGATCTAATCACATCA
131 TAATTTGCTTAAAACATGATCTAATCACATCA
*
57637539 AAATAACCATGCACATTTAACAATAAATCATGGCACATTCGTATTTCATTTTCGTTAGCAAAACT
1 AAATAACCATGCACATTTAACAATAAATCATAGCACATTCGTATTTCATTTTCGTTAGCAAAACT
*
57637604 CAAACACAAGACACTTATCATTCTTGCAATTTCGGCTCAATAGCCACACACAAAGAGCATGATTT
66 CAAACACAAGACACTTATCATTCTTGCAAATTCGGCTCAATAGCCACACACAAAGAGCATGATTT
57637669 TAATTTGCTTAAAACATGATCTAATCACATCA
131 TAATTTGCTTAAAACATGATCTAATCACATCA
57637701 TAATTTAAGC
Statistics
Matches: 155, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
160 103 0.66
161 1 0.01
162 51 0.33
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (162 bp):
AAATAACCATGCACATTTAACAATAAATCATAGCACATTCGTATTTCATTTTCGTTAGCAAAACT
CAAACACAAGACACTTATCATTCTTGCAAATTCGGCTCAATAGCCACACACAAAGAGCATGATTT
TAATTTGCTTAAAACATGATCTAATCACATCA
Found at i:57643533 original size:25 final size:25
Alignment explanation
Indices: 57643505--57643557 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
57643495 AATAAAACAA
57643505 TCAA-ATCACATTAATATTACACATT
1 TCAACATCACATTAA-ATTACACATT
* * *
57643530 TCAACTTCACATTAAATTTCACTTT
1 TCAACATCACATTAAATTACACATT
57643555 TCA
1 TCA
57643558 CACTATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (25 bp):
TCAACATCACATTAAATTACACATT
Found at i:57650332 original size:42 final size:43
Alignment explanation
Indices: 57650251--57650335 Score: 127
Period size: 42 Copynumber: 2.0 Consensus size: 43
57650241 CCATATTTCA
* *
57650251 TTTCTCATTTCATAATCATTTCTCATATTTGCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTATCATATTTGCCATTTCAATAT
* *
57650294 TTTCTCATCTCATATTCA-TTATCATATTTGTCATTTCAATAT
1 TTTCTCATCTCATAATCATTTATCATATTTGCCATTTCAATAT
57650336 CAATCACATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
42 22 0.58
43 16 0.42
ACGTcount: A:0.26, C:0.20, G:0.02, T:0.52
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTATCATATTTGCCATTTCAATAT
Found at i:57650559 original size:130 final size:130
Alignment explanation
Indices: 57650326--57650847 Score: 1035
Period size: 130 Copynumber: 4.0 Consensus size: 130
57650316 CATATTTGTC
57650326 ATTTCAATATCAATCACATAAATTATTATTTTACTTTCCCCTATTAACACGACACGGGCTAGGAC
1 ATTTCAATATCAATCACATAAATTATTATTTTACTTTCCCCTATTAACACGACACGGGCTAGGAC
57650391 AGATACACGGATCCAACCAACACACTAGTTTGGGACCCAGTGCCTCATCAGATAAATCTGAAGTA
66 AGATACACGGATCCAACCAACACACTAGTTTGGGACCCAGTGCCTCATCAGATAAATCTGAAGTA
57650456 ATTTCAATATCAATCACATAAATTATTATTTTACTTTCCCCTATTAACACGACACGGGCTAGGAC
1 ATTTCAATATCAATCACATAAATTATTATTTTACTTTCCCCTATTAACACGACACGGGCTAGGAC
57650521 AGATACACGGATCCAACCAACACACTAGTTTGGGACCCAGTGCCTCATCAGATAAATCTGAAGTA
66 AGATACACGGATCCAACCAACACACTAGTTTGGGACCCAGTGCCTCATCAGATAAATCTGAAGTA
57650586 ATTTCAATATCAATCACATAAATTATTATTTTACTTTCCCCTATTAACACGACACGGGCTAGGAC
1 ATTTCAATATCAATCACATAAATTATTATTTTACTTTCCCCTATTAACACGACACGGGCTAGGAC
57650651 AGATACACGGATCCAACCAACACACTAGTTTGGGACCCAGTGCCTCATCAGATAAATCTGAAGTA
66 AGATACACGGATCCAACCAACACACTAGTTTGGGACCCAGTGCCTCATCAGATAAATCTGAAGTA
57650716 ATTTCAATATCAATCACATAAATTATTATTTTACTTTCCCCTATTAACACGACACGGGCTAGGAC
1 ATTTCAATATCAATCACATAAATTATTATTTTACTTTCCCCTATTAACACGACACGGGCTAGGAC
*
57650781 AGATACAAGGATCCAACCAACACACTAGTTTGGGACCCAGTGCCTCATCAGATAAATCTGAAGTA
66 AGATACACGGATCCAACCAACACACTAGTTTGGGACCCAGTGCCTCATCAGATAAATCTGAAGTA
57650846 AT
1 AT
57650848 AACTGCACCC
Statistics
Matches: 391, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 391 1.00
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (130 bp):
ATTTCAATATCAATCACATAAATTATTATTTTACTTTCCCCTATTAACACGACACGGGCTAGGAC
AGATACACGGATCCAACCAACACACTAGTTTGGGACCCAGTGCCTCATCAGATAAATCTGAAGTA
Found at i:57651868 original size:4 final size:4
Alignment explanation
Indices: 57651859--57651893 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
57651849 CCTTCTTCTT
57651859 TTTC TTTC TTTC TTTTC TTT- TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC -TTTC TTTC TTTC TTTC TTTC TTT
57651894 GTTTAATTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.10
4 22 0.76
5 4 0.14
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (4 bp):
TTTC
Found at i:57651884 original size:16 final size:15
Alignment explanation
Indices: 57651854--57651893 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
57651844 TGTTCCCTTC
*
57651854 TTCTTT-TTCTTTCT
1 TTCTTTCTTTTTTCT
57651868 TTCTTTTCTTTTTTCT
1 TTC-TTTCTTTTTTCT
57651884 TTCTTTCTTT
1 TTCTTTCTTT
57651894 GTTTAATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (15 bp):
TTCTTTCTTTTTTCT
Found at i:57656661 original size:51 final size:50
Alignment explanation
Indices: 57656530--57656970 Score: 304
Period size: 51 Copynumber: 8.7 Consensus size: 50
57656520 AAAGTGATGG
* * * * * * *
57656530 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGAATG-ATGGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTA-CGGAAAGCTTTGA
* * * *
57656580 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACGGAATAGCTTTGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTACGGAA-AGCTTTGA
* * * * *
57656631 TCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATC-GATAA-ATAATGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTA-CGGA-AAGCT-TTGA
* * *
57656682 TCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGCTTTGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTACGGA-AAGCTTTGA
* * * * * * *
57656733 GCACGTGTGTAGTACTGTGTGAATGCTACAACGTGTATCGGTAAA-CTATGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTA-CGG-AAAGCTTTGA
* * * * * ** *
57656784 TTACATGTGTAGTACTAAGTGAAGGCTACAATGGGTACCAAAAAGCTTTGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTA-CGGAAAGCTTTGA
* * * * *
57656835 TCACGTATGTAGTACTATGTGAAGGCTACTACATGAG-CCGTAAAAC-TTGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACT--ATGTGTACGGAAAGCTTTGA
* * * * *
57656885 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGTAAAAC--TGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTAC-GGAAAGCTTTGA
* *
57656934 TCACGTGTGTAGCACTATGTGAAGGCTACTACGTGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTA
57656971 TCGAATGATA
Statistics
Matches: 311, Mismatches: 66, Indels: 29
0.77 0.16 0.07
Matches are distributed among these distances:
48 3 0.01
49 42 0.14
50 78 0.25
51 176 0.57
52 7 0.02
53 5 0.02
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTACGGAAAGCTTTGA
Found at i:57656732 original size:102 final size:101
Alignment explanation
Indices: 57656530--57656974 Score: 474
Period size: 102 Copynumber: 4.4 Consensus size: 101
57656520 AAAGTGATGG
* * * *
57656530 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATC-A-GAATGATGGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAAT-GGTCACATGTGTAGT
* * * *
57656593 ACTATGTGCAGGCTACTATGCGTACGGAATAGCTTTGA
65 ACTAAGTGAAGGCTACTATGTGTACCGAA-AGCTTTGA
*
57656631 TCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTA
57656696 CTAAGTGAAGGCTACTATGTGTACCGAGAAGCTTTGA
66 CTAAGTGAAGGCTACTATGTGTACCGA-AAGCTTTGA
* * * * * *
57656733 GCACGTGTGTAGTACTGTGTGAATGCTACAACGTGTATCGGTAAACT-ATGGTTACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TAATGGTCACATGTGTAGT
* * * *
57656797 ACTAAGTGAAGGCTACAATGGGTACCAAAAAGCTTTGG
65 ACTAAGTGAAGGCTACTATGTGTACC-GAAAGCTTTGA
* * * * * *
57656835 TCACGTATGTAGTACTATGTGAAGGCTACTACATG-AGCCG-TAAA-ACTTGATCACGTGTGTAG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-TCGATAAATA-ATGGTCACATGTGTAG
* * * * * *
57656897 TACTATGTGAAGGCTACTACGTGAACTGTAAAAC--TGG
64 TACTAAGTGAAGGCTACTATGTGTACCG-AAAGCTTTGA
*
57656934 TCACGTGTGTAGCACTATGTGAAGGCTACTACGTGTATCGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
57656975 ATGATAAAAA
Statistics
Matches: 292, Mismatches: 41, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
99 37 0.13
100 1 0.00
101 79 0.27
102 167 0.57
103 8 0.03
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTA
CTAAGTGAAGGCTACTATGTGTACCGAAAGCTTTGA
Found at i:57656808 original size:153 final size:150
Alignment explanation
Indices: 57656631--57656975 Score: 367
Period size: 153 Copynumber: 2.3 Consensus size: 150
57656621 ATAGCTTTGA
* * * *
57656631 TCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAA-TAATGGTCACATGTGTAGT
1 TCACATGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAAAACT-ATGGTCACATATGTAGT
** * * *
57656695 ACTAAGTGAAGGCTACTATGTGTA-CCG-AGAAGCTTTGAGCACGTGTGTAGTACTGTGTGAATG
65 ACTAAGTGAAGGCTACTACATG-AGCCGTA-AAAC-TTGAGCACGTGTGTAGTACTATGTGAAGG
*
57656758 CTACAACGTGTATCGGT-AAACTATGG
127 CTACAACGTG-AACGGTAAAAC--TGG
* * * * * * * *
57656784 TTACATGTGTAGTACTAAGTGAAGGCTACAATGGGTA-CCAAAAAGCTTTGGTCACGTATGTAGT
1 TCACATGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAAAA-CTATGGTCACATATGTAGT
* *
57656848 ACTATGTGAAGGCTACTACATGAGCCGTAAAACTTGATCACGTGTGTAGTACTATGTGAAGGCTA
65 ACTAAGTGAAGGCTACTACATGAGCCGTAAAACTTGAGCACGTGTGTAGTACTATGTGAAGGCTA
* *
57656913 CTACGTGAACTGTAAAACTGG
130 CAACGTGAACGGTAAAACTGG
* *
57656934 TCACGTGTGTAGCACTATGTGAAGGCTACTACGTGTATCGAA
1 TCACATGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAA
57656976 TGATAAAAAT
Statistics
Matches: 156, Mismatches: 30, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
150 33 0.21
151 7 0.04
152 45 0.29
153 69 0.44
154 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (150 bp):
TCACATGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAAAAACTATGGTCACATATGTAGTA
CTAAGTGAAGGCTACTACATGAGCCGTAAAACTTGAGCACGTGTGTAGTACTATGTGAAGGCTAC
AACGTGAACGGTAAAACTGG
Found at i:57660819 original size:10 final size:10
Alignment explanation
Indices: 57660797--57660829 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
57660787 GAAAAATAGA
*
57660797 AAAT-TTCCA
1 AAATGTTCCT
57660806 AAATGTTCCT
1 AAATGTTCCT
57660816 AAATGTTCCT
1 AAATGTTCCT
57660826 AAAT
1 AAAT
57660830 TTTGGTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.39, C:0.18, G:0.06, T:0.36
Consensus pattern (10 bp):
AAATGTTCCT
Found at i:57669674 original size:31 final size:31
Alignment explanation
Indices: 57669636--57669696 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
57669626 AAATTACGAA
57669636 GGATTATATGCTTGTGTATCCCGAAAGAGAG
1 GGATTATATGCTTGTGTATCCCGAAAGAGAG
57669667 GGATTATATGCTTGTGTATCCCGAAAGAGA
1 GGATTATATGCTTGTGTATCCCGAAAGAGA
57669697 TCTTACTCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.30
Consensus pattern (31 bp):
GGATTATATGCTTGTGTATCCCGAAAGAGAG
Found at i:57684569 original size:22 final size:22
Alignment explanation
Indices: 57684535--57684578 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
57684525 CAAATTTGTG
* *
57684535 AAAATTTATTATAAAAATAATT
1 AAAATTAAATATAAAAATAATT
**
57684557 AAAATTAAATATATTAATAATT
1 AAAATTAAATATAAAAATAATT
57684579 TAAGAGAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTAAATATAAAAATAATT
Found at i:57704668 original size:50 final size:50
Alignment explanation
Indices: 57704562--57704892 Score: 344
Period size: 50 Copynumber: 6.6 Consensus size: 50
57704552 TGCCAAAGAT
* ** * * *
57704562 ATGTCCCAGACATGGTCATACATGGGATGTTTCTTGTAC--TGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGGTGCCAATGCC
* * * * ** * * *
57704611 ATATCCCAAATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
* ** * *
57704661 ATGTCCCAGGCATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
* * * *
57704711 ATGTCCCAAACATGGTCTTACATGAGACCTTTCATCTTGGTGCCAATGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
**
57704761 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG-TTATCGCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAT-GCC
* * *
57704811 ATGTCCTAGACATGGTATTACATGGGACCTCTCATCTCGGTGCCAATTCC
1 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
* *
57704861 ATGTCCCATACATGGTCTTACATGGGATCTCT
1 ATGTCCCAGACATGGTCTTACATGGGACCTCT
57704893 TTACCCAAAT
Statistics
Matches: 231, Mismatches: 47, Indels: 7
0.81 0.16 0.02
Matches are distributed among these distances:
49 29 0.13
50 200 0.87
51 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (50 bp):
ATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCC
Found at i:57704825 original size:150 final size:150
Alignment explanation
Indices: 57704601--57704884 Score: 381
Period size: 150 Copynumber: 1.9 Consensus size: 150
57704591 TTTCTTGTAC
* **
57704601 TGCCAATGCCATATCCCAAATATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGCCATGTC
1 TGCCAATGCCATATCCCAAACATGGTCTTACATGAGACCTCTCATATAGGTGCCCATGCCATGTC
* * * *
57704666 CCAGGCATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAAACATGGTCTTA
66 CCAGACATGGTATTACAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACATGGTCTTA
57704731 CATGAGACCTTTCATCTTGG
131 CATGAGACCTTTCATCTTGG
* * * * * **
57704751 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG-TTATCGCCATGT
1 TGCCAATGCCATATCCCAAACATGGTCTTACATGAGACCTCTCATATAGGTGCCCAT-GCCATGT
* * ** *
57704815 CCTAGACATGGTATTACATGGGACCTCTCATCTCGGTGCCAATTCCATGTCCCATACATGGTCTT
65 CCCAGACATGGTATTACAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACATGGTCTT
57704880 ACATG
130 ACATG
57704885 GGATCTCTTT
Statistics
Matches: 114, Mismatches: 19, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
149 2 0.02
150 112 0.98
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (150 bp):
TGCCAATGCCATATCCCAAACATGGTCTTACATGAGACCTCTCATATAGGTGCCCATGCCATGTC
CCAGACATGGTATTACAGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACATGGTCTTA
CATGAGACCTTTCATCTTGG
Found at i:57708916 original size:41 final size:41
Alignment explanation
Indices: 57708849--57708934 Score: 118
Period size: 41 Copynumber: 2.1 Consensus size: 41
57708839 GCAGATACTT
* * *
57708849 GTCAGCTTGTGTGAGCGGCATGGTGTAGCTACATTCTGACC
1 GTCAACTTGTGTCAGCGGCATCGTGTAGCTACATTCTGACC
* * *
57708890 GTCAACTTGTGTCAGTGGCATCGTGTAGCTACATTTTGACT
1 GTCAACTTGTGTCAGCGGCATCGTGTAGCTACATTCTGACC
57708931 GTCA
1 GTCA
57708935 GCTTTTGTGA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.33
Consensus pattern (41 bp):
GTCAACTTGTGTCAGCGGCATCGTGTAGCTACATTCTGACC
Found at i:57715942 original size:17 final size:17
Alignment explanation
Indices: 57715920--57715952 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
57715910 GTTAGTGAAC
57715920 ATTGTCATTGAATTTTT
1 ATTGTCATTGAATTTTT
*
57715937 ATTGTCATTGCATTTT
1 ATTGTCATTGAATTTT
57715953 AATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.09, G:0.12, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGAATTTTT
Found at i:57721169 original size:13 final size:13
Alignment explanation
Indices: 57721151--57721186 Score: 51
Period size: 11 Copynumber: 3.0 Consensus size: 13
57721141 CCAGCCCGCC
57721151 TATATTAATTTTT
1 TATATTAATTTTT
57721164 TATATT-A-TTTT
1 TATATTAATTTTT
57721175 TATA-TAATTTTT
1 TATATTAATTTTT
57721187 AAATATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.05
11 9 0.43
12 5 0.24
13 6 0.29
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
TATATTAATTTTT
Found at i:57729067 original size:35 final size:35
Alignment explanation
Indices: 57729016--57729091 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
57729006 TGTTTTGAGA
* * *
57729016 TTTGCCAAATAATTGCCAGGGTTTGCTAAGTATAT
1 TTTGTCAAATAATTGCCAAGCTTTGCTAAGTATAT
57729051 TTTGTCAAATAATTGCCAAGCTTTGCTAAGTATAT
1 TTTGTCAAATAATTGCCAAGCTTTGCTAAGTATAT
57729086 TTTGTC
1 TTTGTC
57729092 TATGATATTC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (35 bp):
TTTGTCAAATAATTGCCAAGCTTTGCTAAGTATAT
Found at i:57733935 original size:41 final size:43
Alignment explanation
Indices: 57733886--57734008 Score: 119
Period size: 43 Copynumber: 2.9 Consensus size: 43
57733876 AACCGTTACT
* * *
57733886 CGGTGGAATCAGCATTTAGCAACCACCTT-ATATTC-AGTGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTCACAATCAAG-GATA
* *
57733928 CGG-GGAATCAACACATAGCAACC-CCTTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCACC--TTCACAATCAAGGATA
* * *
57733971 CGGTGGAATAAGCACTTAGCAACCACCTTTAAAATCAA
1 CGGTGGAATCAGCACTTAGCAACCACCTTCACAATCAA
57734009 TAATTTAGGG
Statistics
Matches: 65, Mismatches: 10, Indels: 11
0.76 0.12 0.13
Matches are distributed among these distances:
40 2 0.03
41 17 0.26
42 5 0.08
43 20 0.31
44 19 0.29
45 2 0.03
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (43 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTCACAATCAAGGATA
Found at i:57734007 original size:43 final size:44
Alignment explanation
Indices: 57733886--57734008 Score: 123
Period size: 44 Copynumber: 2.9 Consensus size: 44
57733876 AACCGTTACT
* * * *
57733886 CGGTGGAATCAGCATTTAGCAACCACC-TTATATTC-AGTGATA
1 CGGTGGAATAAGCACTTAGCAACCACCTTTAAAATCAAGTGATA
* *
57733928 CGG-GGAATCAA-CACATAGCAACC-CCTTTTCACAATCAAG-GATA
1 CGGTGGAAT-AAGCACTTAGCAACCACC-TTT-AAAATCAAGTGATA
57733971 CGGTGGAATAAGCACTTAGCAACCACCTTTAAAATCAA
1 CGGTGGAATAAGCACTTAGCAACCACCTTTAAAATCAA
57734009 TAATTTAGGG
Statistics
Matches: 66, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
40 2 0.03
41 15 0.23
42 6 0.09
43 20 0.30
44 21 0.32
45 2 0.03
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (44 bp):
CGGTGGAATAAGCACTTAGCAACCACCTTTAAAATCAAGTGATA
Found at i:57734060 original size:41 final size:42
Alignment explanation
Indices: 57734011--57734123 Score: 142
Period size: 41 Copynumber: 2.7 Consensus size: 42
57734001 AAAATCAATA
** *
57734011 ATTT-AGGGAATCAACACTTAGCAACCCCTTTCTGATTAGAG
1 ATTTCAGGGAATCTGCACTTAGCAACCCCTTTCTGATCAGAG
* * *
57734052 -TTTCAGGGAACCTGCACTTAGCAACCCCTTTTTGATCAGTG
1 ATTTCAGGGAATCTGCACTTAGCAACCCCTTTCTGATCAGAG
57734093 ATTTCA-GGATATCTGCACTTAGCAACCCCTT
1 ATTTCAGGGA-ATCTGCACTTAGCAACCCCTT
57734124 ACATTCAATG
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
40 3 0.05
41 34 0.55
42 25 0.40
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.31
Consensus pattern (42 bp):
ATTTCAGGGAATCTGCACTTAGCAACCCCTTTCTGATCAGAG
Found at i:57741630 original size:42 final size:42
Alignment explanation
Indices: 57741524--57741636 Score: 124
Period size: 41 Copynumber: 2.7 Consensus size: 42
57741514 AGAATAAATA
* * * *
57741524 ATTT-GGGGAATCTACACTTAGCAACCCCTTTTTTATTAGAG
1 ATTTAGGGGAATCTGCACTTAACAACCCCTTTTTGATCAGAG
* *
57741565 -TTTCA-GAGAATCTGCACTTAACAACCCCTTTTTGATCAGTG
1 ATTT-AGGGGAATCTGCACTTAACAACCCCTTTTTGATCAGAG
* *
57741606 ATTTAGGGGAATCTGCACTCAACAACACCTT
1 ATTTAGGGGAATCTGCACTTAACAACCCCTT
57741637 ACATTCAATG
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
40 3 0.05
41 31 0.53
42 25 0.42
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (42 bp):
ATTTAGGGGAATCTGCACTTAACAACCCCTTTTTGATCAGAG
Found at i:57749059 original size:146 final size:148
Alignment explanation
Indices: 57748804--57749161 Score: 508
Period size: 146 Copynumber: 2.4 Consensus size: 148
57748794 TTTAGCCATT
*
57748804 TGTTCGTGTTTTTTTCCTCAAATTTTATTACTTTTAAAAAATATACTATTTTTTAATTTTTTATT
1 TGTTCGT-ATTTTTTCC-CAAATTTTATTAC-TTTAAAAAATATACTATTTTTTAA--TTTTATT
57748869 TTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTCTTTTATAAATAAA-TTT-
61 TTACATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTCTTTTATAAATAAATTTTA
57748932 AAAAAAA-CTTATTTCGACCCTA
126 AAAAAAACCTTATTTCGACCCTA
* *
57748954 TGTTCGTATTTTTATCCCAAATTTTATTACTTACAAAAAATATAGTATTTTTTAATTTT-TTTTA
1 TGTTCGTATTTTT-TCCCAAATTTTATTACTT-TAAAAAATATACTATTTTTTAATTTTATTTTA
* * *
57749018 CATTATTTTAGTATATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTTAAAA
64 CATTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTCTTTTATAAATAAATTTT-AAA
* *
57749083 AAAAACCCTTATTTTGGCCCTA
128 AAAAA-CCTTATTTCGACCCTA
* *
57749105 TGTTCGTATTTTTTCCCGAATTTTATTACTTTTAAAAATATACTATTTTTTTAATTT
1 TGTTCGTATTTTTTCCCAAATTTTATTACTTTAAAAAATATACTA-TTTTTTAATTT
57749162 AGAGTTCTAC
Statistics
Matches: 188, Mismatches: 12, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
146 59 0.31
147 7 0.04
148 2 0.01
149 56 0.30
150 38 0.20
151 26 0.14
ACGTcount: A:0.32, C:0.09, G:0.06, T:0.52
Consensus pattern (148 bp):
TGTTCGTATTTTTTCCCAAATTTTATTACTTTAAAAAATATACTATTTTTTAATTTTATTTTACA
TTATTTTAGTACATTATATTTGAAATGTATTAATTTAGTGTCTTTTATAAATAAATTTTAAAAAA
AACCTTATTTCGACCCTA
Found at i:57750038 original size:19 final size:19
Alignment explanation
Indices: 57750001--57750038 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
57749991 TTTTTTTGTA
*
57750001 TATTATTTTTGTACTTTTT
1 TATTATTTTTGTAATTTTT
*
57750020 TATT-TTTTTGTAATATTT
1 TATTATTTTTGTAATTTTT
57750038 T
1 T
57750039 GGTAAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (19 bp):
TATTATTTTTGTAATTTTT
Found at i:57764084 original size:16 final size:16
Alignment explanation
Indices: 57764063--57764113 Score: 77
Period size: 17 Copynumber: 3.2 Consensus size: 16
57764053 TTATTTCTTC
57764063 TTTTTAGTTTAGTTTG
1 TTTTTAGTTTAGTTTG
*
57764079 TTTTTAGTTTTAATTTG
1 TTTTTAG-TTTAGTTTG
57764096 TTTTT-GTTTAGTTTG
1 TTTTTAGTTTAGTTTG
57764111 TTT
1 TTT
57764114 AAGGACAAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
15 11 0.34
16 8 0.25
17 13 0.41
ACGTcount: A:0.12, C:0.00, G:0.16, T:0.73
Consensus pattern (16 bp):
TTTTTAGTTTAGTTTG
Found at i:57766025 original size:21 final size:21
Alignment explanation
Indices: 57765995--57766042 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
57765985 ATCGAACTTT
* *
57765995 TTAAACCTTCTAGA-TTGCTTC
1 TTAAAGCTTCTA-ACTTGATTC
57766016 TTAAAGCTTCTAACTTGATTC
1 TTAAAGCTTCTAACTTGATTC
57766037 TTAAAG
1 TTAAAG
57766043 TCCTTTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (21 bp):
TTAAAGCTTCTAACTTGATTC
Found at i:57768974 original size:38 final size:38
Alignment explanation
Indices: 57768921--57768999 Score: 131
Period size: 38 Copynumber: 2.1 Consensus size: 38
57768911 AATAAAACAT
57768921 ATATATATAAAATATTTATAAAATTAAGTAATGAATAC
1 ATATATATAAAATATTTATAAAATTAAGTAATGAATAC
** *
57768959 ATATATATATCATATTTATAAAATTAAGTAATGAATTC
1 ATATATATAAAATATTTATAAAATTAAGTAATGAATAC
57768997 ATA
1 ATA
57769000 AAATAATATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (38 bp):
ATATATATAAAATATTTATAAAATTAAGTAATGAATAC
Found at i:57771105 original size:100 final size:100
Alignment explanation
Indices: 57770625--57771195 Score: 833
Period size: 99 Copynumber: 5.7 Consensus size: 100
57770615 TTCTGTCTGG
* * *
57770625 CTGCAATGTCGGGGAAACAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCACCAGGAA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
* * *
57770690 AGTAAGATTCGTCGTTGTGGCTTTAATCTTTTTTAA
66 AGTAAGACTCGCCGTTGTGGCTTTAGTC-TTTTTAA
* *
57770726 CTGCAATGTCGGGGAAGCAAGATTTGCCATTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
57770791 AGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
66 AGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
*
57770826 CTGCAATGT-TGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
57770890 AGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
66 AGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
* *
57770925 CTGCAATGT-TGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTA-GA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCC-AGGG
*
57770988 AAGTAAGACTCGTCGTTGTGGCTTTAGTCTTTTTAA
65 AAGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
* * * * *
57771024 CTGCAATGTTGGGGAAGCAAGATTCGCTGTTATGGCTTTAATTTGTTCCACTGCACCGCTAGGGA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
* ** ** *
57771089 AGAAAGTTTTACCGTTGTGGCTTTAATCTTTTTAA
66 AGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
* * * * * * *
57771124 CTACAACGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTACATCGCCTGGAA
1 CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
57771189 AGTAAGA
66 AGTAAGA
57771196 TTCAACTTAC
Statistics
Matches: 427, Mismatches: 40, Indels: 7
0.90 0.08 0.01
Matches are distributed among these distances:
99 192 0.45
100 150 0.35
101 85 0.20
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (100 bp):
CTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGA
AGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
Found at i:57771194 original size:299 final size:300
Alignment explanation
Indices: 57770625--57771195 Score: 869
Period size: 299 Copynumber: 1.9 Consensus size: 300
57770615 TTCTGTCTGG
57770625 CTGCAATGTCGGGGAAACAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCACCAGGAA
1 CTGCAATGTCGGGGAAACAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCACCAGGAA
* *
57770690 AGTAAGATTCGTCGTTGTGGCTTTAATCTTTTTTAACTGCAATGTCGGGGAAGCAAGATTTGCCA
66 AGTAAGACTCGTCGTTGTGGCTTTAATCTTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCA
* * * *
57770755 TTGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGACTCGCCGTTGTGGCTTTAGTCT
131 TTATGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGAAAGACTCACCGTTGTGGCTTTAATCT
* * * * *
57770820 TTTTAACTGCAATGTTGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCC
196 TTTTAACTACAACGTGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTACACCGCC
*
57770885 AGGGAAGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
261 AGGAAAGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
* * *
57770925 CTGCAATGT-TGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCTA-GA
1 CTGCAATGTCGGGGAAACAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCACC-AGGA
* * *
57770988 AAGTAAGACTCGTCGTTGTGGCTTTAGTC-TTTTTAACTGCAATGTTGGGGAAGCAAGATTCGCT
65 AAGTAAGACTCGTCGTTGTGGCTTTAATCTTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCC
* * * ** *
57771052 GTTATGGCTTTAATTTGTTCCACTGCACCGCTAGGGAAGAAAGTTTTACCGTTGTGGCTTTAATC
130 ATTATGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGAAAGACTCACCGTTGTGGCTTTAATC
*
57771117 TTTTTAACTACAACGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTACATCG
195 TTTTTAACTACAACGT-GGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTACACCG
*
57771182 CCTGGAAAGTAAGA
259 CCAGGAAAGTAAGA
57771196 TTCAACTTAC
Statistics
Matches: 243, Mismatches: 26, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
298 101 0.42
299 132 0.54
300 10 0.04
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (300 bp):
CTGCAATGTCGGGGAAACAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCACCAGGAA
AGTAAGACTCGTCGTTGTGGCTTTAATCTTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCA
TTATGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGAAAGACTCACCGTTGTGGCTTTAATCT
TTTTAACTACAACGTGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTACACCGCC
AGGAAAGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAA
Found at i:57771199 original size:50 final size:50
Alignment explanation
Indices: 57770636--57771198 Score: 477
Period size: 50 Copynumber: 11.3 Consensus size: 50
57770626 TGCAATGTCG
* * *
57770636 GGGAAACAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCACCA
1 GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
* * * * ** ** * *
57770686 GGAAAGTAAGATTCGTCGTTGTGGCTTTAATCTTTTTTAACTGCAATGTCG
1 GGGAAGCAAGATTCGCCGTTGTGGCTTTAATC-TGTTCCACTGCACCGCCT
* * *
57770737 GGGAAGCAAGATTTGCCATTGTGGCTTTAATCTGTTCCACTGCACCGCCA
1 GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
* * * * ** ** *
57770787 GGGAAGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAACTGCAATG-TT
1 GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
*
57770836 GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCA
1 GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
* * * * ** ** *
57770886 GGGAAGTAAGACTCGCCGTTGTGGCTTTAGTCTTTTTAACTGCAATG-TT
1 GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
57770935 GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
1 GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
* * * * * * * ** ** *
57770985 AGAAAGTAAGACTCGTCGTTGTGGCTTTAGTCTTTTTAACTGCAATG-TT
1 GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
* * *
57771034 GGGGAAGCAAGATTCGCTGTTATGGCTTTAATTTGTTCCACTGCACCG-CT
1 -GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
* * ** * ** * * * *
57771084 AGGGAAGAAAGTTTTACCGTTGTGGCTTTAATCTTTTTAACTACAACGTCG
1 -GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
* * *
57771135 GGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTACATCGCCT
1 GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
* *
57771185 GGAAAGTAAGATTC
1 GGGAAGCAAGATTC
57771199 AACTTACTCC
Statistics
Matches: 391, Mismatches: 117, Indels: 10
0.75 0.23 0.02
Matches are distributed among these distances:
49 79 0.20
50 274 0.70
51 38 0.10
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (50 bp):
GGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
Found at i:57771447 original size:44 final size:44
Alignment explanation
Indices: 57771399--57771493 Score: 138
Period size: 44 Copynumber: 2.2 Consensus size: 44
57771389 TACTGTTTAA
* *
57771399 GGAGATAAGACCTGTAAT-TTCCAACCTATTCCACTGCTGACTAG
1 GGAGATAAGACCTGTAATCTT-CAACCTATTCCACTGCTAACCAG
* *
57771443 GGAGATAAGACTTGTCATCTTCAACCTATTCCACTGCTAACCAG
1 GGAGATAAGACCTGTAATCTTCAACCTATTCCACTGCTAACCAG
57771487 GGAGATA
1 GGAGATA
57771494 GAGTTACTGG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 44 0.96
45 2 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (44 bp):
GGAGATAAGACCTGTAATCTTCAACCTATTCCACTGCTAACCAG
Found at i:57771577 original size:44 final size:44
Alignment explanation
Indices: 57771504--57772114 Score: 152
Period size: 44 Copynumber: 13.9 Consensus size: 44
57771494 GAGTTACTGG
* *
57771504 CTTCAATGTACTCCACTA-TAACCTCAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTACT-A-CTCAGGGAGGTAAAATCTACCAT
* * * * **
57771549 CTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTAAAAT
1 CTTCAATCTACTCCACTACTACTCAGGGAGGTAAAATCTACCAT
* * * * * * ****
57771593 CTTCAATCTATTCCATTGCTACCCAGGGAAGTAGAAT-TATTGG
1 CTTCAATCTACTCCACTACTACTCAGGGAGGTAAAATCTACCAT
* * * **
57771636 CTTCAATTTACTCCACT-GTAATCACAGGGAGGTAAAATCCGCCAT
1 CTTCAATCTACTCCACTACT-A-CTCAGGGAGGTAAAATCTACCAT
* * * * * * * *
57771681 CTTCGATCTGCTCTACTACTACTTAGGGAGATGAGATCTGA-AAT
1 CTTCAATCTACTCCACTACTACTCAGGGAGGTAAAATCT-ACCAT
* * * * * ****
57771725 CCTCAATCTATTCCACTGCTGAC-CAGGGAGATAGAAT-TATTGG
1 CTTCAATCTACTCCACTACT-ACTCAGGGAGGTAAAATCTACCAT
* * * **
57771768 CTTCAATGTACTCCACT-GTAACCTCAGGGAGGTAAAACCCGCCAT
1 CTTCAATCTACTCCACTACT-A-CTCAGGGAGGTAAAATCTACCAT
* * * * * ***
57771813 CTTCGATCTGA-TCCACTACTTCTTAGGGAGATAAGATCTGTAAT
1 CTTCAATCT-ACTCCACTACTACTCAGGGAGGTAAAATCTACCAT
** * ** * *** ***
57771857 -TTCTAGCCTATTCCACTACTGAC-CAAAGAGAT-AGGGCTACTGG
1 CTTC-AATCTACTCCACTACT-ACTCAGGGAGGTAAAATCTACCAT
* * *
57771900 CTTCAATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCTGCCAT
1 CTTCAATCTACTCCACTACT-A-CTCAGGGAGGTAAAATCTACCAT
* * * * * * ***
57771945 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
1 CTTCAATCTACTCCACTACTACTCAGGGAGGTAAAATCTACCAT
* * * * * * * ***
57771989 CTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAAT-TACTGG
1 CTTCAATCTACTCCACTACTACTCAGGGAGGTAAAATCTACCAT
* *
57772032 CTTCAATGTACTCCACTA-TAACTCAGGGAGGTAAAATCCACCAT
1 CTTCAATCTACTCCACTACT-ACTCAGGGAGGTAAAATCTACCAT
* * * * *
57772076 CTTCGATCTACTCCACTACTGCTTAGGGAGATAATATCT
1 CTTCAATCTACTCCACTACTACTCAGGGAGGTAAAATCT
57772115 GCTATCTCCG
Statistics
Matches: 383, Mismatches: 159, Indels: 49
0.65 0.27 0.08
Matches are distributed among these distances:
42 7 0.02
43 79 0.21
44 226 0.59
45 66 0.17
46 5 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (44 bp):
CTTCAATCTACTCCACTACTACTCAGGGAGGTAAAATCTACCAT
Found at i:57771619 original size:132 final size:131
Alignment explanation
Indices: 57771440--57772115 Score: 894
Period size: 132 Copynumber: 5.1 Consensus size: 131
57771430 CACTGCTGAC
** * *
57771440 TAGGGAGATAAGA-CTTGTCATCTTCAACCTATTCCACTGCTAACCAGGGAGATAGAGTTACTGG
1 TAGGGAGATAAGATC-TGAAATCTTCAATCTATTCCACTGCT-ACCAGGGAGATAGAATTACTGG
* *
57771504 CTTCAATGTACTCCACTATAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTACT
64 CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACT
57771569 ACT
129 ACT
* * *
57771572 TAGGGAGATAAGATCTAAAATCTTCAATCTATTCCATTGCTACCCAGGGA-AGTAGAATTATTGG
1 TAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTA-CCAGGGAGA-TAGAATTACTGG
* * * * *
57771636 CTTCAATTTACTCCACTGTAATCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCTACTACT
64 CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACT
57771701 ACT
129 ACT
* * *
57771704 TAGGGAGATGAGATCTGAAATCCTCAATCTATTCCACTGCTGACCAGGGAGATAGAATTATTGGC
1 TAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCT-ACCAGGGAGATAGAATTACTGGC
*
57771769 TTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAACCCGCCATCTTCGATCTGA-TCCACTACT
65 TTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCT-ACTCCACTACT
*
57771833 TCT
129 ACT
* ** * ** ***
57771836 TAGGGAGATAAGATCTGTAAT-TTCTAGCCTATTCCACTACTGACCAAAGAGATAGGGCTACTGG
1 TAGGGAGATAAGATCTGAAATCTTC-AATCTATTCCACTGCT-ACCAGGGAGATAGAATTACTGG
* *
57771900 CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACT
64 CTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACT
*
57771965 GCT
129 ACT
* * *
57771968 TAGGGAGATAAGATCTGTAATCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGGC
1 TAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCT-ACCAGGGAGATAGAATTACTGGC
* * *
57772033 TTCAATGTACTCCACTATAA-CTCAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTG
65 TTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTA
57772097 CT
130 CT
*
57772099 TAGGGAGATAATATCTG
1 TAGGGAGATAAGATCTG
57772116 CTATCTCCGA
Statistics
Matches: 479, Mismatches: 56, Indels: 19
0.86 0.10 0.03
Matches are distributed among these distances:
131 63 0.13
132 411 0.86
133 5 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (131 bp):
TAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTACCAGGGAGATAGAATTACTGGCT
TCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTAC
T
Found at i:57772127 original size:44 final size:44
Alignment explanation
Indices: 57771922--57772131 Score: 165
Period size: 44 Copynumber: 4.8 Consensus size: 44
57771912 CCACTGTAAC
* * *
57771922 CTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTCCACTACTG
1 CTCAGGGAGATAAAATCTGCTATCTTCGATCTACTCCACTACTG
* * ** * *
57771966 CTTAGGGAGATAAGATCTG-TAATCTTTAATCTATTCCACTGCTG
1 CTCAGGGAGATAAAATCTGCT-ATCTTCGATCTACTCCACTACTG
* * * ** * * *
57772010 CCCAGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACTA-TAA
1 CTCAGGGAGATAAAATCTGCTATCTTCGATCTACTCCACTACT-G
* ** *
57772053 CTCAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTG
1 CTCAGGGAGATAAAATCTGCTATCTTCGATCTACTCCACTACTG
* * *
57772097 CTTAGGGAGATAATATCTGCTATCTCCGATCTACT
1 CTCAGGGAGATAAAATCTGCTATCTTCGATCTACT
57772132 TCGCCACAAG
Statistics
Matches: 123, Mismatches: 38, Indels: 10
0.72 0.22 0.06
Matches are distributed among these distances:
42 1 0.01
43 28 0.23
44 93 0.76
45 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
CTCAGGGAGATAAAATCTGCTATCTTCGATCTACTCCACTACTG
Found at i:57772161 original size:45 final size:45
Alignment explanation
Indices: 57772111--57772429 Score: 286
Period size: 45 Copynumber: 7.2 Consensus size: 45
57772101 GGGAGATAAT
* * *
57772111 ATCTGCTATCTCCGATCTACTTCGCCACAAGTATGGGAAGACAAT
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
* * ** * ***
57772156 ATCTGCTATC-TCTGATCTTCTTC-ACGTCAATACATGAAGACAAG
1 ATCTGCTATCTTC-GATCTACTTCGCCACCAGTATGGGAAGACAAG
* * ** **
57772200 ATCTGCTATATTTGATCTACTTCGCTGCCAGTACAGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
* * *
57772245 ATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAA
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
* * * * **
57772290 ATCTGCTATC-TCGATGTTCTTCACCACCAGTATGGGACGATGAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
* *** ***
57772334 ATCTGCTATCTTCGATCCACTTC-ATGCCAGTACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
*
57772378 ATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
*
57772423 ACCTGCT
1 ATCTGCT
57772430 GCTTTTTAAC
Statistics
Matches: 211, Mismatches: 58, Indels: 10
0.76 0.21 0.04
Matches are distributed among these distances:
44 101 0.48
45 110 0.52
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
Found at i:57772216 original size:44 final size:45
Alignment explanation
Indices: 57772146--57772400 Score: 130
Period size: 44 Copynumber: 5.7 Consensus size: 45
57772136 CACAAGTATG
* * * *
57772146 GGAAGACAATATCTGCTATCTCTGATCTTCTTCAC-GTCAATACA
1 GGAAGACAAGATCTGCTATATCTGATCTACTTCACTGCCAATACA
* * * *
57772190 TGAAGACAAGATCTGCTATATTTGATCTACTTCGCTGCCAGTACA
1 GGAAGACAAGATCTGCTATATCTGATCTACTTCACTGCCAATACA
* * ** * **
57772235 GGAAGACAAGATCTG-T-TTTCTTCGATCTACTTCGCCACCAGTATG
1 GGAAGACAAGATCTGCTATATC-T-GATCTACTTCACTGCCAATACA
* * * * ** * **
57772280 GGAAGACAAAATCTGCTATCTC-GATGTTCTTCACCACCAGTATG
1 GGAAGACAAGATCTGCTATATCTGATCTACTTCACTGCCAATACA
* ** * * *
57772324 GGACGATGAGATCTGCTATCT-TCGATCCACTTCA-TGCCAGTACA
1 GGAAGACAAGATCTGCTATATCT-GATCTACTTCACTGCCAATACA
*
57772368 TGAAGACAAGATCTGCT-T-TCTTCGATCTACTTC
1 GGAAGACAAGATCTGCTATATC-T-GATCTACTTC
57772401 GCCACCAGTA
Statistics
Matches: 166, Mismatches: 36, Indels: 18
0.75 0.16 0.08
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 97 0.58
45 61 0.37
46 1 0.01
47 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.31
Consensus pattern (45 bp):
GGAAGACAAGATCTGCTATATCTGATCTACTTCACTGCCAATACA
Found at i:57772429 original size:89 final size:89
Alignment explanation
Indices: 57772111--57772429 Score: 336
Period size: 89 Copynumber: 3.6 Consensus size: 89
57772101 GGGAGATAAT
* * * *
57772111 ATCTGCTATCTCCGATCTACTTCGCCACAAGTATGGGAAGACAATATCTGCTATC-TCTGATCTT
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTC-GATCTA
* *
57772175 CTTCACGTCAATACATGAAGACAAG
65 CTTCACGCCAGTACATGAAGACAAG
* * ** ** * *
57772200 ATCTGCTATATTTGATCTACTTCGCTGCCAGTACAGGAAGACAAGATCTGTTTTCTTCGATCTAC
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTAC
* * *** *
57772265 TTCGCCACCAGTATGGGAAGACAAA
66 TTC-ACGCCAGTACATGAAGACAAG
* * * * ** *
57772290 ATCTGCTATC-TCGATGTTCTTCACCACCAGTATGGGACGATGAGATCTGCTATCTTCGATCCAC
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTAC
*
57772354 TTCATGCCAGTACATGAAGACAAG
66 TTCACGCCAGTACATGAAGACAAG
* *
57772378 ATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGACCTGCT
1 ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCT
57772430 GCTTTTTAAC
Statistics
Matches: 177, Mismatches: 50, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
88 23 0.13
89 130 0.73
90 24 0.14
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (89 bp):
ATCTGCTATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTAC
TTCACGCCAGTACATGAAGACAAG
Found at i:57773737 original size:7 final size:7
Alignment explanation
Indices: 57773718--57773766 Score: 57
Period size: 7 Copynumber: 7.0 Consensus size: 7
57773708 TTAGCCTCTC
57773718 CATTTTT
1 CATTTTT
57773725 -ACTTTTT
1 CA-TTTTT
57773732 CATTTTT
1 CATTTTT
57773739 CA-TTTT
1 CATTTTT
*
57773745 CTTTTTT
1 CATTTTT
57773752 CATTTTT
1 CATTTTT
57773759 CATATTTT
1 CAT-TTTT
57773767 TTCTGACTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
6 6 0.17
7 25 0.69
8 5 0.14
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (7 bp):
CATTTTT
Found at i:57773744 original size:13 final size:13
Alignment explanation
Indices: 57773718--57773757 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
57773708 TTAGCCTCTC
*
57773718 CATTTTTACTTTTT
1 CATTTTT-CATTTT
57773732 CATTTTTCATTTT
1 CATTTTTCATTTT
*
57773745 CTTTTTTCATTTT
1 CATTTTTCATTTT
57773758 TCATATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 17 0.71
14 7 0.29
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.72
Consensus pattern (13 bp):
CATTTTTCATTTT
Found at i:57774664 original size:12 final size:12
Alignment explanation
Indices: 57774637--57774764 Score: 62
Period size: 12 Copynumber: 10.4 Consensus size: 12
57774627 TTTTTCTCCT
**
57774637 TTTTTATTTTCT
1 TTTTTATTTTGA
57774649 TTTTTATTTTGA
1 TTTTTATTTTGA
*
57774661 TTTTTCATTTTTCA
1 TTTTT-A-TTTTGA
*
57774675 TTTTTCCTTTTTG-
1 TTTTT--ATTTTGA
*
57774688 CTTTTACTTTTGA
1 TTTTTA-TTTTGA
* * **
57774701 CTTTGATTTTTC
1 TTTTTATTTTGA
* **
57774713 TTTTTCTTTTTC
1 TTTTTATTTTGA
*
57774725 TTCTT-TTTTGA
1 TTTTTATTTTGA
*
57774736 TTTTGATTTTGA
1 TTTTTATTTTGA
*
57774748 TTTTGATTTTGA
1 TTTTTATTTTGA
57774760 TTTTT
1 TTTTT
57774765 TTATTGAATC
Statistics
Matches: 91, Mismatches: 19, Indels: 12
0.75 0.16 0.10
Matches are distributed among these distances:
11 7 0.08
12 59 0.65
13 10 0.11
14 14 0.15
15 1 0.01
ACGTcount: A:0.10, C:0.09, G:0.07, T:0.73
Consensus pattern (12 bp):
TTTTTATTTTGA
Found at i:57774739 original size:6 final size:6
Alignment explanation
Indices: 57774730--57774763 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
57774720 TTTTCTTCTT
57774730 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
57774764 TTTATTGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.71
Consensus pattern (6 bp):
TTTTGA
Found at i:57774771 original size:18 final size:17
Alignment explanation
Indices: 57774695--57774771 Score: 64
Period size: 18 Copynumber: 4.4 Consensus size: 17
57774685 TTGCTTTTAC
*
57774695 TTTTGACTTTGATTTTT
1 TTTTGATTTTGATTTTT
** ** *
57774712 CTTTTTCTTTTTCTTCTT
1 -TTTTGATTTTGATTTTT
*
57774730 TTTTGATTTTGATTTTGA
1 TTTTGATTTTGATTTT-T
57774748 TTTTGATTTTGATTTTT
1 TTTTGATTTTGATTTTT
57774765 TTATTGA
1 TT-TTGA
57774772 ATCTGAACTC
Statistics
Matches: 44, Mismatches: 13, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
17 13 0.30
18 31 0.70
ACGTcount: A:0.12, C:0.06, G:0.10, T:0.71
Consensus pattern (17 bp):
TTTTGATTTTGATTTTT
Found at i:57775589 original size:25 final size:25
Alignment explanation
Indices: 57775542--57775598 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
57775532 AAAGTCCAAT
*
57775542 AGAATGAAAGAATAATTATTCAAAA
1 AGAATGAAAGAATAATTACTCAAAA
*
57775567 AGAATGAAAGAAT-ATTGGCTCAAAA
1 AGAATGAAAGAATAATT-ACTCAAAA
57775592 ATGAATG
1 A-GAATG
57775599 CAAATATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 3 0.11
25 20 0.71
26 5 0.18
ACGTcount: A:0.54, C:0.05, G:0.18, T:0.23
Consensus pattern (25 bp):
AGAATGAAAGAATAATTACTCAAAA
Found at i:57784699 original size:22 final size:23
Alignment explanation
Indices: 57784668--57784724 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 23
57784658 ACAAATGCCT
*
57784668 TAAAATTATTAATTAAAAGTAA-A
1 TAAAAGTATTAATTAAAA-TAATA
*
57784691 -AAAAGTATT-TTTAAAATAATA
1 TAAAAGTATTAATTAAAATAATA
*
57784712 TAAATGTATTAAT
1 TAAAAGTATTAAT
57784725 ATGTAATTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
20 3 0.11
21 7 0.26
22 16 0.59
23 1 0.04
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (23 bp):
TAAAAGTATTAATTAAAATAATA
Found at i:57786318 original size:19 final size:18
Alignment explanation
Indices: 57786294--57786396 Score: 66
Period size: 19 Copynumber: 5.5 Consensus size: 18
57786284 TAAATTTTAT
57786294 TAAAAATTAAAAAAAACTA
1 TAAAAATTAAAAAAAA-TA
*
57786313 TAAAAATCGTAAAAAATA-A
1 TAAAAAT--TAAAAAAAATA
***
57786332 TAAAAATTGAAAAATTTTA
1 TAAAAATT-AAAAAAAATA
***
57786351 TAAAAATTGTTAAAAATA
1 TAAAAATTAAAAAAAATA
*
57786369 T-AAAATATAGAAAAAATTA
1 TAAAAAT-TA-AAAAAAATA
57786388 TAAAAATTA
1 TAAAAATTA
57786397 TCGTACAAAA
Statistics
Matches: 64, Mismatches: 13, Indels: 14
0.70 0.14 0.15
Matches are distributed among these distances:
17 6 0.09
18 12 0.19
19 33 0.52
20 5 0.08
21 8 0.12
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (18 bp):
TAAAAATTAAAAAAAATA
Found at i:57786336 original size:38 final size:37
Alignment explanation
Indices: 57786294--57786394 Score: 114
Period size: 38 Copynumber: 2.7 Consensus size: 37
57786284 TAAATTTTAT
*
57786294 TAAAAATTAAAAAAAACTATAAAAATCGTAAAAAATAA
1 TAAAAATTAAAAAAAATTATAAAAATCGTAAAAAAT-A
* ** * *
57786332 TAAAAATTGAAAAATTTTATAAAAATTGTTAAAAATA
1 TAAAAATTAAAAAAAATTATAAAAATCGTAAAAAATA
*
57786369 T-AAAATATAGAAAAAATTATAAAAAT
1 TAAAAAT-TAAAAAAAATTATAAAAAT
57786395 TATCGTACAA
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
36 5 0.10
37 17 0.33
38 30 0.58
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (37 bp):
TAAAAATTAAAAAAAATTATAAAAATCGTAAAAAATA
Found at i:57786396 original size:9 final size:9
Alignment explanation
Indices: 57786210--57786397 Score: 57
Period size: 9 Copynumber: 20.0 Consensus size: 9
57786200 ACATATAGCA
*
57786210 AAAAATGAT
1 AAAAATTAT
57786219 AAAAA--AT
1 AAAAATTAT
*
57786226 AAAAATCAAT
1 AAAAAT-TAT
*
57786236 AAAATTTAT
1 AAAAATTAT
**
57786245 AAATTTTAT
1 AAAAATTAT
* *
57786254 TAAATTTAAAT
1 AAAAATT--AT
57786265 AAAAA-TAT
1 AAAAATTAT
57786273 AAAAATATATTT
1 AAAAAT-TA--T
**
57786285 AAATTTTATT
1 AAAAATTA-T
*
57786295 AAAAATTAAA
1 AAAAATT-AT
*
57786305 AAAAACTAT
1 AAAAATTAT
57786314 AAAAATCGTA-
1 AAAAAT--TAT
*
57786324 AAAAATAAT
1 AAAAATTAT
57786333 AAAAATTGA-
1 AAAAATT-AT
*
57786342 AAAATTTTAT
1 AAAA-ATTAT
*
57786352 AAAAATTGTT
1 AAAAATT-AT
57786362 AAAAA-TAT
1 AAAAATTAT
*
57786370 -AAAATATAGA
1 AAAAAT-TA-T
57786380 AAAAATTAT
1 AAAAATTAT
57786389 AAAAATTAT
1 AAAAATTAT
57786398 CGTACAAAAA
Statistics
Matches: 135, Mismatches: 23, Indels: 42
0.68 0.12 0.21
Matches are distributed among these distances:
7 11 0.08
8 9 0.07
9 51 0.38
10 44 0.33
11 15 0.11
12 5 0.04
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:57786616 original size:19 final size:18
Alignment explanation
Indices: 57786592--57786674 Score: 55
Period size: 19 Copynumber: 4.5 Consensus size: 18
57786582 TTCTTTAATA
*
57786592 ATTTTTTTATTATTTTTAT
1 ATTTTTTTA-AATTTTTAT
*
57786611 ATTTTTATTAAAATTTTAT
1 ATTTTT-TTAAATTTTTAT
*
57786630 A-TTTTTTATAACTTTTAT
1 ATTTTTTTA-AATTTTTAT
* *
57786648 -TTATTTCT-ATTTTTTAT
1 ATT-TTTTTAAATTTTTAT
57786665 AATTTTTTTA
1 -ATTTTTTTA
57786675 CCACATGCCA
Statistics
Matches: 50, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
17 10 0.20
18 17 0.34
19 20 0.40
20 3 0.06
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTTTTTTAAATTTTTAT
Found at i:57786634 original size:18 final size:19
Alignment explanation
Indices: 57786592--57786647 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
57786582 TTCTTTAATA
* *
57786592 ATTTTTTTATTATTTTTAT
1 ATTTTTTTATAAATTTTAT
57786611 ATTTTTATTA-AAATTTTAT
1 ATTTTT-TTATAAATTTTAT
*
57786630 A-TTTTTTATAACTTTTAT
1 ATTTTTTTATAAATTTTAT
57786648 TTATTTCTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
17 3 0.09
18 12 0.38
19 14 0.44
20 3 0.09
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.70
Consensus pattern (19 bp):
ATTTTTTTATAAATTTTAT
Found at i:57787146 original size:25 final size:25
Alignment explanation
Indices: 57787112--57787238 Score: 254
Period size: 25 Copynumber: 5.1 Consensus size: 25
57787102 AGAAAGAAAA
57787112 TTTCAATCTGTGATTGAACATTTAC
1 TTTCAATCTGTGATTGAACATTTAC
57787137 TTTCAATCTGTGATTGAACATTTAC
1 TTTCAATCTGTGATTGAACATTTAC
57787162 TTTCAATCTGTGATTGAACATTTAC
1 TTTCAATCTGTGATTGAACATTTAC
57787187 TTTCAATCTGTGATTGAACATTTAC
1 TTTCAATCTGTGATTGAACATTTAC
57787212 TTTCAATCTGTGATTGAACATTTAC
1 TTTCAATCTGTGATTGAACATTTAC
57787237 TT
1 TT
57787239 ACTATTGTGG
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 102 1.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.45
Consensus pattern (25 bp):
TTTCAATCTGTGATTGAACATTTAC
Found at i:57788617 original size:6 final size:6
Alignment explanation
Indices: 57788603--57788636 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
57788593 CCCTAACCCA
*
57788603 TCACAG TCACCG TCACCG TCACCG TCACCG TCAC
1 TCACCG TCACCG TCACCG TCACCG TCACCG TCAC
57788637 TGAATTAGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.21, C:0.47, G:0.15, T:0.18
Consensus pattern (6 bp):
TCACCG
Found at i:57788848 original size:18 final size:19
Alignment explanation
Indices: 57788827--57788862 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
57788817 ATTGAAACAA
*
57788827 AACAT-AAAATTTTAGAAC
1 AACATGAAAATTTGAGAAC
57788845 AACATGAAAATTTGAGAA
1 AACATGAAAATTTGAGAA
57788863 ACAGGGGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.56, C:0.08, G:0.11, T:0.25
Consensus pattern (19 bp):
AACATGAAAATTTGAGAAC
Found at i:57790789 original size:23 final size:23
Alignment explanation
Indices: 57790759--57790812 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
57790749 TCAAGTGTCA
57790759 TGATCTCTAATTTCCTCTTTACT
1 TGATCTCTAATTTCCTCTTTACT
57790782 TGATCTCTAATTTCCTCTTTACT
1 TGATCTCTAATTTCCTCTTTACT
*
57790805 TAATCTCT
1 TGATCTCT
57790813 TGCTCGTTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.19, C:0.26, G:0.04, T:0.52
Consensus pattern (23 bp):
TGATCTCTAATTTCCTCTTTACT
Done.