Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 186 of 203
Found at i:59150903 original size:45 final size:46
Alignment explanation
Indices: 59150834--59150947 Score: 178
Period size: 45 Copynumber: 2.5 Consensus size: 46
59150824 GTGGTAGACC
* * *
59150834 AGTCAAGAATAGAGCCAAATCAATCTGGTTAACTCCCAACTAA-CA
1 AGTCAAGAAGAGAGTCAAACCAATCTGGTTAACTCCCAACTAACCA
*
59150879 AGTCAAGAAGAGAGTCAAACCAATCTGGTTGACTCCCAACTAACCA
1 AGTCAAGAAGAGAGTCAAACCAATCTGGTTAACTCCCAACTAACCA
59150925 A-TCAAGAAGAGAGTCAAACCAAT
1 AGTCAAGAAGAGAGTCAAACCAAT
59150948 TGAACAGTGT
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
45 61 0.95
46 3 0.05
ACGTcount: A:0.43, C:0.24, G:0.16, T:0.18
Consensus pattern (46 bp):
AGTCAAGAAGAGAGTCAAACCAATCTGGTTAACTCCCAACTAACCA
Found at i:59152187 original size:21 final size:21
Alignment explanation
Indices: 59152158--59152227 Score: 74
Period size: 20 Copynumber: 3.4 Consensus size: 21
59152148 AAATTAACTG
59152158 ATAAATTGAACATGATTAATT
1 ATAAATTGAACATGATTAATT
* * *
59152179 ATAATTTG-AGAT-ATTTAGTT
1 ATAAATTGAACATGA-TTAATT
59152199 -TAAATTGAACATGATTAATT
1 ATAAATTGAACATGATTAATT
*
59152219 ATAATTTGA
1 ATAAATTGA
59152228 GATATTTAGT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
19 7 0.18
20 16 0.42
21 15 0.39
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (21 bp):
ATAAATTGAACATGATTAATT
Found at i:59152203 original size:40 final size:40
Alignment explanation
Indices: 59152159--59152238 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
59152149 AATTAACTGA
59152159 TAAATTGAACATGATTAATTATAATTTGAGATATTTAGTT
1 TAAATTGAACATGATTAATTATAATTTGAGATATTTAGTT
59152199 TAAATTGAACATGATTAATTATAATTTGAGATATTTAGTT
1 TAAATTGAACATGATTAATTATAATTTGAGATATTTAGTT
59152239 AATTGATATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.40, C:0.03, G:0.12, T:0.45
Consensus pattern (40 bp):
TAAATTGAACATGATTAATTATAATTTGAGATATTTAGTT
Found at i:59155727 original size:41 final size:41
Alignment explanation
Indices: 59155682--59155763 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
59155672 ATATTTTATT
*
59155682 TTATCTTTTAGTATTTTATTAGAATAAGAGAATTATTTTCC
1 TTATCTTTTAGTAGTTTATTAGAATAAGAGAATTATTTTCC
*
59155723 TTATCTTTTAGTAGTTTATTAGAATAAGGGAATTATTTTCC
1 TTATCTTTTAGTAGTTTATTAGAATAAGAGAATTATTTTCC
59155764 CAATTAGGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.50
Consensus pattern (41 bp):
TTATCTTTTAGTAGTTTATTAGAATAAGAGAATTATTTTCC
Found at i:59156107 original size:19 final size:19
Alignment explanation
Indices: 59156066--59156108 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
59156056 AATATTTTTT
*
59156066 ATGATTAACACAACAATTT
1 ATGATTAACACAACAATTA
*
59156085 ATGATTAACATAGA-AATTA
1 ATGATTAACACA-ACAATTA
59156104 ATGAT
1 ATGAT
59156109 GTTAATGTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 20 0.95
20 1 0.05
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.33
Consensus pattern (19 bp):
ATGATTAACACAACAATTA
Found at i:59161196 original size:27 final size:30
Alignment explanation
Indices: 59161153--59161213 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 30
59161143 TTTTTAAAAT
59161153 ATTTTTTTACAACTTTT-ATAAT-TT-TAA
1 ATTTTTTTACAACTTTTAATAATATTATAA
**
59161180 ATTTTTTTACATTTTTTAATAATATTATAA
1 ATTTTTTTACAACTTTTAATAATATTATAA
59161210 ATTT
1 ATTT
59161214 CAACAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 15 0.52
28 5 0.17
29 2 0.07
30 7 0.24
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (30 bp):
ATTTTTTTACAACTTTTAATAATATTATAA
Found at i:59165138 original size:22 final size:23
Alignment explanation
Indices: 59165108--59165156 Score: 91
Period size: 22 Copynumber: 2.2 Consensus size: 23
59165098 TGTTGGAGGA
59165108 TAAGCGAATATCAATCAATCAAT
1 TAAGCGAATATCAATCAATCAAT
59165131 TAAG-GAATATCAATCAATCAAT
1 TAAGCGAATATCAATCAATCAAT
59165153 TAAG
1 TAAG
59165157 TTAACTAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.49, C:0.14, G:0.10, T:0.27
Consensus pattern (23 bp):
TAAGCGAATATCAATCAATCAAT
Found at i:59171189 original size:114 final size:114
Alignment explanation
Indices: 59171071--59171279 Score: 251
Period size: 114 Copynumber: 1.8 Consensus size: 114
59171061 AGAATTAGCG
* * * * * * * *
59171071 GCGCTTTATCATAAGCGCCGCAAAATTGTTAAGA-AATCGTTGCCGTTTTTCATTTATCTTTTCG
1 GCGCTTTATCACAAGCGACGCAAAACTGTTAAGAGAA-CGATGCCATTTTTAATTTAGCTTTTAG
*
59171135 AGACGTTAGTGGCGATTTTC-AGAAAACGCCGTATTAGCGAAGCTTTAGTC
65 AGACGTTAGTGGCGATTGTCTA-AAAACGCCGTATTAGCGAAGCTTTAGTC
* * * *
59171185 GCGCTTTATCACAAGTGATGCAAAACTGTTAAGAGAACGATGTCATTTTTAATTTAGGTTTTAGA
1 GCGCTTTATCACAAGCGACGCAAAACTGTTAAGAGAACGATGCCATTTTTAATTTAGCTTTTAGA
* *
59171250 GACTTTAGTGGCGCTTGTCTAAAAACGCCG
66 GACGTTAGTGGCGATTGTCTAAAAACGCCG
59171280 CAAAATATAG
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
114 75 0.96
115 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (114 bp):
GCGCTTTATCACAAGCGACGCAAAACTGTTAAGAGAACGATGCCATTTTTAATTTAGCTTTTAGA
GACGTTAGTGGCGATTGTCTAAAAACGCCGTATTAGCGAAGCTTTAGTC
Found at i:59171918 original size:21 final size:21
Alignment explanation
Indices: 59171885--59171924 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
59171875 CTTTAATTTA
59171885 GGGTTTAAGGGATATAGGTTAG
1 GGGTTTAAGGGATAT-GGTTAG
*
59171907 GGGTTT-ATGGATATGGTT
1 GGGTTTAAGGGATATGGTT
59171925 TAAGGATTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 7 0.41
22 6 0.35
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.38
Consensus pattern (21 bp):
GGGTTTAAGGGATATGGTTAG
Found at i:59171946 original size:7 final size:7
Alignment explanation
Indices: 59171934--59171972 Score: 60
Period size: 7 Copynumber: 5.4 Consensus size: 7
59171924 TTAAGGATTG
59171934 GGGTTAA
1 GGGTTAA
59171941 GGGTTAA
1 GGGTTAA
*
59171948 GGGTGTAG
1 GGGT-TAA
59171956 GGGTTAA
1 GGGTTAA
59171963 GGGTTAA
1 GGGTTAA
59171970 GGG
1 GGG
59171973 CTGGGGTTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 23 0.79
8 6 0.21
ACGTcount: A:0.23, C:0.00, G:0.51, T:0.26
Consensus pattern (7 bp):
GGGTTAA
Found at i:59171972 original size:15 final size:15
Alignment explanation
Indices: 59171934--59171972 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
59171924 TTAAGGATTG
59171934 GGGTTAA-GGGTTAA
1 GGGTTAAGGGGTTAA
59171948 GGGTGT-AGGGGTTAA
1 GGGT-TAAGGGGTTAA
59171963 GGGTTAAGGG
1 GGGTTAAGGG
59171973 CTGGGGTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.23, C:0.00, G:0.51, T:0.26
Consensus pattern (15 bp):
GGGTTAAGGGGTTAA
Found at i:59171992 original size:8 final size:7
Alignment explanation
Indices: 59171933--59171995 Score: 56
Period size: 7 Copynumber: 8.9 Consensus size: 7
59171923 TTTAAGGATT
59171933 GGGGTTA
1 GGGGTTA
*
59171940 AGGGTTA
1 GGGGTTA
*
59171947 AGGGTGTA
1 GGGGT-TA
59171955 GGGGTTA
1 GGGGTTA
*
59171962 AGGGTTA
1 GGGGTTA
* *
59171969 AGGGCT-
1 GGGGTTA
59171975 GGGGTTA
1 GGGGTTA
59171982 GGGGCTTA
1 GGGG-TTA
59171990 GGGGTT
1 GGGGTT
59171996 TATAGTTAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
6 4 0.09
7 30 0.64
8 13 0.28
ACGTcount: A:0.17, C:0.03, G:0.52, T:0.27
Consensus pattern (7 bp):
GGGGTTA
Found at i:59171992 original size:20 final size:20
Alignment explanation
Indices: 59171932--59171981 Score: 73
Period size: 22 Copynumber: 2.4 Consensus size: 20
59171922 GTTTAAGGAT
*
59171932 TGGGGTTAAGGGTTAAGGGTG
1 TGGGGTTAAGGGTTAAGGG-C
59171953 TAGGGGTTAAGGGTTAAGGGC
1 T-GGGGTTAAGGGTTAAGGGC
59171974 TGGGGTTA
1 TGGGGTTA
59171982 GGGGCTTAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 7 0.26
21 2 0.07
22 18 0.67
ACGTcount: A:0.20, C:0.02, G:0.50, T:0.28
Consensus pattern (20 bp):
TGGGGTTAAGGGTTAAGGGC
Found at i:59171995 original size:15 final size:14
Alignment explanation
Indices: 59171901--59171995 Score: 59
Period size: 14 Copynumber: 6.8 Consensus size: 14
59171891 AAGGGATATA
* *
59171901 GGTTAGGGGTTTAT
1 GGTTAGGGGTTAAG
* * *
59171915 GGATATGGTTTAAG
1 GGTTAGGGGTTAAG
*
59171929 GATT-GGGGTTAAG
1 GGTTAGGGGTTAAG
* *
59171942 GGTTAAGGGTGTAGG
1 GGTTAGGGGT-TAAG
*
59171957 GGTTAAGGGTTAAG
1 GGTTAGGGGTTAAG
* *
59171971 GGCT-GGGGTTAGG
1 GGTTAGGGGTTAAG
59171984 GGCTTAGGGGTT
1 GG-TTAGGGGTT
59171996 TATAGTTAAT
Statistics
Matches: 60, Mismatches: 17, Indels: 7
0.71 0.20 0.08
Matches are distributed among these distances:
13 19 0.32
14 22 0.37
15 19 0.32
ACGTcount: A:0.19, C:0.02, G:0.47, T:0.32
Consensus pattern (14 bp):
GGTTAGGGGTTAAG
Found at i:59172185 original size:7 final size:7
Alignment explanation
Indices: 59172167--59172220 Score: 92
Period size: 7 Copynumber: 7.7 Consensus size: 7
59172157 TATGGTTTAA
59172167 GGGTTA-
1 GGGTTAG
59172173 GGGTTAG
1 GGGTTAG
59172180 GGGTTAG
1 GGGTTAG
59172187 GGGTTAG
1 GGGTTAG
59172194 GGGTTAG
1 GGGTTAG
59172201 GGGTTAG
1 GGGTTAG
59172208 GGGTTTAG
1 GGG-TTAG
59172216 GGGTT
1 GGGTT
59172221 TATAGTTAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.13
7 33 0.72
8 7 0.15
ACGTcount: A:0.13, C:0.00, G:0.56, T:0.31
Consensus pattern (7 bp):
GGGTTAG
Found at i:59174073 original size:27 final size:29
Alignment explanation
Indices: 59174019--59174074 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
59174009 ATTTAATTTA
* *
59174019 TATTAAGTTGATTGTTACTTTATCAATTAT
1 TATTAAGTTGATTGTTA-GTGATCAATTAT
59174049 TATTAAGTTGATTGTT-GTGAT-AATTA
1 TATTAAGTTGATTGTTAGTGATCAATTA
59174075 AAATTGATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 5 0.21
28 3 0.12
30 16 0.67
ACGTcount: A:0.30, C:0.04, G:0.14, T:0.52
Consensus pattern (29 bp):
TATTAAGTTGATTGTTAGTGATCAATTAT
Found at i:59175262 original size:20 final size:20
Alignment explanation
Indices: 59175239--59175277 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
59175229 TATAACCTAC
59175239 ATAAAATTAAGATAACTTAT
1 ATAAAATTAAGATAACTTAT
*
59175259 ATAATATTAAGATAACTTA
1 ATAAAATTAAGATAACTTA
59175278 CATTCTACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (20 bp):
ATAAAATTAAGATAACTTAT
Found at i:59175304 original size:25 final size:25
Alignment explanation
Indices: 59175283--59175348 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
59175273 ACTTACATTC
59175283 TACAGAACTTACATAACATACATAA
1 TACAGAACTTACATAACATACATAA
*
59175308 TACATAACTTACATAAC-TAACATAA
1 TACAGAACTTACATAACAT-ACATAA
* *
59175333 TACATAGCTTACATAA
1 TACAGAACTTACATAA
59175349 TACTCAACTT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 1 0.03
25 37 0.97
ACGTcount: A:0.50, C:0.20, G:0.03, T:0.27
Consensus pattern (25 bp):
TACAGAACTTACATAACATACATAA
Found at i:59175337 original size:41 final size:41
Alignment explanation
Indices: 59175292--59175404 Score: 129
Period size: 41 Copynumber: 2.8 Consensus size: 41
59175282 CTACAGAACT
*
59175292 TACATAACATACATAATACATAACTTACATAACTAACATAA
1 TACATAACTTACATAATACATAACTTACATAACTAACATAA
* * * *
59175333 TACATAGCTTACATAATAC-TCAACTTACTTAGCTTACATAA
1 TACATAACTTACATAATACAT-AACTTACATAACTAACATAA
* * * *
59175374 TAAATAACTTACATAAAATACAACTTACATA
1 TACATAACTTACATAATACATAACTTACATA
59175405 GCTTGCATTC
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
40 1 0.02
41 58 0.98
ACGTcount: A:0.49, C:0.19, G:0.02, T:0.30
Consensus pattern (41 bp):
TACATAACTTACATAATACATAACTTACATAACTAACATAA
Found at i:59175359 original size:16 final size:16
Alignment explanation
Indices: 59175270--59175360 Score: 71
Period size: 16 Copynumber: 5.6 Consensus size: 16
59175260 TAATATTAAG
**
59175270 ATAACTTACATTCTAC
1 ATAACTTACATAATAC
*
59175286 AGAACTTACATAACATAC
1 ATAACTTACAT-A-ATAC
59175304 ATAA--TACATAACTTAC
1 ATAACTTACATAA--TAC
*
59175320 ATAACTAACATAATAC
1 ATAACTTACATAATAC
*
59175336 ATAGCTTACATAATAC
1 ATAACTTACATAATAC
59175352 -TCAACTTAC
1 AT-AACTTAC
59175361 TTAGCTTACA
Statistics
Matches: 60, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
14 1 0.02
15 2 0.03
16 45 0.75
18 12 0.20
ACGTcount: A:0.46, C:0.22, G:0.02, T:0.30
Consensus pattern (16 bp):
ATAACTTACATAATAC
Found at i:59175382 original size:25 final size:25
Alignment explanation
Indices: 59175308--59175388 Score: 87
Period size: 25 Copynumber: 3.2 Consensus size: 25
59175298 ACATACATAA
*
59175308 TACATAACTTACATAACTAACATAA--
1 TACATAGCTTACATAA-TAA-ATAACT
*
59175333 TACATAGCTTACATAAT-ACTCAACT
1 TACATAGCTTACATAATAAAT-AACT
*
59175358 TACTTAGCTTACATAATAAATAACT
1 TACATAGCTTACATAATAAATAACT
59175383 TACATA
1 TACATA
59175389 AAATACAACT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
22 1 0.02
23 3 0.06
24 1 0.02
25 40 0.85
26 2 0.04
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (25 bp):
TACATAGCTTACATAATAAATAACT
Found at i:59175386 original size:16 final size:16
Alignment explanation
Indices: 59175365--59175404 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
59175355 ACTTACTTAG
*
59175365 CTTACATAATAA-ATAA
1 CTTACATAA-AATACAA
59175381 CTTACATAAAATACAA
1 CTTACATAAAATACAA
59175397 CTTACATA
1 CTTACATA
59175405 GCTTGCATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 2 0.09
16 20 0.91
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (16 bp):
CTTACATAAAATACAA
Found at i:59175403 original size:66 final size:66
Alignment explanation
Indices: 59175274--59175470 Score: 209
Period size: 66 Copynumber: 3.0 Consensus size: 66
59175264 ATTAAGATAA
** * * * * * * *
59175274 CTTACATTCTACAGAACTTACATAACATACATAATACATAACTTACAT-AACTAACATA-ATACA
1 CTTACATAATACACAACTTACGTAGCTTACATAATAAATAACTTACATAAAAT-ACA-ACTTACA
59175337 TAG
64 TAG
* *
59175340 CTTACATAATACTCAACTTACTTAGCTTACATAATAAATAACTTACATAAAATACAACTTACATA
1 CTTACATAATACACAACTTACGTAGCTTACATAATAAATAACTTACATAAAATACAACTTACATA
59175405 G
66 G
* ** * * *
59175406 CTTGCATTCTACACAATTTACGTAGTTTACATAATAAATAGCTTACATAAAATACAACTTACATA
1 CTTACATAATACACAACTTACGTAGCTTACATAATAAATAACTTACATAAAATACAACTTACATA
59175471 AAAAAGTGAA
Statistics
Matches: 111, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
65 1 0.01
66 107 0.96
67 3 0.03
ACGTcount: A:0.45, C:0.20, G:0.04, T:0.31
Consensus pattern (66 bp):
CTTACATAATACACAACTTACGTAGCTTACATAATAAATAACTTACATAAAATACAACTTACATA
G
Found at i:59180793 original size:21 final size:21
Alignment explanation
Indices: 59180767--59180817 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
59180757 CTACAACTTA
*
59180767 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGAG
*
59180788 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
59180809 AAGCAGAGG
1 AAGCAGAGG
59180818 TTCAAAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.47, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:59181897 original size:39 final size:39
Alignment explanation
Indices: 59181843--59181988 Score: 179
Period size: 39 Copynumber: 3.7 Consensus size: 39
59181833 CGGTGTATTG
59181843 TATCGAGCTTTGAGCCTAGCAGGCCTTGTGCTAGTGACT
1 TATCGAGCTTTGAGCCTAGCAGGCCTTGTGCTAGTGACT
* * *
59181882 TATCGAGCTTTGAGCCTAACAAGCTTTGTGCTAGTGACT
1 TATCGAGCTTTGAGCCTAGCAGGCCTTGTGCTAGTGACT
* ** *
59181921 TATC-AGGCTTTGAGCCTAGCAGG-CTTCATGCCGGAGACT
1 TATCGA-GCTTTGAGCCTAGCAGGCCTT-GTGCTAGTGACT
* *
59181960 TATCGGGCTTTGAGCCTAGCAGGCTTTGT
1 TATCGAGCTTTGAGCCTAGCAGGCCTTGT
59181989 TCCGATGTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
38 3 0.03
39 85 0.94
40 2 0.02
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.31
Consensus pattern (39 bp):
TATCGAGCTTTGAGCCTAGCAGGCCTTGTGCTAGTGACT
Found at i:59182072 original size:38 final size:38
Alignment explanation
Indices: 59181920--59182062 Score: 137
Period size: 38 Copynumber: 3.7 Consensus size: 38
59181910 TGCTAGTGAC
* * * *
59181920 TTATCAGGCTTTGA-GCCTAGCAGGCTTCATGCCGGAGAC
1 TTATCAAGC-TTGATGCCTAGCAAGCTTCATGCCGGTG-T
** * ** * *
59181959 TTATCGGGCTTTGA-GCCTAGCAGGCTTTGTTCCGATGT
1 TTATCAAGC-TTGATGCCTAGCAAGCTTCATGCCGGTGT
59181997 TTATCAAGCTTGATGCCTAGCAAGCTTCATGCCGGTGT
1 TTATCAAGCTTGATGCCTAGCAAGCTTCATGCCGGTGT
*
59182035 TTATCAGGCTTGATGCCTAGCAAGCTTC
1 TTATCAAGCTTGATGCCTAGCAAGCTTC
59182063 GTGTTGGTGT
Statistics
Matches: 88, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
37 4 0.05
38 53 0.60
39 31 0.35
ACGTcount: A:0.19, C:0.24, G:0.26, T:0.31
Consensus pattern (38 bp):
TTATCAAGCTTGATGCCTAGCAAGCTTCATGCCGGTGT
Found at i:59182897 original size:21 final size:21
Alignment explanation
Indices: 59182871--59182910 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
59182861 TTAAGGCATT
59182871 GTAGGCTCGTTTGAATGCCTC
1 GTAGGCTCGTTTGAATGCCTC
* *
59182892 GTAGGCTTGTTTTAATGCC
1 GTAGGCTCGTTTGAATGCC
59182911 CATAAATGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.20, G:0.28, T:0.38
Consensus pattern (21 bp):
GTAGGCTCGTTTGAATGCCTC
Found at i:59185172 original size:19 final size:19
Alignment explanation
Indices: 59185148--59185217 Score: 95
Period size: 19 Copynumber: 3.6 Consensus size: 19
59185138 TATTCATAAA
59185148 AAAGGGAGGAAATCAGTGT
1 AAAGGGAGGAAATCAGTGT
*
59185167 AAAGGGGGGAAATCAGTGT
1 AAAGGGAGGAAATCAGTGT
* **
59185186 AAAGAGAAAAAAATCAGTGT
1 AAAG-GGAGGAAATCAGTGT
59185206 AAAGGGAGGAAA
1 AAAGGGAGGAAA
59185218 AAAGAAATCA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
19 27 0.64
20 15 0.36
ACGTcount: A:0.49, C:0.04, G:0.34, T:0.13
Consensus pattern (19 bp):
AAAGGGAGGAAATCAGTGT
Found at i:59186055 original size:24 final size:24
Alignment explanation
Indices: 59186028--59186211 Score: 93
Period size: 24 Copynumber: 7.9 Consensus size: 24
59186018 TTATTGTATA
*
59186028 TTATTATTTTAGATTTATCATGTT
1 TTATTATTTTAAATTTATCATGTT
59186052 TTATTATTTGT-AATTTATCAATG--
1 TTATTATTT-TAAATTTATC-ATGTT
* *
59186075 TTATTAATTTAAATTCATC--GTT
1 TTATTATTTTAAATTTATCATGTT
**
59186097 AACATTATTTTAAATTTATCATG-T
1 -TTATTATTTTAAATTTATCATGTT
* * *
59186121 ATATTTATTTCAAATTTATCAT-TA
1 TTA-TTATTTTAAATTTATCATGTT
* * * *
59186145 ATA-T-TTTTAAATTTATTATATA
1 TTATTATTTTAAATTTATCATGTT
* **
59186167 CTATTATTTTGGATTTATCAT-TT
1 TTATTATTTTAAATTTATCATGTT
*
59186190 ATGATTATTTTAGAA-TTATCAT
1 -TTATTATTTTA-AATTTATCAT
59186212 CAAAATTTTT
Statistics
Matches: 124, Mismatches: 21, Indels: 30
0.71 0.12 0.17
Matches are distributed among these distances:
20 1 0.01
21 13 0.10
22 6 0.05
23 34 0.27
24 64 0.52
25 6 0.05
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.56
Consensus pattern (24 bp):
TTATTATTTTAAATTTATCATGTT
Found at i:59186089 original size:23 final size:22
Alignment explanation
Indices: 59186028--59186142 Score: 74
Period size: 23 Copynumber: 5.0 Consensus size: 22
59186018 TTATTGTATA
* *
59186028 TTATTATTTTAGATTTATCATG
1 TTATTAATTTAAATTTATCATG
*
59186050 TT-TTATTATTTGTAATTTATCAATG
1 TTATTA--ATTT-AAATTTATC-ATG
*
59186075 TTATTAATTTAAATTCATC--G
1 TTATTAATTTAAATTTATCATG
*
59186095 TTAACATTATTTTAAATTTATCATG
1 TT---ATTAATTTAAATTTATCATG
*
59186120 TATATTTATTTCAAATTTATCAT
1 T-TATTAATTT-AAATTTATCAT
59186143 TAATATTTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
20 3 0.04
21 3 0.04
22 2 0.03
23 31 0.43
24 22 0.31
25 7 0.10
26 4 0.06
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (22 bp):
TTATTAATTTAAATTTATCATG
Found at i:59186105 original size:46 final size:47
Alignment explanation
Indices: 59186054--59186160 Score: 125
Period size: 46 Copynumber: 2.3 Consensus size: 47
59186044 ATCATGTTTT
*
59186054 ATTATTTGT-AATTTATCAATGT-TATTAATTT-AAATTCATCGTTAAC
1 ATTATTT-TAAATTTATC-ATGTATATTAATTTCAAATTCATCATTAAC
* * *
59186100 ATTATTTTAAATTTATCATGTATATTTATTTCAAATTTATCATTAAT
1 ATTATTTTAAATTTATCATGTATATTAATTTCAAATTCATCATTAAC
59186147 A-T-TTTTAAATTTAT
1 ATTATTTTAAATTTAT
59186161 TATATACTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
45 17 0.31
46 24 0.44
47 13 0.24
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.54
Consensus pattern (47 bp):
ATTATTTTAAATTTATCATGTATATTAATTTCAAATTCATCATTAAC
Found at i:59186198 original size:69 final size:70
Alignment explanation
Indices: 59185992--59186265 Score: 201
Period size: 69 Copynumber: 4.0 Consensus size: 70
59185982 TATTATCATT
* * * * * *
59185992 AAATTAATCATTAATATTATCTAAGTTTAT-TGTATATTATTATTTTAGATTTATCATGTTTTAT
1 AAATTTATCATTAATATTATTTAAATTTATATATATACTATTATTTTAGATTTATCAT-TTATAT
*
59186056 TATTTG
65 TATTTC
* * ** * * * *
59186062 TAATTTATCAATGTTATTAATTTAAATTCATCGT-TA-AC-ATTATTTTAAATTTATCATGTATA
1 AAATTTATCATTAATATT-ATTTAAATTTAT-ATATATACTATTATTTTAGATTTATCATTTATA
59186124 TTTATTTC
64 -TTATTTC
*
59186132 AAATTTATCATTAATATT-TTTAAATTTAT-TATATACTATTATTTTGGATTTATCATTTATGAT
1 AAATTTATCATTAATATTATTTAAATTTATATATATACTATTATTTTAGATTTATCATTTAT-AT
*
59186195 TATTTT
65 TATTTC
* * * * * * *
59186201 AGAA-TTATCATCAAAATT-TTTAAATTT-TATATGTATTATTATTTCAAATTTAT--TATATAT
1 A-AATTTATCATTAATATTATTTAAATTTATATATATACTATTATTTTAGATTTATCATTTATAT
59186261 TATTT
65 TATTT
59186266 ATTGTAAATT
Statistics
Matches: 164, Mismatches: 30, Indels: 24
0.75 0.14 0.11
Matches are distributed among these distances:
66 8 0.05
67 6 0.04
68 13 0.08
69 70 0.43
70 54 0.33
71 10 0.06
72 2 0.01
73 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (70 bp):
AAATTTATCATTAATATTATTTAAATTTATATATATACTATTATTTTAGATTTATCATTTATATT
ATTTC
Found at i:59186277 original size:24 final size:23
Alignment explanation
Indices: 59186219--59186277 Score: 59
Period size: 24 Copynumber: 2.4 Consensus size: 23
59186209 CATCAAAATT
59186219 TTTAAATT-TTATATGTATTATTA
1 TTTAAATTATTATA-GTATTATTA
59186242 TTTCAAATTTATTATA-TATTATTTA
1 TTT-AAA-TTATTATAGTATTA-TTA
59186267 TTGTAAATTAT
1 TT-TAAATTAT
59186278 CCAATTCATT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
23 3 0.10
24 12 0.39
25 10 0.32
26 6 0.19
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (23 bp):
TTTAAATTATTATAGTATTATTA
Found at i:59189091 original size:15 final size:18
Alignment explanation
Indices: 59189066--59189101 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
59189056 GAGTGGAAAG
59189066 AAAATTGGAAG-GAT-GA
1 AAAATTGGAAGAGATAGA
59189082 AAAATT-GAAGAGATAGA
1 AAAATTGGAAGAGATAGA
59189099 AAA
1 AAA
59189102 CCATATTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 4 0.22
16 9 0.50
17 5 0.28
ACGTcount: A:0.58, C:0.00, G:0.25, T:0.17
Consensus pattern (18 bp):
AAAATTGGAAGAGATAGA
Found at i:59189697 original size:16 final size:17
Alignment explanation
Indices: 59189671--59189702 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
59189661 GTTGCTTGGC
59189671 AGAGTAAAAATAAAAAG
1 AGAGTAAAAATAAAAAG
59189688 AGAG-AAAAATAAAAA
1 AGAGTAAAAATAAAAA
59189703 TATTTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.75, C:0.00, G:0.16, T:0.09
Consensus pattern (17 bp):
AGAGTAAAAATAAAAAG
Found at i:59196811 original size:10 final size:10
Alignment explanation
Indices: 59196796--59196830 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
59196786 TAACATGTTG
*
59196796 AATTTTAATT
1 AATTTTGATT
59196806 AATTTTGATT
1 AATTTTGATT
59196816 AATTTTGATT
1 AATTTTGATT
59196826 -ATTTT
1 AATTTT
59196831 CGATATATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 5 0.21
10 19 0.79
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (10 bp):
AATTTTGATT
Found at i:59199618 original size:84 final size:84
Alignment explanation
Indices: 59199477--59199804 Score: 381
Period size: 84 Copynumber: 3.9 Consensus size: 84
59199467 AACACGTCAG
* * * *
59199477 AAAAAGGGAAGCCTTTGTGGCAAACTATAAAAAAGGAAGCCTTTGTGGCGATTTATGACAAGGGA
1 AAAAAGGGAAGCCTTTGTGGCAATCTATGAAAAGGGAAGCCTTTGTGGCGATTTATGAAAAGGGA
* *
59199542 AGTCTTTGTGGCGAATTAT
66 AGCCTTTGTGGCGAACTAT
* * * * * * **
59199561 AAAAAAGAAAGCCTTTGCGGCGATCTATGAAAAGGGAAGCCTTTGTGGTGATATATGAAAAGAAA
1 AAAAAGGGAAGCCTTTGTGGCAATCTATGAAAAGGGAAGCCTTTGTGGCGATTTATGAAAAGGGA
* *
59199626 AGCCTTTGTGGTGAACAAT
66 AGCCTTTGTGGCGAACTAT
* ** * * *
59199645 -AAGAGGGAAGCCTTTGTATCGATCTATGAAAAGGGAAGCCTTTGTGGCGATCTATGAAAAAGGA
1 AAAAAGGGAAGCCTTTGTGGCAATCTATGAAAAGGGAAGCCTTTGTGGCGATTTATGAAAAGGGA
*
59199709 AACCTTTGTGGCGAACTAT
66 AGCCTTTGTGGCGAACTAT
* * * * *
59199728 AAAAAGGGAAGCCTTTATGGCAATCTATGAAAAGGGAAGCCTTTATGGTGATTTATG-AAATGAA
1 AAAAAGGGAAGCCTTTGTGGCAATCTATGAAAAGGGAAGCCTTTGTGGCGATTTATGAAAAGGGA
*
59199792 AGCCTTTATGGCG
66 AGCCTTTGTGGCG
59199805 GTCTATGTTA
Statistics
Matches: 201, Mismatches: 42, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
83 85 0.42
84 116 0.58
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (84 bp):
AAAAAGGGAAGCCTTTGTGGCAATCTATGAAAAGGGAAGCCTTTGTGGCGATTTATGAAAAGGGA
AGCCTTTGTGGCGAACTAT
Found at i:59199733 original size:139 final size:139
Alignment explanation
Indices: 59199511--59199778 Score: 360
Period size: 139 Copynumber: 1.9 Consensus size: 139
59199501 CTATAAAAAA
* * * *
59199511 GGAAGCCTTTGTGGCGATTTATGACAAGGGAAGTCTTTGTGGCGAATTATAAAAAAGAAAGCCTT
1 GGAAGCCTTTGTAGCGATCTATGAAAAGGGAAGCCTTTGTGGCGAATTATAAAAAAGAAAGCCTT
* * * ** *
59199576 TGCGGCGATCTATGAAAAGGGAAGCCTTTGTGGTGATATATGAAAAGAAAAGCCTTTGTGGTGAA
66 TGCGGCGAACTATAAAAAGGGAAGCCTTTATGGCAATATATGAAAAGAAAAGCCTTTATGGTGAA
59199641 CAATAAGAG
131 CAATAAGAG
* *
59199650 GGAAGCCTTTGTATCGATCTATGAAAAGGGAAGCCTTTGTGGCG-ATCTATGAAAAAGGAAA-CC
1 GGAAGCCTTTGTAGCGATCTATGAAAAGGGAAGCCTTTGTGGCGAAT-TAT-AAAAAAGAAAGCC
* * **
59199713 TTTGTGGCGAACTATAAAAAGGGAAGCCTTTATGGCAATCTATGAAAAGGGAAGCCTTTATGGTG
64 TTTGCGGCGAACTATAAAAAGGGAAGCCTTTATGGCAATATATGAAAAGAAAAGCCTTTATGGTG
59199778 A
129 A
59199779 TTTATGAAAT
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
138 2 0.02
139 100 0.90
140 9 0.08
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.26
Consensus pattern (139 bp):
GGAAGCCTTTGTAGCGATCTATGAAAAGGGAAGCCTTTGTGGCGAATTATAAAAAAGAAAGCCTT
TGCGGCGAACTATAAAAAGGGAAGCCTTTATGGCAATATATGAAAAGAAAAGCCTTTATGGTGAA
CAATAAGAG
Found at i:59199757 original size:167 final size:166
Alignment explanation
Indices: 59199481--59199798 Score: 447
Period size: 167 Copynumber: 1.9 Consensus size: 166
59199471 CGTCAGAAAA
* * * * **
59199481 AGGGAAGCCTTTGTGGCAAACTATAAAAAAGGAAGCCTTTGTGGCGATTTATGACAAGGGAAGTC
1 AGGGAAGCCTTTGTAGCAAACTATAAAAAAGGAAGCCTTTGTGGCGATCTATGAAAAAGGAAACC
* * * *
59199546 TTTGTGGCGAATTATAAAAAAGAAAGCCTTTGCGGCGATCTATGAAAAGGGAAGCCTTTGTGGTG
66 TTTGTGGCGAACTATAAAAAAGAAAGCCTTTACGGCAATCTATGAAAAGGGAAGCCTTTATGGTG
59199611 ATATATGAAAAGAAAAGCCTTTGTGGTGAACAATAAG
131 ATATATGAAAAG-AAAGCCTTTGTGGTGAACAATAAG
* * * * *
59199648 AGGGAAGCCTTTGTATCGATCTATGAAAAGGGAAGCCTTTGTGGCGATCTATGAAAAAGGAAACC
1 AGGGAAGCCTTTGTAGCAAACTATAAAAAAGGAAGCCTTTGTGGCGATCTATGAAAAAGGAAACC
* * *
59199713 TTTGTGGCGAACTATAAAAAGGGAAGCCTTTATGGCAATCTATGAAAAGGGAAGCCTTTATGGTG
66 TTTGTGGCGAACTATAAAAAAGAAAGCCTTTACGGCAATCTATGAAAAGGGAAGCCTTTATGGTG
* *
59199778 ATTTATGAAATGAAAGCCTTT
131 ATATATGAAAAGAAAGCCTTT
59199799 ATGGCGGTCT
Statistics
Matches: 131, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
166 9 0.07
167 122 0.93
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.26
Consensus pattern (166 bp):
AGGGAAGCCTTTGTAGCAAACTATAAAAAAGGAAGCCTTTGTGGCGATCTATGAAAAAGGAAACC
TTTGTGGCGAACTATAAAAAAGAAAGCCTTTACGGCAATCTATGAAAAGGGAAGCCTTTATGGTG
ATATATGAAAAGAAAGCCTTTGTGGTGAACAATAAG
Found at i:59199772 original size:28 final size:28
Alignment explanation
Indices: 59199478--59199811 Score: 332
Period size: 28 Copynumber: 12.0 Consensus size: 28
59199468 ACACGTCAGA
* * *
59199478 AAAAGGGAAGCCTTTGTGGCAAACTATA
1 AAAAGGGAAGCCTTTGTGGCGATCTATG
* *
59199506 AAAAAGGAAGCCTTTGTGGCGATTTATG
1 AAAAGGGAAGCCTTTGTGGCGATCTATG
* * *
59199534 ACAAGGGAAGTCTTTGTGGCGAAT-TATA
1 AAAAGGGAAGCCTTTGTGGCG-ATCTATG
* * *
59199562 AAAAAGAAAGCCTTTGCGGCGATCTATG
1 AAAAGGGAAGCCTTTGTGGCGATCTATG
* *
59199590 AAAAGGGAAGCCTTTGTGGTGATATATG
1 AAAAGGGAAGCCTTTGTGGCGATCTATG
** * * *
59199618 AAAAGAAAAGCCTTTGTGGTGAACAAT-
1 AAAAGGGAAGCCTTTGTGGCGATCTATG
* **
59199645 AAGAGGGAAGCCTTTGTATCGATCTATG
1 AAAAGGGAAGCCTTTGTGGCGATCTATG
59199673 AAAAGGGAAGCCTTTGTGGCGATCTATG
1 AAAAGGGAAGCCTTTGTGGCGATCTATG
* * * *
59199701 AAAAAGGAAACCTTTGTGGCGAACTATA
1 AAAAGGGAAGCCTTTGTGGCGATCTATG
* *
59199729 AAAAGGGAAGCCTTTATGGCAATCTATG
1 AAAAGGGAAGCCTTTGTGGCGATCTATG
* * *
59199757 AAAAGGGAAGCCTTTATGGTGATTTATG
1 AAAAGGGAAGCCTTTGTGGCGATCTATG
* * * *
59199785 -AAATGAAAGCCTTTATGGCGGTCTATG
1 AAAAGGGAAGCCTTTGTGGCGATCTATG
59199812 TTACAGAGTA
Statistics
Matches: 249, Mismatches: 54, Indels: 7
0.80 0.17 0.02
Matches are distributed among these distances:
27 43 0.17
28 204 0.82
29 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (28 bp):
AAAAGGGAAGCCTTTGTGGCGATCTATG
Found at i:59203136 original size:20 final size:19
Alignment explanation
Indices: 59203092--59203137 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
59203082 GCCATTGTTG
59203092 AGCTTG-TGAAGTTTTTAA
1 AGCTTGATGAAGTTTTTAA
*
59203110 AGTTTGATGATAG-TTTTATA
1 AGCTTGATGA-AGTTTTTA-A
59203130 AGCTTGAT
1 AGCTTGAT
59203138 AGTGAAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 5 0.22
19 8 0.35
20 10 0.43
ACGTcount: A:0.28, C:0.04, G:0.22, T:0.46
Consensus pattern (19 bp):
AGCTTGATGAAGTTTTTAA
Found at i:59205076 original size:25 final size:25
Alignment explanation
Indices: 59205048--59205130 Score: 94
Period size: 25 Copynumber: 3.2 Consensus size: 25
59205038 TTTAAGCTGA
* *
59205048 TGTTTATTTGTAGGATTTGAGTCGG
1 TGTTTATTAGTAGGCTTTGAGTCGG
* *
59205073 TGTTTATTAGTAGGCTTTGAGCCAG
1 TGTTTATTAGTAGGCTTTGAGTCGG
* *
59205098 TGATTTATCTAGCAGGCTGTGAGTCGG
1 TG-TTTAT-TAGTAGGCTTTGAGTCGG
59205125 TGTTTA
1 TGTTTA
59205131 ATTATCAGGC
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
25 23 0.48
26 9 0.19
27 16 0.33
ACGTcount: A:0.18, C:0.10, G:0.30, T:0.42
Consensus pattern (25 bp):
TGTTTATTAGTAGGCTTTGAGTCGG
Found at i:59205139 original size:26 final size:25
Alignment explanation
Indices: 59205065--59205140 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 25
59205055 TTGTAGGATT
*
59205065 TGAGTCGGTGTTTATTAGT-AGGCTT
1 TGAGTCGGTGTTTATTA-TCAGGCTG
* * *
59205090 TGAGCCAGTGATTTATCTAGCAGGCTG
1 TGAGTCGGTG-TTTAT-TATCAGGCTG
59205117 TGAGTCGGTGTTTAATTATCAGGC
1 TGAGTCGGTGTTT-ATTATCAGGC
59205141 CTTAAGTCAG
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
25 8 0.20
26 15 0.38
27 17 0.43
ACGTcount: A:0.20, C:0.13, G:0.30, T:0.37
Consensus pattern (25 bp):
TGAGTCGGTGTTTATTATCAGGCTG
Found at i:59212189 original size:12 final size:12
Alignment explanation
Indices: 59212172--59212202 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
59212162 TTAGTGAATT
*
59212172 ACACGGCCTAGC
1 ACACGGCCTAAC
59212184 ACACGGCCTAAC
1 ACACGGCCTAAC
59212196 ACACGGC
1 ACACGGC
59212203 TGTGTGTGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.42, G:0.23, T:0.06
Consensus pattern (12 bp):
ACACGGCCTAAC
Found at i:59221043 original size:28 final size:28
Alignment explanation
Indices: 59220994--59221277 Score: 218
Period size: 28 Copynumber: 10.2 Consensus size: 28
59220984 TAGAAAAGAT
* *
59220994 GAAGCCTTTTGTGGCAAACTATAAAAAGA
1 GAAGCC-TTTGTGGCGAACTATAAAAAGG
* *
59221023 GAAGCCTTTGTGGCGACCTATGAAAAGG
1 GAAGCCTTTGTGGCGAACTATAAAAAGG
* *
59221051 GAAGCCTTTGTGGTGAATTATAAAAAGG
1 GAAGCCTTTGTGGCGAACTATAAAAAGG
* * *
59221079 GAAGTCTTTGTGGCGATCTATGAAAAGG
1 GAAGCCTTTGTGGCGAACTATAAAAAGG
* * *
59221107 GAAGTCTTTGTGGCGATA-TATGAAAATG
1 GAAGCCTTTGTGGCGA-ACTATAAAAAGG
* *
59221135 GAAGCCTTTGTGGCG-GCTATGAAAAGG
1 GAAGCCTTTGTGGCGAACTATAAAAAGG
** * *
59221162 GAAGCCTTTGTGGAAAATTATAAAAAGA
1 GAAGCCTTTGTGGCGAACTATAAAAAGG
* * * * ** *
59221190 AAAGTCTTTCTAGAAAATTAT-AAAAGG
1 GAAGCCTTTGTGGCGAACTATAAAAAGG
* * *
59221217 GAAGCCTTTCTGG-AAATCTATAAGAAGG
1 GAAGCCTTTGTGGCGAA-CTATAAAAAGG
* * *
59221245 GAAGCCTTTGTTGC-AATCTATAGATAGG
1 GAAGCCTTTGTGGCGAA-CTATAAAAAGG
59221273 GAAGC
1 GAAGC
59221278 ATTTATGAAT
Statistics
Matches: 210, Mismatches: 39, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
26 3 0.01
27 40 0.19
28 161 0.77
29 6 0.03
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (28 bp):
GAAGCCTTTGTGGCGAACTATAAAAAGG
Found at i:59221074 original size:56 final size:56
Alignment explanation
Indices: 59220994--59221255 Score: 255
Period size: 56 Copynumber: 4.7 Consensus size: 56
59220984 TAGAAAAGAT
* *
59220994 GAAGCCTTTTGTGGCAAACTATAAAAAGAGAAGCCTTTGTGGCGACCTATGAAAAGG
1 GAAGCC-TTTGTGGCAAATTATAAAAAGAGAAGCCTTTGTGGCGAACTATGAAAAGG
** * * *
59221051 GAAGCCTTTGTGGTGAATTATAAAAAGGGAAGTCTTTGTGGCGATCTATGAAAAGG
1 GAAGCCTTTGTGGCAAATTATAAAAAGAGAAGCCTTTGTGGCGAACTATGAAAAGG
* * * *
59221107 GAAGTCTTTGTGGC-GATATATGAAAATG-GAAGCCTTTGTGGCG-GCTATGAAAAGG
1 GAAGCCTTTGTGGCAAAT-TAT-AAAAAGAGAAGCCTTTGTGGCGAACTATGAAAAGG
* * * * * ** *
59221162 GAAGCCTTTGTGGAAAATTATAAAAAGAAAAGTCTTTCTAGAAAATTAT-AAAAGG
1 GAAGCCTTTGTGGCAAATTATAAAAAGAGAAGCCTTTGTGGCGAACTATGAAAAGG
* * *
59221217 GAAGCCTTTCTGG-AAATCTATAAGAAGGGAAGCCTTTGT
1 GAAGCCTTTGTGGCAAAT-TATAAAAAGAGAAGCCTTTGT
59221256 TGCAATCTAT
Statistics
Matches: 169, Mismatches: 30, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
54 9 0.05
55 71 0.42
56 78 0.46
57 11 0.07
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.27
Consensus pattern (56 bp):
GAAGCCTTTGTGGCAAATTATAAAAAGAGAAGCCTTTGTGGCGAACTATGAAAAGG
Found at i:59221142 original size:84 final size:83
Alignment explanation
Indices: 59220994--59221266 Score: 253
Period size: 83 Copynumber: 3.3 Consensus size: 83
59220984 TAGAAAAGAT
*
59220994 GAAGCCTTTTGTGGCAAACTATAAAAAGAGAAGCCTTTGTGGCGACCTATGAAAAGGGAAGCCTT
1 GAAGCC-TTTGTGGCAAACTATAAAAAGAGAAGCCTTTGTGGCGACATATGAAAAGGGAAGCCTT
* *
59221059 TGTGGTGAATTATAAAAAGG
65 TGTGGCG-ACTATAAAAAGG
* * * * * * * *
59221079 GAAGTCTTTGTGGCGATCTATGAAAAGGGAAGTCTTTGTGGCGATATATGAAAATGGAAGCCTTT
1 GAAGCCTTTGTGGCAAACTATAAAAAGAGAAGCCTTTGTGGCGACATATGAAAAGGGAAGCCTTT
* *
59221144 GTGGCGGCTATGAAAAGG
66 GTGGCGACTATAAAAAGG
* * * * * * * *
59221162 GAAGCCTTTGTGGAAAATTATAAAAAGAAAAGTCTTTCTAG-AAAATTAT-AAAAGGGAAGCCTT
1 GAAGCCTTTGTGGCAAACTATAAAAAGAGAAGCCTTTGTGGCGACA-TATGAAAAGGGAAGCCTT
* ** *
59221225 TCTGGAAATCTATAAGAAGG
65 TGTGGCGA-CTATAAAAAGG
* *
59221245 GAAGCCTTTGTTGCAATCTATA
1 GAAGCCTTTGTGGCAAACTATA
59221267 GATAGGGAAG
Statistics
Matches: 150, Mismatches: 36, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
82 19 0.13
83 70 0.47
84 56 0.37
85 5 0.03
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (83 bp):
GAAGCCTTTGTGGCAAACTATAAAAAGAGAAGCCTTTGTGGCGACATATGAAAAGGGAAGCCTTT
GTGGCGACTATAAAAAGG
Found at i:59226700 original size:19 final size:18
Alignment explanation
Indices: 59226676--59226718 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
59226666 GAAAAAACCC
*
59226676 TTTAAACTACTTTACTTTA
1 TTTAAACTAATTTA-TTTA
*
59226695 TTTAAAGTAATTTATTTA
1 TTTAAACTAATTTATTTA
*
59226713 GTTAAA
1 TTTAAA
59226719 TAAACCCCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (18 bp):
TTTAAACTAATTTATTTA
Found at i:59234009 original size:32 final size:32
Alignment explanation
Indices: 59233972--59234038 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
59233962 GAATAAAGAG
59233972 AATATTATACATCATAGGAAATAGTTTTCCCA
1 AATATTATACATCATAGGAAATAGTTTTCCCA
59234004 AATATTATACATCATAGGAAATAGTTTTCCCA
1 AATATTATACATCATAGGAAATAGTTTTCCCA
59234036 AAT
1 AAT
59234039 CTTGTTTAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.34
Consensus pattern (32 bp):
AATATTATACATCATAGGAAATAGTTTTCCCA
Found at i:59236002 original size:36 final size:37
Alignment explanation
Indices: 59235941--59236015 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 37
59235931 TAATTGAATA
*
59235941 ATTTCATTTAATTGGGATGTACTGATATTACAATAGT
1 ATTTCATTAAATTGGGATGTACTGATATTACAATAGT
59235978 ATTTCATTAAATT-GGATGTACTGATATTACAATAGT
1 ATTTCATTAAATTGGGATGTACTGATATTACAATAGT
59236014 AT
1 AT
59236016 CATCTATATC
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 25 0.68
37 12 0.32
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.43
Consensus pattern (37 bp):
ATTTCATTAAATTGGGATGTACTGATATTACAATAGT
Found at i:59238388 original size:17 final size:16
Alignment explanation
Indices: 59238350--59238397 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
59238340 TCACAAGTTC
*
59238350 TAAAATCCCCAACTCG
1 TAAAATCCCCAAATCG
* *
59238366 TTAAATTCCCCAAATGG
1 -TAAAATCCCCAAATCG
59238383 TAAAATCCCCAAATC
1 TAAAATCCCCAAATC
59238398 CATAACATTC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 13 0.50
17 13 0.50
ACGTcount: A:0.40, C:0.31, G:0.06, T:0.23
Consensus pattern (16 bp):
TAAAATCCCCAAATCG
Found at i:59238845 original size:117 final size:117
Alignment explanation
Indices: 59238639--59238963 Score: 526
Period size: 117 Copynumber: 2.8 Consensus size: 117
59238629 AGTTTGTTGA
* *
59238639 TTATTTGTGATTTATTATTGTAATTTCAGTGCCACAATGTAGGGTTTGTTTTGTCGATTTGTGAT
1 TTATTTGTGATTTATTATTGCAATTTCAGTGCCACAATGTAAGGTTTGTTTTGTCGATTTGTGAT
* * *
59238704 GCGACAGTGGTCCCAATGTTGTTGATAAAGTTGTTGTTAAACTTGTAGATGG
66 GCGACAGTGGTCCCGATGTTGTTGATAAAGCTGTTGTTAAAATTGTAGATGG
*
59238756 TTATTTGTGATTTATTATTGCAATTTCAGTGCCACAATGTAAGGTTTGTTTTGTCAATTTGTGAT
1 TTATTTGTGATTTATTATTGCAATTTCAGTGCCACAATGTAAGGTTTGTTTTGTCGATTTGTGAT
* * *
59238821 GCGACAATGGTCTCGATGTTGTTGATAAAGCTGTTGTTAAAATTGTATATGG
66 GCGACAGTGGTCCCGATGTTGTTGATAAAGCTGTTGTTAAAATTGTAGATGG
*
59238873 TTATTTGTGATTTATTATTGCAATTTTAGTGCCACAATGT-AGGTTTTGTTTTGTCGATTTGTGA
1 TTATTTGTGATTTATTATTGCAATTTCAGTGCCACAATGTAAGG-TTTGTTTTGTCGATTTGTGA
* *
59238937 TGTGACAGTGGTCCCGATGCTGTTGAT
65 TGCGACAGTGGTCCCGATGTTGTTGAT
59238964 TTCTGTTACC
Statistics
Matches: 192, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
116 3 0.02
117 189 0.98
ACGTcount: A:0.22, C:0.10, G:0.24, T:0.44
Consensus pattern (117 bp):
TTATTTGTGATTTATTATTGCAATTTCAGTGCCACAATGTAAGGTTTGTTTTGTCGATTTGTGAT
GCGACAGTGGTCCCGATGTTGTTGATAAAGCTGTTGTTAAAATTGTAGATGG
Found at i:59239493 original size:15 final size:15
Alignment explanation
Indices: 59239469--59239516 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 15
59239459 GGAGGGTGAT
*
59239469 GTTGAAGGGGTAGAA
1 GTTGATGGGGTAGAA
*
59239484 GTTGATGGGGAAGGTGAA
1 GTTGATGGGGTA---GAA
59239502 GTTGATGGGGTAGAA
1 GTTGATGGGGTAGAA
59239517 TCTTATGGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
15 13 0.48
18 14 0.52
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (15 bp):
GTTGATGGGGTAGAA
Found at i:59245596 original size:31 final size:32
Alignment explanation
Indices: 59245560--59245624 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
59245550 CTTAGATAAT
59245560 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
59245591 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
59245623 TT
1 TT
59245625 GTTATTTGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 9 0.27
32 24 0.73
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:59246199 original size:19 final size:19
Alignment explanation
Indices: 59246177--59246241 Score: 103
Period size: 19 Copynumber: 3.3 Consensus size: 19
59246167 AAAACAGAAT
59246177 AAAAAAGCAAAAAGCGCAA
1 AAAAAAGCAAAAAGCGCAA
59246196 AAAAAAGCAAAAAGCGCAAA
1 AAAAAAGCAAAAAGCGC-AA
*
59246216 AAAAGAAGCAAAAAGTGCAA
1 AAAA-AAGCAAAAAGCGCAA
59246236 AAAAAA
1 AAAAAA
59246242 AGTTGCCTAC
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
19 19 0.44
20 12 0.28
21 12 0.28
ACGTcount: A:0.71, C:0.12, G:0.15, T:0.02
Consensus pattern (19 bp):
AAAAAAGCAAAAAGCGCAA
Found at i:59246201 original size:21 final size:21
Alignment explanation
Indices: 59246177--59246242 Score: 100
Period size: 21 Copynumber: 3.2 Consensus size: 21
59246167 AAAACAGAAT
59246177 AAAAAAGCAAAAAGCGC--AA
1 AAAAAAGCAAAAAGCGCAAAA
59246196 AAAAAAGCAAAAAGCGCAAAA
1 AAAAAAGCAAAAAGCGCAAAA
* *
59246217 AAAGAAGCAAAAAGTGCAAAA
1 AAAAAAGCAAAAAGCGCAAAA
59246238 AAAAA
1 AAAAA
59246243 GTTGCCTACC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
19 17 0.40
21 25 0.60
ACGTcount: A:0.71, C:0.12, G:0.15, T:0.02
Consensus pattern (21 bp):
AAAAAAGCAAAAAGCGCAAAA
Found at i:59248183 original size:40 final size:40
Alignment explanation
Indices: 59248069--59248199 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
59248059 GTTAATTATA
* * *
59248069 CCTGAATTTCACATACGTGCCCCTATTTGTACTTCGATACC
1 CCTG-ATTGCACATACGTGCCCCTATTTGTACTTTGGTACC
* * * *
59248110 CCTAATTACACATACATGCCCCTGTTTGTACTTTGGTACC
1 CCTGATTGCACATACGTGCCCCTATTTGTACTTTGGTACC
* * *
59248150 CCTGATTGCACATACGTGCCCGTATTTTTACTTTAGTACC
1 CCTGATTGCACATACGTGCCCCTATTTGTACTTTGGTACC
59248190 CCTGATTGCA
1 CCTGATTGCA
59248200 AATATGTACC
Statistics
Matches: 77, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 74 0.96
41 3 0.04
ACGTcount: A:0.21, C:0.30, G:0.14, T:0.35
Consensus pattern (40 bp):
CCTGATTGCACATACGTGCCCCTATTTGTACTTTGGTACC
Found at i:59255517 original size:40 final size:40
Alignment explanation
Indices: 59255461--59255648 Score: 259
Period size: 40 Copynumber: 4.7 Consensus size: 40
59255451 GTTAATTATA
* * *
59255461 CCTGAATTGCACATACGTGCCCCTGTTTGTATTTTGGTATC
1 CCTG-ATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
* *
59255502 CCTGATTGCACATACGTGCCACTGTTTGTACTTCGATACC
1 CCTGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
* *
59255542 CCTGATTGCACATACGTGCCCTTGTTTGTACTTCGTTACC
1 CCTGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
** *
59255582 CCTGATTGCACATACACGCCCCTGTTTGTACTTTGGTACC
1 CCTGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
* *
59255622 CCAGATTGCACATACATGCCCCTGTTT
1 CCTGATTGCACATACGTGCCCCTGTTT
59255649 ACACTTCAGT
Statistics
Matches: 132, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
40 128 0.97
41 4 0.03
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.35
Consensus pattern (40 bp):
CCTGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
Found at i:59259721 original size:43 final size:43
Alignment explanation
Indices: 59259655--59259742 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
59259645 GATCGTACCC
59259655 AAGGGATTGTAGATTTGAAAAATTAATATTAAATTAATCACAT
1 AAGGGATTGTAGATTTGAAAAATTAATATTAAATTAATCACAT
* *
59259698 AAGGGATTGTAGATTTGAGAAATTAATATTAAATTAATTACAT
1 AAGGGATTGTAGATTTGAAAAATTAATATTAAATTAATCACAT
59259741 AA
1 AA
59259743 AATAATTACT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.47, C:0.03, G:0.15, T:0.35
Consensus pattern (43 bp):
AAGGGATTGTAGATTTGAAAAATTAATATTAAATTAATCACAT
Found at i:59266622 original size:13 final size:13
Alignment explanation
Indices: 59266604--59266630 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
59266594 ATAAAAGACA
59266604 TGAAAATTAATAT
1 TGAAAATTAATAT
59266617 TGAAAATTAATAT
1 TGAAAATTAATAT
59266630 T
1 T
59266631 CTTTTGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (13 bp):
TGAAAATTAATAT
Found at i:59267005 original size:279 final size:280
Alignment explanation
Indices: 59266612--59267211 Score: 903
Period size: 279 Copynumber: 2.2 Consensus size: 280
59266602 CATGAAAATT
*
59266612 AATAT-TGAAAATTAATATTCTTTTGGAAAGAATATAATT-A-ATATGAATTTGATTCATACAAA
1 AATATATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAA
* *
59266674 ATATTAATTGTATATTTTTTACCGAATTTATTAACATAAACAATTGTATTAATTAATTTCGGTCA
66 ATATTAATTGTATATATTTTACCGAATTTATTAACATAAACAATTATATTAATTAATTTCGGTCA
* * *
59266739 AAATGTAAAATACATGGAAATTAATATTCTTTTGGAAAGAATATAA-T-TA-ATATATGAATTTG
131 AAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTATATATATATGAATTTG
** *
59266801 ATTCATACAAAAT-ATTATTTGTTTATATATTTTTACT-AAATTTATTAATATAAACAGTTATAT
196 ATTCATACAAAATAATTAAATG--TATATA-TTTTA-TGAAATTTATTAATATAAACAATTATAT
59266864 TAATTAATTTCGATCAAAATATAA
257 TAATTAATTTCGATCAAAATATAA
* *
59266888 AATATATGGAAATTAATATTCTTTTGAAAATAATATAATTAATATATGAATTTGATTCATACAAA
1 AATATATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAA
* *
59266953 ATATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTTGGTCA
66 ATATTAATTGTATATATTTTACCGAATTTATTAACATAAACAATTATATTAATTAATTTCGGTCA
*
59267018 AAATATAAAAGAGATGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATATATGAATTT
131 AAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATT-ATATATATATGAATTT
* *
59267083 GATTCATAGAATATAATTAAATGTATATATTTTATGAAATTTATTAATATAAACAATTATATTAA
195 GATTCATACAAAATAATTAAATGTATATATTTTATGAAATTTATTAATATAAACAATTATATTAA
*
59267148 TTAATTTCGGTCAAAATATAA
260 TTAATTTCGATCAAAATATAA
* * *
59267169 AAGACAT-GATAATTAATATTCTTTTGGAAAGAATAAAATTAAT
1 AATATATGGA-AATTAATATTCTTTTGGAAAGAATATAATTAAT
59267212 TTTTCTAACT
Statistics
Matches: 292, Mismatches: 22, Indels: 15
0.89 0.07 0.05
Matches are distributed among these distances:
276 5 0.02
277 31 0.11
278 1 0.00
279 125 0.43
280 4 0.01
281 88 0.30
282 8 0.03
283 24 0.08
284 6 0.02
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.41
Consensus pattern (280 bp):
AATATATGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAA
ATATTAATTGTATATATTTTACCGAATTTATTAACATAAACAATTATATTAATTAATTTCGGTCA
AAATATAAAAGACATGAAAATTAATATTCTTTTGGAAAGAATATAATTATATATATATGAATTTG
ATTCATACAAAATAATTAAATGTATATATTTTATGAAATTTATTAATATAAACAATTATATTAAT
TAATTTCGATCAAAATATAA
Found at i:59267047 original size:138 final size:138
Alignment explanation
Indices: 59266617--59267211 Score: 872
Period size: 141 Copynumber: 4.3 Consensus size: 138
59266607 AAATTAATAT
59266617 TGAAAATTAATATTCTTTTGGAAAGAATATAATT-A-ATATGAATTTGATTCATACAAAATATTA
1 TGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTA
* * * *
59266680 ATTGTATATTTTTTACCGAATTTATTAACATAAACAATTGTATTAATTAATTTCGGTCAAAATGT
66 ATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAAATAT
*
59266745 AAAATACA
131 AAAAGACA
*
59266753 TGGAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTA
1 TGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTA
* ** * *
59266818 TTTGTTTATATATTTTTACTAAATTTATTAATATAAACAGTTATATTAATTAATTTCGATCAAAA
66 ATTG--TATATA-TTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAAA
* *
59266883 TATAAAATATA
128 TATAAAAGACA
* * *
59266894 TGGAAATTAATATTCTTTTGAAAATAATATAATTAATATATGAATTTGATTCATACAAAATATTA
1 TGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTA
*
59266959 ATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTTGGTCAAAATAT
66 ATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAAATAT
*
59267024 AAAAGAGA
131 AAAAGACA
* *
59267032 TGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATATATGAATTTGATTCATAGAATAT
1 TGAAAATTAATATTCTTTTGGAAAGAATATAA-T--TA-ATATATGAATTTGATTCATACAAAAT
* *
59267097 AATTAAATGTATATATTTTA-TGAAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCA
62 -ATTAATTGTATATATTTTACCG-AATTTATTAATATAAACAATTATATTAATTAATTTCGGTCA
59267161 AAATATAAAAGACA
125 AAATATAAAAGACA
* *
59267175 TGATAATTAATATTCTTTTGGAAAGAATAAAATTAAT
1 TGAAAATTAATATTCTTTTGGAAAGAATATAATTAAT
59267212 TTTTCTAACT
Statistics
Matches: 416, Mismatches: 32, Indels: 19
0.89 0.07 0.04
Matches are distributed among these distances:
136 33 0.08
137 1 0.00
138 116 0.28
139 9 0.02
140 7 0.02
141 123 0.30
142 26 0.06
143 101 0.24
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (138 bp):
TGAAAATTAATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTA
ATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTCGGTCAAAATAT
AAAAGACA
Found at i:59267311 original size:75 final size:75
Alignment explanation
Indices: 59267184--59267331 Score: 242
Period size: 75 Copynumber: 2.0 Consensus size: 75
59267174 ATGATAATTA
* * *
59267184 ATATTCTTTTGGAAAGAATAAAATTAATTTTTCTAACTTTTCATTTGTCTTCTCTATTAATAAGG
1 ATATTCTTTTGAAAAGAATAAAATTAATTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGG
59267249 GAATAATCTT
66 GAATAATCTT
** *
59267259 ATATTCTTTTGAAAAGAATGTAATTCATTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGG
1 ATATTCTTTTGAAAAGAATAAAATTAATTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGG
59267324 GAATAATC
66 GAATAATC
59267332 ATGATTTTCT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 67 1.00
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.45
Consensus pattern (75 bp):
ATATTCTTTTGAAAAGAATAAAATTAATTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGG
GAATAATCTT
Found at i:59273952 original size:30 final size:30
Alignment explanation
Indices: 59273918--59274113 Score: 150
Period size: 30 Copynumber: 6.6 Consensus size: 30
59273908 AACCGAAGCT
59273918 ATCCCTTTTCATTATTTGATAGTCGTCACC
1 ATCCCTTTTCATTATTTGATAGTCGTCACC
* *
59273948 ATCCCTTTTCATT-GTTGATGGTCGTCACC
1 ATCCCTTTTCATTATTTGATAGTCGTCACC
* * *
59273977 ATCCCTTCTCATAATTTGATAG-CAG-AAGCTC
1 ATCCCTTTTCATTATTTGATAGTC-GTCA-C-C
* * ** * * *
59274008 -TCCATTTTTACAATTGGATAGCCG-AAGCC
1 ATCCCTTTTCATTATTTGATAGTCGTCA-CC
* * * *
59274037 ATCCCTTTTCATTGTTCGATGGTCATCACC
1 ATCCCTTTTCATTATTTGATAGTCGTCACC
* *
59274067 ATCCCTTTTCATTATTTAATGGTCGTCACC
1 ATCCCTTTTCATTATTTGATAGTCGTCACC
*
59274097 ATCCCTTTTCATAATTT
1 ATCCCTTTTCATTATTT
59274114 AATAACCTCC
Statistics
Matches: 132, Mismatches: 27, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
29 28 0.21
30 101 0.77
31 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.40
Consensus pattern (30 bp):
ATCCCTTTTCATTATTTGATAGTCGTCACC
Found at i:59276119 original size:13 final size:13
Alignment explanation
Indices: 59276101--59276128 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
59276091 AGCTTCCTGT
59276101 AATACTAAAATGC
1 AATACTAAAATGC
59276114 AATACTAAAATGC
1 AATACTAAAATGC
59276127 AA
1 AA
59276129 CAGTGTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AATACTAAAATGC
Found at i:59284565 original size:40 final size:40
Alignment explanation
Indices: 59284521--59284784 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
59284511 GCTCCTCGTT
* *
59284521 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
59284561 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
59284601 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
59284641 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
59284681 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
59284720 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
59284761 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
59284785 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:59292580 original size:40 final size:40
Alignment explanation
Indices: 59292536--59292797 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
59292526 GCTCCTCGTT
* *
59292536 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
59292576 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
59292616 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
59292655 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
59292694 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
59292733 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
59292774 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
59292798 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:59295286 original size:27 final size:27
Alignment explanation
Indices: 59295249--59295418 Score: 250
Period size: 27 Copynumber: 6.3 Consensus size: 27
59295239 ACACGCTAGA
* *
59295249 AAAGGAATGGCTTTTTGGCAATATATG
1 AAAGGAATGCCTTTGTGGCAATATATG
* *
59295276 AAAGGATTGGCTTTGTGGCAATATATG
1 AAAGGAATGCCTTTGTGGCAATATATG
*
59295303 AAAGGAACGCCTTTGTGGCAATATATG
1 AAAGGAATGCCTTTGTGGCAATATATG
* **
59295330 AAAGGAATGCCTTTTTCACAATATATG
1 AAAGGAATGCCTTTGTGGCAATATATG
* *
59295357 AAAGGAATTCCTTTGTGGTAATATATG
1 AAAGGAATGCCTTTGTGGCAATATATG
59295384 AAAGGAATGCCTTTGTGGCAATATATG
1 AAAGGAATGCCTTTGTGGCAATATATG
59295411 AAAGGAAT
1 AAAGGAAT
59295419 ACCTAATCTA
Statistics
Matches: 127, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.31
Consensus pattern (27 bp):
AAAGGAATGCCTTTGTGGCAATATATG
Found at i:59296934 original size:51 final size:51
Alignment explanation
Indices: 59296870--59297061 Score: 230
Period size: 51 Copynumber: 3.8 Consensus size: 51
59296860 TATCGATGGA
*
59296870 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTGAT
* * * * *
59296921 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAAGCTTTTG-T
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA--TATTGAT
* * * *
59296972 CACGTGTGTAGTACCATGTGAAGGCTACTATGTG-AACCATAAA-ACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA-TTGAT
*
59297022 CACGTGTGTAGTATTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
59297062 ATGATAATAG
Statistics
Matches: 118, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
49 3 0.03
50 38 0.32
51 74 0.63
52 3 0.03
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTGAT
Found at i:59296954 original size:26 final size:26
Alignment explanation
Indices: 59296874--59296956 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
59296864 GATGGACACG
*
59296874 TGTGTAGTACTATGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
* * * *
59296900 CGTGTA-T-CGATAAAT-AATGATCAC-A
1 TGTGTAGTAC--TAAGTGAAGGCT-ACTA
59296925 TGTGTAGTACTAAGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
59296951 TGTGTA
1 TGTGTA
59296957 CCGAAAAGCT
Statistics
Matches: 41, Mismatches: 9, Indels: 14
0.64 0.14 0.22
Matches are distributed among these distances:
24 1 0.02
25 17 0.41
26 22 0.54
27 1 0.02
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGAAGGCTACTA
Found at i:59297046 original size:101 final size:102
Alignment explanation
Indices: 59296870--59297062 Score: 273
Period size: 101 Copynumber: 1.9 Consensus size: 102
59296860 TATCGATGGA
* * *
59296870 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGATCACATGTGTAGTAC
1 CACGTGTGTAGTACCATGTGAAGGCTACTACGTGTAACCATAAATAATGATCACATGTGTAGTAC
*
59296935 TAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTTGT
66 TAAGTGAAGGCTACTACGTGTACCGAAAAGCTTTTGT
* * *
59296972 CACGTGTGTAGTACCATGTGAAGGCTACTATGTG-AACCATAAA-ACTTGATCACGTGTGTAGTA
1 CACGTGTGTAGTACCATGTGAAGGCTACTACGTGTAACCATAAATA-ATGATCACATGTGTAGTA
* * *
59297035 TTATGTGAAGGCTACTACGTGTATCGAA
65 CTAAGTGAAGGCTACTACGTGTACCGAA
59297063 TGATAATAGT
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
100 1 0.01
101 47 0.59
102 32 0.40
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (102 bp):
CACGTGTGTAGTACCATGTGAAGGCTACTACGTGTAACCATAAATAATGATCACATGTGTAGTAC
TAAGTGAAGGCTACTACGTGTACCGAAAAGCTTTTGT
Found at i:59297092 original size:101 final size:102
Alignment explanation
Indices: 59296874--59297094 Score: 234
Period size: 101 Copynumber: 2.2 Consensus size: 102
59296864 GATGGACACG
* *
59296874 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGATCACATGTGTAGTACTAAG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTAACCATAAATAATGATCACATGTGTAGTACTAAG
* * * * * *
59296939 TGAAGGCTACTATGTGTACCGAAAAGCTTTTGTCACG
66 TGAAGGCTACTACGTGTACCGAAAAGATATAGTAACA
* * * * * *
59296976 TGTGTAGTACCATGTGAAGGCTACTATGTG-AACCATAAA-ACTTGATCACGTGTGTAGTATTAT
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTAACCATAAATA-ATGATCACATGTGTAGTACTAA
* *
59297039 GTGAAGGCTACTACGTGTATCG-AATGATAATAGTAACA
65 GTGAAGGCTACTACGTGTACCGAAAAGAT-ATAGTAACA
*
59297077 TAG-GTGGTACTATGTGAA
1 T-GTGTAGTACTATGTGAA
59297095 AACCCCTAAA
Statistics
Matches: 98, Mismatches: 18, Indels: 7
0.80 0.15 0.06
Matches are distributed among these distances:
100 5 0.05
101 64 0.65
102 29 0.30
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (102 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTAACCATAAATAATGATCACATGTGTAGTACTAAG
TGAAGGCTACTACGTGTACCGAAAAGATATAGTAACA
Found at i:59304463 original size:51 final size:51
Alignment explanation
Indices: 59304394--59304587 Score: 198
Period size: 51 Copynumber: 3.8 Consensus size: 51
59304384 TAAAGTATCG
* * * *
59304394 ATGAACACGTGTGTAGTACTATGTGAAGGCTAGTACGTGTATCGATAAATA
1 ATGATCACATGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAAATA
* * * *
59304445 ATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTA-CCAAAAAGCT-
1 ATGATCACATGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAAA--TA
* ** * *
59304496 TTTTTCACATGTGTAGTACTATGTGAAGGCTACTATGTGAACCG-TAAA-A
1 ATGATCACATGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAAATA
* *
59304545 CGTGATCACGTGTGTAGTACTATGTGAAGGCTACTATGTGTAT
1 -ATGATCACATGTGTAGTACTATGTGAAGGCTACTATGTGTAT
59304588 TGAATGATAA
Statistics
Matches: 117, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
50 41 0.35
51 74 0.63
52 2 0.02
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (51 bp):
ATGATCACATGTGTAGTACTATGTGAAGGCTACTATGTGTATCGATAAATA
Found at i:59304579 original size:101 final size:102
Alignment explanation
Indices: 59304403--59304586 Score: 273
Period size: 101 Copynumber: 1.8 Consensus size: 102
59304393 GATGAACACG
* * * *
59304403 TGTGTAGTACTATGTGAAGGCTAGTACGTGTATCGATAAATAATGGTCACATGTGTAGTACTAAG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATAATGATCACATGTGTAGTACTAAG
59304468 TGAAGGCTACTATGTGTACCAAAAAGCTTTTTTCACA
66 TGAAGGCTACTATGTGTACCAAAAAGCTTTTTTCACA
* * * *
59304505 TGTGTAGTACTATGTGAAGGCTACTATGTGAACCG-TAAA-ACGTGATCACGTGTGTAGTACTAT
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATA-ATGATCACATGTGTAGTACTAA
59304568 GTGAAGGCTACTATGTGTA
65 GTGAAGGCTACTATGTGTA
59304587 TTGAATGATA
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
100 1 0.01
101 41 0.56
102 31 0.42
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (102 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATAATGATCACATGTGTAGTACTAAG
TGAAGGCTACTATGTGTACCAAAAAGCTTTTTTCACA
Found at i:59304607 original size:101 final size:102
Alignment explanation
Indices: 59304403--59304623 Score: 241
Period size: 101 Copynumber: 2.2 Consensus size: 102
59304393 GATGAACACG
* * * *
59304403 TGTGTAGTACTATGTGAAGGCTAGTACGTGTATCGATAAATAATGGTCACATGTGTAGTACTAAG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATAATGATCACATGTGTAGTACTAAG
* * * *
59304468 TGAAGGCTACTATGTGTACCAAAAAGCTTTTTTCACA
66 TGAAGGCTACTATGTGTACCAAAAAGATATATTAACA
* * * *
59304505 TGTGTAGTACTATGTGAAGGCTACTATGTGAACCG-TAAA-ACGTGATCACGTGTGTAGTACTAT
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATA-ATGATCACATGTGTAGTACTAA
*** *
59304568 GTGAAGGCTACTATGTGTA-TTGAATGATAATATTAACA
65 GTGAAGGCTACTATGTGTACCAAAAAGAT-ATATTAACA
* *
59304606 TGGGTGGTACTATGTGAA
1 TGTGTAGTACTATGTGAA
59304624 AACCCCCAAA
Statistics
Matches: 99, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
100 5 0.05
101 63 0.64
102 31 0.31
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (102 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGATAAATAATGATCACATGTGTAGTACTAAG
TGAAGGCTACTATGTGTACCAAAAAGATATATTAACA
Found at i:59309008 original size:25 final size:25
Alignment explanation
Indices: 59308976--59309055 Score: 115
Period size: 25 Copynumber: 3.2 Consensus size: 25
59308966 TCAGAGAGTT
59308976 ACACGGCCTGGCACATAGGCGTGTG
1 ACACGGCCTGGCACATAGGCGTGTG
* *
59309001 ACATGGCCTGGCACACAGGCGTGTG
1 ACACGGCCTGGCACATAGGCGTGTG
* * *
59309026 ACACGGCTTGGCTCATGGGCGTGTG
1 ACACGGCCTGGCACATAGGCGTGTG
59309051 ACACG
1 ACACG
59309056 ACCGTCTGAC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.19, C:0.28, G:0.36, T:0.17
Consensus pattern (25 bp):
ACACGGCCTGGCACATAGGCGTGTG
Found at i:59309325 original size:20 final size:20
Alignment explanation
Indices: 59309300--59309340 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
59309290 GGCTTCGAGG
59309300 GCTTGATTTAGAGATGGTAT
1 GCTTGATTTAGAGATGGTAT
*
59309320 GCTTGATTTAGAGATTGTAT
1 GCTTGATTTAGAGATGGTAT
59309340 G
1 G
59309341 TATGTCTATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.05, G:0.29, T:0.41
Consensus pattern (20 bp):
GCTTGATTTAGAGATGGTAT
Found at i:59318936 original size:22 final size:21
Alignment explanation
Indices: 59318909--59318952 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
59318899 AGTTAATGGA
*
59318909 GTTTTAAGG-ATAAAAATAAGG
1 GTTTTTAGGTATAAAAAT-AGG
*
59318930 GTTTTTAGGTTTAAAAATAGG
1 GTTTTTAGGTATAAAAATAGG
59318951 GT
1 GT
59318953 GAAATAAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (21 bp):
GTTTTTAGGTATAAAAATAGG
Found at i:59324630 original size:32 final size:32
Alignment explanation
Indices: 59324593--59324779 Score: 241
Period size: 32 Copynumber: 5.8 Consensus size: 32
59324583 CCACAAGTAC
* *
59324593 AGTAATATGATTGGCACAAAGCCATCAGTAGT
1 AGTAATATGATCGGCACAAAGCCATCAGTAAT
*
59324625 AGTAATATGATCGGCACATAGCCATCAGTAAT
1 AGTAATATGATCGGCACAAAGCCATCAGTAAT
* * * *
59324657 AGTAGTATGATCGGTACAAAGCCATCAATAGT
1 AGTAATATGATCGGCACAAAGCCATCAGTAAT
59324689 AGTAATATGATCGGCACACAA-CCATCAGTAAT
1 AGTAATATGATCGGCACA-AAGCCATCAGTAAT
* * * *
59324721 GGTAATATGATCGGTACATAGCCATTAGTAAT
1 AGTAATATGATCGGCACAAAGCCATCAGTAAT
* *
59324753 GGTAATATGATTGGCACAAAGCCATCA
1 AGTAATATGATCGGCACAAAGCCATCA
59324780 ATAGCATCGT
Statistics
Matches: 133, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
31 1 0.01
32 130 0.98
33 2 0.02
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.25
Consensus pattern (32 bp):
AGTAATATGATCGGCACAAAGCCATCAGTAAT
Found at i:59324762 original size:96 final size:96
Alignment explanation
Indices: 59324593--59324783 Score: 285
Period size: 96 Copynumber: 2.0 Consensus size: 96
59324583 CCACAAGTAC
* *
59324593 AGTAATATGATTGGCACAAAGCCATCAGTAGTAGTAATATGATCGGCACATAGCCATCAGTAATA
1 AGTAATATGATCGGCACAAAGCCATCAGTAATAGTAATATGATCGGCACATAGCCATCAGTAATA
* *
59324658 GTAGTATGATCGGTACAAAGCCATCAATAGT
66 GTAATATGATCGGCACAAAGCCATCAATAGT
* * *
59324689 AGTAATATGATCGGCACACAA-CCATCAGTAATGGTAATATGATCGGTACATAGCCATTAGTAAT
1 AGTAATATGATCGGCACA-AAGCCATCAGTAATAGTAATATGATCGGCACATAGCCATCAGTAAT
* *
59324753 GGTAATATGATTGGCACAAAGCCATCAATAG
65 AGTAATATGATCGGCACAAAGCCATCAATAG
59324784 CATCGTAGTA
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
96 83 0.98
97 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (96 bp):
AGTAATATGATCGGCACAAAGCCATCAGTAATAGTAATATGATCGGCACATAGCCATCAGTAATA
GTAATATGATCGGCACAAAGCCATCAATAGT
Found at i:59325025 original size:23 final size:23
Alignment explanation
Indices: 59324970--59325036 Score: 62
Period size: 23 Copynumber: 2.9 Consensus size: 23
59324960 TCACTCAAAT
* **
59324970 CACAGACAAATCAGTCATACCAAA
1 CACAGACAAAACAGTCAT-TTAAA
* * *
59324994 CACAAACAAACCAGTCATTTAAC
1 CACAGACAAAACAGTCATTTAAA
*
59325017 CACAGACAAAACAATCATTT
1 CACAGACAAAACAGTCATTT
59325037 GACCTTGAGG
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
23 19 0.54
24 16 0.46
ACGTcount: A:0.49, C:0.28, G:0.06, T:0.16
Consensus pattern (23 bp):
CACAGACAAAACAGTCATTTAAA
Found at i:59327436 original size:10 final size:10
Alignment explanation
Indices: 59327410--59327460 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
59327400 TTTAACTTAG
*
59327410 TTCAGCTCAC
1 TTCAGCTCAA
*
59327420 TTGAGCTCAA
1 TTCAGCTCAA
*
59327430 GTCAGCTC-A
1 TTCAGCTCAA
59327439 TTCGAGCTCAA
1 TTC-AGCTCAA
59327450 TTCAGCTCAA
1 TTCAGCTCAA
59327460 T
1 T
59327461 CTTAACCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
9 3 0.09
10 27 0.79
11 4 0.12
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (10 bp):
TTCAGCTCAA
Found at i:59327436 original size:20 final size:20
Alignment explanation
Indices: 59327411--59327458 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
59327401 TTAACTTAGT
59327411 TCAGCTCACTT-GAGCTCAAG
1 TCAGCTCA-TTCGAGCTCAAG
*
59327431 TCAGCTCATTCGAGCTCAAT
1 TCAGCTCATTCGAGCTCAAG
59327451 TCAGCTCA
1 TCAGCTCA
59327459 ATCTTAACCC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 2 0.08
20 24 0.92
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (20 bp):
TCAGCTCATTCGAGCTCAAG
Found at i:59333087 original size:13 final size:13
Alignment explanation
Indices: 59333069--59333093 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59333059 ATGAATTTGG
59333069 CCCATTGTAATTA
1 CCCATTGTAATTA
59333082 CCCATTGTAATT
1 CCCATTGTAATT
59333094 GGACTTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (13 bp):
CCCATTGTAATTA
Found at i:59333836 original size:129 final size:129
Alignment explanation
Indices: 59333659--59333943 Score: 462
Period size: 129 Copynumber: 2.2 Consensus size: 129
59333649 ATCCTCAAGG
* * * * *
59333659 AGATGAGATTTGCCATCTTCGATTTGCCCCACTGCAACTTTAGAGGGATAAGACCTGCTTACTTA
1 AGATAAGATTCGCCGTCTTCGATCTGCCCCACTGCAACTTCAGAGGGATAAGACCTGCTTACTTA
59333724 GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTAAACTTGA
66 GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTAAACTTGA
* * *
59333788 AGATAAGATTCGCCGTCTTCGATCTGTCCCACTGTAACTTCAGGGGGATAAGACCTGCTTACTTA
1 AGATAAGATTCGCCGTCTTCGATCTGCCCCACTGCAACTTCAGAGGGATAAGACCTGCTTACTTA
* * *
59333853 GCCTGCTCCACTGCAACCTCAGGGAGAAATGACTTGTGGCTTAAATCTGTTTCCTTACACTTGA
66 GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTAAACTTGA
*
59333917 AGATAAGATTCACCGTCTTCGATCTGC
1 AGATAAGATTCGCCGTCTTCGATCTGC
59333944 TTTGCCGTCA
Statistics
Matches: 143, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
129 143 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (129 bp):
AGATAAGATTCGCCGTCTTCGATCTGCCCCACTGCAACTTCAGAGGGATAAGACCTGCTTACTTA
GCCTGCTCCACTGCAACCTCAGGGAGAAAGGACTTGTGGCTTAAATCTGCTTCCTTAAACTTGA
Found at i:59334237 original size:87 final size:88
Alignment explanation
Indices: 59333931--59334352 Score: 458
Period size: 87 Copynumber: 4.8 Consensus size: 88
59333921 AAGATTCACC
** * * ** *
59333931 GTCTTCGATCTGCTTTGCCGTCAGTATAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTG
1 GTCTTCGATCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCCGCTCCACTG
*
59333996 TAACTGAGGGAGGCGAA-GCTGGT
66 CAACTGAGGGAGGC-AAGGCTGGT
* * * * **
59334019 GTCTTCGATCTGCTTTACTGTCTACGCAGGAAGGCAAGATCTGTTAT-TTGCAACCTACTCCACT
1 GTCTTCGATCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTGCTATCTT-CAACCCGCTCCACT
* * *
59334083 GCAACCGAGGGGGGCAAGGCTGGG
65 GCAACTGAGGGAGGCAAGGCTGGT
* * * *
59334107 GTCTTCAATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTG
1 GTCTTCGATCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCCGCTCCACTG
* * *
59334172 CAA-TCGAGGAAGGCAAGTCT-TT
66 CAACT-GAGGGAGGCAAGGCTGGT
* * * * * *
59334194 GTTTTTGATCTGTTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCCACTCCACTG
1 GTCTTCGATCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCCGCTCCACTG
* *
59334259 CAACTGATGGAGGCAAGGCT-TT
66 CAACTGAGGGAGGCAAGGCTGGT
* * * *
59334281 GTTTTCGATTTGCTTCACTGTCAATGTAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTG
1 GTCTTCGATCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCCGCTCCACTG
59334346 CAACTGA
66 CAACTGA
59334353 ACTTTATTTT
Statistics
Matches: 281, Mismatches: 48, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
87 142 0.51
88 137 0.49
89 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (88 bp):
GTCTTCGATCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCCGCTCCACTG
CAACTGAGGGAGGCAAGGCTGGT
Found at i:59334278 original size:175 final size:175
Alignment explanation
Indices: 59333958--59334352 Score: 503
Period size: 175 Copynumber: 2.3 Consensus size: 175
59333948 CCGTCAGTAT
* * * *
59333958 AGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTGTAACTGAGGGAGGCGAAGCTGGTGTCT
1 AGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAACTGAGGAAGGCGAAGCTGGTGTCT
* * *
59334023 TCGATCTGCTTTACTGTCTACGCAGGAAGGCAAGATCTGTTATTTGCAACCTACTCCACTGCAAC
66 TCGATCTGCTTTACTGTCGACGCAGGAAGGCAAGATCTGCTATTTGCAACCCACTCCACTGCAAC
* * *
59334088 CGAGGGGGGCAAGGCTGGGGTCTTCAATCTGCTTCGCTGTTAATGC
131 CGAGGGAGGCAAGGCT-GGGTCTTCAATCTGCTTCACTGTCAATGC
*
59334134 AGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAA-TCGAGGAAGGC-AAGTCT-TTGT
1 AGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAACT-GAGGAAGGCGAAG-CTGGTGT
* * * *
59334196 TTTTGATCTG-TTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTT-CAACCCACTCCACTG
64 CTTCGATCTGCTTT-ACTGTCGACGCAGGAAGGCAAGATCTGCTAT-TTGCAACCCACTCCACTG
* * ** * * * *
59334259 CAACTGATGGAGGCAAGGCTTTGTTTTCGATTTGCTTCACTGTCAATGT
127 CAACCGAGGGAGGCAAGGCTGGGTCTTCAATCTGCTTCACTGTCAATGC
59334308 AGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAACTGA
1 AGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAACTGA
59334353 ACTTTATTTT
Statistics
Matches: 191, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
174 67 0.35
175 74 0.39
176 50 0.26
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (175 bp):
AGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGCAACTGAGGAAGGCGAAGCTGGTGTCT
TCGATCTGCTTTACTGTCGACGCAGGAAGGCAAGATCTGCTATTTGCAACCCACTCCACTGCAAC
CGAGGGAGGCAAGGCTGGGTCTTCAATCTGCTTCACTGTCAATGC
Found at i:59335291 original size:20 final size:20
Alignment explanation
Indices: 59335243--59335291 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
59335233 TTTAACTTAG
*
59335243 TTCAGCTCACTCGAGCTCAA
1 TTCAGCTCACTCAAGCTCAA
* * *
59335263 GTCATCTCATTCAAGCTCAA
1 TTCAGCTCACTCAAGCTCAA
59335283 TTCAGCTCA
1 TTCAGCTCA
59335292 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.29
Consensus pattern (20 bp):
TTCAGCTCACTCAAGCTCAA
Found at i:59337103 original size:56 final size:55
Alignment explanation
Indices: 59337028--59337138 Score: 186
Period size: 56 Copynumber: 2.0 Consensus size: 55
59337018 AAATTAAGTC
* *
59337028 TACATGAGACGAATTACGAAATTGTGAGAGAAAGAATTGAGTGGTAAAAGGAAAG
1 TACATGAGACGAATGACGAAATTGTGAGAGAAAGAATTGAGTGGGAAAAGGAAAG
*
59337083 NTACATGAGATGAATGACGAAATTGTGAGAGAAAGAATTGAGTGGGAAAAGGAAAG
1 -TACATGAGACGAATGACGAAATTGTGAGAGAAAGAATTGAGTGGGAAAAGGAAAG
59337139 AGTGAGTGAG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.45, C:0.05, G:0.31, T:0.19
Consensus pattern (55 bp):
TACATGAGACGAATGACGAAATTGTGAGAGAAAGAATTGAGTGGGAAAAGGAAAG
Found at i:59338953 original size:47 final size:47
Alignment explanation
Indices: 59338894--59338992 Score: 162
Period size: 47 Copynumber: 2.1 Consensus size: 47
59338884 AGAGGGTCCC
* *
59338894 AGAGTCTGAAACTTCCCATTTGTAAAAGTTACGGGAATAACCATATG
1 AGAGTCTAAAACTTCCCATTGGTAAAAGTTACGGGAATAACCATATG
* *
59338941 AGAGTCTAAAACTTCCCATTGGTAAAAGTTGCTGGAATAACCATATG
1 AGAGTCTAAAACTTCCCATTGGTAAAAGTTACGGGAATAACCATATG
59338988 AGAGT
1 AGAGT
59338993 ATCCTAGAAG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.27
Consensus pattern (47 bp):
AGAGTCTAAAACTTCCCATTGGTAAAAGTTACGGGAATAACCATATG
Found at i:59342002 original size:5 final size:6
Alignment explanation
Indices: 59341950--59342007 Score: 53
Period size: 6 Copynumber: 9.2 Consensus size: 6
59341940 ACCAATTTAG
* * * *
59341950 TTTATC TTTATT TTTCCTT TTTATT TCTATT TGTAATGT TTTATT TTTATT
1 TTTATT TTTATT TTT-ATT TTTATT TTTATT T-TTAT-T TTTATT TTTATT
59342001 TTTATT T
1 TTTATT T
59342008 GAATTCCAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
6 30 0.71
7 10 0.24
8 2 0.05
ACGTcount: A:0.16, C:0.07, G:0.03, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:59342046 original size:3 final size:3
Alignment explanation
Indices: 59342032--59342077 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
59342022 TTTTTAATAC
* * *
59342032 TAT TAT TGT TAT TAT TGT TAT TAT TGT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
59342078 CCTTTTTTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:59342077 original size:9 final size:9
Alignment explanation
Indices: 59342032--59342074 Score: 77
Period size: 9 Copynumber: 4.8 Consensus size: 9
59342022 TTTTTAATAC
59342032 TATTATTGT
1 TATTATTGT
59342041 TATTATTGT
1 TATTATTGT
59342050 TATTATTGT
1 TATTATTGT
*
59342059 TATTATTAT
1 TATTATTGT
59342068 TATTATT
1 TATTATT
59342075 ATTCCTTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (9 bp):
TATTATTGT
Found at i:59355886 original size:27 final size:27
Alignment explanation
Indices: 59355855--59356032 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
59355845 TAAATTGTAC
59355855 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
59355882 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
59355908 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
59355936 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
59355964 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
59355991 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
59356018 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
59356033 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:59355969 original size:82 final size:81
Alignment explanation
Indices: 59355856--59356011 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
59355846 AAATTGTACA
* *
59355856 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
59355920 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
59355937 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
59356002 TGCGAGTTGA
65 TGCGAATTGA
59356012 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:59356023 original size:82 final size:81
Alignment explanation
Indices: 59355852--59356032 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
59355842 GATTAAATTG
* *
59355852 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
59355917 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
59355933 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
59355997 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
59356015 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
59356033 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:59362915 original size:20 final size:20
Alignment explanation
Indices: 59362890--59362929 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
59362880 CACTGCTGCT
59362890 GTCAGCATCTGCCTTTAAGG
1 GTCAGCATCTGCCTTTAAGG
59362910 GTCAGCATCTGCCTTTAAGG
1 GTCAGCATCTGCCTTTAAGG
59362930 TAGACTTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (20 bp):
GTCAGCATCTGCCTTTAAGG
Found at i:59363397 original size:22 final size:24
Alignment explanation
Indices: 59363372--59363427 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 24
59363362 AAGTATAGCA
59363372 TTCATAT-A-ACTAAACGGATAAT
1 TTCATATAATACTAAACGGATAAT
59363394 TTCATATACACATACTAAACGGATAAT
1 TTCATAT--A-ATACTAAACGGATAAT
59363421 TTCATAT
1 TTCATAT
59363428 GCACAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
22 7 0.24
26 1 0.03
27 21 0.72
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (24 bp):
TTCATATAATACTAAACGGATAAT
Found at i:59363418 original size:27 final size:27
Alignment explanation
Indices: 59363380--59363432 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
59363370 CATTCATATA
59363380 ACTAAACGGATAATTTCATATACACAT
1 ACTAAACGGATAATTTCATATACACAT
*
59363407 ACTAAACGGATAATTTCATATGCACA
1 ACTAAACGGATAATTTCATATACACA
59363433 AATTTTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.28
Consensus pattern (27 bp):
ACTAAACGGATAATTTCATATACACAT
Found at i:59363715 original size:40 final size:40
Alignment explanation
Indices: 59363666--59363855 Score: 165
Period size: 39 Copynumber: 4.8 Consensus size: 40
59363656 CAGAATTTAA
** *
59363666 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGGACAAATGCCTTCGGGACATAAC
* *
59363706 CCGGTTATAGTAACTCGGACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGGACAAATGCCTTCGGGACATAAC
* * * * *
59363746 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGGACAAATGCCTTCGGGACATAAC
* * * * *
59363785 CTGGA-ATTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATA-TAGTAACTCGGACAAATGCCTTCGGGACATAAC
* *
59363824 CC-GAAATTAGTAACTCGCACAAATGCCTTCGG
1 CCGGATA-TAGTAACTCGGACAAATGCCTTCGG
59363856 ATCTTAGTCC
Statistics
Matches: 133, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
38 2 0.02
39 69 0.52
40 62 0.47
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGGACAAATGCCTTCGGGACATAAC
Found at i:59363802 original size:39 final size:40
Alignment explanation
Indices: 59363685--59363908 Score: 244
Period size: 40 Copynumber: 5.7 Consensus size: 40
59363675 GCTACTCGTT
* * *
59363685 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
59363725 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
59363765 CCAATGCCTTCGGG-CTTAGCCTGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
59363804 CCAATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
59363843 CAAATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
* *
59363884 CAAA-GCCTTCGGAACTTGGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
59363909 CATCATTCGA
Statistics
Matches: 160, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 71 0.44
40 75 0.47
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:59363862 original size:79 final size:79
Alignment explanation
Indices: 59363685--59363855 Score: 229
Period size: 78 Copynumber: 2.2 Consensus size: 79
59363675 GCTACTCGTT
* * * *
59363685 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGGACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGG-CTTAGCCTGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
59363749 GATTTAGTAACTCGCA
64 AAATTAGTAACTCGCA
* * *
59363765 CCAATGCCTTCGGGCTTAGCCTGGAATTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGAA
1 CAAATGCCTTCGGGCTTAGCCTGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAA
59363829 ATTAGTAACTCGCA
66 ATTAGTAACTCGCA
59363843 CAAATGCCTTCGG
1 CAAATGCCTTCGG
59363856 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
78 34 0.43
79 32 0.40
80 14 0.17
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCTGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGAA
ATTAGTAACTCGCA
Found at i:59364727 original size:66 final size:66
Alignment explanation
Indices: 59364650--59364781 Score: 246
Period size: 66 Copynumber: 2.0 Consensus size: 66
59364640 AGAGCCGAAT
*
59364650 CACAAGGTTGATTATAACCAAACATAATCATAAATCCAAAACACAAATCTTACCTACCATGCAAT
1 CACAAGGTTGATTATAACCAAACATAAACATAAATCCAAAACACAAATCTTACCTACCATGCAAT
59364715 A
66 A
*
59364716 CACAAGGTTGATTATAACCGAACATAAACATAAATCCAAAACACAAATCTTACCTACCATGCAAT
1 CACAAGGTTGATTATAACCAAACATAAACATAAATCCAAAACACAAATCTTACCTACCATGCAAT
59364781 A
66 A
59364782 AGCATAAATC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.47, C:0.24, G:0.07, T:0.22
Consensus pattern (66 bp):
CACAAGGTTGATTATAACCAAACATAAACATAAATCCAAAACACAAATCTTACCTACCATGCAAT
A
Found at i:59371967 original size:39 final size:40
Alignment explanation
Indices: 59371850--59372073 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
59371840 GCTACTCGTT
* * *
59371850 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
59371890 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
59371930 CCAATGCCTTCGGG-CTTAGCCTGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* *
59371969 CCAATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
59372008 CAAATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
59372049 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
59372074 CATCATTCGA
Statistics
Matches: 162, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 71 0.44
40 76 0.47
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:59372033 original size:118 final size:120
Alignment explanation
Indices: 59371852--59372069 Score: 284
Period size: 118 Copynumber: 1.8 Consensus size: 120
59371842 TACTCGTTCA
** *
59371852 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGGACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
59371917 TTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCTGGAATTAGTAACTCGCACC
66 ATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCTGGAATTAGTAACTCGCACC
* **
59371971 AATGCCTTCGGG-CTTAGCCCGAA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
59372033 ATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCC
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCC
59372070 CGGACATCAT
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
117 4 0.05
118 58 0.68
119 23 0.27
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCTGGAATTAGTAACTCGCACC
Found at i:59395592 original size:4 final size:4
Alignment explanation
Indices: 59395583--59395634 Score: 88
Period size: 4 Copynumber: 13.2 Consensus size: 4
59395573 TTAATACCAA
*
59395583 TATG TATG TATG TATG TATG TAT- TATG TATG TATG TATG TATG TAAG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
59395630 TATG T
1 TATG T
59395635 TTTTTTTAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 3 0.07
4 42 0.93
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:59395613 original size:23 final size:23
Alignment explanation
Indices: 59395583--59395627 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
59395573 TTAATACCAA
59395583 TATGTATGTATGTATGTATGTAT
1 TATGTATGTATGTATGTATGTAT
59395606 TATGTATGTATGTATGTATGTA
1 TATGTATGTATGTATGTATGTA
59395628 AGTATGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (23 bp):
TATGTATGTATGTATGTATGTAT
Found at i:59396650 original size:20 final size:20
Alignment explanation
Indices: 59396617--59396668 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
59396607 ATAAGTCTTC
*
59396617 AAAAATAAATAAAAGAAAGAT
1 AAAAATAAA-AAAAGAAAAAT
* *
59396638 AAAATTAAAAAAATAAAAAT
1 AAAAATAAAAAAAGAAAAAT
59396658 AAAAATAAAAA
1 AAAAATAAAAA
59396669 TAACTGGACT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (20 bp):
AAAAATAAAAAAAGAAAAAT
Found at i:59396655 original size:6 final size:6
Alignment explanation
Indices: 59396646--59396671 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
59396636 ATAAAATTAA
59396646 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
59396672 CTGGACTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:59396656 original size:26 final size:26
Alignment explanation
Indices: 59396618--59396667 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
59396608 TAAGTCTTCA
*
59396618 AAAATAAATAAAAGAAAGATAAAATT
1 AAAATAAATAAAAGAAAAATAAAATT
*
59396644 AAAA-AAATAAAAATAAAAATAAAA
1 AAAATAAAT-AAAAGAAAAATAAAA
59396668 ATAACTGGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (26 bp):
AAAATAAATAAAAGAAAAATAAAATT
Found at i:59398270 original size:3 final size:3
Alignment explanation
Indices: 59398256--59398285 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
59398246 AAAAACAAAT
59398256 ATA ATGA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA AT-A ATA ATA ATA ATA ATA ATA ATA AT
59398286 GAAATTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:59399657 original size:22 final size:22
Alignment explanation
Indices: 59399629--59399671 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
59399619 AGCTTGAAGC
*
59399629 TTAATCGTGTCATCCCCTACAT
1 TTAATCGTGTCATCACCTACAT
59399651 TTAATCGTGTCATCACCTACA
1 TTAATCGTGTCATCACCTACA
59399672 CGAAGTATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.35
Consensus pattern (22 bp):
TTAATCGTGTCATCACCTACAT
Found at i:59401793 original size:40 final size:40
Alignment explanation
Indices: 59401710--59402607 Score: 1449
Period size: 40 Copynumber: 22.5 Consensus size: 40
59401700 AAACCAAGTA
* * * * *
59401710 CCTTCGGAATTTAG-CCGGATATAGCT-ACTCGCTCACATT
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
59401749 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
59401789 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
59401829 CCTTTGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
59401869 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
59401909 CCTTTGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
59401949 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
59401989 CCTTTGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
59402029 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
59402069 CCTTTGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
59402109 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
59402149 CCTTTGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
59402189 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
59402229 CCTTTGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
59402269 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
59402309 CCTTTGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
59402349 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
59402389 CCTTTGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
59402429 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
59402469 CCTTTGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
59402509 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
59402549 CCTTTGGGACTTAGCCCGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
59402589 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
59402608 TTATCATCCG
Statistics
Matches: 792, Mismatches: 65, Indels: 3
0.92 0.08 0.00
Matches are distributed among these distances:
39 13 0.02
40 779 0.98
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:59401842 original size:80 final size:80
Alignment explanation
Indices: 59401710--59402607 Score: 1692
Period size: 80 Copynumber: 11.2 Consensus size: 80
59401700 AAACCAAGTA
* * * * * * **
59401710 CCTTCGGAATTTAG-CCGGATATAGCT-ACTCGCTCACATTCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATA
*
59401773 GTAACTCGCACAAATG
65 GTCACTCGCACAAATG
59401789 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
59401854 TCACTCGCACAAATG
66 TCACTCGCACAAATG
59401869 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
59401934 TCACTCGCACAAATG
66 TCACTCGCACAAATG
59401949 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
59402014 TCACTCGCACAAATG
66 TCACTCGCACAAATG
59402029 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
59402094 TCACTCGCACAAATG
66 TCACTCGCACAAATG
59402109 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
59402174 TCACTCGCACAAATG
66 TCACTCGCACAAATG
59402189 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
59402254 TCACTCGCACAAATG
66 TCACTCGCACAAATG
59402269 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
59402334 TCACTCGCACAAATG
66 TCACTCGCACAAATG
59402349 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
59402414 TCACTCGCACAAATG
66 TCACTCGCACAAATG
59402429 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
59402494 TCACTCGCACAAATG
66 TCACTCGCACAAATG
59402509 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
59402574 TCACTCGCACAAATG
66 TCACTCGCACAAATG
59402589 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
59402608 TTATCATCCG
Statistics
Matches: 808, Mismatches: 9, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
79 13 0.02
80 795 0.98
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAAATAG
TCACTCGCACAAATG
Found at i:59409578 original size:40 final size:40
Alignment explanation
Indices: 59409501--59409678 Score: 270
Period size: 40 Copynumber: 4.5 Consensus size: 40
59409491 AAACCAAGTA
* * *
59409501 CCTTCGGAATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
59409540 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
59409580 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
59409620 CCTTCGGGACTTAGCCTGGAAATAGTCACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
59409660 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
59409679 TTATCATCCG
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 13 0.10
40 115 0.90
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:59411112 original size:647 final size:647
Alignment explanation
Indices: 59409879--59423534 Score: 23645
Period size: 647 Copynumber: 21.1 Consensus size: 647
59409869 NNNNNNNNNG
* * *
59409879 AAAATGATCCCAGACTAAATCGAGAACATATGAAATCTTAAGGAAAAAGTTAGAAAAAATGCATA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
*
59409944 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTCCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* * * *
59410009 TTGACGGTGAACAGATTGAGGTTGTGGAACTGTGGAGTTTAACATTAAATGCGTATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
* *
59410074 CATGCATCATACGAAGAAATAAATTAGGTGGTACTTGTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
* * *
59410139 CGCGTATTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTCCCTCATTAGAACCTACTCGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
*
59410204 TCCCCACAACATCTTTTACCTATATAAGAACATTTCCAAA-ATAATCAAAAGCTATCACACTATC
326 TCCCGACAACATCTTTTACCTATATAAGAACATTT-CAAAGATAATCAAAAGCTATCACACTATC
*
59410268 TCCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATACTAAGTTTAGTCTGAGAATCGAC
390 TCCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGAC
* * * * * * *
59410333 TAAATAGTAGTTCTGATATCACTAAATGTAACACCCCTAATCGTATTTGTCAGTAAAATAGGGTT
455 TAAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTT
* * ** *
59410398 ACAGAGCATTTCCGTAAAATCGTAACATAAAAAATTCATTTCTGAACATTCGATAACTCATAGCA
520 ACAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCA
* * *
59410463 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCGAGGCCTTAAAAAAATTTG
585 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
* * * *
59410526 AAAATGATCCCTGACTAAATCTAGAACATATGAAATCTTAAGGAAAAAGTTAGAGAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
*
59410591 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTCCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* * * *
59410656 TTGACGGTGAACAGATTGAGGTTGTGGAACTGTGGAGTTTAACATTAAATGCGTATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
59410721 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
*
59410786 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTCCCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
* *
59410851 TCCCCACAACATCTTTTACCTATATAAGAACATTTCAAAAATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
59410916 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* * *
59410981 GAATTGTAGTTCTGATATCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
* * ** *
59411046 GAGAACATTACCGTAAAATCATAACATAAAAAATTCATTTCCAAACATTCGATAACTCATAGCAT
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCAT
* * *
59411111 AATTCATTGAAACACATGCATATTATCCCTTAATCGTGCCCTCGAGGCCTTAAAAAAATTTA
586 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
*
59411173 AAAATGATCCCGGACTAAATCGAGAACATATGAAATCTTAAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
*
59411238 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTCCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* * *
59411303 TTGATGGTGAGCAGATTGAGGTTATGGAAC-GTGGAGTTTACCATTTAATGTGCATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
* *
59411367 CATGCATCATACAAAGAAATAAATTAGGT--TGCTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
* * * * *
59411430 CGTGTACGTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCCTTTGAAACTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
* * * * *
59411495 TCCCTACAACATCTTTTACCTACATAAGAACATTTCAAAAATAATCATAAGCGATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
*
59411560 CCGGTTAGTCAAGTGTCATGTATTTCTAGCCTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* * * * *
59411625 AAATTGTAGCTCTGATATCACTAAATGTAACACCCTTAACCATATTCATCACTAAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
* * * * *
59411690 CAGAGCATTTCCGTAAAATCGAAACATAAAAAATTCATGTCCAAACATTCGATAACTCATAGCAT
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCAT
* * *
59411755 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCGAGGCCTTAAAAAAATTTG
586 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
* *
59411817 AAAATGATCCCAGACTAAATCGAGAACATATGAAATCTTAAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
*
59411882 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTCCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* * * *
59411947 TTGACGGTGAACAGATTGAGGTTGTGGAACTGTGGAGTTTAACATTAAATGCGTATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
* *
59412012 CATGCATCATACGAAGAAATAAATTAGGTGATACTTGTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
*
59412077 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTCCCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
* * * *
59412142 TCCCCACAACATCGTTTT-TCTATATAAGAACATTTCAAAAATAATCAAAAGCTATAACACTATC
326 TCCCGACAACATC-TTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATC
* *
59412206 TCCTGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGAA
390 TCCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGAC
* * * * *
59412271 TTAATTGTAGTTCTGATATCACTAAACGTAACACCCTTAACCATATTCGTCACTAAAATAGGGTT
455 TAAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTT
* *
59412336 ACAGAGCATTACCGTAAAATCGTAACATAAAAAATTCATTTCCAAACATTCGATAACTCATAGCA
520 ACAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCA
* * *
59412401 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCGAGGCCTTAAAAAAATTTG
585 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
* *
59412464 AAAATGATCCCAGACTAAATCGAGAACATATGAAATCTTAAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
*
59412529 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTCCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* * * *
59412594 TTGACGGTGAACAGATTGAGGTTGTGGAACTGTGGAGTTTAACATTAAATGCGTATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
*
59412659 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTGTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
*
59412724 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTCCCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
* *
59412789 TCCCCACAACATCTTTTACCTATATAAGAACATTTCAAAAATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
59412854 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* *
59412919 AAATTGTAGTTCTGATATCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
* ** *
59412984 CAGGGCATTACCGTAAAATCATAACATAAAAAATTCATTTCCAAACATTAGATAAATCATAGCAT
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCAT
59413049 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
586 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
*
59413111 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTGAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
59413176 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
59413241 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
59413306 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
59413371 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
59413436 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
*
59413501 CCGGTTAGTCAAGTGTCATATATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* *
59413566 AAATTGTTGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTCAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
*
59413631 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAAATCATAGCAT
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCAT
59413696 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
586 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
* *
59413758 AAAATGATCCCAGACTAAATCGAGAACATATGAAACCTTGAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
59413823 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
59413888 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
59413953 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
59414018 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
59414083 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
*
59414148 CCGGTTAGTCAAGTGTCATATATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* *
59414213 AAATTGTTGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTCAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
59414278 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATCAA-TCATAGCA
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGAT-AACTCATAGCA
59414342 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
585 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
*
59414405 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTGAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
59414470 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* *
59414535 TTGATGGTGAGCATATTGAGGTTGTGGAACTGTGGAGTTTAACATTAAATGCGCATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
59414600 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
*
59414665 CGCATACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
59414730 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
*
59414795 CCGGTTAGTCAAGTGTCATATATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* *
59414860 AAATTGTTGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTCAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
59414925 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATCAA-TCATAGCA
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGAT-AACTCATAGCA
59414989 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
585 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
*
59415052 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTGAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
59415117 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
*
59415182 TTGATGGTGAGCATATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
59415247 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
59415312 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
59415377 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
*
59415442 CCGGTTAGTCAAGTGTCATATATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* *
59415507 AAATTGTTGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTCAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
*
59415572 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAAATCATAGCAT
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCAT
59415637 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
586 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
*
59415699 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTGAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
59415764 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
59415829 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
59415894 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
*
59415959 TGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
59416024 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
*
59416089 CCGGTTAGTCAAGTGTCATATATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* *
59416154 AAATTGTTGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTCAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
*
59416219 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAAATCATAGCAT
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCAT
59416284 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
586 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
*
59416346 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTGAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
59416411 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
59416476 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
59416541 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
*
59416606 CGCATACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
59416671 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
*
59416736 CCGGTTAGTCAAGTGTCATATATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* *
59416801 AAATTGTTGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTCAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
59416866 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATCAA-TCATAGCA
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGAT-AACTCATAGCA
59416930 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
585 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
*
59416993 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTGAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
59417058 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
59417123 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
59417188 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
*
59417253 CGCATACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
59417318 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
*
59417383 CCGGTTAGTCAAGTGTCATATATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* *
59417448 AAATTGTTGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTCAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
*
59417513 CAGAGCATTACCGTAAAATTGTAACTTAAAAAATTCATTTCCAAACATTAGATCAA-TCATAGCA
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGAT-AACTCATAGCA
59417577 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
585 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
*
59417640 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTGAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
59417705 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* *
59417770 TTGATGGTGAGCATATTGAGGTTGTGGAACTGTGGAGTTTAACATTAAATGCGCATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
59417835 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
*
59417900 CGCATACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
59417965 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
* *
59418030 CCGGTTCGTCAAGTGTCATATATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* *
59418095 AAATTGTTGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTCAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
59418160 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATCAA-TCATAGCA
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGAT-AACTCATAGCA
59418224 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
585 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
*
59418287 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTGAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
59418352 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* *
59418417 TTGATGGTGAGCATATTGAGGTTGTGGAACTGTGGAGTTTAACATTAAATGCGCATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
59418482 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
*
59418547 CGCATACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
59418612 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
*
59418677 CCGGTTAGTCAAGTGTCATATATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* *
59418742 AAATTGTTGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTCAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
59418807 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATCAA-TCATAGCA
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGAT-AACTCATAGCA
59418871 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
585 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
*
59418934 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTGAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
59418999 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
59419064 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
59419129 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
*
59419194 CGCATACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
59419259 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
*
59419324 CCGGTTAGTCAAGTGTCATATATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* *
59419389 AAATTGTTGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTCAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
59419454 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATCAA-TCATAGCA
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGAT-AACTCATAGCA
59419518 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
585 TAATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
*
59419581 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTGAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
59419646 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* *
59419711 TTGATGGTGAGCATATTGAGGTTGTGGAACTGTGGAGTTTAACATTAAATGCGCATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
59419776 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
*
59419841 CGCATACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
59419906 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
*
59419971 CCGGTTAGTCAAGTGTCATGTATTTCTAGCCTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* * * *
59420036 AAATTGTAGCTCTGATATCACTAAATGTAACACCCTTAACCATATTCGTCACTAAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
* *
59420101 CAGAGCATTACCGTAAAATCGTAACATAAAAAATTCATTTCCAAACATTCGATAACTCATAGCAT
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCAT
* * *
59420166 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCGAGGCCTTAAAAAAATTTG
586 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
* * * * *
59420228 AAAATGATCCCAGACTAAATCGGGAACATATGAAATCTTAAGGAAAAAGTTGGAAAAATTGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
*
59420293 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTCCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* * * *
59420358 TTGACGGTGAACAGATTGAGGTTGTGGAACTGTGGAGTTTAACATTAAATGCGTATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
* * * *
59420423 CATGCATCATACGAAGAAATAAATTAGGTGATACTTGTCTAGATTCATACGGTCCAGGTTTATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
* * *
59420488 TGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTCCCTCATTAGAACCTACTCGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
* * *
59420553 TCCCCACAACATCTTTTAACTATATAAGAACATTTCAAAAATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
* * *
59420618 CCTGTTAGTCAAGTGTCATGTATTTCTAGAC-CTATCCATGCTAAGTTTAATCTAAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* * * * *
59420682 TAATTGTAGCTCTAATATCAATAAATGTAACA-CCCTAACCGTATTCGTCACTAAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
* *
59420746 TAGAGCATTACCGTAAAATTGTAACATAAAAAATT-ATTTCCAAACATTCGATAACTCATAGCAT
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCAT
* * * *
59420810 AATTTATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCGAGGCTTTAAAAAAATTTA
586 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
* * * * *
59420872 AAAATGATTCCAGACTAAATCGAAAACATATGAAATCTTAAGGAAAAACTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
* *
59420937 CTACAAGGGTCACACTTTCTAACTTTATACCTGGTCACTCTATGAGCACATTACTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* * * *
59421002 TTGACGGTGAACAGATTGAGGTTGTGGAACTGTGGAGTTTAACATTAAATGCGTATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
*
59421067 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTGTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
*
59421132 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTCCCTCATTAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
* *
59421197 TCCCCACAACATCTTTTACCTATATAAGAACATTTCAAAAATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
59421262 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* *
59421327 AAATTGTAGTTCTGATATCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
* * ** * *
59421392 GAGAGCATTACCATAAAATCATAACTTAAAAAATTCATTTCCAAACATTCGATAACTCATAGCAT
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCAT
* *
59421457 AATTCATTGAAACACATGCATATTATCCCTTAATCGTGCCCTCGAGGCCTTAAAAAA-TTTA
586 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
* * *
59421518 AAAATGATTCCGGACTAAATCGAGAACAGATGAAATCTTAAGGAAAAAGTTAGAAAAAATGCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
* *
59421583 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTAGGAGCACATTCCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* * * *
59421648 TTGATGGTCAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTTAATGTGCATCCTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
* * *
59421713 CATGCATCATACGAAGAAATAAATTAGGT--TGCTTCTCTAGATTCTTGCGGTCCAGGTTCATTT
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
* * *
59421776 CGTGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTTGAAACTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
* *
59421841 TCCCTACAACATCTTTTACCTATATAAGAACATTTCAAAAATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
* * * *
59421906 CCGGTTAGTTAACTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCCGAGAATCTACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
** *
59421971 AAATTGTAGCTCTGATACCACTAATTGTAACACCCCTAACTGTATTCGTCACTAAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
* * *
59422036 CAGAGCATTACCGTAAAATCGTAACATAAAAAATTCATTTCTAAACATTCGATAACTCATAGCAT
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCAT
*
59422101 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCGAGGCCTTATAAAAA-TTTA
586 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTA-AAAAATTTTA
* * * *
59422163 AAAATGATCCTGGACTAAATCGAGAACATATGAAATCTTAAGAAAAAAGTTAGAAAAAATGCACG
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
* * * *
59422228 TTACAAGGGTCACACTTTCTAATTTTATACATGGTCACTCTAGGAGCACATTCCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* * *
59422293 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTTAATGTGCATCCTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
* *
59422358 CATGCATCATACGAAGAAATAATTTAGGT--TGCTTCTCTAGATTCTTACGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
* * *
59422421 CGTGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTTGAAACTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
* * *
59422486 TCCCTACAACATCTTTTGCCTATATAAGAACATTTCAAAAATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
*
59422551 CCGGTTAGTCAAGTGTCATGTATTTCTAGCCTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
* * * * *
59422616 AAATTGTAGCTCTGATAACACTAAATGTAACACCCTTAACCATATTCGTCACTAAAATAGGTTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
* * *
59422681 CAGAGCATTACCGTAAAATCGTAACATAAAAAATTCATTTCTAAACATTCGATAACTCATAGCAT
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCAT
*** *
59422746 AATTCATTGAAACACATGCATATTATCCCTTAATATTGCCCTCGAGGCCTTATAAAAA-TTTA
586 AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTA-AAAAATTTTA
* * *
59422808 AAAATGATCCCGGACTAAATCGAGAACATATGAAATCTTAAGAAAAAAGTTAGAAAAAATGCACG
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
* * *
59422873 TTACAAGGGTCACACTTTCTAATTTTATACATGGTCACTCTATGAGCGCATTGCTTACTTGAACC
66 CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
* * *
59422938 TTGATGGTGTGGAGATTGAAGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
131 TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
* **
59423003 CATGCATTATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTGTGGTCCAGGTTCATTC
196 CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
* * * *
59423068 TGTGTACTTTCCTCGTTAGTAGGTGGAATAAAAATTTCTACCTCATCAGAACCTACTTGATTAGA
261 CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
* * *
59423133 TCCCGACGACATATTTTACCTATATAAGAACATTTCAAAAATAATCAAAAGCTATCACACTATCT
326 TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
* * * *
59423198 CCGGTTAGTTAACTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCCGAGAATCTACT
391 CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
** *
59423263 AAATTGTAGCTCTGATACCACTAATTGTAACACCCCTAACTGTATTCGTCACTAAAATAGGGTTA
456 AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
** * * * * * * * * *
59423328 CAGAGCATTACCGTAAAATCATAACTTAAAATAGTCATTTTCAAGCATTGGATAAATCTTACCAT
521 CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCAT
* * * ** * * *
59423393 TATTC-TATGAAACATATGTATATCGTCCCTTAATAGA-CTCCTCGAGGCCTTAAAAACACTTTA
586 AATTCAT-TGAAACACATGCATATTATCCCTTAATCGAGC-CCTCAAGGCCTTAAAAA-ATTTTA
*** * * * * * *
59423456 AAAATGATTTGGGACTAAATCGGGAACATATAAAACCATAAGGAAAAGGTTA-CAAAAATTCACA
1 AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
59423520 CTACAAGGGTCACAC
66 CTACAAGGGTCACAC
59423535 GGCCGTGTGG
Statistics
Matches: 12630, Mismatches: 359, Indels: 40
0.97 0.03 0.00
Matches are distributed among these distances:
644 1432 0.11
645 1019 0.08
646 411 0.03
647 9713 0.77
648 55 0.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.30
Consensus pattern (647 bp):
AAAATGATCCCGGACTAAATCGAGAACATATGAAACCTTAAGGAAAAAGTTAGAAAAAATGCACA
CTACAAGGGTCACACTTTCTAACTTTATACATGGTCACTCTATGAGCACATTGCTTACTTGAACC
TTGATGGTGAGCAGATTGAGGTTGTGGAACTGTGGAGTTTACCATTAAATGCGCATCGTACATGT
CATGCATCATACGAAGAAATAAATTAGGTGCTACTTCTCTAGATTCTTACGGTCCAGGTTCATTC
CGCGTACTTTCCTCGTTAGTAGGTGGAATAAAACTTTCTACCTCATTAGAACCTACTTGATTAGA
TCCCGACAACATCTTTTACCTATATAAGAACATTTCAAAGATAATCAAAAGCTATCACACTATCT
CCGGTTAGTCAAGTGTCATGTATTTCTAGACTCTATCCATGCTAAGTTTAGTCTGAGAATCGACT
AAATTGTAGCTCTGATACCACTAAACGTAACACCCCTAACCGTATTCGTCACTAAAATAGGGTTA
CAGAGCATTACCGTAAAATTGTAACATAAAAAATTCATTTCCAAACATTAGATAACTCATAGCAT
AATTCATTGAAACACATGCATATTATCCCTTAATCGAGCCCTCAAGGCCTTAAAAAATTTTA
Found at i:59458719 original size:40 final size:40
Alignment explanation
Indices: 59458668--59459172 Score: 778
Period size: 40 Copynumber: 12.6 Consensus size: 40
59458658 CATTTGAATG
59458668 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
59458708 ATATCCGGGCTAAGACCCGATGGCGTTTGTGTGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
59458748 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
59458788 ATATCCGGGCTAAGACCCGATGGCGTTTGTGTGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
59458828 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
59458868 ATATCCGGGCTAAGACCCGATGGCGTTTGTGTGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
59458908 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
59458948 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
59458988 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAACTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* * *
59459028 ATATCCGGGCTAAGACCCGATGGCGTTTGTGTGAATTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
*
59459068 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGAT
* * * *
59459108 ATATCCGGGCTAAGACCCGAAGGCATTCGTGTGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
* *
59459148 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
59459173 ATTGAGCTTG
Statistics
Matches: 423, Mismatches: 40, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
39 2 0.00
40 420 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGAT
Found at i:59459195 original size:160 final size:160
Alignment explanation
Indices: 59458668--59459172 Score: 877
Period size: 160 Copynumber: 3.2 Consensus size: 160
59458658 CATTTGAATG
* *
59458668 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGCTAAGACCCGATGGCG
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGATGGCG
*
59458733 TTTGTGTGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAACTGATATATCCGGGC
66 TTTGTGTGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGC
* *
59458798 TAAGACCCGATGGCGTTTGTGTGAATTGAT
131 TAAGACCCGAAGGCATTTGTGTGAATTGAT
*
59458828 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGATGGCG
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGATGGCG
*
59458893 TTTGTGTGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGT
66 TTTGTGTGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGC
*
59458958 TAAGACCCGAAGGCATTTGTGCGAATTGAT
131 TAAGACCCGAAGGCATTTGTGTGAATTGAT
59458988 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGATGGCG
1 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGATGGCG
*
59459053 TTTGTGTGAATTGATATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTGATATATCCGGG
66 TTTGTGTGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAA-TTGATATATCCGGG
* * *
59459117 CTAAGACCCGAAGGCATTCGTGTGAGTTGCT
130 CTAAGACCCGAAGGCATTTGTGTGAATTGAT
*
59459148 ATACCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGTTAAGACCCGAAGGCA
59459173 ATTGAGCTTG
Statistics
Matches: 330, Mismatches: 14, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
159 2 0.01
160 328 0.99
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (160 bp):
ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAACTGATATATCCGGGCTAAGACCCGATGGCG
TTTGTGTGAATTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGATATATCCGGGC
TAAGACCCGAAGGCATTTGTGTGAATTGAT
Found at i:59460624 original size:26 final size:26
Alignment explanation
Indices: 59460545--59460624 Score: 62
Period size: 26 Copynumber: 3.1 Consensus size: 26
59460535 CAGATCACGA
* *
59460545 GTGTAGTACTATGTGCAAGCTACTAC
1 GTGTAGTACTATGTGCAGGCTACTAT
*
59460571 GTGTA-T-CGGATAGTG-ATGG-TCAC-AT
1 GTGTAGTAC-TAT-GTGCA-GGCT-ACTAT
59460596 GTGTAGTACTATGTGCAGGCTACTAT
1 GTGTAGTACTATGTGCAGGCTACTAT
59460622 GTG
1 GTG
59460625 AACCGGTATC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
24 1 0.02
25 18 0.44
26 21 0.51
27 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.33
Consensus pattern (26 bp):
GTGTAGTACTATGTGCAGGCTACTAT
Found at i:59460869 original size:16 final size:16
Alignment explanation
Indices: 59460848--59460879 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
59460838 TGATGGAAAG
*
59460848 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
59460864 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
59460880 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Done.