Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 197 of 203
Found at i:62936516 original size:22 final size:22
Alignment explanation
Indices: 62936465--62936516 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
62936455 TTTTATAGTT
*
62936465 ATAATTAAATATTTTTTATAACA
1 ATAA-TAAATATTATTTATAACA
* *
62936488 ATGATAAATATTATTT-TCACAA
1 ATAATAAATATTATTTATAAC-A
62936510 ATAATAA
1 ATAATAA
62936517 CATTATACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAATAAATATTATTTATAACA
Found at i:62950646 original size:27 final size:27
Alignment explanation
Indices: 62950615--62950792 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62950605 TAAATTGTAC
62950615 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62950642 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62950668 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62950696 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62950724 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62950751 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62950778 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62950793 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62950729 original size:82 final size:81
Alignment explanation
Indices: 62950616--62950771 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
62950606 AAATTGTACA
* *
62950616 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
62950680 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
62950697 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
62950762 TGCGAGTTGA
65 TGCGAATTGA
62950772 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:62950783 original size:82 final size:81
Alignment explanation
Indices: 62950612--62950792 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
62950602 GATTAAATTG
* *
62950612 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
62950677 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
62950693 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
62950757 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
62950775 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
62950793 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:62956845 original size:9 final size:10
Alignment explanation
Indices: 62956812--62956858 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
62956802 ATTGATTATT
62956812 AAAATTATAG
1 AAAATTATAG
62956822 AAATATTATA-
1 AAA-ATTATAG
*
62956832 AAAAATATAG
1 AAAATTATAG
62956842 AAAATTTTATAG
1 AAAA--TTATAG
62956854 AAAAT
1 AAAAT
62956859 AACATAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
9 5 0.16
10 11 0.35
11 6 0.19
12 9 0.29
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (10 bp):
AAAATTATAG
Found at i:62956846 original size:21 final size:20
Alignment explanation
Indices: 62956806--62956859 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
62956796 CAATTGATTG
* *
62956806 ATTATTAAAATTATAGAAAT
1 ATTATAAAAAATATAGAAAT
62956826 ATTATAAAAAATATAGAAAAT
1 ATTATAAAAAATATAG-AAAT
* *
62956847 TTTATAGAAAATA
1 ATTATAAAAAATA
62956860 ACATAAAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (20 bp):
ATTATAAAAAATATAGAAAT
Found at i:62956925 original size:17 final size:19
Alignment explanation
Indices: 62956903--62956943 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
62956893 AAATAATTTG
*
62956903 TAATTTT-AATTATTT-TA
1 TAATTTTAAATAATTTATA
62956920 TAATTTTAAATAATTTATA
1 TAATTTTAAATAATTTATA
62956939 TAATT
1 TAATT
62956944 AATCTATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 7 0.33
19 7 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TAATTTTAAATAATTTATA
Found at i:62957010 original size:46 final size:44
Alignment explanation
Indices: 62956881--62957010 Score: 138
Period size: 46 Copynumber: 2.8 Consensus size: 44
62956871 ATTAAAATGA
* *
62956881 TAAAAATTTATAAAATAATTTGTAATTT-TAATTATTTTATAATTT
1 TAAAAATTTATATAATAATTTATAATTTCT-ATT-TTTTATAATTT
*
62956926 TAAATAATTTATATAATTAATCTATAATTTTCTA-TTTTTATAATTT
1 TAAA-AATTTATATAA-TAATTTATAA-TTTCTATTTTTTATAATTT
* *
62956972 TCTAAAATTTATATAATATTTTAATAATTTCTATTTTTT
1 T-AAAAATTTATATAATAATTT-ATAATTTCTATTTTTT
62957011 TATTTAATAA
Statistics
Matches: 72, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
45 14 0.19
46 42 0.58
47 11 0.15
48 4 0.06
49 1 0.01
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (44 bp):
TAAAAATTTATATAATAATTTATAATTTCTATTTTTTATAATTT
Found at i:62957611 original size:29 final size:30
Alignment explanation
Indices: 62957542--62957631 Score: 96
Period size: 29 Copynumber: 3.0 Consensus size: 30
62957532 TTTGTATTTG
*
62957542 TTTAATATTTT-TATCATATTTAATAAT-T
1 TTTAATATTTTCTATAATATTTAATAATAT
* *
62957570 TTTCTATAATTTCTATAAT-TTTAATAATAT
1 TTT-AATATTTTCTATAATATTTAATAATAT
62957600 TTTAATATTTTCTTCATAATATATTAATAATA
1 TTTAATATTTTC-T-ATAATAT-TTAATAATA
62957632 AATGATAATA
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
28 3 0.06
29 22 0.44
30 10 0.20
31 5 0.10
32 1 0.02
33 9 0.18
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.57
Consensus pattern (30 bp):
TTTAATATTTTCTATAATATTTAATAATAT
Found at i:62958941 original size:11 final size:11
Alignment explanation
Indices: 62958914--62958950 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
62958904 ATTTATTACA
62958914 AATATTATTTT
1 AATATTATTTT
62958925 --TATTATTTT
1 AATATTATTTT
62958934 AATATTATTTT
1 AATATTATTTT
62958945 AATATT
1 AATATT
62958951 GTTATATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 9 0.38
11 15 0.62
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
AATATTATTTT
Found at i:62960906 original size:20 final size:20
Alignment explanation
Indices: 62960861--62960960 Score: 53
Period size: 20 Copynumber: 5.0 Consensus size: 20
62960851 CGTAGTGCTG
*
62960861 AATAGGGGCACCAGAGTGTA
1 AATAGGGGCACCAGAGTGCA
* *
62960881 ATTAGGGGCATC-GAAGTGCA
1 AATAGGGGCACCAG-AGTGCA
* * **
62960901 AATA-GGGCACTAAAGTATA
1 AATAGGGGCACCAGAGTGCA
* * *
62960920 AAAAAGGGCACTAGAGTGC-
1 AATAGGGGCACCAGAGTGCA
* *
62960939 AATCAGGGGCACTAAAGTGCA
1 AAT-AGGGGCACCAGAGTGCA
62960960 A
1 A
62960961 CCAGTATAAG
Statistics
Matches: 59, Mismatches: 16, Indels: 9
0.70 0.19 0.11
Matches are distributed among these distances:
19 15 0.25
20 43 0.73
21 1 0.02
ACGTcount: A:0.39, C:0.15, G:0.30, T:0.16
Consensus pattern (20 bp):
AATAGGGGCACCAGAGTGCA
Found at i:62980002 original size:27 final size:26
Alignment explanation
Indices: 62979965--62980294 Score: 354
Period size: 27 Copynumber: 12.3 Consensus size: 26
62979955 AGAGGTCGAT
62979965 AAATGACCGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
* *
62979992 AAATGATCGAAATACTCCCATAGGATA
1 AAATGACCGAAATAC-CCCATAGGGTA
*
62980019 AAATGACCGAAATACCCCTATAGGGCA
1 AAATGACCGAAATACCCC-ATAGGGTA
* * *
62980046 AAATAACCGAAATACCCTCGTAAGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
62980073 AAATGACCGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCC-ATAGGGTA
* *
62980100 AAATGACTGAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
**
62980127 AAATGACTAAAATACCCCCATAGGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
** * *
62980154 AAATGATTGGAATACCCCTATAAGGTA
1 AAATGACCGAAATACCCC-ATAGGGTA
62980181 AAATGACCGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCC-CATAGGGTA
* * ***
62980208 AATTAATTAAAATACCCCATAGGGTA
1 AAATGACCGAAATACCCCATAGGGTA
* * *
62980234 AAATGATCGAAATACCTTCATAGGATA
1 AAATGACCGAAATACC-CCATAGGGTA
*
62980261 AAATGACCGAAATACCCCCATAAGGTA
1 AAATGACCGAAATA-CCCCATAGGGTA
62980288 AAATGAC
1 AAATGAC
62980295 TGTTATACCC
Statistics
Matches: 254, Mismatches: 39, Indels: 20
0.81 0.12 0.06
Matches are distributed among these distances:
26 29 0.11
27 216 0.85
28 9 0.04
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (26 bp):
AAATGACCGAAATACCCCATAGGGTA
Found at i:62980105 original size:81 final size:81
Alignment explanation
Indices: 62979965--62980291 Score: 394
Period size: 81 Copynumber: 4.0 Consensus size: 81
62979955 AGAGGTCGAT
* *
62979965 AAATGACCGAAATACCCTCATAGGGTAAAATGATCGAAATACTCCC-ATAGGATAAAATGACCGA
1 AAATAACCAAAATACCCTCATAGGGTAAAATGATCGAAATAC-CCCTATAGGATAAAATGACCGA
*
62980029 AATACCCCTATAGGGCA
65 AATACCCCTATAGGGTA
* * * * * *
62980046 AAATAACCGAAATACCCTCGTAAGGTAAAATGACCGAAATACCCCTATAGGGTAAAATGACTGAA
1 AAATAACCAAAATACCCTCATAGGGTAAAATGATCGAAATACCCCTATAGGATAAAATGACCGAA
*
62980111 ATACCCTTATAGGGTA
66 ATACCCCTATAGGGTA
* * * * *
62980127 AAATGACTAAAATACCCCCATAGGGTAAAATGATTGGAATACCCCTATAAGG-TAAAATGACCGA
1 AAATAACCAAAATACCCTCATAGGGTAAAATGATCGAAATACCCCTAT-AGGATAAAATGACCGA
62980191 AATA-CCCTCATAGGGTA
65 AATACCCCT-ATAGGGTA
* ** *
62980208 AATTAATTAAAATACCC-CATAGGGTAAAATGATCGAAATA-CCTTCATAGGATAAAATGACCGA
1 AAATAACCAAAATACCCTCATAGGGTAAAATGATCGAAATACCCCT-ATAGGATAAAATGACCGA
* *
62980271 AATACCCCCATAAGGTA
65 AATACCCCTATAGGGTA
62980288 AAAT
1 AAAT
62980292 GACTGTTATA
Statistics
Matches: 212, Mismatches: 28, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
79 6 0.03
80 55 0.26
81 148 0.70
82 3 0.01
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (81 bp):
AAATAACCAAAATACCCTCATAGGGTAAAATGATCGAAATACCCCTATAGGATAAAATGACCGAA
ATACCCCTATAGGGTA
Found at i:63001247 original size:12 final size:12
Alignment explanation
Indices: 63001230--63001254 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63001220 TGATAGTTTT
63001230 GCTGTTGTATCG
1 GCTGTTGTATCG
63001242 GCTGTTGTATCG
1 GCTGTTGTATCG
63001254 G
1 G
63001255 GGTTATGGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.36, T:0.40
Consensus pattern (12 bp):
GCTGTTGTATCG
Found at i:63011720 original size:51 final size:50
Alignment explanation
Indices: 63011661--63011796 Score: 211
Period size: 50 Copynumber: 2.7 Consensus size: 50
63011651 CCGATTCACA
* *
63011661 TAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCA-TCTGTTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC--TATCATTCTGGTACACG
*
63011712 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTATCATTCTGGTACACG
*
63011762 TAGTAGCCTGCACATAGTACTACACACGTGACCTA
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTA
63011797 GCAACTTCAC
Statistics
Matches: 79, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
49 4 0.05
50 43 0.54
51 32 0.41
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCTATCATTCTGGTACACG
Found at i:63016386 original size:51 final size:50
Alignment explanation
Indices: 63016327--63016462 Score: 211
Period size: 50 Copynumber: 2.7 Consensus size: 50
63016317 CCGATTCACA
* *
63016327 TAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCA-TCTGTTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC--TATCATTCTGGTACACG
*
63016378 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTATCATTCTGGTACACG
*
63016428 TAGTAGCCTGCACATAGTACTACACACGTGACCTA
1 TAGTAGCCTGCACATAGTACTACACATGTGACCTA
63016463 GCAACTTCAC
Statistics
Matches: 79, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
49 4 0.05
50 43 0.54
51 32 0.41
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCTATCATTCTGGTACACG
Found at i:63023286 original size:22 final size:22
Alignment explanation
Indices: 63023261--63023315 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
63023251 TACAAATTAA
63023261 ATCTTTAAGATTAGAAAATCAT
1 ATCTTTAAGATTAGAAAATCAT
* *
63023283 ATCTTCTAAGATT-GCATATCAT
1 ATCTT-TAAGATTAGAAAATCAT
63023305 ATC--TAAGATTA
1 ATCTTTAAGATTA
63023316 TATATCATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 7 0.24
22 15 0.52
23 7 0.24
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (22 bp):
ATCTTTAAGATTAGAAAATCAT
Found at i:63023311 original size:19 final size:19
Alignment explanation
Indices: 63023287--63023378 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
63023277 AATCATATCT
63023287 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
63023306 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
63023325 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
63023344 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
63023363 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
63023379 CCTGAAGATT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 63 1.00
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:63023333 original size:38 final size:38
Alignment explanation
Indices: 63023287--63023378 Score: 175
Period size: 38 Copynumber: 2.4 Consensus size: 38
63023277 AATCATATCT
63023287 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
*
63023325 TCTAAGATTGCATATCATATCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
63023363 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
63023379 CCTGAAGATT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCTAAGATTATATATCATA
Found at i:63023867 original size:44 final size:44
Alignment explanation
Indices: 63023819--63024263 Score: 110
Period size: 44 Copynumber: 10.1 Consensus size: 44
63023809 ACTACTGCTT
* *
63023819 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTCC
* * ***
63023863 AGGGA-AGT-AGAATTACTG---GCTTCAATGTACTCCACTATAACCAC
1 AGGGAGA-TAAG-A-T-CTGAAATCTTCAATCTACTCCACTATTGTC-C
* * * ** * * * **
63023907 AGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGTTT
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTCC
* * *
63023951 AGGGAGATAAGACCTGAAATCTTCAATCTATTCCACTGTTGTCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTCC
* * ***
63023995 AGGGA-AGT-AGAATTACTG---GCTTCAATGTACTCCACTATAACCAC
1 AGGGAGA-TAAG-A-T-CTGAAATCTTCAATCTACTCCACTATTGTC-C
* * * ** * * * *
63024039 AGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTG-CTT
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTC-C
* * * *
63024083 AGGGAGATAAGATCTGAAATCTTCAATCTATTCCATTGTTGCCC
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTCC
**** * ***
63024127 AGGGA-AGT-AGA-CTTGCTGGCTTCAATGTACTCCACTATAACCAC
1 AGGGAGA-TAAGATC-TGAAATCTTCAATCTACTCCACTATTGTC-C
* * * * ** * * * *
63024171 AGGAAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTG-CTT
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTC-C
* * * *
63024215 AGGGAGATAAGATCTGAAATCTTTAATCTATTCCACTGTTGTCG
1 AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTCC
63024259 AGGGA
1 AGGGA
63024264 AGTAAAATTA
Statistics
Matches: 270, Mismatches: 103, Indels: 56
0.63 0.24 0.13
Matches are distributed among these distances:
42 5 0.02
43 65 0.24
44 139 0.51
45 54 0.20
46 7 0.03
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (44 bp):
AGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTCC
Found at i:63023926 original size:132 final size:132
Alignment explanation
Indices: 63023704--63024334 Score: 1034
Period size: 132 Copynumber: 4.8 Consensus size: 132
63023694 TAGGACTTAC
* * * *
63023704 AATCTTCAACCTATTCCACTGCTGACCAGGG-AGATATG-GTTACTGGCTTCAAT-TGACTCCAC
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAG-TA-GAATTACTGGCTTCAATGT-ACTCCAC
* * *
63023766 TGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTACACTACTGCTTAGGGAGATAAGA
63 TATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
63023831 TCTGA
128 TCTGA
63023836 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* *
63023901 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGACCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
63023966 GA
131 GA
63023968 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
63024033 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
63024098 GA
131 GA
* * * *
63024100 AATCTTCAATCTATTCCATTGTTGCCCAGGGAAGTAGACTTGCTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
*
63024165 AACCACAGGAAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
63024230 GA
131 GA
* * * * *
63024232 AATCTTTAATCTATTCCACTGTTGTCGAGGGAAGTAAAATTACTGACTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
*
63024297 AACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCT
63024335 TCGCTGTCAA
Statistics
Matches: 469, Mismatches: 27, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
131 1 0.00
132 465 0.99
133 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (132 bp):
AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
GA
Found at i:63028303 original size:24 final size:24
Alignment explanation
Indices: 63028266--63028311 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
63028256 ATCATTTTTT
* *
63028266 GCTGCTCATTCATTTGCTTTTGAA
1 GCTGCTCATGCATTTCCTTTTGAA
*
63028290 GCTGCTCCTGCATTTCCTTTTG
1 GCTGCTCATGCATTTCCTTTTG
63028312 GGATTGTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.17, T:0.46
Consensus pattern (24 bp):
GCTGCTCATGCATTTCCTTTTGAA
Found at i:63031221 original size:19 final size:19
Alignment explanation
Indices: 63031192--63031298 Score: 135
Period size: 19 Copynumber: 5.6 Consensus size: 19
63031182 ATATCTTCTG
*
63031192 AGATTGCATATCATATCTA
1 AGATTACATATCATATCTA
*
63031211 AGATTATATATCATATCTA
1 AGATTACATATCATATCTA
* *
63031230 AGATTGCGTATCATATCTA
1 AGATTACATATCATATCTA
*
63031249 AGATTATATATTC-TATCTA
1 AGATTACATA-TCATATCTA
*
63031268 AGATTGCATATCATATCTA
1 AGATTACATATCATATCTA
*
63031287 AGATTGCATATC
1 AGATTACATATC
63031299 CCTGAAGATT
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
18 2 0.03
19 72 0.95
20 2 0.03
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.39
Consensus pattern (19 bp):
AGATTACATATCATATCTA
Found at i:63031242 original size:38 final size:38
Alignment explanation
Indices: 63031192--63031291 Score: 175
Period size: 38 Copynumber: 2.6 Consensus size: 38
63031182 ATATCTTCTG
63031192 AGATTGCATATCATATCTAAGATTATATA-TCATATCTA
1 AGATTGCATATCATATCTAAGATTATATATTC-TATCTA
*
63031230 AGATTGCGTATCATATCTAAGATTATATATTCTATCTA
1 AGATTGCATATCATATCTAAGATTATATATTCTATCTA
63031268 AGATTGCATATCATATCTAAGATT
1 AGATTGCATATCATATCTAAGATT
63031292 GCATATCCCT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
38 57 0.97
39 2 0.03
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (38 bp):
AGATTGCATATCATATCTAAGATTATATATTCTATCTA
Found at i:63036768 original size:27 final size:27
Alignment explanation
Indices: 63036731--63037148 Score: 444
Period size: 27 Copynumber: 15.5 Consensus size: 27
63036721 CTTGCGATTC
*
63036731 ATGGG-AAAATGACCGAAAAACCCTCG
1 ATGGGTAAAATGACCGAAATACCCTCG
*
63036757 ATGGGTAAAATGATCGAAATACCCTCG
1 ATGGGTAAAATGACCGAAATACCCTCG
* *
63036784 ATGGATAAAATGACCAAAATACCCTCG
1 ATGGGTAAAATGACCGAAATACCCTCG
* **
63036811 ATGGGTAAAATAATGGAAATACCCTCG
1 ATGGGTAAAATGACCGAAATACCCTCG
* *
63036838 ATGGGTAAAATGATCGAAATTCCCTCG
1 ATGGGTAAAATGACCGAAATACCCTCG
* * * *
63036865 ATGGATAAAATGACTGAAATACCATCA
1 ATGGGTAAAATGACCGAAATACCCTCG
* * **
63036892 ATTGGTAAAATAATTGAAATACCCTCG
1 ATGGGTAAAATGACCGAAATACCCTCG
* * *
63036919 ATGGATAAAATGATCGAAATACCCTTG
1 ATGGGTAAAATGACCGAAATACCCTCG
* * *
63036946 ATGGGTTAAATGACCAAAATACCCTCA
1 ATGGGTAAAATGACCGAAATACCCTCG
* * *
63036973 ATGGTTAAACTGACCAAAATACCCTCG
1 ATGGGTAAAATGACCGAAATACCCTCG
*
63037000 ATGGGTAAAATGATCGAAATACCCTCG
1 ATGGGTAAAATGACCGAAATACCCTCG
* * * *
63037027 ATGGATAAAATGACAGAAATACCATCA
1 ATGGGTAAAATGACCGAAATACCCTCG
* * *
63037054 ATGGGTAAAATGATCAAAATACCCTCC
1 ATGGGTAAAATGACCGAAATACCCTCG
** *
63037081 ATGGGTAAAATGATTGAAATACCCCCG
1 ATGGGTAAAATGACCGAAATACCCTCG
* * * *
63037108 AAGGGTAAAATAACCAAAATACCC-CT
1 ATGGGTAAAATGACCGAAATACCCTCG
63037134 ATAGGGTAAAATGAC
1 AT-GGGTAAAATGAC
63037149 TGTTATACCA
Statistics
Matches: 323, Mismatches: 67, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
26 7 0.02
27 316 0.98
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.22
Consensus pattern (27 bp):
ATGGGTAAAATGACCGAAATACCCTCG
Found at i:63036871 original size:81 final size:81
Alignment explanation
Indices: 63036731--63037145 Score: 521
Period size: 81 Copynumber: 5.1 Consensus size: 81
63036721 CTTGCGATTC
* * *
63036731 ATGGG-AAAATGACCGAAAAACCCTCGATGGGTAAAATGATCGAAATACCCTCGATGGATAAAAT
1 ATGGGTAAAATAATCGAAATACCCTCGATGGGTAAAATGATCGAAATACCCTCGATGGATAAAAT
*
63036795 GACCAAAATACCCTCG
66 GACCAAAATACCCTCA
* *
63036811 ATGGGTAAAATAATGGAAATACCCTCGATGGGTAAAATGATCGAAATTCCCTCGATGGATAAAAT
1 ATGGGTAAAATAATCGAAATACCCTCGATGGGTAAAATGATCGAAATACCCTCGATGGATAAAAT
** *
63036876 GACTGAAATACCATCA
66 GACCAAAATACCCTCA
* * * * * *
63036892 ATTGGTAAAATAATTGAAATACCCTCGATGGATAAAATGATCGAAATACCCTTGATGGGTTAAAT
1 ATGGGTAAAATAATCGAAATACCCTCGATGGGTAAAATGATCGAAATACCCTCGATGGATAAAAT
63036957 GACCAAAATACCCTCA
66 GACCAAAATACCCTCA
* * * * *
63036973 ATGGTTAAACTGACCAAAATACCCTCGATGGGTAAAATGATCGAAATACCCTCGATGGATAAAAT
1 ATGGGTAAAATAATCGAAATACCCTCGATGGGTAAAATGATCGAAATACCCTCGATGGATAAAAT
*
63037038 GA-CAGAAATACCATCA
66 GACCA-AAATACCCTCA
* * * * * * *
63037054 ATGGGTAAAATGATCAAAATACCCTCCATGGGTAAAATGATTGAAATACCCCCGAAGGGTAAAAT
1 ATGGGTAAAATAATCGAAATACCCTCGATGGGTAAAATGATCGAAATACCCTCGATGGATAAAAT
* *
63037119 AACCAAAATACCC-CT
66 GACCAAAATACCCTCA
63037134 ATAGGGTAAAAT
1 AT-GGGTAAAAT
63037146 GACTGTTATA
Statistics
Matches: 289, Mismatches: 42, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
80 10 0.03
81 277 0.96
82 2 0.01
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.22
Consensus pattern (81 bp):
ATGGGTAAAATAATCGAAATACCCTCGATGGGTAAAATGATCGAAATACCCTCGATGGATAAAAT
GACCAAAATACCCTCA
Found at i:63037521 original size:28 final size:28
Alignment explanation
Indices: 63037480--63037590 Score: 159
Period size: 28 Copynumber: 4.0 Consensus size: 28
63037470 ACTGCATTGT
* *
63037480 ACTGTTACTATATTTGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
*
63037508 ACTGTTATTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
63037536 ACTGTTACTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
* * * *
63037564 ACCGTTGCTGTATAGGGCTCAGGCCCA
1 ACTGTTACTGTATTGGGCTAAGGCCCA
63037591 GTTTGCTACT
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 75 1.00
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:63044448 original size:27 final size:27
Alignment explanation
Indices: 63044405--63044742 Score: 269
Period size: 27 Copynumber: 12.6 Consensus size: 27
63044395 CTTGCGATTC
* * *
63044405 ATGGGT-AAATGATTGAAATAACCTCA
1 ATGGGTAAAATGACTGAAATACCCTCG
63044431 ATGGGTAAAATGACTGAAATACCCTCG
1 ATGGGTAAAATGACTGAAATACCCTCG
* ** ** *
63044458 ATGGATAAAATTTCCAAAATACCCTCA
1 ATGGGTAAAATGACTGAAATACCCTCG
** *
63044485 ATGGGTAAAATGACCAAAATACCTTCG
1 ATGGGTAAAATGACTGAAATACCCTCG
* * *
63044512 ATGAGTAAAATG-GTCGAAATATCCTCG
1 ATGGGTAAAATGACT-GAAATACCCTCG
* * *
63044539 ATGGATAAAATCATTGAAATACCCTCG
1 ATGGGTAAAATGACTGAAATACCCTCG
* *
63044566 ATGGGTAAAAT-AATCAAAATACCCTCG
1 ATGGGTAAAATGACT-GAAATACCCTCG
* * * * *
63044593 ATGAGTAAAATTACCGAGATACCCTCA
1 ATGGGTAAAATGACTGAAATACCCTCG
* *
63044620 ATGGGTAAAATGA-TCGAAATACCTTTG
1 ATGGGTAAAATGACT-GAAATACCCTCG
* *
63044647 ATGTGTAAAATGACTGAAATACCCTCA
1 ATGGGTAAAATGACTGAAATACCCTCG
*
63044674 ATAGGTAAAATGA-TCGAAATACCCTCG
1 ATGGGTAAAATGACT-GAAATACCCTCG
* * *
63044701 AAGGATAAAATGA-TCGTAATA-CCTC-
1 ATGGGTAAAATGACT-GAAATACCCTCG
63044726 ATAGGGTAAAATGACTG
1 AT-GGGTAAAATGACTG
63044743 TTATACCCCT
Statistics
Matches: 248, Mismatches: 54, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
25 1 0.00
26 24 0.10
27 220 0.89
28 3 0.01
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.25
Consensus pattern (27 bp):
ATGGGTAAAATGACTGAAATACCCTCG
Found at i:63044520 original size:81 final size:82
Alignment explanation
Indices: 63044420--63044740 Score: 313
Period size: 81 Copynumber: 4.0 Consensus size: 82
63044410 TAAATGATTG
* * * *
63044420 AAATAACCTCAATGGGTAAAATGACT-GAAATACCCTCGATGGATAAAAT-TTCCAAAATACCCT
1 AAATACCCTCGATGAGTAAAATGACTCGAAATACCCTCGATGGATAAAATATT-CGAAATACCCT
*
63044483 CAATGGGTAAAATGACCA
65 CGATGGGTAAAATGACCA
* * *
63044501 AAATACCTTCGATGAGTAAAATG-GTCGAAATATCCTCGATGGATAAAATCATT-GAAATACCCT
1 AAATACCCTCGATGAGTAAAATGACTCGAAATACCCTCGATGGATAAAAT-ATTCGAAATACCCT
* *
63044564 CGATGGGTAAAATAATCA
65 CGATGGGTAAAATGACCA
* * * * *
63044582 AAATACCCTCGATGAGTAAAATTAC-CGAGATACCCTCAATGGGTAAAATGA-TCGAAATACCTT
1 AAATACCCTCGATGAGTAAAATGACTCGAAATACCCTCGATGGATAAAAT-ATTCGAAATACCCT
* * **
63044645 TGATGTGTAAAATGACTG
65 CGATGGGTAAAATGACCA
* * *
63044663 AAATACCCTCAAT-AGGTAAAATGA-TCGAAATACCCTCGAAGGATAAAATGA-TCGTAATA-CC
1 AAATACCCTCGATGA-GTAAAATGACTCGAAATACCCTCGATGGATAAAAT-ATTCGAAATACCC
63044724 TC-ATAGGGTAAAATGAC
64 TCGAT-GGGTAAAATGAC
63044741 TGTTATACCC
Statistics
Matches: 197, Mismatches: 35, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
79 2 0.01
80 16 0.08
81 177 0.90
83 2 0.01
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (82 bp):
AAATACCCTCGATGAGTAAAATGACTCGAAATACCCTCGATGGATAAAATATTCGAAATACCCTC
GATGGGTAAAATGACCA
Found at i:63052285 original size:27 final size:27
Alignment explanation
Indices: 63052253--63052323 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
63052243 ATATAGAGTA
*
63052253 TGCCACCAAGGCATTCCATTCAGAA-TT
1 TGCCACAAAGGCATTCCATTCA-AAGTT
* * *
63052280 TGCCACAAATGAATTCCTTTCAAAGTT
1 TGCCACAAAGGCATTCCATTCAAAGTT
63052307 TGCCACAAAGGCTATTC
1 TGCCACAAAGGC-ATTC
63052324 TTAGTTGCCA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.06
27 30 0.83
28 4 0.11
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (27 bp):
TGCCACAAAGGCATTCCATTCAAAGTT
Found at i:63056134 original size:75 final size:76
Alignment explanation
Indices: 63056044--63056197 Score: 256
Period size: 75 Copynumber: 2.0 Consensus size: 76
63056034 ATGTTGTTGT
* *
63056044 AATGTTTAATTTAATCAATTTAGCTTGAATTTAATTCGTGTTAGGTTGATTGCACTTCATTTGTT
1 AATGGTTAATTTAATCAAATTAGCTTGAATTTAATTCGTGTTAGGTTGATTGCACTTCATTTGTT
63056109 AAAACTATT-A
66 AAAACTATTGA
* *
63056119 AATGGTTAATTTAATCAAATTAGCTTGAATTTAATTCGTGTTAGGTTGATTGCATTTCGTTTGTT
1 AATGGTTAATTTAATCAAATTAGCTTGAATTTAATTCGTGTTAGGTTGATTGCACTTCATTTGTT
*
63056184 AAAATTATTGA
66 AAAACTATTGA
63056195 AAT
1 AAT
63056198 TGTGGTTATG
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
75 69 0.95
76 4 0.05
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (76 bp):
AATGGTTAATTTAATCAAATTAGCTTGAATTTAATTCGTGTTAGGTTGATTGCACTTCATTTGTT
AAAACTATTGA
Found at i:63057278 original size:27 final size:27
Alignment explanation
Indices: 63057246--63057316 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
63057236 ATATAGAGTA
*
63057246 TGCCACCAAGGCATTCCATTCAGAA-TT
1 TGCCACAAAGGCATTCCATTCA-AAGTT
* * *
63057273 TGCCACAAATGAATTCCTTTCAAAGTT
1 TGCCACAAAGGCATTCCATTCAAAGTT
63057300 TGCCACAAAGGCTATTC
1 TGCCACAAAGGC-ATTC
63057317 TTAGTTGCCA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.06
27 30 0.83
28 4 0.11
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (27 bp):
TGCCACAAAGGCATTCCATTCAAAGTT
Found at i:63077300 original size:30 final size:29
Alignment explanation
Indices: 63077259--63077326 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 29
63077249 AAAAAGTGTG
* *
63077259 CTAAACGATGGTGGTAACCATCCCTTTTC
1 CTAATCGATGGTCGTAACCATCCCTTTTC
* *
63077288 ATTAATCGATGGTCGTCACCATCCCTTTTC
1 -CTAATCGATGGTCGTAACCATCCCTTTTC
63077318 CTAATCGAT
1 CTAATCGAT
63077327 AGCCAAAGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
29 8 0.24
30 25 0.76
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.34
Consensus pattern (29 bp):
CTAATCGATGGTCGTAACCATCCCTTTTC
Found at i:63078129 original size:5 final size:5
Alignment explanation
Indices: 63078119--63078148 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
63078109 CATGTTAACC
63078119 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
63078149 ATATAATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:63085440 original size:73 final size:73
Alignment explanation
Indices: 63085301--63085442 Score: 203
Period size: 73 Copynumber: 1.9 Consensus size: 73
63085291 ATCTATTTTC
* * *
63085301 TTTTTAAGAATTTGAAAACTCTTTTAGATATAATTTTGTTTTCAATAAATTAACATAGCAGATTT
1 TTTTTAAGAATTTGAAAACTCTTTTAAATATAATATTGTTTTCAATAAATTAACATACCAGATTT
63085366 TTTTAACT
66 TTTTAACT
* * * * **
63085374 TTTTTAAGAATTTTAGAACTCTTTTAAATTTAATATTGTTTTCAATAAATTAACTTACCATTTTT
1 TTTTTAAGAATTTGAAAACTCTTTTAAATATAATATTGTTTTCAATAAATTAACATACCAGATTT
63085439 TTTT
66 TTTT
63085443 TACCTATTTA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
73 60 1.00
ACGTcount: A:0.34, C:0.08, G:0.06, T:0.51
Consensus pattern (73 bp):
TTTTTAAGAATTTGAAAACTCTTTTAAATATAATATTGTTTTCAATAAATTAACATACCAGATTT
TTTTAACT
Found at i:63089894 original size:39 final size:40
Alignment explanation
Indices: 63089851--63089955 Score: 104
Period size: 44 Copynumber: 2.5 Consensus size: 40
63089841 TTCCATTATG
63089851 CTATTACACCTCTATTTCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTTCATTCAACCAAACACAAGATTTA
* *** *
63089890 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTA-T---TT-CATTCAACCAAACACAAGATTTA
*
63089935 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTTCATT
63089956 ACACCTCTAA
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
39 13 0.25
40 5 0.09
41 1 0.02
43 2 0.04
44 17 0.32
45 15 0.28
ACGTcount: A:0.31, C:0.29, G:0.05, T:0.35
Consensus pattern (40 bp):
CTATTACACCTCTATTTCATTCAACCAAACACAAGATTTA
Found at i:63089949 original size:45 final size:44
Alignment explanation
Indices: 63089849--63089958 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
63089839 TTTTCCATTA
63089849 TGCTATTACACCTCTA-T---TT-CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
63089888 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
63089933 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
63089959 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 14 0.24
40 1 0.02
43 2 0.03
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:63089958 original size:16 final size:16
Alignment explanation
Indices: 63089939--63089990 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
63089929 GATTTGCTAT
* *
63089939 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
63089955 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
63089971 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
63089987 TACA
1 TACA
63089991 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:63092778 original size:14 final size:13
Alignment explanation
Indices: 63092759--63092791 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
63092749 CTTTTAACTT
63092759 TTATATATATTATA
1 TTATATATA-TATA
63092773 TTATATATATATA
1 TTATATATATATA
63092786 TT-TATA
1 TTATATA
63092792 CATTTGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.21
13 6 0.32
14 9 0.47
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TTATATATATATA
Found at i:63099195 original size:45 final size:45
Alignment explanation
Indices: 63099146--63100505 Score: 1028
Period size: 45 Copynumber: 30.4 Consensus size: 45
63099136 GTTGAGAAGC
* * * ** * *
63099146 AGCAGGTCTTGTCTTCCTATATTGGCAGTGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * * ** * *
63099191 AGCAGGTCTTGTCTTCCTATATTGGCAGCGAAGTAGA-CTGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC-GAAGAA
** * ** * *
63099236 AGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGA-CTGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATC-GAAGAA
* ** * * * *
63099281 AGTAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATCGAAAAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* *** * * * * *
63099326 AGTAGATCTTGTCTTCATGTATTGG-CGTAAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * ** * * * * * *
63099370 AGCAGGTCCTGTCTTCTTATATTGGTAGCGAAGTGGATCGAATAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * * *
63099415 A-CAGATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAAAAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAA-G---AA
* *** * * * *
63099463 AGTAGATCTTGTCTTCATGTA-TCAG-CGTGAAGTAGATCAAAGTCA
1 AGCAGATCTTGTCTTCCCATACT-GGTGGTGAAGTAGATCGAAG-AA
* * *
63099508 A-CAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* *** * * *
63099552 AGCAGATTTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * *
63099596 A-CAGATATTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* *** * * *
63099640 AACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * * *
63099684 ACCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATTGAAGAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* *
63099729 AGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * * *
63099774 ACCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAAATCGAAGAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * *** * * *
63099819 AGCAAATATTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * * *
63099863 ACCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATTGAAGAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * * * *
63099908 AGCAAATCTTATCTCCCCATACTGGTGGTGGAGTAGATTGAAGAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* *
63099953 AGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * *
63099998 ACCAGATCTTGTC-TCTCCATACTAGTGGTGGAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTC-CCATACTGGTGGTGAAGTAGATCGAAGAA
*** * * *
63100043 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * * * *
63100087 ACCAGATATTGTCTCCCCATATTGGTGGTGGAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* *** * * *
63100132 AACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * * *
63100176 ACCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATTGAAGAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * *
63100221 AGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * *
63100266 ATCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGAGT-GAAGAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGA-TCGAAGAA
* * *
63100311 AGCAGATCTTTTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAG
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * **** * * * * *
63100356 AGCAAATCTTATCTTTATGTATTGG-CGTAAAGCAGATTG-AGTAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAG-AA
* *** * * *
63100400 AACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATTGAAGAA
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
* * *
63100444 AGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAT
1 AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
63100489 AGCAGATCTTGTCTTCC
1 AGCAGATCTTGTCTTCC
63100506 TGTAGTGGCA
Statistics
Matches: 1068, Mismatches: 222, Indels: 50
0.80 0.17 0.04
Matches are distributed among these distances:
43 19 0.02
44 320 0.30
45 695 0.65
46 4 0.00
47 1 0.00
48 15 0.01
49 14 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (45 bp):
AGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAA
Found at i:63099587 original size:89 final size:89
Alignment explanation
Indices: 63099177--63100502 Score: 870
Period size: 89 Copynumber: 14.8 Consensus size: 89
63099167 TTGGCAGTGA
* * * * * * *
63099177 AGTAGATCAAAGATAGCAGGTCTTGTCTTCCTATATTGGCAGCGAAGTAGA-CTGAAGATAGCAG
1 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATC-GAAGATAACAG
* ** * ** * *
63099241 ATCTTGTCTTCCTGTATTGGCAGCGA
64 ATCTTGTCTCCCCATACTGGTGGTGG
* * * * * * *
63099267 AGTAGA-CTGAAGATAGTAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATCGAA-AAAAGTA
1 AGTAGATC-GAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAA-CA
* *** * * **
63099330 GATCTTGTCTTCATGTATTGG-CGTAA
63 GATCTTGTCTCCCCATACTGGTGGTGG
* * * * * * * * * *
63099356 AGTAGATCAAAGATAGCAGGTCCTGTCTTCTTATATTGGTAGCGAAGTGGATCGAATAT-ACAGA
1 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAACAGA
* * * * *
63099420 TCTCGCCTTCCCATACTGGTGGCGA
65 TCTTGTCTCCCCATACTGGTGGTGG
* * ** *
63099445 AGCAGATCGAAGGAAAAAAGTAGATCTTGTCTTCATGTATCAGCGTGAAGTAGATCAAAG-TCAA
1 AGTAGATCGAA-G---AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT-AA
63099509 CAGATCTTGTCTCCCCATACTGGTGGTGG
61 CAGATCTTGTCTCCCCATACTGGTGGTGG
* * *
63099538 AGTAGATCAAAGAAAGCAGATTTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGA-AACAGAT
1 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGAT
*
63099602 ATTGTCTCCCCATACTGGTGGTGG
66 CTTGTCTCCCCATACTGGTGGTGG
* *
63099626 AGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATACCAGAT
1 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGAT
63099691 CTTGTCTCCCCATACTGGTGGTGG
66 CTTGTCTCCCCATACTGGTGGTGG
* * *** * * *
63099715 AGTAGATTGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGATACCAGA
1 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAACAGA
63099780 TCTTGTCTCCCCATACTGGTGGTGG
65 TCTTGTCTCCCCATACTGGTGGTGG
* * * *
63099805 AGTAAATCGAAGAAAGCAAATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATACCAGAT
1 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGAT
63099870 CTTGTCTCCCCATACTGGTGGTGG
66 CTTGTCTCCCCATACTGGTGGTGG
* * * * *** * * * *
63099894 AGTAGATTGAAGAAAGCAAATCTTATCTCCCCATACTGGTGGTGGAGTAGATTGAAGA-AAGCAG
1 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAA-CAG
*
63099958 ATCTTGTCTCCCCATACTGGTGGTGA
64 ATCTTGTCTCCCCATACTGGTGGTGG
* * * * *
63099984 AGTAGATCGAAGATACCAGATCTTGTCTCTCCATACTAGT-G-GTGGAGTAGATCGAAGA-AAGC
1 AGTAGATCGAAGAAAGCAGATCTTGTCT-T-CAT-GTATTGGCGTGAAGTAGATCGAAGATAA-C
* *** * * *
63100046 AGATCTTGTCTTCATGTATTGG-CGTGA
62 AGATCTTGTCTCCCCATACTGGTGGTGG
* * * * *** * * *
63100073 AGTAGATCGAAGATACCAGATATTGTCTCCCCATATTGGTGGTGGAGTAGATCGAAGAAAACAGA
1 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAACAGA
* *** * * *
63100138 TCTTGTCTTCATGTATTGG-CGTGA
65 TCTTGTCTCCCCATACTGGTGGTGG
* * * *** * * * *
63100162 AGTAGATCGAAGATACCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATTGAAGA-AAGCAG
1 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAA-CAG
*
63100226 ATCTTGTCTCCCCATACTGGTGGTGA
64 ATCTTGTCTCCCCATACTGGTGGTGG
* * * * *** * * *
63100252 AGTAGATCAAAGATATCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGAGT-GAAGA-AAGCA
1 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGA-TCGAAGATAA-CA
* * * *
63100315 GATCTTTTCTTCCCATACTGGTGGCGA
63 GATCTTGTCTCCCCATACTGGTGGTGG
* * * * * * * *
63100342 AGTAGATCGAAGAGAGCAAATCTTATCTTTATGTATTGGCGTAAAGCAGATTG-AGTAAAACAGA
1 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG-ATAACAGA
* *** * * *
63100406 TCTTGTCTTCATGTATTGG-CGTGA
65 TCTTGTCTCCCCATACTGGTGGTGG
* *** * * * * *
63100430 AGTAGATTGAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGATAGCAGA
1 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAACAGA
63100495 TCTTGTCT
65 TCTTGTCT
63100503 TCCTGTAGTG
Statistics
Matches: 1032, Mismatches: 171, Indels: 67
0.81 0.13 0.05
Matches are distributed among these distances:
86 3 0.00
87 2 0.00
88 137 0.13
89 443 0.43
90 373 0.36
91 3 0.00
92 15 0.01
93 56 0.05
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (89 bp):
AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAACAGAT
CTTGTCTCCCCATACTGGTGGTGG
Found at i:63099851 original size:179 final size:179
Alignment explanation
Indices: 63099173--63100502 Score: 1113
Period size: 179 Copynumber: 7.4 Consensus size: 179
63099163 TATATTGGCA
* * * * * * ** * *
63099173 GTGAAGTAGATCAAAGATAGCAGGTCTTGTCTTCCTATATTGGCAGCGAAGTAGA-CTGAAGATA
1 GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATC-GAAGAAA
* ** * ** * * ** *
63099237 GCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGA-CTGAAGATAGTAGATCTTGTCTTCCTGT
65 GCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATC-GAAGAAACCAGATCTTGTCTTCATGT
* * * * *** * *
63099301 ATTGGTAGCGAAGTAGATCGAA-AAAAGTAGATCTTGTCTTCATGTATTGG-C
129 ATTGG-CGTGAAGTAGATCGAAGAAAA-CAGATCTTGTCTCCCCATACTGGTG
* * * * * * ** * * * * * *
63099352 GTAAAGTAGATCAAAGATAGCAGGTCCTGTCTTCTTATATTGGTAGCGAAGTGGATCGAATATA-
1 GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAAAG
* * * * * **
63099416 CAGATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAAAAAAGTAGATCTTGTCTTCAT
66 CAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAA-G---AAACCAGATCTTGTCTTCAT
** * **
63099481 GTATCAGCGTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTG
127 GTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTCCCCATACTGGTG
* * * * *** * * *
63099534 GTGGAGTAGATCAAAGAAAGCAGATTTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGAAA-
1 GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAAAG
* * *
63099597 CAGATATTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTAT
66 CAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAAACCAGATCTTGTCTTCATGTAT
* *
63099662 TGGCGTGAAGTAGATCGAAGATACCAGATCTTGTCTCCCCATACTGGTG
131 TGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTCCCCATACTGGTG
* * * *
63099711 GTGGAGTAGATTGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGATAC
1 GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAAAG
* * * * *
63099776 CAGATCTTGTCTCCCCATACTGGTGGTGGAGTAAATCGAAGAAAGCAAATATTGTCTTCATGTAT
66 CAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAAACCAGATCTTGTCTTCATGTAT
* *
63099841 TGGCGTGAAGTAGATCGAAGATACCAGATCTTGTCTCCCCATACTGGTG
131 TGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTCCCCATACTGGTG
* * * * * *
63099890 GTGGAGTAGATTGAAGAAAGCAAATCTTATCTCCCCATACTGGTGGTGGAGTAGATTGAAGAAAG
1 GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAAAG
* *
63099955 CAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGATACCAGATCTTGTCTCTCCATAC
66 CAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAAACCAGATCTTGTCT-T-CAT-G
* * * * *** * *
63100020 TAGT-G-GTGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-C
128 TATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTCCCCATACTGGTG
* * * * * *
63100069 GTGAAGTAGATCGAAGATACCAGATATTGTCTCCCCATATTGGTGGTGGAGTAGATCGAAGAAAA
1 GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAAAG
* *** * * * * *** *
63100134 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATACCAGATCTTGTCTCCCCATAC
66 CAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAAACCAGATCTTGTCTTCATGTAT
* * * *
63100198 TGGTGGTGGAGTAGATTGAAGAAAGCAGATCTTGTCTCCCCATACTGGTG
131 TGG-CGTGAAGTAGATCGAAGAAAACAGATCTTGTCTCCCCATACTGGTG
* * * *
63100248 GTGAAGTAGATCAAAGATATCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGAGT-GAAGAAA
1 GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGA-TCGAAGAAA
* * * * * * * *
63100312 GCAGATCTTTTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAGAGCAAATCTTATCTTTATGTA
65 GCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAAACCAGATCTTGTCTTCATGTA
* * * * *** * *
63100377 TTGGCGTAAAGCAGATTG-AGTAAAACAGATCTTGTCTTCATGTATTGG-C
130 TTGGCGTGAAGTAGATCGAAG-AAAACAGATCTTGTCTCCCCATACTGGTG
* * * * *
63100426 GTGAAGTAGATTGAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGATAG
1 GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAAAG
63100491 CAGATCTTGTCT
66 CAGATCTTGTCT
63100503 TCCTGTAGTG
Statistics
Matches: 961, Mismatches: 169, Indels: 43
0.82 0.14 0.04
Matches are distributed among these distances:
175 3 0.00
176 2 0.00
177 101 0.11
178 183 0.19
179 457 0.48
180 71 0.07
181 81 0.08
182 63 0.07
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (179 bp):
GTGAAGTAGATCGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAAAG
CAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGAAACCAGATCTTGTCTTCATGTAT
TGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTCCCCATACTGGTG
Found at i:63100378 original size:313 final size:313
Alignment explanation
Indices: 63099582--63100502 Score: 1197
Period size: 313 Copynumber: 2.9 Consensus size: 313
63099572 ATTGGCGTGA
** *
63099582 AGTAGATCAAAGAAA-CAGATATTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAGAAAACAGA
1 AGTAGATTGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAGAAAACAGA
* *** * * *
63099646 TCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATACCAGATCTTGTCTCCCCATACTGGT
66 TCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGATACCAGATCTTGTCTTCCCATACTGGT
* * *** * *
63099710 GGTGGAGTAGATTGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGATA
131 GGTGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATA
* * * *
63099775 CCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAAATCGAAGAAAGCAAATATTGTCTTCATGTA
195 CCAGATCTTGTCTCCCCATATTGGTGGTGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA
63099840 TTGGCGTGAAGTAGATCGAAGATACCAGATCTTGTCTCCCCATACTGGTGGTGG
260 TTGGCGTGAAGTAGATCGAAGATACCAGATCTTGTCTCCCCATACTGGTGGTGG
* * * *
63099894 AGTAGATTGAAGAAAGCAAATCTTATCTCCCCATACTGGTGGTGGAGTAGATTGAAGAAAGCAGA
1 AGTAGATTGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAGAAAACAGA
*
63099959 TCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGATACCAGATCTTGTC-TCTCCATACTAG
66 TCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGATACCAGATCTTGTCTTC-CCATACTGG
63100023 TGGTGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
130 TGGTGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
* *
63100088 CCAGATATTGTCTCCCCATATTGGTGGTGGAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTA
195 CCAGATCTTGTCTCCCCATATTGGTGGTGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA
63100153 TTGGCGTGAAGTAGATCGAAGATACCAGATCTTGTCTCCCCATACTGGTGGTGG
260 TTGGCGTGAAGTAGATCGAAGATACCAGATCTTGTCTCCCCATACTGGTGGTGG
* * * *
63100207 AGTAGATTGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGAAGTAGATCAAAGATATCAGA
1 AGTAGATTGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAGAAAACAGA
* * * *
63100272 TCTTGTCTCCCCATACTGGTGGTGGAGTAGAGT-GAAGAAAGCAGATCTTTTCTTCCCATACTGG
66 TCTTGTCTCCCCATACTGGTGGTGAAGTAGA-TCGAAGATACCAGATCTTGTCTTCCCATACTGG
* * * * * * * * * *
63100336 TGGCGAAGTAGATCGAAGAGAGCAAATCTTATCTTTATGTATTGGCGTAAAGCAGATTG-AGTAA
130 TGGTGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG-AT
* * *** * * * ***
63100400 AACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATTGAAGAAAGCAGATCTTGTCTTCCCAT
194 ACCAGATCTTGTCTCCCCATATTGGTGGTGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGT
* * * * *
63100464 ACTGGTGGCGAAGTAGATCAAAGATAGCAGATCTTGTCT
259 ATTGG-CGTGAAGTAGATCGAAGATACCAGATCTTGTCT
63100503 TCCTGTAGTG
Statistics
Matches: 534, Mismatches: 68, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
312 51 0.10
313 402 0.75
314 81 0.15
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (313 bp):
AGTAGATTGAAGAAAGCAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCGAAGAAAACAGA
TCTTGTCTCCCCATACTGGTGGTGAAGTAGATCGAAGATACCAGATCTTGTCTTCCCATACTGGT
GGTGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAC
CAGATCTTGTCTCCCCATATTGGTGGTGGAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
TGGCGTGAAGTAGATCGAAGATACCAGATCTTGTCTCCCCATACTGGTGGTGG
Found at i:63100420 original size:44 final size:44
Alignment explanation
Indices: 63100361--63100459 Score: 137
Period size: 44 Copynumber: 2.2 Consensus size: 44
63100351 AAGAGAGCAA
* *
63100361 ATCTTATCTTTATGTATTGGCGTAAAGCAGATTG-AGTAAAACAG
1 ATCTTGTCTTCATGTATTGGCGTAAAGCAGATTGAAG-AAAACAG
* * *
63100405 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATTGAAGAAAGCAG
1 ATCTTGTCTTCATGTATTGGCGTAAAGCAGATTGAAGAAAACAG
63100449 ATCTTGTCTTC
1 ATCTTGTCTTC
63100460 CCATACTGGT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
44 47 0.96
45 2 0.04
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.35
Consensus pattern (44 bp):
ATCTTGTCTTCATGTATTGGCGTAAAGCAGATTGAAGAAAACAG
Found at i:63102199 original size:14 final size:13
Alignment explanation
Indices: 63102180--63102212 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
63102170 CTTTTAACTT
63102180 TTATATATATTATA
1 TTATATATA-TATA
63102194 TTATATATATATA
1 TTATATATATATA
63102207 TT-TATA
1 TTATATA
63102213 CATTTGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.21
13 6 0.32
14 9 0.47
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TTATATATATATA
Found at i:63102324 original size:6 final size:6
Alignment explanation
Indices: 63102313--63102346 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
63102303 ATATGTACAT
63102313 ATATAC ATATAC ATATAC ATATAC ATATAC ATAT
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATAT
63102347 TTTAATACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (6 bp):
ATATAC
Found at i:63115168 original size:6 final size:6
Alignment explanation
Indices: 63115157--63115186 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
63115147 TTTTATCTCA
63115157 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
63115187 GAAGTCCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTC
Found at i:63121340 original size:28 final size:28
Alignment explanation
Indices: 63121289--63121346 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
63121279 TTAGTCTTTC
*
63121289 AATTAATTTGCTCATTTCCAATTATACT
1 AATTAATTTGCTCATTTCCAATTAGACT
* *
63121317 AATTAATTTGCTCATTTTCGATTAGACT
1 AATTAATTTGCTCATTTCCAATTAGACT
63121345 AA
1 AA
63121347 GGACATGTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.07, T:0.45
Consensus pattern (28 bp):
AATTAATTTGCTCATTTCCAATTAGACT
Found at i:63141552 original size:27 final size:27
Alignment explanation
Indices: 63141523--63141608 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 27
63141513 TTTCTTTCGT
* *
63141523 AGTTCGCCATGAATACCATTCATTTAT
1 AGTTCGCCATGAGTACCATTCATTTAG
*
63141550 AGTTCGCCATGAGTACCATTCCTTTAG
1 AGTTCGCCATGAGTACCATTCATTTAG
* * * *
63141577 GGTTCGCTATGAGTACTATTCTTTTAG
1 AGTTCGCCATGAGTACCATTCATTTAG
63141604 AGTTC
1 AGTTC
63141609 TCCACAGAGG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.38
Consensus pattern (27 bp):
AGTTCGCCATGAGTACCATTCATTTAG
Found at i:63141728 original size:27 final size:27
Alignment explanation
Indices: 63141698--63141783 Score: 129
Period size: 27 Copynumber: 3.2 Consensus size: 27
63141688 CAAAGATTTG
63141698 CCACAAAGGCTTTCTTTTCATGGTTCA
1 CCACAAAGGCTTTCTTTTCATGGTTCA
*
63141725 CCACAAGGGCTTTC-TTTCATGGTTCA
1 CCACAAAGGCTTTCTTTTCATGGTTCA
* * *
63141751 CCACAAAGCCTTTATTTTCATGGTTCG
1 CCACAAAGGCTTTCTTTTCATGGTTCA
63141778 CCACAA
1 CCACAA
63141784 TGACTTTTGT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
26 23 0.43
27 30 0.57
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (27 bp):
CCACAAAGGCTTTCTTTTCATGGTTCA
Found at i:63148018 original size:14 final size:14
Alignment explanation
Indices: 63147999--63148038 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
63147989 TTGATTGCCA
63147999 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
63148013 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
63148027 GGAAAATGTTTT
1 GTAAAATGTTTT
63148039 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:63148045 original size:34 final size:35
Alignment explanation
Indices: 63148007--63148073 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
63147997 CAGTAAAATG
*
63148007 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
63148041 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
63148074 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:63148047 original size:20 final size:20
Alignment explanation
Indices: 63148022--63148061 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
63148012 CGTAAAATGA
*
63148022 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
63148042 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
63148062 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:63148077 original size:14 final size:15
Alignment explanation
Indices: 63148001--63148077 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
63147991 GATTGCCAGT
* *
63148001 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
63148015 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
63148029 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
63148049 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
63148064 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
63148078 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:63148230 original size:22 final size:24
Alignment explanation
Indices: 63148205--63148255 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
63148195 TTATTTATAA
63148205 ATAAATAA-A-TCAA-ATT-AAAT
1 ATAAATAATACTCAATATTAAAAT
63148225 ATATAATAATACTCAATTATTAAAAT
1 ATA-AATAATACTCAA-TATTAAAAT
63148251 ATAAA
1 ATAAA
63148256 AGCATTGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
20 3 0.12
21 5 0.20
22 1 0.04
23 4 0.16
25 5 0.20
26 7 0.28
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (24 bp):
ATAAATAATACTCAATATTAAAAT
Found at i:63149141 original size:22 final size:24
Alignment explanation
Indices: 63149116--63149166 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
63149106 TTATTTATAA
63149116 ATAAATAA-A-TCAA-ATT-AAAT
1 ATAAATAATACTCAATATTAAAAT
63149136 ATATAATAATACTCAATTATTAAAAT
1 ATA-AATAATACTCAA-TATTAAAAT
63149162 ATAAA
1 ATAAA
63149167 AGCATTGCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
20 3 0.12
21 5 0.20
22 1 0.04
23 4 0.16
25 5 0.20
26 7 0.28
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (24 bp):
ATAAATAATACTCAATATTAAAAT
Found at i:63152189 original size:6 final size:6
Alignment explanation
Indices: 63152158--63152187 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
63152148 GGTGTCAAGC
*
63152158 GAAGGG GAAGGG GAAGGG GAAGGG AAAGGG
1 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG
63152188 AAGATCGGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (6 bp):
GAAGGG
Found at i:63162027 original size:22 final size:22
Alignment explanation
Indices: 63161985--63162027 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
63161975 CTTCAGAATC
* *
63161985 AACTTTTCTCTTTTCTTTGCTA
1 AACTCTTCTCTTTTCTGTGCTA
63162007 AACTCTTCATCTTTT-TGTGCT
1 AACTCTTC-TCTTTTCTGTGCT
63162028 TTGTCAACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.14, C:0.23, G:0.07, T:0.56
Consensus pattern (22 bp):
AACTCTTCTCTTTTCTGTGCTA
Found at i:63171626 original size:35 final size:35
Alignment explanation
Indices: 63171573--63171651 Score: 142
Period size: 35 Copynumber: 2.3 Consensus size: 35
63171563 TTTTCTTCCA
63171573 AATTATT-ATTCATTCATAATCATATGGTACAAAT
1 AATTATTCATTCATTCATAATCATATGGTACAAAT
*
63171607 TATTATTCATTCATTCATAATCATATGGTACAAAT
1 AATTATTCATTCATTCATAATCATATGGTACAAAT
63171642 AATTATTCAT
1 AATTATTCAT
63171652 GAATTTATAC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
34 6 0.14
35 36 0.86
ACGTcount: A:0.39, C:0.13, G:0.05, T:0.43
Consensus pattern (35 bp):
AATTATTCATTCATTCATAATCATATGGTACAAAT
Found at i:63172412 original size:15 final size:16
Alignment explanation
Indices: 63172377--63172412 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
63172367 AATCAAAAAT
63172377 AAAAGAAAAAAGAAGA
1 AAAAGAAAAAAGAAGA
63172393 AAAAGAAAAAA-AAGA
1 AAAAGAAAAAAGAAGA
63172408 AAAAG
1 AAAAG
63172413 GAGAGGTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAGAAGA
Found at i:63174818 original size:128 final size:128
Alignment explanation
Indices: 63174549--63174836 Score: 357
Period size: 128 Copynumber: 2.2 Consensus size: 128
63174539 GTGAATTTAG
* * * * * *
63174549 CAGATCTTGTCTCCCTAAGCAGTAGCGGAGGAGATCGAAGATAGTGAATCTTATCTTCAAGTGTA
1 CAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGAATCTTATCTTCAAGTGTA
* * **
63174614 AGGAAGCAAATTTAAGCCACAAGTCCTATCTCCCTAGTCAGCAGTGGAGTAGGTTGGAAATTA
66 AGGAAGCAAATTTAAGCCACAAGTCCTATCTCCCTAGTCAGAAGTGGAGTAGATTGGAAACGA
* *
63174677 CAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGAATCTTATCTTCAAGTGTA
1 CAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGAATCTTATCTTCAAGTGTA
* *
63174742 AGGAAGCAGATTTAAGCCACAAGTCCTATCTCCCTGAGGT-TGAAGTGGAGTAGATT-GAAGACG
66 AGGAAGCAAATTTAAGCCACAAGTCCTATCTCCCT-A-GTCAGAAGTGGAGTAGATTGGAA-ACG
63174805 A
128 A
* * **
63174806 TA-ATCCTATCTCCTTCAAGTTGTAGTGGAGC
1 CAGATCCTATCTCCCT-AAGCAGTAGTGGAGC
63174837 GGATTAAAGT
Statistics
Matches: 140, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
128 108 0.77
129 30 0.21
130 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (128 bp):
CAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGAATCTTATCTTCAAGTGTA
AGGAAGCAAATTTAAGCCACAAGTCCTATCTCCCTAGTCAGAAGTGGAGTAGATTGGAAACGA
Found at i:63175033 original size:50 final size:50
Alignment explanation
Indices: 63174967--63175626 Score: 350
Period size: 50 Copynumber: 13.2 Consensus size: 50
63174957 GCAATGGAAC
* * * *
63174967 AAGATGAAAGCCACAACAGTGAATCTTGCTTCCTCGACATTGCCGTTAAA
1 AAGATTAAAGCCACAACAGCGAATCTTACTTCCTCGACATTGCAGTTAAA
* * * **
63175017 ATGATTAAAGCCACAACAGTGAATCTTACTT-GTC-A-AGTGGTGCAGTGGAA
1 AAGATTAAAGCCACAACAGCGAATCTTACTTCCTCGACA-T--TGCAGTTAAA
* * * * * *
63175067 TAGATTAACA-CCACAACGGCGAACCTTGCTTCC-CTGACATTGTAGTGAAA
1 AAGATTAA-AGCCACAACAGCGAATCTTACTTCCTC-GACATTGCAGTTAAA
* * * * ** **
63175117 AAGATTAAAGCTACCACAGTGAATCTTACTT-CTCAAGCGGTGCAGTGGAA
1 AAGATTAAAGCCACAACAGCGAATCTTACTTCCTCGA-CATTGCAGTTAAA
* * * * *
63175167 AAGATTAACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAA
1 AAGATTAAAGCCACAACAGCGAATCTTACTTCCTCGACATTGCAGTTAAA
* * * * ** * **
63175217 AAGATTAAAGCTACCACAGCAAATCTTACTT-CTCAAGCGGTGTAGTGGAA
1 AAGATTAAAGCCACAACAGCGAATCTTACTTCCTCGA-CATTGCAGTTAAA
* * * * *
63175267 CAGATTAACGCCATAACAGCGAACCTTTCTTCC-CTGACATTGCAGTTAAA
1 AAGATTAAAGCCACAACAGCGAATCTTACTTCCTC-GACATTGCAGTTAAA
* * * ** ** *
63175317 AAGATTAAAGCTACCACAGCGAATCTTACTT-CTCAAGCGGTGCAGTGGAG
1 AAGATTAAAGCCACAACAGCGAATCTTACTTCCTCGA-CATTGCAGTTAAA
* * * * * *
63175367 CAGATTAACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAA
1 AAGATTAAAGCCACAACAGCGAATCTTACTTCCTCGACATTGCAGTTAAA
* ** * ** **
63175417 AAGATTAAAGCTACAACAATGAATCTTACTTCC-CTGGCGGTGCAGTGGAA
1 AAGATTAAAGCCACAACAGCGAATCTTACTTCCTC-GACATTGCAGTTAAA
* * * * * * * *
63175467 CAGATTAACGCCACAACTGTGAATCTTGCTTCCCCAACATGGCAGTTAAA
1 AAGATTAAAGCCACAACAGCGAATCTTACTTCCTCGACATTGCAGTTAAA
* * * * * * * **
63175517 AAGATTAAAGCTACAACAGTGAATCTTACTCCCTAGGCAGTGTAGTGGAA
1 AAGATTAAAGCCACAACAGCGAATCTTACTTCCTCGACATTGCAGTTAAA
* * * * * * **
63175567 CAGATTGAAGCTACAATAACGAATCTTGCTTCCTCGACATCACAGTTAAA
1 AAGATTAAAGCCACAACAGCGAATCTTACTTCCTCGACATTGCAGTTAAA
*
63175617 CAGATTAAAG
1 AAGATTAAAG
63175627 TAACGGGTAA
Statistics
Matches: 437, Mismatches: 153, Indels: 40
0.69 0.24 0.06
Matches are distributed among these distances:
47 1 0.00
48 2 0.00
49 11 0.03
50 410 0.94
51 10 0.02
52 2 0.00
53 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (50 bp):
AAGATTAAAGCCACAACAGCGAATCTTACTTCCTCGACATTGCAGTTAAA
Found at i:63175123 original size:100 final size:100
Alignment explanation
Indices: 63174956--63175626 Score: 833
Period size: 100 Copynumber: 6.7 Consensus size: 100
63174946 TCCCTGGCAA
* * * * * * * * *
63174956 TGCAATGGAACAAGATGAAAGCCACAACAGTGAATCTTGCTTCCTCGACATTGCCGTTAAAATGA
1 TGCAGTGGAAC-AGATTAACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAAAAGA
* * *
63175021 TTAAAGCCACAACAGTGAATCTTACTTGTCAAGTGG
65 TTAAAGCTACAACAGTGAATCTTACTTCTCAAGCGG
* * * * *
63175057 TGCAGTGGAATAGATTAACACCACAACGGCGAACCTTGCTTCCCTGACATTGTAGTGAAAAAGAT
1 TGCAGTGGAACAGATTAACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
*
63175122 TAAAGCTACCACAGTGAATCTTACTTCTCAAGCGG
66 TAAAGCTACAACAGTGAATCTTACTTCTCAAGCGG
*
63175157 TGCAGTGGAAAAGATTAACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
1 TGCAGTGGAACAGATTAACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
* **
63175222 TAAAGCTACCACAGCAAATCTTACTTCTCAAGCGG
66 TAAAGCTACAACAGTGAATCTTACTTCTCAAGCGG
* * * * *
63175257 TGTAGTGGAACAGATTAACGCCATAACAGCGAACCTTTCTTCCCTGACATTGCAGTTAAAAAGAT
1 TGCAGTGGAACAGATTAACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
* *
63175322 TAAAGCTACCACAGCGAATCTTACTTCTCAAGCGG
66 TAAAGCTACAACAGTGAATCTTACTTCTCAAGCGG
*
63175357 TGCAGTGGAGCAGATTAACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
1 TGCAGTGGAACAGATTAACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
* * **
63175422 TAAAGCTACAACAATGAATCTTACTTCCCTGGCGG
66 TAAAGCTACAACAGTGAATCTTACTTCTCAAGCGG
* * * * *
63175457 TGCAGTGGAACAGATTAACGCCACAACTGTGAATCTTGCTTCCCCAACATGGCAGTTAAAAAGAT
1 TGCAGTGGAACAGATTAACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
* * *
63175522 TAAAGCTACAACAGTGAATCTTAC-TCCCTAGGCAG
66 TAAAGCTACAACAGTGAATCTTACTTCTC-AAGCGG
* * *** * * ** *
63175557 TGTAGTGGAACAGATTGAA-GCTACAATAACGAATCTTGCTTCCTCGACATCACAGTTAAACAGA
1 TGCAGTGGAACAGATT-AACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAAAAGA
63175621 TTAAAG
65 TTAAAG
63175627 TAACGGGTAA
Statistics
Matches: 504, Mismatches: 64, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
99 4 0.01
100 489 0.97
101 11 0.02
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (100 bp):
TGCAGTGGAACAGATTAACGCCACAACGGCGAACCTTGCTTCCCCGACATTGCAGTTAAAAAGAT
TAAAGCTACAACAGTGAATCTTACTTCTCAAGCGG
Found at i:63183050 original size:26 final size:27
Alignment explanation
Indices: 63182993--63183050 Score: 68
Period size: 25 Copynumber: 2.2 Consensus size: 27
63182983 TCTTATAGCG
* *
63182993 AGTTATTTGGAAAAGCCTATGTGGTGT
1 AGTTATTCGGAAAAGCCTATGTGGTGA
63183020 A-TTATTCGG-AAAGCCT-TAGTGGTGA
1 AGTTATTCGGAAAAGCCTAT-GTGGTGA
63183045 AGTTAT
1 AGTTAT
63183051 CTGGGAAGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 1 0.04
25 14 0.52
26 11 0.41
27 1 0.04
ACGTcount: A:0.28, C:0.09, G:0.28, T:0.36
Consensus pattern (27 bp):
AGTTATTCGGAAAAGCCTATGTGGTGA
Found at i:63186376 original size:42 final size:43
Alignment explanation
Indices: 63186308--63186393 Score: 147
Period size: 42 Copynumber: 2.0 Consensus size: 43
63186298 TTATGTTTCG
*
63186308 GAACCACATGGGCAGAGGACATGGGCATGTGTCGAGGCCGTGT
1 GAACCACATGGGCAGAGGACATGGGCATGTGTCCAGGCCGTGT
*
63186351 GAACCACATGGGTA-AGGACATGGGCATGTGTCCAGGCCGTGT
1 GAACCACATGGGCAGAGGACATGGGCATGTGTCCAGGCCGTGT
63186393 G
1 G
63186394 GCAAATAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 28 0.68
43 13 0.32
ACGTcount: A:0.23, C:0.21, G:0.38, T:0.17
Consensus pattern (43 bp):
GAACCACATGGGCAGAGGACATGGGCATGTGTCCAGGCCGTGT
Found at i:63205692 original size:9 final size:9
Alignment explanation
Indices: 63205678--63205711 Score: 68
Period size: 9 Copynumber: 3.8 Consensus size: 9
63205668 AAATGGGGTG
63205678 AGCTTAGCA
1 AGCTTAGCA
63205687 AGCTTAGCA
1 AGCTTAGCA
63205696 AGCTTAGCA
1 AGCTTAGCA
63205705 AGCTTAG
1 AGCTTAG
63205712 TGTGAGTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.24
Consensus pattern (9 bp):
AGCTTAGCA
Found at i:63209044 original size:9 final size:9
Alignment explanation
Indices: 63209030--63209054 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
63209020 CACTTAAGAG
63209030 CTAAAATTC
1 CTAAAATTC
63209039 CTAAAATTC
1 CTAAAATTC
63209048 CTAAAAT
1 CTAAAAT
63209055 ACACCAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (9 bp):
CTAAAATTC
Found at i:63211787 original size:46 final size:43
Alignment explanation
Indices: 63211723--63211811 Score: 99
Period size: 44 Copynumber: 2.0 Consensus size: 43
63211713 ATAGGGCTGT
**
63211723 AATGGAATAGAGCGGTAATTAGTAATTCAATTGT-TTGGTTAAATGA
1 AATGGAATAGAAAGGTAA-TAGT-ATTC--TTGTCTTGGTTAAATGA
*
63211769 AATGGAATAGAAATGTAATAGTATTCTTGTGCTTGGTTAAATG
1 AATGGAATAGAAAGGTAATAGTATTCTTGT-CTTGGTTAAATG
63211812 GAATATATGT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
42 4 0.11
44 15 0.39
45 4 0.11
46 15 0.39
ACGTcount: A:0.36, C:0.04, G:0.24, T:0.36
Consensus pattern (43 bp):
AATGGAATAGAAAGGTAATAGTATTCTTGTCTTGGTTAAATGA
Found at i:63224932 original size:44 final size:43
Alignment explanation
Indices: 63224826--63225238 Score: 268
Period size: 44 Copynumber: 9.8 Consensus size: 43
63224816 CCATCATTTT
* * ** * * *
63224826 AATCCGCTCCACTGTAACTTCAAAGAGATAGGATTAGTTTTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTATTC
*
63224869 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTGGTTCATTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTT-ATTC
* * * * *
63224913 AATCTGCACTACTGCAACTTTAGAGAGATAAGACTT-G--ATGC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGGTTATTC
* * ** *
63224954 GATCTGCT-CTCTGCAACTT-A---AGATCTG--TGATT-TTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTATTC
* * * * *
63224989 -ATCCGCTCCACTGCAACTTCAGAGAGATAGGATTAGTTTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GGTTATTC
* * *
63225032 AATCTGCTCCACTACAATTTCAGGGAGATAAGATTGATTTATTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTG-GTTATTC
* * * *
63225076 AGTCTGCTCCACTGCAACTTCAGGCAGATAAGACTGG--ATGC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTATTC
* * *
63225117 GATCTGCT-CTCTGCAACTTCAGAGAGATAAGACTTGTGATT-TT-
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-G-TTATTC
* * * *
63225160 AACCCGCTCCACTGCAACTTCAGGGAGATAGGATT-ATTGACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTT-A-TTC
* *
63225204 AATCAGCTCCACTGCAACTTTAGGGAGATAAGATT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
63225239 CGTCATCTTT
Statistics
Matches: 288, Mismatches: 56, Indels: 51
0.73 0.14 0.13
Matches are distributed among these distances:
33 1 0.00
34 6 0.02
35 12 0.04
36 6 0.02
39 6 0.02
40 32 0.11
41 21 0.07
42 4 0.01
43 47 0.16
44 151 0.52
45 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTTATTC
Found at i:63225095 original size:163 final size:167
Alignment explanation
Indices: 63224821--63225238 Score: 555
Period size: 163 Copynumber: 2.5 Consensus size: 167
63224811 AAGATCCATC
* * *
63224821 ATTTTAATCCGCTCCACTGTAACTTCAAAGAGATAGGATTAGTTT-TTCAATCTGCTCCACTGTA
1 ATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTAGTTTCTTCAATCTGCTCCACTGCA
* * * * *
63224885 ACTTCAGGGAGATAAGATTGGTTCATTCAATCTGCACTACTGCAACTTTAGAG-AGATAAGACTT
66 ATTTCAGGGAGATAAGATTGATTCATTCAATCTGCACCACTGCAACTTCAG-GCAGATAAGACTG
63224949 GATGCGATCTGCTCTCTGCAACTT-A-AGAT-C-TGTG
130 GATGCGATCTGCTCTCTGCAACTTAAGAGATACTTGTG
* *
63224983 ATTTTCATCCGCTCCACTGCAACTTCAGAGAGATAGGATTAGTTTCTTCAATCTGCTCCACTACA
1 ATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTAGTTTCTTCAATCTGCTCCACTGCA
* * *
63225048 ATTTCAGGGAGATAAGATTGATTTATTCAGTCTGCTCCACTGCAACTTCAGGCAGATAAGACTGG
66 ATTTCAGGGAGATAAGATTGATTCATTCAATCTGCACCACTGCAACTTCAGGCAGATAAGACTGG
63225113 ATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGACTTGTG
131 ATGCGATCTGCTCTCTGCAACTT-A-AGAGAT---ACTTGTG
* * * *
63225155 ATTTTAACCCGCTCCACTGCAACTTCAGGGAGATAGGATTA-TTGACTTCAATCAGCTCCACTGC
1 ATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTAGTT-TCTTCAATCTGCTCCACTGC
63225219 AACTTT-AGGGAGATAAGATT
65 AA-TTTCAGGGAGATAAGATT
63225239 CGTCATCTTT
Statistics
Matches: 224, Mismatches: 19, Indels: 16
0.86 0.07 0.06
Matches are distributed among these distances:
162 43 0.19
163 95 0.42
166 1 0.00
167 4 0.02
171 3 0.01
172 75 0.33
173 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (167 bp):
ATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTAGTTTCTTCAATCTGCTCCACTGCA
ATTTCAGGGAGATAAGATTGATTCATTCAATCTGCACCACTGCAACTTCAGGCAGATAAGACTGG
ATGCGATCTGCTCTCTGCAACTTAAGAGATACTTGTG
Found at i:63225233 original size:128 final size:128
Alignment explanation
Indices: 63224999--63225236 Score: 313
Period size: 128 Copynumber: 1.9 Consensus size: 128
63224989 ATCCGCTCCA
* * * *
63224999 CTGCAACTTCAGAGAGATAGGATTAGTTTCTTCAATCTGCTCCACTACAATTTCAGGGAGATAAG
1 CTGCAACTTCAGAGAGATAAGATTAGTTTCTTCAACCCGCTCCACTACAACTTCAGGGAGATAAG
* * *
63225064 ATTGATTTATTCAGTCTGCTCCACTGCAACTTCAGGCAGATAAGACTGGATGCGATCTGCTCT
66 ATTGATTGATTCAATCAGCTCCACTGCAACTTCAGGCAGATAAGACTGGATGCGATCTGCTCT
*
63225127 CTGCAACTTCAGAGAGATAAGACTT-GTGATT-TT-AACCCGCTCCACTGCAACTTCAGGGAGAT
1 CTGCAACTTCAGAGAGATAAGA-TTAGT--TTCTTCAACCCGCTCCACTACAACTTCAGGGAGAT
* * *
63225189 AGGATT-ATTGACTTCAATCAGCTCCACTGCAACTTTAGGGAGATAAGA
63 AAGATTGATTGA-TTCAATCAGCTCCACTGCAACTTCAGGCAGATAAGA
63225237 TTCGTCATCT
Statistics
Matches: 95, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
127 4 0.04
128 85 0.89
129 4 0.04
130 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (128 bp):
CTGCAACTTCAGAGAGATAAGATTAGTTTCTTCAACCCGCTCCACTACAACTTCAGGGAGATAAG
ATTGATTGATTCAATCAGCTCCACTGCAACTTCAGGCAGATAAGACTGGATGCGATCTGCTCT
Found at i:63225331 original size:51 final size:51
Alignment explanation
Indices: 63225267--63225399 Score: 149
Period size: 51 Copynumber: 2.6 Consensus size: 51
63225257 CCAGAGAGAT
* *
63225267 AAGATTCGCTACCTTCAGCTTTAATCTGCTCCACTGCAACGCCAGGGAAAC
1 AAGATTCGCTACCTTCAGCTTTAATCTACTCCACTGCAACGCCAAGGAAAC
** * * * *
63225318 AAGATTCGCTACCTTTTGCTTTAATCTATTCCACTGTAACGCCAAGGAGAT
1 AAGATTCGCTACCTTCAGCTTTAATCTACTCCACTGCAACGCCAAGGAAAC
* * * * *
63225369 AGGATTGGTTGCCTTCAGCTTTAATCCACTC
1 AAGATTCGCTACCTTCAGCTTTAATCTACTC
63225400 TATTTCAGCT
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (51 bp):
AAGATTCGCTACCTTCAGCTTTAATCTACTCCACTGCAACGCCAAGGAAAC
Found at i:63225482 original size:51 final size:51
Alignment explanation
Indices: 63225406--63225504 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 51
63225396 ACTCTATTTC
*
63225406 AGCTTTAATCTATTCCACTGCAACGCCAGAGAAATAAGATTCGCTACCTTT
1 AGCTTTAATCTATTCCACTGCAACGCCAGAGAAATAAGATTCACTACCTTT
* * * *
63225457 AGCTTTAATCTGTTCCATTGCAACGCTAGGGAAATAAGATTCACTACC
1 AGCTTTAATCTATTCCACTGCAACGCCAGAGAAATAAGATTCACTACC
63225505 CTCAGTCTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (51 bp):
AGCTTTAATCTATTCCACTGCAACGCCAGAGAAATAAGATTCACTACCTTT
Found at i:63225516 original size:123 final size:123
Alignment explanation
Indices: 63225280--63225509 Score: 307
Period size: 123 Copynumber: 1.9 Consensus size: 123
63225270 ATTCGCTACC
* * *
63225280 TTCAGCTTTAATCTGCTCCACTGCAACGCCAGGGAAACAAGATTCGCTACCTTTTGCTTTAATCT
1 TTCAGCTTTAATCTACTCCACTGCAACGCCAGAGAAACAAGATTCGCTACCTTTAGCTTTAATCT
* * * *** * *
63225345 ATTCCACTGTAACGCCAAGGAGATAGGATTGGTTGCCTTCAGCTTTAATCCACTCTAT
66 ATTCCACTGCAACGCCAAGGAAATAAGATTCACTACCCTCAGCTTTAATCCACTCTAT
* *
63225403 TTCAGCTTTAATCTATTCCACTGCAACGCCAGAGAAATAAGATTCGCTACCTTTAGCTTTAATCT
1 TTCAGCTTTAATCTACTCCACTGCAACGCCAGAGAAACAAGATTCGCTACCTTTAGCTTTAATCT
* * * *
63225468 GTTCCATTGCAACGCTAGGGAAATAAGATTCACTACCCTCAG
66 ATTCCACTGCAACGCCAAGGAAATAAGATTCACTACCCTCAG
63225510 TCTTAATGCC
Statistics
Matches: 90, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
123 90 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (123 bp):
TTCAGCTTTAATCTACTCCACTGCAACGCCAGAGAAACAAGATTCGCTACCTTTAGCTTTAATCT
ATTCCACTGCAACGCCAAGGAAATAAGATTCACTACCCTCAGCTTTAATCCACTCTAT
Found at i:63226203 original size:26 final size:26
Alignment explanation
Indices: 63226170--63226221 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
63226160 AAAATTCGAA
63226170 GGGATAGTCTAAATTTAGACTTTTTC
1 GGGATAGTCTAAATTTAGACTTTTTC
63226196 GGGATAGTCTAAATTTAGACTTTTTC
1 GGGATAGTCTAAATTTAGACTTTTTC
63226222 TTAGATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (26 bp):
GGGATAGTCTAAATTTAGACTTTTTC
Found at i:63229916 original size:45 final size:46
Alignment explanation
Indices: 63229849--63229972 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
63229839 CATATGACCT
*
63229849 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
63229892 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
63229938 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
63229973 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:63229955 original size:46 final size:45
Alignment explanation
Indices: 63229849--63230083 Score: 207
Period size: 37 Copynumber: 5.8 Consensus size: 45
63229839 CATATGACCT
*
63229849 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
63229892 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
63229938 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
63229975 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
63230012 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
63230049 CTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
63230084 CACTTATCAC
Statistics
Matches: 177, Mismatches: 7, Indels: 18
0.88 0.03 0.09
Matches are distributed among these distances:
37 101 0.57
39 2 0.01
40 3 0.02
42 1 0.01
43 9 0.05
44 6 0.03
45 21 0.12
46 34 0.19
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:63229976 original size:37 final size:37
Alignment explanation
Indices: 63229934--63230110 Score: 300
Period size: 37 Copynumber: 4.8 Consensus size: 37
63229924 AGCTGAAGCT
* **
63229934 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* *
63229971 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
63230008 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
63230045 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
*
63230082 GCCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTTTCTTGATCAGA
63230111 AGTACTCAAA
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:63235254 original size:40 final size:40
Alignment explanation
Indices: 63234977--63235240 Score: 349
Period size: 40 Copynumber: 6.6 Consensus size: 40
63234967 CGAATGATGT
* * * *
63234977 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
63235017 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
63235057 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
63235095 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
63235136 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
63235176 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
63235216 CCGGGCTATGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
63235241 AACGAGTAGC
Statistics
Matches: 201, Mismatches: 16, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
39 33 0.16
40 158 0.79
41 10 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:63235271 original size:159 final size:159
Alignment explanation
Indices: 63234977--63235273 Score: 379
Period size: 159 Copynumber: 1.9 Consensus size: 159
63234967 CGAATGATGT
*
63234977 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTG
* * ** *
63235042 TGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGAGTTAAGT
66 TGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAATCCGAGTTAAAT
63235107 CCCGAAGGCATTTGTGCGAGTTACTATAA
131 CCCGAAGGCATTTGTGCGAGTTACTATAA
* * * *
63235136 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATT
* * * *
63235199 TGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGCTATATCCG-GT
64 TGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-CTAAATCCGAGT
*
63235261 TAAATTCCGAAGG
126 TAAATCCCGAAGG
63235274 TACGTGATTT
Statistics
Matches: 118, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
158 3 0.03
159 84 0.71
160 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (159 bp):
CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTG
TGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAATCCGAGTTAAAT
CCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:63244431 original size:3 final size:3
Alignment explanation
Indices: 63244425--63244474 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
63244415 ATAATAATAA
63244425 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
63244473 TA
1 TA
63244475 ATAAGAGTAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:63246380 original size:15 final size:15
Alignment explanation
Indices: 63246345--63246405 Score: 77
Period size: 15 Copynumber: 3.9 Consensus size: 15
63246335 AGTGTTTGAG
63246345 ATTTTTATTTATTTATT
1 ATTTTTA-TT-TTTATT
* *
63246362 ATTTTTATGTTTATA
1 ATTTTTATTTTTATT
63246377 ATTTTTATTTTTATT
1 ATTTTTATTTTTATT
63246392 ATATTTTATTTTTA
1 AT-TTTTATTTTTA
63246406 ATAAAGATAC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
15 20 0.51
16 12 0.31
17 7 0.18
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (15 bp):
ATTTTTATTTTTATT
Found at i:63253802 original size:41 final size:41
Alignment explanation
Indices: 63253733--63253905 Score: 168
Period size: 41 Copynumber: 4.2 Consensus size: 41
63253723 CACTTATGTA
* ** * * *
63253733 CCCCAGTTTGTACTTCTATACACTTAAATTGAATTTACATG
1 CCCCTGTTTGTACTTCGGTACACCTAAATTGCACTTACATG
* * **
63253774 CCCCTGTTTCTACTTCGGTACTCCTAAATTGCACTTATGTG
1 CCCCTGTTTGTACTTCGGTACACCTAAATTGCACTTACATG
* * * *
63253815 CCCCTTTTTGTACCTCAGTACCCCTAAATTGCACTTACATG
1 CCCCTGTTTGTACTTCGGTACACCTAAATTGCACTTACATG
* * * *
63253856 CTCCAGTTTGTACTTTGGTACACC-ACAATTGCACTTACGTG
1 CCCCTGTTTGTACTTCGGTACACCTA-AATTGCACTTACATG
63253897 CCCCTGTTT
1 CCCCTGTTT
63253906 ACACTCTGGT
Statistics
Matches: 104, Mismatches: 27, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
40 1 0.01
41 103 0.99
ACGTcount: A:0.21, C:0.29, G:0.13, T:0.37
Consensus pattern (41 bp):
CCCCTGTTTGTACTTCGGTACACCTAAATTGCACTTACATG
Found at i:63253809 original size:82 final size:82
Alignment explanation
Indices: 63253718--63253892 Score: 192
Period size: 82 Copynumber: 2.1 Consensus size: 82
63253708 GGTACCCTTG
* * * * *
63253718 AATTACACTTATGTACCCCAGTTTGTACTTCTA-TACACTTAAATTGAATTTACATGCCCCTGTT
1 AATTGCACTTATGTACCCCAGTTTGTACCTC-AGTACACCTAAATTGAACTTACATGCCCCAGTT
*
63253782 TCTACTTCGGTACTCCTA-
65 TCTACTTCGGTACACC-AC
* ** * * *
63253800 AATTGCACTTATGTGCCCCTTTTTGTACCTCAGTACCCCTAAATTGCACTTACATGCTCCAGTTT
1 AATTGCACTTATGTACCCCAGTTTGTACCTCAGTACACCTAAATTGAACTTACATGCCCCAGTTT
* *
63253865 GTACTTTGGTACACCAC
66 CTACTTCGGTACACCAC
63253882 AATTGCACTTA
1 AATTGCACTTA
63253893 CGTGCCCCTG
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
81 2 0.03
82 75 0.97
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.37
Consensus pattern (82 bp):
AATTGCACTTATGTACCCCAGTTTGTACCTCAGTACACCTAAATTGAACTTACATGCCCCAGTTT
CTACTTCGGTACACCAC
Found at i:63263246 original size:41 final size:41
Alignment explanation
Indices: 63263194--63263335 Score: 180
Period size: 41 Copynumber: 3.5 Consensus size: 41
63263184 GTTAATTATA
* *
63263194 CCTGAATTGCACTTACGTGCAC-CTGTTCGTACTTCAATACC
1 CCTGAATTGCACTTATGTGC-CGCTGTTTGTACTTCAATACC
* **
63263235 CCTGAATTGCACTTATGTGCCTCTGTTTGTACTT-TGTAACC
1 CCTGAATTGCACTTATGTGCCGCTGTTTGTACTTCAAT-ACC
* *
63263276 CCTGAATTGCACTAATGTGCCGCTGTTTGTACTTCGATACC
1 CCTGAATTGCACTTATGTGCCGCTGTTTGTACTTCAATACC
*
63263317 CCTGAATTGCACATATGTG
1 CCTGAATTGCACTTATGTG
63263336 TCCCTTTTTA
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
40 2 0.02
41 85 0.97
42 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (41 bp):
CCTGAATTGCACTTATGTGCCGCTGTTTGTACTTCAATACC
Found at i:63265630 original size:41 final size:41
Alignment explanation
Indices: 63265573--63265654 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
63265563 AAAAGAAAGA
*
63265573 GATTTTACAATGCATAGAATGTTTTAACCGATTATTTAAGT
1 GATTTTACAACGCATAGAATGTTTTAACCGATTATTTAAGT
63265614 GATTTTACAACGCATAGAATGTTTTAACCGATTATTTAAGT
1 GATTTTACAACGCATAGAATGTTTTAACCGATTATTTAAGT
63265655 AACACCCTTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (41 bp):
GATTTTACAACGCATAGAATGTTTTAACCGATTATTTAAGT
Found at i:63266894 original size:32 final size:32
Alignment explanation
Indices: 63266858--63267388 Score: 643
Period size: 32 Copynumber: 16.6 Consensus size: 32
63266848 CAATATATAA
* *
63266858 ATACATATACCAA-TCAATTCGGCAACATAAAT
1 ATACATATA-CAATTCAATTCGGCAATATAAGT
63266890 ATACATATACAATTCAATTCGGCAATATAAGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
* * * ***
63266922 ATATATATACAATTCAATTTGACAATAGGTGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
*
63266954 ATACCTATACAATTCAATTCGGCAATATAAGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
*
63266986 ATAC-TATTACAATTCAATTCGACAATATAAGT
1 ATACATA-TACAATTCAATTCGGCAATATAAGT
** ***
63267018 ATACATATACAATTCAATTCGAAAATAGGTGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
* * * *
63267050 ATACCTATACAATTTAATTCAGAAATATAAGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
*
63267082 ATACATATACAATTCAATTCGACAATATAAGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
63267114 ATACATATACAATTCAATTCGGCAATATAAGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
* ***
63267146 ATACATATACAATTCAATTCGACAATAGGTGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
*
63267178 ATACCTATACAATTCAATTCGGCAATATAAGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
* * ***
63267210 ATACATATACAATTCAATTTGACAATAGGTGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
* ** ***
63267242 ATACTTATACAATTCAATTCAACAATAGGTGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
*
63267274 ATACCTATACAATTCAATTCGGCAATATAAGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
*
63267306 ATACACATACAATTCAATTCGGCAATATAAGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
* ***
63267338 ATACATATACAATTCAATTCGACAATAGGTGT
1 ATACATATACAATTCAATTCGGCAATATAAGT
*
63267370 ATACCTATACAATTCAATT
1 ATACATATACAATTCAATT
63267389 AGAGAATACA
Statistics
Matches: 431, Mismatches: 65, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
31 5 0.01
32 424 0.98
33 2 0.00
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (32 bp):
ATACATATACAATTCAATTCGGCAATATAAGT
Found at i:63268775 original size:28 final size:27
Alignment explanation
Indices: 63268736--63268790 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 27
63268726 AATGTTGGGA
63268736 ATTTTTTTGTACATCTTGGGAACCGAT
1 ATTTTTTTGTACATCTTGGGAACCGAT
*
63268763 ATTTTTCTTGTACATCTTGGGCACCGAT
1 ATTTTT-TTGTACATCTTGGGAACCGAT
63268791 GCAAAAGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.44
Consensus pattern (27 bp):
ATTTTTTTGTACATCTTGGGAACCGAT
Found at i:63270236 original size:29 final size:30
Alignment explanation
Indices: 63270204--63270265 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
63270194 ATTTATAAAT
63270204 AATTAATA-TTAAT-TACTTAAAATATTTAA
1 AATTAATATTTAATATA-TTAAAATATTTAA
*
63270233 AATTAATATTTCATATATTAAAATATTTAA
1 AATTAATATTTAATATATTAAAATATTTAA
63270263 AAT
1 AAT
63270266 AATCTATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 8 0.27
30 20 0.67
31 2 0.07
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (30 bp):
AATTAATATTTAATATATTAAAATATTTAA
Found at i:63271870 original size:25 final size:25
Alignment explanation
Indices: 63271816--63271871 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 25
63271806 GTTTTATTTG
*
63271816 GGAAGATAAATTCTAGATTAGAGTA
1 GGAATATAAATTCTAGATTAGAGTA
63271841 GGAATATAAATTCTAGATTAGAGTA
1 GGAATATAAATTCTAGATTAGAGTA
63271866 GGAATA
1 GGAATA
63271872 GTAGTGGCAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.45, C:0.04, G:0.23, T:0.29
Consensus pattern (25 bp):
GGAATATAAATTCTAGATTAGAGTA
Found at i:63272823 original size:16 final size:16
Alignment explanation
Indices: 63272802--63272844 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 16
63272792 TGATAAAATG
63272802 TTTGTGTTGGTCATTA
1 TTTGTGTTGGTCATTA
* *
63272818 TTTGTGCT-G-AATTA
1 TTTGTGTTGGTCATTA
63272832 TTTGTGTTGGTCA
1 TTTGTGTTGGTCA
63272845 AATAATGAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 4
0.72 0.14 0.14
Matches are distributed among these distances:
14 11 0.52
15 2 0.10
16 8 0.38
ACGTcount: A:0.14, C:0.07, G:0.26, T:0.53
Consensus pattern (16 bp):
TTTGTGTTGGTCATTA
Found at i:63274320 original size:19 final size:20
Alignment explanation
Indices: 63274296--63274335 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
63274286 ATTGATATTA
63274296 ATATTAA-A-TAAAAATAATT
1 ATATTAATATTAAAAA-AATT
63274315 ATATTAATATTAAAAAAATT
1 ATATTAATATTAAAAAAATT
63274335 A
1 A
63274336 AAAAAAACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 6 0.32
21 6 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
ATATTAATATTAAAAAAATT
Found at i:63274322 original size:25 final size:25
Alignment explanation
Indices: 63274285--63274332 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
63274275 ATAAATTTAA
63274285 AATTGATATTAATATTAAATAAAAAT
1 AATTGATATTAATATTAAA-AAAAAT
63274311 AATT-ATATTAATATTAAAAAAA
1 AATTGATATTAATATTAAAAAAA
63274333 TTAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 4 0.18
25 14 0.64
26 4 0.18
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (25 bp):
AATTGATATTAATATTAAAAAAAAT
Found at i:63274770 original size:4 final size:4
Alignment explanation
Indices: 63274755--63274809 Score: 101
Period size: 4 Copynumber: 13.8 Consensus size: 4
63274745 CTAAACAATA
*
63274755 TATG TGTG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
63274803 TATG TAT
1 TATG TAT
63274810 TTATTGTTTG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:63276136 original size:4 final size:4
Alignment explanation
Indices: 63276121--63276175 Score: 101
Period size: 4 Copynumber: 13.8 Consensus size: 4
63276111 CTAAACAATA
*
63276121 TATG TGTG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
63276169 TATG TAT
1 TATG TAT
63276176 TTATTGTTTG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:63277502 original size:30 final size:31
Alignment explanation
Indices: 63277458--63277517 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
63277448 GAATTGGATC
63277458 AAATCAAAATTTCATGTATAAAATTGCACAA
1 AAATCAAAATTTCATGTATAAAATTGCACAA
* *
63277489 AAATCAAAA-TTCATTTATACAATTGCACA
1 AAATCAAAATTTCATGTATAAAATTGCACA
63277518 TTAAACCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 18 0.67
31 9 0.33
ACGTcount: A:0.50, C:0.15, G:0.05, T:0.30
Consensus pattern (31 bp):
AAATCAAAATTTCATGTATAAAATTGCACAA
Found at i:63279247 original size:279 final size:272
Alignment explanation
Indices: 63278674--63279491 Score: 1186
Period size: 279 Copynumber: 3.0 Consensus size: 272
63278664 AGCTCAAATG
* *
63278674 ATAAATAATTCTTCCTAAAGAGACCAAAATGAAGCTTTAAGTTTTCAAGTAATTGTAGCTGCAAA
1 ATAAATAATTCTTCCTAAAGAGACCAAAATGAAACTTTAAGTTTTCAAGTAATTGTAGCTACAAA
* *
63278739 TTAAGTTTGAGGTTTTCATTAAAAATAATTTTAGTGGGTACGTTTATAAGAGAATATAACTTGAT
66 TTAAGTTTGAGGTTTTCATTAAAAATAATTTCAGTGGGTACGTTTATAAGAGAATTTAACTTGAT
*
63278804 ATTTTGACATGTTTGAAATGTTTTTTTTTAAACGAGAAAATAAAGTTTTAACCTGCTGGAATTGG
131 ATTTTGACATGTTTGAAATGTTTTTTTTTAAACGAGACAATAAAGTTTTAACCTGCTGGAATTGG
* * *
63278869 TTCTTCAAAACACTAGTACTTTCTTTTATCTAGTGATGTAACCTCCGTAATCCGACCGTAACATC
196 TTCTTCAAAACACTAGTACTTTCTTTTATCTAGTGATGTGACCTCCATAATCCGACTGTAACATC
*
63278934 TAGGCTAGGTTT
261 TAGGCCAGGTTT
* * *
63278946 ATAAATAATCCTTCCTAAAGAGACCAAAATAAAACTTTAAGTTTTCAAGTAATTGTTGCTACAAA
1 ATAAATAATTCTTCCTAAAGAGACCAAAATGAAACTTTAAGTTTTCAAGTAATTGTAGCTACAAA
* * * * ** * *
63279011 TTAAGTTTGAAGTTTTCATTAAAAAAAAATTCAGCGGACACATTTATAAGAGAATTTAGCTTGAT
66 TTAAGTTTGAGGTTTTCATTAAAAATAATTTCAGTGGGTACGTTTATAAGAGAATTTAACTTGAT
* * *
63279076 ATTTTAACATGTTTGAAATGTTTTTTTTTAGAAAAAAAACAAGACAATGAAGTTTTAACCTGCTG
131 ATTTTGACATGTTTGAAATGTTTTTTTTT-------AAACGAGACAATAAAGTTTTAACCTGCTG
* *
63279141 GAATTGATTATTCAAAACACTAGTACTTTCTTTTATCTAGTGATGTGACCTCCATAATCCGACTG
189 GAATTGGTTCTTCAAAACACTAGTACTTTCTTTTATCTAGTGATGTGACCTCCATAATCCGACTG
* *
63279206 TAACGTCTAGGCCGGGTTT
254 TAACATCTAGGCCAGGTTT
* * * * *
63279225 ATAAATATTTTTTCCTAAAGAGACTAAAACGAAACTTTAAGTTTTCAAGTAATTGTCGCTACAAA
1 ATAAATAATTCTTCCTAAAGAGACCAAAATGAAACTTTAAGTTTTCAAGTAATTGTAGCTACAAA
* *
63279290 TTAAGTATGAGGTTTTCATTAAAAATAATTTCAGTGGGTACGTTTATAAGAGAATTTAACTTAAT
66 TTAAGTTTGAGGTTTTCATTAAAAATAATTTCAGTGGGTACGTTTATAAGAGAATTTAACTTGAT
* * *
63279355 ATTTTGACATGTTTGAAGTGTTCTTTTTTTTTAAATGAGACAATAAAGTTTTAACTTGCTGGAAT
131 ATTTTGACATGTTTGAAATG---TTTTTTTTTAAACGAGACAATAAAGTTTTAACCTGCTGGAAT
* * *
63279420 TGGTTCTTCAAAACACTAGTACTTTCTTTTATTTAGTGATGTGACCTCCATAATCTGACTATAAC
193 TGGTTCTTCAAAACACTAGTACTTTCTTTTATCTAGTGATGTGACCTCCATAATCCGACTGTAAC
63279485 ATCTAGG
258 ATCTAGG
63279492 TCGAGTTTGG
Statistics
Matches: 480, Mismatches: 56, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
272 143 0.30
275 95 0.20
279 233 0.49
282 9 0.02
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (272 bp):
ATAAATAATTCTTCCTAAAGAGACCAAAATGAAACTTTAAGTTTTCAAGTAATTGTAGCTACAAA
TTAAGTTTGAGGTTTTCATTAAAAATAATTTCAGTGGGTACGTTTATAAGAGAATTTAACTTGAT
ATTTTGACATGTTTGAAATGTTTTTTTTTAAACGAGACAATAAAGTTTTAACCTGCTGGAATTGG
TTCTTCAAAACACTAGTACTTTCTTTTATCTAGTGATGTGACCTCCATAATCCGACTGTAACATC
TAGGCCAGGTTT
Found at i:63287291 original size:16 final size:16
Alignment explanation
Indices: 63287270--63287303 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
63287260 CTATGCTTAT
*
63287270 TATGTGTGAACATGAG
1 TATGTGTGAACATAAG
63287286 TATGTGTGAACATAAG
1 TATGTGTGAACATAAG
63287302 TA
1 TA
63287304 ATTTGAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (16 bp):
TATGTGTGAACATAAG
Found at i:63288253 original size:27 final size:27
Alignment explanation
Indices: 63288220--63288672 Score: 771
Period size: 27 Copynumber: 16.6 Consensus size: 27
63288210 TAAATTGTGC
*
63288220 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63288247 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63288274 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63288301 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63288328 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63288355 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
63288383 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
63288411 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63288438 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
63288465 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
63288493 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
63288521 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
63288549 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
63288577 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* * *
63288604 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* * *
63288631 AGCACTAATTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
**
63288658 AGCACGGAGTGTGCG
1 AGCACTAAGTGTGCG
63288673 GACTCAATAT
Statistics
Matches: 413, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
27 247 0.60
28 166 0.40
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:63288445 original size:110 final size:109
Alignment explanation
Indices: 63288220--63288672 Score: 784
Period size: 110 Copynumber: 4.1 Consensus size: 109
63288210 TAAATTGTGC
*
63288220 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTG
63288285 TGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
66 TGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
63288328 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGT
63288393 GTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
65 GTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
63288438 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGT
63288503 GTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
65 GTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
63288549 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
* * * * *
63288614 GTGCGA-TTTGATTACGTAGCACTAATTGTGCGAGTTGATTATAT
65 GTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
**
63288658 AGCACGGAGTGTGCG
1 AGCACTAAGTGTGCG
63288673 GACTCAATAT
Statistics
Matches: 333, Mismatches: 8, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
108 43 0.13
109 48 0.14
110 162 0.49
111 53 0.16
112 27 0.08
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.31
Consensus pattern (109 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTG
TGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:63296572 original size:28 final size:28
Alignment explanation
Indices: 63296515--63296832 Score: 529
Period size: 28 Copynumber: 11.5 Consensus size: 28
63296505 TAAATTGTGC
*
63296515 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
63296542 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
63296570 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
63296597 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
63296624 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
63296651 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
63296679 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
63296707 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
63296735 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
63296763 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
63296791 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
63296818 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63296833 GACTTAATAT
Statistics
Matches: 283, Mismatches: 6, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
27 119 0.42
28 164 0.58
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:63316033 original size:40 final size:40
Alignment explanation
Indices: 63316002--63316251 Score: 292
Period size: 40 Copynumber: 6.3 Consensus size: 40
63315992 GGACTAAGAT
* *
63316002 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATATCAAA-TCCGGGTTAAGTC
* *
63316042 CCGAAGGCCTTTGTGCGAGATA-CTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATC-AAATCCGGGTTAAGTC
* *
63316082 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* *
63316122 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* * * *
63316162 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* * * * *
63316202 CCGAAGGCATT-GTGTGAGTTA-CTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATATC-AAATCCGGGTTAAGTC
63316241 CCGAAGGCATT
1 CCGAAGGCATT
63316252 TGAACGAGGA
Statistics
Matches: 194, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
39 33 0.17
40 158 0.81
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
Found at i:63316086 original size:80 final size:79
Alignment explanation
Indices: 63315949--63316251 Score: 342
Period size: 80 Copynumber: 3.8 Consensus size: 79
63315939 TTGAATGCTG
* * * * * **
63315949 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * *
63316012 TTGTGCGAGATACAAA
64 TCGTGCGAGTTATAAA
* *
63316028 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
63316093 CGTGCGAGTTATTAAA
65 CGTGCGAGTTA-TAAA
* * *
63316109 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
63316174 GTGCGAGTTGTTAAA
66 GTGCGAGTT-ATAAA
* * * * * *
63316189 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
63316252 TGAACGAGGA
Statistics
Matches: 192, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
79 36 0.19
80 145 0.76
81 11 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTATAAA
Found at i:63316165 original size:120 final size:119
Alignment explanation
Indices: 63315949--63316251 Score: 358
Period size: 120 Copynumber: 2.5 Consensus size: 119
63315939 TTGAATGCTG
* * * * * *
63315949 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
* * *
63316013 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
64 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* *
63316069 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTC
* * * * **
63316134 GTGCGAGTTATTAAA-TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* * * * *
63316189 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATT
63316252 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
119 35 0.22
120 115 0.73
121 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:63325160 original size:40 final size:40
Alignment explanation
Indices: 63325116--63325339 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
63325106 AAGTGAATAT
* * * * **
63325116 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
63325156 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
63325196 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
63325236 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
63325276 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
63325315 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
63325340 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:63325214 original size:80 final size:80
Alignment explanation
Indices: 63325077--63325339 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
63325067 TTGAATGCTG
* * * * *
63325077 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
63325139 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
63325157 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
63325222 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
63325237 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
63325301 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
63325316 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
63325340 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:63325291 original size:120 final size:120
Alignment explanation
Indices: 63325077--63325339 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
63325067 TTGAATGCTG
* * *
63325077 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
63325141 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
63325197 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
63325259 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
63325316 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
63325340 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:63329924 original size:24 final size:26
Alignment explanation
Indices: 63329895--63329948 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
63329885 CCATTTTCTG
63329895 TTTC-TTTG-ATCATCATTTTGATGT
1 TTTCTTTTGTATCATCATTTTGATGT
*
63329919 TTTCTTTTGTTTTCATCATTTTGATGT
1 TTTCTTTTG-TATCATCATTTTGATGT
63329946 TTT
1 TTT
63329949 TAATTGTGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 4 0.15
25 4 0.15
27 18 0.69
ACGTcount: A:0.13, C:0.11, G:0.11, T:0.65
Consensus pattern (26 bp):
TTTCTTTTGTATCATCATTTTGATGT
Found at i:63336904 original size:10 final size:10
Alignment explanation
Indices: 63336889--63337022 Score: 64
Period size: 10 Copynumber: 12.8 Consensus size: 10
63336879 ACCCTTGTTC
63336889 TTTATTTTAT
1 TTTATTTTAT
63336899 TTTATTTTA-
1 TTTATTTTAT
63336908 TTTA-TTTAT
1 TTTATTTTAT
*
63336917 CTAATTATTTATTT
1 -T--TTATTT-TAT
63336931 GTTTATTATTA-
1 -TTTATT-TTAT
63336942 TTTATTATTA-
1 TTTATT-TTAT
63336952 TTT-TTTTAT
1 TTTATTTTAT
*
63336961 ATTATTTTAT
1 TTTATTTTAT
*
63336971 TTTTTATTTAT
1 TTTAT-TTTAT
*
63336982 AATTA-TTTAT
1 -TTTATTTTAT
*
63336992 TGTTATTATAT
1 T-TTATTTTAT
63337003 TGTTATTATTAT
1 T-TTATT-TTAT
*
63337015 TTAATTTT
1 TTTATTTT
63337023 CTTATTATTC
Statistics
Matches: 98, Mismatches: 12, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
8 7 0.07
9 8 0.08
10 42 0.43
11 20 0.20
12 15 0.15
13 3 0.03
14 3 0.03
ACGTcount: A:0.25, C:0.01, G:0.02, T:0.72
Consensus pattern (10 bp):
TTTATTTTAT
Found at i:63336913 original size:4 final size:4
Alignment explanation
Indices: 63336889--63336992 Score: 74
Period size: 4 Copynumber: 25.5 Consensus size: 4
63336879 ACCCTTGTTC
* * *
63336889 TTTA TTTTA TTTTA TTTTA TTTA TTTA TCTA ATTA TTTA TTTG TTTA -TTA
1 TTTA -TTTA -TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
*
63336939 -TTA TTTA -TTA -TTA TTTT TTTA TATTA TTTTA TTT- TTTA TTTA TAATTA
1 TTTA TTTA TTTA TTTA TTTA TTTA T-TTA -TTTA TTTA TTTA TTTA T--TTA
63336987 TTTA TT
1 TTTA TT
63336993 GTTATTATAT
Statistics
Matches: 84, Mismatches: 8, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
3 15 0.18
4 44 0.52
5 20 0.24
6 5 0.06
ACGTcount: A:0.25, C:0.01, G:0.01, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:63336941 original size:3 final size:3
Alignment explanation
Indices: 63336933--63337127 Score: 68
Period size: 3 Copynumber: 66.0 Consensus size: 3
63336923 ATTTATTTGT
*
63336933 TTA TTA TTA TTTA TTA TTA TT- TTT TTA -TA TTA TT- TTA TT- TT-
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
63336974 TTA TTTA TAA TTA TTTA TTG TTA TTA -TA TTG TTA TTA TTA TT- TAA
1 TTA -TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
63337019 TT- TTC TTA TTA TTC TTCG TT- TAA TTA TCA TCA GTTAA TTA TTA TT-
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA -TT-A TTA TTA TTA
* * * * * * * *
63337064 TGTT TTA CTG TTA TTA TTA TTA CTA GTA TGA GTA TTA GTA TTA TTA
1 T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
63337110 GTA TTA TTA TTC TTA TTA
1 TTA TTA TTA TTA TTA TTA
63337128 GGATCCTTGA
Statistics
Matches: 142, Mismatches: 34, Indels: 32
0.68 0.16 0.15
Matches are distributed among these distances:
2 17 0.12
3 109 0.77
4 15 0.11
5 1 0.01
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:63336977 original size:49 final size:47
Alignment explanation
Indices: 63336893--63337028 Score: 132
Period size: 49 Copynumber: 2.8 Consensus size: 47
63336883 TTGTTCTTTA
* * * *
63336893 TTTTATT-TTATTTTATTTAT-TTATCTAATTATTTATTTGTTTATTAT
1 TTTTATTATTATTTT-TTTATATTATTTAATTTTTTATTT-ATAATTAT
*
63336940 TATTTATTATTATTTTTTTATATTATTTTATTTTTTATTTATAATTAT
1 T-TTTATTATTATTTTTTTATATTATTTAATTTTTTATTTATAATTAT
* * *
63336988 TTATTGTTATTATATTGTTATTATTATTTAATTTTCTTATT
1 TT-TTATTATTATTTTTTTA-TATTATTTAATTTT-TTATT
63337029 ATTCTTCGTT
Statistics
Matches: 74, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
47 2 0.03
48 32 0.43
49 35 0.47
50 5 0.07
ACGTcount: A:0.25, C:0.01, G:0.02, T:0.71
Consensus pattern (47 bp):
TTTTATTATTATTTTTTTATATTATTTAATTTTTTATTTATAATTAT
Found at i:63336990 original size:21 final size:22
Alignment explanation
Indices: 63336899--63336992 Score: 81
Period size: 21 Copynumber: 4.3 Consensus size: 22
63336889 TTTATTTTAT
63336899 TTTATTTTATTTATTTATCTAATTA
1 TTTA-TTTATTTATTTA--TAATTA
* *
63336924 TTTATTTGTTTA-TTATTATT-
1 TTTATTTATTTATTTATAATTA
*
63336944 TATTA-TTATTTTTTTAT-ATTA
1 T-TTATTTATTTATTTATAATTA
63336965 TTTTATTT-TTTATTTATAATTA
1 -TTTATTTATTTATTTATAATTA
63336987 TTTATT
1 TTTATT
63336993 GTTATTATAT
Statistics
Matches: 58, Mismatches: 5, Indels: 16
0.73 0.06 0.20
Matches are distributed among these distances:
20 9 0.16
21 28 0.48
22 7 0.12
23 3 0.05
24 7 0.12
25 4 0.07
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.72
Consensus pattern (22 bp):
TTTATTTATTTATTTATAATTA
Found at i:63336995 original size:62 final size:66
Alignment explanation
Indices: 63336889--63337016 Score: 178
Period size: 62 Copynumber: 2.0 Consensus size: 66
63336879 ACCCTTGTTC
*
63336889 TTTATTTTATTTTATTTTATTTATTTATCTAATTATTTATTTGTTTATTAT-TAT-TTATTATTA
1 TTTATATTATTTTATTTTATTTATTTA-CTAATTATTTATTTG-TTATTATAT-TGTTATTATTA
63336952 TTTT
63 TTTT
63336956 TTTATATTATTTTA-TTT-TTTATTTA-TAATTATTTA-TTGTTATTATATTGTTATTATTATTT
1 TTTATATTATTTTATTTTATTTATTTACTAATTATTTATTTGTTATTATATTGTTATTATTATTT
63337017 AATTTTCTTA
Statistics
Matches: 58, Mismatches: 1, Indels: 9
0.85 0.01 0.13
Matches are distributed among these distances:
61 8 0.14
62 16 0.28
63 10 0.17
65 8 0.14
66 3 0.05
67 13 0.22
ACGTcount: A:0.25, C:0.01, G:0.02, T:0.72
Consensus pattern (66 bp):
TTTATATTATTTTATTTTATTTATTTACTAATTATTTATTTGTTATTATATTGTTATTATTATTT
T
Found at i:63337195 original size:39 final size:41
Alignment explanation
Indices: 63337138--63337220 Score: 111
Period size: 39 Copynumber: 2.1 Consensus size: 41
63337128 GGATCCTTGA
63337138 TTTTATTTTTTTTCTTTTAG-T-T-TTATTTTTTATGTTTAT
1 TTTTATTTTTTTTCTTTTAGTTGTGTTA-TTTTTATGTTTAT
*
63337177 TTTTATTTTTATTT-TTTTAGTTGTGTTATTTTTATTTTTAT
1 TTTTATTTTT-TTTCTTTTAGTTGTGTTATTTTTATGTTTAT
63337218 TTT
1 TTT
63337221 CTTAGACTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
39 16 0.41
40 4 0.10
41 16 0.41
42 3 0.08
ACGTcount: A:0.13, C:0.01, G:0.06, T:0.80
Consensus pattern (41 bp):
TTTTATTTTTTTTCTTTTAGTTGTGTTATTTTTATGTTTAT
Found at i:63337206 original size:29 final size:27
Alignment explanation
Indices: 63337152--63337225 Score: 98
Period size: 29 Copynumber: 2.7 Consensus size: 27
63337142 ATTTTTTTTC
*
63337152 TTTTAGTTTTA-TTTTTTA-TGTTTAT
1 TTTTATTTTTATTTTTTTAGTGTTTAT
63337177 TTTTATTTTTATTTTTTTAGTTGTGTTAT
1 TTTTATTTTTATTTTTTTAG-TGT-TTAT
*
63337206 TTTTATTTTTATTTTCTTAG
1 TTTTATTTTTATTTTTTTAG
63337226 ACTTATTTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
25 10 0.23
26 7 0.16
28 3 0.07
29 23 0.53
ACGTcount: A:0.15, C:0.01, G:0.08, T:0.76
Consensus pattern (27 bp):
TTTTATTTTTATTTTTTTAGTGTTTAT
Found at i:63337220 original size:5 final size:6
Alignment explanation
Indices: 63337138--63337220 Score: 67
Period size: 6 Copynumber: 12.5 Consensus size: 6
63337128 GGATCCTTGA
* * *
63337138 TTTTATT TTTTTT CTTTTAG TTTTATT TTTTAT GTTTAT TTTTAT TTTTATTT
1 TTTTA-T TTTTAT -TTTTAT TTTTA-T TTTTAT TTTTAT TTTTAT TTTTA--T
63337191 TTTTAGT TGTGTTAT TTTTAT TTTTAT TTT
1 TTTTA-T T-T-TTAT TTTTAT TTTTAT TTT
63337221 CTTAGACTTA
Statistics
Matches: 63, Mismatches: 7, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
6 35 0.56
7 16 0.25
8 9 0.14
9 3 0.05
ACGTcount: A:0.13, C:0.01, G:0.06, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:63342880 original size:20 final size:20
Alignment explanation
Indices: 63342851--63342908 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
63342841 ATAAACTATG
* *
63342851 TACCACTCCATTTACTTTCT
1 TACCATTCCATTTACTTACT
63342871 TACCATTCCATTTACTTACT
1 TACCATTCCATTTACTTACT
* *
63342891 TTCCATTTCATTTACTTA
1 TACCATTCCATTTACTTA
63342909 AGATAAACTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.22, C:0.29, G:0.00, T:0.48
Consensus pattern (20 bp):
TACCATTCCATTTACTTACT
Found at i:63344035 original size:9 final size:9
Alignment explanation
Indices: 63344021--63344063 Score: 61
Period size: 9 Copynumber: 4.9 Consensus size: 9
63344011 AATTAATAAT
63344021 TTCATTAAA
1 TTCATTAAA
63344030 TTCATTAAA
1 TTCATTAAA
* *
63344039 TT-AATAAT
1 TTCATTAAA
63344047 TTCATTAAA
1 TTCATTAAA
63344056 TTCATTAA
1 TTCATTAA
63344064 TTTAGACAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
8 6 0.21
9 23 0.79
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (9 bp):
TTCATTAAA
Found at i:63344039 original size:26 final size:26
Alignment explanation
Indices: 63344010--63344063 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
63344000 TTCTTAATCC
63344010 AAATTAATAATTTCATTAAATTCATT
1 AAATTAATAATTTCATTAAATTCATT
63344036 AAATTAATAATTTCATTAAATTCATT
1 AAATTAATAATTTCATTAAATTCATT
63344062 AA
1 AA
63344064 TTTAGACAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (26 bp):
AAATTAATAATTTCATTAAATTCATT
Done.