Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 203 of 203
Found at i:65121933 original size:13 final size:13
Alignment explanation
Indices: 65121915--65121942 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
65121905 GTATCATCTT
65121915 TAAATTTTTACTC
1 TAAATTTTTACTC
65121928 TAAATTTTTACTC
1 TAAATTTTTACTC
65121941 TA
1 TA
65121943 TATAGTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (13 bp):
TAAATTTTTACTC
Found at i:65125081 original size:7 final size:6
Alignment explanation
Indices: 65125043--65125078 Score: 63
Period size: 6 Copynumber: 5.8 Consensus size: 6
65125033 ATCTCTTCTC
65125043 TTTTTA TTTTTA TTTTTA TTTTTA TTGTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TT-TTTA TTTTT
65125079 TATCTTCTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:65125792 original size:3 final size:3
Alignment explanation
Indices: 65125784--65126065 Score: 564
Period size: 3 Copynumber: 94.0 Consensus size: 3
65125774 TTTAGCAATT
65125784 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
65125832 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
65125880 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
65125928 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
65125976 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
65126024 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
65126066 CATTTCTTAC
Statistics
Matches: 279, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 279 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:65126084 original size:27 final size:27
Alignment explanation
Indices: 65126054--65126105 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
65126044 ATTATTATTA
*
65126054 TTATTATTAT-TACATTTCTTACATAAC
1 TTATTATTATATACA-TACTTACATAAC
*
65126081 TTATTTTTATATACATACTTACATA
1 TTATTATTATATACATACTTACATA
65126106 TTGAACTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (27 bp):
TTATTATTATATACATACTTACATAAC
Found at i:65126742 original size:110 final size:110
Alignment explanation
Indices: 65126549--65127047 Score: 898
Period size: 110 Copynumber: 4.6 Consensus size: 110
65126539 ATATTTGGCA
*
65126549 TTTGGAAATTTGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATAG
1 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATAG
65126614 CTTAATATCCTTTTCAAAAATTTCAAAATATGGCAATGTTTTGCG
66 CTTAATATCCTTTTCAAAAATTTCAAAATATGGCAATGTTTTGCG
65126659 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATAG
1 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATAG
65126724 CTTAATATCCTTTTCAAAAATTTCAAAATATGGCAATGTTTTGCG
66 CTTAATATCCTTTTCAAAAATTTCAAAATATGGCAATGTTTTGCG
65126769 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATAG
1 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATAG
65126834 CTTAATATCCTTTTCAAAAATTTCAAAATATGGCAATGTTTTGCG
66 CTTAATATCCTTTTCAAAAATTTCAAAATATGGCAATGTTTTGCG
*
65126879 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGCTCAACCAAATAG
1 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATAG
* *
65126944 CTAAATATCC-TTTCAAAAATTTCAAAATAAGGCAATGTTTTGCG
66 CTTAATATCCTTTTCAAAAATTTCAAAATATGGCAATGTTTTGCG
* * * *
65126988 TTTGGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTTTCGA--TTTCTCGTTTAACCAAAT
1 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAAT
65127048 TACCAAATAT
Statistics
Matches: 380, Mismatches: 9, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
106 16 0.04
108 25 0.07
109 47 0.12
110 292 0.77
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (110 bp):
TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATAG
CTTAATATCCTTTTCAAAAATTTCAAAATATGGCAATGTTTTGCG
Found at i:65128468 original size:19 final size:20
Alignment explanation
Indices: 65128428--65128471 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
65128418 GTCTATTTAG
* *
65128428 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
65128447 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
65128466 GCATTA
1 GCATTA
65128472 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:65130450 original size:7 final size:6
Alignment explanation
Indices: 65130441--65130500 Score: 59
Period size: 6 Copynumber: 9.7 Consensus size: 6
65130431 AAGAAAAAGA
* * *
65130441 AAAATC AAAATC AAAATC AAAGTC AAAATG AAAATGAA AAAATC AAAAATC
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAAT--C AAAATC -AAAATC
65130492 AAAAT- AAAA
1 AAAATC AAAA
65130501 AGAAAACAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
5 4 0.09
6 31 0.67
7 6 0.13
8 5 0.11
ACGTcount: A:0.70, C:0.10, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAATC
Found at i:65132778 original size:45 final size:45
Alignment explanation
Indices: 65132729--65132814 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
65132719 TGAAGACATT
* *
65132729 AGATCTTGCTTTCCTGTAC-TGACTGCGAAGCAGATCAAAGACAAC
1 AGATCTTGCCTTCCTG-ACTTGACAGCGAAGCAGATCAAAGACAAC
* *
65132774 AGATCTTGCCTTCCTGCCTTGACAGTGAAGCAGATCAAAGA
1 AGATCTTGCCTTCCTGACTTGACAGCGAAGCAGATCAAAGA
65132815 TACAAGCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 1 0.03
45 35 0.97
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (45 bp):
AGATCTTGCCTTCCTGACTTGACAGCGAAGCAGATCAAAGACAAC
Found at i:65133024 original size:87 final size:87
Alignment explanation
Indices: 65132773--65133029 Score: 302
Period size: 87 Copynumber: 2.9 Consensus size: 87
65132763 TCAAAGACAA
* * * *
65132773 CAGATCTTGCCTTCCTGCCTTGACAGTGAAGCAGATC-AAAGATACAAGCTTTGTCTCCATCGGT
1 CAGATCTTGCCTTCCTGCATTAACAGTGAAGCAGATCGAAA-ACA-AAGCATTGTCTCCATCGGT
* * * *
65132837 TGCGGTGGAACTGGTTGATGATAG
64 TGCAGTGGAGCTGATTGAAGATAG
* ** * * *
65132861 CAAATCAGGCCTTCCTGCGTTAACAGCGAAGCAGATTGAAAACAAAGCATTGTCTCCATCGGTTG
1 CAGATCTTGCCTTCCTGCATTAACAGTGAAGCAGATCGAAAACAAAGCATTGTCTCCATCGGTTG
*
65132926 TAGTGGAGCTGATTGAAGATAG
66 CAGTGGAGCTGATTGAAGATAG
* * * *
65132948 CAGATCTTGCCTTCCTGCATTAACAATGAAACAGATCGAAAACAAAGCCTTGCCTCCATCGGTTG
1 CAGATCTTGCCTTCCTGCATTAACAGTGAAGCAGATCGAAAACAAAGCATTGTCTCCATCGGTTG
65133013 CAGT-GATGCTGATTGAA
66 CAGTGGA-GCTGATTGAA
65133030 TAAATGATCT
Statistics
Matches: 142, Mismatches: 25, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
86 2 0.01
87 105 0.74
88 32 0.23
89 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (87 bp):
CAGATCTTGCCTTCCTGCATTAACAGTGAAGCAGATCGAAAACAAAGCATTGTCTCCATCGGTTG
CAGTGGAGCTGATTGAAGATAG
Found at i:65133131 original size:44 final size:45
Alignment explanation
Indices: 65133077--65133755 Score: 292
Period size: 44 Copynumber: 15.6 Consensus size: 45
65133067 ATCGTGTCAG
65133077 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGAT-AGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAAGTA
* * * *
65133121 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATGAAG-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGAT-AAGTA
* ** * * * *
65133165 ATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCG-CG-TCAG--
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGATAAGTA
* * * * * ** **
65133206 GTCTTATTTCCTTGAGATTACAGTGAAACAGACCGAAGA-ATTTCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAAGT-A
* * *
65133251 GATTTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCT-AGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAAGTA
* ** ** * *
65133296 ATCCTATCTCTTTGAGATTACAGTGGAGTGGATT-AAAATGAAG-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGAT-AAGTA
* * ** * * * *
65133340 ATCTTATCTCTCTGA-AGTTATAGCAGAGTAGATAG-CG-TCAG--
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGATAAGTA
* * * * ** **
65133381 GTCTTATTTCCTTGAGATTACAGTGGAACAGACCGAAGA-ATTTCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAAGT-A
** *
65133426 TATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCT-AGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAAGTA
* * * * *
65133471 ATCCTATCTCCCTGATATTACAGTGGAGCGGATT-AAAATAAAG-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGAT-AAGTA
* * * * * * *
65133515 ATCTTATCTCTCTGA-AGTTAAAGTAGAGTAGATCG-TG-TCAG--
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGATAAGTA
* * *
65133556 ATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGCT-AGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAAGTA
* * * * * * *
65133600 ATCCTATCTTCCTGAGATTATAGTGGAGCGGATT-AAAATAAATG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAAGTA
** * * * * *
65133644 ATCTTATCTTTCTGA-AGTTACAGTAGAGTAGATCG-TG-TCA--A
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGATAAGTA
* *
65133685 ATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGAT-AGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAAGTA
*
65133729 ATCCTATCTCCCTGAGATTACAGTGGA
1 ATCTTATCTCCCTGAGATTACAGTGGA
65133756 ACGGATTAAA
Statistics
Matches: 450, Mismatches: 144, Indels: 82
0.67 0.21 0.12
Matches are distributed among these distances:
41 97 0.22
42 17 0.04
43 24 0.05
44 243 0.54
45 8 0.02
46 61 0.14
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (45 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAAGTA
Found at i:65133274 original size:87 final size:87
Alignment explanation
Indices: 65133164--65133459 Score: 282
Period size: 87 Copynumber: 3.4 Consensus size: 87
65133154 TAAAATGAAG
* * *
65133164 GATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATTTCCTTGAGATTACAG
1 GATCTTATCTCCCTGAAGTTACAGCAGAGCAGATAGCGTCAGGTCTTATTTCCTTGAGATTACAG
*
65133229 TGAAACAGACCGAAGAATTTCA
66 TGGAACAGACCGAAGAATTTCA
* * * * * *
65133251 GATTTTATCTCCCTG-AGATTACAGCGGAGCAGATTGAAGC-T-AGTAATCCTATCTCTTTGAGA
1 GATCTTATCTCCCTGAAG-TTACAGCAGAGCAGA-T--AGCGTCAG--GTCTTATTTCCTTGAGA
*** ** **
65133313 TTACAGTGGAGTGGA-TTAA-AA-TGAA
60 TTACAGTGGAACAGACCGAAGAATTTCA
* * *
65133338 GGATCTTATCTCTCTGAAGTTATAGCAGAGTAGATAGCGTCAGGTCTTATTTCCTTGAGATTACA
1 -GATCTTATCTCCCTGAAGTTACAGCAGAGCAGATAGCGTCAGGTCTTATTTCCTTGAGATTACA
65133403 GTGGAACAGACCGAAGAATTTCA
65 GTGGAACAGACCGAAGAATTTCA
*
65133426 TATCTTATCTCCCTG-AGATTACAGCAGAGCAGAT
1 GATCTTATCTCCCTGAAG-TTACAGCAGAGCAGAT
65133460 TGAAGCTAGT
Statistics
Matches: 158, Mismatches: 37, Indels: 28
0.71 0.17 0.13
Matches are distributed among these distances:
85 28 0.18
86 7 0.04
87 60 0.38
88 32 0.20
89 5 0.03
90 26 0.16
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (87 bp):
GATCTTATCTCCCTGAAGTTACAGCAGAGCAGATAGCGTCAGGTCTTATTTCCTTGAGATTACAG
TGGAACAGACCGAAGAATTTCA
Found at i:65133284 original size:175 final size:175
Alignment explanation
Indices: 65133073--65133578 Score: 850
Period size: 175 Copynumber: 2.9 Consensus size: 175
65133063 GTAGATCGTG
* *
65133073 TCAGATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
*
65133138 TTACAGTGGAGCGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCGT
66 TTACAGTGGAGCGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTAAAGCAGAGTAGATCGCGT
65133203 CAGGTCTTATTTCCTTGAGATTACAGTGAAACAGACCGAAGAATT
131 CAGGTCTTATTTCCTTGAGATTACAGTGAAACAGACCGAAGAATT
* **
65133248 TCAGATTTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCTTTGAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* * *
65133313 TTACAGTGGAGTGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTATAGCAGAGTAGATAGCGT
66 TTACAGTGGAGCGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTAAAGCAGAGTAGATCGCGT
*
65133378 CAGGTCTTATTTCCTTGAGATTACAGTGGAACAGACCGAAGAATT
131 CAGGTCTTATTTCCTTGAGATTACAGTGAAACAGACCGAAGAATT
* * *
65133423 TCATATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* * *
65133488 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAAAGTAGAGTAGATCGTGT
66 TTACAGTGGAGCGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTAAAGCAGAGTAGATCGCGT
* *
65133553 CAGATCTTATCTCCTTGAGATTACAG
131 CAGGTCTTATTTCCTTGAGATTACAG
65133579 CGGAGCAGAT
Statistics
Matches: 308, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
175 308 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.30
Consensus pattern (175 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAATGAAGGATCTTATCTCTCTGAAGTTAAAGCAGAGTAGATCGCGT
CAGGTCTTATTTCCTTGAGATTACAGTGAAACAGACCGAAGAATT
Found at i:65133306 original size:129 final size:128
Alignment explanation
Indices: 65133043--65133285 Score: 299
Period size: 129 Copynumber: 1.9 Consensus size: 128
65133033 ATGATCTTAT
* * * *
65133043 CTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAGATCTTATCTCCCTGAGATTACAGTGGAGCAG
1 CTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGATCTTATCTCCCTGAGATTACAGTGAAACAG
** * * * *
65133108 ATTGAAGATAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATGAAGGATCTTA
66 ACCGAAGATAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAATGAAGAATCCTA
* * *
65133171 TCTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGGTCTTATTTCCTTGAGATTACAGTGAAACA
1 -CTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGATCTTATCTCCCTGAGATTACAGTGAAACA
* **
65133236 GACCGAAGA-ATTTCAGATTTTATCTCCCTGAGATTACAGCGGAGCAGATT
65 GACCGAAGATA-GT-A-ATCCTATCTCCCTGAGATTACAGCGGAGCAGATT
65133286 GAAGCTAGTA
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
128 1 0.01
129 65 0.67
130 1 0.01
131 30 0.31
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (128 bp):
CTCTCTGAAGTTACAGCAGAGTAGATCGCGTCAGATCTTATCTCCCTGAGATTACAGTGAAACAG
ACCGAAGATAGTAATCCTATCTCCCTGAGATTACAGCGGAGCAGATTAAAATGAAGAATCCTA
Found at i:65133576 original size:129 final size:129
Alignment explanation
Indices: 65133427--65133869 Score: 643
Period size: 129 Copynumber: 3.4 Consensus size: 129
65133417 AGAATTTCAT
* *
65133427 ATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* *
65133492 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAAAGTAGAGTAGATCGTGTCAG
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAA
* * *
65133556 ATCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTTCCTGAGATTAT
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* *
65133621 AGTGGAGCGGATTAAAATAAATGATCTTATCTTTCTGAAGTTACAGTAGAGTAGATCGTGTCAA
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAA
* *
65133685 ATCTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
* * * ** *
65133750 AGTGGAACGGATTAAAACAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
66 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAA
* * * * * * * * * *
65133814 GTTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCC
65133870 CGACATTGCG
Statistics
Matches: 280, Mismatches: 34, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
129 280 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (129 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTAC
AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTGTCAA
Found at i:65133974 original size:258 final size:255
Alignment explanation
Indices: 65133431--65133975 Score: 558
Period size: 258 Copynumber: 2.1 Consensus size: 255
65133421 TTTCATATCT
* * *
65133431 TATCTCCCTGAGATTACAGCAGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATTACAGTG
1 TATCTCCCTGAGATTACAACAGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACAGTG
* * * **
65133496 GAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAAAGTAGAGTAGATCGTGTCAGATCTT
66 GAACGGATTAAAACAAAGGATCTTATCTCTCTAAAGTTAAAGTAGAGTAGATCGCATCAGATCTT
* * * * * * * *
65133561 ATCTCCTTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTTCCTGAGATTATAGTGG
131 ACCTCCCTGAGATTACAGCGGAGCACATTGAAGCCAGTAATCCTATCTCCCCGACATTAGAGTGG
* * * * *** *
65133626 AGCGGATTAAAATAAATGATCTTATCTTTCTGAAGTTACAGTAGAGTAGATCGTGTCAAATCT
196 AGCGG--TAAAATAAATGA-CCTATCTTCCTGAAGTTACAGTAGAGCAGATAGAACCAAATCC
* * *
65133689 TATCTCCCTGAGATTATAGCGGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACAGTG
1 TATCTCCCTGAGATTACAACAGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACAGTG
* * *
65133754 GAACGGATTAAAACAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTTTT
66 GAACGGATTAAAACAAAGGATCTTATCTCTCTAAAGTTAAAGTAGAGTAGATCGCATCAGATCTT
* * * * * *
65133819 ACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCCGACATTGCGGAGT
131 ACCTCCCTGAGATTACAGCGGAGCACATTGAAGCCAGTAATCCTATCTCCCCGACATT--AGAGT
*** * * * *
65133884 GG-GCCGG-AGCGTCAATG-CCTATCTTCCTGAAGTTGCAGTGGAGCGGATTAGAACCACAGATC
194 GGAG-CGGTAAAATAAATGACCTATCTTCCTGAAGTTACAGTAGAGCAGA-TAGAACCA-A-ATC
65133946 C
255 C
* * *
65133947 TATCTCTCTGA-AGTTGCAATAGAGCAGAT
1 TATCTCCCTGAGA-TTACAACAGAGCAGAT
65133976 CGCATCCAGT
Statistics
Matches: 233, Mismatches: 47, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
255 24 0.10
256 4 0.02
257 8 0.03
258 188 0.81
259 1 0.00
260 8 0.03
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (255 bp):
TATCTCCCTGAGATTACAACAGAGCAGATTGAAGATAGTAATCCTATCTCCCTGAGATTACAGTG
GAACGGATTAAAACAAAGGATCTTATCTCTCTAAAGTTAAAGTAGAGTAGATCGCATCAGATCTT
ACCTCCCTGAGATTACAGCGGAGCACATTGAAGCCAGTAATCCTATCTCCCCGACATTAGAGTGG
AGCGGTAAAATAAATGACCTATCTTCCTGAAGTTACAGTAGAGCAGATAGAACCAAATCC
Found at i:65134695 original size:7 final size:6
Alignment explanation
Indices: 65134657--65134692 Score: 63
Period size: 6 Copynumber: 5.8 Consensus size: 6
65134647 ATCTCTTCTC
65134657 TTTTTA TTTTTA TTTTTA TTTTTA TTGTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TT-TTTA TTTTT
65134693 TATCTTCTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:65135734 original size:3 final size:3
Alignment explanation
Indices: 65135389--65135716 Score: 647
Period size: 3 Copynumber: 109.3 Consensus size: 3
65135379 GATTTAGTCC
*
65135389 TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
65135437 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
65135485 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
65135533 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
65135581 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
65135629 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
65135677 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
65135717 NTTTGTTCAC
Statistics
Matches: 323, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
3 323 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:65135954 original size:110 final size:109
Alignment explanation
Indices: 65135785--65136101 Score: 397
Period size: 110 Copynumber: 2.9 Consensus size: 109
65135775 AAAGAAAATT
* * * * * * * * *
65135785 TTTCTAAATGAGGGAATATTTGGCATTTGAAAATTTGAGAAAACATACCCTAAGGTGCTGGGTGT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAAAAAACATGCCCTAAGGTGCTGGGTGT
*
65135850 CGATTTTTCTCGTTCAACCAAATAGCTTAATATCCTTTTCAAAAA
66 CGATTTTTCTCGTTCAACCAAATAGCTAAATATCC-TTTCAAAAA
* * *
65135895 TTTCAAAATATGGCAATGTTTTGCGTTTGGAAATTCGAAAAAACATGCCTTAAGGTGCTGGGTGT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAAAAAACATGCCCTAAGGTGCTGGGTGT
* *
65135960 TGATTTTTCTCGCTCAACCAAATAGCTAAATATCCTTTCAAAAA
66 CGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAA
* ** * *
65136004 TTTCAAAATAAGGTAATATTTTGCGTTTGGAAATTCG-AGGAACGTGCCCTAAGGTGCTGGGTTT
1 TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAAAAAACATGCCCTAAGGTGCTGGGTGT
* * *
65136068 CGA--TTTCTCGTTTAACCAAATTGCCAAATATCCT
66 CGATTTTTCTCGTTCAACCAAATAGCTAAATATCCT
65136102 CTTGAATTTT
Statistics
Matches: 179, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
106 27 0.15
108 24 0.13
109 43 0.24
110 85 0.47
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (109 bp):
TTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAAAAAACATGCCCTAAGGTGCTGGGTGT
CGATTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTCAAAAA
Found at i:65142128 original size:18 final size:18
Alignment explanation
Indices: 65142092--65142130 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
65142082 TCAAATTTGT
65142092 ATTTTATTTTATTTTATAC
1 ATTTTATTTTA-TTTATAC
65142111 ATTTTAATTTTA-TTATAC
1 ATTTT-ATTTTATTTATAC
65142129 AT
1 AT
65142131 ACTTTTCTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
19 5 0.26
20 6 0.32
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTTTATTTTATTTATAC
Found at i:65147490 original size:27 final size:27
Alignment explanation
Indices: 65147460--65147637 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
65147450 ATATTGAGTC
* * * *
65147460 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
65147487 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65147514 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
65147542 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
65147569 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
65147596 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65147623 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65147638 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:65147599 original size:82 final size:81
Alignment explanation
Indices: 65147481--65147636 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
65147471 TGCTATATAA
* *
65147481 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
65147546 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
65147563 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
65147627 CACTTAGTGC
65 CACTTAGTGC
65147637 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:65150289 original size:9 final size:9
Alignment explanation
Indices: 65150272--65150306 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
65150262 TGTCCTCTCT
65150272 TTTTTCTTC
1 TTTTTCTTC
*
65150281 TTCTTCTTC
1 TTTTTCTTC
65150290 TTTTTCTTC
1 TTTTTCTTC
65150299 TTTTTCTT
1 TTTTTCTT
65150307 TTTCCTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTTCTTC
Found at i:65150318 original size:15 final size:15
Alignment explanation
Indices: 65150278--65150310 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
65150268 CTCTTTTTTC
*
65150278 TTCTTCTTCTTCTTT
1 TTCTTCTTTTTCTTT
65150293 TTCTTCTTTTTCTTT
1 TTCTTCTTTTTCTTT
65150308 TTC
1 TTC
65150311 CTTTTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (15 bp):
TTCTTCTTTTTCTTT
Found at i:65154274 original size:3 final size:3
Alignment explanation
Indices: 65153942--65154259 Score: 636
Period size: 3 Copynumber: 106.0 Consensus size: 3
65153932 ATAAATGCGT
65153942 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
65153990 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
65154038 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
65154086 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
65154134 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
65154182 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
65154230 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
65154260 GAAAAACGAT
Statistics
Matches: 315, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 315 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:65158241 original size:42 final size:42
Alignment explanation
Indices: 65158189--65158271 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
65158179 AATATGTGTG
* *
65158189 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA
1 AAACATTTGAAATTCAAACATTTGAACTCTTATTCTTATCCA
*
65158231 AAACATTTGAAATTCAAACATTTTAACTCTTATTCTTATCC
1 AAACATTTGAAATTCAAACATTTGAACTCTTATTCTTATCC
65158272 TTTTGAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.40
Consensus pattern (42 bp):
AAACATTTGAAATTCAAACATTTGAACTCTTATTCTTATCCA
Found at i:65164707 original size:42 final size:42
Alignment explanation
Indices: 65164655--65164737 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
65164645 AATATGTGTG
* *
65164655 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCCA
1 AAACATTTGAAATTCAAACATTTGAACTCTTATTCTTATCCA
*
65164697 AAACATTTGAAATTCAAACATTTTAACTCTTATTCTTATCC
1 AAACATTTGAAATTCAAACATTTGAACTCTTATTCTTATCC
65164738 TTTTGAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.40
Consensus pattern (42 bp):
AAACATTTGAAATTCAAACATTTGAACTCTTATTCTTATCCA
Found at i:65177076 original size:36 final size:36
Alignment explanation
Indices: 65177036--65177106 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
65177026 CAAACAGATC
* * *
65177036 AGATACAGA-TATAGATACAATTTCAAATTCAGATAT
1 AGATACA-ATTATAGATACAAATACAAATGCAGATAT
*
65177072 AGATACAATTTTAGATACAAATACAAATGCAGATA
1 AGATACAATTATAGATACAAATACAAATGCAGATA
65177107 CAAATTCAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 1 0.03
36 29 0.97
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.28
Consensus pattern (36 bp):
AGATACAATTATAGATACAAATACAAATGCAGATAT
Found at i:65177107 original size:12 final size:12
Alignment explanation
Indices: 65177092--65177124 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
65177082 TTAGATACAA
65177092 ATACAAATGCAG
1 ATACAAATGCAG
*
65177104 ATACAAATTCAG
1 ATACAAATGCAG
65177116 ATACAAATG
1 ATACAAATG
65177125 TAGACACATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.52, C:0.15, G:0.12, T:0.21
Consensus pattern (12 bp):
ATACAAATGCAG
Found at i:65193065 original size:6 final size:6
Alignment explanation
Indices: 65193047--65193090 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
65193037 TGTAAAAGAA
* * *
65193047 TCATTT CTCATTT TCATTT TCATTT CCATTT CCATTT CCATTT T
1 TCATTT -TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT T
65193091 AAGAAAACCA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.16, C:0.25, G:0.00, T:0.59
Consensus pattern (6 bp):
TCATTT
Found at i:65193071 original size:12 final size:12
Alignment explanation
Indices: 65193048--65193090 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
65193038 GTAAAAGAAT
*
65193048 CATTTCTCATTTT
1 CATTT-TCATTTC
65193061 CATTTTCATTTC
1 CATTTTCATTTC
*
65193073 CATTTCCATTTC
1 CATTTTCATTTC
65193085 CATTTT
1 CATTTT
65193091 AAGAAAACCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 22 0.81
13 5 0.19
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (12 bp):
CATTTTCATTTC
Found at i:65193082 original size:18 final size:19
Alignment explanation
Indices: 65193047--65193089 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
65193037 TGTAAAAGAA
*
65193047 TCATTTCTCATTTTCATTT
1 TCATTTCTCATTTCCATTT
65193066 TCATTTC-CATTTCCATTT
1 TCATTTCTCATTTCCATTT
*
65193084 CCATTT
1 TCATTT
65193090 TAAGAAAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.58
Consensus pattern (19 bp):
TCATTTCTCATTTCCATTT
Found at i:65198330 original size:40 final size:40
Alignment explanation
Indices: 65198150--65198370 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
65198140 CTCGTTCAAG
* * * * *
65198150 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* *
65198189 TGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
65198229 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* * *
65198269 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* ** * * * *
65198309 GGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-AA
1 TGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACGAA
* *
65198349 AGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
65198371 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 35 0.22
40 115 0.73
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
Found at i:65198379 original size:41 final size:41
Alignment explanation
Indices: 65198302--65198379 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
65198292 TTAGTATCTC
* * *
65198302 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
65198343 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
65198380 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:65201722 original size:23 final size:23
Alignment explanation
Indices: 65201683--65201728 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
65201673 TTACGACAAG
* *
65201683 AAATATAAAATATAATATAAAGA
1 AAATATAAAATAGAATAAAAAGA
65201706 AAATA-AAAATAGGAATAAAAAGA
1 AAATATAAAATA-GAATAAAAAGA
65201729 CGAAGTGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.20
Consensus pattern (23 bp):
AAATATAAAATAGAATAAAAAGA
Found at i:65218332 original size:60 final size:60
Alignment explanation
Indices: 65218239--65218483 Score: 490
Period size: 60 Copynumber: 4.1 Consensus size: 60
65218229 CCTTAGATAC
65218239 ATCCATTTAACTTTAGGAAGCTTGCATTATGTCAAGCATGGATAATTTGAACTCTTTACT
1 ATCCATTTAACTTTAGGAAGCTTGCATTATGTCAAGCATGGATAATTTGAACTCTTTACT
65218299 ATCCATTTAACTTTAGGAAGCTTGCATTATGTCAAGCATGGATAATTTGAACTCTTTACT
1 ATCCATTTAACTTTAGGAAGCTTGCATTATGTCAAGCATGGATAATTTGAACTCTTTACT
65218359 ATCCATTTAACTTTAGGAAGCTTGCATTATGTCAAGCATGGATAATTTGAACTCTTTACT
1 ATCCATTTAACTTTAGGAAGCTTGCATTATGTCAAGCATGGATAATTTGAACTCTTTACT
65218419 ATCCATTTAACTTTAGGAAGCTTGCATTATGTCAAGCATGGATAATTTGAACTCTTTACT
1 ATCCATTTAACTTTAGGAAGCTTGCATTATGTCAAGCATGGATAATTTGAACTCTTTACT
65218479 ATCCA
1 ATCCA
65218484 AAATATCTCA
Statistics
Matches: 185, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 185 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (60 bp):
ATCCATTTAACTTTAGGAAGCTTGCATTATGTCAAGCATGGATAATTTGAACTCTTTACT
Found at i:65229488 original size:25 final size:26
Alignment explanation
Indices: 65229454--65229507 Score: 92
Period size: 27 Copynumber: 2.1 Consensus size: 26
65229444 AAAATACTTA
65229454 GTCTGCCGTA-TTGGCACGTTTCTTT
1 GTCTGCCGTATTTGGCACGTTTCTTT
65229479 GTCTGCCGTATTTTGGCACGTTTCTTT
1 GTCTGCCGTA-TTTGGCACGTTTCTTT
65229506 GT
1 GT
65229508 TTTTCTGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 10 0.37
27 17 0.63
ACGTcount: A:0.07, C:0.22, G:0.24, T:0.46
Consensus pattern (26 bp):
GTCTGCCGTATTTGGCACGTTTCTTT
Found at i:65236147 original size:229 final size:229
Alignment explanation
Indices: 65235746--65236189 Score: 825
Period size: 229 Copynumber: 1.9 Consensus size: 229
65235736 CAATCTGCTG
65235746 ATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAAGTTAGAAAGTGTGACCCT
1 ATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAAGTTAGAAAGTGTGACCCT
* * *
65235811 TGTAGTGTGCATTTTTTCTAACTTTTTCCTCAAGGTTTCATATGTTCTGGATTTTGTCTGGGATC
66 TGTAGTGTGCATTTTTTCTAACTTTTTCCTCAAGGTTTCATATGTTCTCGATTTAGTCCGGGATC
*
65235876 ATTTTTAAAAATTTTTAAGGCCTTGAGGGCTCCCTTAAGGGATAATATGCATGTGTTTCAATGAT
131 ATTTTTAAAAATTTTTAAGGCCTTGAGGGCTCCATTAAGGGATAATATGCATGTGTTTCAATGAT
65235941 TATGCTATGAGTTATCGAATTCAATATGCTCACC
196 TATGCTATGAGTTATCGAATTCAATATGCTCACC
65235975 ATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAAGTTAGAAAGTGTGACCCT
1 ATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAAGTTAGAAAGTGTGACCCT
*
65236040 TGTAGTGTTCATTTTTTCTAACTTTTTCCTCAAGGTTTCATATGTTCTCGATTTAGTCCGGGATC
66 TGTAGTGTGCATTTTTTCTAACTTTTTCCTCAAGGTTTCATATGTTCTCGATTTAGTCCGGGATC
* *
65236105 ATTTTTAAAATTTTTTAAGGCCTTGAGGGCTCGATTAAGGGATAATATGCATGTGTTTCAATGAT
131 ATTTTTAAAAATTTTTAAGGCCTTGAGGGCTCCATTAAGGGATAATATGCATGTGTTTCAATGAT
65236170 TATGCTATGAGTTATCGAAT
196 TATGCTATGAGTTATCGAAT
65236190 GTTTGGAAAT
Statistics
Matches: 208, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
229 208 1.00
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (229 bp):
ATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAAGTTAGAAAGTGTGACCCT
TGTAGTGTGCATTTTTTCTAACTTTTTCCTCAAGGTTTCATATGTTCTCGATTTAGTCCGGGATC
ATTTTTAAAAATTTTTAAGGCCTTGAGGGCTCCATTAAGGGATAATATGCATGTGTTTCAATGAT
TATGCTATGAGTTATCGAATTCAATATGCTCACC
Found at i:65237194 original size:647 final size:646
Alignment explanation
Indices: 65235961--65238069 Score: 3648
Period size: 647 Copynumber: 3.3 Consensus size: 646
65235951 GTTATCGAAT
65235961 TCAATATGCTCACCATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAAGTTA
1 TCAATATGCTCACCATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAAGTTA
*
65236026 GAAAGTGTGACCCTTGTAGTGTTCATTTTTTCTAACTTTTTCCTCAAGGTTTCATATGTTCTCGA
66 GAAAGTGTGACCCTTGTAGTGTGCATTTTTTCTAACTTTTTCCTCAAGGTTTCATATGTTCTCGA
65236091 TTTAGTCCGGGATCATTTTTAAAATTTTTTAAGGCCTTGAGGGCTCGATTAAGGGATAATATGCA
131 TTTAGTCCGGGATCATTTTTAAAATTTTTTAAGGCCTTGAGGGCTCGATTAAGGGATAATATGCA
* * *
65236156 TGTGTTTCAATG-ATTATGCTATGAGTTATCGAATGTTTGGAAATGAATTTTTCATGTTACGATT
196 TGTGTTTCAATGAATTATGCTATGATTTATCTAATGTTTGGAAATGAATTTTTTATGTTACGATT
* ** ** * * * *
65236220 TTACGGCAATGCTTTGTAGGCGTATTTTAGTGACGAATACGGTTAGGGGTGTTACATTTAGTGAT
261 TTACGGTAATGCTCAGTAACCCTATTTGAGTGAC-AATACGGTTAGGGGTGTTACGTTTAGTGGT
* * * * * *
65236285 ATCAGAGCTACAATTTAGTTGATTCTCAAACTAAACTTAGCATGGATAGAGTCTAGAAATACATG
325 ATCAGAGCAAAAATTTAGTCGATTCTCAGACTAAACTTAGCATGGATACAGTCTAGAAATATATG
* * ** * *
65236350 ACACTGGACTAACCGAAGATAGTGTGATCGCTTTTCATTATC-TTCAAATTGTTCTTATATAGGT
390 ACACTTGACTAACCGGAGATAGTGTGAGAGCTTTTGATTATCTTTGAAA-TGTTCTTATATAGGT
** ** * *
65236414 AAAAGATGTTGTCGGGATCTAATCTCGTAGGTTCTAATGAAATAGAAATTTTTATTCCACCTACT
454 AAAAGATGTTGTCGGGATCTAATCAAGTAGGTTCTAATGAGGTAGAAAGTTCTATTCCACCTACT
*
65236479 ACCGAGGAAAGTATGCAGAATGAACCTGGACCGTAAGAATCTAGAGAAGTAGCACCTAATTTATT
519 AACGAGGAAAGTATGCAGAATGAACCTGGACCGTAAGAATCTAGAGAAGTAGCACCTAATTTATT
*
65236544 TCTTCGTATGATGCATGACATGTACGATGCGCATTTAATGGTAAACTCCACAATTCCACAACC
584 TCTTCGTATGATGCATGACATGTACGATGCGCATTTAATGGTAAACTCCACAGTTCCACAACC
65236607 TCAATATGCTCACCATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAAGTTA
1 TCAATATGCTCACCATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAAGTTA
*
65236672 GAAAGTGTGACCCTTGTAGTGTGCATTTTTTCTAACTTTTTCCTCACGGTTTCATATGTTCTCGA
66 GAAAGTGTGACCCTTGTAGTGTGCATTTTTTCTAACTTTTTCCTCAAGGTTTCATATGTTCTCGA
65236737 TTTAGTCCGGGATCATTTTTAAAATTTTTTAAGGCCTTGAGGGCTCGATTAAGGGATAATATGCA
131 TTTAGTCCGGGATCATTTTTAAAATTTTTTAAGGCCTTGAGGGCTCGATTAAGGGATAATATGCA
65236802 TGTGTTTCAATGAATTATGCTATGATTTATCTAATGTTTGGAAATGAATTTTTTATGTTACGATT
196 TGTGTTTCAATGAATTATGCTATGATTTATCTAATGTTTGGAAATGAATTTTTTATGTTACGATT
*
65236867 TTACGGTAATGCTCAGTAACCCTATTTGAGTGACAATTACGGTTAGGGGTGTTACGTTTGGTGGT
261 TTACGGTAATGCTCAGTAACCCTATTTGAGTGACAA-TACGGTTAGGGGTGTTACGTTTAGTGGT
65236932 ATCAGAGCAAAAATTTAGTCGATTCTCAGACTAAACTTAGCATGGATACAGTCTAGAAATATATG
325 ATCAGAGCAAAAATTTAGTCGATTCTCAGACTAAACTTAGCATGGATACAGTCTAGAAATATATG
*
65236997 ACACTTGACTAACCGGAGATAGTGTTAGAGCTTTTGATTATCTTTGAAATGTTCTTATATAGGTA
390 ACACTTGACTAACCGGAGATAGTGTGAGAGCTTTTGATTATCTTTGAAATGTTCTTATATAGGTA
*
65237062 AAAGATGTTGCCGGGATCTAATCAAGTAGGTTCTAATGAGGTAGAAAGTTCTATTCCACCTACTA
455 AAAGATGTTGTCGGGATCTAATCAAGTAGGTTCTAATGAGGTAGAAAGTTCTATTCCACCTACTA
* *
65237127 ACGAGGAAGGTACGCAGAATGAACCTGGACCGTAAGAATCTAGAGAAGTAGCACCTAATTTATTT
520 ACGAGGAAAGTATGCAGAATGAACCTGGACCGTAAGAATCTAGAGAAGTAGCACCTAATTTATTT
65237192 CTTCGTATGATGCATGACATGTACGATGCGCATTTAATGGTAAACTCCACAGTTCCACAACC
585 CTTCGTATGATGCATGACATGTACGATGCGCATTTAATGGTAAACTCCACAGTTCCACAACC
* * * * *
65237254 TGAATCTGCTCACCATCAAGGTTCGAGTAAGCACTCTGCTCATAGAGTGACCATGTATAAAGTTA
1 TCAATATGCTCACCATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAAGTTA
*
65237319 GAAAGTGTGACCCTTGTAGTGTGCATTTTTTCTAACTTTTTCCTCAATGTTTCATATGTTCTCGA
66 GAAAGTGTGACCCTTGTAGTGTGCATTTTTTCTAACTTTTTCCTCAAGGTTTCATATGTTCTCGA
65237384 TTTAGTCCGGGATCATTTTTAAAATTTTTTAAGGCCTTGAGGGCTCGATTAAGGGATAATATGCA
131 TTTAGTCCGGGATCATTTTTAAAATTTTTTAAGGCCTTGAGGGCTCGATTAAGGGATAATATGCA
*
65237449 TGTGTTTCAATGAATTATGCTATGATTTATCTAATGTTTGAAAATGAATTTTTTATGTTACGATT
196 TGTGTTTCAATGAATTATGCTATGATTTATCTAATGTTTGGAAATGAATTTTTTATGTTACGATT
65237514 TTACGGTAATGCTCAGTAACCCTATTTGAGTGACAAATACGGTTAGGGGTGTTACGTTTAGTGGT
261 TTACGGTAATGCTCAGTAACCCTATTTGAGTGAC-AATACGGTTAGGGGTGTTACGTTTAGTGGT
*
65237579 ATCAGAGCAAAAATTTAGTCGATTCTCAGTCTAAACTTAGCATGGATACAGTCTAGAAATATATG
325 ATCAGAGCAAAAATTTAGTCGATTCTCAGACTAAACTTAGCATGGATACAGTCTAGAAATATATG
*
65237644 ACACTTGACTAACTGGAGATAGTGTGAGAGCTTTTGATTATCTTTGAAATGTTCTTATATAGGTA
390 ACACTTGACTAACCGGAGATAGTGTGAGAGCTTTTGATTATCTTTGAAATGTTCTTATATAGGTA
65237709 AAAGATGTTGTCGGGATCTAATCAAGTAGGTTCTAATGAGGTAGAAAGTTCTATTCCACCTACTA
455 AAAGATGTTGTCGGGATCTAATCAAGTAGGTTCTAATGAGGTAGAAAGTTCTATTCCACCTACTA
* *
65237774 ACGAGGAAAGTATGAAGAATGAACCTGGACCGTAAGAATCTAGGGAAGTAGCACCTAATTTATTT
520 ACGAGGAAAGTATGCAGAATGAACCTGGACCGTAAGAATCTAGAGAAGTAGCACCTAATTTATTT
65237839 CTTCGTATGATGCATGACATGTACGATGCGCATTTAATGGTAAACTCCACAGTTCCACAACC
585 CTTCGTATGATGCATGACATGTACGATGCGCATTTAATGGTAAACTCCACAGTTCCACAACC
* * *
65237901 TCAATCTGCTCACCATTAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAATTTA
1 TCAATATGCTCACCATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAAGTTA
*
65237966 GAAAGT-TGGACCCTTGTAGTGTGCATTTTTTCTAACCTTTTCCTCAAGGTTTCATATGTTCTCG
66 GAAAGTGT-GACCCTTGTAGTGTGCATTTTTTCTAACTTTTTCCTCAAGGTTTCATATGTTCTCG
* *
65238030 ATTTTGTCTGGGATCATTTTTAAAATTTTTTAAGGCCTTG
130 ATTTAGTCCGGGATCATTTTTAAAATTTTTTAAGGCCTTG
65238070 TAGTGTTACG
Statistics
Matches: 1392, Mismatches: 66, Indels: 9
0.95 0.04 0.01
Matches are distributed among these distances:
646 208 0.15
647 1177 0.85
648 7 0.01
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.35
Consensus pattern (646 bp):
TCAATATGCTCACCATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAAGTTA
GAAAGTGTGACCCTTGTAGTGTGCATTTTTTCTAACTTTTTCCTCAAGGTTTCATATGTTCTCGA
TTTAGTCCGGGATCATTTTTAAAATTTTTTAAGGCCTTGAGGGCTCGATTAAGGGATAATATGCA
TGTGTTTCAATGAATTATGCTATGATTTATCTAATGTTTGGAAATGAATTTTTTATGTTACGATT
TTACGGTAATGCTCAGTAACCCTATTTGAGTGACAATACGGTTAGGGGTGTTACGTTTAGTGGTA
TCAGAGCAAAAATTTAGTCGATTCTCAGACTAAACTTAGCATGGATACAGTCTAGAAATATATGA
CACTTGACTAACCGGAGATAGTGTGAGAGCTTTTGATTATCTTTGAAATGTTCTTATATAGGTAA
AAGATGTTGTCGGGATCTAATCAAGTAGGTTCTAATGAGGTAGAAAGTTCTATTCCACCTACTAA
CGAGGAAAGTATGCAGAATGAACCTGGACCGTAAGAATCTAGAGAAGTAGCACCTAATTTATTTC
TTCGTATGATGCATGACATGTACGATGCGCATTTAATGGTAAACTCCACAGTTCCACAACC
Found at i:65238530 original size:509 final size:511
Alignment explanation
Indices: 65237562--65238536 Score: 1571
Period size: 509 Copynumber: 1.9 Consensus size: 511
65237552 ACGGTTAGGG
*
65237562 GTGTTACGTTTAGTGGTATCAGAGCAAAAATTTAGTCGATTCTCAGTCTAAACTTAGCATGGATA
1 GTGTTACGTTTAGTGGTATCAGAGCAAAAATTTAGTCGATTCTCAGACTAAACTTAGCATGGATA
**
65237627 CAGTCTAGAAATATATGACACTTGACTAACTGGAGATAGTGTGAGAGCTTTTGATTATCTTTGAA
66 CAGTCTAGAAATATATGACACTTGACTAACCAGAGATAGTGTGAGAGCTTTTGATTATCTTTGAA
* * *
65237692 ATGTTCTTATATAGGTAAAAGATGTTGTCGGGATCTAATCAAGTAGGTTCTAATGAGGTAGAAAG
131 ATGTTCTTATATAGGTAAAAGATGTCGTCAGGATCTAATCAAGTAGGTTCTAATGAGGCAGAAAG
* * *
65237757 TTCTATTCCACCTACTAACGAGGAAAGTATGAAGAATGAACCTGGACCGTAAGAATCTAGGGAAG
196 TTCTATTCCACCTACTAACGAGGAAAGTACGAAGAATGAACCTGGACCGCAAGAATCTAGAGAAG
* *
65237822 TAGCACCTAATTTATTTCTTCGTATGATGCATGACATGTACGATGCGCATTTAATGGTAAACTCC
261 TAGCACCTAATTTATTTCTTCGTATGATGCATGACATGTAAGATACGCATTTAATGGTAAACTCC
*
65237887 ACAGTTCCACAACCTCAATCTGCTCACCATTAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGAC
326 ACAGTTCCACAACCTCAATCTGCTCACCATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGAC
* *
65237952 CATGTATAAATTTAGAAAGTTGGACCCTTGTAGTGTGCATTTTTTCTAACCTTTTCCTCAAGGTT
391 CATGTATAAAGTTAGAAAGTTGGACCCTTGTAGTGTGCATTTTTTCTAACCTTTTCCTCAAGATT
65238017 TCATA-TGTTCTCGATTTTGTCTGGGATCATTTTTAAAATTTTTTAAGGCCTTGTA
456 TCATAGTGTTCTCGATTTTGTCTGGGATCATTTTTAAAATTTTTTAAGGCCTTGTA
* * *
65238072 GTGTTACGTTTAGTGGTATCAGAGCAACAATTTAGTCGATTCTTAGACTAAACTTAGCGTGGATA
1 GTGTTACGTTTAGTGGTATCAGAGCAAAAATTTAGTCGATTCTCAGACTAAACTTAGCATGGATA
* * * *
65238137 GAGTCTAGAAATA-CTGACACTTGACTAACCAGAGATAGTGTGATAGCTTTTGATTATTTTTGAA
66 CAGTCTAGAAATATATGACACTTGACTAACCAGAGATAGTGTGAGAGCTTTTGATTATCTTTGAA
* * *
65238201 ATGTTCTTATATAGGTAGAAGATGTCGTCAGGATCTAATCAGGTAGGTTCTGATGAGGCAGAAAG
131 ATGTTCTTATATAGGTAAAAGATGTCGTCAGGATCTAATCAAGTAGGTTCTAATGAGGCAGAAAG
* ** *
65238266 CTT-TATTCCGCCTACTAACGAGGAAAGTACGCGGAATGAACCTGGACCGCAATAATCTAGAGAA
196 -TTCTATTCCACCTACTAACGAGGAAAGTACGAAGAATGAACCTGGACCGCAAGAATCTAGAGAA
*
65238330 GTAGCACCTAATTTATTTCTTCGTATGATGCATGACGTGTAAGATACGCATTTAATGGTAAACTC
260 GTAGCACCTAATTTATTTCTTCGTATGATGCATGACATGTAAGATACGCATTTAATGGTAAACTC
* * *
65238395 CACATTTCCACAACTTCTATCTGCTCACCATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGA
325 CACAGTTCCACAACCTCAATCTGCTCACCATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGA
* * * * *
65238460 CCATGTATAAAGTTAGAAAG-TGTGACCCTTGTAGTGTTCATTTTTTTTAGCTTTTTCCTTAAGA
390 CCATGTATAAAGTTAGAAAGTTG-GACCCTTGTAGTGTGCATTTTTTCTAACCTTTTCCTCAAGA
65238524 TTTCATAGTGTTC
454 TTTCATAGTGTTC
65238537 ATTTTTAGCT
Statistics
Matches: 425, Mismatches: 37, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
508 2 0.00
509 343 0.81
510 80 0.19
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (511 bp):
GTGTTACGTTTAGTGGTATCAGAGCAAAAATTTAGTCGATTCTCAGACTAAACTTAGCATGGATA
CAGTCTAGAAATATATGACACTTGACTAACCAGAGATAGTGTGAGAGCTTTTGATTATCTTTGAA
ATGTTCTTATATAGGTAAAAGATGTCGTCAGGATCTAATCAAGTAGGTTCTAATGAGGCAGAAAG
TTCTATTCCACCTACTAACGAGGAAAGTACGAAGAATGAACCTGGACCGCAAGAATCTAGAGAAG
TAGCACCTAATTTATTTCTTCGTATGATGCATGACATGTAAGATACGCATTTAATGGTAAACTCC
ACAGTTCCACAACCTCAATCTGCTCACCATCAAGGTTCAAGTAAGCAATGTGCTCATAGAGTGAC
CATGTATAAAGTTAGAAAGTTGGACCCTTGTAGTGTGCATTTTTTCTAACCTTTTCCTCAAGATT
TCATAGTGTTCTCGATTTTGTCTGGGATCATTTTTAAAATTTTTTAAGGCCTTGTA
Found at i:65239937 original size:647 final size:647
Alignment explanation
Indices: 65238544--65239940 Score: 2273
Period size: 647 Copynumber: 2.2 Consensus size: 647
65238534 TTCATTTTTA
* * * * * *
65238544 GCTATGAGTTATCGAATGTTTGGAAATAAATTTTTTATGTTACGATTTTACGGCAATACTTTGTA
1 GCTATGATTTATCTAATGTTTGGAAATGAATTTTTTATGTTACGATTTTACGGTAATGCTCTGTA
** * * * *
65238609 GGCGTATTTTAGTGACGAATACGGTT-AGGAGTGTTACATTTAGTGATATCAGAGCTACAATTTA
66 ACCCTATTTGAGTGACGAATACGGTTAAGG-GTGTTACATTTAGTGATATCAGAGCAAAAATTTA
*
65238673 GTTGATTCTCAAACTAAACTTAGCATGGATAGAGTCTAGAAATACATGACACTTGACTAACCGGA
130 GTCGATTCTCAAACTAAACTTAGCATGGATAGAGTCTAGAAATACATGACACTTGACTAACCGGA
*
65238738 GATAGTGTGATAGCTTTTGATTATCTTTGAAATGTTCTTATATAGGTAAAAGATGTTGTCGGGAT
195 GATAGTGTGATAGCTTTTGATTATCTTTGAAATGTTCTTATATAGGTAAAAGATGTCGTCGGGAT
* *
65238803 CTAATCAAGTAGGTTCTAATGAGATAGAGAGTTTTATTCCACCTACAAATGAGGAAAGTACGCGG
260 CTAATCAAGTAGGTTCTAATGAGATAGAAAGTTTTATTCCACCTACAAACGAGGAAAGTACGCGG
65238868 AATGAACCTGGACCGTAAGAATCTAGAGAAGTAGCACCTAATTTATTTCTTCGTATGATGCATGA
325 AATGAACCTGGACCGTAAGAATCTAGAGAAGTAGCACCTAATTTATTTCTTCGTATGATGCATGA
*
65238933 CATGTACGATGCGCATTTAATGGTAAACTCCACAGTTCCACAACCTCAATCTGCTCACCATCAAG
390 CATGTACGATGCGCATTTAATGGTAAACTCCACAGTTCCACAACCTCAATCTCCTCACCATCAAG
65238998 GTTCAAGTAAGCAATCTGCTCATAGAGTGACCATGTATAAAGTTAGAAAGTGTGACCCTTGTAGT
455 GTTCAAGTAAGCAATCTGCTCATAGAGTGACCATGTATAAAGTTAGAAAGTGTGACCCTTGTAGT
**
65239063 GTGCATTTTTTCTAACTTTTTCCTCAAGGTTTCTTATGTTCTCGATTTAGTCTGGGATCATGTTT
520 GTGCATTTTTTCTAACTTTTTCCTCAAGGTTTCTTATGTTCTCGATTTAGTCCAGGATCATGTTT
65239128 AAAATTTTTTAAGGCCTTGAGGGCTCGATTAAGGGATAATATGCATGTGTTTCAATGAATTAT
585 AAAATTTTTTAAGGCCTTGAGGGCTCGATTAAGGGATAATATGCATGTGTTTCAATGAATTAT
65239191 GCTATGATTTATCTAATGTTTGGAAATGAATTTTTTATGTTACGATTTTACGGTAATGCTCTGTA
1 GCTATGATTTATCTAATGTTTGGAAATGAATTTTTTATGTTACGATTTTACGGTAATGCTCTGTA
* * *
65239256 ACCCTATTTGAGTGACGAATACGGTTAGGGGTGTTACGTTTAGTGGTATCAGAGCAAAAATTTAG
66 ACCCTATTTGAGTGACGAATACGGTTAAGGGTGTTACATTTAGTGATATCAGAGCAAAAATTTAG
* * *
65239321 TCGATTCTCAGACTAAACTTAGCTTGGATAGGGTCTAGAAATACATGACACTTGACTAACCGGAG
131 TCGATTCTCAAACTAAACTTAGCATGGATAGAGTCTAGAAATACATGACACTTGACTAACCGGAG
* * * * *
65239386 ATTGTGTGATAGCTTTTGATTATTTTTGAAGTGTTCTTATATAGGTAAAAGATGTCGTCGTGTTC
196 ATAGTGTGATAGCTTTTGATTATCTTTGAAATGTTCTTATATAGGTAAAAGATGTCGTCGGGATC
* * *
65239451 TAATCAAGTAGGTTCTGATGAGGTAGAAAGTTTTATTCCACCTACTAACGAGGAAAGTACGCGGA
261 TAATCAAGTAGGTTCTAATGAGATAGAAAGTTTTATTCCACCTACAAACGAGGAAAGTACGCGGA
* * *
65239516 ATGAACCTGGACCTTAAGAATCTAGATAAGTAGCACCTAATTTATTTCTTCGTAT-AGTGCATGG
326 ATGAACCTGGACCGTAAGAATCTAGAGAAGTAGCACCTAATTTATTTCTTCGTATGA-TGCATGA
* * *
65239580 CATGTACGATGCGCATTTAATGGTAAACTCCACAGTTCCATATCTTCAATCTCCTCACCATCAAG
390 CATGTACGATGCGCATTTAATGGTAAACTCCACAGTTCCACAACCTCAATCTCCTCACCATCAAG
*
65239645 GTTCAAGTAAGCAATGTGCTCATAGAGTGACCATGTATAAAGTTAGAAAGTGTGACCCTTGTAGT
455 GTTCAAGTAAGCAATCTGCTCATAGAGTGACCATGTATAAAGTTAGAAAGTGTGACCCTTGTAGT
* *
65239710 GTGCCTTTTTTCTAACTTTTTCCTTAAGGTTT-TATATGTTCTCGATTTAGTCCAGGATCAT-TT
520 GTGCATTTTTTCTAACTTTTTCCTCAAGGTTTCT-TATGTTCTCGATTTAGTCCAGGATCATGTT
* *
65239773 TTAATTTTTTTAAGGCCTTGAGGGCTCGATTAAGGGATAATATGCATGTGTTTCAATGAATTAT
584 TAAAATTTTTTAAGGCCTTGAGGGCTCGATTAAGGGATAATATGCATGTGTTTCAATGAATTAT
* *
65239837 GCTATGATTTATCTAATGTTAGGAAATGAATTTTTTATGTTTCGATTTTACGGTAATGCTCTGTA
1 GCTATGATTTATCTAATGTTTGGAAATGAATTTTTTATGTTACGATTTTACGGTAATGCTCTGTA
** *
65239902 ACCCTATTTCGA-CAACAAATACTGGTTAAGGGTGTTACA
66 ACCCTATTT-GAGTGACGAATAC-GGTTAAGGGTGTTACA
65239941 ACCTTGCTGC
Statistics
Matches: 694, Mismatches: 51, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
646 145 0.21
647 547 0.79
648 2 0.00
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.35
Consensus pattern (647 bp):
GCTATGATTTATCTAATGTTTGGAAATGAATTTTTTATGTTACGATTTTACGGTAATGCTCTGTA
ACCCTATTTGAGTGACGAATACGGTTAAGGGTGTTACATTTAGTGATATCAGAGCAAAAATTTAG
TCGATTCTCAAACTAAACTTAGCATGGATAGAGTCTAGAAATACATGACACTTGACTAACCGGAG
ATAGTGTGATAGCTTTTGATTATCTTTGAAATGTTCTTATATAGGTAAAAGATGTCGTCGGGATC
TAATCAAGTAGGTTCTAATGAGATAGAAAGTTTTATTCCACCTACAAACGAGGAAAGTACGCGGA
ATGAACCTGGACCGTAAGAATCTAGAGAAGTAGCACCTAATTTATTTCTTCGTATGATGCATGAC
ATGTACGATGCGCATTTAATGGTAAACTCCACAGTTCCACAACCTCAATCTCCTCACCATCAAGG
TTCAAGTAAGCAATCTGCTCATAGAGTGACCATGTATAAAGTTAGAAAGTGTGACCCTTGTAGTG
TGCATTTTTTCTAACTTTTTCCTCAAGGTTTCTTATGTTCTCGATTTAGTCCAGGATCATGTTTA
AAATTTTTTAAGGCCTTGAGGGCTCGATTAAGGGATAATATGCATGTGTTTCAATGAATTAT
Found at i:65282297 original size:13 final size:13
Alignment explanation
Indices: 65282279--65282307 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
65282269 TGTGTCTTAT
65282279 ACGACTAAGTCAC
1 ACGACTAAGTCAC
65282292 ACGACTAAGTCAC
1 ACGACTAAGTCAC
65282305 ACG
1 ACG
65282308 CCCATGTGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.31, G:0.17, T:0.14
Consensus pattern (13 bp):
ACGACTAAGTCAC
Found at i:65282451 original size:21 final size:21
Alignment explanation
Indices: 65282413--65282452 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
65282403 GCTTAACAGG
*
65282413 TTCAAAACACGATCAAACACA
1 TTCAAAACACGATAAAACACA
* *
65282434 TTCAAAACATGCTAAAACA
1 TTCAAAACACGATAAAACA
65282453 ATCATCCTAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.53, C:0.25, G:0.05, T:0.17
Consensus pattern (21 bp):
TTCAAAACACGATAAAACACA
Found at i:65284389 original size:13 final size:13
Alignment explanation
Indices: 65284351--65284391 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
65284341 TCGTGCGTGA
*
65284351 CTTTCTTTTC-TT
1 CTTTTTTTTCTTT
65284363 CTTTCTTTTTCTTT
1 CTTT-TTTTTCTTT
65284377 CTTTTTTTTCTTT
1 CTTTTTTTTCTTT
65284390 CT
1 CT
65284392 AAGTTGTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 4 0.15
13 16 0.62
14 6 0.23
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (13 bp):
CTTTTTTTTCTTT
Found at i:65287048 original size:54 final size:54
Alignment explanation
Indices: 65286911--65287106 Score: 240
Period size: 57 Copynumber: 3.7 Consensus size: 54
65286901 ATACAAATTA
* * * *
65286911 CAGAAAATATTTCCTATTCACTCATCTTTTCTTGCAGGGAATTTTTACTGTTTTCAT
1 CAGAGAATATTTCCTGTTCACTCGTCTTTTCTTGCAGGGAATATTTACTG-TTT--T
*
65286968 CAGAGAATATTTCCTGTTCACTCGTCTTTTCTTGCAGGAAATATTTACTGTTTT
1 CAGAGAATATTTCCTGTTCACTCGTCTTTTCTTGCAGGGAATATTTACTGTTTT
* *
65287022 CAGAGAATATTTCTTGTTCACTCGTCTTTTCTTACAGGGAATATTT-C-G---T
1 CAGAGAATATTTCCTGTTCACTCGTCTTTTCTTGCAGGGAATATTTACTGTTTT
* * *
65287071 CAGCGAATATTTCATGTTCACTTGTCTTTTCTTGCA
1 CAGAGAATATTTCCTGTTCACTCGTCTTTTCTTGCA
65287107 TCATATTTTC
Statistics
Matches: 127, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
49 33 0.26
52 1 0.01
53 1 0.01
54 44 0.35
56 3 0.02
57 45 0.35
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.44
Consensus pattern (54 bp):
CAGAGAATATTTCCTGTTCACTCGTCTTTTCTTGCAGGGAATATTTACTGTTTT
Found at i:65287098 original size:49 final size:49
Alignment explanation
Indices: 65286962--65287103 Score: 176
Period size: 54 Copynumber: 2.8 Consensus size: 49
65286952 TTTTTACTGT
* * *
65286962 TTTCATCAGAGAATATTTCCTGTTCACTCGTCTTTTCTTGCAGGAAATA
1 TTTCGTCAGAGAATATTTCATGTTCACTCGTCTTTTCTTACAGGAAATA
* *
65287011 TTTACTGTTTTCAGAGAATATTTCTTGTTCACTCGTCTTTTCTTACAGGGAATA
1 TTT-C-G---TCAGAGAATATTTCATGTTCACTCGTCTTTTCTTACAGGAAATA
* *
65287065 TTTCGTCAGCGAATATTTCATGTTCACTTGTCTTTTCTT
1 TTTCGTCAGAGAATATTTCATGTTCACTCGTCTTTTCTT
65287104 GCATCATATT
Statistics
Matches: 81, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
49 34 0.42
50 1 0.01
52 1 0.01
53 1 0.01
54 44 0.54
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (49 bp):
TTTCGTCAGAGAATATTTCATGTTCACTCGTCTTTTCTTACAGGAAATA
Found at i:65290505 original size:35 final size:35
Alignment explanation
Indices: 65290459--65290525 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
65290449 TGTTTATGAC
65290459 AATATTTATTTTTATTAAATATCTTTGAATAGGAA
1 AATATTTATTTTTATTAAATATCTTTGAATAGGAA
65290494 AATATTTATTTTTATTAAATATCTTTGAATAG
1 AATATTTATTTTTATTAAATATCTTTGAATAG
65290526 ATACTTCAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (35 bp):
AATATTTATTTTTATTAAATATCTTTGAATAGGAA
Found at i:65294436 original size:35 final size:35
Alignment explanation
Indices: 65294390--65294456 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
65294380 ACTGAAGTAT
65294390 CTATTCAAAGATATTTAATAAAAATAAATATTTTC
1 CTATTCAAAGATATTTAATAAAAATAAATATTTTC
65294425 CTATTCAAAGATATTTAATAAAAATAAATATT
1 CTATTCAAAGATATTTAATAAAAATAAATATT
65294457 GTCATAAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.51, C:0.07, G:0.03, T:0.39
Consensus pattern (35 bp):
CTATTCAAAGATATTTAATAAAAATAAATATTTTC
Found at i:65294962 original size:35 final size:35
Alignment explanation
Indices: 65294916--65294982 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
65294906 TGTTTATGAC
65294916 AATATTTATTTTTATTAAATATCTTTGAATAGGAA
1 AATATTTATTTTTATTAAATATCTTTGAATAGGAA
65294951 AATATTTATTTTTATTAAATATCTTTGAATAG
1 AATATTTATTTTTATTAAATATCTTTGAATAG
65294983 ATACTTCAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (35 bp):
AATATTTATTTTTATTAAATATCTTTGAATAGGAA
Found at i:65301228 original size:27 final size:27
Alignment explanation
Indices: 65301197--65301374 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
65301187 TAAATTGTAC
65301197 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
65301224 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
65301250 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
65301278 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
65301306 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
65301333 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
65301360 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
65301375 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:65301311 original size:82 final size:81
Alignment explanation
Indices: 65301198--65301353 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
65301188 AAATTGTACA
* *
65301198 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
65301262 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
65301279 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
65301344 TGCGAGTTGA
65 TGCGAATTGA
65301354 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:65301365 original size:82 final size:81
Alignment explanation
Indices: 65301194--65301374 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
65301184 GATTAAATTG
* *
65301194 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
65301259 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
65301275 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
65301339 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
65301357 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
65301375 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:65303494 original size:28 final size:28
Alignment explanation
Indices: 65303448--65303514 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
65303438 AAGTCCGCTG
**
65303448 AGGACTGTCTTATGTGGAAAGCCCGCCA
1 AGGACTGTCTTATAAGGAAAGCCCGCCA
***
65303476 AGGACTGTCTTATAAGGAAAGTTTGCCA
1 AGGACTGTCTTATAAGGAAAGCCCGCCA
*
65303504 AGGACTATCTT
1 AGGACTGTCTT
65303515 GAAGATGAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (28 bp):
AGGACTGTCTTATAAGGAAAGCCCGCCA
Found at i:65306065 original size:15 final size:15
Alignment explanation
Indices: 65306041--65306072 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
65306031 TATGCATGTA
*
65306041 AAATATAAAAGACAT
1 AAATACAAAAGACAT
65306056 AAATACAAAAGACAT
1 AAATACAAAAGACAT
65306071 AA
1 AA
65306073 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:65316042 original size:13 final size:11
Alignment explanation
Indices: 65316015--65316057 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
65316005 AGTTAAAAAT
65316015 TATTTTATTAA
1 TATTTTATTAA
65316026 TATTTTACTTAA
1 TATTTTA-TTAA
*
65316038 -ATATTTATTAT
1 TAT-TTTATTAA
65316049 TATTTTATT
1 TATTTTATT
65316058 TAGAAAATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:65319598 original size:8 final size:9
Alignment explanation
Indices: 65319573--65319597 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
65319563 TAAAATTGAA
65319573 TATAAAAAT
1 TATAAAAAT
65319582 TATAAAAAT
1 TATAAAAAT
65319591 TATAAAA
1 TATAAAA
65319598 TCTATCAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
TATAAAAAT
Found at i:65325395 original size:36 final size:37
Alignment explanation
Indices: 65325355--65325432 Score: 140
Period size: 36 Copynumber: 2.1 Consensus size: 37
65325345 ATTTAAATTC
*
65325355 ATTTTTATTTATATAATTTTCAAATAAATAT-TTTTA
1 ATTTTTATTTACATAATTTTCAAATAAATATGTTTTA
65325391 ATTTTTATTTACATAATTTTCAAATAAATATGTTTTA
1 ATTTTTATTTACATAATTTTCAAATAAATATGTTTTA
65325428 ATTTT
1 ATTTT
65325433 AAAAATAAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
36 30 0.75
37 10 0.25
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (37 bp):
ATTTTTATTTACATAATTTTCAAATAAATATGTTTTA
Found at i:65325654 original size:21 final size:22
Alignment explanation
Indices: 65325616--65325670 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
65325606 CCAGCCCATT
* **
65325616 TTTTAATAAATACCAAAAATTTA
1 TTTTAA-AAATACAAAAAAAGTA
65325639 TTTTAAAAAT-CAAAAAAAGTA
1 TTTTAAAAATACAAAAAAAGTA
65325660 TTTTAAAAATA
1 TTTTAAAAATA
65325671 TTTTAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 18 0.64
22 4 0.14
23 6 0.21
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.36
Consensus pattern (22 bp):
TTTTAAAAATACAAAAAAAGTA
Found at i:65325684 original size:17 final size:17
Alignment explanation
Indices: 65325662--65325710 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
65325652 AAAAAGTATT
65325662 TTAAAAATATTTTAAAA
1 TTAAAAATATTTTAAAA
* *
65325679 TTAAAAAAATTTAAAAA
1 TTAAAAATATTTTAAAA
* *
65325696 ATAAATATATATTTA
1 TTAAAAATAT-TTTA
65325711 TTATATAGGG
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 22 0.88
18 3 0.12
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAAAAATATTTTAAAA
Found at i:65338349 original size:9 final size:9
Alignment explanation
Indices: 65338333--65338393 Score: 95
Period size: 9 Copynumber: 6.8 Consensus size: 9
65338323 GGTATTTTTC
65338333 GGTAATTCG
1 GGTAATTCG
*
65338342 GTTAATTCG
1 GGTAATTCG
*
65338351 GTTAATTCG
1 GGTAATTCG
*
65338360 GTTAATTCG
1 GGTAATTCG
65338369 GGTAATTCG
1 GGTAATTCG
65338378 GGTAATTCG
1 GGTAATTCG
65338387 GGTAATT
1 GGTAATT
65338394 TTTAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 50 1.00
ACGTcount: A:0.23, C:0.10, G:0.28, T:0.39
Consensus pattern (9 bp):
GGTAATTCG
Found at i:65338570 original size:12 final size:12
Alignment explanation
Indices: 65338553--65338577 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
65338543 AGTAATTTCG
65338553 GGTCGGTTAACC
1 GGTCGGTTAACC
65338565 GGTCGGTTAACC
1 GGTCGGTTAACC
65338577 G
1 G
65338578 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:65339345 original size:6 final size:6
Alignment explanation
Indices: 65339334--65339364 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
65339324 AGCTACTCCC
*
65339334 TATCTT TATCTT GATCTT TATCTT TATCTT T
1 TATCTT TATCTT TATCTT TATCTT TATCTT T
65339365 TTCTCTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.16, C:0.16, G:0.03, T:0.65
Consensus pattern (6 bp):
TATCTT
Found at i:65352327 original size:230 final size:223
Alignment explanation
Indices: 65351899--65352378 Score: 529
Period size: 230 Copynumber: 2.1 Consensus size: 223
65351889 AAAAGAAATA
* * * *
65351899 TGACAAGTGAAACTATA-TATATGGTACATATATATTTAATGTGTGAATGATTTTTGTGGATCAC
1 TGACAAGTGAAACTATATTATATGGCACATATATATTTAATGTATAAATGATTTTTATGGATCAC
*
65351963 ATTAAATGCAATGTTTTATTGTAAAAACGAAAAAAAAAACGTTTTATTCCTCAAAATGTTTGAAT
66 ATTAAATGCAAAGTTTTATTGTAAAAACG--AAAAAAAACGTTTTATTCCTCAAAATGTTTGAAT
* *** * *
65352028 ATATATAGGCAACAATTATAATAATAATAAAAATCCCTTTGGATATCATTCGCTTAATTTTTGTA
129 ATATATA-GCAACAATTATAATAATAAAAAAAATCCCTTCCAATATCATTCCCTTAATTTTTCTA
65352093 TATTAAAAATTATGTGGCAAACTTCAATGTT
193 TATTAAAAATTATGTGGCAAACTTCAATGTT
* * * * * *
65352124 TGACAAATGAAACTATATTTATATGGCATATGTATATTTAATTTATAAATGTTTTTTATGGGTCA
1 TGACAAGTGAAACTATA-TTATATGGCACATATATATTTAATGTATAAATGATTTTTATGGATCA
* * * * *
65352189 CATTAAGTGCAAAGTTTTCA-TGTAAAAATG-GAAAAAATGTTTTATTCCTCGAAATGTTTGAAT
65 CATTAAATGCAAAGTTTT-ATTGTAAAAACGAAAAAAAACGTTTTATTCCTCAAAATGTTTGAAT
*
65352252 ATTATATA-CAA-TATTATGACAGTAATTATTAAAAAAAAATCCCTTCCAATATCATTCCCTTAA
129 A-TATATAGCAACAATTAT-A-A-T-A--A-T-AAAAAAAATCCCTTCCAATATCATTCCCTTAA
* * * *
65352315 TTTTTCTATATTAAAATTTATGTGGTAAGCTTCGATGTT
185 TTTTTCTATATTAAAAATTATGTGGCAAACTTCAATGTT
* *
65352354 TGACAAGTGGAATTATATCTATATG
1 TGACAAGTGAAACTATAT-TATATG
65352379 ATATAAGTGC
Statistics
Matches: 212, Mismatches: 30, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
222 5 0.02
223 4 0.02
224 32 0.15
225 23 0.11
226 1 0.00
227 62 0.29
228 2 0.01
229 2 0.01
230 81 0.38
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (223 bp):
TGACAAGTGAAACTATATTATATGGCACATATATATTTAATGTATAAATGATTTTTATGGATCAC
ATTAAATGCAAAGTTTTATTGTAAAAACGAAAAAAAACGTTTTATTCCTCAAAATGTTTGAATAT
ATATAGCAACAATTATAATAATAAAAAAAATCCCTTCCAATATCATTCCCTTAATTTTTCTATAT
TAAAAATTATGTGGCAAACTTCAATGTT
Found at i:65352625 original size:20 final size:20
Alignment explanation
Indices: 65352602--65352648 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
65352592 AATAAACACC
*
65352602 AAAAATTTATTTTAAAAATA
1 AAAAATTCATTTTAAAAATA
** *
65352622 AAAAAAGCATTTTAAAATTA
1 AAAAATTCATTTTAAAAATA
65352642 AAAAATT
1 AAAAATT
65352649 AAAAAATATA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (20 bp):
AAAAATTCATTTTAAAAATA
Found at i:65353438 original size:13 final size:13
Alignment explanation
Indices: 65353408--65353440 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
65353398 TATCCTCAAT
*
65353408 TAAATTATTTTTA
1 TAAAATATTTTTA
65353421 -AAAATATTTTTA
1 TAAAATATTTTTA
65353433 TAAAATAT
1 TAAAATAT
65353441 AAATATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TAAAATATTTTTA
Found at i:65353576 original size:6 final size:6
Alignment explanation
Indices: 65353565--65353611 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
65353555 ATTCAATAAT
* *
65353565 ATATTA ATATTA ATATTA ATATTA AAATAA ATA-TA ATATTA TATATT
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA -ATATT
65353612 TTAATATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
5 4 0.11
6 26 0.74
7 5 0.14
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
ATATTA
Found at i:65364538 original size:52 final size:53
Alignment explanation
Indices: 65364461--65364644 Score: 169
Period size: 52 Copynumber: 3.3 Consensus size: 53
65364451 CTATTTCAAA
* * *
65364461 AATAATATTATT-CTAATATATTTAATATTAAATTAAATTTAATACTTATCTT
1 AATAATATTATTATTAATATATTTAATATTAAATTTAATTTAATATTTATCTT
* * *
65364513 AATAATATT-TTATTAAT-TATCTTAATATTAGATTTAACTTAATGTTTATCTTGT
1 AATAATATTATTATTAATATAT-TTAATATTAAATTTAATTTAATATTTATC-T-T
*
65364567 AGATAAATATTCAATTAATTTAATAATATTTAATATTAAATTTAATCTAATATTTATCTT
1 A-AT-AATATT--ATT-A-TTAAT-ATATTTAATATTAAATTTAATTTAATATTTATCTT
*
65364627 GATAAGTATTA-TATTAAT
1 AATAA-TATTATTATTAAT
65364645 TTAATATTAA
Statistics
Matches: 107, Mismatches: 11, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
51 5 0.05
52 37 0.35
53 1 0.01
54 7 0.07
55 3 0.03
56 7 0.07
57 1 0.01
58 2 0.02
59 8 0.07
60 2 0.02
61 6 0.06
62 25 0.23
63 3 0.03
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (53 bp):
AATAATATTATTATTAATATATTTAATATTAAATTTAATTTAATATTTATCTT
Found at i:65364604 original size:62 final size:59
Alignment explanation
Indices: 65364534--65364650 Score: 148
Period size: 62 Copynumber: 1.9 Consensus size: 59
65364524 ATTAATTATC
* *
65364534 TTAATATTAGATTTAA-CTTAATGTTTATCTTGTAGATAAATATTCA-ATTAATTTAATAATAT
1 TTAATATTAAATTTAATC-TAATATTTATC-T-T-GATAAATATT-ATATTAATTTAATAATAT
*
65364596 TTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
65364651 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
58 1 0.02
59 21 0.42
60 1 0.02
61 1 0.02
62 25 0.50
63 1 0.02
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.50
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAATAT
Found at i:65369696 original size:32 final size:32
Alignment explanation
Indices: 65369655--65369719 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 32
65369645 GTTAAGTTAG
*
65369655 TTAATATTGTAGCTAA-GTTGTATTTATATTTC
1 TTAATATTGTAGCTAAGGTT-TATTTACATTTC
65369687 TTAATATTGTAGCTAAGGTTTATTTACATTTC
1 TTAATATTGTAGCTAAGGTTTATTTACATTTC
65369719 T
1 T
65369720 AGTCCCTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 28 0.90
33 3 0.10
ACGTcount: A:0.28, C:0.08, G:0.12, T:0.52
Consensus pattern (32 bp):
TTAATATTGTAGCTAAGGTTTATTTACATTTC
Found at i:65371613 original size:18 final size:18
Alignment explanation
Indices: 65371590--65371626 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
65371580 TTTTTATGTG
* *
65371590 TGTTTATTTTTGTTTTTA
1 TGTTTATTTGTGTGTTTA
65371608 TGTTTATTTGTGTGTTTA
1 TGTTTATTTGTGTGTTTA
65371626 T
1 T
65371627 TTTTTTTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.00, G:0.16, T:0.73
Consensus pattern (18 bp):
TGTTTATTTGTGTGTTTA
Found at i:65371712 original size:41 final size:42
Alignment explanation
Indices: 65371656--65371739 Score: 127
Period size: 41 Copynumber: 2.0 Consensus size: 42
65371646 AAAAAAAAAA
* *
65371656 TCAAAAATTCCAAAAATATTT-TTCGTTTTTATTTTTAATTTT
1 TCAAAAATTCCAAAAATATTTCTT-GCTTTCATTTTTAATTTT
65371698 TCAAAAA-TCCAAAAATATTTCTTGCTTTCATTTTTAATTTT
1 TCAAAAATTCCAAAAATATTTCTTGCTTTCATTTTTAATTTT
65371739 T
1 T
65371740 GTTATTGCAT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
41 30 0.77
42 9 0.23
ACGTcount: A:0.33, C:0.12, G:0.02, T:0.52
Consensus pattern (42 bp):
TCAAAAATTCCAAAAATATTTCTTGCTTTCATTTTTAATTTT
Found at i:65383179 original size:19 final size:21
Alignment explanation
Indices: 65383134--65383179 Score: 64
Period size: 19 Copynumber: 2.4 Consensus size: 21
65383124 ACGAAAAACC
65383134 AAATTAA-ATTAAATTAATCA
1 AAATTAACATTAAATTAATCA
65383154 AAA-TAACA-TAAATTAAT-A
1 AAATTAACATTAAATTAATCA
65383172 AAATTAAC
1 AAATTAAC
65383180 TAAGACAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 4 0.17
19 16 0.67
20 4 0.17
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (21 bp):
AAATTAACATTAAATTAATCA
Found at i:65384590 original size:10 final size:10
Alignment explanation
Indices: 65384572--65384602 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
65384562 TTACCTAAAA
*
65384572 TCAAACCATT
1 TCAATCCATT
65384582 TCAATCCATT
1 TCAATCCATT
65384592 TCAATCCATT
1 TCAATCCATT
65384602 T
1 T
65384603 TATGCATAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.32, C:0.29, G:0.00, T:0.39
Consensus pattern (10 bp):
TCAATCCATT
Found at i:65388479 original size:27 final size:27
Alignment explanation
Indices: 65388449--65388626 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
65388439 ATATTGAGTC
* * * *
65388449 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
65388476 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65388503 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
65388531 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
65388558 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
65388585 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
65388612 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65388627 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:65388588 original size:82 final size:81
Alignment explanation
Indices: 65388470--65388625 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
65388460 TGCTATATAA
* *
65388470 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
65388535 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
65388552 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
65388616 CACTTAGTGC
65 CACTTAGTGC
65388626 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:65394243 original size:8 final size:8
Alignment explanation
Indices: 65394232--65394262 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
65394222 TAAATAATGA
65394232 AAATAAAC
1 AAATAAAC
65394240 AAATAAAC
1 AAATAAAC
65394248 AAATAAAC
1 AAATAAAC
65394256 AAATAAA
1 AAATAAA
65394263 ATAAATCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.77, C:0.10, G:0.00, T:0.13
Consensus pattern (8 bp):
AAATAAAC
Found at i:65396605 original size:40 final size:40
Alignment explanation
Indices: 65396554--65396710 Score: 242
Period size: 40 Copynumber: 3.9 Consensus size: 40
65396544 ATAACCGCAA
* * * *
65396554 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
65396594 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
65396634 GCATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
65396674 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
65396711 ATGCTCATGC
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:65396661 original size:80 final size:80
Alignment explanation
Indices: 65396558--65396710 Score: 270
Period size: 80 Copynumber: 1.9 Consensus size: 80
65396548 CCGCAAGCAC
* *
65396558 AATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGA
1 AATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGA
65396623 TATATCAACTTGCAT
66 TATATCAACTTGCAT
* *
65396638 AATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGA
1 AATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGA
65396703 TATATCAA
66 TATATCAA
65396711 ATGCTCATGC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 69 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (80 bp):
AATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGA
TATATCAACTTGCAT
Found at i:65403707 original size:58 final size:58
Alignment explanation
Indices: 65403617--65403730 Score: 219
Period size: 58 Copynumber: 2.0 Consensus size: 58
65403607 ACCATATATT
*
65403617 TATAGATTCCTCTCTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGTATTGGAGTG
1 TATAGATTCCTCTCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGTATTGGAGTG
65403675 TATAGATTCCTCTCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGTATTGGAG
1 TATAGATTCCTCTCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGTATTGGAG
65403731 CCCTGTACAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (58 bp):
TATAGATTCCTCTCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGTATTGGAGTG
Found at i:65415423 original size:27 final size:27
Alignment explanation
Indices: 65415393--65415447 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
65415383 AATATAATAC
* *
65415393 AATTA-TAAAATAATTAAATTTTACTTA
1 AATTATTAAAAT-ATCAAATTTTAATTA
*
65415420 AATTATTAACATATCAAATTTTAATTA
1 AATTATTAAAATATCAAATTTTAATTA
65415447 A
1 A
65415448 TTTTATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (27 bp):
AATTATTAAAATATCAAATTTTAATTA
Found at i:65418567 original size:35 final size:35
Alignment explanation
Indices: 65418501--65418588 Score: 117
Period size: 35 Copynumber: 2.5 Consensus size: 35
65418491 GTACACGGTT
* *
65418501 AACCATCCAGCACACCAG-ATGCTCAAGTGAGCCA
1 AACCAACCAACACACCAGAATGCTCAAGTGAGCCA
* *
65418535 GACCAACCAACACACCAGAATGCTCGTA-TGAGCCA
1 AACCAACCAACACACCAGAATGCTC-AAGTGAGCCA
65418570 AACCAACCAACACACCAGA
1 AACCAACCAACACACCAGA
65418589 GTACACTATA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
34 15 0.32
35 31 0.66
36 1 0.02
ACGTcount: A:0.40, C:0.36, G:0.15, T:0.09
Consensus pattern (35 bp):
AACCAACCAACACACCAGAATGCTCAAGTGAGCCA
Found at i:65421940 original size:10 final size:10
Alignment explanation
Indices: 65421925--65421955 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
65421915 TAATGTGATT
65421925 TGAATTGAAA
1 TGAATTGAAA
65421935 TGAATTGAAA
1 TGAATTGAAA
65421945 TGAATTGAAA
1 TGAATTGAAA
65421955 T
1 T
65421956 AGACAATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.32
Consensus pattern (10 bp):
TGAATTGAAA
Found at i:65422169 original size:13 final size:13
Alignment explanation
Indices: 65422151--65422176 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65422141 CCCATGTGAA
65422151 CTTAGTAAAAGGT
1 CTTAGTAAAAGGT
65422164 CTTAGTAAAAGGT
1 CTTAGTAAAAGGT
65422177 TAGAGTACGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
CTTAGTAAAAGGT
Found at i:65425619 original size:31 final size:31
Alignment explanation
Indices: 65425557--65425619 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 31
65425547 TTTTTTAAAA
65425557 TTTAAATATATATTTTATATTTTTAAAATTT
1 TTTAAATATATATTTTATATTTTTAAAATTT
* *
65425588 TTTAGAATATCTA-TTTA-ATTTTTAAAAATT
1 TTTA-AATATATATTTTATATTTTTAAAATTT
65425618 TT
1 TT
65425620 AACATTAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 14 0.48
31 8 0.28
32 7 0.24
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (31 bp):
TTTAAATATATATTTTATATTTTTAAAATTT
Found at i:65432122 original size:23 final size:23
Alignment explanation
Indices: 65432092--65432206 Score: 149
Period size: 23 Copynumber: 4.9 Consensus size: 23
65432082 CGTCATTGGA
65432092 AAAGGATGAATTGACGGAAATGT
1 AAAGGATGAATTGACGGAAATGT
*
65432115 AAAGGATGAATTGACGAAAAATGT
1 AAAGGATGAATTGACG-GAAATGT
* * * *
65432139 AAAGGAGGAACTAACGAAAATGT
1 AAAGGATGAATTGACGGAAATGT
*
65432162 AAAGGATGAATTGACGGTAATGT
1 AAAGGATGAATTGACGGAAATGT
*
65432185 AAAGGATGAATTGGCGGCAAAT
1 AAAGGATGAATTGACGG-AAAT
65432207 TATCTGAGTA
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
23 57 0.72
24 22 0.28
ACGTcount: A:0.45, C:0.06, G:0.29, T:0.20
Consensus pattern (23 bp):
AAAGGATGAATTGACGGAAATGT
Found at i:65439697 original size:23 final size:23
Alignment explanation
Indices: 65439639--65439702 Score: 101
Period size: 23 Copynumber: 2.7 Consensus size: 23
65439629 ATTGGGAAAT
*
65439639 GATGAATTGACGAAAATGTAAAG
1 GATGAATTGACGGAAATGTAAAG
*
65439662 GATGAATTGACGGTAATGTAAAG
1 GATGAATTGACGGAAATGTAAAG
65439685 GATGAATTGACGGCAAAT
1 GATGAATTGACGG-AAAT
65439703 TTTCTAAGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
23 34 0.92
24 3 0.08
ACGTcount: A:0.42, C:0.06, G:0.28, T:0.23
Consensus pattern (23 bp):
GATGAATTGACGGAAATGTAAAG
Found at i:65441136 original size:29 final size:29
Alignment explanation
Indices: 65441094--65441152 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
65441084 GGGTTATGGG
*
65441094 TGTAAAGTCTGGTAATGCTTCGTAAAGTC
1 TGTAAAGTCTGGTAATGCTTCATAAAGTC
65441123 TGTAAAGTCTGGTAATGCTTCATAAAGTC
1 TGTAAAGTCTGGTAATGCTTCATAAAGTC
65441152 T
1 T
65441153 ATAATAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.36
Consensus pattern (29 bp):
TGTAAAGTCTGGTAATGCTTCATAAAGTC
Found at i:65449909 original size:23 final size:25
Alignment explanation
Indices: 65449881--65449927 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
65449871 TTTCTAATCT
*
65449881 CTTCTT-TACTTGA-AATTTTACAC
1 CTTCTTCTACTAGATAATTTTACAC
65449904 CTTCTTGCTACTAGATAATTTTAC
1 CTTCTT-CTACTAGATAATTTTAC
65449928 TTTTCAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
25 6 0.30
26 8 0.40
ACGTcount: A:0.26, C:0.21, G:0.06, T:0.47
Consensus pattern (25 bp):
CTTCTTCTACTAGATAATTTTACAC
Found at i:65454381 original size:25 final size:25
Alignment explanation
Indices: 65454351--65454469 Score: 89
Period size: 25 Copynumber: 4.8 Consensus size: 25
65454341 GCTGTCTCTC
*
65454351 GAGCCATATAACAGGAAGCTCATAT
1 GAGCCATATAACAGGAAGCTCATAA
* * * **
65454376 GAGCCATGTAACGGGAAGCTTATCC
1 GAGCCATATAACAGGAAGCTCATAA
* ** **
65454401 GGGCTGTATAATGGGAAGCTCATAA
1 GAGCCATATAACAGGAAGCTCATAA
* **
65454426 GAGCCATA-ATCAGGAAGCTCATGG
1 GAGCCATATAACAGGAAGCTCATAA
*
65454450 GAGCCA-ATAACAGGTAGCTC
1 GAGCCATATAACAGGAAGCTC
65454470 TGAAGAGTCA
Statistics
Matches: 70, Mismatches: 23, Indels: 3
0.73 0.24 0.03
Matches are distributed among these distances:
23 1 0.01
24 27 0.39
25 42 0.60
ACGTcount: A:0.34, C:0.20, G:0.27, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTCATAA
Found at i:65454611 original size:26 final size:27
Alignment explanation
Indices: 65454531--65454614 Score: 77
Period size: 26 Copynumber: 3.3 Consensus size: 27
65454521 AGCGAGCCAT
* *
65454531 ATCGGGAAACTT-CGGAGAGCCAT-TA
1 ATCGGGAAGCTTACGAAGAGCCATATA
* * * * *
65454556 ATCTGGAAGCTCACAAAGGGCC-TTTA
1 ATCGGGAAGCTTACGAAGAGCCATATA
65454582 ATCGGGAAGCTTACGAAGAGCCATAT-
1 ATCGGGAAGCTTACGAAGAGCCATATA
65454608 ATCGGGA
1 ATCGGGA
65454615 CACTCATAAG
Statistics
Matches: 45, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
25 10 0.22
26 33 0.73
27 2 0.04
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.20
Consensus pattern (27 bp):
ATCGGGAAGCTTACGAAGAGCCATATA
Found at i:65458008 original size:31 final size:31
Alignment explanation
Indices: 65457970--65458032 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
65457960 CTTGGATATC
65457970 TCCTTGTACAGGGCTCCAATACTGATGCCGT
1 TCCTTGTACAGGGCTCCAATACTGATGCCGT
65458001 TCCTTGTACAGGGCTCCAATACTGATGCCGT
1 TCCTTGTACAGGGCTCCAATACTGATGCCGT
65458032 T
1 T
65458033 TGTTTCTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.30
Consensus pattern (31 bp):
TCCTTGTACAGGGCTCCAATACTGATGCCGT
Found at i:65465433 original size:59 final size:59
Alignment explanation
Indices: 65465341--65465461 Score: 181
Period size: 59 Copynumber: 2.1 Consensus size: 59
65465331 ATTATCTCTG
* *
65465341 GTTAATTTATAATGAATTTCCAAAGTCGGAACAGG-GAATCCAGAAACCGTTCTGGCCCT
1 GTTAATTTATAATAAATTTCCAAAGTCGAAACAGGAG-ATCCAGAAACCGTTCTGGCCCT
** *
65465400 GTTAATTTATGGTAAATTTTCAAAGTCGAAACAGGAGATCCAGAAACCGTTCTGGCCCT
1 GTTAATTTATAATAAATTTCCAAAGTCGAAACAGGAGATCCAGAAACCGTTCTGGCCCT
65465459 GTT
1 GTT
65465462 TCACGAGAAC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 55 0.98
60 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (59 bp):
GTTAATTTATAATAAATTTCCAAAGTCGAAACAGGAGATCCAGAAACCGTTCTGGCCCT
Found at i:65466446 original size:40 final size:40
Alignment explanation
Indices: 65466379--65466575 Score: 331
Period size: 40 Copynumber: 4.9 Consensus size: 40
65466369 ATAACCGCAA
* * * *
65466379 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
65466419 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
65466459 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
65466499 GCACAAATGCCTTCAGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
65466539 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAA
65466576 ATGCTCATGC
Statistics
Matches: 147, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 147 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:65469182 original size:39 final size:40
Alignment explanation
Indices: 65469065--65469287 Score: 239
Period size: 39 Copynumber: 5.7 Consensus size: 40
65469055 GCTCCTCGTT
* *
65469065 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCAGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
65469105 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCAGGACTTAGCCCGGAATTAGTATCTCGCA
65469145 CAAATGCCTTCAGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCAGGACTTAGCCCGGAATTAGTATCTCGCA
* *
65469184 CAAATGCCTTC-GGGCTTAGCCCGGAATTAGTATCTTGCA
1 CAAATGCCTTCAGGACTTAGCCCGGAATTAGTATCTCGCA
* *
65469223 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCAGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
65469264 C-AA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCAGGACTTAGCCCGGA
65469288 CATCATTCAA
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.01
39 87 0.54
40 62 0.38
41 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCAGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:65469242 original size:79 final size:81
Alignment explanation
Indices: 65469065--65469287 Score: 248
Period size: 79 Copynumber: 2.8 Consensus size: 81
65469055 GCTCCTCGTT
* *
65469065 CAAATGCCTTCAGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCAGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
*
65469129 GATTTAGTAACTCGCA
66 GAATTAGTAACTCGCA
*
65469145 CAAATGCCTTCAGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCC
1 CAAATGCCTTCAGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
* *
65469206 GGAATTAGTATCTTGCA
65 GGAATTAGTAACTCGCA
* * * * * *
65469223 CAAATGCCTTC-GGATCTTAGTCCGG-ATATTGTCACTTAGCAC-AA-GCCTTCAGGACTTAGCC
1 CAAATGCCTTCAGGA-CTTAGCCCGGAATATAGT-AATTCGCACAAATGCCTTCGGGACTTAACC
65469284 CGGA
64 CGGA
65469288 CATCATTCAA
Statistics
Matches: 124, Mismatches: 11, Indels: 17
0.82 0.07 0.11
Matches are distributed among these distances:
77 2 0.02
78 44 0.35
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCAGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
GAATTAGTAACTCGCA
Found at i:65473115 original size:22 final size:22
Alignment explanation
Indices: 65473047--65473115 Score: 57
Period size: 22 Copynumber: 3.0 Consensus size: 22
65473037 TGTGGACAAG
**
65473047 CCACCACATAGATACCAATGAA
1 CCACCACATAGATACTGATGAA
* * *
65473069 CGATCACATAGCACATCATGGATGAA
1 CCACCACATAG-ATA-C-T-GATGAA
65473095 CCACCACATAGATACTGATGA
1 CCACCACATAGATACTGATGA
65473116 GCTGGCATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
22 14 0.40
23 3 0.09
24 2 0.06
25 2 0.06
26 14 0.40
ACGTcount: A:0.41, C:0.28, G:0.14, T:0.17
Consensus pattern (22 bp):
CCACCACATAGATACTGATGAA
Found at i:65473273 original size:16 final size:17
Alignment explanation
Indices: 65473248--65473280 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
65473238 CATTTAAACA
65473248 CATATGTTTCAC-TATT
1 CATATGTTTCACATATT
*
65473264 CATATTTTTCACATATT
1 CATATGTTTCACATATT
65473281 TATGCTCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.27, C:0.18, G:0.03, T:0.52
Consensus pattern (17 bp):
CATATGTTTCACATATT
Found at i:65477106 original size:28 final size:28
Alignment explanation
Indices: 65477074--65477129 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
65477064 TATAATAGCC
65477074 AGCAAGTCCGAGAAAACTCTGAATTTCA
1 AGCAAGTCCGAGAAAACTCTGAATTTCA
*
65477102 AGCAAGTCTGAGAAAACTCTGAATTTCA
1 AGCAAGTCCGAGAAAACTCTGAATTTCA
65477130 CTAACATTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (28 bp):
AGCAAGTCCGAGAAAACTCTGAATTTCA
Found at i:65488430 original size:51 final size:50
Alignment explanation
Indices: 65488354--65488474 Score: 118
Period size: 51 Copynumber: 2.4 Consensus size: 50
65488344 ATAGGTCGCC
* * * * *
65488354 TGTGTAGTACGATGTGCATGCTACTATGCGTACCAGATAGT-TTCGATCACA
1 TGTGTAGTACTATGTGCA-GATACTACGCGTACCAAATAGTAAT-GATCACA
* * * * *
65488405 TGTGTAGTACTATGTGCAGAATACTACGTGTATCAAATGGTAATGGTCGCA
1 TGTGTAGTACTATGTGCAG-ATACTACGCGTACCAAATAGTAATGATCACA
65488456 TGTGTAGTACTATGTGCAG
1 TGTGTAGTACTATGTGCAG
65488475 GCTACTCTGT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
50 1 0.02
51 56 0.97
52 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGATACTACGCGTACCAAATAGTAATGATCACA
Found at i:65499296 original size:47 final size:47
Alignment explanation
Indices: 65499242--65499331 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 47
65499232 GATGATTGGA
* * * *
65499242 ACCTCTTTGTCTGCTTCAAAGTCTAGAATCATAAAGTCAGCAGTAGC
1 ACCTCTTTATCTACTTCAAAGTCTAGAATAACAAAGTCAGCAGTAGC
*
65499289 ACCTCTTTATCTACTTCAATGTCTAGAATAACAAAGTCAGCAG
1 ACCTCTTTATCTACTTCAAAGTCTAGAATAACAAAGTCAGCAG
65499332 GAAAGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.30
Consensus pattern (47 bp):
ACCTCTTTATCTACTTCAAAGTCTAGAATAACAAAGTCAGCAGTAGC
Found at i:65503573 original size:20 final size:20
Alignment explanation
Indices: 65503548--65503586 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
65503538 TTACTTCTTC
65503548 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
65503568 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
65503587 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:65503906 original size:50 final size:50
Alignment explanation
Indices: 65503796--65504030 Score: 186
Period size: 50 Copynumber: 4.6 Consensus size: 50
65503786 ACATGCTAAA
* ** * * * *
65503796 GCCATATCCCAGACATGGTCTTACATAGGATGTTTCCTGA--ACTACCAAT
1 GCCATATCCCAGACATGGTCTTACATGGGACCTCTCAT-ATCAGTGCCAAT
* ** * *
65503845 GCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCAT
1 GCCATATCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAAT
* * * * * *
65503895 GCCATGTCCCAGACATGGTTTTACAGGGGACCTCTCATCTCAGTGCTAAC
1 GCCATATCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAAT
* * *
65503945 GCCATATCCCAAACATGGTCTTACATGGGACCTCTCATAACCTCAATAATGTCAAT
1 GCCATATCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---AGTGCCAAT
* *
65504001 GCCATGTCCCAGACATGGTCTTACTTGGGA
1 GCCATATCCCAGACATGGTCTTACATGGGA
65504031 TCTCATTCCC
Statistics
Matches: 145, Mismatches: 33, Indels: 9
0.78 0.18 0.05
Matches are distributed among these distances:
48 1 0.01
49 32 0.22
50 78 0.54
53 2 0.01
56 32 0.22
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (50 bp):
GCCATATCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCCAAT
Found at i:65507136 original size:29 final size:30
Alignment explanation
Indices: 65507078--65507136 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
65507068 CTGCCTTAAA
* *
65507078 AATATTTACAAAAAGAGACAGCTAATTTTT
1 AATATTTACAAAAAGAGACAACTAAATTTT
*
65507108 AATATTTACAAAAAGA-ATAACTAAATTTT
1 AATATTTACAAAAAGAGACAACTAAATTTT
65507137 GCAAATAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.51, C:0.08, G:0.07, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACAACTAAATTTT
Found at i:65515920 original size:47 final size:47
Alignment explanation
Indices: 65515846--65516050 Score: 270
Period size: 47 Copynumber: 4.3 Consensus size: 47
65515836 CCCTTCGGGA
* * *
65515846 CTTATCACATTTATACACT-TCCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
65515893 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
65515940 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
65515987 CTTATCACGCATATATATACT-TTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
65516036 CCTATCACATATATA
1 CTTATCACATATATA
65516051 TACTTGTACA
Statistics
Matches: 140, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
46 1 0.01
47 98 0.70
49 40 0.29
50 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:65516035 original size:96 final size:94
Alignment explanation
Indices: 65515867--65516044 Score: 268
Period size: 96 Copynumber: 1.9 Consensus size: 94
65515857 TATACACTTC
* * *
65515867 CACATTCATCACATTGGCCATTTGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGC
1 CACATTCATCACATTGGCCATTCGGCCTTATCGCATATATACATGTTCACATTCATCACATTGGC
* *
65515932 CATTCGGCCTTATCACACATACACATGTT
66 CACTCGGCCCTATCACACATACACATGTT
*
65515961 CACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACT-TTCACATTCATCACATT
1 CACATTCATCACATTGGCCATTCGGCCTTAT--CGCATATATACA-TGTTCACATTCATCACATT
65516025 GGCCACTCGGCCCTATCACA
63 GGCCACTCGGCCCTATCACA
65516045 TATATATACT
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
94 30 0.40
96 44 0.59
97 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (94 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCGCATATATACATGTTCACATTCATCACATTGGC
CACTCGGCCCTATCACACATACACATGTT
Found at i:65521801 original size:11 final size:11
Alignment explanation
Indices: 65521771--65521802 Score: 57
Period size: 10 Copynumber: 3.0 Consensus size: 11
65521761 ATTTTTCCTA
65521771 GGATGTGAATT
1 GGATGTGAATT
65521782 GGATG-GAATT
1 GGATGTGAATT
65521792 GGATGTGAATT
1 GGATGTGAATT
65521803 ATATTTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.28, C:0.00, G:0.38, T:0.34
Consensus pattern (11 bp):
GGATGTGAATT
Found at i:65532410 original size:21 final size:21
Alignment explanation
Indices: 65532372--65532411 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
65532362 AATTTAACCA
**
65532372 TTTTTATTTTTATTTTAATAT
1 TTTTTATTTTTAAATTAATAT
*
65532393 TTTTTGTTTTTAAATTAAT
1 TTTTTATTTTTAAATTAAT
65532412 TGTTATATTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (21 bp):
TTTTTATTTTTAAATTAATAT
Found at i:65535657 original size:16 final size:15
Alignment explanation
Indices: 65535636--65535665 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
65535626 CTATCTTTTA
65535636 TTTTTATTGTTATTTG
1 TTTTTATT-TTATTTG
65535652 TTTTTATTTTATTT
1 TTTTTATTTTATTT
65535666 TTCAGACTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (15 bp):
TTTTTATTTTATTTG
Found at i:65541380 original size:41 final size:42
Alignment explanation
Indices: 65541299--65541380 Score: 96
Period size: 41 Copynumber: 2.0 Consensus size: 42
65541289 CTCGTCATAA
* * * *
65541299 GGGTGTGTGCCTACTTTCACATGGGCATTTACTGCTTCACAT
1 GGGTGTGTGCCTACTTCCACATGAGCATGTACGGCTTCACAT
*
65541341 GGGTGTGTGCCT-CTTCCACATGAGCGTGTA-GGCTATCACA
1 GGGTGTGTGCCTACTTCCACATGAGCATGTACGGCT-TCACA
65541381 CAGCCCAGGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
40 3 0.09
41 19 0.56
42 12 0.35
ACGTcount: A:0.17, C:0.24, G:0.27, T:0.32
Consensus pattern (42 bp):
GGGTGTGTGCCTACTTCCACATGAGCATGTACGGCTTCACAT
Found at i:65543311 original size:27 final size:27
Alignment explanation
Indices: 65543287--65543454 Score: 104
Period size: 27 Copynumber: 6.3 Consensus size: 27
65543277 AATTACCTCT
65543287 TGTTTACTATCCTGGTGGACCACCTTG
1 TGTTTACTATCCTGGTGGACCACCTTG
* ** *
65543314 TGTTTACTATCCTGGTGGACTATATTA
1 TGTTTACTATCCTGGTGGACCACCTTG
* ** ** * *
65543341 TGTTTACTGTCCCAGCAGACTACCTCG
1 TGTTTACTATCCTGGTGGACCACCTTG
* * * *
65543368 TGTTTACTATCTTGGTAGACTACCTTA
1 TGTTTACTATCCTGGTGGACCACCTTG
* * *** * *
65543395 TGTTTAC-GTCCTAGCATACTACCTCG
1 TGTTTACTATCCTGGTGGACCACCTTG
* * *
65543421 TGTTTACTATCCTAGTGGACTACCTCG
1 TGTTTACTATCCTGGTGGACCACCTTG
65543448 TGTTTAC
1 TGTTTAC
65543455 CGTCTCGATG
Statistics
Matches: 109, Mismatches: 31, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
26 19 0.17
27 90 0.83
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.39
Consensus pattern (27 bp):
TGTTTACTATCCTGGTGGACCACCTTG
Found at i:65543442 original size:53 final size:54
Alignment explanation
Indices: 65543308--65543454 Score: 197
Period size: 53 Copynumber: 2.7 Consensus size: 54
65543298 CTGGTGGACC
* **
65543308 ACCTTGTGTTTACTATCCTGGTGGACTATATTATGTTTACTGTCCCAGCAGACT
1 ACCTCGTGTTTACTATCCTGGTGGACTACCTTATGTTTACTGTCCCAGCAGACT
* * * *
65543362 ACCTCGTGTTTACTATCTTGGTAGACTACCTTATGTTTAC-GTCCTAGCATACT
1 ACCTCGTGTTTACTATCCTGGTGGACTACCTTATGTTTACTGTCCCAGCAGACT
* **
65543415 ACCTCGTGTTTACTATCCTAGTGGACTACCTCGTGTTTAC
1 ACCTCGTGTTTACTATCCTGGTGGACTACCTTATGTTTAC
65543455 CGTCTCGATG
Statistics
Matches: 81, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 46 0.57
54 35 0.43
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (54 bp):
ACCTCGTGTTTACTATCCTGGTGGACTACCTTATGTTTACTGTCCCAGCAGACT
Found at i:65543466 original size:27 final size:27
Alignment explanation
Indices: 65543412--65543472 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
65543402 GTCCTAGCAT
* *
65543412 ACTACCTCGTGTTTACTATCCTAGTGG
1 ACTACCTCGTGTTTACCATCCGAGTGG
*
65543439 ACTACCTCGTGTTTACCGTCTCGA-TGG
1 ACTACCTCGTGTTTACCATC-CGAGTGG
65543466 ACTACCT
1 ACTACCT
65543473 ATGTTATCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 28 0.93
28 2 0.07
ACGTcount: A:0.18, C:0.30, G:0.18, T:0.34
Consensus pattern (27 bp):
ACTACCTCGTGTTTACCATCCGAGTGG
Found at i:65557915 original size:31 final size:31
Alignment explanation
Indices: 65557880--65558056 Score: 221
Period size: 31 Copynumber: 5.7 Consensus size: 31
65557870 GTATATGTTT
*
65557880 TATACATTGCCGAATTTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* *
65557911 TATACATTGCAGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATGGA
* *
65557942 TATACATTGTCGAATTCGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* * * *
65557973 TATTCATTGCCTAATTTGATTTGAATATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* * *
65558004 TGTACATTACCGAATTTGATTCGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* *
65558035 TATATATTGCCTAA-TTGATTTG
1 TATACATTGCCGAATTTGATTTG
65558057 AGCAGTGGAT
Statistics
Matches: 121, Mismatches: 25, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
30 7 0.06
31 114 0.94
ACGTcount: A:0.30, C:0.10, G:0.17, T:0.44
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATGGA
Found at i:65558019 original size:93 final size:92
Alignment explanation
Indices: 65557884--65558056 Score: 247
Period size: 93 Copynumber: 1.9 Consensus size: 92
65557874 ATGTTTTATA
* * * *
65557884 CATTGCCGAATTTGATTTGTATATAGATATACATTGCAGAATTTGATTTGTATATGGTTATACAT
1 CATTGCCGAATTTGATTTGAATATAGATATACATTACAGAATTTGATTCGTATATGGATATACAT
*
65557949 TGTCGAATTCGATTTGTATATGGATATT
66 TGCCGAATT-GATTTGTATATGGATATT
* * * *
65557977 CATTGCCTAATTTGATTTGAATATAGATGTACATTACCGAATTTGATTCGTATATGGATATATAT
1 CATTGCCGAATTTGATTTGAATATAGATATACATTACAGAATTTGATTCGTATATGGATATACAT
*
65558042 TGCCTAATTGATTTG
66 TGCCGAATTGATTTG
65558057 AGCAGTGGAT
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
92 6 0.09
93 64 0.91
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.43
Consensus pattern (92 bp):
CATTGCCGAATTTGATTTGAATATAGATATACATTACAGAATTTGATTCGTATATGGATATACAT
TGCCGAATTGATTTGTATATGGATATT
Found at i:65564014 original size:41 final size:41
Alignment explanation
Indices: 65563823--65564013 Score: 283
Period size: 41 Copynumber: 4.7 Consensus size: 41
65563813 GGGCATTTGA
* *
65563823 CGGCGTTTTTGAAAAAGAGCCGCTAATGCTTGGGCCTTTAG
1 CGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAG
* * *
65563864 CGGCGTTTTTGGATAAGCCCCGCTAATGCTCGGGCCTTTAG
1 CGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAG
* * *
65563905 CTGCGTTTTTGTAGAAGCGCCGCTAATGCTCGGGCCTTTAG
1 CGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAG
* *
65563946 CGGCGTTTTTGAAAAAGCGCCGCTAATACTCAGGCCTTTAG
1 CGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAG
*
65563987 CAGCGTTTTTGAAAAAGCGCCGCTAAT
1 CGGCGTTTTTGAAAAAGCGCCGCTAAT
65564014 AATAATAAAA
Statistics
Matches: 135, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 135 1.00
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (41 bp):
CGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGCCTTTAG
Found at i:65564874 original size:33 final size:33
Alignment explanation
Indices: 65564828--65564906 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
65564818 ATTAAATAAT
* * * *
65564828 GTTTAGGGGTTAGGGATTCGGGGTCATGTTAGG
1 GTTTAGGGTTTAGGGATCCAGGGTCAGGTTAGG
**
65564861 GTTTAGGGTTTAGGGATCCAGGGTTGGGTTAGG
1 GTTTAGGGTTTAGGGATCCAGGGTCAGGTTAGG
*
65564894 GTTTAAGGTTTAG
1 GTTTAGGGTTTAG
65564907 ATTAATTAGC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.16, C:0.05, G:0.43, T:0.35
Consensus pattern (33 bp):
GTTTAGGGTTTAGGGATCCAGGGTCAGGTTAGG
Found at i:65567026 original size:31 final size:31
Alignment explanation
Indices: 65566990--65567057 Score: 136
Period size: 31 Copynumber: 2.2 Consensus size: 31
65566980 CACTCTGTTG
65566990 AGTTGCCATTCTCTATCTCTTCTAATTTATC
1 AGTTGCCATTCTCTATCTCTTCTAATTTATC
65567021 AGTTGCCATTCTCTATCTCTTCTAATTTATC
1 AGTTGCCATTCTCTATCTCTTCTAATTTATC
65567052 AGTTGC
1 AGTTGC
65567058 AAGAAATGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.19, C:0.25, G:0.09, T:0.47
Consensus pattern (31 bp):
AGTTGCCATTCTCTATCTCTTCTAATTTATC
Found at i:65568185 original size:21 final size:20
Alignment explanation
Indices: 65568159--65568204 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
65568149 CTAGGGTGCA
65568159 ATCGAGTCGAGCCCTAATATT
1 ATCGAG-CGAGCCCTAATATT
*
65568180 ATCGAGCTAGCCCTAATATT
1 ATCGAGCGAGCCCTAATATT
65568200 ATCGA
1 ATCGA
65568205 ACTTGAACTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (20 bp):
ATCGAGCGAGCCCTAATATT
Done.