Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 22 of 203
Found at i:7279395 original size:67 final size:67
Alignment explanation
Indices: 7279287--7279422 Score: 247
Period size: 67 Copynumber: 2.0 Consensus size: 67
7279277 AATCTCCCAT
*
7279287 AGTATGTTTTGAGAACCTTAATGATTACATAAGTGACACCTAAAAGCTTTCAGTCATCCACATCT
1 AGTATGTTTTGAGAACCTTAATGATTACATAAGTGACACCTAAAAGCTTTCAGTCATCAACATCT
7279352 AA
66 AA
7279354 AGTATGTTTTGAGAACCTTAATGATTACGA-AAGTGACACCTAAAAGCTTTCAGTCATCAACATC
1 AGTATGTTTTGAGAACCTTAATGATTAC-ATAAGTGACACCTAAAAGCTTTCAGTCATCAACATC
7279418 TAA
65 TAA
7279421 AG
1 AG
7279423 CACTTGAACA
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
67 66 0.99
68 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (67 bp):
AGTATGTTTTGAGAACCTTAATGATTACATAAGTGACACCTAAAAGCTTTCAGTCATCAACATCT
AA
Found at i:7285590 original size:6 final size:6
Alignment explanation
Indices: 7285579--7285603 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7285569 AGTTGAAGGC
7285579 ACATAT ACATAT ACATAT ACATAT A
1 ACATAT ACATAT ACATAT ACATAT A
7285604 AGAAATCAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (6 bp):
ACATAT
Found at i:7288949 original size:51 final size:51
Alignment explanation
Indices: 7288893--7288994 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
7288883 AAGAATAAAA
7288893 GGAGAGTATATATTATTTATATATATAAAAGAGTAAGAAAAAAAATATCCC
1 GGAGAGTATATATTATTTATATATATAAAAGAGTAAGAAAAAAAATATCCC
*
7288944 GGAGAGTATATATTATTTATATATATAAAAGAGTAAGAAAAAAACTATCCC
1 GGAGAGTATATATTATTTATATATATAAAAGAGTAAGAAAAAAAATATCCC
7288995 AGAAATAACT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (51 bp):
GGAGAGTATATATTATTTATATATATAAAAGAGTAAGAAAAAAAATATCCC
Found at i:7295022 original size:18 final size:17
Alignment explanation
Indices: 7295001--7295039 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
7294991 TAGACCAACA
7295001 AAAATTAAATAAATAATT
1 AAAATTAAATAAA-AATT
**
7295019 AAAATTTCATAAAAATT
1 AAAATTAAATAAAAATT
7295036 AAAA
1 AAAA
7295040 AAAATATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
AAAATTAAATAAAAATT
Found at i:7307426 original size:75 final size:75
Alignment explanation
Indices: 7307321--7307622 Score: 460
Period size: 75 Copynumber: 4.0 Consensus size: 75
7307311 GGAACAACCT
*
7307321 AATATGGGCCAGAGTACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
1 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
7307386 ACCACCTCAA
66 ACCACCTCAA
* *
7307396 AATATGGGCCAGGATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCGCCACGGCA
1 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
7307461 ACCACCTCAA
66 ACCACCTCAA
*
7307471 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAATATCCACCACGGCA
1 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
*
7307536 ACCACCACAA
66 ACCACCTCAA
* * * * ** * * * *
7307546 AATATGGGCCAGAATACGAGAGAGACAGTTAGGTCAGCACCCCAGTTCCCATATCAACGACGGCA
1 AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
*
7307611 ACCACCCCAA
66 ACCACCTCAA
7307621 AA
1 AA
7307623 CATGAATGCT
Statistics
Matches: 210, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 210 1.00
ACGTcount: A:0.35, C:0.29, G:0.21, T:0.14
Consensus pattern (75 bp):
AATATGGGCCAGAATACAAGAGAGTCAGTCAGGTCAGAACCCTGGTTCCAAAATCCACCACGGCA
ACCACCTCAA
Found at i:7308919 original size:18 final size:18
Alignment explanation
Indices: 7308864--7308920 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
7308854 AAATTTGATA
**
7308864 TAAATTCGATATAAGTCT
1 TAAATTCGATATAAACCT
** *
7308882 TAAATTTTAAACTCAAACCT
1 TAAATTCGATA-T-AAACCT
7308902 TAAATTCGATATAAACCT
1 TAAATTCGATATAAACCT
7308920 T
1 T
7308921 GAATCTGAAG
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
18 15 0.52
19 2 0.07
20 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (18 bp):
TAAATTCGATATAAACCT
Found at i:7315789 original size:18 final size:20
Alignment explanation
Indices: 7315748--7315793 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
7315738 GCCATCCATA
*
7315748 TAAAAATAAAAATTTACAACT
1 TAAAAA-AAAAAGTTACAACT
7315769 TAAAAAAAAAAGTTAC-A-T
1 TAAAAAAAAAAGTTACAACT
7315787 TAAAAAA
1 TAAAAAA
7315794 TCCCAAAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 8 0.33
19 1 0.04
20 9 0.38
21 6 0.25
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24
Consensus pattern (20 bp):
TAAAAAAAAAAGTTACAACT
Found at i:7324091 original size:66 final size:66
Alignment explanation
Indices: 7323975--7324160 Score: 291
Period size: 66 Copynumber: 2.8 Consensus size: 66
7323965 TTTATTTTCT
* * * * *
7323975 CTATCTAAAAAATTGACAAATTAATTCTTATAAGTTAGATAAAAAATAATACATCACCGTGAGTT
1 CTAT-TAAAAAACTGACAAATTAATTCTTATACGTTAGATCAAAATTAATACATCACCATGAGTT
7324040 AC
65 AC
*
7324042 CTGTTAAAAAACTGACAAATTAATTCTTATACGTTAGATCAAAATTAATACATCACCATGAGTTA
1 CTATTAAAAAACTGACAAATTAATTCTTATACGTTAGATCAAAATTAATACATCACCATGAGTTA
*
7324107 T
66 C
*
7324108 CTATTAAAAAACTGACAAATTAATTCTTATACATTAGATCAAAATTAATACAT
1 CTATTAAAAAACTGACAAATTAATTCTTATACGTTAGATCAAAATTAATACAT
7324161 TACATTCCAG
Statistics
Matches: 110, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
66 107 0.97
67 3 0.03
ACGTcount: A:0.46, C:0.14, G:0.08, T:0.33
Consensus pattern (66 bp):
CTATTAAAAAACTGACAAATTAATTCTTATACGTTAGATCAAAATTAATACATCACCATGAGTTA
C
Found at i:7324191 original size:15 final size:15
Alignment explanation
Indices: 7324171--7324200 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7324161 TACATTCCAG
7324171 GTGTCTCTATTTAAT
1 GTGTCTCTATTTAAT
7324186 GTGTCTCTATTTAAT
1 GTGTCTCTATTTAAT
7324201 TATTCTGTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.53
Consensus pattern (15 bp):
GTGTCTCTATTTAAT
Found at i:7333001 original size:9 final size:9
Alignment explanation
Indices: 7332987--7333011 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7332977 TTATTAATTT
7332987 AAAATTTTA
1 AAAATTTTA
7332996 AAAATTTTA
1 AAAATTTTA
7333005 AAAATTT
1 AAAATTT
7333012 GAAATAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
AAAATTTTA
Found at i:7337951 original size:170 final size:168
Alignment explanation
Indices: 7337645--7337986 Score: 558
Period size: 169 Copynumber: 2.0 Consensus size: 168
7337635 CTACAATGCC
* * *
7337645 AATTTTAAAAGCACGTTAGTAAGTTGTTGATAAAAAAAGATAGAATTGAATATTAGGTGACCATT
1 AATTTTAAAAGCACGTTAGCAAGTTGTTGATAAAAAAAGATAGAATTGAATATTAGGTGAACATC
* *
7337710 TTGTAACTTTTCATAGTTTGGTGATATAAAAAGAAATTTACTAATAGTTAGATGATCATTTTATA
66 TTGTAACTTTTCATAATTTGGTGATATAAAAAGAAATTTACTAATAGTTAGATAATCATTTTATA
*
7337775 ATTTTTCATAAATAAGTTTGAATAAAATAATTACTAAT
131 ATTTTTCATAAATAAGTTTAAATAAAATAATTACTAAT
*
7337813 AATTTTAAAAAGCACGTTAGCAAGTTGTTGATAAAAAAAGTTAGAATTGAATATTAGGTGAACAT
1 AATTTT-AAAAGCACGTTAGCAAGTTGTTGATAAAAAAAGATAGAATTGAATATTAGGTGAACAT
* * **
7337878 CTTGTAATTTTTCATAATTTGGTGATATAAAAAAGAAATTTATTAATAGTTAGATAATTTTTTTA
65 CTTGTAACTTTTCATAATTTGGTGATAT-AAAAAGAAATTTACTAATAGTTAGATAATCATTTTA
*
7337943 TAATTTTTCATAAATAAGTTTAAATAAAATAATTATTAAT
129 TAATTTTTCATAAATAAGTTTAAATAAAATAATTACTAAT
7337983 AATT
1 AATT
7337987 AAGTGACTAT
Statistics
Matches: 160, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
168 6 0.04
169 80 0.50
170 74 0.46
ACGTcount: A:0.43, C:0.05, G:0.13, T:0.40
Consensus pattern (168 bp):
AATTTTAAAAGCACGTTAGCAAGTTGTTGATAAAAAAAGATAGAATTGAATATTAGGTGAACATC
TTGTAACTTTTCATAATTTGGTGATATAAAAAGAAATTTACTAATAGTTAGATAATCATTTTATA
ATTTTTCATAAATAAGTTTAAATAAAATAATTACTAAT
Found at i:7339619 original size:16 final size:16
Alignment explanation
Indices: 7339598--7339633 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7339588 ATTTTGATTT
7339598 ATTTAGATTAAAGTTA
1 ATTTAGATTAAAGTTA
* *
7339614 ATTTAGATTGAGGTTA
1 ATTTAGATTAAAGTTA
7339630 ATTT
1 ATTT
7339634 TGAATTTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (16 bp):
ATTTAGATTAAAGTTA
Found at i:7339679 original size:16 final size:16
Alignment explanation
Indices: 7339660--7339690 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7339650 ATTTAAATCA
7339660 TTTTAGATTCAAATTG
1 TTTTAGATTCAAATTG
*
7339676 TTTTGGATTCAAATT
1 TTTTAGATTCAAATT
7339691 ATCAGAGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (16 bp):
TTTTAGATTCAAATTG
Found at i:7339870 original size:32 final size:32
Alignment explanation
Indices: 7339834--7339894 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
7339824 TGATACAAGG
*
7339834 GTCATTTCAA-GTTCA-AGTCATTTTGAATTTGA
1 GTCATTT-AAGGTTCATA-TCATTTTAAATTTGA
7339866 GTCATTTAAGGTTCATATCATTTTAAATT
1 GTCATTTAAGGTTCATATCATTTTAAATT
7339895 CGGATTAGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 2 0.08
32 23 0.88
33 1 0.04
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (32 bp):
GTCATTTAAGGTTCATATCATTTTAAATTTGA
Found at i:7359108 original size:194 final size:195
Alignment explanation
Indices: 7358544--7359206 Score: 943
Period size: 194 Copynumber: 3.4 Consensus size: 195
7358534 AAACATACAT
* * * * * **
7358544 AAACCAAGAAAAAAACTTCATTCCTCTACTGGTCATTCGAAACAGTAATAATTGATGTCATTATT
1 AAACCAAGCAAAAAACTTCATTCCTCTATTGATCATTCTAAACACTAATAATTGATGTTGTTATT
* * * * * * *
7358609 GACCAGAATTACCATATGGTTGATATGCTTAGACCGACAAACGAACTGTATAGTTACAGCAAATA
66 GACCAGAATTACCACATGGTTGATATGCTTAAAACAATAAATGAACTATATAGTTACAGCAAATA
* *
7358674 ACTTCAACATAAACACACAAGAACAAAACTCCTTATAGCAGCCCTGACAAGGTGAAACGAAGCAC
131 ACTTCAACATAAACACACAAGAACAAAACTCCTTATAGCAGCCCTGACAAGGTAAAACAAAGCAC
* *
7358739 AAACCGAGCAAAAAACTTCATTCCTCTATTGATCATATTCTAAACTCTAATAATTGATGTTGTTA
1 AAACCAAGCAAAAAACTTCATTCCTCTATTGATC--ATTCTAAACACTAATAATTGATGTTGTTA
** * * *
7358804 TTGACTGGGATTACCACATGGTTGATATGCTTAAAACAATAAATGAACTATATAATTACAGCATA
64 TTGACCAGAATTACCACATGGTTGATATGCTTAAAACAATAAATGAACTATATAGTTACAGCAAA
* * *
7358869 TAACTTCAACATAAACACACAAGAACAGAACTCCTTATGGCAGCCCTGACAAGGTAAAAAAAAGC
129 TAACTTCAACATAAACACACAAGAACAAAACTCCTTATAGCAGCCCTGACAAGGTAAAACAAAGC
7358934 AC
194 AC
* * *
7358936 AAACCAAGCAAAAAACTTCATTCCTCTATTGATCATT-TAATCACTAATAATTGATGTTGCTATG
1 AAACCAAGCAAAAAACTTCATTCCTCTATTGATCATTCTAAACACTAATAATTGATGTTGTTATT
* *
7359000 GACCAGAACTACCACATGGTTGATATGCTTAAAACAATAAATGAACTATATAGTTACAACAAATA
66 GACCAGAATTACCACATGGTTGATATGCTTAAAACAATAAATGAACTATATAGTTACAGCAAATA
* * *
7359065 ACTTCAACATAAACACACAAGAACAAAACTACTTATAGCAGCCCTGAGAAGGTACAACAAAGCAC
131 ACTTCAACATAAACACACAAGAACAAAACTCCTTATAGCAGCCCTGACAAGGTAAAACAAAGCAC
* *
7359130 AAACCAAGCAAAAAACTTCATGCCTCTATTGATCATTCTAAAAAACTAATAATTGAT-TATGTTA
1 AAACCAAGCAAAAAACTTCATTCCTCTATTGATCATTCT-AAACACTAATAATTGATGT-TGTTA
*
7359194 GTGACCAGAATTA
64 TTGACCAGAATTA
7359207 TATAAAGAAT
Statistics
Matches: 412, Mismatches: 51, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
194 176 0.43
195 35 0.08
196 29 0.07
197 172 0.42
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (195 bp):
AAACCAAGCAAAAAACTTCATTCCTCTATTGATCATTCTAAACACTAATAATTGATGTTGTTATT
GACCAGAATTACCACATGGTTGATATGCTTAAAACAATAAATGAACTATATAGTTACAGCAAATA
ACTTCAACATAAACACACAAGAACAAAACTCCTTATAGCAGCCCTGACAAGGTAAAACAAAGCAC
Found at i:7361322 original size:20 final size:19
Alignment explanation
Indices: 7361293--7361330 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
7361283 ATTATTTTAT
7361293 TTTAATATAAAAAATTAAC
1 TTTAATATAAAAAATTAAC
7361312 TTTATATATAAAAAATTAA
1 TTTA-ATATAAAAAATTAA
7361331 AAAATGTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (19 bp):
TTTAATATAAAAAATTAAC
Found at i:7372808 original size:24 final size:23
Alignment explanation
Indices: 7372781--7372826 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
7372771 GAGTTTCTTC
7372781 TCCTAGT-TAAACTCTGTTATATTT
1 TCCTAGTCT-AACTCTGTT-TATTT
7372805 TCCTAGTCTAACTCTGTTTATT
1 TCCTAGTCTAACTCTGTTTATT
7372827 CTAGGGATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.19
24 16 0.76
25 1 0.05
ACGTcount: A:0.22, C:0.20, G:0.09, T:0.50
Consensus pattern (23 bp):
TCCTAGTCTAACTCTGTTTATTT
Found at i:7374625 original size:21 final size:21
Alignment explanation
Indices: 7374599--7374666 Score: 75
Period size: 21 Copynumber: 3.1 Consensus size: 21
7374589 TAGGGAAAAA
*
7374599 AAAAACTCAAGTACCAAATTG
1 AAAAACTCAGGTACCAAATTG
7374620 AAAAACTC-GGTACCAACATTG
1 AAAAACTCAGGTACCAA-ATTG
*
7374641 AAACCAAATCTAGGTACCAAATTG
1 AAA--AACTC-AGGTACCAAATTG
7374665 AA
1 AA
7374667 CATCGAATTC
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
20 7 0.17
21 15 0.38
23 4 0.10
24 6 0.15
25 8 0.20
ACGTcount: A:0.49, C:0.21, G:0.12, T:0.19
Consensus pattern (21 bp):
AAAAACTCAGGTACCAAATTG
Found at i:7380960 original size:317 final size:317
Alignment explanation
Indices: 7380385--7381027 Score: 1277
Period size: 317 Copynumber: 2.0 Consensus size: 317
7380375 TATAAAAGAG
*
7380385 TTAATTGCACCTATAGGCAATAGTTAATGTTTTCAGAATCGGACCAGTGCCATCGGTCTAAATAG
1 TTAATTGCCCCTATAGGCAATAGTTAATGTTTTCAGAATCGGACCAGTGCCATCGGTCTAAATAG
7380450 AGATGGCACCGAGGGACAAGCGAGGGCGCTGACCGCCCAAAATAGTAAACTACCATTTGGCCGCA
66 AGATGGCACCGAGGGACAAGCGAGGGCGCTGACCGCCCAAAATAGTAAACTACCATTTGGCCGCA
7380515 AAGATGAAAGTTTTTGATTTAATCCCTTTTAAAATTCTAAATTAATAAGCATATACAAAGATAAA
131 AAGATGAAAGTTTTTGATTTAATCCCTTTTAAAATTCTAAATTAATAAGCATATACAAAGATAAA
7380580 ATGGTAAACTATATCTATGGTCACTTTTGTTTACCTCATGTTACATTTTAGTCACTTATGTCTGA
196 ATGGTAAACTATATCTATGGTCACTTTTGTTTACCTCATGTTACATTTTAGTCACTTATGTCTGA
7380645 AATGTTACGTTTTAGTCACTTACGTTTTCATGTTGTAACATTTTAATCATTGAGCTA
261 AATGTTACGTTTTAGTCACTTACGTTTTCATGTTGTAACATTTTAATCATTGAGCTA
7380702 TTAATTGCCCCTATAGGCAATAGTTAATGTTTTCAGAATCGGACCAGTGCCATCGGTCTAAATAG
1 TTAATTGCCCCTATAGGCAATAGTTAATGTTTTCAGAATCGGACCAGTGCCATCGGTCTAAATAG
7380767 AGATGGCACCGAGGGACAAGCGAGGGCGCTGACCGCCCAAAATAGTAAACTACCATTTGGCCGCA
66 AGATGGCACCGAGGGACAAGCGAGGGCGCTGACCGCCCAAAATAGTAAACTACCATTTGGCCGCA
7380832 AAGATGAAAGTTTTTGATTTAATCCCTTTTAAAATTCTAAATTAATAAGCATATACAAAGATAAA
131 AAGATGAAAGTTTTTGATTTAATCCCTTTTAAAATTCTAAATTAATAAGCATATACAAAGATAAA
7380897 ATGGTAAACTATATCTATGGTCACTTTTGTTTACCTCATGTTACATTTTAGTCACTTATGTCTGA
196 ATGGTAAACTATATCTATGGTCACTTTTGTTTACCTCATGTTACATTTTAGTCACTTATGTCTGA
7380962 AATGTTACGTTTTAGTCACTTACGTTTTCATGTTGTAACATTTTAATCATTGAGCTA
261 AATGTTACGTTTTAGTCACTTACGTTTTCATGTTGTAACATTTTAATCATTGAGCTA
7381019 TTAATTGCC
1 TTAATTGCC
7381028 ATTAACAGTG
Statistics
Matches: 325, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
317 325 1.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.34
Consensus pattern (317 bp):
TTAATTGCCCCTATAGGCAATAGTTAATGTTTTCAGAATCGGACCAGTGCCATCGGTCTAAATAG
AGATGGCACCGAGGGACAAGCGAGGGCGCTGACCGCCCAAAATAGTAAACTACCATTTGGCCGCA
AAGATGAAAGTTTTTGATTTAATCCCTTTTAAAATTCTAAATTAATAAGCATATACAAAGATAAA
ATGGTAAACTATATCTATGGTCACTTTTGTTTACCTCATGTTACATTTTAGTCACTTATGTCTGA
AATGTTACGTTTTAGTCACTTACGTTTTCATGTTGTAACATTTTAATCATTGAGCTA
Found at i:7387391 original size:20 final size:19
Alignment explanation
Indices: 7387360--7387407 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
7387350 TTTAGAAAAA
7387360 TTTTAAAATTTTAAAATTT
1 TTTTAAAATTTTAAAATTT
* *
7387379 TTTTAAGAATTTTTATATTT
1 TTTTAA-AATTTTAAAATTT
*
7387399 TTTAAAAAT
1 TTTTAAAAT
7387408 ATAAATCTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
TTTTAAAATTTTAAAATTT
Found at i:7389374 original size:16 final size:16
Alignment explanation
Indices: 7389335--7389373 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
7389325 ATTTATTCGA
*
7389335 ATCATTTTGAATTTAG
1 ATCATTTTAAATTTAG
7389351 ATCATTTTAAATTTAG
1 ATCATTTTAAATTTAG
7389367 AT-ATTTT
1 ATCATTTT
7389374 TTTTTGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (16 bp):
ATCATTTTAAATTTAG
Found at i:7390388 original size:21 final size:24
Alignment explanation
Indices: 7390342--7390388 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
7390332 ATGAAATTAC
*
7390342 TAAAAATTAATTATTTTTATAAAA
1 TAAAAAATAATTATTTTTATAAAA
7390366 TAAAAAAT-ATTA-TTTTA-AAAA
1 TAAAAAATAATTATTTTTATAAAA
7390387 TA
1 TA
7390389 CTTTTATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 6 0.27
22 5 0.23
23 4 0.18
24 7 0.32
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TAAAAAATAATTATTTTTATAAAA
Found at i:7392614 original size:16 final size:16
Alignment explanation
Indices: 7392589--7392632 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
7392579 TCAAACAAAT
*
7392589 AACCCAAAATGATTGA
1 AACCCAAAATGATTCA
*
7392605 AACCCGAAATGATTCA
1 AACCCAAAATGATTCA
*
7392621 AACCTAAAATGA
1 AACCCAAAATGA
7392633 CTCGATAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.50, C:0.20, G:0.11, T:0.18
Consensus pattern (16 bp):
AACCCAAAATGATTCA
Found at i:7408160 original size:21 final size:21
Alignment explanation
Indices: 7408134--7408174 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7408124 ATCTGCTCAA
* *
7408134 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
7408155 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
7408175 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:7415313 original size:101 final size:101
Alignment explanation
Indices: 7415196--7416170 Score: 881
Period size: 101 Copynumber: 9.7 Consensus size: 101
7415186 ATGAAAAGGC
* *
7415196 CACGTGTAGATTATGTATAGTTCACTTGTCTCCCTCAAATTATGATGGGAGGTTTATATAGCCAT
1 CACGTGTAGATCATGTATAGTTCACTTGTCTCCCTCAAATTATGATGGGAGGCTTATATAGCCAT
* *
7415261 CAAATCTCGTAGGACAAGTGTGTGGCGTGTAAAAGT
66 CAAATCTCATAGGACAAGTGTGTGGCATGTAAAAGT
* * * * ** * ** * *
7415297 CACATGCAGATCATGTATTGTCCACTTGTCTCCCTCTGATTATAATAAGAGCCTTATAT-GCTCT
1 CACGTGTAGATCATGTATAGTTCACTTGTCTCCCTCAAATTATGATGGGAGGCTTATATAGC-CA
* * * *
7415361 TCAAATCCCGTGGGACAAGTGTG-GAGCATGTAAAGGT
65 TCAAATCTCATAGGACAAGTGTGTG-GCATGTAAAAGT
* ** * *
7415398 CACATGTAGATTGTGTATAGTTCACTTGTCTCCCTCAAGTTATGATGGGAGGCTGATATAGCCAT
1 CACGTGTAGATCATGTATAGTTCACTTGTCTCCCTCAAATTATGATGGGAGGCTTATATAGCCAT
* * * *
7415463 CAAGTCTTATCA-GACAAGTGTG-GAGCATGAAAAAGC
66 CAAATCTCAT-AGGACAAGTGTGTG-GCATGTAAAAGT
* * * *
7415499 CACATGTA-AGTCGTGTATAGTTCATTTGTCTCCCTCAAACTATGATGGGAGGC-T-TATAGCCA
1 CACGTGTAGA-TCATGTATAGTTCACTTGTCTCCCTCAAATTATGATGGGAGGCTTATATAGCCA
* * *
7415561 TCAAATCTCATAAGACAAGTGTGTGGGATTTAAAAGT
65 TCAAATCTCATAGGACAAGTGTGTGGCATGTAAAAGT
* *
7415598 CACGTGTAGATCATGTATAGTCCACTTGTCT-CCTCCTAATTATGATGGGAGGCTTATAT-GCCC
1 CACGTGTAGATCATGTATAGTTCACTTGTCTCCCT-CAAATTATGATGGGAGGCTTATATAG-CC
* * * *
7415661 CTCAAATCGCAT-GGTACAAGTGTGTAGTATGTAAAAGT
64 ATCAAATCTCATAGG-ACAAGTGTGTGGCATGTAAAAGT
* * * * * * *
7415699 CACGTGCAGATCGTGTATAGTCCACATGTCTCCCCCTAATTATGATGGGAGGCTTATAT-GCCCC
1 CACGTGTAGATCATGTATAGTTCACTTGTCTCCCTCAAATTATGATGGGAGGCTTATATAG-CCA
* * * *
7415763 TCAAATCTCAT-GATACAAGTGTGTAGTATGTAAAGGT
65 TCAAATCTCATAG-GACAAGTGTGTGGCATGTAAAAGT
* * * *
7415800 CACGTGTAGATCGTGTATAGTTCACTTTTCTCCCTTAAGTTATGATGGGAGGCTTATATAGCCAT
1 CACGTGTAGATCATGTATAGTTCACTTGTCTCCCTCAAATTATGATGGGAGGCTTATATAGCCAT
* ** * *
7415865 CAAGTCTTGTAAGACAAGTGTG-GAGCATGTAAATGT
66 CAAATCTCATAGGACAAGTGTGTG-GCATGTAAAAGT
* * * * * *
7415901 CACGTGTA-AGTCATGTAGAATTCATTTGTCTCCCTCAAGTTATGATGGAAGGC-T-TATAGTCA
1 CACGTGTAGA-TCATGTATAGTTCACTTGTCTCCCTCAAATTATGATGGGAGGCTTATATAGCCA
* * * *
7415963 TCAAATTTCATAGGACAAGTGAGTGGGATTTAAAAGT
65 TCAAATCTCATAGGACAAGTGTGTGGCATGTAAAAGT
* * * * * *
7416000 CACATATAAATCATGTATAGTTCACTTGTCTCCCCCCAATTATGATGGGAGGCTTATAT-GCCCC
1 CACGTGTAGATCATGTATAGTTCACTTGTCTCCCTCAAATTATGATGGGAGGCTTATATAG-CCA
*
7416064 TCAAATCTCAT-GAGACAAGTGTGTAGCATGT-AAAGAT
65 TCAAATCTCATAG-GACAAGTGTGTGGCATGTAAAAG-T
* * * * * * *** * *
7416101 CAGGTATAGATCATGTATAGTTCACGTGTATTCCTTAAATTATGATTAAAGGTTTAGATAGCCAT
1 CACGTGTAGATCATGTATAGTTCACTTGTCTCCCTCAAATTATGATGGGAGGCTTATATAGCCAT
7416166 CAAAT
66 CAAAT
7416171 TTCGTAATAT
Statistics
Matches: 713, Mismatches: 134, Indels: 54
0.79 0.15 0.06
Matches are distributed among these distances:
98 4 0.01
99 151 0.21
100 20 0.03
101 532 0.75
102 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (101 bp):
CACGTGTAGATCATGTATAGTTCACTTGTCTCCCTCAAATTATGATGGGAGGCTTATATAGCCAT
CAAATCTCATAGGACAAGTGTGTGGCATGTAAAAGT
Found at i:7415717 original size:301 final size:299
Alignment explanation
Indices: 7415175--7416124 Score: 1038
Period size: 301 Copynumber: 3.2 Consensus size: 299
7415165 TTTGTGGGAT
* ** *
7415175 AAGTGCGGAGCATGAAAAGGCCACGTGTAGATTATGTATAGTTCACTTGTCTCCCTCAAATTATG
1 AAGTGTGGAGCATGAAAAGGCCACGTGTAGATCGTGTATAGTTCATTTGTCTCCCTCAAATTATG
* * * *
7415240 ATGGGAGGTTTATATAGCCATCAAATCTCGTAGGACAAGTGTGTGGCG-TGTAAAAGTCACATGC
66 ATGGGAGG-CTATATAGCCATCAAATCTCGTAAGACAAGTGTGTGG-GATGTAAAAGTCACGTGT
* * * ** * *
7415304 AGATCATGTATTGTCCACTTGTCTCCCTCTGATTATAATAAGAGCCTTATATGCTCTTCAAATCC
129 AGATCATGTATAGTCCACTTGTCTCCC-CTAATTATGATGGGAGGCTTATATGCTCATCAAATCC
* * * * *
7415369 CGTGGGACAAGTGTGGAGCATGTAAAGGTCACATGTAGATTGTGTATAGTTCACTTGTCTCCCTC
193 CAT-GGACAAGTGTGTAGCATGTAAAAGTCACATGTAGATCGTGTATAGTTCACTTGTCTCCCCC
* * * * *
7415434 AAGTTATGATGGGAGGCTGATATAG-CCATCAAGTCTTATCAGAC
257 AA-TTATGATGGGAGGCTTATAT-GCCCCTCAAATCTCATGAGAC
* * *
7415478 AAGTGTGGAGCATGAAAAAGCCACATGTA-AGTCGTGTATAGTTCATTTGTCTCCCTCAAACTAT
1 AAGTGTGGAGCATGAAAAGGCCACGTGTAGA-TCGTGTATAGTTCATTTGTCTCCCTCAAATTAT
* *
7415542 GATGGGAGGCT-TATAGCCATCAAATCTCATAAGACAAGTGTGTGGGATTTAAAAGTCACGTGTA
65 GATGGGAGGCTATATAGCCATCAAATCTCGTAAGACAAGTGTGTGGGATGTAAAAGTCACGTGTA
* * *
7415606 GATCATGTATAGTCCACTTGTCTCCTCCTAATTATGATGGGAGGCTTATATGCCCCTCAAATCGC
130 GATCATGTATAGTCCACTTGTCTCC-CCTAATTATGATGGGAGGCTTATATGCTCATCAAATCCC
* * * * *
7415671 ATGGTACAAGTGTGTAGTATGTAAAAGTCACGTGCAGATCGTGTATAGTCCACATGTCTCCCCCT
194 ATGG-ACAAGTGTGTAGCATGTAAAAGTCACATGTAGATCGTGTATAGTTCACTTGTCTCCCCC-
*
7415736 AATTATGATGGGAGGCTTATATGCCCCTCAAATCTCATGATAC
257 AATTATGATGGGAGGCTTATATGCCCCTCAAATCTCATGAGAC
* * * * * *
7415779 AAGTGTGTAGTATGTAAAGGTCACGTGTAGATCGTGTATAGTTCACTTT-TCTCCCTTAAGTTAT
1 AAGTGTGGAGCATGAAAAGGCCACGTGTAGATCGTGTATAGTTCA-TTTGTCTCCCTCAAATTAT
* * * *
7415843 GATGGGAGGCTTATATAGCCATCAAGTCTTGTAAGACAAGTGTG-GAGCATGTAAATGTCACGTG
65 GATGGGAGGC-TATATAGCCATCAAATCTCGTAAGACAAGTGTGTG-GGATGTAAAAGTCACGTG
* * * * *
7415907 TA-AGTCATGTAGAATTCATTTGTCT-CCCTCAAGTTATGATGGAAGGCTTATA-G-TCATCAAA
128 TAGA-TCATGTATAGTCCACTTGTCTCCCCT-AA-TTATGATGGGAGGCTTATATGCTCATCAAA
** * * * * * * *
7415968 TTTCATAGGACAAGTGAGTGGGATTTAAAAGTCACATATAAATCATGTATAGTTCACTTGTCTCC
190 TCCCAT-GGACAAGTGTGTAGCATGTAAAAGTCACATGTAGATCGTGTATAGTTCACTTGTCT-C
7416033 CCCCAATTATGATGGGAGGCTTATATGCCCCTCAAATCTCATGAGAC
253 CCCCAATTATGATGGGAGGCTTATATGCCCCTCAAATCTCATGAGAC
* * ** * * *
7416080 AAGTGTGTAGCATGTAAAGATCAGGTATAGATCATGTATAGTTCA
1 AAGTGTGGAGCATGAAAAGGCCACGTGTAGATCGTGTATAGTTCA
7416125 CGTGTATTCC
Statistics
Matches: 552, Mismatches: 79, Indels: 34
0.83 0.12 0.05
Matches are distributed among these distances:
300 4 0.01
301 381 0.69
302 23 0.04
303 144 0.26
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (299 bp):
AAGTGTGGAGCATGAAAAGGCCACGTGTAGATCGTGTATAGTTCATTTGTCTCCCTCAAATTATG
ATGGGAGGCTATATAGCCATCAAATCTCGTAAGACAAGTGTGTGGGATGTAAAAGTCACGTGTAG
ATCATGTATAGTCCACTTGTCTCCCCTAATTATGATGGGAGGCTTATATGCTCATCAAATCCCAT
GGACAAGTGTGTAGCATGTAAAAGTCACATGTAGATCGTGTATAGTTCACTTGTCTCCCCCAATT
ATGATGGGAGGCTTATATGCCCCTCAAATCTCATGAGAC
Found at i:7415911 original size:402 final size:400
Alignment explanation
Indices: 7415196--7416097 Score: 1257
Period size: 402 Copynumber: 2.2 Consensus size: 400
7415186 ATGAAAAGGC
* * *
7415196 CACGTGTAGATTATGTATAGTTCACTTGTCTCCCTCAAATTATGATGGGAGGTTTATATAG-CCA
1 CACGTGTAGATCATGTATAGTTCACTTGTCTCCC-CAAATTATGATGGGAGGCTTATAT-GCCCC
* * * * *
7415260 TCAAATCTCGTAGGACAAGTGTGTGGCGTGTAAAAGTCACATGCAGATCATGTATTGTCCACTTG
64 TCAAATCTCAT-GGACAAGTGTGTAGCATGTAAAAGTCACATGCAGATCATGTATAGTCCACATG
* * * * * *
7415325 TCTCCCTCTGATTATAATAAGAGCCTTATATGCTCTTCAAATCCCGTGGGACAAGTGTGGAGCAT
128 TCTCCCCCTAATTATAATAAGAGCCTTATATGCCCCTCAAATCCCATGAGACAAGTGTGGAGCAT
*
7415390 GTAAAGGTCACATGTAGATTGTGTATAGTTCACTTGTCTCCCTCAAGTTATGATGGGAGGCTGAT
193 GTAAAGGTCACATGTAGATCGTGTATAGTTCACTTGTCTCCCTCAAGTTATGATGGGAGGCTGAT
* * * *
7415455 ATAGCCATCAAGTCTTATCAGACAAGTGTGGAGCATGAAAAAGCCACATGTAAGTCGTGTATAGT
258 ATAGCCATCAAGTCTTATAAGACAAGTGTGGAGCATGAAAAAGCCACATGTAAGTCATGTAGAAT
* *
7415520 TCATTTGTCTCCCTCAAACTATGATGGGAGGCTTATAGCCATCAAATCTCATAAGACAAGTGTGT
323 TCATTTGTCTCCCTCAAACTATGATGGAAGGCTTATAGCCATCAAATCTCATAAGACAAGTGAGT
7415585 GGGATTTAAAAGT
388 GGGATTTAAAAGT
* *
7415598 CACGTGTAGATCATGTATAGTCCACTTGTCTCCTCCTAATTATGATGGGAGGCTTATATGCCCCT
1 CACGTGTAGATCATGTATAGTTCACTTGTCTCC-CCAAATTATGATGGGAGGCTTATATGCCCCT
* * * *
7415663 CAAATCGCATGGTACAAGTGTGTAGTATGTAAAAGTCACGTGCAGATCGTGTATAGTCCACATGT
65 CAAATCTCATGG-ACAAGTGTGTAGCATGTAAAAGTCACATGCAGATCATGTATAGTCCACATGT
* ** * * * * *
7415728 CTCCCCCTAATTATGATGGGAGGCTTATATGCCCCTCAAATCTCATGATACAAGTGTGTAGTATG
129 CTCCCCCTAATTATAATAAGAGCCTTATATGCCCCTCAAATCCCATGAGACAAGTGTGGAGCATG
* * * *
7415793 TAAAGGTCACGTGTAGATCGTGTATAGTTCACTTTTCTCCCTTAAGTTATGATGGGAGGCTTATA
194 TAAAGGTCACATGTAGATCGTGTATAGTTCACTTGTCTCCCTCAAGTTATGATGGGAGGCTGATA
* * * * *
7415858 TAGCCATCAAGTCTTGTAAGACAAGTGTGGAGCATGTAAATGTCACGTGTAAGTCATGTAGAATT
259 TAGCCATCAAGTCTTATAAGACAAGTGTGGAGCATGAAAAAGCCACATGTAAGTCATGTAGAATT
** * * *
7415923 CATTTGTCTCCCTCAAGTTATGATGGAAGGCTTATAGTCATCAAATTTCATAGGACAAGTGAGTG
324 CATTTGTCTCCCTCAAACTATGATGGAAGGCTTATAGCCATCAAATCTCATAAGACAAGTGAGTG
7415988 GGATTTAAAAGT
389 GGATTTAAAAGT
* * * *
7416000 CACATATAAATCATGTATAGTTCACTTGTCTCCCCCCAATTATGATGGGAGGCTTATATGCCCCT
1 CACGTGTAGATCATGTATAGTTCACTTGTCT-CCCCAAATTATGATGGGAGGCTTATATGCCCCT
7416065 CAAATCTCATGAGACAAGTGTGTAGCATGTAAA
65 CAAATCTCATG-GACAAGTGTGTAGCATGTAAA
7416098 GATCAGGTAT
Statistics
Matches: 439, Mismatches: 56, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
401 3 0.01
402 432 0.98
403 4 0.01
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (400 bp):
CACGTGTAGATCATGTATAGTTCACTTGTCTCCCCAAATTATGATGGGAGGCTTATATGCCCCTC
AAATCTCATGGACAAGTGTGTAGCATGTAAAAGTCACATGCAGATCATGTATAGTCCACATGTCT
CCCCCTAATTATAATAAGAGCCTTATATGCCCCTCAAATCCCATGAGACAAGTGTGGAGCATGTA
AAGGTCACATGTAGATCGTGTATAGTTCACTTGTCTCCCTCAAGTTATGATGGGAGGCTGATATA
GCCATCAAGTCTTATAAGACAAGTGTGGAGCATGAAAAAGCCACATGTAAGTCATGTAGAATTCA
TTTGTCTCCCTCAAACTATGATGGAAGGCTTATAGCCATCAAATCTCATAAGACAAGTGAGTGGG
ATTTAAAAGT
Found at i:7417783 original size:59 final size:60
Alignment explanation
Indices: 7417720--7417837 Score: 150
Period size: 59 Copynumber: 2.0 Consensus size: 60
7417710 GATTAGTTGG
* * *
7417720 GTAACCATTTTATAACTTTTCATAGTT-GGTGACCAA-AATAAAAATTTACTGATAGTTAA
1 GTAACCATTTTATAACTTTTCATAGTTAAGTAACCAAGAAT-AAAATTTACTAATAGTTAA
* * * *
7417779 GTAACCATTTTGTAATTTTTTATAGTTAAGTAACCAAGAATGAAATTTACTAATAGTTA
1 GTAACCATTTTATAACTTTTCATAGTTAAGTAACCAAGAATAAAATTTACTAATAGTTA
7417838 GGTGACTACT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 24 0.48
60 23 0.46
61 3 0.06
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (60 bp):
GTAACCATTTTATAACTTTTCATAGTTAAGTAACCAAGAATAAAATTTACTAATAGTTAA
Found at i:7418039 original size:17 final size:17
Alignment explanation
Indices: 7417996--7418038 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
7417986 TAAGGTTTAG
*
7417996 ATACTAAAATAATATAT
1 ATACCAAAATAATATAT
7418013 ATACCAAAATAGATATA-
1 ATACCAAAATA-ATATAT
7418030 ATTACCAAA
1 A-TACCAAA
7418039 TTTGGGATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (17 bp):
ATACCAAAATAATATAT
Found at i:7423510 original size:32 final size:31
Alignment explanation
Indices: 7423471--7423566 Score: 95
Period size: 32 Copynumber: 3.1 Consensus size: 31
7423461 AAAATTACTG
* *
7423471 AAAATTTTTAAATATTTTCATTAAGCCCTTC
1 AAAATTTTGAAAAATTTTCATTAAGCCCTTC
* * * **
7423502 AAATATTTTGAAAGATTTTTATTAAACTTTTC
1 AAA-ATTTTGAAAAATTTTCATTAAGCCCTTC
* *
7423534 AGAATTTTGAAAAATTCTCATTAAGCCC-TC
1 AAAATTTTGAAAAATTTTCATTAAGCCCTTC
7423564 AAA
1 AAA
7423567 GATTGTGTTT
Statistics
Matches: 50, Mismatches: 14, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
30 4 0.08
31 22 0.44
32 24 0.48
ACGTcount: A:0.39, C:0.14, G:0.06, T:0.42
Consensus pattern (31 bp):
AAAATTTTGAAAAATTTTCATTAAGCCCTTC
Found at i:7425570 original size:57 final size:57
Alignment explanation
Indices: 7425501--7425613 Score: 208
Period size: 57 Copynumber: 2.0 Consensus size: 57
7425491 AGCCATTACC
* *
7425501 CGAATAAGTTAACCCTGATTCCGACCCTGATCCTTGTGGTGTTGAACTTGTCGTCGA
1 CGAATAAGTTAACCCCGATTCCGACCCTGATCCTTGTGGTGTTGAACCTGTCGTCGA
7425558 CGAATAAGTTAACCCCGATTCCGACCCTGATCCTTGTGGTGTTGAACCTGTCGTCG
1 CGAATAAGTTAACCCCGATTCCGACCCTGATCCTTGTGGTGTTGAACCTGTCGTCG
7425614 GGGTAGTTTC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (57 bp):
CGAATAAGTTAACCCCGATTCCGACCCTGATCCTTGTGGTGTTGAACCTGTCGTCGA
Found at i:7425893 original size:12 final size:12
Alignment explanation
Indices: 7425876--7425901 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7425866 TTCAAGCTCG
7425876 TTACAACGTCAT
1 TTACAACGTCAT
7425888 TTACAACGTCAT
1 TTACAACGTCAT
7425900 TT
1 TT
7425902 CTTTAGTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (12 bp):
TTACAACGTCAT
Found at i:7426090 original size:42 final size:42
Alignment explanation
Indices: 7426031--7426112 Score: 137
Period size: 42 Copynumber: 2.0 Consensus size: 42
7426021 TAATTTTATA
* *
7426031 CCACTGATTCAACCACTAATTCTCGATTCAATCTATTAGTTT
1 CCACTAATTCAACCACTAATTCTCGATTCAACCTATTAGTTT
*
7426073 CCACTAATTGAACCACTAATTCTCGATTCAACCTATTAGT
1 CCACTAATTCAACCACTAATTCTCGATTCAACCTATTAGT
7426113 CCGATCTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (42 bp):
CCACTAATTCAACCACTAATTCTCGATTCAACCTATTAGTTT
Found at i:7436918 original size:13 final size:13
Alignment explanation
Indices: 7436900--7436926 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7436890 TTTACCTTTC
7436900 TTAAACAACACAA
1 TTAAACAACACAA
7436913 TTAAACAACACAA
1 TTAAACAACACAA
7436926 T
1 T
7436927 GCATCTTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.59, C:0.22, G:0.00, T:0.19
Consensus pattern (13 bp):
TTAAACAACACAA
Found at i:7444338 original size:18 final size:17
Alignment explanation
Indices: 7444305--7444343 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
7444295 TTGTATAAAT
7444305 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
7444323 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
7444340 TGTG
1 TGTG
7444344 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:7444596 original size:23 final size:23
Alignment explanation
Indices: 7444569--7444666 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
7444559 AGTGTTATTG
7444569 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
7444592 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
7444615 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7444637 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
7444660 ATCAGTG
1 ATCAGTG
7444667 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:7444635 original size:45 final size:45
Alignment explanation
Indices: 7444571--7444659 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
7444561 TGTTATTGAT
* *
7444571 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
7444616 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
7444660 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:7446401 original size:67 final size:67
Alignment explanation
Indices: 7446323--7446451 Score: 195
Period size: 67 Copynumber: 1.9 Consensus size: 67
7446313 TTTCTATGTT
* * *
7446323 ATGTCATTCGAGTTTGAAACTTAAGTCTTTTAATTTTGATCATTACGGGTTTAGATCATTTTGAG
1 ATGTCATTCGAGTTTGAAACTTAAGTCTTTTAATTTGGATCATCACAGGTTTAGATCATTTTGAG
7446388 TC
66 TC
* * * *
7446390 ATGTCATTCGAGTTTTAAGCTTAAGTCTTTTAATTTGGATCATCATAGGTTTATATCATTTT
1 ATGTCATTCGAGTTTGAAACTTAAGTCTTTTAATTTGGATCATCACAGGTTTAGATCATTTT
7446452 AAGTAATTTA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
67 55 1.00
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.47
Consensus pattern (67 bp):
ATGTCATTCGAGTTTGAAACTTAAGTCTTTTAATTTGGATCATCACAGGTTTAGATCATTTTGAG
TC
Found at i:7450543 original size:16 final size:15
Alignment explanation
Indices: 7450512--7450542 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7450502 TAAGTGAGGT
7450512 GTGGGGGCGGGGGGG
1 GTGGGGGCGGGGGGG
7450527 GTGGGGGCGGGGGGG
1 GTGGGGGCGGGGGGG
7450542 G
1 G
7450543 GGGACCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.06, G:0.87, T:0.06
Consensus pattern (15 bp):
GTGGGGGCGGGGGGG
Found at i:7458763 original size:31 final size:31
Alignment explanation
Indices: 7458728--7458800 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
7458718 GTTAGGTACT
* * *
7458728 AAATTGAATA-CTAAAGTCAAATTCAAGTAAC
1 AAATTGAATATC-AAAGCCAAACTCAAATAAC
* *
7458759 AAATTGAATATCAAAGCCAAGCTCAAATACC
1 AAATTGAATATCAAAGCCAAACTCAAATAAC
7458790 AAATTGAATAT
1 AAATTGAATAT
7458801 ATTGCGCTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
31 35 0.97
32 1 0.03
ACGTcount: A:0.51, C:0.15, G:0.10, T:0.25
Consensus pattern (31 bp):
AAATTGAATATCAAAGCCAAACTCAAATAAC
Found at i:7458945 original size:31 final size:31
Alignment explanation
Indices: 7458907--7458982 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
7458897 TTGGTTTGAC
7458907 TACCAAATTAAATATTGAAGCCAAACTC-AGA
1 TACCAAATTAAATATTGAAGCCAAACTCGA-A
* *
7458938 TACCAAATTAAACATTGAAGCTAAACTCGAA
1 TACCAAATTAAATATTGAAGCCAAACTCGAA
7458969 TACCAAATTAAATA
1 TACCAAATTAAATA
7458983 CTGAGCTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
31 40 0.98
32 1 0.02
ACGTcount: A:0.50, C:0.18, G:0.08, T:0.24
Consensus pattern (31 bp):
TACCAAATTAAATATTGAAGCCAAACTCGAA
Found at i:7459555 original size:30 final size:30
Alignment explanation
Indices: 7459521--7459578 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
7459511 CATGTCAAAT
7459521 TTTAACA-AAAATGA-TCAATTTGCTCTTTGA
1 TTTAACATAAAATGACT-AATTTGC-CTTTGA
*
7459551 TTTAACATATAATGACTAATTTGCCTTT
1 TTTAACATAAAATGACTAATTTGCCTTT
7459579 TTTTTTTAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 11 0.44
31 13 0.52
32 1 0.04
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (30 bp):
TTTAACATAAAATGACTAATTTGCCTTTGA
Found at i:7466848 original size:31 final size:31
Alignment explanation
Indices: 7466812--7466872 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
7466802 CAATATGGTC
7466812 ACTGAACTATTCGAAAGTTGTCATTTAAGTT
1 ACTGAACTATTCGAAAGTTGTCATTTAAGTT
* * *
7466843 ACTGAACTATTTGAAAGTTTTTATTTAAGT
1 ACTGAACTATTCGAAAGTTGTCATTTAAGT
7466873 CAAGTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.43
Consensus pattern (31 bp):
ACTGAACTATTCGAAAGTTGTCATTTAAGTT
Found at i:7471206 original size:97 final size:97
Alignment explanation
Indices: 7471089--7471265 Score: 241
Period size: 97 Copynumber: 1.8 Consensus size: 97
7471079 GCTCCTACAC
*
7471089 AATGTATCATCACCTTAAACAAACAATAAATAT-GCCAGA-ATTCTCGAATTAACCGAGCAATCT
1 AATGTATCATCACCTTAAACAAACAATAAATATAG-CA-ATATTCTCGAATTAACCGAGCAATCA
7471152 AATTTCAGCTAAATGAAGAAAACATGCTACTAAA
64 AATTTCAGCTAAATGAAGAAAACATGCTACTAAA
* * * * * **
7471186 AATGTATTATCATCTTAAACAAACAATACATATAGCAATGTTCTTGAATTAATTGAGCAATCAAA
1 AATGTATCATCACCTTAAACAAACAATAAATATAGCAATATTCTCGAATTAACCGAGCAATCAAA
*
7471251 TTTCAGCTAATTGAA
66 TTTCAGCTAAATGAA
7471266 CAAACCTTTA
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
96 1 0.01
97 67 0.97
98 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.29
Consensus pattern (97 bp):
AATGTATCATCACCTTAAACAAACAATAAATATAGCAATATTCTCGAATTAACCGAGCAATCAAA
TTTCAGCTAAATGAAGAAAACATGCTACTAAA
Found at i:7471515 original size:186 final size:186
Alignment explanation
Indices: 7471165--7471826 Score: 977
Period size: 186 Copynumber: 3.6 Consensus size: 186
7471155 TTCAGCTAAA
* * * * * ** *
7471165 TGAAGAAAACATGCTACTA-AAAATGTATTATCATCTTAAACAAACAATACATATAGCAATGTTC
1 TGAAGAAAGCATGCTCCTACACAATGTATCATCATCTTAAACAAACAATAAATATAGTGATATTC
* ** * * *
7471229 TTGAATTAATTGAGCAATCAAATTTCAGCTAATTGAACAAACCTTTAGGGTTGATTAGCAGCCTC
66 TCGAATTAACCGAGCAATCAAATTTCAGCTAATCGAACAAGCCTTTGGGGTTGATTAGCAGCCTC
* * *
7471294 AACAGACTCAGCAGCAGCATATAGAA-AGTTCATATACAAACCAATGAGCTTCATAC
131 AACAGACTCAGAAGCAGCATATA-AACAGTTCATATACAAACCAACGAGATTCATAC
* *
7471350 TGAAGAAAGCATGCTCCTACACTATGTATCATCATCGTAAACAAACAATAAATATAGTGATATTC
1 TGAAGAAAGCATGCTCCTACACAATGTATCATCATCTTAAACAAACAATAAATATAGTGATATTC
* * *
7471415 TTGAATTAACCGAGCAGTCAAATTTCAGCTAATGGAACAAGCCTTTGGGGTTGATTAGCAGCCTC
66 TCGAATTAACCGAGCAATCAAATTTCAGCTAATCGAACAAGCCTTTGGGGTTGATTAGCAGCCTC
* *
7471480 AATAGACTCTGAAGCAGCATATAAACAGTTCATATACAAACCAACGAGATTCATAC
131 AACAGACTCAGAAGCAGCATATAAACAGTTCATATACAAACCAACGAGATTCATAC
*
7471536 TGAAGAAAGCATGCTCCTACACAATGTATCATCGTCTTAAACAAACAATAAATATAGTGATATTC
1 TGAAGAAAGCATGCTCCTACACAATGTATCATCATCTTAAACAAACAATAAATATAGTGATATTC
* * * * *
7471601 TCAAATTAAACGAGCAATCGAATTTCAGCTAACCGAACAAGCCTTTGGGGTTGATGAGCAGCCTC
66 TCGAATTAACCGAGCAATCAAATTTCAGCTAATCGAACAAGCCTTTGGGGTTGATTAGCAGCCTC
*
7471666 AGCAGACTCAGAAGCAGCATATAAACAGTTCATATACAAACCAACGAGATTCATAC
131 AACAGACTCAGAAGCAGCATATAAACAGTTCATATACAAACCAACGAGATTCATAC
*
7471722 TGAAGAAAGCATGCTCCTACACAATGTATCATCATCTTAAACAAACAATACATATAGTGATATTC
1 TGAAGAAAGCATGCTCCTACACAATGTATCATCATCTTAAACAAACAATAAATATAGTGATATTC
* * * *
7471787 TCGAATTTACCAAGCAAACAAATTTCAGCTCATCGAACAA
66 TCGAATTAACCGAGCAATCAAATTTCAGCTAATCGAACAA
7471827 AACATGCTCC
Statistics
Matches: 430, Mismatches: 45, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
185 19 0.04
186 411 0.96
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (186 bp):
TGAAGAAAGCATGCTCCTACACAATGTATCATCATCTTAAACAAACAATAAATATAGTGATATTC
TCGAATTAACCGAGCAATCAAATTTCAGCTAATCGAACAAGCCTTTGGGGTTGATTAGCAGCCTC
AACAGACTCAGAAGCAGCATATAAACAGTTCATATACAAACCAACGAGATTCATAC
Found at i:7471901 original size:98 final size:98
Alignment explanation
Indices: 7471731--7471925 Score: 266
Period size: 98 Copynumber: 2.0 Consensus size: 98
7471721 CTGAAGAAAG
* * ** *
7471731 CATGCTCCTACACAATGTATCATCATCTTAAACAAACAATACATATAGTGATATTCTCGAATTTA
1 CATGCTCCTACACAATCTATCATAATCTTAAACAAACAATACATATAGCAATATTCTCGAATTAA
* *
7471796 CCAAGCAAACAAATTTCAGCTCATCGAACAAAA
66 CCAAGCAAACAAACTTCAGCTAATCGAACAAAA
* * *
7471829 CATGCTCCTACACATTCTATGATAATCTTCAACAAACAATGA-ATATAGCAATATTCTCGAATTA
1 CATGCTCCTACACAATCTATCATAATCTTAAACAAACAAT-ACATATAGCAATATTCTCGAATTA
* *
7471893 ACCGAGCAACCAAACTTCAGCTAATCGAACAAA
65 ACCAAGCAAACAAACTTCAGCTAATCGAACAAA
7471926 CCTTTAGGGT
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
98 83 0.99
99 1 0.01
ACGTcount: A:0.42, C:0.24, G:0.09, T:0.26
Consensus pattern (98 bp):
CATGCTCCTACACAATCTATCATAATCTTAAACAAACAATACATATAGCAATATTCTCGAATTAA
CCAAGCAAACAAACTTCAGCTAATCGAACAAAA
Found at i:7475437 original size:4 final size:4
Alignment explanation
Indices: 7475416--7475457 Score: 57
Period size: 4 Copynumber: 9.8 Consensus size: 4
7475406 CTCAACTGAA
7475416 TAAC TAAC TCAATTC TAAC TAAC TAAC TAAC TAAC TAAC TAA
1 TAAC TAAC T-AA--C TAAC TAAC TAAC TAAC TAAC TAAC TAA
7475458 ACAGAATAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 29 0.83
5 2 0.06
6 2 0.06
7 2 0.06
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.29
Consensus pattern (4 bp):
TAAC
Found at i:7486176 original size:25 final size:25
Alignment explanation
Indices: 7486142--7486192 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
7486132 TAATGGCTAT
7486142 ATGGAAAGAGTAGATTAAAAATAAA
1 ATGGAAAGAGTAGATTAAAAATAAA
7486167 ATGGAAAGAGTAGATTAAAAATAAA
1 ATGGAAAGAGTAGATTAAAAATAAA
7486192 A
1 A
7486193 GCATTCAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.20
Consensus pattern (25 bp):
ATGGAAAGAGTAGATTAAAAATAAA
Found at i:7490570 original size:37 final size:37
Alignment explanation
Indices: 7490509--7490774 Score: 392
Period size: 37 Copynumber: 7.0 Consensus size: 37
7490499 TACGTATGAT
* *
7490509 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
7490544 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
7490581 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
7490618 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
7490655 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
7490692 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T--AGC
*
7490735 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 ---CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
7490775 TAAAGCTATC
Statistics
Matches: 215, Mismatches: 5, Indels: 17
0.91 0.02 0.07
Matches are distributed among these distances:
35 9 0.04
36 3 0.01
37 159 0.74
39 2 0.01
40 4 0.02
41 1 0.00
42 1 0.00
43 4 0.02
44 2 0.01
46 30 0.14
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:7490745 original size:46 final size:46
Alignment explanation
Indices: 7490692--7491104 Score: 520
Period size: 46 Copynumber: 8.6 Consensus size: 46
7490682 TAAGTGTAGC
* *
7490692 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
7490738 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * * *
7490784 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGTAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
7490830 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
7490882 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
*
7490928 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
7490980 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* * *
7491026 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
7491078 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
7491105 AGTACTCAAA
Statistics
Matches: 327, Mismatches: 22, Indels: 36
0.85 0.06 0.09
Matches are distributed among these distances:
46 198 0.61
48 2 0.01
49 2 0.01
50 2 0.01
52 123 0.38
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
Found at i:7490892 original size:98 final size:98
Alignment explanation
Indices: 7490692--7491104 Score: 667
Period size: 98 Copynumber: 4.3 Consensus size: 98
7490682 TAAGTGTAGC
* * **
7490692 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCAC--T----TT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
*
7490751 GTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
* * *
7490784 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGTAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
*
7490849 GTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
*
7490882 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
*
7490947 GTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
*
7490980 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
*
7491045 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
66 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
7491078 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
7491105 AGTACTCAAA
Statistics
Matches: 303, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
92 52 0.17
94 1 0.00
98 250 0.83
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (98 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
Found at i:7496064 original size:24 final size:23
Alignment explanation
Indices: 7496027--7496074 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
7496017 TCTATTTTTA
7496027 TATTTAAATTTTGTTGGTTTGTT
1 TATTTAAATTTTGTTGGTTTGTT
*
7496050 TATTTAATATTTTGTTTGTTTGTT
1 TATTTAA-ATTTTGTTGGTTTGTT
7496074 T
1 T
7496075 GGTTTACTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.17, C:0.00, G:0.15, T:0.69
Consensus pattern (23 bp):
TATTTAAATTTTGTTGGTTTGTT
Found at i:7496139 original size:23 final size:23
Alignment explanation
Indices: 7496094--7496143 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
7496084 TTTGTGAATG
*
7496094 TGTTTGTTTAATGTTCGCAAACA
1 TGTTTGTTTAATGTTCACAAACA
**
7496117 TGTTTGTTTAATGTTCATGAACA
1 TGTTTGTTTAATGTTCACAAACA
7496140 TGTT
1 TGTT
7496144 CGTGAACATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.24, C:0.10, G:0.18, T:0.48
Consensus pattern (23 bp):
TGTTTGTTTAATGTTCACAAACA
Found at i:7499714 original size:17 final size:18
Alignment explanation
Indices: 7499694--7499728 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7499684 TGATTCCAAA
7499694 TAAA-TATATTTTTAAAT
1 TAAATTATATTTTTAAAT
*
7499711 TAAATTATGTTTTTAAAT
1 TAAATTATATTTTTAAAT
7499729 AGAGAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TAAATTATATTTTTAAAT
Found at i:7517081 original size:16 final size:16
Alignment explanation
Indices: 7517046--7517081 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7517036 TATTATGCTT
*
7517046 TAGCCTGATTCAAATT
1 TAGCCTGATTCAAATC
*
7517062 TAGCCTGATTCAGATC
1 TAGCCTGATTCAAATC
7517078 TAGC
1 TAGC
7517082 ACAATCCGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (16 bp):
TAGCCTGATTCAAATC
Found at i:7520798 original size:54 final size:53
Alignment explanation
Indices: 7520735--7520842 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 53
7520725 TTTGAACTAT
*
7520735 TCATGTGGAAAAAAAAGTTAGATTACCCAAGAATCCGGAGAAGGCGGCATTCC
1 TCATGTGGAAAAAAAAGTTAGATTACCCAAGAATCCGAAGAAGGCGGCATTCC
* *
7520788 NTCATGTGGAAAAAGAAGTTAGATTACCCAAGAATCCGAAGAAGGTGGCATTCC
1 -TCATGTGGAAAAAAAAGTTAGATTACCCAAGAATCCGAAGAAGGCGGCATTCC
7520842 T
1 T
7520843 TGATCGACCG
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 1 0.02
54 50 0.98
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
TCATGTGGAAAAAAAAGTTAGATTACCCAAGAATCCGAAGAAGGCGGCATTCC
Found at i:7525129 original size:44 final size:44
Alignment explanation
Indices: 7525077--7525178 Score: 141
Period size: 44 Copynumber: 2.3 Consensus size: 44
7525067 AAATAATTAC
7525077 TCAATTGACATTAATATCATCATAAATTCGTAGAAATAGTAGAT
1 TCAATTGACATTAATATCATCATAAATTCGTAGAAATAGTAGAT
* * * * *
7525121 TCAATTGACATTAATATTATCATAAATTTGTATAAATGGTGGAT
1 TCAATTGACATTAATATCATCATAAATTCGTAGAAATAGTAGAT
* *
7525165 TCAAGTGAAATTAA
1 TCAATTGACATTAA
7525179 ATAAGTAATA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (44 bp):
TCAATTGACATTAATATCATCATAAATTCGTAGAAATAGTAGAT
Found at i:7528156 original size:39 final size:38
Alignment explanation
Indices: 7528113--7528186 Score: 96
Period size: 39 Copynumber: 1.9 Consensus size: 38
7528103 TTAATATATA
7528113 TTTTTAATAATTTTAATGATGTTT-AATTTTTAAAAATAG
1 TTTTTAATAATTTT--TGATGTTTAAATTTTTAAAAATAG
* * *
7528152 TTTTTTATAATTTTTTATTTTTAAATTTTTAAAAA
1 TTTTTAATAATTTTTGATGTTTAAATTTTTAAAAA
7528187 AAATTAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 6 0.19
38 12 0.39
39 13 0.42
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.59
Consensus pattern (38 bp):
TTTTTAATAATTTTTGATGTTTAAATTTTTAAAAATAG
Found at i:7532748 original size:16 final size:15
Alignment explanation
Indices: 7532735--7532778 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 15
7532725 AATGTTTTAA
7532735 GTTTGGATTATTTTGG
1 GTTTGGATTATTTT-G
7532751 GTTT-GAGTTATTTTG
1 GTTTGGA-TTATTTTG
7532766 GATTTGGATTATT
1 G-TTTGGATTATT
7532779 CAAAATTGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 4 0.16
16 19 0.76
17 2 0.08
ACGTcount: A:0.16, C:0.00, G:0.27, T:0.57
Consensus pattern (15 bp):
GTTTGGATTATTTTG
Found at i:7534135 original size:30 final size:30
Alignment explanation
Indices: 7534101--7534188 Score: 87
Period size: 30 Copynumber: 3.0 Consensus size: 30
7534091 TCAATTATTA
7534101 GAAATTATTAAAATATTAT-AAAATTTAAAT
1 GAAATTA-TAAAATATTATAAAAATTTAAAT
* *
7534131 GAAA-TA-AAAAAATTATAGGAAAATTTATAT
1 GAAATTATAAAATATTATA--AAAATTTAAAT
7534161 -AAATTA-ATAAATATTATAAAAATTTAAA
1 GAAATTATA-AAATATTATAAAAATTTAAA
7534189 AATTATTAGT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
27 9 0.18
29 14 0.29
30 17 0.35
31 9 0.18
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (30 bp):
GAAATTATAAAATATTATAAAAATTTAAAT
Found at i:7534142 original size:29 final size:28
Alignment explanation
Indices: 7534110--7534188 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 28
7534100 AGAAATTATT
7534110 AAAATATTATAAAATTTAAATGAAATAAA
1 AAAATATTATAAAATTTAAAT-AAATAAA
* * *
7534139 AAAAT-TATAGGAAAATTTATATAAATTAA
1 AAAATAT-TA-TAAAATTTAAATAAATAAA
*
7534168 TAAATATTATAAAAATTTAAA
1 AAAATATTAT-AAAATTTAAA
7534189 AATTATTAGT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
28 1 0.03
29 28 0.70
30 11 0.28
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (28 bp):
AAAATATTATAAAATTTAAATAAATAAA
Found at i:7542425 original size:104 final size:105
Alignment explanation
Indices: 7542245--7542510 Score: 446
Period size: 104 Copynumber: 2.5 Consensus size: 105
7542235 TAACCGTTAT
* **
7542245 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
7542310 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
7542349 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
7542414 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
7542454 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCC
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCC
7542511 TTTTATATAC
Statistics
Matches: 152, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 82 0.54
105 69 0.45
106 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.18
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:7542881 original size:30 final size:30
Alignment explanation
Indices: 7542847--7542904 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
7542837 CCACCCAACT
7542847 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
*** * *
7542877 TTTTGCGTAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
7542905 GCTCGGAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:7548973 original size:17 final size:17
Alignment explanation
Indices: 7548928--7548974 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 17
7548918 GTTAAAAAAA
*
7548928 TTATATTAATTATATAT
1 TTATATTAAATATATAT
*
7548945 TTGAATAATAAATATATAT
1 TT--ATATTAAATATATAT
7548964 TTATATTAAAT
1 TTATATTAAAT
7548975 CACTAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 10 0.40
19 15 0.60
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (17 bp):
TTATATTAAATATATAT
Found at i:7551042 original size:13 final size:13
Alignment explanation
Indices: 7551024--7551048 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7551014 CGATCATTAT
7551024 AAGAAAGAAAAAA
1 AAGAAAGAAAAAA
7551037 AAGAAAGAAAAA
1 AAGAAAGAAAAA
7551049 CCCAATGAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAGAAAGAAAAAA
Found at i:7562068 original size:25 final size:25
Alignment explanation
Indices: 7562039--7562088 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
7562029 CATGCAAAGC
*
7562039 TGATGAAGTTG-GCTAGCATGCTGCA
1 TGATGAAG-TGAGCCAGCATGCTGCA
7562064 TGATGAAGTGAGCCAGCATGCTGCA
1 TGATGAAGTGAGCCAGCATGCTGCA
7562089 CCACCAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (25 bp):
TGATGAAGTGAGCCAGCATGCTGCA
Found at i:7567021 original size:2 final size:2
Alignment explanation
Indices: 7567014--7567039 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7567004 CGTGTGCTAG
7567014 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7567040 GCATGCCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7569238 original size:19 final size:19
Alignment explanation
Indices: 7569204--7569257 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
7569194 TCTCTCTCAA
7569204 TTAAAATTACAAAATAATTT
1 TTAAAATTACAAAAT-ATTT
*
7569224 TTAAAATT-TAAAATATTT
1 TTAAAATTACAAAATATTT
* *
7569242 ATAAAAGTTCCAAAAT
1 TTAAAA-TTACAAAAT
7569258 TTATATTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 9 0.31
19 7 0.24
20 13 0.45
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.39
Consensus pattern (19 bp):
TTAAAATTACAAAATATTT
Found at i:7572289 original size:3 final size:3
Alignment explanation
Indices: 7572281--7572310 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
7572271 GGGAGCAAAG
*
7572281 GAA GAA GAA GAA GAA TAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
7572311 AAATAATTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.03
Consensus pattern (3 bp):
GAA
Found at i:7572641 original size:8 final size:9
Alignment explanation
Indices: 7572606--7572641 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
7572596 GATTTCGCGG
7572606 TAGGGTTTT
1 TAGGGTTTT
7572615 TAGGGTTTT
1 TAGGGTTTT
* *
7572624 TCGGATTTT
1 TAGGGTTTT
7572633 TAGGGTTTT
1 TAGGGTTTT
7572642 GGAGAGAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.11, C:0.03, G:0.31, T:0.56
Consensus pattern (9 bp):
TAGGGTTTT
Found at i:7572744 original size:9 final size:9
Alignment explanation
Indices: 7572732--7572767 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
7572722 TAATTAAATT
7572732 AATTTATTA
1 AATTTATTA
*
7572741 AATTTATAA
1 AATTTATTA
7572750 AATTTATT-
1 AATTTATTA
7572758 AATTTATTA
1 AATTTATTA
7572767 A
1 A
7572768 CTTTTTGGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 8 0.33
9 16 0.67
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
AATTTATTA
Found at i:7582045 original size:27 final size:27
Alignment explanation
Indices: 7582015--7582099 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 27
7582005 TTTAATTGTT
*
7582015 ATTTGCCTAAGTTTTGTCTTTTTTACG
1 ATTTGCCTAAGTTTTATCTTTTTTACG
* * ** **
7582042 ATTTAGGCCAAAG-GTTAT-TTAATTATT
1 ATTT--GCCTAAGTTTTATCTTTTTTACG
7582069 ATTTGCCTAAGTTTTATCTTTTTTACG
1 ATTTGCCTAAGTTTTATCTTTTTTACG
7582096 ATTT
1 ATTT
7582100 AGTCCTTTTT
Statistics
Matches: 41, Mismatches: 13, Indels: 8
0.66 0.21 0.13
Matches are distributed among these distances:
25 6 0.15
26 4 0.10
27 22 0.54
28 3 0.07
29 6 0.15
ACGTcount: A:0.22, C:0.12, G:0.13, T:0.53
Consensus pattern (27 bp):
ATTTGCCTAAGTTTTATCTTTTTTACG
Found at i:7585530 original size:83 final size:83
Alignment explanation
Indices: 7585391--7585553 Score: 299
Period size: 83 Copynumber: 2.0 Consensus size: 83
7585381 TGAACTTGAT
*
7585391 AATTGTTCTTACATTAGAGCTTGAACTTTCTTTTTGTTTAAGTTAGTACATGATATTTCATTGAA
1 AATTGTTCTCACATTAGAGCTTGAACTTTCTTTTTGTTTAAGTTAGTACATGATATTTCATTGAA
7585456 AACTCTAAAATTTAGGAC
66 AACTCTAAAATTTAGGAC
* *
7585474 AATTGTTCTCACATTAGAGTTTGAACTTTCTTTTTGTTTAAGTTAGTACATTATATTTCATTGAA
1 AATTGTTCTCACATTAGAGCTTGAACTTTCTTTTTGTTTAAGTTAGTACATGATATTTCATTGAA
7585539 AACTCTAAAATTTAG
66 AACTCTAAAATTTAG
7585554 ATTCTAATGT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 77 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (83 bp):
AATTGTTCTCACATTAGAGCTTGAACTTTCTTTTTGTTTAAGTTAGTACATGATATTTCATTGAA
AACTCTAAAATTTAGGAC
Found at i:7587295 original size:7 final size:7
Alignment explanation
Indices: 7587283--7587314 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
7587273 TAGGTATATT
7587283 GTTCTTG
1 GTTCTTG
7587290 GTTCTTG
1 GTTCTTG
7587297 GTTCTTG
1 GTTCTTG
*
7587304 GTTCTTC
1 GTTCTTG
7587311 GTTC
1 GTTC
7587315 ATGTATCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.00, C:0.19, G:0.25, T:0.56
Consensus pattern (7 bp):
GTTCTTG
Found at i:7598221 original size:15 final size:16
Alignment explanation
Indices: 7598197--7598238 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
7598187 AAAATTTTTT
*
7598197 ATATATTTTTAATTTA
1 ATATAATTTTAATTTA
*
7598213 ATA-AATTTTCATTTA
1 ATATAATTTTAATTTA
*
7598228 TTATAATTTTA
1 ATATAATTTTA
7598239 TATAAATGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (16 bp):
ATATAATTTTAATTTA
Found at i:7606991 original size:42 final size:42
Alignment explanation
Indices: 7606895--7606992 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
7606885 CTATACGAAT
* ** * *
7606895 GGCACTAAGTGTACGAAATTAAAATGACGATGTTGAATAACG
1 GGCACTAAGTGTGCGAAAAAAAAATGACGATGTCGAATAACA
*
7606937 GGCACTAAGTGTGCGAAAAAAAAATGACGATGTCGACTAACA
1 GGCACTAAGTGTGCGAAAAAAAAATGACGATGTCGAATAACA
7606979 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
7606993 AATACCAAGA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.20
Consensus pattern (42 bp):
GGCACTAAGTGTGCGAAAAAAAAATGACGATGTCGAATAACA
Found at i:7610810 original size:73 final size:73
Alignment explanation
Indices: 7610691--7611533 Score: 1677
Period size: 73 Copynumber: 11.5 Consensus size: 73
7610681 TATTATTATT
*
7610691 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
7610756 ATTTTAAG
66 ATTTTAAG
7610764 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
7610829 ATTTTAAG
66 ATTTTAAG
7610837 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
7610902 ATTTTAAG
66 ATTTTAAG
7610910 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
7610975 ATTTTAAG
66 ATTTTAAG
7610983 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
7611048 ATTTTAAG
66 ATTTTAAG
7611056 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
7611121 ATTTTAAG
66 ATTTTAAG
7611129 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
7611194 ATTTTAAG
66 ATTTTAAG
7611202 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
7611267 ATTTTAAG
66 ATTTTAAG
7611275 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
7611340 ATTTTAAG
66 ATTTTAAG
7611348 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
7611413 ATTTTAAG
66 ATTTTAAG
7611421 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
7611486 ATTTTAAG
66 ATTTTAAG
7611494 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
7611534 GTCAAGTTGT
Statistics
Matches: 769, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 769 1.00
ACGTcount: A:0.28, C:0.06, G:0.26, T:0.41
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
ATTTTAAG
Found at i:7615760 original size:3 final size:3
Alignment explanation
Indices: 7615752--7615906 Score: 310
Period size: 3 Copynumber: 51.7 Consensus size: 3
7615742 ATCACATGTT
7615752 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7615800 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7615848 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7615896 TTA TTA TTA TT
1 TTA TTA TTA TT
7615907 TGGATGTAAT
Statistics
Matches: 152, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 152 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7619746 original size:47 final size:47
Alignment explanation
Indices: 7619687--7619780 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
7619677 CTGGGCAAGC
* *
7619687 AGACGAGGGTAAAATTTGGTTCAGCAATCCACAGTACGGAAGGAATT
1 AGACAAGGGTAAAATTTGGTTCAGCAATCCACAATACGGAAGGAATT
* *
7619734 AGACAAGGGTAAAATTTGGTTTAGCAATTCACAATACGGAAGGAATT
1 AGACAAGGGTAAAATTTGGTTCAGCAATCCACAATACGGAAGGAATT
7619781 CTGGACTATG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (47 bp):
AGACAAGGGTAAAATTTGGTTCAGCAATCCACAATACGGAAGGAATT
Found at i:7623595 original size:71 final size:70
Alignment explanation
Indices: 7623480--7623619 Score: 244
Period size: 71 Copynumber: 2.0 Consensus size: 70
7623470 CATATTTAAT
*
7623480 GGGTACATAAGCTAAATAATATGCTATTTTTTACTTAGAATGATCAAATCCACCACAAATTGTCA
1 GGGTACATAAGCTAAATAATATGCTATATTTTACTTAGAATGATCAAATCCACCACAAATTGTCA
7623545 AAGAC
66 AAGAC
* *
7623550 GGGTACATTAAGCTAAATAATATGCTATATTTTCCTTAGAATGATCAAATCCACCACAAGTTGTC
1 GGGTACA-TAAGCTAAATAATATGCTATATTTTACTTAGAATGATCAAATCCACCACAAATTGTC
7623615 AAAGA
65 AAAGA
7623620 TAAAAGAAAA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
70 7 0.11
71 59 0.89
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (70 bp):
GGGTACATAAGCTAAATAATATGCTATATTTTACTTAGAATGATCAAATCCACCACAAATTGTCA
AAGAC
Found at i:7624607 original size:30 final size:30
Alignment explanation
Indices: 7624535--7624607 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
7624525 GAAAGTCGAG
* *
7624535 TTCCTATATATAAAATTTTTATTGTGACCAT
1 TTCC-ATATATAGAATTCTTATTGTGACCAT
*
7624566 TTCCATATATAGAATTCTTATTTTGACCAT
1 TTCCATATATAGAATTCTTATTGTGACCAT
*
7624596 TTCCATTTATAG
1 TTCCATATATAG
7624608 GATTGACGGC
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
30 34 0.89
31 4 0.11
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.48
Consensus pattern (30 bp):
TTCCATATATAGAATTCTTATTGTGACCAT
Found at i:7628879 original size:25 final size:25
Alignment explanation
Indices: 7628851--7628913 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
7628841 ATAAGAGCCA
* *
7628851 TAATCAGGAAGTTCACAAAGAATTT
1 TAATCAGGAAGCTCACAAAGAACTT
* **
7628876 TAATCAGGAAGCTCACGAAGGCCTT
1 TAATCAGGAAGCTCACAAAGAACTT
7628901 TAATCAGG-AGCTC
1 TAATCAGGAAGCTC
7628914 CGAATAGCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
24 5 0.15
25 28 0.85
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.24
Consensus pattern (25 bp):
TAATCAGGAAGCTCACAAAGAACTT
Found at i:7628889 original size:49 final size:51
Alignment explanation
Indices: 7628795--7628890 Score: 119
Period size: 50 Copynumber: 1.9 Consensus size: 51
7628785 TCCTCTTTCA
*
7628795 AGCCATACAACAGGAAGCTTAAAAAGAGTTATTAATCGGAAAGCTCATAAG
1 AGCCATACAACAGGAAGCTTAAAAAGAATTATTAATCGGAAAGCTCATAAG
* *
7628846 AGCCATA-ATCAGGAAG-TTCACAAAGAATT-TTAATCAGG-AAGCTCA
1 AGCCATACAACAGGAAGCTT-AAAAAGAATTATTAATC-GGAAAGCTCA
7628891 CGAAGGCCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
49 15 0.38
50 18 0.45
51 7 0.17
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.21
Consensus pattern (51 bp):
AGCCATACAACAGGAAGCTTAAAAAGAATTATTAATCGGAAAGCTCATAAG
Found at i:7630298 original size:27 final size:28
Alignment explanation
Indices: 7630259--7630338 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 28
7630249 TAAATGTGGA
7630259 AGGGGATTGCTAAGTGCTGATCCCC-CCG
1 AGGGG-TTGCTAAGTGCTGATCCCCACCG
*
7630287 AGGGGTTGCTAAGTGCT-ATTCCCCTACCT
1 AGGGGTTGCTAAGTGCTGA-TCCCC-ACCG
7630316 ATTGGTGGTTGCTAAGTGCTGAT
1 A--GG-GGTTGCTAAGTGCTGAT
7630339 TCCACCGTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
26 1 0.02
27 17 0.39
28 5 0.11
29 3 0.07
31 2 0.05
32 15 0.34
33 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.30, T:0.30
Consensus pattern (28 bp):
AGGGGTTGCTAAGTGCTGATCCCCACCG
Found at i:7630488 original size:103 final size:102
Alignment explanation
Indices: 7630184--7630549 Score: 493
Period size: 102 Copynumber: 3.6 Consensus size: 102
7630174 TTGCATATAA
** * **
7630184 AGGGGTTGCTGTGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGACCCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
* *
7630249 TAAATGTGGAAGGGGATTGCTAAGTGCTGATCCCCCCG
66 TAAATGT-GAAGGGGGTTGCTAAGTGCTGATTCCCCCG
* *
7630287 AGGGGTTGCTAAGTGCT-ATTCCCCTACCTATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGACCCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
7630351 TAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCCG
66 TAAATGTG-AAGGGGGTTGCTAAGTGCTGATTCCCCCG
* *
7630389 AGGGGTTGCTAAGTGCTGATTCCCCGACCCATTTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
1 AGGGGTTGCTAAGTGCTGATTCCCCGACCCA-TTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
* * *
7630454 TGAAATGTGAAGGGGGTTACTAAGTGCTGATTCCCCCA
65 TTAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCCG
* *** ** * *
7630492 AGGGGTTGTTGTTTGCTGATTCCCCGATTCATTGGTGG-TGCTAAGTGCGGAATCCACC
1 AGGGGTTGCTAAGTGCTGATTCCCCGACCCATTGGTGGTTGCTAAGTGCTGATTCCACC
7630550 AACAACGGTT
Statistics
Matches: 238, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
101 19 0.08
102 102 0.43
103 78 0.33
104 39 0.16
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (102 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGACCCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
TAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:7640846 original size:6 final size:6
Alignment explanation
Indices: 7640835--7640869 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
7640825 CCATTTCTCT
*
7640835 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTT ATTTT
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTT
7640870 GGAGAAAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.71
Consensus pattern (6 bp):
ATTTTC
Found at i:7640924 original size:74 final size:71
Alignment explanation
Indices: 7640779--7640939 Score: 193
Period size: 74 Copynumber: 2.2 Consensus size: 71
7640769 TTTTCTGATT
* *
7640779 ATTTTCATTTTCATTTTGGAAAAACCATATTCATTTCCAAATGATTCCATTTCTCTATTTTCATT
1 ATTTTCATTTTTATTTTGGAAAAACCATATTCATTTCCAAATGATTCCATTTCTCCATTTTCA--
*
7640844 TTCATTTTC
64 TCCA-TTTC
*
7640853 ATTTTCATTTTTATTTTGGAGAAAATCATAATT-ATTTCCAAATGATTTCTCATTTCTCCATTTT
1 ATTTTCATTTTTATTTTGGA-AAAACCAT-ATTCATTTCCAAATGA-TTC-CATTTCTCCATTTT
7640917 CA-CCATTTC
62 CATCCATTTC
*
7640926 -TATTCATTTTTATT
1 ATTTTCATTTTTATT
7640940 CATTGATTCA
Statistics
Matches: 78, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
72 13 0.17
73 4 0.05
74 21 0.27
75 19 0.24
76 6 0.08
77 15 0.19
ACGTcount: A:0.26, C:0.17, G:0.04, T:0.52
Consensus pattern (71 bp):
ATTTTCATTTTTATTTTGGAAAAACCATATTCATTTCCAAATGATTCCATTTCTCCATTTTCATC
CATTTC
Found at i:7649168 original size:58 final size:53
Alignment explanation
Indices: 7649037--7649182 Score: 159
Period size: 54 Copynumber: 2.6 Consensus size: 53
7649027 ATACAAAACC
* * * *
7649037 ATATTATCATATTTTAAAAGTAAATTAACCGATCGATTAATATTTAAAAGATAA
1 ATATTATCATATTTT-AAAGTAAATTGATCGGTCGATTAATATTTAAAAGAAAA
*
7649091 ATATTATCATATTTATAAAGTAAATTGATCGGTCAGA-TAATCTTTAAAAGACAAAA
1 ATATTATCATATTT-TAAAGTAAATTGATCGGTC-GATTAATATTTAAAAG--AAAA
*
7649147 TGATATTATCATATTTGTAAAGTAAATTGGTCGGTC
1 --ATATTATCATATTT-TAAAGTAAATTGATCGGTC
7649183 TTTTAAAGAT
Statistics
Matches: 79, Mismatches: 7, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
54 41 0.52
55 3 0.04
56 3 0.04
58 32 0.41
ACGTcount: A:0.43, C:0.08, G:0.12, T:0.37
Consensus pattern (53 bp):
ATATTATCATATTTTAAAGTAAATTGATCGGTCGATTAATATTTAAAAGAAAA
Found at i:7651024 original size:50 final size:50
Alignment explanation
Indices: 7650959--7651058 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
7650949 TGGGGGTAGT
7650959 TCCGGCTTAGCAGTACCAACACTTGAGGAGCTATCATAACCAAATGGAGG
1 TCCGGCTTAGCAGTACCAACACTTGAGGAGCTATCATAACCAAATGGAGG
*
7651009 TCCGGCTTAGCAGTACCAACACTTGAGGAGCTATCGTAACCAAATGGAGG
1 TCCGGCTTAGCAGTACCAACACTTGAGGAGCTATCATAACCAAATGGAGG
7651059 CCTTGGCGGC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.31, C:0.24, G:0.25, T:0.20
Consensus pattern (50 bp):
TCCGGCTTAGCAGTACCAACACTTGAGGAGCTATCATAACCAAATGGAGG
Found at i:7652483 original size:58 final size:59
Alignment explanation
Indices: 7652396--7652508 Score: 176
Period size: 58 Copynumber: 1.9 Consensus size: 59
7652386 TCATAGATAT
* *
7652396 GTCGAGTTTTAAAGATAAAATTATATTATCATATTTG-AA-AAGTAAATTGATCGATTG
1 GTCGAGTTTTAAAGACAAAATGATATTATCATATTTGTAATAAGTAAATTGATCGATTG
*
7652453 GTCGATTTTTAAAAGACAAAATGATATTATCATATTTGTAATAAGTAAATTGATCG
1 GTCGAGTTTT-AAAGACAAAATGATATTATCATATTTGTAATAAGTAAATTGATCG
7652509 GTCGGTCTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
57 9 0.18
58 25 0.50
59 2 0.04
60 14 0.28
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.38
Consensus pattern (59 bp):
GTCGAGTTTTAAAGACAAAATGATATTATCATATTTGTAATAAGTAAATTGATCGATTG
Found at i:7652506 original size:29 final size:28
Alignment explanation
Indices: 7652413--7652506 Score: 79
Period size: 29 Copynumber: 3.3 Consensus size: 28
7652403 TTTAAAGATA
7652413 AAATT-ATATTATCATATTTG-AAAAGT
1 AAATTGATATTATCATATTTGTAAAAGT
* *
7652439 AAATTGATCGATTGGTCGAT-TTT-TAAAAGAC
1 AAATTGAT--ATT-ATC-ATATTTGTAAAAG-T
*
7652470 AAAATGATATTATCATATTTGTAATAAGT
1 AAATTGATATTATCATATTTGTAA-AAGT
7652499 AAATTGAT
1 AAATTGAT
7652507 CGGTCGGTCT
Statistics
Matches: 52, Mismatches: 6, Indels: 17
0.69 0.08 0.23
Matches are distributed among these distances:
26 5 0.10
27 4 0.08
28 5 0.10
29 16 0.31
30 13 0.25
31 9 0.17
ACGTcount: A:0.43, C:0.05, G:0.13, T:0.39
Consensus pattern (28 bp):
AAATTGATATTATCATATTTGTAAAAGT
Found at i:7652539 original size:56 final size:54
Alignment explanation
Indices: 7652402--7652542 Score: 167
Period size: 58 Copynumber: 2.5 Consensus size: 54
7652392 ATATGTCGAG
*
7652402 TTTTAAAGATAAAATTATATTATCATATTTGAAAAGTAAATTGATCGATTGGTCGA
1 TTTTAAAGATAAAA-TATATTATCATATTTGAAAAGTAAATTGATCGATCGGTC-A
* *
7652458 TTTTTAAAAGACAAAATGATATTATCATATTTGTAATAAGTAAATTGATCGGTCGGTC-
1 -TTTT-AAAGATAAAAT-ATATTATCATATTTG-AA-AAGTAAATTGATCGATCGGTCA
*
7652516 TTTTAAAGATAAAACTATGTTATCATA
1 TTTTAAAGATAAAA-TATATTATCATA
7652543 AATGAATGGG
Statistics
Matches: 74, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
56 19 0.26
57 10 0.14
58 24 0.32
59 2 0.03
60 19 0.26
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.39
Consensus pattern (54 bp):
TTTTAAAGATAAAATATATTATCATATTTGAAAAGTAAATTGATCGATCGGTCA
Found at i:7657948 original size:43 final size:43
Alignment explanation
Indices: 7657887--7658127 Score: 296
Period size: 43 Copynumber: 5.7 Consensus size: 43
7657877 TATGATTTCA
*
7657887 TGTAAGACCACGTCTGGGATGTTGGCATCGACTTGTGTTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGTTTACG
7657930 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGTTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGTTTACG
*
7657973 TGTAAGACCACGTCTGGAACGTTGGCATCGACTTGTGTTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGTTTACG
* * *
7658016 TGTAAGACCATGTCTGGGACATTGGCATCGTA-TT-TGATT-CG
1 TGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTGTGTTTACG
* * ** * *
7658057 TGTAAGACC-CTGTCTGGGACAG-TGGAATTGA-TATAAGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGACT-TGTGTTTACG
*
7658100 TGTAAGACCACGTTTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
7658128 TGTACGATAT
Statistics
Matches: 176, Mismatches: 14, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
40 2 0.01
41 27 0.15
42 9 0.05
43 136 0.77
44 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTGTTTACG
Found at i:7661660 original size:458 final size:458
Alignment explanation
Indices: 7660803--7661723 Score: 1565
Period size: 458 Copynumber: 2.0 Consensus size: 458
7660793 AGCTATGGTT
*
7660803 ATACACCTTGTAATCCCCAAATGACCTTATTGCCGTCGCGGCGTCGCTCCTTAGAGCTTACTGAT
1 ATACACCTTGTAATCCCCAAATGACCTTATCGCCGTCGCGGCGTCGCTCCTTAGAGCTTACTGAT
* *
7660868 TGTCGTTGTGGTGTTGCTCTACGAAACTTAATAGTCGTCAATATCGTCTTATCTCATATCAACCT
66 TGTCGTTGTGGTGTTGCTCTACGAAACTTAATACTCGTCAATATCATCTTATCTCATATCAACCT
7660933 TGATGCTCGAACACCAAAGTGTCCCCCAGAGCTTCGCCCATTACGGTTTGCTCCTAGCAATCCCA
131 TGATGCTCGAACACCAAAGTGTCCCCCAGAGCTTCGCCCATTACGGTTTGCTCCTAGCAATCCCA
* *
7660998 GATGGTGGAATCGTAATGGAATTTCAATTTCTTTTTTCCATATTCATTTGCCCATTCCTCCACTT
196 GATGGTGGAATCGTAATAGAATTTCAATTTCTTTTTTCCATATTCATCTGCCCATTCCTCCACTT
* * * *
7661063 ATCATTCTAATATTGATGCTCGAACACTGTAGTATCCCCTCTACAAGGCTTGGAGCTTCGTTTAT
261 AGCATCCTAATATTGATGCTCGAACACTATAGTATCCCCTCTACAAGGCTCGGAGCTTCGTTTAT
* * *
7661128 CATGATTTGCACTCAGCAATACTGTATTGCAGTATTTAACAGAATCACCCTTTTTCCCATCCTAA
326 CACGATTTGCACTCAGCAATACCGTATTGCAGTATTTAACAGAACCACCCTTTTTCCCATCCTAA
* *
7661193 CTTCATCTAGCTTGTCGATGATTCCCTTCCATATTTTAGAGACATTACATGCAAATTCATAAACT
391 CTTCATCTAGCTTGTCGATGATTCCCTTCCATATTTCAGAGACATTACATACAAATTCATAAACT
7661258 ACG
456 ACG
* * *
7661261 ATACACCTTGTAATCCCCAAATGACCTTATCGTCGTTGCGGTGTCGCTCCTTAGAGCTTACTGAT
1 ATACACCTTGTAATCCCCAAATGACCTTATCGCCGTCGCGGCGTCGCTCCTTAGAGCTTACTGAT
*
7661326 TGTCGTTGTGGTGTTGCTCTACGAAACTTAATAACT-GTCAATATCATTTTATCTCATATCAACC
66 TGTCGTTGTGGTGTTGCTCTACGAAACTTAAT-ACTCGTCAATATCATCTTATCTCATATCAACC
*
7661390 TTGATGCTCGAACACCAAAGTGTCCCCCAGAGTTTCGCCCATTACGGTTTGCTCCTAGCAATCCC
130 TTGATGCTCGAACACCAAAGTGTCCCCCAGAGCTTCGCCCATTACGGTTTGCTCCTAGCAATCCC
* * * *
7661455 GGATGGTGGAATCGTAATAGAATTTCAATTTCTTTTTTCCATATTCCTCTGCCTATTCCTTCACT
195 AGATGGTGGAATCGTAATAGAATTTCAATTTCTTTTTTCCATATTCATCTGCCCATTCCTCCACT
* *
7661520 TAGCATCCTAATATTGATGCTCGAACACTATAGTGTCCCCTCTGCAAGGCTCGGAGCTTCGTTTA
260 TAGCATCCTAATATTGATGCTCGAACACTATAGTATCCCCTCTACAAGGCTCGGAGCTTCGTTTA
* * *
7661585 TCACGGTTTGCACTCAGCAATACCGTATTGCTGTATTTAATAGAACCACCCTTTTTCCCATCCTA
325 TCACGATTTGCACTCAGCAATACCGTATTGCAGTATTTAACAGAACCACCCTTTTTCCCATCCTA
*
7661650 ACTTCATCTAGCTTGTCGATGATTCCCTTCCATATTTCATAGACATTACATACAAATTCATAAAC
390 ACTTCATCTAGCTTGTCGATGATTCCCTTCCATATTTCAGAGACATTACATACAAATTCATAAAC
7661715 TACG
455 TACG
7661719 ATACA
1 ATACA
7661724 ATGGCAGATA
Statistics
Matches: 433, Mismatches: 29, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
458 431 1.00
459 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (458 bp):
ATACACCTTGTAATCCCCAAATGACCTTATCGCCGTCGCGGCGTCGCTCCTTAGAGCTTACTGAT
TGTCGTTGTGGTGTTGCTCTACGAAACTTAATACTCGTCAATATCATCTTATCTCATATCAACCT
TGATGCTCGAACACCAAAGTGTCCCCCAGAGCTTCGCCCATTACGGTTTGCTCCTAGCAATCCCA
GATGGTGGAATCGTAATAGAATTTCAATTTCTTTTTTCCATATTCATCTGCCCATTCCTCCACTT
AGCATCCTAATATTGATGCTCGAACACTATAGTATCCCCTCTACAAGGCTCGGAGCTTCGTTTAT
CACGATTTGCACTCAGCAATACCGTATTGCAGTATTTAACAGAACCACCCTTTTTCCCATCCTAA
CTTCATCTAGCTTGTCGATGATTCCCTTCCATATTTCAGAGACATTACATACAAATTCATAAACT
ACG
Found at i:7665124 original size:18 final size:18
Alignment explanation
Indices: 7665101--7665135 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7665091 TTGTTTATCC
7665101 ACGGTACTATTCACGTAG
1 ACGGTACTATTCACGTAG
*
7665119 ACGGTACTATTTACGTA
1 ACGGTACTATTCACGTA
7665136 TACAGTAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (18 bp):
ACGGTACTATTCACGTAG
Found at i:7671188 original size:6 final size:6
Alignment explanation
Indices: 7671179--7671208 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
7671169 TAAAATTACT
*
7671179 AATTTA AATTTA AATTTA GATTTA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA
7671209 TAATAATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (6 bp):
AATTTA
Found at i:7671967 original size:30 final size:30
Alignment explanation
Indices: 7671895--7671967 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
7671885 GAAAGTCGAG
* *
7671895 TTCCTATATATAAAATTTTTATTGTGACCAT
1 TTCC-ATATATAGAATTCTTATTGTGACCAT
*
7671926 TTCCATATATAGAATTCTTATTTTGACCAT
1 TTCCATATATAGAATTCTTATTGTGACCAT
*
7671956 TTCCATTTATAG
1 TTCCATATATAG
7671968 GATTGACGGC
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
30 34 0.89
31 4 0.11
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.48
Consensus pattern (30 bp):
TTCCATATATAGAATTCTTATTGTGACCAT
Found at i:7676239 original size:25 final size:25
Alignment explanation
Indices: 7676211--7676273 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
7676201 ATAAGAGCCA
* *
7676211 TAATCAGGAAGTTCACAAAGAATTT
1 TAATCAGGAAGCTCACAAAGAACTT
* **
7676236 TAATCAGGAAGCTCACGAAGGCCTT
1 TAATCAGGAAGCTCACAAAGAACTT
7676261 TAATCAGG-AGCTC
1 TAATCAGGAAGCTC
7676274 CGAATAGCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
24 5 0.15
25 28 0.85
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.24
Consensus pattern (25 bp):
TAATCAGGAAGCTCACAAAGAACTT
Found at i:7676249 original size:49 final size:51
Alignment explanation
Indices: 7676155--7676250 Score: 119
Period size: 50 Copynumber: 1.9 Consensus size: 51
7676145 TCCTCTTTCA
*
7676155 AGCCATACAACAGGAAGCTTAAAAAGAGTTATTAATCGGAAAGCTCATAAG
1 AGCCATACAACAGGAAGCTTAAAAAGAATTATTAATCGGAAAGCTCATAAG
* *
7676206 AGCCATA-ATCAGGAAG-TTCACAAAGAATT-TTAATCAGG-AAGCTCA
1 AGCCATACAACAGGAAGCTT-AAAAAGAATTATTAATC-GGAAAGCTCA
7676251 CGAAGGCCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
49 15 0.38
50 18 0.45
51 7 0.17
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.21
Consensus pattern (51 bp):
AGCCATACAACAGGAAGCTTAAAAAGAATTATTAATCGGAAAGCTCATAAG
Found at i:7677658 original size:27 final size:28
Alignment explanation
Indices: 7677619--7677698 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 28
7677609 TAAATGTGGA
7677619 AGGGGATTGCTAAGTGCTGATCCCC-CCG
1 AGGGG-TTGCTAAGTGCTGATCCCCACCG
*
7677647 AGGGGTTGCTAAGTGCT-ATTCCCCTACCT
1 AGGGGTTGCTAAGTGCTGA-TCCCC-ACCG
7677676 ATTGGTGGTTGCTAAGTGCTGAT
1 A--GG-GGTTGCTAAGTGCTGAT
7677699 TCCACCGTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
26 1 0.02
27 17 0.39
28 5 0.11
29 3 0.07
31 2 0.05
32 15 0.34
33 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.30, T:0.30
Consensus pattern (28 bp):
AGGGGTTGCTAAGTGCTGATCCCCACCG
Found at i:7677848 original size:103 final size:102
Alignment explanation
Indices: 7677544--7677909 Score: 493
Period size: 102 Copynumber: 3.6 Consensus size: 102
7677534 TTGCATATAA
** * **
7677544 AGGGGTTGCTGTGTGCTGATTCCCCTATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGACCCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
* *
7677609 TAAATGTGGAAGGGGATTGCTAAGTGCTGATCCCCCCG
66 TAAATGT-GAAGGGGGTTGCTAAGTGCTGATTCCCCCG
* *
7677647 AGGGGTTGCTAAGTGCT-ATTCCCCTACCTATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGACCCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
7677711 TAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCCG
66 TAAATGTG-AAGGGGGTTGCTAAGTGCTGATTCCCCCG
* *
7677749 AGGGGTTGCTAAGTGCTGATTCCCCGACCCATTTGGTGGTTGCTAAGTGCTGATTCCACCGCATC
1 AGGGGTTGCTAAGTGCTGATTCCCCGACCCA-TTGGTGGTTGCTAAGTGCTGATTCCACCGTATT
* * *
7677814 TGAAATGTGAAGGGGGTTACTAAGTGCTGATTCCCCCA
65 TTAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCCG
* *** ** * *
7677852 AGGGGTTGTTGTTTGCTGATTCCCCGATTCATTGGTGG-TGCTAAGTGCGGAATCCACC
1 AGGGGTTGCTAAGTGCTGATTCCCCGACCCATTGGTGGTTGCTAAGTGCTGATTCCACC
7677910 AACAACGGTT
Statistics
Matches: 238, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
101 19 0.08
102 102 0.43
103 78 0.33
104 39 0.16
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (102 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGACCCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATTT
TAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:7685112 original size:103 final size:102
Alignment explanation
Indices: 7684932--7685146 Score: 315
Period size: 103 Copynumber: 2.1 Consensus size: 102
7684922 NNNNNNNNNN
* * * *
7684932 TGATTCCACCGTATTTTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTA
1 TGATTCCACCGCATCTGAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTA
7684997 AGTGCTGATTCCCCGACCCATTTGGTGGTTGCTAAGTGC
66 AGTGCTGATTCCCCGACCCA-TTGGTGG-TGCTAAGTGC
*
7685036 TGATTCCACCGCATCTGAAATGTG-AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTG
1 TGATTCCACCGCATCTGAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTA
* **
7685100 TGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGC
66 AGTGCTGATTCCCCGACCCATTGGTGGTGCTAAGTGC
* *
7685137 GGAATCCACC
1 TGATTCCACC
7685147 AACAACGGTT
Statistics
Matches: 101, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
101 18 0.18
102 7 0.07
103 55 0.54
104 21 0.21
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (102 bp):
TGATTCCACCGCATCTGAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTA
AGTGCTGATTCCCCGACCCATTGGTGGTGCTAAGTGC
Found at i:7688059 original size:6 final size:6
Alignment explanation
Indices: 7688048--7688082 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
7688038 CCATTTCTCT
*
7688048 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTT ATTTT
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTT
7688083 GGAGAAAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.71
Consensus pattern (6 bp):
ATTTTC
Found at i:7688137 original size:74 final size:71
Alignment explanation
Indices: 7687992--7688152 Score: 193
Period size: 74 Copynumber: 2.2 Consensus size: 71
7687982 TTTTCTGATT
* *
7687992 ATTTTCATTTTCATTTTGGAAAAACCATATTCATTTCCAAATGATTCCATTTCTCTATTTTCATT
1 ATTTTCATTTTTATTTTGGAAAAACCATATTCATTTCCAAATGATTCCATTTCTCCATTTTCA--
*
7688057 TTCATTTTC
64 TCCA-TTTC
*
7688066 ATTTTCATTTTTATTTTGGAGAAAATCATAATT-ATTTCCAAATGATTTCTCATTTCTCCATTTT
1 ATTTTCATTTTTATTTTGGA-AAAACCAT-ATTCATTTCCAAATGA-TTC-CATTTCTCCATTTT
7688130 CA-CCATTTC
62 CATCCATTTC
*
7688139 -TATTCATTTTTATT
1 ATTTTCATTTTTATT
7688153 CATTGATTCA
Statistics
Matches: 78, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
72 13 0.17
73 4 0.05
74 21 0.27
75 19 0.24
76 6 0.08
77 15 0.19
ACGTcount: A:0.26, C:0.17, G:0.04, T:0.52
Consensus pattern (71 bp):
ATTTTCATTTTTATTTTGGAAAAACCATATTCATTTCCAAATGATTCCATTTCTCCATTTTCATC
CATTTC
Found at i:7696390 original size:58 final size:53
Alignment explanation
Indices: 7696259--7696404 Score: 159
Period size: 54 Copynumber: 2.6 Consensus size: 53
7696249 ATACAAAACC
* * * *
7696259 ATATTATCATATTTTAAAAGTAAATTAACCGATCGATTAATATTTAAAAGATAA
1 ATATTATCATATTTT-AAAGTAAATTGATCGGTCGATTAATATTTAAAAGAAAA
*
7696313 ATATTATCATATTTATAAAGTAAATTGATCGGTCAGA-TAATCTTTAAAAGACAAAA
1 ATATTATCATATTT-TAAAGTAAATTGATCGGTC-GATTAATATTTAAAAG--AAAA
*
7696369 TGATATTATCATATTTGTAAAGTAAATTGGTCGGTC
1 --ATATTATCATATTT-TAAAGTAAATTGATCGGTC
7696405 TTTTAAAGAT
Statistics
Matches: 79, Mismatches: 7, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
54 41 0.52
55 3 0.04
56 3 0.04
58 32 0.41
ACGTcount: A:0.43, C:0.08, G:0.12, T:0.37
Consensus pattern (53 bp):
ATATTATCATATTTTAAAGTAAATTGATCGGTCGATTAATATTTAAAAGAAAA
Found at i:7699655 original size:58 final size:59
Alignment explanation
Indices: 7699568--7699680 Score: 176
Period size: 58 Copynumber: 1.9 Consensus size: 59
7699558 TCATAGATAT
* *
7699568 GTCGAGTTTTAAAGATAAAATTATATTATCATATTTG-AA-AAGTAAATTGATCGATTG
1 GTCGAGTTTTAAAGACAAAATGATATTATCATATTTGTAATAAGTAAATTGATCGATTG
*
7699625 GTCGATTTTTAAAAGACAAAATGATATTATCATATTTGTAATAAGTAAATTGATCG
1 GTCGAGTTTT-AAAGACAAAATGATATTATCATATTTGTAATAAGTAAATTGATCG
7699681 GTCGGTCTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
57 9 0.18
58 25 0.50
59 2 0.04
60 14 0.28
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.38
Consensus pattern (59 bp):
GTCGAGTTTTAAAGACAAAATGATATTATCATATTTGTAATAAGTAAATTGATCGATTG
Found at i:7699678 original size:29 final size:28
Alignment explanation
Indices: 7699585--7699678 Score: 79
Period size: 29 Copynumber: 3.3 Consensus size: 28
7699575 TTTAAAGATA
7699585 AAATT-ATATTATCATATTTG-AAAAGT
1 AAATTGATATTATCATATTTGTAAAAGT
* *
7699611 AAATTGATCGATTGGTCGAT-TTT-TAAAAGAC
1 AAATTGAT--ATT-ATC-ATATTTGTAAAAG-T
*
7699642 AAAATGATATTATCATATTTGTAATAAGT
1 AAATTGATATTATCATATTTGTAA-AAGT
7699671 AAATTGAT
1 AAATTGAT
7699679 CGGTCGGTCT
Statistics
Matches: 52, Mismatches: 6, Indels: 17
0.69 0.08 0.23
Matches are distributed among these distances:
26 5 0.10
27 4 0.08
28 5 0.10
29 16 0.31
30 13 0.25
31 9 0.17
ACGTcount: A:0.43, C:0.05, G:0.13, T:0.39
Consensus pattern (28 bp):
AAATTGATATTATCATATTTGTAAAAGT
Found at i:7699711 original size:56 final size:54
Alignment explanation
Indices: 7699574--7699714 Score: 167
Period size: 58 Copynumber: 2.5 Consensus size: 54
7699564 ATATGTCGAG
*
7699574 TTTTAAAGATAAAATTATATTATCATATTTGAAAAGTAAATTGATCGATTGGTCGA
1 TTTTAAAGATAAAA-TATATTATCATATTTGAAAAGTAAATTGATCGATCGGTC-A
* *
7699630 TTTTTAAAAGACAAAATGATATTATCATATTTGTAATAAGTAAATTGATCGGTCGGTC-
1 -TTTT-AAAGATAAAAT-ATATTATCATATTTG-AA-AAGTAAATTGATCGATCGGTCA
*
7699688 TTTTAAAGATAAAACTATGTTATCATA
1 TTTTAAAGATAAAA-TATATTATCATA
7699715 AATGAATGGG
Statistics
Matches: 74, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
56 19 0.26
57 10 0.14
58 24 0.32
59 2 0.03
60 19 0.26
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.39
Consensus pattern (54 bp):
TTTTAAAGATAAAATATATTATCATATTTGAAAAGTAAATTGATCGATCGGTCA
Found at i:7703477 original size:43 final size:42
Alignment explanation
Indices: 7703416--7703572 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 42
7703406 TATATGTTAT
* * *
7703416 CGTGTAAGACCACGTCTGGGGCGTCGGCATCGACTTGTGTTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TTGTGATTA
* **
7703459 CGTGTAAGACCATGTCTGGGATATTGGCATCGTATT-TGATT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCG-ATTGTGATTA
7703500 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TGTGATTA
* *
7703543 CATGTAAGACCACATCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
7703573 TGTACGAGTC
Statistics
Matches: 95, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
40 2 0.02
41 28 0.29
42 10 0.11
43 53 0.56
44 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATTGTGATTA
Found at i:7703561 original size:84 final size:84
Alignment explanation
Indices: 7703415--7703572 Score: 205
Period size: 84 Copynumber: 1.9 Consensus size: 84
7703405 ATATATGTTA
* * * **
7703415 TCGTGTAAGACCACGTCTGGGGCGTCGGCATCGACTTGTGTTTACGTGTAAGACCATGTCTGGGA
1 TCGTGTAAGACCACGTCTGGGACGTCGGCATCGACTTGTGATTACATGTAAGACCACATCTGGGA
*
7703480 TATTGGCATCGTATTTGAT
66 CATTGGCATCGTATTTGAT
7703499 TCGTGTAAGACC-CTGTCTGGGACAGT-GGCATCGA-TATGTGATTACATGTAAGACCACATCTG
1 TCGTGTAAGACCAC-GTCTGGGAC-GTCGGCATCGACT-TGTGATTACATGTAAGACCACATCTG
*
7703561 GGACGTTGGCAT
63 GGACATTGGCAT
7703573 TGTACGAGTC
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
83 2 0.03
84 60 0.94
85 2 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (84 bp):
TCGTGTAAGACCACGTCTGGGACGTCGGCATCGACTTGTGATTACATGTAAGACCACATCTGGGA
CATTGGCATCGTATTTGAT
Found at i:7703762 original size:16 final size:17
Alignment explanation
Indices: 7703733--7703764 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7703723 TGAATTGATG
7703733 ATATGAAGTTATGTGAA
1 ATATGAAGTTATGTGAA
7703750 ATATGAA-TTATGTGA
1 ATATGAAGTTATGTGA
7703765 TTGCATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATATGAAGTTATGTGAA
Found at i:7706352 original size:14 final size:14
Alignment explanation
Indices: 7706333--7706369 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
7706323 TCAAGCTACC
7706333 TCCACCTCCACCGA
1 TCCACCTCCACCGA
*
7706347 TCCACCTCCACCGG
1 TCCACCTCCACCGA
7706361 TCCACCTCC
1 TCCACCTCC
7706370 GGTCCTGCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.16, C:0.59, G:0.08, T:0.16
Consensus pattern (14 bp):
TCCACCTCCACCGA
Found at i:7707812 original size:25 final size:25
Alignment explanation
Indices: 7707778--7707830 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
7707768 TTTTTTTAAG
*
7707778 AATTGATTGTTTGTAATTAAATTCA
1 AATTAATTGTTTGTAATTAAATTCA
7707803 AATTAATTGTTTGTAATTAAATTCA
1 AATTAATTGTTTGTAATTAAATTCA
7707828 AAT
1 AAT
7707831 AAGTAATCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (25 bp):
AATTAATTGTTTGTAATTAAATTCA
Found at i:7715783 original size:22 final size:23
Alignment explanation
Indices: 7715753--7715802 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
7715743 ACCTACTTTC
* *
7715753 TTACTGTAGTAATTTTC-AGGTA
1 TTACAGTAGTAATTTTCGAGATA
7715775 TTACAGTAGTAATTTTCGAGATA
1 TTACAGTAGTAATTTTCGAGATA
7715798 TTACA
1 TTACA
7715803 ACAAGTGACC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 16 0.64
23 9 0.36
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGAGATA
Found at i:7716365 original size:18 final size:18
Alignment explanation
Indices: 7716306--7716365 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
7716296 AATCACACAG
* *
7716306 TTGCGAGCTCATCCAAAG
1 TTGCGAACTCATCCAAAT
*
7716324 TTACGAACTCATCCAAAT
1 TTGCGAACTCATCCAAAT
**
7716342 CCGCGAACTCATCCAAAT
1 TTGCGAACTCATCCAAAT
7716360 TTGCGA
1 TTGCGA
7716366 GCTTAGCAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (18 bp):
TTGCGAACTCATCCAAAT
Found at i:7720134 original size:22 final size:23
Alignment explanation
Indices: 7720081--7720136 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
7720071 CCCGTTTTTA
* * *
7720081 ATTAAAATTAAAATTATTTTTTT
1 ATTAAAATTAAAACTATATTGTT
*
7720104 AATAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
7720126 ATTAAAATTAA
1 ATTAAAATTAA
7720137 TTGTTAGTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:7720149 original size:16 final size:16
Alignment explanation
Indices: 7720112--7720151 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
7720102 TTAATAAAAT
* *
7720112 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
7720128 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
7720144 TAAAATTA
1 TAAAATTA
7720152 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:7720230 original size:59 final size:59
Alignment explanation
Indices: 7720162--7720331 Score: 304
Period size: 59 Copynumber: 2.9 Consensus size: 59
7720152 TCAAATTATT
*
7720162 AATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
* *
7720221 ATTTATTAATTGTATTAATTATTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
*
7720280 AATTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAA
1 AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAA
7720332 ACAAACTTGA
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 105 1.00
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (59 bp):
AATTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTAAATTTATCA
Found at i:7720432 original size:23 final size:24
Alignment explanation
Indices: 7720398--7720442 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
7720388 AAATAAACTT
7720398 AAAATAAAAAAT-TATTATATTTTA
1 AAAATAAAAAATATA-TATATTTTA
7720422 AAAAT-AAAAATATATATATTT
1 AAAATAAAAAATATATATATTT
7720443 AATATTTGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
AAAATAAAAAATATATATATTTTA
Found at i:7730340 original size:19 final size:18
Alignment explanation
Indices: 7730318--7730356 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7730308 ATTACAAAAC
*
7730318 AATTCAAAATAATTTTTAA
1 AATTCAAAAT-ATTTATAA
*
7730337 AATTCCAAATATTTATAA
1 AATTCAAAATATTTATAA
7730355 AA
1 AA
7730357 ATATCCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (18 bp):
AATTCAAAATATTTATAA
Done.