Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 24 of 203
Found at i:8065668 original size:17 final size:17
Alignment explanation
Indices: 8065646--8065678 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8065636 AATTTCGATT
8065646 CTTTTCTCACTCAATTC
1 CTTTTCTCACTCAATTC
*
8065663 CTTTTCTCACTGAATT
1 CTTTTCTCACTCAATT
8065679 TCGACCGTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.30, G:0.03, T:0.48
Consensus pattern (17 bp):
CTTTTCTCACTCAATTC
Found at i:8078402 original size:18 final size:16
Alignment explanation
Indices: 8078365--8078408 Score: 52
Period size: 18 Copynumber: 2.6 Consensus size: 16
8078355 TTTTCAAATT
8078365 TGTAATGTTTTATATTA
1 TGTAAT-TTTTATATTA
*
8078382 TGTTATTTTTATATATAA
1 TGTAATTTTTATAT-T-A
8078400 TGTAATTTT
1 TGTAATTTT
8078409 GTAACACATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 8 0.35
17 6 0.26
18 9 0.39
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (16 bp):
TGTAATTTTTATATTA
Found at i:8078530 original size:15 final size:17
Alignment explanation
Indices: 8078512--8078548 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
8078502 AATAAAAATC
8078512 ATATAAAATT-AT-TAA
1 ATATAAAATTAATATAA
*
8078527 ATATTAAATTAATATAA
1 ATATAAAATTAATATAA
8078544 ATATA
1 ATATA
8078549 TTTTTAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
15 9 0.50
16 2 0.11
17 7 0.39
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAAAATTAATATAA
Found at i:8102043 original size:22 final size:25
Alignment explanation
Indices: 8102018--8102063 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
8102008 TGACGAATTT
8102018 TGCACGTA-TTA-CT-TTTTACCTC
1 TGCACGTATTTACCTCTTTTACCTC
*
8102040 TGCAGGTATTTACCTCTTTTACCT
1 TGCACGTATTTACCTCTTTTACCT
8102064 TTTGTATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 7 0.35
23 3 0.15
24 2 0.10
25 8 0.40
ACGTcount: A:0.17, C:0.26, G:0.11, T:0.46
Consensus pattern (25 bp):
TGCACGTATTTACCTCTTTTACCTC
Found at i:8104446 original size:16 final size:16
Alignment explanation
Indices: 8104425--8104457 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8104415 ACAATATATA
8104425 AAACTTGTGTCTAAAT
1 AAACTTGTGTCTAAAT
8104441 AAACTTGTGTCTAAAT
1 AAACTTGTGTCTAAAT
8104457 A
1 A
8104458 GCTTTACCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (16 bp):
AAACTTGTGTCTAAAT
Found at i:8107807 original size:31 final size:31
Alignment explanation
Indices: 8107740--8107800 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
8107730 ATGAGTTTGA
8107740 AATGAACTATTATCGGTATGTACGCGAAATC
1 AATGAACTATTATCGGTATGTACGCGAAATC
8107771 AATGAACTATTA-CAGGTATGTACGCGAAAT
1 AATGAACTATTATC-GGTATGTACGCGAAAT
8107801 TCATGAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.28
Consensus pattern (31 bp):
AATGAACTATTATCGGTATGTACGCGAAATC
Found at i:8121101 original size:3 final size:3
Alignment explanation
Indices: 8121093--8121142 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
8121083 ACAAGAGCAA
*
8121093 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT AAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
8121141 GA
1 GA
8121143 GCATGAATCA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:8122070 original size:12 final size:12
Alignment explanation
Indices: 8122053--8122080 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8122043 AAAAAAATTA
8122053 ATTTAATTATTC
1 ATTTAATTATTC
8122065 ATTTAATTATTC
1 ATTTAATTATTC
8122077 ATTT
1 ATTT
8122081 GTTTTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (12 bp):
ATTTAATTATTC
Found at i:8126634 original size:37 final size:37
Alignment explanation
Indices: 8126584--8126657 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
8126574 TTCTCAGAGA
8126584 TAGAAAAGCAAGTAATTTCTTTGTAGGTTCAATATGT
1 TAGAAAAGCAAGTAATTTCTTTGTAGGTTCAATATGT
8126621 TAGAAAAGCAAGTAATTTCTTTGTAGGTTCAATATGT
1 TAGAAAAGCAAGTAATTTCTTTGTAGGTTCAATATGT
8126658 AGAGTGCTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (37 bp):
TAGAAAAGCAAGTAATTTCTTTGTAGGTTCAATATGT
Found at i:8128019 original size:15 final size:16
Alignment explanation
Indices: 8127995--8128027 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8127985 CTAAGATGTA
*
8127995 AATTGGATTGAAT-TG
1 AATTGAATTGAATATG
8128010 AATTGAATTGAATATG
1 AATTGAATTGAATATG
8128026 AA
1 AA
8128028 ATGTGTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.36
Consensus pattern (16 bp):
AATTGAATTGAATATG
Found at i:8139972 original size:73 final size:73
Alignment explanation
Indices: 8139895--8140058 Score: 163
Period size: 73 Copynumber: 2.2 Consensus size: 73
8139885 CTGTATAACG
** *
8139895 GGAAGCTCAAAAGAGCCATAT-CCAAGAAGCTCATTCGAGCCAATAACGGGTAA-CTCCGAAGAG
1 GGAAGCTCAAAAGAGCCATATACCAAGAAGCTCAAGCGAGCC-ATAACGAG-AAGCTCCGAAGAG
8139958 CCATTAATCA
64 CCATTAATCA
** * * * * * *
8139968 GGAAGCTTC-GGATAGCCATATATCTAGAAGTTCAAGCGAGCCATATCGAGAAGCTCCGGAGAGC
1 GGAAGC-TCAAAAGAGCCATATACCAAGAAGCTCAAGCGAGCCATAACGAGAAGCTCCGAAGAGC
8140032 CATTAATCA
65 CATTAATCA
*
8140041 AGAAGCTCACAAAGAGCC
1 GGAAGCTCA-AAAGAGCC
8140059 TTTAATCGGG
Statistics
Matches: 71, Mismatches: 15, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
72 4 0.06
73 45 0.63
74 22 0.31
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.17
Consensus pattern (73 bp):
GGAAGCTCAAAAGAGCCATATACCAAGAAGCTCAAGCGAGCCATAACGAGAAGCTCCGAAGAGCC
ATTAATCA
Found at i:8140047 original size:25 final size:24
Alignment explanation
Indices: 8139948--8140048 Score: 78
Period size: 25 Copynumber: 4.1 Consensus size: 24
8139938 TAACGGGTAA
* *
8139948 CTCCGAAGAGCCATTAATCAGGAAG
1 CTCCGGAGAGCCA-TAATCAAGAAG
* * *
8139973 CTTCGGATAGCCATATATCTAGAAG
1 CTCCGGAGAGCCATA-ATCAAGAAG
* ** * *
8139998 TTCAAGCGAGCCAT-ATCGAGAAG
1 CTCCGGAGAGCCATAATCAAGAAG
8140021 CTCCGGAGAGCCATTAATCAAGAAG
1 CTCCGGAGAGCCA-TAATCAAGAAG
8140046 CTC
1 CTC
8140049 ACAAAGAGCC
Statistics
Matches: 56, Mismatches: 17, Indels: 6
0.71 0.22 0.08
Matches are distributed among these distances:
23 17 0.30
24 3 0.05
25 36 0.64
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.20
Consensus pattern (24 bp):
CTCCGGAGAGCCATAATCAAGAAG
Found at i:8140095 original size:26 final size:25
Alignment explanation
Indices: 8140042--8140108 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 25
8140032 CATTAATCAA
* *
8140042 GAAGCTCACAAAGAGCCTTTAATCGG
1 GAAGCTCA-GAAGAGCCTATAATCGG
8140068 GAAGCTCGAGAAGAGCCATATAAT-GG
1 GAAGCTC-AGAAGAGCC-TATAATCGG
* *
8140094 GACGCTCATAAGAGC
1 GAAGCTCAGAAGAGC
8140109 TGCGGTGTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
25 7 0.20
26 22 0.63
27 6 0.17
ACGTcount: A:0.36, C:0.21, G:0.27, T:0.16
Consensus pattern (25 bp):
GAAGCTCAGAAGAGCCTATAATCGG
Found at i:8144338 original size:27 final size:29
Alignment explanation
Indices: 8144298--8144351 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
8144288 CTGTTTTGCG
*
8144298 TTTTGGGCTCAGTGGGCTAA-AGGTTTTT
1 TTTTAGGCTCAGTGGGCTAATAGGTTTTT
*
8144326 TTTTAGGCT-AGTGGGTTAATAGGTTT
1 TTTTAGGCTCAGTGGGCTAATAGGTTT
8144352 GGTGGGTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.17, C:0.07, G:0.31, T:0.44
Consensus pattern (29 bp):
TTTTAGGCTCAGTGGGCTAATAGGTTTTT
Found at i:8149193 original size:17 final size:17
Alignment explanation
Indices: 8149171--8149204 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8149161 ATCCACTAAT
*
8149171 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
8149188 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
8149205 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:8153832 original size:17 final size:17
Alignment explanation
Indices: 8153810--8153843 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8153800 ATCCACTAAT
*
8153810 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
8153827 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
8153844 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:8158491 original size:18 final size:17
Alignment explanation
Indices: 8158464--8158499 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 17
8158454 TTCGTTTTTC
8158464 TTTTCTTTTTGTTTCTG
1 TTTTCTTTTTGTTTCTG
8158481 TTTTGCTTTTTGTTTCTG
1 TTTT-CTTTTTGTTTCTG
8158499 T
1 T
8158500 GTTTTTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.00, C:0.11, G:0.14, T:0.75
Consensus pattern (17 bp):
TTTTCTTTTTGTTTCTG
Found at i:8161685 original size:28 final size:28
Alignment explanation
Indices: 8161653--8161737 Score: 120
Period size: 28 Copynumber: 3.0 Consensus size: 28
8161643 TATACGATAA
8161653 CAAGTTTAATTGAAATGCACTAAGTGTG
1 CAAGTTTAATTGAAATGCACTAAGTGTG
8161681 CAAGTTTAATTGAAATGCACTAAGTGTG
1 CAAGTTTAATTGAAATGCACTAAGTGTG
* *
8161709 CGAGTTTGATT-ATTAA-GCACTAAGTGTG
1 CAAGTTTAATTGA--AATGCACTAAGTGTG
8161737 C
1 C
8161738 GTACTTGTTA
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
27 1 0.02
28 50 0.94
29 2 0.04
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (28 bp):
CAAGTTTAATTGAAATGCACTAAGTGTG
Found at i:8162759 original size:21 final size:22
Alignment explanation
Indices: 8162675--8162822 Score: 131
Period size: 22 Copynumber: 6.5 Consensus size: 22
8162665 GTGTTATAAA
8162675 TTTAATGTATAATGCTATCCAAT
1 TTTAA-GTATAATGCTATCCAAT
* *
8162698 TTTGAGTATATTGATGCTGTCC-AT
1 TTTAAGTATA---ATGCTATCCAAT
8162722 TTTAATGTATAATGCTATCCAAT
1 TTTAA-GTATAATGCTATCCAAT
8162745 TTTAAGTAT-ATGCTATCCAAT
1 TTTAAGTATAATGCTATCCAAT
* * *
8162766 TTTGAGTATATTAATGATGTCC-AT
1 TTTAAG--TA-TAATGCTATCCAAT
*
8162790 TTTAATGTATAATGCTGTCCAAT
1 TTTAA-GTATAATGCTATCCAAT
*
8162813 TTTGAGTATA
1 TTTAAGTATA
8162823 TTTAAGCTGT
Statistics
Matches: 104, Mismatches: 10, Indels: 23
0.76 0.07 0.17
Matches are distributed among these distances:
21 17 0.16
22 32 0.31
23 21 0.20
24 13 0.12
25 21 0.20
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (22 bp):
TTTAAGTATAATGCTATCCAAT
Found at i:8162787 original size:68 final size:68
Alignment explanation
Indices: 8162675--8162823 Score: 244
Period size: 68 Copynumber: 2.2 Consensus size: 68
8162665 GTGTTATAAA
* *
8162675 TTTAATGTATAATGCTATCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGCTAT
1 TTTAA-GTAT-ATGCTATCCAATTTTGAGTATATTAATGATGTCCATTTTAATGTATAATGCTAT
8162740 CCAAT
64 CCAAT
*
8162745 TTTAAGTATATGCTATCCAATTTTGAGTATATTAATGATGTCCATTTTAATGTATAATGCTGTCC
1 TTTAAGTATATGCTATCCAATTTTGAGTATATTAATGATGTCCATTTTAATGTATAATGCTATCC
8162810 AAT
66 AAT
*
8162813 TTTGAGTATAT
1 TTTAAGTATAT
8162824 TTAAGCTGTC
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
68 66 0.88
69 4 0.05
70 5 0.07
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.45
Consensus pattern (68 bp):
TTTAAGTATATGCTATCCAATTTTGAGTATATTAATGATGTCCATTTTAATGTATAATGCTATCC
AAT
Found at i:8162811 original size:47 final size:47
Alignment explanation
Indices: 8162711--8162905 Score: 188
Period size: 47 Copynumber: 4.2 Consensus size: 47
8162701 GAGTATATTG
* * *
8162711 ATGCTGTCC-ATTTT-AATGTA-TAATGCTATCCAATTTTAA-GTAT-
1 ATGCTGTCCAATTTTGAGTATATTAATGCTGTCCAA-TTTAATGTATA
* * *
8162754 ATGCTATCCAATTTTGAGTATATTAATGATGTCCATTTTAATGTATA
1 ATGCTGTCCAATTTTGAGTATATTAATGCTGTCCAATTTAATGTATA
* *
8162801 ATGCTGTCCAATTTTGAGTATATTTAA-GCTGTCTAATTTGATGTATA
1 ATGCTGTCCAATTTTGAGTATA-TTAATGCTGTCCAATTTAATGTATA
* * * * * *
8162848 ATGTTGTCC-ATTTAGAGCATATTATTGCTGTCCAATTTGATGAATA
1 ATGCTGTCCAATTTTGAGTATATTAATGCTGTCCAATTTAATGTATA
8162894 ATTGCTGTCCAA
1 A-TGCTGTCCAA
8162906 AACAGGGTTG
Statistics
Matches: 125, Mismatches: 18, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
43 8 0.06
44 5 0.04
45 12 0.10
46 43 0.34
47 52 0.42
48 5 0.04
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.43
Consensus pattern (47 bp):
ATGCTGTCCAATTTTGAGTATATTAATGCTGTCCAATTTAATGTATA
Found at i:8162899 original size:23 final size:23
Alignment explanation
Indices: 8162673--8162905 Score: 119
Period size: 22 Copynumber: 10.1 Consensus size: 23
8162663 TTGTGTTATA
* *
8162673 AATTTAATGTATAA-TGCTATCC
1 AATTTGATGTATAATTGCTGTCC
*
8162695 AATTTTGA-GTATATTGATGCTGTCC
1 AA-TTTGATGTATAAT--TGCTGTCC
* * *
8162720 ATTTTAATGTATAA-TGCTATCC
1 AATTTGATGTATAATTGCTGTCC
* * *
8162742 AATTTTAAGTAT-A-TGCTATCC
1 AATTTGATGTATAATTGCTGTCC
* *
8162763 AATTTTGA-GTATATTAATGATGTCC
1 AA-TTTGATGTATA--ATTGCTGTCC
* *
8162788 ATTTTAATGTATAA-TGCTGTCC
1 AATTTGATGTATAATTGCTGTCC
* *
8162810 AATTTTGA-GTATATTTAAGCTGTCT
1 AA-TTTGATGTATAATT--GCTGTCC
*
8162835 AATTTGATGTATAA-TGTTGTCC
1 AATTTGATGTATAATTGCTGTCC
*
8162857 -ATTTAGA-GCATATTATTGCTGTCC
1 AATTT-GATG--TATAATTGCTGTCC
*
8162881 AATTTGATGAATAATTGCTGTCC
1 AATTTGATGTATAATTGCTGTCC
8162904 AA
1 AA
8162906 AACAGGGTTG
Statistics
Matches: 162, Mismatches: 27, Indels: 43
0.70 0.12 0.19
Matches are distributed among these distances:
21 20 0.12
22 47 0.29
23 28 0.17
24 24 0.15
25 43 0.27
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.43
Consensus pattern (23 bp):
AATTTGATGTATAATTGCTGTCC
Found at i:8167474 original size:30 final size:30
Alignment explanation
Indices: 8167414--8167476 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
8167404 ATTCAAAAAT
*
8167414 AAATTATAAAAATTATTTTTAAAAAGTTAA
1 AAATTATAAAAATTATTTTTAAAAACTTAA
* *
8167444 AAATTATAAAAATTATTTTTTATAACTTAA
1 AAATTATAAAAATTATTTTTAAAAACTTAA
8167474 AAA
1 AAA
8167477 ATAATTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (30 bp):
AAATTATAAAAATTATTTTTAAAAACTTAA
Found at i:8167580 original size:31 final size:32
Alignment explanation
Indices: 8167520--8167580 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
8167510 ACAAAATTAA
* *
8167520 AAAACATTAATTTTAAAAATTAAAAGAGATAG
1 AAAACATTAAATTTAAAAAGTAAAAGAGATAG
8167552 AAAA-ATTAAATTT-AAAAGTAAAATGAGAT
1 AAAACATTAAATTTAAAAAGTAAAA-GAGAT
8167581 TTTGGGGGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 9 0.35
31 13 0.50
32 4 0.15
ACGTcount: A:0.61, C:0.02, G:0.10, T:0.28
Consensus pattern (32 bp):
AAAACATTAAATTTAAAAAGTAAAAGAGATAG
Found at i:8170059 original size:11 final size:10
Alignment explanation
Indices: 8170040--8170073 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
8170030 TATTTTAAGC
8170040 TTTTT-TTAA
1 TTTTTATTAA
8170049 TTTTTAATTAA
1 TTTTT-ATTAA
8170060 TTTTTATTAA
1 TTTTTATTAA
8170070 TTTT
1 TTTT
8170074 ATCCTTAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 5 0.22
10 9 0.39
11 9 0.39
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTTTATTAA
Found at i:8177722 original size:10 final size:10
Alignment explanation
Indices: 8177699--8177740 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
8177689 TTGATCGCTA
8177699 AAAAACTTAT
1 AAAAACTTAT
*
8177709 -AAAATTTAT
1 AAAAACTTAT
8177718 AAAAA-TTAAT
1 AAAAACTT-AT
8177728 AAAAACTTAT
1 AAAAACTTAT
8177738 AAA
1 AAA
8177741 TATTACAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
9 10 0.36
10 16 0.57
11 2 0.07
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (10 bp):
AAAAACTTAT
Found at i:8177740 original size:29 final size:30
Alignment explanation
Indices: 8177699--8177757 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
8177689 TTGATCGCTA
*
8177699 AAAAACTTATAAA-ATTTATAAAAAT-TAAT
1 AAAAACTTATAAATA-TTACAAAAATCTAAT
8177728 AAAAACTTATAAATATTACAAAAATCTAAT
1 AAAAACTTATAAATATTACAAAAATCTAAT
8177758 GAATGTAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 22 0.81
30 5 0.19
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (30 bp):
AAAAACTTATAAATATTACAAAAATCTAAT
Found at i:8177848 original size:19 final size:19
Alignment explanation
Indices: 8177824--8177875 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
8177814 ATAAAAAAAT
8177824 TATTAACAATTAT-TAAACA
1 TATTAA-AATTATATAAACA
*
8177843 TATTAAAATTTATATAAACT
1 TATTAAAA-TTATATAAACA
*
8177863 TATAAAAATTATA
1 TATTAAAATTATA
8177876 AAAAATCATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 2 0.07
19 15 0.52
20 12 0.41
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (19 bp):
TATTAAAATTATATAAACA
Found at i:8177879 original size:10 final size:10
Alignment explanation
Indices: 8177767--8177888 Score: 59
Period size: 10 Copynumber: 12.1 Consensus size: 10
8177757 TGAATGTAAT
* *
8177767 AAATTTTAAT
1 AAATTATAAA
8177777 AAATTATAAAA
1 AAATTAT-AAA
* **
8177788 AAATCATTTA
1 AAATTATAAA
*
8177798 AAATTTTACAA
1 AAATTATA-AA
*
8177809 AAATAATAAAA
1 AAATTAT-AAA
*
8177820 AAATTATTAA
1 AAATTATAAA
* *
8177830 CAATTATTAA
1 AAATTATAAA
* *
8177840 ACA-TATTAA
1 AAATTATAAA
* *
8177849 AATTTATATA
1 AAATTATAAA
*
8177859 AACTTAT-AA
1 AAATTATAAA
8177868 AAATTATAAA
1 AAATTATAAA
*
8177878 AAATCATAAA
1 AAATTATAAA
8177888 A
1 A
8177889 GCTTGAATTG
Statistics
Matches: 83, Mismatches: 24, Indels: 10
0.71 0.21 0.09
Matches are distributed among these distances:
9 14 0.17
10 46 0.55
11 22 0.27
12 1 0.01
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (10 bp):
AAATTATAAA
Found at i:8181145 original size:10 final size:10
Alignment explanation
Indices: 8181130--8181223 Score: 68
Period size: 10 Copynumber: 9.3 Consensus size: 10
8181120 CTAGTTCATG
8181130 TTTTTATAAT
1 TTTTTATAAT
8181140 TTTTTATAAT
1 TTTTTATAAT
*
8181150 TTTATATCAA-
1 TTTTTAT-AAT
*
8181160 TTTTAAT-AT
1 TTTTTATAAT
* *
8181169 TTTTAATAAG
1 TTTTTATAAT
**
8181179 TTTTTATTCT
1 TTTTTATAAT
8181189 TTTCTTATAAT
1 TTT-TTATAAT
*
8181200 TTTTT-TAGAA
1 TTTTTATA-AT
8181210 TTTTTATATAT
1 TTTTTATA-AT
8181221 TTT
1 TTT
8181224 CATAAAATTT
Statistics
Matches: 65, Mismatches: 13, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
8 1 0.02
9 9 0.14
10 39 0.60
11 16 0.25
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:8181305 original size:12 final size:12
Alignment explanation
Indices: 8181288--8181312 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8181278 TCTTTTAGAT
8181288 TTATTATAGAGC
1 TTATTATAGAGC
8181300 TTATTATAGAGC
1 TTATTATAGAGC
8181312 T
1 T
8181313 GTCATATGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TTATTATAGAGC
Found at i:8183242 original size:6 final size:6
Alignment explanation
Indices: 8183208--8183245 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
8183198 TGCCTGTGCC
8183208 TGCGTG TGCGTG TGCGTG TGCGTG TGCGTG TGCGTG TG
1 TGCGTG TGCGTG TGCGTG TGCGTG TGCGTG TGCGTG TG
8183246 TGTTGCACCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.00, C:0.16, G:0.50, T:0.34
Consensus pattern (6 bp):
TGCGTG
Found at i:8183507 original size:45 final size:45
Alignment explanation
Indices: 8183443--8183566 Score: 239
Period size: 45 Copynumber: 2.7 Consensus size: 45
8183433 GTACTTGGCC
8183443 GTTATCGTTTATAAACAGCATAAACTGCTAATAGTTCTTGAAAAT
1 GTTATCGTTTATAAACAGCATAAACTGCTAATAGTTCTTGAAAAT
8183488 GTTATCGTTTATAAACAGCATAAACTGCTAATAGTTCTTGAAAAT
1 GTTATCGTTTATAAACAGCATAAACTGCTAATAGTTCTTGAAAAT
8183533 GTTATCGTTTATAAACAGCATAAACTGCCTAATA
1 GTTATCGTTTATAAACAGCATAAACTG-CTAATA
8183567 TAATTTATTC
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
45 72 0.92
46 6 0.08
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.35
Consensus pattern (45 bp):
GTTATCGTTTATAAACAGCATAAACTGCTAATAGTTCTTGAAAAT
Found at i:8185532 original size:136 final size:135
Alignment explanation
Indices: 8185287--8185558 Score: 517
Period size: 136 Copynumber: 2.0 Consensus size: 135
8185277 TAAATTCTAA
8185287 TATGGAAACAAGTAAAGAGTCCTGCTTGTGTCTTTTAAATGTACTTGATACAATAAGTATTTTGA
1 TATGGAAACAAGTAAAGAGTCCTGCTTGTGTCTTTTAAATGTACTTGATACAATAAGTATTTTGA
*
8185352 AATCTTAGATGGACCTTTTAAATTTGACCCAAACCTAAATAAAACCATTTCCGAACAAAGCATTT
66 AATCTTAGATGGACCTTTTAAATTTGACCCAAACCTAAACAAAACCATTTCCGAACAAAGCATTT
8185417 GGATT
131 GGATT
*
8185422 TATGGAAACAAGTAAATAGTCCTGCTTGTGTCTTTTAAATGTACTTGATACAATTAAGTATTTTG
1 TATGGAAACAAGTAAAGAGTCCTGCTTGTGTCTTTTAAATGTACTTGATACAA-TAAGTATTTTG
8185487 AAATCTTAGATGGACCTTTTAAATTTGACCCAAACCTAAACAAAACCATTTCCGAACAAAGCATT
65 AAATCTTAGATGGACCTTTTAAATTTGACCCAAACCTAAACAAAACCATTTCCGAACAAAGCATT
8185552 TGGATT
130 TGGATT
8185558 T
1 T
8185559 TGAAATCCAA
Statistics
Matches: 134, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
135 52 0.39
136 82 0.61
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (135 bp):
TATGGAAACAAGTAAAGAGTCCTGCTTGTGTCTTTTAAATGTACTTGATACAATAAGTATTTTGA
AATCTTAGATGGACCTTTTAAATTTGACCCAAACCTAAACAAAACCATTTCCGAACAAAGCATTT
GGATT
Found at i:8189273 original size:28 final size:28
Alignment explanation
Indices: 8189204--8189273 Score: 131
Period size: 28 Copynumber: 2.5 Consensus size: 28
8189194 TAATGTTTTG
*
8189204 AAATTTAAAATTTCAATAATAAAAACAT
1 AAATTTAAAATTTTAATAATAAAAACAT
8189232 AAATTTAAAATTTTAATAATAAAAACAT
1 AAATTTAAAATTTTAATAATAAAAACAT
8189260 AAATTTAAAATTTT
1 AAATTTAAAATTTT
8189274 TTAAAGGGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (28 bp):
AAATTTAAAATTTTAATAATAAAAACAT
Found at i:8195574 original size:34 final size:34
Alignment explanation
Indices: 8195531--8195597 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
8195521 AGTGTCGGCC
8195531 ATCTGCTACATAACAC-CAAAAAAATAATTTTTTT
1 ATCTGCTACATAACACTC-AAAAAATAATTTTTTT
*
8195565 ATCTGCTACATAGCACTCAAAAAATAATTTTTT
1 ATCTGCTACATAACACTCAAAAAATAATTTTTT
8195598 ATACTTGGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 30 0.97
35 1 0.03
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.36
Consensus pattern (34 bp):
ATCTGCTACATAACACTCAAAAAATAATTTTTTT
Found at i:8205646 original size:70 final size:71
Alignment explanation
Indices: 8205559--8205702 Score: 272
Period size: 70 Copynumber: 2.0 Consensus size: 71
8205549 CATTTATTTG
8205559 TTAAAATTTAATCTTTTTATTGGATTAAACAAAATTATAGGGAAAATAATGAAAACC-TTTTTTA
1 TTAAAATTTAATCTTTTTATTGGATTAAACAAAATTATAGGGAAAATAATGAAAACCTTTTTTTA
8205623 GTTTCT
66 GTTTCT
*
8205629 TTAAAATTTAATCTTTTTATTGGATTAAACAAAATTATAGGGAAATTAATGAAAACCTTTTTTTA
1 TTAAAATTTAATCTTTTTATTGGATTAAACAAAATTATAGGGAAAATAATGAAAACCTTTTTTTA
8205694 GTTTCT
66 GTTTCT
8205700 TTA
1 TTA
8205703 TTTTTTAACA
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
70 56 0.78
71 16 0.22
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (71 bp):
TTAAAATTTAATCTTTTTATTGGATTAAACAAAATTATAGGGAAAATAATGAAAACCTTTTTTTA
GTTTCT
Found at i:8207592 original size:21 final size:22
Alignment explanation
Indices: 8207544--8207595 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
8207534 CACCATTGTT
8207544 TCTAATCTC-ACTGCTACAGTA
1 TCTAATCTCAACTGCTACAGTA
*
8207565 TCCAATCTCAAC-GCTACAGTAA
1 TCTAATCTCAACTGCTACAGT-A
8207587 T-TAATCTCA
1 TCTAATCTCA
8207596 CTACAACCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.33, C:0.29, G:0.08, T:0.31
Consensus pattern (22 bp):
TCTAATCTCAACTGCTACAGTA
Found at i:8213173 original size:209 final size:210
Alignment explanation
Indices: 8212801--8213223 Score: 679
Period size: 209 Copynumber: 2.0 Consensus size: 210
8212791 AACCATATAA
* * * *
8212801 ATGTTGTCTCGGGGTACAAACAAACTAGACCAAGAGCTTTAAACTAGTAATTGTTGTCTGGACGC
1 ATGTTGTCTCGAGGTACAAACAAACTAGACCAAGAGCTTTAAACAAATAATTGTTGTCTAGACGC
*
8212866 CAAGAAAAACAATCATGCGAAATTCTTAACAAGAAGTCCTCATTCATACCTCTTCATGAATTTTA
66 CAAGAAAAACAATCATGCAAAATTCTTAACAAGAAGTCCTCATTCATACCTCTTCATGAATTTTA
* * *
8212931 TCCATTAGCAACTACTTTCTCTAAGAGCAATTAGAACTCGATTTTTCGCAACAATTTTGAGAAGC
131 TCCATTAGCAACTACTTTCTCTAAAAACAATTAGAACTCGATTTTTCGCAACAATTTTGAGAAAC
8212996 TCTTCATCTATGATT
196 TCTTCATCTATGATT
* *
8213011 ATGTTGTCTTGAGGTACAAACGAACTAGACCAAGAGCTTTAAACAAATAATTGTTGTCTAGACGC
1 ATGTTGTCTCGAGGTACAAACAAACTAGACCAAGAGCTTTAAACAAATAATTGTTGTCTAGACGC
* **
8213076 CAAGGAAAACAAT-ATGCAAAATTCTTAAC-AGAAAGTCCTCATTTGTACCTCTTCATGAATTTT
66 CAAGAAAAACAATCATGCAAAATTCTTAACAAG-AAGTCCTCATTCATACCTCTTCATGAATTTT
* *
8213139 ATCCATTAGCAATTACTTTCTCTAAAAACAATTAGAACTCGATTTTTCGCAACAATTTTTAGAAA
130 ATCCATTAGCAACTACTTTCTCTAAAAACAATTAGAACTCGATTTTTCGCAACAATTTTGAGAAA
*
8213204 CTTTTCATCTATGATT
195 CTCTTCATCTATGATT
8213220 ATGT
1 ATGT
8213224 GGAAGATTAC
Statistics
Matches: 196, Mismatches: 16, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
208 2 0.01
209 123 0.63
210 71 0.36
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (210 bp):
ATGTTGTCTCGAGGTACAAACAAACTAGACCAAGAGCTTTAAACAAATAATTGTTGTCTAGACGC
CAAGAAAAACAATCATGCAAAATTCTTAACAAGAAGTCCTCATTCATACCTCTTCATGAATTTTA
TCCATTAGCAACTACTTTCTCTAAAAACAATTAGAACTCGATTTTTCGCAACAATTTTGAGAAAC
TCTTCATCTATGATT
Found at i:8213591 original size:10 final size:9
Alignment explanation
Indices: 8213564--8213635 Score: 54
Period size: 9 Copynumber: 7.4 Consensus size: 9
8213554 ATTATTTTTT
8213564 AAATATAAA
1 AAATATAAA
*
8213573 AAATTTAAA
1 AAATATAAA
8213582 AAAGTATAAA
1 AAA-TATAAA
* *
8213592 AATTATTTAA
1 AAATA-TAAA
*
8213602 AAATAAAAA
1 AAATATAAA
8213611 AAAGTATTAAA
1 AAA-TA-TAAA
*
8213622 AATTATAAA
1 AAATATAAA
8213631 TAAAT
1 -AAAT
8213636 TTTAATATTT
Statistics
Matches: 48, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
9 22 0.46
10 21 0.44
11 5 0.10
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (9 bp):
AAATATAAA
Found at i:8213640 original size:20 final size:18
Alignment explanation
Indices: 8213564--8213640 Score: 73
Period size: 19 Copynumber: 4.0 Consensus size: 18
8213554 ATTATTTTTT
*
8213564 AAATATAAAAAATTTAAA
1 AAATATAAAAAATTTTAA
*
8213582 AAAGTATAAAAATTATTTAA
1 AAA-TATAAAAAAT-TTTAA
* *
8213602 AAATAAAAAAAAGTATTAA
1 AAATATAAAAAA-TTTTAA
8213621 AAATTATAAATAAATTTTAA
1 AAA-TATAAA-AAATTTTAA
8213641 TATTTTTCAA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
18 3 0.06
19 23 0.49
20 18 0.38
21 3 0.06
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (18 bp):
AAATATAAAAAATTTTAA
Found at i:8217498 original size:129 final size:129
Alignment explanation
Indices: 8217266--8217522 Score: 424
Period size: 129 Copynumber: 2.0 Consensus size: 129
8217256 TTATAGGGTC
* * *
8217266 ACAGTTATTGACCCTGGATTTTGCTTGTAATTGCCGGTTTGCTTCAGACTGACAGTTCCTATCTG
1 ACAGTTATTGACCCAGGACTTTGCTCGTAATTGCCGGTTTGCTTCAGACTGACAGTTCCTATCTG
*
8217331 ATTGTTCAATTGGCTGGAGTAAGGGCAGGGCCTGTTGATCAATGATGACAGCATGGTTATGACT
66 ATTGTTCAATTGGCTGGAGTAAGGGCAGGGCCTGTTGATCAATAATGACAGCATGGTTATGACT
* * *
8217395 ACAGTTATTGACCCAGGACTTTGCTCGTAATTGCTGGTTTTCTTCAGGCTGACAGTTCCTATCTG
1 ACAGTTATTGACCCAGGACTTTGCTCGTAATTGCCGGTTTGCTTCAGACTGACAGTTCCTATCTG
* * *
8217460 ATTGTTCAATTGGCTGGGGTAGGGGCAGGGCCTTTTGATCAATAATGACAGCATGGTTATGAC
66 ATTGTTCAATTGGCTGGAGTAAGGGCAGGGCCTGTTGATCAATAATGACAGCATGGTTATGAC
8217523 CAGGTTTTCT
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
129 118 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.34
Consensus pattern (129 bp):
ACAGTTATTGACCCAGGACTTTGCTCGTAATTGCCGGTTTGCTTCAGACTGACAGTTCCTATCTG
ATTGTTCAATTGGCTGGAGTAAGGGCAGGGCCTGTTGATCAATAATGACAGCATGGTTATGACT
Found at i:8221340 original size:39 final size:39
Alignment explanation
Indices: 8221279--8221415 Score: 175
Period size: 39 Copynumber: 3.5 Consensus size: 39
8221269 TGTATAGAGA
*
8221279 ACAAGTGCATTCTGCTCTTTGTATCTCATATTGTAGGGG
1 ACAACTGCATTCTGCTCTTTGTATCTCATATTGTAGGGG
* * *
8221318 ACAACTGCATTCTGCTCCTTGTATCTCAGATTGTAAGGG
1 ACAACTGCATTCTGCTCTTTGTATCTCATATTGTAGGGG
* * *
8221357 ACGATTGCATTCTGCTTTTTGTATCTCATATTGTAGGGG
1 ACAACTGCATTCTGCTCTTTGTATCTCATATTGTAGGGG
** * *
8221396 ATGATTGCCTTCTGCTCTTT
1 ACAACTGCATTCTGCTCTTT
8221416 ATGTGTAATA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (39 bp):
ACAACTGCATTCTGCTCTTTGTATCTCATATTGTAGGGG
Found at i:8225747 original size:3 final size:3
Alignment explanation
Indices: 8225739--8225764 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8225729 CACTAATAAG
8225739 AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AG
8225765 CAGCAGCAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:8230921 original size:20 final size:20
Alignment explanation
Indices: 8230896--8230935 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8230886 TGGGTGGACA
*
8230896 AGTTAACTTGCCACATCAGT
1 AGTTAACTTACCACATCAGT
8230916 AGTTAACTTACCACATCAGT
1 AGTTAACTTACCACATCAGT
8230936 GACACCAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (20 bp):
AGTTAACTTACCACATCAGT
Found at i:8237271 original size:67 final size:67
Alignment explanation
Indices: 8237159--8237285 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 67
8237149 TTTATATTAC
* *
8237159 AGGGGATTTAGCCTAGACTAGTAATACCGTTGTAAGAAATGAGGTTCGCGGAAGTGTGCTCTCTT
1 AGGGGATTTAGCCTAGACTAGTAATACCGCTGTAAGAAATGAGGTTCGCGGAAGTATGCTCTCTT
8237224 GT
66 GT
* * * *
8237226 AGGGGATTTAGCCTGGACTGGTAAT-CTCGCTGTAAGAAATTAGGTTCGCGGGAGTATGCT
1 AGGGGATTTAGCCTAGACTAGTAATAC-CGCTGTAAGAAATGAGGTTCGCGGAAGTATGCT
8237286 GTGTGCATAT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 1 0.02
67 52 0.98
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.29
Consensus pattern (67 bp):
AGGGGATTTAGCCTAGACTAGTAATACCGCTGTAAGAAATGAGGTTCGCGGAAGTATGCTCTCTT
GT
Found at i:8244067 original size:44 final size:45
Alignment explanation
Indices: 8243982--8244075 Score: 122
Period size: 44 Copynumber: 2.1 Consensus size: 45
8243972 TAATATAATT
*
8243982 TTCATAAAAATTAAATGATAAACATTTCATTTATGAATTATGATA
1 TTCATAAAAATTAAATGATAAACATTTCATATATGAATTATGATA
**
8244027 TTCAT-AAAATTAAATGAT-AA-ATTTCATATACTGTTTTTATGATA
1 TTCATAAAAATTAAATGATAAACATTTCATATA-TG-AATTATGATA
8244071 TTCAT
1 TTCAT
8244076 TTTATTTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
42 9 0.20
43 4 0.09
44 26 0.59
45 5 0.11
ACGTcount: A:0.43, C:0.07, G:0.06, T:0.44
Consensus pattern (45 bp):
TTCATAAAAATTAAATGATAAACATTTCATATATGAATTATGATA
Found at i:8244074 original size:22 final size:22
Alignment explanation
Indices: 8244049--8244092 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
8244039 AATGATAAAT
8244049 TTCA-TATACTGTTTTTATGATA
1 TTCATTATA-TGTTTTTATGATA
* *
8244071 TTCATTTTATTTTTTTATGATA
1 TTCATTATATGTTTTTATGATA
8244093 CATATCATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.61
Consensus pattern (22 bp):
TTCATTATATGTTTTTATGATA
Found at i:8254977 original size:19 final size:19
Alignment explanation
Indices: 8254955--8255018 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
8254945 AATATTACGG
8254955 AAATATTATTTTATAATTA
1 AAATATTATTTTATAATTA
* *
8254974 AAATA-AATTATA-ATATTA
1 AAATATTATTTTATA-ATTA
8254992 CGGAAATATTATTTTATAATTA
1 ---AAATATTATTTTATAATTA
8255014 AAATA
1 AAATA
8255019 AATTATATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
17 1 0.03
18 9 0.26
19 10 0.29
21 5 0.14
22 9 0.26
23 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.44
Consensus pattern (19 bp):
AAATATTATTTTATAATTA
Found at i:8254984 original size:21 final size:21
Alignment explanation
Indices: 8254959--8255029 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
8254949 TTACGGAAAT
*
8254959 ATTATTTTATAATTAAAATAA
1 ATTATATTATAATTAAAATAA
* * ***
8254980 ATTATAATATTACGGAAAT--
1 ATTATATTATAATTAAAATAA
*
8254999 ATTATTTTATAATTAAAATAA
1 ATTATATTATAATTAAAATAA
8255020 ATTATATTAT
1 ATTATATTAT
8255030 TTCAGAGTAA
Statistics
Matches: 35, Mismatches: 13, Indels: 4
0.67 0.25 0.08
Matches are distributed among these distances:
19 13 0.37
21 22 0.63
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (21 bp):
ATTATATTATAATTAAAATAA
Found at i:8255000 original size:40 final size:40
Alignment explanation
Indices: 8254940--8255030 Score: 164
Period size: 40 Copynumber: 2.3 Consensus size: 40
8254930 CATCAACTTG
*
8254940 ATTAAAATATTACGGAAATATTATTTTATAATTAAAATAA
1 ATTATAATATTACGGAAATATTATTTTATAATTAAAATAA
8254980 ATTATAATATTACGGAAATATTATTTTATAATTAAAATAA
1 ATTATAATATTACGGAAATATTATTTTATAATTAAAATAA
*
8255020 ATTATATTATT
1 ATTATAATATT
8255031 TCAGAGTAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.44
Consensus pattern (40 bp):
ATTATAATATTACGGAAATATTATTTTATAATTAAAATAA
Found at i:8257054 original size:21 final size:21
Alignment explanation
Indices: 8257030--8257099 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
8257020 ATGAGGATTG
*
8257030 AACGGAAGCTCATAAGAGCTG
1 AACGGAAGCTCATAAGAGCTA
* * * *
8257051 AACGGAAACCCATAAGGGTTA
1 AACGGAAGCTCATAAGAGCTA
* *
8257072 AACTGAAGCTCAAAAGAGCTA
1 AACGGAAGCTCATAAGAGCTA
8257093 AACGGAA
1 AACGGAA
8257100 ACCCATTAGG
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.13
Consensus pattern (21 bp):
AACGGAAGCTCATAAGAGCTA
Found at i:8257059 original size:42 final size:42
Alignment explanation
Indices: 8256992--8257116 Score: 151
Period size: 42 Copynumber: 3.0 Consensus size: 42
8256982 AGGCTGCACA
* * * * *
8256992 GAAGCACATAAGTGCTAAACAGAAACCCATGAGGATTGAACG
1 GAAGCTCATAAGAGCTAAACGGAAACCCATAAGGATTAAACG
* * *
8257034 GAAGCTCATAAGAGCTGAACGGAAACCCATAAGGGTTAAACT
1 GAAGCTCATAAGAGCTAAACGGAAACCCATAAGGATTAAACG
* * *
8257076 GAAGCTCAAAAGAGCTAAACGGAAACCCATTAGGGTTAAAC
1 GAAGCTCATAAGAGCTAAACGGAAACCCATAAGGATTAAAC
8257117 AAAAACTCAT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.15
Consensus pattern (42 bp):
GAAGCTCATAAGAGCTAAACGGAAACCCATAAGGATTAAACG
Found at i:8257115 original size:21 final size:21
Alignment explanation
Indices: 8256998--8257116 Score: 76
Period size: 21 Copynumber: 5.7 Consensus size: 21
8256988 CACAGAAGCA
* * *
8256998 CATAAGTGCTAAACAGAAACC
1 CATAAGGGTTAAACGGAAACC
* * * * *
8257019 CATGAGGATTGAACGGAAGCT
1 CATAAGGGTTAAACGGAAACC
* * *
8257040 CATAAGAGCTGAACGGAAACC
1 CATAAGGGTTAAACGGAAACC
* * *
8257061 CATAAGGGTTAAACTGAAGCT
1 CATAAGGGTTAAACGGAAACC
* * *
8257082 CAAAAGAGCTAAACGGAAACC
1 CATAAGGGTTAAACGGAAACC
*
8257103 CATTAGGGTTAAAC
1 CATAAGGGTTAAAC
8257117 AAAAACTCAT
Statistics
Matches: 68, Mismatches: 30, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
21 68 1.00
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.16
Consensus pattern (21 bp):
CATAAGGGTTAAACGGAAACC
Found at i:8258952 original size:18 final size:18
Alignment explanation
Indices: 8258902--8258952 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 18
8258892 TTTTAGAGAT
*
8258902 TATAAAAGAAGAAAA-AA
1 TATAAAAGAAAAAAATAA
* * *
8258919 TAAAAAAGAGATAAATAA
1 TATAAAAGAAAAAAATAA
*
8258937 TGTAAAAGAAAAAAAT
1 TATAAAAGAAAAAAAT
8258953 TTAAAATATA
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.16
Consensus pattern (18 bp):
TATAAAAGAAAAAAATAA
Found at i:8259115 original size:29 final size:28
Alignment explanation
Indices: 8259046--8259116 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 28
8259036 ATTGAGTAAC
*
8259046 AAAAAAATTATTTAGGTACAACTTGTGAT
1 AAAAAAA-TGTTTAGGTACAACTTGTGAT
8259075 AAAAAAATGTTTAGGTACTAACTT-TGA-
1 AAAAAAATGTTTAGGTAC-AACTTGTGAT
8259102 AAAACAAATAGTTTA
1 AAAA-AAAT-GTTTA
8259117 AGTATCAATT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
27 4 0.11
28 17 0.45
29 17 0.45
ACGTcount: A:0.48, C:0.07, G:0.13, T:0.32
Consensus pattern (28 bp):
AAAAAAATGTTTAGGTACAACTTGTGAT
Found at i:8263197 original size:17 final size:18
Alignment explanation
Indices: 8263165--8263199 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8263155 AACATTAATC
*
8263165 TTAATTATTCTAAATATT
1 TTAATTAATCTAAATATT
8263183 TTAATTAAT-TAAATATT
1 TTAATTAATCTAAATATT
8263200 ATAGTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
TTAATTAATCTAAATATT
Found at i:8264616 original size:2 final size:2
Alignment explanation
Indices: 8264609--8264635 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8264599 ATGATTAACC
8264609 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8264636 GTATTTTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8268163 original size:15 final size:15
Alignment explanation
Indices: 8268143--8268177 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8268133 TTGTAAAGTA
* *
8268143 ACATTCCCGATAATC
1 ACATTCCCAACAATC
8268158 ACATTCCCAACAATC
1 ACATTCCCAACAATC
8268173 ACATT
1 ACATT
8268178 AAGTTAGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.37, C:0.34, G:0.03, T:0.26
Consensus pattern (15 bp):
ACATTCCCAACAATC
Found at i:8269778 original size:13 final size:13
Alignment explanation
Indices: 8269760--8269784 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8269750 GAATTGTTCA
8269760 ATTAAAGAATTTG
1 ATTAAAGAATTTG
8269773 ATTAAAGAATTT
1 ATTAAAGAATTT
8269785 TCTTGAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (13 bp):
ATTAAAGAATTTG
Found at i:8270250 original size:37 final size:39
Alignment explanation
Indices: 8270209--8270301 Score: 102
Period size: 37 Copynumber: 2.4 Consensus size: 39
8270199 TAATAATATT
* *
8270209 TTAATAGTTTAATATTAAATTAA-ATTTAA-TACTTATC
1 TTAATAGTTTAATATTAAATTAATATTAAAGTAATTATC
* *
8270246 TTAATAGTATT-TTATTAATTTAATATTAAAGTAATTATC
1 TTAATAGT-TTAATATTAAATTAATATTAAAGTAATTATC
*
8270285 TTAATAAATTTAATATT
1 TTAAT-AGTTTAATATT
8270302 TATCTTGTAG
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
37 18 0.40
38 7 0.16
39 14 0.31
40 6 0.13
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (39 bp):
TTAATAGTTTAATATTAAATTAATATTAAAGTAATTATC
Found at i:8272145 original size:5 final size:5
Alignment explanation
Indices: 8272135--8272183 Score: 62
Period size: 5 Copynumber: 9.2 Consensus size: 5
8272125 GATTATGTTT
*
8272135 TTATA TTATA TTATTA TTATTA ATATA TTATA TTATA TTATA TATATA
1 TTATA TTATA TTA-TA TTA-TA TTATA TTATA TTATA TTATA T-TATA
8272183 T
1 T
8272184 AACAAAAGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
5 25 0.62
6 15 0.38
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TTATA
Found at i:8272277 original size:22 final size:22
Alignment explanation
Indices: 8272236--8272278 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8272226 CAAACGAAAC
*
8272236 AGAGAAGGAAAGAAGGAAAGGA
1 AGAGAAGGAAAGAAGAAAAGGA
8272258 AGAGAA-GAAAGAAAGAAAAGG
1 AGAGAAGGAAAG-AAGAAAAGG
8272279 GGAAATTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (22 bp):
AGAGAAGGAAAGAAGAAAAGGA
Found at i:8282044 original size:180 final size:180
Alignment explanation
Indices: 8281736--8282167 Score: 676
Period size: 180 Copynumber: 2.4 Consensus size: 180
8281726 TAATAATAAT
* ** *
8281736 TTAATTTTAGCATAATTATTATTTATA----GATTTGTTTTATAGTAATATAGGTAAGGTGGATT
1 TTAA-TTTAGCATCATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGGTGGATT
8281797 TATAATTGTCACATTATTTTATATTAATGGTAGGAAAGTAGGGACATTGAAAATAAATCGCAATG
65 TATAATTGTCACATTATTTTATATTAATGGT---AAAGTAGGGACATTGAAAATAAATCGCAATG
* *
8281862 TGTTACTATTAATAATAATTTAATTTCAAATTACATTATTGCAATATGAGGAGAC
127 TGTTACTATTAATAATAAATTAATTTCAAATTACATTATTGCAATATGAGGA-AA
8281917 TTAATTTAGCATCATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGGTGGATTT
1 TTAATTTAGCATCATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGGTGGATTT
*
8281982 ATAATTGTCACATTATTTTATATTAATGGT-AAGTAGGGACATTGAAAATAAATCGTAATGTGTT
66 ATAATTGTCACATTATTTTATATTAATGGTAAAGTAGGGACATTGAAAATAAATCGCAATGTGTT
* * *
8282046 ATTTTTTATAATAAATTAATTTCAAATTACATTATTGCAATATGAGGAAA
131 ACTATTAATAATAAATTAATTTCAAATTACATTATTGCAATATGAGGAAA
* *
8282096 TTAATTTAGCATCATTATTATTTATATTGTGATTTGTTTTATCGTAATGTACATATGGTGGATTT
1 TTAATTTAGCATCATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGGTGGATTT
8282161 ATAATTG
66 ATAATTG
8282168 CGAAATTATT
Statistics
Matches: 235, Mismatches: 12, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
179 71 0.30
180 98 0.42
181 4 0.02
184 62 0.26
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (180 bp):
TTAATTTAGCATCATTATTATTTATATTGTGATTTGTTTTATAGTAATATACATATGGTGGATTT
ATAATTGTCACATTATTTTATATTAATGGTAAAGTAGGGACATTGAAAATAAATCGCAATGTGTT
ACTATTAATAATAAATTAATTTCAAATTACATTATTGCAATATGAGGAAA
Found at i:8291163 original size:62 final size:62
Alignment explanation
Indices: 8291066--8291188 Score: 237
Period size: 62 Copynumber: 2.0 Consensus size: 62
8291056 CTTCCTCTGC
8291066 GGTATTTATTCATCCTAATGATTCTATTGTGAATAATGTTTTTATCATTGTAAGGTAGTGGT
1 GGTATTTATTCATCCTAATGATTCTATTGTGAATAATGTTTTTATCATTGTAAGGTAGTGGT
*
8291128 GGTATTTATTCATCCTAATGATTCTATTGTGAATAATGTTTTTATCATTGTAATGTAGTGG
1 GGTATTTATTCATCCTAATGATTCTATTGTGAATAATGTTTTTATCATTGTAAGGTAGTGG
8291189 CCTTTACCAA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.26, C:0.08, G:0.19, T:0.47
Consensus pattern (62 bp):
GGTATTTATTCATCCTAATGATTCTATTGTGAATAATGTTTTTATCATTGTAAGGTAGTGGT
Found at i:8295092 original size:15 final size:15
Alignment explanation
Indices: 8295074--8295126 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
8295064 CACTGCCTCA
* * *
8295074 TCATCGTCGTCTTCG
1 TCATCGTCCTCATCC
* *
8295089 TCATCATCCTCGTCC
1 TCATCGTCCTCATCC
*
8295104 TCATCGTCCTCATCT
1 TCATCGTCCTCATCC
8295119 TCATCGTC
1 TCATCGTC
8295127 ATCCTCTTCT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.11, C:0.40, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATCGTCCTCATCC
Found at i:8297587 original size:20 final size:21
Alignment explanation
Indices: 8297559--8297598 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8297549 TATAAAATAT
*
8297559 ATAGAGAAATCGAAT-CTATC
1 ATAGAGAAAGCGAATGCTATC
*
8297579 ATAGCGAAAGCGAATGCTAT
1 ATAGAGAAAGCGAATGCTAT
8297599 ATTACAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (21 bp):
ATAGAGAAAGCGAATGCTATC
Found at i:8297820 original size:8 final size:7
Alignment explanation
Indices: 8297795--8297819 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8297785 TTTTAATGAT
8297795 TTTTCAA
1 TTTTCAA
8297802 TTTTCAA
1 TTTTCAA
8297809 TTTTCAA
1 TTTTCAA
8297816 TTTT
1 TTTT
8297820 TTGGTTTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (7 bp):
TTTTCAA
Found at i:8298163 original size:14 final size:14
Alignment explanation
Indices: 8298144--8298171 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8298134 TCAAGATAAA
8298144 GATAATATTGATCG
1 GATAATATTGATCG
8298158 GATAATATTGATCG
1 GATAATATTGATCG
8298172 AAGGTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
GATAATATTGATCG
Found at i:8312966 original size:28 final size:26
Alignment explanation
Indices: 8312934--8312993 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 26
8312924 CCTTATCTCA
8312934 TTATTTAATATATCAATC-TCAATTTCTT
1 TTATTTAATAT-TCAA-CATC-ATTTCTT
*
8312962 TTATTTTAATATTCAACATCATTTTTT
1 TTA-TTTAATATTCAACATCATTTCTT
8312989 TTATT
1 TTATT
8312994 AAAAAGTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
26 2 0.07
27 10 0.34
28 9 0.31
29 8 0.28
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.58
Consensus pattern (26 bp):
TTATTTAATATTCAACATCATTTCTT
Found at i:8314134 original size:37 final size:37
Alignment explanation
Indices: 8314073--8314218 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
8314063 TACGTATGAT
* *
8314073 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8314108 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8314145 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8314182 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8314219 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:8314235 original size:46 final size:46
Alignment explanation
Indices: 8314182--8314450 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
8314172 TAAGTGTAGC
* **
8314182 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
8314228 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8314274 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8314326 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
8314372 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8314424 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8314451 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:8314301 original size:52 final size:52
Alignment explanation
Indices: 8314225--8314444 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
8314215 TAGCTAAAGC
* *
8314225 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8314278 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8314330 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
8314376 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
8314428 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
8314445 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:8314347 original size:98 final size:98
Alignment explanation
Indices: 8314182--8314450 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
8314172 TAAGTGTAGC
* * *
8314182 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
8314247 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
8314281 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
8314346 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
8314379 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
8314444 GATCAGA
66 GATCAGA
8314451 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:8317631 original size:49 final size:50
Alignment explanation
Indices: 8317576--8317779 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
8317566 TTCGTTTTCT
*
8317576 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
8317625 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
8317674 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
8317732 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
8317780 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:8317746 original size:58 final size:59
Alignment explanation
Indices: 8317660--8317778 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
8317650 TACACGAAAT
8317660 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
8317718 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
8317777 CA
1 CA
8317779 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:8317759 original size:28 final size:28
Alignment explanation
Indices: 8317669--8317759 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
8317659 TCACATATCA
8317669 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
8317697 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
8317727 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
8317755 CTTAC
1 CTTAC
8317760 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:8319093 original size:37 final size:37
Alignment explanation
Indices: 8319032--8319177 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
8319022 TACGTATGAT
* *
8319032 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8319067 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8319104 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8319141 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8319178 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:8319194 original size:46 final size:46
Alignment explanation
Indices: 8319141--8319409 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
8319131 TAAGTGTAGC
* **
8319141 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
8319187 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8319233 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8319285 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
8319331 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8319383 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8319410 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:8319260 original size:52 final size:52
Alignment explanation
Indices: 8319184--8319403 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
8319174 TAGCTAAAGC
* *
8319184 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8319237 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8319289 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
8319335 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
8319387 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
8319404 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:8319306 original size:98 final size:98
Alignment explanation
Indices: 8319141--8319409 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
8319131 TAAGTGTAGC
* * *
8319141 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
8319206 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
8319240 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
8319305 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
8319338 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
8319403 GATCAGA
66 GATCAGA
8319410 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:8327478 original size:66 final size:65
Alignment explanation
Indices: 8327402--8327777 Score: 220
Period size: 66 Copynumber: 5.7 Consensus size: 65
8327392 AGCTGTCACG
* * *
8327402 TCCTTCGCTTCCTTCGCTTTTTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTTCCATTGTAGT
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGC-TTTTCCATTGTAGT
8327467 A
65 A
* * * ** * * ** *
8327468 TCTTTTGCTTCCTTAGCTTTCTGC-GCTGCGTAGTCTGTCA-ACTCGGAAGCCTTCTGCGCTGTC
1 TCCTTTGCTTCCTTAGCTTTCT-CAGCTGCATAGTCT-TTATACTCGGTCG-CTTTTCCATTGTA
8327531 GTA
63 GTA
* * * * * * *
8327534 TCCTTTGCTCCCTTGGCTTTCTCAGCTGCATAGTCCTTATATTCAGTCGCTTTTCCAATTGCAGC
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTCC-ATTGTAGT
8327599 A
65 A
* ** * * * ** **
8327600 TCCTTTGCATCCTTAGCTTTCTGTGCTGCATAATCTGTATACTCAGAAGCCTTTTGGGA-TGTAG
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCG-CTTTT-CCATTGTAG
8327664 TA
64 TA
* * ** * * * * * *
8327666 T-CTCTTGCCTCCTTGGCTTTCTGGGCTGTATAATCCTTATATTCAGTCGCTTTCCCCATTGTAG
1 TCCT-TTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTT-TCCATTGTAG
*
8327730 CA
64 TA
* * ** * *
8327732 TCCTTTGCATCCTTAGTTTTCTGTGCTGCATAGCCTGTATACTCGG
1 TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGG
8327778 AAGCCTTCTG
Statistics
Matches: 229, Mismatches: 69, Indels: 24
0.71 0.21 0.07
Matches are distributed among these distances:
65 15 0.07
66 202 0.88
67 12 0.05
ACGTcount: A:0.14, C:0.27, G:0.18, T:0.41
Consensus pattern (65 bp):
TCCTTTGCTTCCTTAGCTTTCTCAGCTGCATAGTCTTTATACTCGGTCGCTTTTCCATTGTAGTA
Found at i:8327738 original size:198 final size:198
Alignment explanation
Indices: 8327533--8328045 Score: 642
Period size: 198 Copynumber: 2.6 Consensus size: 198
8327523 GCGCTGTCGT
* * ** *
8327533 ATCCTTTGCTCCCTTGGCTTTCTCAGCTGCATAGTCCT-TATATTCAGTCG-CTT-T-TCCAATT
1 ATCCTTTGCTCCCTTAGCTTTCTCAGCTGCATAG-CCTGTATACTCAGAAGCCTTCTGTCC-AGT
* *
8327594 GCAGCATCCTTTGCATCCTTAGCTTTCTGTGCTGCATAATCTGTATACTCAGAAGCCTTTTGGGA
64 G--GCATCCTTTGCATCCTTAGCTTTCTGGGCAGCATAATCTGTATACTCAGAAGCCTTTTGGGA
*
8327659 TGTAGTATCTCTTGCCTCCTTGGCTTTCTGGGCTGTATAATCCTTATATTCAGTCGCTTTCCCCA
127 TGTAGTATCTCTTGCCTCCTTGGCTTTCTCGGCTGTATAATCCTTATATTCAGTCGCTTTCCCCA
8327724 TTGTAGC
192 TTGTAGC
* ** * *
8327731 ATCCTTTGCAT-CCTTAGTTTTCTGTGCTGCATAGCCTGTATACTCGGAAGCCTTCTGTGCAGTG
1 ATCCTTTGC-TCCCTTAGCTTTCTCAGCTGCATAGCCTGTATACTCAGAAGCCTTCTGTCCAGTG
** * * *
8327795 GTGTCTTTTGCGTCCTTAGCTTTCTGGGCAGCATAATCTGTATACTCAGAAGCCTTTTGGGCTGT
65 GCATCCTTTGCATCCTTAGCTTTCTGGGCAGCATAATCTGTATACTCAGAAGCCTTTTGGGATGT
* *
8327860 GGTATCTCTTGCCTCCTTGGCTTTCTCGGCTGTATAATCCTTATATTCAGTCGCTTTCCCCGTTG
130 AGTATCTCTTGCCTCCTTGGCTTTCTCGGCTGTATAATCCTTATATTCAGTCGCTTTCCCCATTG
8327925 TAGC
195 TAGC
* ** * * * * * *
8327929 ATCCTTTGCACCCTTAG-TTTGCTGTGCTGCATAGTCTGTATACTCGGAAGCCTTTTTTGCTGTG
1 ATCCTTTGCTCCCTTAGCTTT-CTCAGCTGCATAGCCTGTATACTCAGAAGCCTTCTGTCCAGTG
** *
8327993 GTGTCCTTTGCGTCCTTAGCTTTCTGGGCAGCATAATCTGTATACTCAGAAGC
65 GCATCCTTTGCATCCTTAGCTTTCTGGGCAGCATAATCTGTATACTCAGAAGC
8328046 TTTACCTGTT
Statistics
Matches: 282, Mismatches: 26, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
197 6 0.02
198 266 0.94
199 4 0.01
200 4 0.01
201 2 0.01
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.39
Consensus pattern (198 bp):
ATCCTTTGCTCCCTTAGCTTTCTCAGCTGCATAGCCTGTATACTCAGAAGCCTTCTGTCCAGTGG
CATCCTTTGCATCCTTAGCTTTCTGGGCAGCATAATCTGTATACTCAGAAGCCTTTTGGGATGTA
GTATCTCTTGCCTCCTTGGCTTTCTCGGCTGTATAATCCTTATATTCAGTCGCTTTCCCCATTGT
AGC
Found at i:8327811 original size:132 final size:130
Alignment explanation
Indices: 8327426--8327832 Score: 465
Period size: 132 Copynumber: 3.1 Consensus size: 130
8327416 CGCTTTTTCA
* * * * * * * *
8327426 GCTGCATAGTCTTTATACTCGGTCGCTTTTTCCATTGTAGTATCTTTTGCTTCCTTAGCTTTCTG
1 GCTGCATAATCCTTATATTCAGTCGCTTTTCCCATTGTAGCATCCTTTGCATCCTTAGCTTTCTG
* * * * *
8327491 CGCTGCGTAGTCTGTCA-ACTCGGAAGCCTTCTGCGCTGTCGTATCCTTTGCTCCCTTGGCTTTC
66 TGCTGCATAGTCTGT-ATACTCGGAAGCCTTCTG-GCAGTAGTATCTTTTGCT-CCTTGGCTTTC
**
8327555 TCA
128 TGG
* * *
8327558 GCTGCATAGTCCTTATATTCAGTCGCTTTTCCAATTGCAGCATCCTTTGCATCCTTAGCTTTCTG
1 GCTGCATAATCCTTATATTCAGTCGCTTTTCCCATTGTAGCATCCTTTGCATCCTTAGCTTTCTG
* * * * *
8327623 TGCTGCATAATCTGTATACTCAGAAGCCTTTTGGGATGTAGTATCTCTTGCCTCCTTGGCTTTCT
66 TGCTGCATAGTCTGTATACTCGGAAGCCTTCTGGCA-GTAGTATCTTTTG-CTCCTTGGCTTTCT
8327688 GG
129 GG
* * *
8327690 GCTGTATAATCCTTATATTCAGTCGCTTTCCCCATTGTAGCATCCTTTGCATCCTTAGTTTTCTG
1 GCTGCATAATCCTTATATTCAGTCGCTTTTCCCATTGTAGCATCCTTTGCATCCTTAGCTTTCTG
* * * *
8327755 TGCTGCATAGCCTGTATACTCGGAAGCCTTCTGTGCAGTGGTGTCTTTTGCGTCCTTAGCTTTCT
66 TGCTGCATAGTCTGTATACTCGGAAGCCTTCTG-GCAGTAGTATCTTTTGC-TCCTTGGCTTTCT
8327820 GG
129 GG
*
8327822 GCAGCATAATC
1 GCTGCATAATC
8327833 TGTATACTCA
Statistics
Matches: 232, Mismatches: 38, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
131 3 0.01
132 225 0.97
133 4 0.02
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.40
Consensus pattern (130 bp):
GCTGCATAATCCTTATATTCAGTCGCTTTTCCCATTGTAGCATCCTTTGCATCCTTAGCTTTCTG
TGCTGCATAGTCTGTATACTCGGAAGCCTTCTGGCAGTAGTATCTTTTGCTCCTTGGCTTTCTGG
Found at i:8327819 original size:66 final size:66
Alignment explanation
Indices: 8327465--8328045 Score: 331
Period size: 66 Copynumber: 8.8 Consensus size: 66
8327455 TTCCATTGTA
* * * * * * *
8327465 GTATCTTTTGCTTCCTTAGCTTTCTGCGCTGCGTAGTCTGTCA-ACTCGGAAGCCTTCTGCGCTG
1 GTATCCTTTGCATCCTTAGCTTTCTGGGCTGCATAATCTGT-ATACTCAGAAGCCTTCTGTGCTG
*
8327529 TC
65 TG
* ** * * ** *
8327531 GTATCCTTTGC-TCCCTTGGCTTTCTCAGCTGCATAGTCCT-TATATTCAGTCG-CTT-T-TCCA
1 GTATCCTTTGCAT-CCTTAGCTTTCTGGGCTGCATAAT-CTGTATACTCAGAAGCCTTCTGTGC-
8327591 AT-TG
63 -TGTG
* * * * *
8327595 CAGCATCCTTTGCATCCTTAGCTTTCTGTGCTGCATAATCTGTATACTCAGAAGCCTTTTGGGAT
1 --GTATCCTTTGCATCCTTAGCTTTCTGGGCTGCATAATCTGTATACTCAGAAGCCTTCTGTGCT
*
8327660 GTA
64 GTG
* * * * ** * *****
8327663 GTAT-CTCTTGCCTCCTTGGCTTTCTGGGCTGTATAATCCT-TATATTCAGTCGCTTTCCCCATT
1 GTATCCT-TTGCATCCTTAGCTTTCTGGGCTGCATAAT-CTGTATACTCAGAAGCCTTCTGTGCT
*
8327726 GTA
64 GTG
* * * ** * *
8327729 GCATCCTTTGCATCCTTAGTTTTCTGTGCTGCATAGCCTGTATACTCGGAAGCCTTCTGTGCAGT
1 GTATCCTTTGCATCCTTAGCTTTCTGGGCTGCATAATCTGTATACTCAGAAGCCTTCTGTGCTGT
8327794 G
66 G
* * * * * *
8327795 GTGTCTTTTGCGTCCTTAGCTTTCTGGGCAGCATAATCTGTATACTCAGAAGCCTTTTGGGCTGT
1 GTATCCTTTGCATCCTTAGCTTTCTGGGCTGCATAATCTGTATACTCAGAAGCCTTCTGTGCTGT
8327860 G
66 G
* * * * * ** * *** *
8327861 GTAT-CTCTTGCCTCCTTGGCTTTCTCGGCTGTATAATCCT-TATATTCAGTCGCTTTCCCCGTT
1 GTATCCT-TTGCATCCTTAGCTTTCTGGGCTGCATAAT-CTGTATACTCAGAAGCCTTCTGTGCT
*
8327924 GTA
64 GTG
* * * * * * *
8327927 GCATCCTTTGCACCCTTAG-TTTGCTGTGCTGCATAGTCTGTATACTCGGAAGCCTTTTTTGCTG
1 GTATCCTTTGCATCCTTAGCTTT-CTGGGCTGCATAATCTGTATACTCAGAAGCCTTCTGTGCTG
8327991 TG
65 TG
* * *
8327993 GTGTCCTTTGCGTCCTTAGCTTTCTGGGCAGCATAATCTGTATACTCAGAAGC
1 GTATCCTTTGCATCCTTAGCTTTCTGGGCTGCATAATCTGTATACTCAGAAGC
8328046 TTTACCTGTT
Statistics
Matches: 376, Mismatches: 116, Indels: 46
0.70 0.22 0.09
Matches are distributed among these distances:
63 1 0.00
64 2 0.01
65 18 0.05
66 335 0.89
67 18 0.05
68 2 0.01
ACGTcount: A:0.15, C:0.26, G:0.20, T:0.39
Consensus pattern (66 bp):
GTATCCTTTGCATCCTTAGCTTTCTGGGCTGCATAATCTGTATACTCAGAAGCCTTCTGTGCTGT
G
Found at i:8330040 original size:23 final size:23
Alignment explanation
Indices: 8330010--8330055 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
8330000 TTGGAACCCA
*
8330010 ATACGTTAGGGCTCCATTCTCTC
1 ATACGTTAGGGCTCAATTCTCTC
8330033 ATACGTTAGGGCTCAATTCTCTC
1 ATACGTTAGGGCTCAATTCTCTC
8330056 GAGGATTCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (23 bp):
ATACGTTAGGGCTCAATTCTCTC
Found at i:8330721 original size:17 final size:16
Alignment explanation
Indices: 8330699--8330734 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8330689 CATAATACAA
8330699 ATTATATATAAAATAGT
1 ATTATATA-AAAATAGT
*
8330716 ATTATATAAAAATATT
1 ATTATATAAAAATAGT
8330732 ATT
1 ATT
8330735 GACTTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
ATTATATAAAAATAGT
Found at i:8331470 original size:109 final size:109
Alignment explanation
Indices: 8331304--8331582 Score: 366
Period size: 109 Copynumber: 2.6 Consensus size: 109
8331294 GTTAAACGAG
* * * * *
8331304 AAATCGAAACCCAGCACATTAGGGCACG--TTCATCGAATTTTCAAACGCAAAACATTGCCTTA-
1 AAATCGACACCCAACACCTTAGGGCATGTTTTC-TCGAATTTCCAAACGCAAAACATTGCCTTAT
* * * * *
8331366 TTTGAGAATTTTTAAAAGGATATTTAGCCATTTGATTGAATGAGAA
65 TTTAAAAATTTTTAAAA-GATATTAAACCATTTGATTGAACGAGAA
* *
8331412 AAATCGACACCCAACACCTTAGGGTATGTTTTCTTGAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
*
8331477 TTAAAAATTTTTAAAAGATATTAAACCATTTGGTTGAACGAGAA
66 TTAAAAATTTTTAAAAGATATTAAACCATTTGATTGAACGAGAA
* * *
8331521 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCCAAACGCTAAATATTGCCT
1 AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTT-CCAAACGCAAAACATTGCCT
8331583 CAATTAGAAA
Statistics
Matches: 149, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
108 23 0.15
109 90 0.60
110 36 0.24
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (109 bp):
AAATCGACACCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTAAAAATTTTTAAAAGATATTAAACCATTTGATTGAACGAGAA
Found at i:8331909 original size:17 final size:18
Alignment explanation
Indices: 8331889--8331922 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8331879 TATATGTTTT
8331889 AAGGATAT-TAAATATAA
1 AAGGATATGTAAATATAA
*
8331906 AAGGTTATGTAAATATA
1 AAGGATATGTAAATATA
8331923 TATACATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (18 bp):
AAGGATATGTAAATATAA
Found at i:8332164 original size:3 final size:3
Alignment explanation
Indices: 8332156--8332180 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8332146 AATAGAACTG
8332156 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
8332181 CATGAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:8334405 original size:87 final size:87
Alignment explanation
Indices: 8334209--8335116 Score: 1058
Period size: 87 Copynumber: 10.5 Consensus size: 87
8334199 CTACCGTAAT
* * ** * **
8334209 CGATAGAGGCAAGACTTTGTTTTTTATCTGCTTCACTGTTAACGCAGGAATACAAGATCTGCT-T
1 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTAT
* * *
8334273 ATTTGACCAGCTCCACTGCAAC
66 CTTTAACCAGCTCCACTACAAC
* *
8334295 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAAGAAGGCAAGATCTGCTAT
1 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTAT
* *
8334360 CTTTAACCAGCTCCATTGCAAC
66 CTTTAACCAGCTCCACTACAAC
* * * *
8334382 TGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCGCTGTTAACGCAGGAAGACAAGATTTGCTAT
1 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTAT
*
8334447 CTTCAACCAGCTCCACTACAAC
66 CTTTAACCAGCTCCACTACAAC
* * * * * * * * *
8334469 TGATGGAGGCAAGGCTTGCGTCTTCGATCTGCTTCGCTGTCAAGGTAGGAAGGCAAAATCTGTTG
1 CGATGGAGGCAAGGCTT-TGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTA
*
8334534 TCTTCAACCAGCTCCACTACAAC
65 TCTTTAACCAGCTCCACTACAAC
* * * *
8334557 CGA-GAGAGGCAAGG-TTTGTGTATTCGATCTGCTTCGCGGTCAAGGCAGGAAGGCAAGATCTGT
1 CGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGC
* * *
8334620 TGTCTTCAACCAACTCCACTACAAC
63 TATCTTTAACCAGCTCCACTACAAC
* * * * *
8334645 CGA-GAAAGGCAAGG-TTTGTATCTTCGATCTGC-TCGCTGTCAAGGCAGAAAGGCAAGATCTGG
1 CGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGC
* *
8334707 TGTCTTCAACCAGCTCCACTACAAC
63 TATCTTTAACCAGCTCCACTACAAC
* * * *
8334732 CGA-GAGATGCAAGG-TTTGTTTTCGGTCTGCTTCGCTGTTAACGCAGAAAGGCAAGATCTGTTA
1 CGATG-GAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTA
*
8334795 TCTTTAACTAGCTCCACTACAAC
65 TCTTTAACCAGCTCCACTACAAC
* *
8334818 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAAGAAGGCAATATCTGCTAT
1 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTAT
*
8334883 CTTTAACCAGCTCTACTACAAC
66 CTTTAACCAGCTCCACTACAAC
* * * * *
8334905 CGATAGAGGCAATGTTTTGTTTTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGCTAT
1 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTAT
8334970 CTTT----A-----ACTACAAC
66 CTTTAACCAGCTCCACTACAAC
* * * *
8334983 CGATGGATGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGAAGACAAGATCTGCTAT
1 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTAT
8335048 CTTTAACCAGCTCCACTACAAC
66 CTTTAACCAGCTCCACTACAAC
* * *
8335070 CGATGGAGGCAAGGCTTTGTTTTTGATCTGTTTCGCTGTTAATGCAG
1 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
8335117 AAATGCCTCC
Statistics
Matches: 724, Mismatches: 81, Indels: 33
0.86 0.10 0.04
Matches are distributed among these distances:
78 70 0.10
82 1 0.00
83 1 0.00
85 9 0.01
86 117 0.16
87 365 0.50
88 161 0.22
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (87 bp):
CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTAT
CTTTAACCAGCTCCACTACAAC
Found at i:8334424 original size:173 final size:174
Alignment explanation
Indices: 8334209--8335116 Score: 1048
Period size: 173 Copynumber: 5.3 Consensus size: 174
8334199 CTACCGTAAT
* * ** * **
8334209 CGATAGAGGCAAGACTTTGTTTTTTATCTGCTTCACTGTTAACGCAGGAATACAAGATCTGCTTA
1 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTTA
* * *
8334274 T-TTGACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAT
66 TCTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAG
* *
8334338 GCAAGAAGGCAAGATCTGCTATCTTTAACCAGCTCCATTGCAAC
131 GCAAGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAAC
* * * *
8334382 TGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCGCTGTTAACGCAGGAAGACAAGATTTGC-TA
1 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTTA
* * * *
8334446 TCTTCAACCAGCTCCACTACAACTGATGGAGGCAAGGCTTGCGTCTTCGATCTGCTTCGCTGTCA
66 TCTT-AACCAGCTCCACTACAACCGATGGAGGCAAGGCTT-TGTTTTCGATCTGCTTCGCTGTTA
* * * * * *
8334511 AGGTAGGAAGGCAAAATCTGTTGTCTTCAACCAGCTCCACTACAAC
129 AGGCAAGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAAC
* * *
8334557 CGA-GAGAGGCAAGG-TTTGTGTATTCGATCTGCTTCGCGGTCAAGGCAGGAAGGCAAGATCTG-
1 CGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGC
* * *
8334619 TTGTCTTCAACCAACTCCACTACAACCGA-GAAAGGCAAGG-TTTGTATCTTCGATCTGC-TCGC
63 TTATCTT-AACCAGCTCCACTACAACCGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGC
* * * *
8334681 TGTCAAGGC-AGAAAGGCAAGATCTGGTGTCTTCAACCAGCTCCACTACAAC
124 TGTTAAGGCAAG-AAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAAC
* * *
8334732 CGA-GAGATGCAAGG-TTTGTTTTCGGTCTGCTTCGCTGTTAACGCAGAAAGGCAAGATCTG-TT
1 CGATG-GAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTT
*
8334794 ATCTTTAACTAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTA
65 ATC-TTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTA
* * *
8334859 ACGCAAGAAGGCAATATCTGCTATCTTTAACCAGCTCTACTACAAC
129 AGGCAAGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAAC
* * * * *
8334905 CGATAGAGGCAATGTTTTGTTTTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGATCTGC-TA
1 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTTA
* * * *
8334969 TCTT-------T-AACTACAACCGATGGATGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAAT
66 TCTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAG
* *
8335026 GCAGGAAGACAAGATCTGCTATCTTTAACCAGCTCCACTACAAC
131 GCAAGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAAC
* * *
8335070 CGATGGAGGCAAGGCTTTGTTTTTGATCTGTTTCGCTGTTAATGCAG
1 CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
8335117 AAATGCCTCC
Statistics
Matches: 637, Mismatches: 79, Indels: 46
0.84 0.10 0.06
Matches are distributed among these distances:
165 129 0.20
166 1 0.00
172 13 0.02
173 179 0.28
174 97 0.15
175 140 0.22
176 78 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (174 bp):
CGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTTA
TCTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAG
GCAAGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAAC
Found at i:8335026 original size:78 final size:80
Alignment explanation
Indices: 8334897--8336945 Score: 980
Period size: 87 Copynumber: 23.9 Consensus size: 80
8334887 AACCAGCTCT
* * * * *
8334897 ACTACAACCGATAGAGGCAATGTTTTGTTTTCGATCTGCTTCACTGTTAATGCAGGAAGGCAAGA
1 ACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGA
8334962 TCTGCTATCTTT-A-
66 TCTGCTATCTTTAAC
* *
8334975 ACTACAACCGATGGATGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGAAGACAAGA
1 ACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGA
8335040 TCTGCTATCTTTAACCAGCTCC
66 TCTGCTATCTTT-A--A----C
* * *
8335062 ACTACAACCGATGGAGGCAAGGCTTTGTTTTTGATCTGTTTCGCTGTTAATGCA-G-A-A-ATG-
1 ACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGA
* * **
8335122 CCT-CCA-C-TGCA-
66 TCTGCTATCTTTAAC
* ** * *** * ** * *
8335133 AC--CGATGGA-GGCAATGCTTTGTTTTCGATCTGCTTCG--CTG-TT-AATG-CAA-GAAGGCA
1 ACTACAACCGATGG--AGGCAAGGCTTT-G-T-T--TTCGATCTGCTTCGCTGTTAATGCAGG-A
*
8335189 AG--AT---CTGCTATCTTTAACC
58 AGACAAGATCTGCTATCTTTAA-C
*
8335208 AGCTCCATTGCAACCGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCGCTGTTAATGCAGGAAG
1 A-CT--A---CAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAG
* * *
8335273 GCAAGATTTGCTATCTTCAACCAGCTCC
60 ACAAGATCTGCTATCTT-TA--A----C
* * * * * * *
8335301 ACTACAACTGATGGAGGCAAGGCTTGCGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAA
1 ACTACAACCGATGGAGGCAAGGCTT-TGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAG
* * *
8335366 ATCTGTTGTCTTCAACCAGCTCC
65 ATCTGCTATCTT-TA--A----C
* * * * * *
8335389 ACTACAACCGA-GAGATGCAAGG-TTTGTGTCTTCGATCTACTTCGCGGTCAAGGCAGGAAGGCA
1 ACTACAACCGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGCAGGAAGACA
* * *
8335452 AGATCTGTTGTCTTCAACCAGCTCC
63 AGATCTGCTATCTT-TA--A----C
* * * * * *
8335477 ACTACAACCGA-GAGATGCAAGG-TTTGTGTCTTCGATCTACTTCGCGGTCAAGGCAGGAAGGCA
1 ACTACAACCGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGCAGGAAGACA
* * *
8335540 AGATCTGTTGTCTTCAACCAACTCC
63 AGATCTGCTATCTT----TAA---C
* * * * *
8335565 ACTACAACCGA-GAAAGGCAAGG-TTTGTATCTTCGATCTGCTTCGCTGTCAAGGTAGGAAGGCA
1 ACTACAACCGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGCAGGAAGACA
* ** *
8335628 AGATCTGGTGCCTTCAACCAGCTCC
63 AGATCTGCTATCTT-TA--A----C
* * *
8335653 ACTACAACCGA-GAGAGGCAAGG-TTTGTTTTCGGTCTGCTTCGCTGTTAACGCAGGAAGGCAAG
1 ACTACAACCGATG-GAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAG
*
8335716 ATCTGTTATCTTTAACCAGCTCC
65 ATCTGCTATCTTT-A--A----C
* *
8335739 ACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGA
1 ACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGA
8335804 TCTGCTATCTTTAACCAGCTCC
66 TCTGCTATCTTT-A--A----C
* **
8335826 ACTACAACCGATGGAGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGTAAGA
1 ACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGA
8335891 TCTGCTATCTTTAACC
66 TCTGCTATCTTTAA-C
* * * *
8335907 AGCTCTACTGCAACCGATGGAGGCAAGACTTTGTTTTTGATCTGTTTCGCTGTTAATGCAGAAAT
1 A---CTA---CAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAA-
* *
8335972 G-CAGGATCTG-TTTCTTTGACCAGTTCC
59 GACAAGATCTGCTATCTTT-A--A----C
** * * * * *
8335999 ACTGTAACCGATGGAGGCAAGGCTTTGTTTTCGATCTACTTCGCTGTTAATGTAAGAAGGCAATA
1 ACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGA
8336064 TCTGCTATCTTTAACC
66 TCTGCTATCTTTAA-C
* * *
8336080 AGCTCCATTGCAACTGATGGAGGCAAGACTTTATTTTCGATCTGCTTCGCTGTTAATGCAGGAAG
1 A-CT--A---CAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAG
* * *
8336145 GCAAGATTTGCTATCTTCAACCAACTCC
60 ACAAGATCTGCTATCTT----TAA---C
* * * * * * *
8336173 ACTACAACTGATGGAGGCAAGGCTTGCGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAA
1 ACTACAACCGATGGAGGCAAGGCTT-TGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAG
* * *
8336238 ATCTGTTGTCTTCAACCAGCTCC
65 ATCTGCTATCTT-TA--A----C
* * *
8336261 ACTACAACCGA-GAGAGGCAAGG-TTTGTATCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCA
1 ACTACAACCGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGCAGGAAGACA
* * * *
8336324 AAATCTGTTGTCTTCAACCAGCTCC
63 AGATCTGCTATCTT-TA--A----C
* * *
8336349 ACTACAACCGA-GAGAGGCAAGG-TTTGTATCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCA
1 ACTACAACCGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGCAGGAAGACA
* *
8336412 AGATCTAG-TGTCTTCAACCAGTTCC
63 AGATCT-GCTATCTT-TA--A----C
* *
8336437 ACTACAACCGA-GAGAGGCAAGG-TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAG
1 ACTACAACCGATG-GAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAG
*
8336500 ATCTGTTATCTTTAACCAGCTCC
65 ATCTGCTATCTTT-A--A----C
*
8336523 ACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGA
1 ACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGA
8336588 TCTGCTATCTTTAACCAGCTCC
66 TCTGCTATCTTT-A--A----C
* * *
8336610 ACTACAACCGATGGAGGTAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGAAGGCAAGA
1 ACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGA
8336675 TCTGCTATCTTTAACC
66 TCTGCTATCTTTAA-C
* *
8336691 AGCTCCACTGCAATCGATGGAGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAG
1 A-CT--A---CAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAG
*
8336756 GCAAGATCTGCTATCTTTAACC
60 ACAAGATCTGCTATCTTTAA-C
* *
8336778 AGCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATACAGGAAG
1 A-CT--A---CAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAG
* *
8336843 GCAATATCTGCT-TCTTTAACC
60 ACAAGATCTGCTATCTTTAA-C
* * * *
8336864 AGCTCCACTGCAACCGATGGAGGCAAGACTTTGCTTTCGATCTGCTTCACTGTTAACGCAGGAAG
1 A-CT--A---CAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAG
*
8336929 GCAAGATCTGCTATCTT
60 ACAAGATCTGCTATCTT
8336946 CACTAATCTG
Statistics
Matches: 1700, Mismatches: 161, Indels: 211
0.82 0.08 0.10
Matches are distributed among these distances:
68 2 0.00
69 6 0.00
70 12 0.01
71 7 0.00
72 7 0.00
73 6 0.00
75 4 0.00
76 2 0.00
77 4 0.00
78 70 0.04
79 5 0.00
80 4 0.00
81 13 0.01
82 19 0.01
83 10 0.01
84 11 0.01
85 7 0.00
86 285 0.17
87 659 0.39
88 542 0.32
89 5 0.00
90 3 0.00
91 4 0.00
92 7 0.00
93 6 0.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (80 bp):
ACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGA
TCTGCTATCTTTAAC
Found at i:8335140 original size:65 final size:65
Alignment explanation
Indices: 8335058--8335180 Score: 210
Period size: 65 Copynumber: 1.9 Consensus size: 65
8335048 CTTTAACCAG
* *
8335058 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTTGATCTGTTTCGCTGTTAATGCAGAAATGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGAAATGC
* *
8335123 CTCCACTGCAACCGATGGAGGCAATGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCA
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCA
8335181 AGAAGGCAAG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 54 1.00
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.33
Consensus pattern (65 bp):
CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGAAATGC
Found at i:8335257 original size:152 final size:152
Alignment explanation
Indices: 8334979--8335268 Score: 490
Period size: 152 Copynumber: 1.9 Consensus size: 152
8334969 TCTTTAACTA
* * *
8334979 CAACCGATGGATGCAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGAAGACAAGATCTG
1 CAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAAGAAGACAAGATCTG
* * *
8335044 CTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTTGATCTGTTTCGCTGT
66 CTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCGCTGT
8335109 TAATGCAGAAATGCCTCCACTG
131 TAATGCAGAAATGCCTCCACTG
* *
8335131 CAACCGATGGAGGCAATGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAAGAAGGCAAGATCTG
1 CAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAAGAAGACAAGATCTG
* *
8335196 CTATCTTTAACCAGCTCCATTGCAACCGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCGCTGT
66 CTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCGCTGT
8335261 TAATGCAG
131 TAATGCAG
8335269 GAAGGCAAGA
Statistics
Matches: 128, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
152 128 1.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31
Consensus pattern (152 bp):
CAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAAGAAGACAAGATCTG
CTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCGCTGT
TAATGCAGAAATGCCTCCACTG
Found at i:8335378 original size:88 final size:87
Alignment explanation
Indices: 8335123--8336945 Score: 2366
Period size: 87 Copynumber: 20.9 Consensus size: 87
8335113 GCAGAAATGC
* * *
8335123 CTCCACTGCAACCGATGGAGGCAATGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAAGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
8335188 AAGATCTGCTATCTTTAACCAG
66 AAGATCTGCTATCTTTAACCAG
* * *
8335210 CTCCATTGCAACCGATGGAGGCAAGGCTTTATTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
* *
8335275 AAGATTTGCTATCTTCAACCAG
66 AAGATCTGCTATCTTTAACCAG
* * * * *
8335297 CTCCACTACAACTGATGGAGGCAAGGCTTGCGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGG
1 CTCCACTACAACCGATGGAGGCAAGGCTT-TGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
* * * *
8335362 CAAAATCTGTTGTCTTCAACCAG
65 CAAGATCTGCTATCTTTAACCAG
* * * * *
8335385 CTCCACTACAACCGA-GAGATGCAAGG-TTTGTGTCTTCGATCTACTTCGCGGTCAAGGCAGGAA
1 CTCCACTACAACCGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGCAGGAA
* * *
8335448 GGCAAGATCTGTTGTCTTCAACCAG
63 GGCAAGATCTGCTATCTTTAACCAG
* * * * *
8335473 CTCCACTACAACCGA-GAGATGCAAGG-TTTGTGTCTTCGATCTACTTCGCGGTCAAGGCAGGAA
1 CTCCACTACAACCGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGCAGGAA
* * * *
8335536 GGCAAGATCTGTTGTCTTCAACCAA
63 GGCAAGATCTGCTATCTTTAACCAG
* * * *
8335561 CTCCACTACAACCGA-GAAAGGCAAGG-TTTGTATCTTCGATCTGCTTCGCTGTCAAGGTAGGAA
1 CTCCACTACAACCGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGCAGGAA
* ** *
8335624 GGCAAGATCTGGTGCCTTCAACCAG
63 GGCAAGATCTGCTATCTTTAACCAG
* *
8335649 CTCCACTACAACCGA-GAGAGGCAAGG-TTTGTTTTCGGTCTGCTTCGCTGTTAACGCAGGAAGG
1 CTCCACTACAACCGATG-GAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
*
8335712 CAAGATCTGTTATCTTTAACCAG
65 CAAGATCTGCTATCTTTAACCAG
*
8335735 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
8335800 AAGATCTGCTATCTTTAACCAG
66 AAGATCTGCTATCTTTAACCAG
* *
8335822 CTCCACTACAACCGATGGAGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGT
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
8335887 AAGATCTGCTATCTTTAACCAG
66 AAGATCTGCTATCTTTAACCAG
* * * * * * *
8335909 CTCTACTGCAACCGATGGAGGCAAGACTTTGTTTTTGATCTGTTTCGCTGTTAATGCAGAAATGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
* * *
8335974 AGGATCTG-TTTCTTTGACCAG
66 AAGATCTGCTATCTTTAACCAG
* ** * * *
8335995 TTCCACTGTAACCGATGGAGGCAAGGCTTTGTTTTCGATCTACTTCGCTGTTAATGTAAGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
*
8336060 AATATCTGCTATCTTTAACCAG
66 AAGATCTGCTATCTTTAACCAG
* * * * *
8336082 CTCCATTGCAACTGATGGAGGCAAGACTTTATTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
* * *
8336147 AAGATTTGCTATCTTCAACCAA
66 AAGATCTGCTATCTTTAACCAG
* * * * *
8336169 CTCCACTACAACTGATGGAGGCAAGGCTTGCGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGG
1 CTCCACTACAACCGATGGAGGCAAGGCTT-TGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
* * * *
8336234 CAAAATCTGTTGTCTTCAACCAG
65 CAAGATCTGCTATCTTTAACCAG
* *
8336257 CTCCACTACAACCGA-GAGAGGCAAGG-TTTGTATCTTCGATCTGCTTCGCTGTCAAGGCAGGAA
1 CTCCACTACAACCGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGCAGGAA
* * * *
8336320 GGCAAAATCTGTTGTCTTCAACCAG
63 GGCAAGATCTGCTATCTTTAACCAG
* *
8336345 CTCCACTACAACCGA-GAGAGGCAAGG-TTTGTATCTTCGATCTGCTTCGCTGTCAAGGCAGGAA
1 CTCCACTACAACCGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGCAGGAA
* *
8336408 GGCAAGATCTAG-TGTCTTCAACCAG
63 GGCAAGATCT-GCTATCTTTAACCAG
* *
8336433 TTCCACTACAACCGA-GAGAGGCAAGG-TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGG
1 CTCCACTACAACCGATG-GAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGG
*
8336496 CAAGATCTGTTATCTTTAACCAG
65 CAAGATCTGCTATCTTTAACCAG
8336519 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
8336584 AAGATCTGCTATCTTTAACCAG
66 AAGATCTGCTATCTTTAACCAG
* *
8336606 CTCCACTACAACCGATGGAGGTAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
8336671 AAGATCTGCTATCTTTAACCAG
66 AAGATCTGCTATCTTTAACCAG
* * *
8336693 CTCCACTGCAATCGATGGAGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
8336758 AAGATCTGCTATCTTTAACCAG
66 AAGATCTGCTATCTTTAACCAG
* * *
8336780 CTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGCTTCGCTGTTAATACAGGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
*
8336845 AATATCTGCT-TCTTTAACCAG
66 AAGATCTGCTATCTTTAACCAG
* * * * *
8336866 CTCCACTGCAACCGATGGAGGCAAGACTTTGCTTTCGATCTGCTTCACTGTTAACGCAGGAAGGC
1 CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
8336931 AAGATCTGCTATCTT
66 AAGATCTGCTATCTT
8336946 CACTAATCTG
Statistics
Matches: 1587, Mismatches: 133, Indels: 32
0.91 0.08 0.02
Matches are distributed among these distances:
85 1 0.00
86 295 0.19
87 732 0.46
88 558 0.35
89 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (87 bp):
CTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
AAGATCTGCTATCTTTAACCAG
Found at i:8335584 original size:44 final size:43
Alignment explanation
Indices: 8335358--8335673 Score: 142
Period size: 44 Copynumber: 7.2 Consensus size: 43
8335348 TCAAGGCAGG
*
8335358 AAGGCAAAATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGA
1 AAGGCAAGATCTG-TGTCTTCAACCAGCTCCACTACAACCGAGA
* * * * * * ** * *
8335402 GATGCAAGGTTTGTGTCTTCGATCTA-CTTCGCGGT-CAA-GGCAGG
1 AAGGCAAGATCTGTGTCTTC-AACCAGC-TC-CACTACAACCG-AGA
8335446 AAGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGA
1 AAGGCAAGATCTG-TGTCTTCAACCAGCTCCACTACAACCGAGA
* * * * * * ** * *
8335490 GATGCAAGGTTTGTGTCTTCGATCTA-CTTCGCGGT-CAA-GGCAGG
1 AAGGCAAGATCTGTGTCTTC-AACCAGC-TC-CACTACAACCG-AGA
*
8335534 AAGGCAAGATCTGTTGTCTTCAACCAACTCCACTACAACCGAGA
1 AAGGCAAGATCTG-TGTCTTCAACCAGCTCCACTACAACCGAGA
* * * * * * * * * * *
8335578 AAGGCAAGGTTTGTATCTTCGATCTGCTTCGCTGTCAA-GGTAGG
1 AAGGCAAGATCTGTGTCTTCAACCAGCTCCACT-ACAACCG-AGA
*
8335622 AAGGCAAGATCTGGTGCCTTCAACCAGCTCCACTACAACCGAGA
1 AAGGCAAGATCT-GTGTCTTCAACCAGCTCCACTACAACCGAGA
*
8335666 GAGGCAAG
1 AAGGCAAG
8335674 GTTTGTTTTC
Statistics
Matches: 186, Mismatches: 66, Indels: 40
0.64 0.23 0.14
Matches are distributed among these distances:
43 36 0.19
44 113 0.61
45 37 0.20
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.23
Consensus pattern (43 bp):
AAGGCAAGATCTGTGTCTTCAACCAGCTCCACTACAACCGAGA
Found at i:8335715 original size:42 final size:42
Alignment explanation
Indices: 8335667--8335802 Score: 98
Period size: 42 Copynumber: 3.2 Consensus size: 42
8335657 CAACCGAGAG
*
8335667 AGGCAAGGTTTGTTTTCGGTCTGCTTCGCTGTTAACGCAGGA
1 AGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
* * ** * * * * **
8335709 AGGCAAGATCTGTTATCTTTAACCAGCTCCACT-ACAAC-CGATGG-
1 AGGCAAGGTTTG-T-T-TTCGATCTGCTTCGCTGTTAACGC-A-GGA
8335753 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
1 AGGCAAGG-TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
8335796 AGGCAAG
1 AGGCAAG
8335803 ATCTGCTATC
Statistics
Matches: 64, Mismatches: 21, Indels: 17
0.63 0.21 0.17
Matches are distributed among these distances:
42 22 0.34
43 14 0.22
44 14 0.22
45 14 0.22
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (42 bp):
AGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
Found at i:8336411 original size:44 final size:44
Alignment explanation
Indices: 8336187--8336499 Score: 146
Period size: 44 Copynumber: 7.2 Consensus size: 44
8336177 CAACTGATGG
* *
8336187 AGGCAAGGCTTGCGTCTTCGATCTGCTTCGCTGTCAAGGCAGGA
1 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGA
** * * * * * * * *
8336231 AGGCAAAATCTGTTGTCTTCAACCAGCTCCACT-ACAA--CCGAGA
1 AGGCAAGGTTTG-TGTCTTCGATCTGCTTCGCTGTCAAGGCAG-GA
*
8336274 GAGGCAAGGTTTGTATCTTCGATCTGCTTCGCTGTCAAGGCAGGA
1 -AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGA
** * * * * * * * *
8336319 AGGCAAAATCTGTTGTCTTCAACCAGCTCCACT-ACAA--CCGAGA
1 AGGCAAGGTTTG-TGTCTTCGATCTGCTTCGCTGTCAAGGCAG-GA
*
8336362 GAGGCAAGGTTTGTATCTTCGATCTGCTTCGCTGTCAAGGCAGGA
1 -AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGA
* * * * * * * *
8336407 AGGCAAGATCTAGTGTCTTCAACCAG-TTCCACT-ACAA--CCGAGA
1 AGGCAAGGT-TTGTGTCTTCGATCTGCTT-CGCTGTCAAGGCAG-GA
* *
8336450 GAGGCAAGGTTTGT-T-TTCGATCTGCTTCGCTGTTAACGCAGGA
1 -AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGA
8336493 AGGCAAG
1 AGGCAAG
8336500 ATCTGTTATC
Statistics
Matches: 186, Mismatches: 63, Indels: 42
0.64 0.22 0.14
Matches are distributed among these distances:
41 9 0.05
42 18 0.10
43 39 0.21
44 70 0.38
45 46 0.25
46 4 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (44 bp):
AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAAGGCAGGA
Found at i:8336461 original size:784 final size:784
Alignment explanation
Indices: 8335123--8336947 Score: 3001
Period size: 784 Copynumber: 2.3 Consensus size: 784
8335113 GCAGAAATGC
8335123 CTCCACTGCAACCGATGGAGGCAATGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCA-AGAAGG
1 CTCCACTGCAACCGATGGAGGCAA-GCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGA-AAGG
* *
8335187 CAAGATCTGCTATCTTTAACCAGCTCCATTGCAACCGATGGAGGCAAGGCTTTATTTTCGATCTG
64 CAAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTG
* * * *
8335252 CTTCGCTGTTAATGCAGGAAGGCAAGATTTGCTATCTTCAACCAGCTCCACTACAACTGATGGAG
129 CTTCGCTGTTAATGCAGGAAGGCAATATCTGCTATCTTTAACCAGCTCCACTGCAACTGATGGAG
* * * * * * * *
8335317 GCAAGGCTTGCGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAAATCTGTTGTCTTCAAC
194 GCAAGACTT-TGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTCAAC
* * * *
8335382 CAGCTCCACTACAACCGAGAGATGCAAGGTTTGTGTCTTCGATCTACTTCGCGGTCAAGGCAGGA
258 CAACTCCACTACAACCGAGAGAGGCAAGGCTTGCGTCTTCGATCTACTTCGCGGTCAAGGCAGGA
* * *
8335447 AGGCAAGATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGATGCAAGGTTTGTGTCTTCGA
323 AGGCAAAATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTATCTTCGA
*
8335512 TCTACTTCGCGGTCAAGGCAGGAAGGCAAGATCTGTTGTCTTCAACCAACTCCACTACAACCGAG
388 TCTACTTCGCGGTCAAGGCAGGAAGGCAAAATCTGTTGTCTTCAACCAACTCCACTACAACCGAG
* *
8335577 AAAGGCAAGGTTTGTATCTTCGATCTGCTTCGCTGTCAAGGTAGGAAGGCAAGATCTGGTGCCTT
453 AAAGGCAAGGTTTGTATCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTAGTGCCTT
*
8335642 CAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTTTTCGGTCTGCTTCGCTGTTAACGCAG
518 CAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTTAACGCAG
8335707 GAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCG
583 GAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCG
8335772 ATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGA
648 ATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGA
* *
8335837 TGGAGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGTAAGATCTGCTATCTT
713 TGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTT
8335902 TAACCAG
778 TAACCAG
* * * *
8335909 CTCTACTGCAACCGATGGAGGCAAGACTTTGTTTTTGATCTGTTTCGCTGTTAATGCAGAAATGC
1 CTCCACTGCAACCGATGGAGGCAAG-CTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGAAAGGC
* * * * * *
8335974 AGGATCTG-TTTCTTTGACCAGTTCCACTGTAACCGATGGAGGCAAGGCTTTGTTTTCGATCTAC
65 AAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGC
* * *
8336038 TTCGCTGTTAATGTAAGAAGGCAATATCTGCTATCTTTAACCAGCTCCATTGCAACTGATGGAGG
130 TTCGCTGTTAATGCAGGAAGGCAATATCTGCTATCTTTAACCAGCTCCACTGCAACTGATGGAGG
* * *
8336103 CAAGACTTTATTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATTTGCTATCTTCAACCA
195 CAAGACTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTCAACCA
* * *
8336168 ACTCCACTACAACTGATG-GAGGCAAGGCTTGCGTCTTCGATCTGCTTCGCTGTCAAGGCAGGAA
260 ACTCCACTACAACCGA-GAGAGGCAAGGCTTGCGTCTTCGATCTACTTCGCGGTCAAGGCAGGAA
8336232 GGCAAAATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTATCTTCGAT
324 GGCAAAATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTATCTTCGAT
* * *
8336297 CTGCTTCGCTGTCAAGGCAGGAAGGCAAAATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGA
389 CTACTTCGCGGTCAAGGCAGGAAGGCAAAATCTGTTGTCTTCAACCAACTCCACTACAACCGAGA
* *
8336362 GAGGCAAGGTTTGTATCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTAGTGTCTTC
454 AAGGCAAGGTTTGTATCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTAGTGCCTTC
*
8336427 AACCAGTTCCACTACAACCGAGAGAGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGG
519 AACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGG
8336492 AAGGCAAGATCTGTTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGA
584 AAGGCAAGATCTGTTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGA
*
8336557 TCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGAT
649 TCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGAT
* *
8336622 GGAGGTAAGGCTTTGTTTTCGATCTGCTTCGTTGTTAATGCAGGAAGGCAAGATCTGCTATCTTT
714 GGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTT
8336687 AACCAG
779 AACCAG
* * *
8336693 CTCCACTGCAATCGATGGAGGCAAGGTTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGC
1 CTCCACTGCAACCGATGGAGGCAA-GCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGAAAGGC
*
8336758 AAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTCGTTTTCGATCTGC
65 AAGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGC
* *
8336823 TTCGCTGTTAATACAGGAAGGCAATATCTGCT-TCTTTAACCAGCTCCACTGCAACCGATGGAGG
130 TTCGCTGTTAATGCAGGAAGGCAATATCTGCTATCTTTAACCAGCTCCACTGCAACTGATGGAGG
* *
8336887 CAAGACTTTGCTTTCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTCA
195 CAAGACTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTCA
8336948 CTAATCTGTT
Statistics
Matches: 956, Mismatches: 78, Indels: 12
0.91 0.07 0.01
Matches are distributed among these distances:
784 695 0.73
785 196 0.21
786 64 0.07
787 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (784 bp):
CTCCACTGCAACCGATGGAGGCAAGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGAAAGGCA
AGATCTGCTATCTTTAACCAGCTCCACTGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCT
TCGCTGTTAATGCAGGAAGGCAATATCTGCTATCTTTAACCAGCTCCACTGCAACTGATGGAGGC
AAGACTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTCAACCAA
CTCCACTACAACCGAGAGAGGCAAGGCTTGCGTCTTCGATCTACTTCGCGGTCAAGGCAGGAAGG
CAAAATCTGTTGTCTTCAACCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTATCTTCGATCT
ACTTCGCGGTCAAGGCAGGAAGGCAAAATCTGTTGTCTTCAACCAACTCCACTACAACCGAGAAA
GGCAAGGTTTGTATCTTCGATCTGCTTCGCTGTCAAGGCAGGAAGGCAAGATCTAGTGCCTTCAA
CCAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAA
GGCAAGATCTGTTATCTTTAACCAGCTCCACTACAACCGATGGAGGCAAGGCTTTGTTTTCGATC
TGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAACCGATGG
AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAA
CCAG
Found at i:8336499 original size:42 final size:42
Alignment explanation
Indices: 8336451--8336586 Score: 98
Period size: 42 Copynumber: 3.2 Consensus size: 42
8336441 CAACCGAGAG
8336451 AGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
1 AGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
* * ** * * * * **
8336493 AGGCAAGATCTGTTATCTTTAACCAGCTCCACT-ACAAC-CGATGG-
1 AGGCAAGGTTTG-T-T-TTCGATCTGCTTCGCTGTTAACGC-A-GGA
*
8336537 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGA
1 AGGCAAGG-TTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
8336580 AGGCAAG
1 AGGCAAG
8336587 ATCTGCTATC
Statistics
Matches: 64, Mismatches: 21, Indels: 17
0.63 0.21 0.17
Matches are distributed among these distances:
42 22 0.34
43 13 0.20
44 14 0.22
45 15 0.23
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (42 bp):
AGGCAAGGTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
Found at i:8338158 original size:7 final size:7
Alignment explanation
Indices: 8338146--8338213 Score: 95
Period size: 7 Copynumber: 9.9 Consensus size: 7
8338136 TAGCCTCTCT
8338146 ATTTTTC
1 ATTTTTC
8338153 ATTTTTC
1 ATTTTTC
8338160 ATTTTTC
1 ATTTTTC
8338167 A-TTTTC
1 ATTTTTC
8338173 ATTTTTC
1 ATTTTTC
8338180 ATTTTTC
1 ATTTTTC
*
8338187 A-TTCTC
1 ATTTTTC
8338193 ATTTTTC
1 ATTTTTC
*
8338200 ATTTATTT
1 ATTT-TTC
8338208 ATTTTT
1 ATTTTT
8338214 ACTCAGAGTG
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
6 11 0.20
7 38 0.69
8 6 0.11
ACGTcount: A:0.16, C:0.13, G:0.00, T:0.71
Consensus pattern (7 bp):
ATTTTTC
Found at i:8338171 original size:13 final size:14
Alignment explanation
Indices: 8338146--8338213 Score: 95
Period size: 13 Copynumber: 4.9 Consensus size: 14
8338136 TAGCCTCTCT
8338146 ATTTTTCATTTTTC
1 ATTTTTCATTTTTC
8338160 ATTTTTCA-TTTTC
1 ATTTTTCATTTTTC
8338173 ATTTTTCATTTTTC
1 ATTTTTCATTTTTC
*
8338187 A-TTCTCATTTTTC
1 ATTTTTCATTTTTC
*
8338200 ATTTATTTATTTTT
1 ATTT-TTCATTTTT
8338214 ACTCAGAGTG
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
13 25 0.52
14 16 0.33
15 7 0.15
ACGTcount: A:0.16, C:0.13, G:0.00, T:0.71
Consensus pattern (14 bp):
ATTTTTCATTTTTC
Found at i:8338173 original size:20 final size:20
Alignment explanation
Indices: 8338148--8338203 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
8338138 GCCTCTCTAT
8338148 TTTTCATTTTTCATTTTTCA
1 TTTTCATTTTTCATTTTTCA
8338168 TTTTCATTTTTCATTTTTCA
1 TTTTCATTTTTCATTTTTCA
*
8338188 TTCTCATTTTTCATTT
1 TTTTCATTTTTCATTT
8338204 ATTTATTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTTCATTTTTCATTTTTCA
Found at i:8339178 original size:47 final size:45
Alignment explanation
Indices: 8339125--8339276 Score: 114
Period size: 47 Copynumber: 3.2 Consensus size: 45
8339115 TCTTTTTTCA
8339125 TTCTTCTTTCTTTTTCTCATTTTCATTTTAATCTTGATTTTGATTTT
1 TTCTT-TTTCTTTTT-TCATTTTCATTTTAATCTTGATTTTGATTTT
** * * * *
8339172 TTCTTCTTTCTTCTTTTTGTTTT-TTTTTTATTTTCATTTTTGATTTT
1 TTCTT-TTTCTT-TTTTCATTTTCATTTTAATCTTGA-TTTTGATTTT
* *
8339219 TGAT-TTTTGATTTTTTTTCATTTTCATTTTGA-CTTTGATTTTGA-TTT
1 T--TCTTTT--TCTTTTTTCATTTTCATTTTAATC-TTGATTTTGATTTT
8339266 TTCTTTTTCTT
1 TTCTTTTTCTT
8339277 CCCTTTTTTG
Statistics
Matches: 82, Mismatches: 14, Indels: 21
0.70 0.12 0.18
Matches are distributed among these distances:
44 3 0.04
45 1 0.01
46 13 0.16
47 34 0.41
48 19 0.23
49 12 0.15
ACGTcount: A:0.11, C:0.11, G:0.06, T:0.72
Consensus pattern (45 bp):
TTCTTTTTCTTTTTTCATTTTCATTTTAATCTTGATTTTGATTTT
Found at i:8339218 original size:6 final size:6
Alignment explanation
Indices: 8339209--8339266 Score: 57
Period size: 6 Copynumber: 9.7 Consensus size: 6
8339199 TTATTTTCAT
* * *
8339209 TTTTGA TTTTTGA TTTTTGA TTTT-- TTTTCA TTTTCA TTTTGA CTTTGA
1 TTTTGA -TTTTGA -TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
8339257 TTTTGA TTTT
1 TTTTGA TTTT
8339267 TCTTTTTCTT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
4 4 0.09
6 29 0.63
7 13 0.28
ACGTcount: A:0.14, C:0.05, G:0.10, T:0.71
Consensus pattern (6 bp):
TTTTGA
Found at i:8339218 original size:24 final size:24
Alignment explanation
Indices: 8339162--8339219 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
8339152 TTAATCTTGA
8339162 TTTTGATTTTTTCTTCTTTCTTCT
1 TTTTGATTTTTTCTTCTTTCTTCT
*
8339186 TTTTG-TTTTTT-TT-TTATTTTCAT
1 TTTTGATTTTTTCTTCTT-TCTTC-T
8339209 TTTTGATTTTT
1 TTTTGATTTTT
8339220 GATTTTTGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 2 0.07
22 6 0.20
23 12 0.40
24 10 0.33
ACGTcount: A:0.07, C:0.09, G:0.05, T:0.79
Consensus pattern (24 bp):
TTTTGATTTTTTCTTCTTTCTTCT
Found at i:8339233 original size:37 final size:35
Alignment explanation
Indices: 8339185--8339272 Score: 115
Period size: 37 Copynumber: 2.5 Consensus size: 35
8339175 TTCTTTCTTC
* *
8339185 TTTTTGTTTTTTTTTTATTTTCATTTTTGATTTTTGA
1 TTTTTGATTTTTTTTTATTTTCA-TTTTGA-CTTTGA
*
8339222 TTTTTGATTTTTTTTCATTTTCATTTTGACTTTGA
1 TTTTTGATTTTTTTTTATTTTCATTTTGACTTTGA
8339257 -TTTTGATTTTTCTTTT
1 TTTTTGATTTTT-TTTT
8339273 TCTTCCCTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
34 11 0.24
35 8 0.17
36 6 0.13
37 21 0.46
ACGTcount: A:0.11, C:0.06, G:0.08, T:0.75
Consensus pattern (35 bp):
TTTTTGATTTTTTTTTATTTTCATTTTGACTTTGA
Found at i:8339235 original size:24 final size:25
Alignment explanation
Indices: 8339208--8339273 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 25
8339198 TTTATTTTCA
*
8339208 TTTTTGATTTTTGATTTTTGA-TTT-
1 TTTTTGATTTTTCA-TTTTGACTTTG
*
8339232 TTTTTCATTTT-CATTTTGACTTTG
1 TTTTTGATTTTTCATTTTGACTTTG
* *
8339256 ATTTTGATTTTTCTTTTT
1 TTTTTGATTTTTCATTTT
8339274 CTTCCCTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
22 6 0.18
23 4 0.12
24 19 0.56
25 5 0.15
ACGTcount: A:0.12, C:0.06, G:0.09, T:0.73
Consensus pattern (25 bp):
TTTTTGATTTTTCATTTTGACTTTG
Found at i:8339242 original size:7 final size:7
Alignment explanation
Indices: 8339202--8339233 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
8339192 TTTTTTTTTA
*
8339202 TTTTCAT
1 TTTTGAT
8339209 TTTTGAT
1 TTTTGAT
8339216 TTTTGAT
1 TTTTGAT
8339223 TTTTGAT
1 TTTTGAT
8339230 TTTT
1 TTTT
8339234 TTTCATTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.12, C:0.03, G:0.09, T:0.75
Consensus pattern (7 bp):
TTTTGAT
Found at i:8342765 original size:110 final size:109
Alignment explanation
Indices: 8342641--8342889 Score: 356
Period size: 109 Copynumber: 2.3 Consensus size: 109
8342631 GGGCACATTC
* * * * *
8342641 CTCGAATTTTCAAACGCAAAAACATTGCCTTA-TTTGAGAATTTTTAAAAGGATATTTAGCCATT
1 CTCGAATTTCCAAACGC-AAAACATTGCCTTATTTTAAAAATTTTTAAAA-GATATTAAACCATT
* *
8342705 TGATTGAATGAGAAAAACCGACACCCAACACCTTAGGGTATGTTTT
64 TGATTGAACGAGAAAAACCGACACCCAACACCTTAGGGCATGTTTT
8342751 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAAATTTTTAAAAGATATTAAACCATTTG
1 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAAATTTTTAAAAGATATTAAACCATTTG
* * *
8342816 GTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTT
66 ATTGAACGAGAAAAACCGACACCCAACACCTTAGGGCATGTTTT
* *
8342860 CTCGAATTTCCCAAACGCTAAATATTGCCT
1 CTCGAATTT-CCAAACGCAAAACATTGCCT
8342890 CAATTAGAAA
Statistics
Matches: 125, Mismatches: 12, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
109 76 0.61
110 49 0.39
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (109 bp):
CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAAATTTTTAAAAGATATTAAACCATTTG
ATTGAACGAGAAAAACCGACACCCAACACCTTAGGGCATGTTTT
Found at i:8343216 original size:17 final size:18
Alignment explanation
Indices: 8343196--8343229 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8343186 TATATGTTTT
8343196 AAGGATAT-TAAATATAA
1 AAGGATATGTAAATATAA
*
8343213 AAGGTTATGTAAATATA
1 AAGGATATGTAAATATA
8343230 TATACATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (18 bp):
AAGGATATGTAAATATAA
Found at i:8343474 original size:3 final size:3
Alignment explanation
Indices: 8343461--8343517 Score: 105
Period size: 3 Copynumber: 19.0 Consensus size: 3
8343451 AAAATAGAAC
*
8343461 TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8343509 TAA TAA TAA
1 TAA TAA TAA
8343518 CATGAAATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8347266 original size:110 final size:109
Alignment explanation
Indices: 8347142--8347390 Score: 356
Period size: 109 Copynumber: 2.3 Consensus size: 109
8347132 GGGCACATTC
* * * * *
8347142 CTCGAATTTTCAAACGCAAAAACATTGCCTTA-TTTGAGAATTTTTAAAAGGATATTTAGCCATT
1 CTCGAATTTCCAAACGC-AAAACATTGCCTTATTTTAAAAATTTTTAAAA-GATATTAAACCATT
* *
8347206 TGATTGAATGAGAAAAACCGACACCCAACACCTTAGGGTATGTTTT
64 TGATTGAACGAGAAAAACCGACACCCAACACCTTAGGGCATGTTTT
8347252 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAAATTTTTAAAAGATATTAAACCATTTG
1 CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAAATTTTTAAAAGATATTAAACCATTTG
* * *
8347317 GTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCATGTTTT
66 ATTGAACGAGAAAAACCGACACCCAACACCTTAGGGCATGTTTT
* *
8347361 CTCGAATTTCCCAAACGCTAAATATTGCCT
1 CTCGAATTT-CCAAACGCAAAACATTGCCT
8347391 CAATTAGAAA
Statistics
Matches: 125, Mismatches: 12, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
109 76 0.61
110 49 0.39
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (109 bp):
CTCGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAAATTTTTAAAAGATATTAAACCATTTG
ATTGAACGAGAAAAACCGACACCCAACACCTTAGGGCATGTTTT
Found at i:8347717 original size:17 final size:18
Alignment explanation
Indices: 8347697--8347730 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8347687 TATATGTTTT
8347697 AAGGATAT-TAAATATAA
1 AAGGATATGTAAATATAA
*
8347714 AAGGTTATGTAAATATA
1 AAGGATATGTAAATATA
8347731 TATACATGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (18 bp):
AAGGATATGTAAATATAA
Found at i:8347972 original size:3 final size:3
Alignment explanation
Indices: 8347964--8347988 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8347954 AATAGAACTG
8347964 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
8347989 CATGAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:8349457 original size:211 final size:211
Alignment explanation
Indices: 8349093--8349489 Score: 758
Period size: 211 Copynumber: 1.9 Consensus size: 211
8349083 ATGGGCTAGG
*
8349093 GTTAGGTAGATTGGGCTGAATTGGGTTGCTGATTTGGGCTTTGGTTTTGGTGGGTTAGGCTTGTA
1 GTTAGGTAGATTGGGCTGAATTGGGTTGCTGATTTGGGCTTTGGTTTTGGTGGGTTAGGCTTATA
*
8349158 ATTGGGTTGAGGGTTTGCTGGGCTTTGGGCAAAATTGGGTTGTTTGGGGTTTAGTTATTTTTTGG
66 ATTGGGTTGAGGGTTTGCTGGGCTTTGGGCAAAATTGGGCTGTTTGGGGTTTAGTTATTTTTTGG
8349223 GTCTAAATAGTTTGTTTATTTTGTAAATGGGCCCGGGCGAAATTGGGCTTCTACAGCTGTCCCTC
131 GTCTAAATAGTTTGTTTATTTTGTAAATGGGCCCGGGCGAAATTGGGCTTCTACAGCTGTCCCTC
8349288 TTTGCTTCATTGTCGT
196 TTTGCTTCATTGTCGT
8349304 GTTAGGTAGATTGGGCTGAATTGGGTTGCTGATTTGGGCTTTGGTTTTGGTGGGTTAGGCTTATA
1 GTTAGGTAGATTGGGCTGAATTGGGTTGCTGATTTGGGCTTTGGTTTTGGTGGGTTAGGCTTATA
8349369 ATTGGGTTGAGGGTTTGCTGGGCTTTGGGCAAAATTGGGCTGTTTGGGGTTTAGTTATTTTTTGG
66 ATTGGGTTGAGGGTTTGCTGGGCTTTGGGCAAAATTGGGCTGTTTGGGGTTTAGTTATTTTTTGG
* *
8349434 GTCTGAATGGTTTGTTTATTTTGTAAATGGGCCCGGGCGAAATTGGGCTTCTACAG
131 GTCTAAATAGTTTGTTTATTTTGTAAATGGGCCCGGGCGAAATTGGGCTTCTACAG
8349490 TATGAACTAA
Statistics
Matches: 182, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
211 182 1.00
ACGTcount: A:0.15, C:0.10, G:0.35, T:0.41
Consensus pattern (211 bp):
GTTAGGTAGATTGGGCTGAATTGGGTTGCTGATTTGGGCTTTGGTTTTGGTGGGTTAGGCTTATA
ATTGGGTTGAGGGTTTGCTGGGCTTTGGGCAAAATTGGGCTGTTTGGGGTTTAGTTATTTTTTGG
GTCTAAATAGTTTGTTTATTTTGTAAATGGGCCCGGGCGAAATTGGGCTTCTACAGCTGTCCCTC
TTTGCTTCATTGTCGT
Found at i:8350918 original size:29 final size:29
Alignment explanation
Indices: 8350861--8350918 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
8350851 TTCTTTTTAT
* *
8350861 GTTTTTTAGTTTTATATTTATATTTTAAA
1 GTTTTTTAATTTTATATTTATATTATAAA
8350890 GTTTTTATAATTTTAT-TTTAT-TTAATAAA
1 GTTTTT-TAATTTTATATTTATATT-ATAAA
8350919 AATGACTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 2 0.08
29 15 0.60
30 8 0.32
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (29 bp):
GTTTTTTAATTTTATATTTATATTATAAA
Found at i:8350969 original size:24 final size:22
Alignment explanation
Indices: 8350932--8350980 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 22
8350922 GACTAAATTG
*
8350932 TTTAATTTTTATAATTTTATAAT
1 TTTAATTTTTATAATTATA-AAT
8350955 TTTAATGTTTTATAATTATAAAT
1 TTTAAT-TTTTATAATTATAAAT
8350978 TTT
1 TTT
8350981 TGAATATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
TTTAATTTTTATAATTATAAAT
Found at i:8350981 original size:24 final size:23
Alignment explanation
Indices: 8350925--8350990 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 23
8350915 TAAAAATGAC
*
8350925 TAAATTGTTTAATTTTTATAATTT
1 TAAATT-TTTAATTTTTATAATTA
8350949 TATAA-TTTTAATGTTTTATAATTA
1 TA-AATTTTTAAT-TTTTATAATTA
*
8350973 TAAATTTTTGAATATTTA
1 TAAATTTTT-AATTTTTA
8350991 GAATAATGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
23 8 0.22
24 23 0.64
25 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (23 bp):
TAAATTTTTAATTTTTATAATTA
Done.