Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 26 of 203
Found at i:8684948 original size:33 final size:33
Alignment explanation
Indices: 8684906--8684968 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
8684896 ATTAATCCTT
8684906 TCTCAATTTCC-TCTC-AATTTCCTCTCAAATTGC
1 TCTCAATTTCCTTC-CAAATTT-CTCTCAAATTGC
8684939 TCTCAATTTCCTTCCAAATTTCTCTCAAAT
1 TCTCAATTTCCTTCCAAATTTCTCTCAAAT
8684969 CCATAGTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 21 0.75
34 7 0.25
ACGTcount: A:0.24, C:0.32, G:0.02, T:0.43
Consensus pattern (33 bp):
TCTCAATTTCCTTCCAAATTTCTCTCAAATTGC
Found at i:8686852 original size:18 final size:18
Alignment explanation
Indices: 8686829--8686871 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
8686819 TGCTAGGTGC
* *
8686829 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
8686847 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
8686865 GTTTCCT
1 GTATCCT
8686872 TTTTCTAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:8687345 original size:49 final size:49
Alignment explanation
Indices: 8687292--8687412 Score: 233
Period size: 49 Copynumber: 2.5 Consensus size: 49
8687282 GTTTATATTA
8687292 ATGTAATAAAATACAAAATAGTTTAATTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTAATTTGAATATTTTGATATTATTTG
*
8687341 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTAATTTGAATATTTTGATATTATTTG
8687390 ATGTAATAAAATACAAAATAGTT
1 ATGTAATAAAATACAAAATAGTT
8687413 AATATTCTTA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.45, C:0.02, G:0.10, T:0.43
Consensus pattern (49 bp):
ATGTAATAAAATACAAAATAGTTTAATTTGAATATTTTGATATTATTTG
Found at i:8690734 original size:125 final size:125
Alignment explanation
Indices: 8690512--8690924 Score: 612
Period size: 125 Copynumber: 3.3 Consensus size: 125
8690502 CCCAAACATG
* *
8690512 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTATTTCAAAAATTCTTTTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTTTTTTGATAAAGCATCCTGC
* *
8690577 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTTATCTCGAAATTATTTTTTCAGGAC
66 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTAAACTCGAAATTATTTTTTCAGGAC
* *
8690637 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTTTTTTGATAAAGCATCTTGG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTTTTTTGATAAAGCATCCTGC
*
8690702 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
66 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTAAACTCGAAATTATTTTTTCAGGAC
* * * * * * *
8690762 CTACAGTAGTAAAAGCACGTTCACGTGGGAGCGATTTCAGAAATTCTTCTT-ATAAAACATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATT-TTTTTGATAAAGCATCCTG
* * *
8690826 CTTGAAGTGTTTTTTATACTATTTGCTCAAAAACGTAAACTCAAAATTATTTTTTCAGGAC
65 CTTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTAAACTCGAAATTATTTTTTCAGGAC
* ** * *
8690887 CTACTGTATCAAAAATGGGTCCACGTGAGAGCGATTTC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTC
8690925 CTTAATAAAT
Statistics
Matches: 259, Mismatches: 28, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
125 255 0.98
126 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTTTTTTGATAAAGCATCCTGC
TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTAAACTCGAAATTATTTTTTCAGGAC
Found at i:8691131 original size:21 final size:21
Alignment explanation
Indices: 8691105--8691146 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8691095 TCCTAAAAAT
* *
8691105 CCTAAAAACCCTAACCCTAAC
1 CCTAAAAACCCAAAACCTAAC
8691126 CCTAAAAACCCAAAACCTAAC
1 CCTAAAAACCCAAAACCTAAC
8691147 GTGGGAGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.48, C:0.40, G:0.00, T:0.12
Consensus pattern (21 bp):
CCTAAAAACCCAAAACCTAAC
Found at i:8694050 original size:17 final size:17
Alignment explanation
Indices: 8694028--8694063 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
8694018 TAAAGTGTTC
8694028 TAATTACATCTTTAAAT
1 TAATTACATCTTTAAAT
*
8694045 TAATTACATTTTTAAAT
1 TAATTACATCTTTAAAT
8694062 TA
1 TA
8694064 TCGATGTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (17 bp):
TAATTACATCTTTAAAT
Found at i:8694198 original size:18 final size:19
Alignment explanation
Indices: 8694162--8694197 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
8694152 GCATAATTTT
8694162 TAAAAGTAAAAGCTAAAAA
1 TAAAAGTAAAAGCTAAAAA
8694181 TAAAA-TAAAA-CTAAAAA
1 TAAAAGTAAAAGCTAAAAA
8694198 AAGGACTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 5 0.29
19 5 0.29
ACGTcount: A:0.72, C:0.06, G:0.06, T:0.17
Consensus pattern (19 bp):
TAAAAGTAAAAGCTAAAAA
Found at i:8705596 original size:7 final size:7
Alignment explanation
Indices: 8705584--8705610 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8705574 TGCGCAAATA
8705584 TAAATTT
1 TAAATTT
8705591 TAAATTT
1 TAAATTT
8705598 TAAATTT
1 TAAATTT
8705605 TAAATT
1 TAAATT
8705611 AACATTCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TAAATTT
Found at i:8706095 original size:23 final size:25
Alignment explanation
Indices: 8706065--8706115 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
8706055 AAGTGATTAA
8706065 ATAATAA-TCCA-AACAAATTAAAT
1 ATAATAATTCCACAACAAATTAAAT
* *
8706088 ATAATAATTTCACAACAATTTAAAT
1 ATAATAATTCCACAACAAATTAAAT
8706113 ATA
1 ATA
8706116 CCTAATAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 7 0.29
24 3 0.12
25 14 0.58
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (25 bp):
ATAATAATTCCACAACAAATTAAAT
Found at i:8706986 original size:11 final size:11
Alignment explanation
Indices: 8706970--8706999 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
8706960 GTAAAAAGGC
8706970 AGAAATAGCAG
1 AGAAATAGCAG
8706981 AGAAATAGCAG
1 AGAAATAGCAG
8706992 AGAAATAG
1 AGAAATAG
8707000 AAGCAAGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.57, C:0.07, G:0.27, T:0.10
Consensus pattern (11 bp):
AGAAATAGCAG
Found at i:8710943 original size:22 final size:22
Alignment explanation
Indices: 8710883--8710940 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
8710873 AATCTTCAAG
8710883 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
8710902 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
8710924 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
8710941 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:8712759 original size:51 final size:51
Alignment explanation
Indices: 8712582--8712920 Score: 284
Period size: 51 Copynumber: 6.7 Consensus size: 51
8712572 TATCATTCGA
*
8712582 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATC--AG-TT-TTACAG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAAGCTTCTT--GG
* *
8712631 TTCACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AA--TTTTTACGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAAGCTTCTT--GG
* *
8712681 CT-TACGTAGTAGCCTTCACACAGTACTACACACGTGATCAAAGCTTCTTGG
1 -TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAAGCTTCTTGG
* * * * ** * ***
8712732 TACACATAGTAGCCTTCACTTAGTACTACACATGTAATCGTAGTTTACCAAG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAAGCTT-CTTGG
* * * *
8712784 -ACACGTAGTAGCATTCACACAGTACTACACGCGTGCTCAAAGCTTCTTGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAAGCTTCTTGG
* * * * * * * * *
8712834 TACACATAGTAGCCTTCACTTAGTACTACAAATGTGACCATTA-CTTATCGA
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCA-AAGCTTCTTGG
*
8712885 TACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTG
8712921 TTCATCGATA
Statistics
Matches: 231, Mismatches: 49, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
49 40 0.17
50 44 0.19
51 140 0.61
52 3 0.01
53 4 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (51 bp):
TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAAGCTTCTTGG
Found at i:8712824 original size:102 final size:102
Alignment explanation
Indices: 8712583--8712920 Score: 359
Period size: 102 Copynumber: 3.3 Consensus size: 102
8712573 ATCATTCGAT
* * * *
8712583 ACACGTAGTAGCCTTCACATAGTACTACACACGTGATC--AG-TT-TTACAGTTCACGTAGTAGC
1 ACACGTAGTAGCCTTCACACAGTACTACACACGTGATCAAAGCTTCTT--GGTACACATAGTAGC
* * * * * * **
8712644 CTTCACATAGTACTACACACGTGATCAATTTTTA-C--G
64 CTTCACTTAGTACTACAAATGTAACCAGTACTTACCAAG
*
8712680 GCTTACGTAGTAGCCTTCACACAGTACTACACACGTGATCAAAGCTTCTTGGTACACATAGTAGC
1 AC--ACGTAGTAGCCTTCACACAGTACTACACACGTGATCAAAGCTTCTTGGTACACATAGTAGC
* * *
8712745 CTTCACTTAGTACTACACATGTAATC-GTAGTTTACCAAG
64 CTTCACTTAGTACTACAAATGTAACCAGTA-CTTACCAAG
* * *
8712784 ACACGTAGTAGCATTCACACAGTACTACACGCGTGCTCAAAGCTTCTTGGTACACATAGTAGCCT
1 ACACGTAGTAGCCTTCACACAGTACTACACACGTGATCAAAGCTTCTTGGTACACATAGTAGCCT
* * * * *
8712849 TCACTTAGTACTACAAATGTGACCATTACTTATCGAT
66 TCACTTAGTACTACAAATGTAACCAGTACTTACCAAG
8712886 ACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 ACACGTAGTAGCCTTCACACAGTACTACACACGTG
8712921 TTCATCGATA
Statistics
Matches: 206, Mismatches: 24, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
97 1 0.00
99 35 0.17
100 1 0.00
101 41 0.20
102 122 0.59
103 4 0.02
104 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (102 bp):
ACACGTAGTAGCCTTCACACAGTACTACACACGTGATCAAAGCTTCTTGGTACACATAGTAGCCT
TCACTTAGTACTACAAATGTAACCAGTACTTACCAAG
Found at i:8712895 original size:153 final size:149
Alignment explanation
Indices: 8712578--8712919 Score: 361
Period size: 153 Copynumber: 2.3 Consensus size: 149
8712568 TTTTTATCAT
* *
8712578 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAGTTTTACAGTTCACGTAGTAG
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTAATCAGTTTTACAGTACACGTAGTAG
* * * * *
8712643 CCTTCACATAGTACTACACACGTGATCAATTTTTACGGCTTACGTAGTAGCCTTCACACAGTACT
66 CATTCACACAGTACTACACACGTGATCAATTCTTA-GGCTCACATAGTAGCCTTCACACAGTACT
* * *
8712708 ACACACGTGATCAAAGCTTC
130 ACAAACGTGACCAAAGCTTA
* * * * *
8712728 TTGGTACACATAGTAGCCTTCACTTAGTACTACACATGTAATC-GTAGTTTACCAAG-ACACGTA
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTAATCAGT--TTTA-C-AGTACACGTA
* * *
8712791 GTAGCATTCACACAGTACTACACGCGTGCTCAAAGCTTCTT-GG-TACACATAGTAGCCTTCACT
62 GTAGCATTCACACAGTACTACACACGTGATC-AA--TTCTTAGGCT-CACATAGTAGCCTTCACA
* * *
8712854 TAGTACTACAAATGTGACCATTA-CTTA
123 CAGTACTACAAACGTGACCA-AAGCTTA
*
8712881 TCGATACACGTAGTAGCCTTCACACAGTACTACACACGT
1 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGT
8712920 GTTCATCGAT
Statistics
Matches: 156, Mismatches: 27, Indels: 15
0.79 0.14 0.08
Matches are distributed among these distances:
149 2 0.01
150 37 0.24
151 4 0.03
152 35 0.22
153 73 0.47
154 1 0.01
155 4 0.03
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (149 bp):
TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTAATCAGTTTTACAGTACACGTAGTAG
CATTCACACAGTACTACACACGTGATCAATTCTTAGGCTCACATAGTAGCCTTCACACAGTACTA
CAAACGTGACCAAAGCTTA
Found at i:8714420 original size:42 final size:38
Alignment explanation
Indices: 8714374--8714459 Score: 93
Period size: 42 Copynumber: 2.2 Consensus size: 38
8714364 ATACGTACAC
*
8714374 ATTTTTTAAT-TTTTATAAATATATATACACATACTTTTATAT
1 ATTTTTT-ATGTTTCATAAAT-T-TATACACATAC--TTATAT
* *
8714416 ATTTTCTATGTTTCATAAATTTATATACATACTTATAT
1 ATTTTTTATGTTTCATAAATTTATACACATACTTATAT
8714454 ATTTTT
1 ATTTTT
8714460 ACATATTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
38 11 0.28
40 10 0.26
41 3 0.08
42 15 0.38
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.56
Consensus pattern (38 bp):
ATTTTTTATGTTTCATAAATTTATACACATACTTATAT
Found at i:8716892 original size:19 final size:20
Alignment explanation
Indices: 8716849--8716892 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
8716839 TGCCTTTTTA
*
8716849 GCATT-CATTTCATTCATCT
1 GCATTACATTTCATTCATAT
*
8716868 GTATTACATTTCA-TCATAT
1 GCATTACATTTCATTCATAT
8716887 GCATTA
1 GCATTA
8716893 AATTCTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.45
Consensus pattern (20 bp):
GCATTACATTTCATTCATAT
Found at i:8723121 original size:16 final size:16
Alignment explanation
Indices: 8723097--8723130 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
8723087 TGCCTCTTTC
*
8723097 ACCTTTTCATGTCATG
1 ACCTCTTCATGTCATG
8723113 ACCTCTTCATGTCATG
1 ACCTCTTCATGTCATG
8723129 AC
1 AC
8723131 TTTTCTCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (16 bp):
ACCTCTTCATGTCATG
Found at i:8724962 original size:44 final size:44
Alignment explanation
Indices: 8724899--8725317 Score: 238
Period size: 44 Copynumber: 9.7 Consensus size: 44
8724889 GTGACGAATC
8724899 TTATCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAA-A
1 TTATCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAATA
8724942 TTTATCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAA-A
1 -TTATCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAATA
* * *
8724986 TTTATCTCCTTGAAGTTGCAGTGG---AG--TAGA-T-ACAAATC
1 -TTATCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAATA
* * * * *
8725024 TTACCTCCCTTAAGTTGCAGTGGAACAGATTGAAGAT-GCAAATA
1 TTATCTCCCTGAAGTTGCAGTGGAAAAGATTAAAG-TCACAAATA
* * * *
8725068 TTATTTCCCTGAAATTGTAGTGGAACAGATTAAAG-CGACAAATA
1 TTATCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTC-ACAAATA
* ** ** * * ** *
8725112 TGATCTCTTTGAAGTTGCAGTGGAGCAGATTGAAG-AATTAATC
1 TTATCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAATA
* * * * ** * * *
8725155 TTATTTCTCTAAAGTTGCAGTAGAGCATATTGAAG-CTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTC-ACAAATA
* * * ** * * * *
8725199 TAATCTCCCTAAAGTTACAGTGGAGCAGATTGAAGTTACGAATC
1 TTATCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAATA
* ** *
8725243 TTATCTTCCTGAAGTTGCAGTGG-AGCGAATTAAAG-CTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAAAAG-ATTAAAGTC-ACAAATA
* * * *
8725287 TCATTTCCCTGAAGTTCCAGTGGAACAGATT
1 TTATCTCCCTGAAGTTGCAGTGGAAAAGATT
8725318 GAAGCTACAA
Statistics
Matches: 298, Mismatches: 62, Indels: 30
0.76 0.16 0.08
Matches are distributed among these distances:
37 25 0.08
38 1 0.00
39 3 0.01
40 2 0.01
41 2 0.01
42 2 0.01
43 34 0.11
44 227 0.76
45 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAATA
Found at i:8725090 original size:81 final size:80
Alignment explanation
Indices: 8724939--8725091 Score: 184
Period size: 81 Copynumber: 1.9 Consensus size: 80
8724929 TAAAGTCACA
* * *
8724939 AAATTTATCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAAATTTATCTCCTTGAAGTTG
1 AAATTTACCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAAATTTATCTCCCTGAAATTG
8725004 CAGTGGAGTAGATAC
66 CAGTGGAGTAGATAC
* * * * *
8725019 AAATCTTACCTCCCTTAAGTTGCAGTGGAACAGATTGAAGAT-GC-AAATATTATTTCCCTGAAA
1 AAAT-TTACCTCCCTGAAGTTGCAGTGGAAAAGATTAAAG-TCACAAAAT-TTATCTCCCTGAAA
*
8725082 TTGTAGTGGA
63 TTGCAGTGGA
8725092 ACAGATTAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
80 8 0.13
81 52 0.85
82 1 0.02
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (80 bp):
AAATTTACCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAAATTTATCTCCCTGAAATTG
CAGTGGAGTAGATAC
Found at i:8725118 original size:125 final size:125
Alignment explanation
Indices: 8724895--8725141 Score: 322
Period size: 125 Copynumber: 2.0 Consensus size: 125
8724885 CGTCGTGACG
* *
8724895 AATCTTATCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAAATTTATCTCCCTGAAGTTG
1 AATCTTACCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAAATTTATCTCCCTGAAATTG
* *
8724960 CAGTGGAAAAGATTAAAGTCACAAAATTTATCTCCTTGAAGTTGCAGTGGAGTAGATACA
66 CAGTGGAAAAGATTAAAGTCACAAAATTGATCTCCTTGAAGTTGCAGTGGAGCAGATACA
* * * * *
8725020 AATCTTACCTCCCTTAAGTTGCAGTGGAACAGATTGAAGAT-GC-AAATATTATTTCCCTGAAAT
1 AATCTTACCTCCCTGAAGTTGCAGTGGAAAAGATTAAAG-TCACAAAAT-TTATCTCCCTGAAAT
* * *
8725083 TGTAGTGGAACAGATTAAAG-CGAC-AAATATGATCTCTTTGAAGTTGCAGTGGAGCAGAT
64 TGCAGTGGAAAAGATTAAAGTC-ACAAAAT-TGATCTCCTTGAAGTTGCAGTGGAGCAGAT
8725142 TGAAGAATTA
Statistics
Matches: 106, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
124 9 0.08
125 96 0.91
126 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (125 bp):
AATCTTACCTCCCTGAAGTTGCAGTGGAAAAGATTAAAGTCACAAAATTTATCTCCCTGAAATTG
CAGTGGAAAAGATTAAAGTCACAAAATTGATCTCCTTGAAGTTGCAGTGGAGCAGATACA
Found at i:8725323 original size:44 final size:44
Alignment explanation
Indices: 8725016--8725411 Score: 314
Period size: 44 Copynumber: 8.9 Consensus size: 44
8725006 GTGGAGTAGA
** * * *
8725016 TACAAATCTTACCTCCCTTAAGTTGCAGTGGAACAGATTGAAGA
1 TACAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * * * * *
8725060 TGCAAATATTATTTCCCTGAAATTGTAGTGGAACAGATTAAAGC
1 TACAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * * * **
8725104 GACAAATATGATCTCTTTGAAGTTGCAGTGGAGCAGATTGAAG-
1 TACAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* ** * * * *
8725147 AATTAATCTTATTTCTCTAAAGTTGCAGTAGAGCATATTGAAGC
1 TACAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* * * * *
8725191 TACAAATCTAATCTCCCTAAAGTTACAGTGGAGCAGATTGAAGT
1 TACAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
* *
8725235 TACGAATCTTATCTT-CCTGAAGTTGCAGTGGAGC-GAATTAAAGC
1 TACAAATCTTAT-TTCCCTGAAGTTGCAGTGGAGCAG-ATTGAAGC
* * *
8725279 TACAAATCTCATTTCCCTGAAGTTCCAGTGGAACAGATTGAAGCTAC
1 TACAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAG---C
*
8725326 AAGTTACAAATCTTA-TTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC
1 ----TACAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
** * * **
8725373 TATTAATCTTATATCCCTGAAGTTGTAACGGAGCAGATT
1 TACAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATT
8725412 AAAGTAGCAA
Statistics
Matches: 277, Mismatches: 62, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
43 45 0.16
44 190 0.69
45 2 0.01
47 2 0.01
50 28 0.10
51 10 0.04
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (44 bp):
TACAAATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
Found at i:8725358 original size:50 final size:51
Alignment explanation
Indices: 8725279--8725374 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 51
8725269 GAATTAAAGC
8725279 TACAAATCTCATTTCCCTGAAGTTCCAGTGGAACAGATTGAAGCTACAAGT
1 TACAAATCTCATTTCCCTGAAGTTCCAGTGGAACAGATTGAAGCTACAAGT
* * **
8725330 TACAAATCTTA-TTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTA
1 TACAAATCTCATTTCCCTGAAGTTCCAGTGGAACAGATTGAAGCTA
8725375 TTAATCTTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
50 31 0.76
51 10 0.24
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (51 bp):
TACAAATCTCATTTCCCTGAAGTTCCAGTGGAACAGATTGAAGCTACAAGT
Found at i:8725410 original size:94 final size:95
Alignment explanation
Indices: 8725231--8725411 Score: 222
Period size: 94 Copynumber: 1.9 Consensus size: 95
8725221 GAGCAGATTG
* * * *
8725231 AAGTTACGAATCTTATCTTCCTGAAGTTGCAGTGGAGCGAATTAAAGCTACAAATCTCATTTCCC
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGAGAATTAAAGCTACAAATCTCATATCCC
**
8725296 TGAAGTTCCAGTGGAACAGATTGAAGCTAC
66 TGAAGTTCCAACGGAACAGATTGAAGCTAC
* ** *
8725326 AAGTTACAAATCTTAT-TCCCTGAAGTTGCAGTGGAGTAG-ATTGAAGCTATTAATCTTATATCC
1 AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAG-AGAATTAAAGCTACAAATCTCATATCC
** *
8725389 CTGAAGTTGTAACGGAGCAGATT
65 CTGAAGTTCCAACGGAACAGATT
8725412 AAAGTAGCAA
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
94 56 0.78
95 16 0.22
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30
Consensus pattern (95 bp):
AAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGAGAATTAAAGCTACAAATCTCATATCCC
TGAAGTTCCAACGGAACAGATTGAAGCTAC
Found at i:8726929 original size:4 final size:4
Alignment explanation
Indices: 8726920--8726957 Score: 58
Period size: 4 Copynumber: 9.5 Consensus size: 4
8726910 TTACAAGCTG
* *
8726920 TTTA TTTA TTTA TTTA TCTA TTCA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
8726958 ACCTTTTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:8727080 original size:24 final size:24
Alignment explanation
Indices: 8727030--8727081 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
8727020 GTCATTATTT
* *
8727030 TATTATTATTTTTTGTTCTTGTTA
1 TATTATTATTTCTTGTTATTGTTA
*
8727054 TATTATTATTTCTT-TTATTTTTGA
1 TATTATTATTTCTTGTTATTGTT-A
8727078 TATT
1 TATT
8727082 TTCATGTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.19, C:0.04, G:0.06, T:0.71
Consensus pattern (24 bp):
TATTATTATTTCTTGTTATTGTTA
Found at i:8728832 original size:14 final size:13
Alignment explanation
Indices: 8728805--8728834 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
8728795 AGTCTATTTA
8728805 TAAAATTTAAATT
1 TAAAATTTAAATT
8728818 TAAAATTTGAAATT
1 TAAAATTT-AAATT
8728832 TAA
1 TAA
8728835 GTATACAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (13 bp):
TAAAATTTAAATT
Found at i:8728977 original size:19 final size:19
Alignment explanation
Indices: 8728925--8728977 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
8728915 GGATTTGTTG
*
8728925 AATTCAATAATTTCTTTAAA
1 AATTCAA-AATTTCTTAAAA
* *
8728945 ATTTCAAAGTTTTCTTAAAA
1 AATTCAAA-ATTTCTTAAAA
8728965 AATTCAAAATTTC
1 AATTCAAAATTTC
8728978 AATAATAGAT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
19 5 0.19
20 22 0.81
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.43
Consensus pattern (19 bp):
AATTCAAAATTTCTTAAAA
Found at i:8732977 original size:14 final size:14
Alignment explanation
Indices: 8732958--8732992 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
8732948 CTATTAAATT
8732958 AAATAAATATTTTA
1 AAATAAATATTTTA
*
8732972 AAATAACTATTTTA
1 AAATAAATATTTTA
8732986 AAA-AAAT
1 AAATAAAT
8732993 TTGATAATCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 3 0.16
14 16 0.84
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATAAATATTTTA
Found at i:8737903 original size:23 final size:23
Alignment explanation
Indices: 8737873--8737920 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
8737863 AACAATAAGT
8737873 ATGATTTATCATCGTTGAAGCAA
1 ATGATTTATCATCGTTGAAGCAA
8737896 ATGATTTATCATCGTTGAAGCAA
1 ATGATTTATCATCGTTGAAGCAA
8737919 AT
1 AT
8737921 TATCTCTACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (23 bp):
ATGATTTATCATCGTTGAAGCAA
Found at i:8740395 original size:59 final size:58
Alignment explanation
Indices: 8740272--8740407 Score: 154
Period size: 59 Copynumber: 2.3 Consensus size: 58
8740262 AAGATTAGGG
* *
8740272 GCTAACTTGGATAAAAAAATTCAGACCCTAACGTGAGAACAATTGCCAAGTTTAAGGA
1 GCTAACTTGGATAAAAAAATCCAGACCCTAACGTGAGAACAACTGCCAAGTTTAAGGA
* *
8740330 GC-AACTTGGATAAAATAAAGTCCA-AGCCCTAATGTGGGAACAACTGCCAAGTTT-A-GA
1 GCTAACTTGGATAAAA-AAA-TCCAGA-CCCTAACGTGAGAACAACTGCCAAGTTTAAGGA
* *
8740387 GACTAACTTAGAAAAAAAAAT
1 G-CTAACTTGGATAAAAAAAT
8740408 TCAAACTGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
57 17 0.25
58 11 0.16
59 39 0.58
ACGTcount: A:0.43, C:0.17, G:0.18, T:0.21
Consensus pattern (58 bp):
GCTAACTTGGATAAAAAAATCCAGACCCTAACGTGAGAACAACTGCCAAGTTTAAGGA
Found at i:8741281 original size:16 final size:16
Alignment explanation
Indices: 8741257--8741294 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
8741247 TTTGGTTCGC
* *
8741257 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
8741273 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
8741289 TGTAAT
1 TGTAAT
8741295 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:8741378 original size:39 final size:43
Alignment explanation
Indices: 8741273--8741382 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
8741263 GGATTAGAGG
8741273 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
8741318 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
8741358 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
8741383 TAATGAAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:8741654 original size:120 final size:120
Alignment explanation
Indices: 8741510--8741732 Score: 428
Period size: 120 Copynumber: 1.9 Consensus size: 120
8741500 ATCATATTTA
8741510 AACATAATTATTATTAAATATATTATAATTAAAAGATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAAGATATAATTTAATAAAATTCTTAATAATCAA
8741575 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
* *
8741630 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAAGATATAATTTAATAAAATTCTTAATAATCAA
8741695 TATTCTTATATGAATTTACTCAAATCATAATATATGAT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGAT
8741733 TGTTATTGCT
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 101 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAAGATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
Found at i:8741675 original size:14 final size:15
Alignment explanation
Indices: 8741626--8741677 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
8741616 ATAAAATATA
8741626 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
8741641 TATTAAATATATTAT
1 AATTAAATATATTAT
8741656 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
8741669 AATTTAATA
1 AATTAAATA
8741678 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:8746943 original size:132 final size:131
Alignment explanation
Indices: 8746669--8747009 Score: 387
Period size: 132 Copynumber: 2.6 Consensus size: 131
8746659 GAGATCCGAT
* *
8746669 ATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCACGTTTGCTCAAAATAA
1 ATTTGGCAATTCG-GGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAA
* * * ** *
8746734 TCGAATATCCCTTCAAAATTTCACTCAAGCCTTTTAAGAACTCTTTAAAACGAAGGCAAGGTTTG
65 TCGAATATCCCTTCAAAATTCCACTCAAGCCTTCTAAGAAATCTTTAAAACGAAGGCAAGACTCG
8746799 AC
130 AC
* * *
8746801 ATTTGGCAATTCGTAGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTTAAAATGA
1 ATTTGGCAATTCG-GGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAA
* * * * * *
8746866 TCGAATATCCCTTCAAAATTCCATTCATGTCTTCTAA-AAATCATTTAAAATGAAGGTAATACTC
65 TCGAATATCCCTTCAAAATTCCACTCAAGCCTTCTAAGAAATC-TTTAAAACGAAGGCAAGACTC
**
8746930 GGT
129 GAC
* * * * ** * * *
8746933 GTTTGACAATTCGGGAATCATGCCCTATCGTGCTGGGTTGTGATCTCTCATTTGCTCAAAACAAT
1 ATTTGGCAATTCGGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAAT
*
8746998 CGAATATTCCTT
66 CGAATATCCCTT
8747010 TAGGTTTACA
Statistics
Matches: 175, Mismatches: 33, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
131 57 0.33
132 118 0.67
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (131 bp):
ATTTGGCAATTCGGGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAAT
CGAATATCCCTTCAAAATTCCACTCAAGCCTTCTAAGAAATCTTTAAAACGAAGGCAAGACTCGA
C
Found at i:8747025 original size:131 final size:134
Alignment explanation
Indices: 8746670--8747055 Score: 350
Period size: 132 Copynumber: 2.9 Consensus size: 134
8746660 AGATCCGATA
* ** * * * * * *
8746670 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCACGTTTGCTCAAAATAAT
1 TTTGACAATTCGTAGAATCATGCCCTAACGTGCTGGGTTGCAATCTCTCATTTGCTCAAAACAAT
* * * * * * *** *
8746735 CGAATATCCCTTCAAAATTTCACTCAAGCCTTTTAAG--AACTCTTTAAAACGAAGGCAAGGTTT
66 CGAATATCCCTTCAAAATTACACTCATGTCTTCTAAGAAAACACTTTAAAACGAAGGTAATACTC
***
8746798 GACA
131 GGTG
* * * * * **
8746802 TTTGGCAATTCGTAGAATCGTGCCCTAACGTGCTGGGTTGCAATTTCTCGTTTGCTTAAAATGAT
1 TTTGACAATTCGTAGAATCATGCCCTAACGTGCTGGGTTGCAATCTCTCATTTGCTCAAAACAAT
* * * *
8746867 CGAATATCCCTTCAAAATTCCATTCATGTCTTCTAA-AAATCA-TTTAAAATGAAGGTAATACTC
66 CGAATATCCCTTCAAAATTACACTCATGTCTTCTAAGAAAACACTTTAAAACGAAGGTAATACTC
8746930 GGTG
131 GGTG
* * **
8746934 TTTGACAATTCG-GGAATCATGCCCTATCGTGCTGGGTTGTGATCTCTCATTTGCTCAAAACAAT
1 TTTGACAATTCGTAGAATCATGCCCTAACGTGCTGGGTTGCAATCTCTCATTTGCTCAAAACAAT
* * *** *
8746998 CGAATATTCCTTTAGGTTTACACTCATGTCTTTTAAGAAAACACTTTAAAACGAAGGT
66 CGAATATCCCTTCAAAATTACACTCATGTCTTCTAAGAAAACACTTTAAAACGAAGGT
8747056 GATGTTCAAT
Statistics
Matches: 207, Mismatches: 43, Indels: 7
0.81 0.17 0.03
Matches are distributed among these distances:
131 70 0.34
132 122 0.59
133 15 0.07
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (134 bp):
TTTGACAATTCGTAGAATCATGCCCTAACGTGCTGGGTTGCAATCTCTCATTTGCTCAAAACAAT
CGAATATCCCTTCAAAATTACACTCATGTCTTCTAAGAAAACACTTTAAAACGAAGGTAATACTC
GGTG
Found at i:8748089 original size:23 final size:24
Alignment explanation
Indices: 8748056--8748101 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
8748046 TTATTATTAA
8748056 AAAAAATTAATAATCA-ATAATTTT
1 AAAAAATTAATAAT-ATATAATTTT
8748080 AAAAAA-TAATAATATATAATTT
1 AAAAAATTAATAATATATAATTT
8748102 AATAATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 1 0.05
23 14 0.67
24 6 0.29
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (24 bp):
AAAAAATTAATAATATATAATTTT
Found at i:8748150 original size:32 final size:32
Alignment explanation
Indices: 8748114--8748218 Score: 108
Period size: 36 Copynumber: 3.2 Consensus size: 32
8748104 TAATATTTTT
*
8748114 AATATAATTATTTTTATATTATATTATATTAAA
1 AATATAATTATTTTTATATTAAATTATATT-AA
8748147 ATATGATTAAGTTATTTTT-TATTAAATTATATTTTAA
1 A-AT-A-TAA-TTATTTTTATATTAAATTATA--TTAA
*
8748184 AAT-TAAATA-TTTTATATTAAATTATATTAA
1 AATATAATTATTTTTATATTAAATTATATTAA
8748214 AATAT
1 AATAT
8748219 TTCAAATATT
Statistics
Matches: 62, Mismatches: 2, Indels: 18
0.76 0.02 0.22
Matches are distributed among these distances:
30 7 0.11
31 5 0.08
32 14 0.23
33 4 0.06
34 2 0.03
35 1 0.02
36 16 0.26
37 11 0.18
38 2 0.03
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (32 bp):
AATATAATTATTTTTATATTAAATTATATTAA
Found at i:8748176 original size:15 final size:15
Alignment explanation
Indices: 8748152--8748208 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
8748142 TTAAAATATG
*
8748152 ATTAAGTTATTTTTT
1 ATTAAATTATTTTTT
*
8748167 ATTAAATTATATTTTAAA
1 ATTAAATTAT-TTTT--T
*
8748185 ATTAAA-TATTTTAT
1 ATTAAATTATTTTTT
8748199 ATTAAATTAT
1 ATTAAATTAT
8748209 ATTAAAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
14 6 0.18
15 12 0.35
16 7 0.21
17 3 0.09
18 6 0.18
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (15 bp):
ATTAAATTATTTTTT
Found at i:8748204 original size:14 final size:15
Alignment explanation
Indices: 8748175--8748216 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
8748165 TTATTAAATT
8748175 ATATTTTAAAATTAA
1 ATATTTTAAAATTAA
*
8748190 ATATTTT-ATATTAA
1 ATATTTTAAAATTAA
*
8748204 ATTATATTAAAAT
1 A-TATTTTAAAAT
8748217 ATTTCAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 7 0.32
15 12 0.55
16 3 0.14
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATTTTAAAATTAA
Found at i:8751239 original size:52 final size:46
Alignment explanation
Indices: 8751220--8751677 Score: 462
Period size: 46 Copynumber: 10.3 Consensus size: 46
8751210 TGACAAGTGG
* *
8751220 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
8751266 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* *
8751312 AAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* ** *
8751364 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
*
8751410 AAAGTG---A-T-A-AG--T--GCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* ** *
8751446 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
*
8751492 AAAGTG---A-T-A-AG--T--GCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* * *
8751528 AAAGTGATAAGTGTTAGCCTT-AGCTACACTTATCTGATCAAGTGAG
1 AAAGTGATAAGTGATAG-CTTCGGCTACACTTATCTGATCAAGTGAC
* *
8751574 AAAGTGATAAGTGGTAGCCTT-AGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAG-CTTCGGCTACACTTATCTGATCAAGTGAC
* * * *
8751620 AAAGTGATAAGTGGTAGCCT-AGCTACACTTATCTGATC-AGGGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
8751664 -AAGTGATAAGTGAT
1 AAAGTGATAAGTGAT
8751678 CATACGTAAG
Statistics
Matches: 359, Mismatches: 27, Indels: 55
0.81 0.06 0.12
Matches are distributed among these distances:
36 56 0.16
38 2 0.01
39 2 0.01
40 6 0.02
42 6 0.02
43 15 0.04
44 6 0.02
45 21 0.06
46 201 0.56
52 44 0.12
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
Found at i:8751274 original size:98 final size:98
Alignment explanation
Indices: 8751154--8751422 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
8751144 TTTGAGTACT
8751154 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
8751219 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* **
8751252 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
8751317 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
8751350 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTG-ACAAGT
*
8751415 GATAAGTG
65 GAAAAGTG
8751423 CTACACTTAT
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 147 0.92
99 12 0.08
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.29
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:8751427 original size:36 final size:36
Alignment explanation
Indices: 8751386--8751540 Score: 184
Period size: 36 Copynumber: 4.0 Consensus size: 36
8751376 GGTAGCTTTA
8751386 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
8751422 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGAT-A-----AG---T
8751467 AGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
8751504 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
8751540 G
1 G
8751541 TTAGCCTTAG
Statistics
Matches: 103, Mismatches: 6, Indels: 20
0.80 0.05 0.16
Matches are distributed among these distances:
36 65 0.63
37 2 0.02
40 2 0.02
42 2 0.02
45 2 0.02
46 30 0.29
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:8751482 original size:82 final size:82
Alignment explanation
Indices: 8751340--8751675 Score: 471
Period size: 82 Copynumber: 4.0 Consensus size: 82
8751330 GATAGCTTCG
*
8751340 GCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAA
8751405 GTGAAAAAGTGATAAGT
66 GTGAAAAAGTGATAAGT
8751422 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAA
8751487 GTGAAAAAGTGATAAGT
66 GTGAAAAAGTGATAAGT
* * * *
8751504 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTATCTGATCAA
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAA
*
8751569 GTGAGAAAGTGATAAGTGGTAGCCTT
66 GTGAAAAAGTGAT-A-----AG---T
* *
8751595 AGCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTGATC-
1 -GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCA
* *
8751658 AG-GGACAAGTGATAAGT
65 AGTGAAAAAGTGATAAGT
8751675 G
1 G
8751676 ATCATACGTA
Statistics
Matches: 232, Mismatches: 12, Indels: 23
0.87 0.04 0.09
Matches are distributed among these distances:
79 1 0.00
80 1 0.00
82 154 0.66
83 3 0.01
88 3 0.01
89 8 0.03
90 2 0.01
91 20 0.09
92 40 0.17
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (82 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAA
GTGAAAAAGTGATAAGT
Found at i:8751554 original size:128 final size:125
Alignment explanation
Indices: 8751242--8751632 Score: 445
Period size: 128 Copynumber: 3.0 Consensus size: 125
8751232 AATAGCTTCG
8751242 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA
1 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTG-TAGCTT--GCTACACTTATCTGATCAA
* ** * *
8751307 GTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTGAT
63 GTGAC------AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGAT
8751372 AAGTGGT
122 AA---GT
*
8751379 AGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGAT-A----AG--TGCTACACTTATCTGA
1 -GC--TA--T--ACTTATCTGATCAAGTGACAAAGTGATAAGTGTAGCTTGCTACACTTATCTGA
* *
8751437 TCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAA
59 TCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAA
8751502 GT
124 GT
8751504 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTATCTGATCAA
1 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTG-TAG-CTT-GCTACACTTATCTGATCAA
* *
8751569 GTGAGAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
63 GTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
8751632 G
1 G
8751633 GTAGCCTAGC
Statistics
Matches: 224, Mismatches: 13, Indels: 42
0.80 0.05 0.15
Matches are distributed among these distances:
118 26 0.12
119 1 0.00
120 1 0.00
122 2 0.01
124 4 0.02
125 2 0.01
127 1 0.00
128 129 0.58
134 23 0.10
136 1 0.00
138 4 0.02
140 2 0.01
142 1 0.00
143 1 0.00
144 26 0.12
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (125 bp):
GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGTAGCTTGCTACACTTATCTGATCAAGTG
ACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
Found at i:8751668 original size:128 final size:125
Alignment explanation
Indices: 8751154--8751675 Score: 436
Period size: 128 Copynumber: 3.9 Consensus size: 125
8751144 TTTGAGTACT
*
8751154 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGA-AAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAC-----
** * * *
8751219 GAAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGATAGC
60 -AAAGTGATAAGTGGTAGCTT-AGCTACACTTATCTGATCAAGGGA-AAAGTG---A-T-A-AG-
8751284 TTCGGCTACACTTA
115 -T--GCTACACTTA
* * * *
8751298 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAG-CTTCGGCTATACTTATCTGATCAAGAG
1 TCTG----A-T--CAAGTGAAAAGTGATAAGTGGTAGCCTT-AGCTACACTTATCTGATCAAGTG
*
8751362 ACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTAC
58 ACAAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAAG-GGAAAAGTGATAAGTGCTAC
8751427 ACTTA
121 ACTTA
* * *
8751432 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGTGA-AAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
*
8751497 GATAA---GT-GC-TA--T--ACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCT
65 GATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGGGA-AAAGTGAT-A-----AG---T-GCT
8751553 ACACTTA
119 ACACTTA
8751560 TCTGATCAAGTGAGAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGA-AAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGT
* *
8751625 GATAAGTGGTAGCCTAGCTACACTTATCTGATC-AGGGACAAGTGATAAGTG
65 GATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGGGAAAAGTGATAAGTG
8751676 ATCATACGTA
Statistics
Matches: 320, Mismatches: 26, Indels: 83
0.75 0.06 0.19
Matches are distributed among these distances:
117 1 0.00
118 23 0.07
119 1 0.00
120 1 0.00
122 2 0.01
124 4 0.01
125 3 0.01
126 1 0.00
127 7 0.02
128 123 0.38
129 5 0.02
130 1 0.00
131 2 0.01
132 2 0.01
133 2 0.01
134 15 0.05
135 8 0.03
136 5 0.02
137 12 0.04
138 2 0.01
139 1 0.00
140 1 0.00
141 1 0.00
144 45 0.14
145 3 0.01
148 1 0.00
149 3 0.01
150 38 0.12
151 7 0.02
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (125 bp):
TCTGATCAAGTGAAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGACAAAGTG
ATAAGTGGTAGCTTAGCTACACTTATCTGATCAAGGGAAAAGTGATAAGTGCTACACTTA
Found at i:8753213 original size:19 final size:19
Alignment explanation
Indices: 8753191--8753245 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
8753181 AAGTACGGAA
8753191 AAAATTCAAAATAATTT-TT
1 AAAATTCAAAAT-ATTTATT
8753210 AAAATTCAAAATATTTATT
1 AAAATTCAAAATATTTATT
*
8753229 AAAATTCTAAA-ATTTAT
1 AAAATTCAAAATATTTAT
8753246 ATTTTAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
18 10 0.29
19 24 0.71
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATTCAAAATATTTATT
Found at i:8756857 original size:28 final size:25
Alignment explanation
Indices: 8756816--8756867 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 25
8756806 GTCAATAAAT
8756816 AATTTAAAAATTATAAAAAAGTTCAA
1 AATTTAAAAATTAT-AAAAAGTTCAA
8756842 AATTTATAATAATTATAAAAAGTTCA
1 AATTTA-AA-AATTATAAAAAGTTCA
8756868 TAAAAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 6 0.25
27 12 0.50
28 6 0.25
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (25 bp):
AATTTAAAAATTATAAAAAGTTCAA
Found at i:8760879 original size:125 final size:126
Alignment explanation
Indices: 8760658--8761222 Score: 714
Period size: 125 Copynumber: 4.5 Consensus size: 126
8760648 ATAAAATCAA
* * * * * * * * * * *
8760658 AGCAGGATGATTTATCAGAAGGATTTTTGCAGTCGCGCCCACGAGTACGCGCTTTTGCTATAGTA
1 AGCAGGATGCTATATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTA
*
8760723 GGTCCTGGAA-AAATAATTACGAGTTGACGTTTCTGAGCAAATAGTATAAAAAATGCTT-T
66 GGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAATGCTTCT
* * * * *
8760782 AAGCAAGATGCTATATGCGAAGAATTTGTGAAATCGCGCCCTCCTAGACGCACTTTTGCTAC-GT
1 -AGCAGGATGCTATATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
* *
8760846 TGGTCCTAGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAA-GCTTCT
65 AGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAATGCTTCT
* * *
8760907 ACCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTA
1 AGCAGGATGCTATATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTA
* * * * *
8760972 GGT-CTTGAAAAAATTATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTCA
66 GGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAATGCTTCT
* * * *
8761032 AGCAGGATGCTATTTGAGAAGAATTTCTAAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTT
1 AGCAGGATGCTATATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTA
* *
8761097 GGTCCTGGAAGAAATAATTTTGAGTTAACGTTTCTGAGCAAATAGTAT--AAAATCGCTTCT
66 GGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAAT-GCTTCT
* * * *
8761157 A-CTAGGATGCTTTATGAAAAGAATTTGTGAAATCGCGCCCACGTGAACGCGCTTTTGCTACAGT
1 AGC-AGGATGCTATATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGT
8761221 AG
65 AG
8761223 CATGTTTGAG
Statistics
Matches: 379, Mismatches: 54, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
124 120 0.32
125 220 0.58
126 39 0.10
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (126 bp):
AGCAGGATGCTATATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTA
GGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAATGCTTCT
Found at i:8761201 original size:250 final size:249
Alignment explanation
Indices: 8760690--8761222 Score: 832
Period size: 249 Copynumber: 2.1 Consensus size: 249
8760680 ATTTTTGCAG
* * * *
8760690 TCGCGCCCACGAGTACGCGCTTTTGCTATAGTAGGTCCTGGAAAAATAATTACGAGTTGACGTTT
1 TCGCGCCCACGTGAACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTACGAGTTGACGTTT
* * * * *
8760755 CTGAGCAAATAGTATAAAAAATGCTTTAAGCAAGATGCTATATGCGAAGAATTTGTGAAATCGCG
66 CTGAGCAAATAGTATAAAAAACGCTTCAAGCAAGATGCTATATGAGAAGAATTTCTAAAATCGCG
*
8760820 CCCTCCTAGACGCACTTTTGCTACGTTGGTCCTAGAAGAAATAATTTCGAGTTGACGTTTCTGAG
131 CCCTCCTAGACGCACTTTTGCTACGTTGGTCCTAGAAGAAATAATTTCGAGTTAACGTTTCTGAG
*
8760885 CAAATAGTATAAAAAAGCTTCTACCAGGATGCTTTATGAGAAGAATTTGTGAAA
196 CAAATAGTATAAAAAAGCTTCTACCAGGATGCTTTATGAAAAGAATTTGTGAAA
* * * *
8760939 TCGCGCCCACGTGGACGCGCTTTTGCTACAGTAGGTCTTGAAAAAATTATTTCGAGTTGACGTTT
1 TCGCGCCCACGTGAACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTACGAGTTGACGTTT
* *
8761004 CTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTATTTGAGAAGAATTTCTAAAATCGCG
66 CTGAGCAAATAGTATAAAAAACGCTTCAAGCAAGATGCTATATGAGAAGAATTTCTAAAATCGCG
* * * * *
8761069 CCCTCGTGGACGCGCTTTTGCTACAGTTGGTCCTGGAAGAAATAATTTTGAGTTAACGTTTCTGA
131 CCCTCCTAGACGCACTTTTGCTAC-GTTGGTCCTAGAAGAAATAATTTCGAGTTAACGTTTCTGA
** *
8761134 GCAAATAGTATAAAATCGCTTCTACTAGGATGCTTTATGAAAAGAATTTGTGAAA
195 GCAAATAGTATAAAAAAGCTTCTACCAGGATGCTTTATGAAAAGAATTTGTGAAA
8761189 TCGCGCCCACGTGAACGCGCTTTTGCTACAGTAG
1 TCGCGCCCACGTGAACGCGCTTTTGCTACAGTAG
8761223 CATGTTTGAG
Statistics
Matches: 258, Mismatches: 25, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
249 137 0.53
250 121 0.47
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (249 bp):
TCGCGCCCACGTGAACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTACGAGTTGACGTTT
CTGAGCAAATAGTATAAAAAACGCTTCAAGCAAGATGCTATATGAGAAGAATTTCTAAAATCGCG
CCCTCCTAGACGCACTTTTGCTACGTTGGTCCTAGAAGAAATAATTTCGAGTTAACGTTTCTGAG
CAAATAGTATAAAAAAGCTTCTACCAGGATGCTTTATGAAAAGAATTTGTGAAA
Found at i:8764427 original size:22 final size:22
Alignment explanation
Indices: 8764402--8765125 Score: 210
Period size: 22 Copynumber: 33.1 Consensus size: 22
8764392 AATTTAAGAT
*
8764402 TTTAGGGTTTAGGGGTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
* * *
8764424 TTTAAGGTTTAAGGTTTTTAGG
1 TTTAGGGTTTAGGGTTTTTAAG
*
8764446 TTTAGGGTTT-GTGGTTTTTAAA
1 TTTAGGGTTTAG-GGTTTTTAAG
* * *
8764468 TTTAAGGTTTATAGTTTTTTAAG
1 TTTAGGGTTTA-GGGTTTTTAAG
* *
8764491 TTTATGGTTTATGGTTTTTTAAG
1 TTTAGGGTTTA-GGGTTTTTAAG
* *
8764514 TTAAGGG-TTAGGTTTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
* *
8764535 GTTAGGGTTTAGGTTTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
** *
8764557 TTTAAAGTTTAGGGTTTTTAGG
1 TTTAGGGTTTAGGGTTTTTAAG
**
8764579 TTTAGGGTTT-GTATTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
* ** *
8764600 TTAAGGG-TTAGAATTAGGGTTAAGG
1 TTTAGGGTTTAGGGTT---TTTAA-G
** * *
8764625 TTTTAAAG-TTA-AGTCTTTAAGG
1 -TTTAGGGTTTAGGGTTTTTAA-G
* * *
8764647 TTTGGGGTTTTTA-AG-TTTAAAG
1 TTTAGGG--TTTAGGGTTTTTAAG
*
8764669 TTTATGGGGTTTAGGTTTAGGGTTTAGAG
1 TTTA--GGGTTTAGGGTT----TTTA-AG
* *** *
8764698 TTTATGGTTTAAATTTTTTAGG
1 TTTAGGGTTTAGGGTTTTTAAG
*
8764720 TTTAAGGTTTAGGGTTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
* *
8764742 TTAATAGTTAGGGTTTAGGATTTTTAGG
1 ----T--TTAGGGTTTAGGGTTTTTAAG
*
8764770 TTTAAGGTTTAGGGTTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
** * * *
8764792 TTTAAAGTTTAAGATTTTTAGG
1 TTTAGGGTTTAGGGTTTTTAAG
*
8764814 TTTAGGGTTT-GGTTTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
* **
8764835 TTAAGGG-TTAGCATTTTTAA-
1 TTTAGGGTTTAGGGTTTTTAAG
* *
8764855 TTTAAGGG-TTAGTG-TTTCAAG
1 TTT-AGGGTTTAGGGTTTTTAAG
* *
8764876 TTAAGGG-TTA-GG--ATTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
* * **
8764894 GTTAGTGTTTTAAAG---TTAAGG
1 TTTAG-GGTTTAGGGTTTTTAA-G
*
8764915 TTTTAGGGTTTTA-AG--TTTAGAG
1 -TTTAGGG-TTTAGGGTTTTTA-AG
*
8764937 TTT---G-TT---GTTTTTAAT
1 TTTAGGGTTTAGGGTTTTTAAG
* *
8764952 TTAAGGG-TTAGGG-TTTTAGG
1 TTTAGGGTTTAGGGTTTTTAAG
* * *
8764972 GTTAGTGTTT-GGTGGTTTTAAG
1 TTTAGGGTTTAGG-GTTTTTAAG
* *
8764994 TTTAGTGTTTATGGTTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
* *
8765016 TTTAAGGTTT-GTTGTTTTTAAG
1 TTTAGGGTTTAG-GGTTTTTAAG
* *
8765038 TTTAGGGTTTATGGTTTTTAGG
1 TTTAGGGTTTAGGGTTTTTAAG
**
8765060 TTTAAAGTTTAGGGTTTTTAAG
1 TTTAGGGTTTAGGGTTTTTAAG
* *
8765082 TTAAGGG-TTA--GTATTTTAAA
1 TTTAGGGTTTAGGGT-TTTTAAG
8765102 TTTAAGGG-TTAGGGTTTTTAAG
1 TTT-AGGGTTTAGGGTTTTTAAG
8765124 TT
1 TT
8765126 AAAGGTTAGG
Statistics
Matches: 529, Mismatches: 116, Indels: 114
0.70 0.15 0.15
Matches are distributed among these distances:
14 1 0.00
15 3 0.01
16 6 0.01
18 11 0.02
19 4 0.01
20 44 0.08
21 92 0.17
22 261 0.49
23 46 0.09
24 14 0.03
25 3 0.01
26 8 0.02
27 9 0.02
28 21 0.04
29 6 0.01
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (22 bp):
TTTAGGGTTTAGGGTTTTTAAG
Found at i:8764495 original size:16 final size:17
Alignment explanation
Indices: 8764468--8764500 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8764458 GGTTTTTAAA
8764468 TTTAAGGTTTATAGTTT
1 TTTAAGGTTTATAGTTT
*
8764485 TTTAA-GTTTATGGTTT
1 TTTAAGGTTTATAGTTT
8764501 ATGGTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.61
Consensus pattern (17 bp):
TTTAAGGTTTATAGTTT
Found at i:8764660 original size:24 final size:24
Alignment explanation
Indices: 8764633--8764680 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
8764623 GGTTTTAAAG
*
8764633 TTAAGTCTTTAAGGTT-TGGGGTTT
1 TTAAGT-TTAAAGGTTATGGGGTTT
*
8764657 TTAAGTTTAAAGTTTATGGGGTTT
1 TTAAGTTTAAAGGTTATGGGGTTT
8764681 AGGTTTAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.21, C:0.02, G:0.27, T:0.50
Consensus pattern (24 bp):
TTAAGTTTAAAGGTTATGGGGTTT
Found at i:8764706 original size:14 final size:14
Alignment explanation
Indices: 8764661--8764708 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
8764651 GGGTTTTTAA
*
8764661 GTTTAAAGTTTATGGG
1 GTTTAGAGTTTAT--G
*
8764677 GTTTAG-GTTTAGG
1 GTTTAGAGTTTATG
8764690 GTTTAGAGTTTATG
1 GTTTAGAGTTTATG
8764704 GTTTA
1 GTTTA
8764709 AATTTTTTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 7 0.25
14 11 0.39
15 5 0.18
16 5 0.18
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (14 bp):
GTTTAGAGTTTATG
Found at i:8764881 original size:20 final size:20
Alignment explanation
Indices: 8764827--8764886 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 20
8764817 AGGGTTTGGT
*
8764827 TTTTTAAGTTAAGGGTTAGCA
1 TTTTCAAGTTAAGGGTTAG-A
* *
8764848 TTTTTAATTTAAGGGTTAG-
1 TTTTCAAGTTAAGGGTTAGA
8764867 TGTTTCAAGTTAAGGGTTAG
1 T-TTTCAAGTTAAGGGTTAG
8764887 GATTAAGGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
19 1 0.03
20 16 0.46
21 18 0.51
ACGTcount: A:0.27, C:0.03, G:0.25, T:0.45
Consensus pattern (20 bp):
TTTTCAAGTTAAGGGTTAGA
Found at i:8765047 original size:29 final size:29
Alignment explanation
Indices: 8765015--8765076 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
8765005 TGGTTTTTAA
* *
8765015 GTTTAAGGTTTGTT-GTTTTTAAGTTTAGG
1 GTTTAAGGTTT-TTAGGTTTAAAGTTTAGG
*
8765044 GTTTATGGTTTTTAGGTTTAAAGTTTAGG
1 GTTTAAGGTTTTTAGGTTTAAAGTTTAGG
8765073 GTTT
1 GTTT
8765077 TTAAGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.18, C:0.00, G:0.27, T:0.55
Consensus pattern (29 bp):
GTTTAAGGTTTTTAGGTTTAAAGTTTAGG
Found at i:8765133 original size:21 final size:21
Alignment explanation
Indices: 8765006--8765135 Score: 107
Period size: 21 Copynumber: 6.0 Consensus size: 21
8764996 TAGTGTTTAT
* *
8765006 GGTTTTTAAGTTTAAGGTTTG
1 GGTTTTTAAGTTAAAGGTTAG
* * * *
8765027 TTGTTTTTAAGTTTAGGGTTTAT
1 -GGTTTTTAAGTTAAAGG-TTAG
* *
8765050 GGTTTTTAGGTTTAAAGTTTAG
1 GGTTTTTAAG-TTAAAGGTTAG
*
8765072 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAAGGTTAG
** * * *
8765093 TATTTTAAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAAGGTTAG
8765114 GGTTTTTAAGTTAAAGGTTAG
1 GGTTTTTAAGTTAAAGGTTAG
8765135 G
1 G
8765136 ATTAGAGTTA
Statistics
Matches: 84, Mismatches: 22, Indels: 5
0.76 0.20 0.05
Matches are distributed among these distances:
21 43 0.51
22 35 0.42
23 6 0.07
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (21 bp):
GGTTTTTAAGTTAAAGGTTAG
Found at i:8765274 original size:15 final size:15
Alignment explanation
Indices: 8765233--8765281 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
8765223 TAAGGGTTAG
*
8765233 GGTTTTAAAG-TTAA
1 GGTTTTTAAGTTTAA
**
8765247 GGTTTTTGGGTTTAA
1 GGTTTTTAAGTTTAA
*
8765262 GGTTTTTAAGTTTAG
1 GGTTTTTAAGTTTAA
8765277 GGTTT
1 GGTTT
8765282 AATGTTTTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
14 7 0.25
15 21 0.75
ACGTcount: A:0.20, C:0.00, G:0.29, T:0.51
Consensus pattern (15 bp):
GGTTTTTAAGTTTAA
Found at i:8765279 original size:22 final size:22
Alignment explanation
Indices: 8765254--8765867 Score: 190
Period size: 22 Copynumber: 28.2 Consensus size: 22
8765244 TAAGGTTTTT
8765254 GGGTTTAAGGTTTTTAAGTTTA
1 GGGTTTAAGGTTTTTAAGTTTA
*
8765276 GGGTTTAATGTTTTTAAGTTTA
1 GGGTTTAAGGTTTTTAAGTTTA
* * *
8765298 AGGTTTATGGTTTTAAAGTTTA
1 GGGTTTAAGGTTTTTAAGTTTA
*
8765320 GGGTTTATA-GTTTTTAGGTTTA
1 GGGTTTA-AGGTTTTTAAGTTTA
** * *
8765342 GCATTT-AGGGTTTTAAGTTAA
1 GGGTTTAAGGTTTTTAAGTTTA
* *
8765363 GAG-TT-AGTGTTTTTAGGTTTA
1 GGGTTTAAG-GTTTTTAAGTTTA
*
8765384 AGGTTT--GTGTTTTTAAGTTTA
1 GGGTTTAAG-GTTTTTAAGTTTA
* *
8765405 GGGTTTATGGTTTTAAAGTTTA
1 GGGTTTAAGGTTTTTAAGTTTA
* *
8765427 GGG-TTAGGGTTTTTAAGTTAA
1 GGGTTTAAGGTTTTTAAGTTTA
** * *
8765448 GGG-TT-A-G-AATTATGGTTA
1 GGGTTTAAGGTTTTTAAGTTTA
* *
8765466 GGGTTTTAAAG--TTAAAGTTTTA
1 GGG-TTTAAGGTTTTTAAG-TTTA
8765488 GGGTTT-AGGATTTTCTAAGTTTA
1 GGGTTTAAGG-TTTT-TAAGTTTA
* * *
8765511 GAGTTTAGGGTTTTTAGGTTTA
1 GGGTTTAAGGTTTTTAAGTTTA
** *** *
8765533 TGCTTTTTAA-G-TTTGGGGTTTG
1 -G-GGTTTAAGGTTTTTAAGTTTA
**
8765555 GGGTTTGGGGTTTTTAAGTTTA
1 GGGTTTAAGGTTTTTAAGTTTA
* * *
8765577 GGGTTTATGGTTTCTAGGTTTA
1 GGGTTTAAGGTTTTTAAGTTTA
* ** **
8765599 TGG-TTAAAATTTTTAAGTGAA
1 GGGTTTAAGGTTTTTAAGTTTA
** * **
8765620 GGG-TT-A-G-AATTAGGGCTA
1 GGGTTTAAGGTTTTTAAGTTTA
* *
8765638 GTGTTTTAAAG---TTAAGGTTTTA
1 G-GGTTTAAGGTTTTTAA-G-TTTA
**
8765660 GGGTTTGGGGTTTTTTAA-TTTA
1 GGGTTTAAGG-TTTTTAAGTTTA
*
8765682 GGGTTTAAGGTTTTTAGGTTTA
1 GGGTTTAAGGTTTTTAAGTTTA
**
8765704 GGGTTTAAGGTTTAAGATTTATAAGTTA
1 GGGTTTAAGG-TT----TTTA-AGTTTA
** * * *
8765732 ATGGTTAGGGTTTTTTAGGTTTA
1 GGGTTTAAGG-TTTTTAAGTTTA
8765755 GGGTTT-AGAGTTTTTAAGTTTA
1 GGGTTTAAG-GTTTTTAAGTTTA
* ** *
8765777 AGGTTTGGGGTTTTTAATTTTA
1 GGGTTTAAGGTTTTTAAGTTTA
* * *
8765799 AGGTTTAGGGTTTTTAGGTTTA
1 GGGTTTAAGGTTTTTAAGTTTA
* *
8765821 GTGTTT--GGTTTTTTAAGTTAA
1 GGGTTTAAGG-TTTTTAAGTTTA
**
8765842 GGG-TTATCGTTTTTAA-TTTAA
1 GGGTTTAAGGTTTTTAAGTTT-A
8765863 GGGTT
1 GGGTT
8765868 AGTGTTTTAA
Statistics
Matches: 433, Mismatches: 115, Indels: 88
0.68 0.18 0.14
Matches are distributed among these distances:
18 15 0.03
19 2 0.00
20 24 0.06
21 121 0.28
22 210 0.48
23 28 0.06
24 13 0.03
25 4 0.01
27 4 0.01
28 12 0.03
ACGTcount: A:0.22, C:0.01, G:0.28, T:0.49
Consensus pattern (22 bp):
GGGTTTAAGGTTTTTAAGTTTA
Found at i:8765450 original size:21 final size:21
Alignment explanation
Indices: 8765262--8765454 Score: 154
Period size: 21 Copynumber: 9.0 Consensus size: 21
8765252 TTGGGTTTAA
*
8765262 GGTTTTTAAGTTTAGGGTTTAA
1 GGTTTTTAAGTTTAGGG-TTAG
* * *
8765284 TGTTTTTAAGTTTAAGGTTTAT
1 GGTTTTTAAGTTT-AGGGTTAG
* *
8765306 GGTTTTAAAGTTTAGGGTTTAT
1 GGTTTTTAAGTTTAGGG-TTAG
* * **
8765328 AGTTTTTAGGTTTAGCATTTAG
1 GGTTTTTAAGTTTAG-GGTTAG
* *
8765350 GG-TTTTAAGTTAAGAGTTAG
1 GGTTTTTAAGTTTAGGGTTAG
* * * *
8765370 TGTTTTTAGGTTTAAGGTTTG
1 GGTTTTTAAGTTTAGGGTTAG
* *
8765391 TGTTTTTAAGTTTAGGGTTTAT
1 GGTTTTTAAGTTTAGGG-TTAG
*
8765413 GGTTTTAAAGTTTAGGGTTAG
1 GGTTTTTAAGTTTAGGGTTAG
*
8765434 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTTAGGGTTAG
8765455 AATTATGGTT
Statistics
Matches: 135, Mismatches: 31, Indels: 11
0.76 0.18 0.06
Matches are distributed among these distances:
20 6 0.04
21 63 0.47
22 63 0.47
23 3 0.02
ACGTcount: A:0.22, C:0.01, G:0.27, T:0.50
Consensus pattern (21 bp):
GGTTTTTAAGTTTAGGGTTAG
Found at i:8765516 original size:23 final size:22
Alignment explanation
Indices: 8765484--8765532 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
8765474 AAGTTAAAGT
*
8765484 TTTAGGGTTTAGGATTTTCTAAG
1 TTTAGAGTTTAGGATTTT-TAAG
* *
8765507 TTTAGAGTTTAGGGTTTTTAGG
1 TTTAGAGTTTAGGATTTTTAAG
8765529 TTTA
1 TTTA
8765533 TGCTTTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.20, C:0.02, G:0.27, T:0.51
Consensus pattern (22 bp):
TTTAGAGTTTAGGATTTTTAAG
Found at i:8765555 original size:7 final size:7
Alignment explanation
Indices: 8765543--8765567 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8765533 TGCTTTTTAA
8765543 GTTTGGG
1 GTTTGGG
8765550 GTTTGGG
1 GTTTGGG
8765557 GTTTGGG
1 GTTTGGG
8765564 GTTT
1 GTTT
8765568 TTAAGTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (7 bp):
GTTTGGG
Found at i:8765570 original size:172 final size:171
Alignment explanation
Indices: 8765392--8765703 Score: 464
Period size: 172 Copynumber: 1.8 Consensus size: 171
8765382 TAAGGTTTGT
*** *
8765392 GTTTTTAAGTTTAGGGTTTATGGTTT-TAAAGTTTAGGGTTAGGGTTTTTAAGTTAAGGGTTAGA
1 GTTTTTAAGTTTAGGGTTTATGGTTTCT-AAGTTTAGGGTTAAAATTTTTAAGTGAAGGGTTAGA
* * *
8765456 ATTATGGTTAGGGTTTTAAAGTTAAAGTTTTAGGGTTTAGGATTTTCTAAGTTTAGAGTTTAGGG
65 ATTAGGGCTAGGGTTTTAAAGTTAAAGTTTTAGGGTTTAGGATTTTCTAA-TTTAGAGTTTAAGG
8765521 TTTTTAGGTTTATGCTTTTTAAGTTTGGGGTTTGGGGTTTGGG
129 TTTTTAGGTTTATGCTTTTTAAGTTTGGGGTTTGGGGTTTGGG
* *
8765564 GTTTTTAAGTTTAGGGTTTATGGTTTCTAGGTTTATGGTTAAAATTTTTAAGTGAAGGGTTAGAA
1 GTTTTTAAGTTTAGGGTTTATGGTTTCTAAGTTTAGGGTTAAAATTTTTAAGTGAAGGGTTAGAA
* * * * * *
8765629 TTAGGGCTAGTGTTTTAAAGTTAAGGTTTTAGGGTTTGGGGTTTTTTAATTTAGGGTTTAAGGTT
66 TTAGGGCTAGGGTTTTAAAGTTAAAGTTTTAGGGTTTAGGATTTTCTAATTTAGAGTTTAAGGTT
8765694 TTTAGGTTTA
131 TTTAGGTTTA
8765704 GGGTTTAAGG
Statistics
Matches: 124, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
171 24 0.19
172 99 0.80
173 1 0.01
ACGTcount: A:0.22, C:0.01, G:0.29, T:0.48
Consensus pattern (171 bp):
GTTTTTAAGTTTAGGGTTTATGGTTTCTAAGTTTAGGGTTAAAATTTTTAAGTGAAGGGTTAGAA
TTAGGGCTAGGGTTTTAAAGTTAAAGTTTTAGGGTTTAGGATTTTCTAATTTAGAGTTTAAGGTT
TTTAGGTTTATGCTTTTTAAGTTTGGGGTTTGGGGTTTGGG
Found at i:8765580 original size:15 final size:15
Alignment explanation
Indices: 8765507--8765582 Score: 64
Period size: 15 Copynumber: 5.1 Consensus size: 15
8765497 ATTTTCTAAG
8765507 TTTAGAGTTTAGGGTT
1 TTTA-AGTTTAGGGTT
* * *
8765523 TTTAGGTTTATGCTT
1 TTTAAGTTTAGGGTT
*
8765538 TTTAAGTTT-GGGGT
1 TTTAAGTTTAGGGTT
*** *
8765552 TTGGGGTTTGGGGTT
1 TTTAAGTTTAGGGTT
8765567 TTTAAGTTTAGGGTT
1 TTTAAGTTTAGGGTT
8765582 T
1 T
8765583 ATGGTTTCTA
Statistics
Matches: 44, Mismatches: 15, Indels: 3
0.71 0.24 0.05
Matches are distributed among these distances:
14 8 0.18
15 32 0.73
16 4 0.09
ACGTcount: A:0.13, C:0.01, G:0.33, T:0.53
Consensus pattern (15 bp):
TTTAAGTTTAGGGTT
Found at i:8765588 original size:29 final size:29
Alignment explanation
Indices: 8765507--8765589 Score: 85
Period size: 29 Copynumber: 2.8 Consensus size: 29
8765497 ATTTTCTAAG
* *
8765507 TTTAGAGTTTAGGGTTTTTAGGTTTATGCTT
1 TTTA-AGTTTAGGGTTTAT-GGTTTAGGCTT
* ** * *
8765538 TTTAAGTTTGGGGTTTGGGGTTTGGGGTT
1 TTTAAGTTTAGGGTTTATGGTTTAGGCTT
8765567 TTTAAGTTTAGGGTTTATGGTTT
1 TTTAAGTTTAGGGTTTATGGTTT
8765590 CTAGGTTTAT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
29 28 0.65
30 11 0.26
31 4 0.09
ACGTcount: A:0.13, C:0.01, G:0.33, T:0.53
Consensus pattern (29 bp):
TTTAAGTTTAGGGTTTATGGTTTAGGCTT
Found at i:8765701 original size:15 final size:15
Alignment explanation
Indices: 8765678--8765719 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
8765668 GGTTTTTTAA
*
8765678 TTTAGGGTTTAAGGTT
1 TTTA-GGTTTAAGGGT
8765694 TTTAGGTTT-AGGGT
1 TTTAGGTTTAAGGGT
*
8765708 TTAAGGTTTAAG
1 TTTAGGTTTAAG
8765720 ATTTATAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 12 0.52
15 7 0.30
16 4 0.17
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (15 bp):
TTTAGGTTTAAGGGT
Found at i:8765737 original size:29 final size:29
Alignment explanation
Indices: 8765678--8765737 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 29
8765668 GGTTTTTTAA
* * * * *
8765678 TTTAGGGTTTAAGGTTTTTAGGTTTAGGG
1 TTTAAGGTTTAAGATTTATAAGTTAAGGG
*
8765707 TTTAAGGTTTAAGATTTATAAGTTAATGG
1 TTTAAGGTTTAAGATTTATAAGTTAAGGG
8765736 TT
1 TT
8765738 AGGGTTTTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (29 bp):
TTTAAGGTTTAAGATTTATAAGTTAAGGG
Found at i:8765877 original size:20 final size:22
Alignment explanation
Indices: 8765830--8765889 Score: 81
Period size: 21 Copynumber: 2.9 Consensus size: 22
8765820 AGTGTTTGGT
8765830 TTTTTAAGTTAAGGGTTA-TCG
1 TTTTTAAGTTAAGGGTTAGTCG
*
8765851 TTTTTAATTTAAGGGTTAGT-G
1 TTTTTAAGTTAAGGGTTAGTCG
*
8765872 -TTTTAAGTTAAGTGTTAG
1 TTTTTAAGTTAAGGGTTAG
8765890 AATTGGGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
20 16 0.46
21 18 0.51
22 1 0.03
ACGTcount: A:0.25, C:0.02, G:0.23, T:0.50
Consensus pattern (22 bp):
TTTTTAAGTTAAGGGTTAGTCG
Found at i:8766018 original size:21 final size:21
Alignment explanation
Indices: 8765915--8766018 Score: 54
Period size: 21 Copynumber: 5.0 Consensus size: 21
8765905 TTTAAAGTTA
*
8765915 AGGTTTTAGGTTTTAGGGCTTTT
1 AGGTTTAAGG-TTTAGGG-TTTT
* * ***
8765938 AAGTTTAGGGTTTACTATTTT
1 AGGTTTAAGGTTTAGGGTTTT
*
8765959 AGGTTTAGGGTTT-GTGG-TTT
1 AGGTTTAAGGTTTAG-GGTTTT
* * *
8765979 AAG-TTAAGAG-CTAGTGTTTT
1 AGGTTTAAG-GTTTAGGGTTTT
8765999 AGGTTTAAGGTTTAGGGTTT
1 AGGTTTAAGGTTTAGGGTTT
8766019 GTGGTTTGGT
Statistics
Matches: 58, Mismatches: 17, Indels: 14
0.65 0.19 0.16
Matches are distributed among these distances:
19 6 0.10
20 13 0.22
21 28 0.48
22 4 0.07
23 7 0.12
ACGTcount: A:0.19, C:0.03, G:0.30, T:0.48
Consensus pattern (21 bp):
AGGTTTAAGGTTTAGGGTTTT
Found at i:8766078 original size:21 final size:21
Alignment explanation
Indices: 8766039--8766128 Score: 108
Period size: 21 Copynumber: 4.2 Consensus size: 21
8766029 GTTTTTAGGT
* * *
8766039 TTAGGATTTTTAGGTTTAAGGT
1 TTAGGGTTTTTAAG-TTAAGGG
*
8766061 TTGGGGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
* *
8766082 TTAGCGTTTTTAATTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
*
8766103 TTAGTGTTTTTAAGTTAAGGG
1 TTAGGGTTTTTAAGTTAAGGG
8766124 TTAGG
1 TTAGG
8766129 ATTAGGGTTA
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
21 47 0.81
22 11 0.19
ACGTcount: A:0.22, C:0.01, G:0.30, T:0.47
Consensus pattern (21 bp):
TTAGGGTTTTTAAGTTAAGGG
Found at i:8766429 original size:21 final size:21
Alignment explanation
Indices: 8766405--8766452 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
8766395 ATTTGTCCAG
*
8766405 CTTCCGGCG-GCGGTTGTGGTT
1 CTTCCGGCGAG-GATTGTGGTT
*
8766426 CTTCCGGCGAGGATTTTGGTT
1 CTTCCGGCGAGGATTGTGGTT
8766447 CTTCCG
1 CTTCCG
8766453 ATAGGGCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.04, C:0.25, G:0.35, T:0.35
Consensus pattern (21 bp):
CTTCCGGCGAGGATTGTGGTT
Found at i:8771343 original size:3 final size:3
Alignment explanation
Indices: 8771318--8771399 Score: 57
Period size: 3 Copynumber: 27.3 Consensus size: 3
8771308 ATTTTTGAGC
*
8771318 TAT T-T TAT TATT TATT TATT TAT TAT TA- TAT TA- TAT CAT TAT GTAT
1 TAT TAT TAT TA-T TA-T TA-T TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* *
8771364 TAT TA- TAT TATT TAT TAT TAT TGT CAT TAT T-T TAT T
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT T
8771400 TGTACATACG
Statistics
Matches: 65, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
2 10 0.15
3 38 0.58
4 17 0.26
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8771344 original size:23 final size:23
Alignment explanation
Indices: 8771318--8771379 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
8771308 ATTTTTGAGC
*
8771318 TATTTTATTATTTATTTATTTAT
1 TATTATATTATTTATTTATTTAT
* *
8771341 TATTATATTATATCA-TTATGTAT
1 TATTATATTAT-TTATTTATTTAT
8771364 TATTATATTATTTATT
1 TATTATATTATTTATT
8771380 ATTATTGTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 2 0.06
23 29 0.88
24 2 0.06
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (23 bp):
TATTATATTATTTATTTATTTAT
Found at i:8771380 original size:15 final size:15
Alignment explanation
Indices: 8771318--8771384 Score: 75
Period size: 15 Copynumber: 4.4 Consensus size: 15
8771308 ATTTTTGAGC
*
8771318 TATTTTATTATTTATT
1 TATTATATTATTTA-T
8771334 TATT-TATTATTATAT
1 TATTATATTATT-TAT
*
8771349 TA-TATCATTATGTAT
1 TATTAT-ATTATTTAT
8771364 TATTATATTATTTAT
1 TATTATATTATTTAT
8771379 TATTAT
1 TATTAT
8771385 TGTCATTATT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
14 1 0.02
15 30 0.67
16 14 0.31
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (15 bp):
TATTATATTATTTAT
Found at i:8774852 original size:20 final size:20
Alignment explanation
Indices: 8774827--8774866 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8774817 TTCATCTCAT
8774827 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
*
8774847 GCATCGCATTATATGCATTA
1 GCATCGCATCATATGCATTA
8774867 AAGACCTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.33
Consensus pattern (20 bp):
GCATCGCATCATATGCATTA
Found at i:8783961 original size:100 final size:100
Alignment explanation
Indices: 8782848--8783935 Score: 2059
Period size: 100 Copynumber: 10.9 Consensus size: 100
8782838 GGTTGAAAAG
** *
8782848 TAAAAAGATTGAAGCCACAACGGCAGATCTTACTTCCTTAGCAATGCAGCGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
* *
8782913 TACGACGGTGGATCTGGTTTCCCTGATATTGCAAT
66 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
8782948 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
8783013 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
66 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
8783048 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
8783113 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
66 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
8783148 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
8783213 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
66 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
8783248 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
8783313 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
66 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
8783348 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
8783413 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
66 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
8783448 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
8783513 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
66 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
8783548 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
8783613 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
66 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
8783648 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
8783713 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
66 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
8783748 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
* * *
8783813 TACGACAGCGGATCTAGTTTCCCTGATATTGCAAT
66 AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
* * * *
8783848 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAACAGTGCAGCGAAACAGATTAAAGC
1 TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
*
8783913 TACGACGGCGGATCTGGTTTCCC
66 AACGACGGCGGATCTGGTTTCCC
8783936 CGACATTGTA
Statistics
Matches: 974, Mismatches: 14, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 974 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (100 bp):
TAAAAAGATTGAAGCCACAACGGTGGATCTTACTTCCTTAGCAGTGCAGCGGAACAGATTGAAGC
AACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
Found at i:8786064 original size:37 final size:37
Alignment explanation
Indices: 8786023--8786171 Score: 253
Period size: 37 Copynumber: 4.0 Consensus size: 37
8786013 GCTGAAGCTA
*
8786023 CCACTTATCACTTTATCACTTGATCAGATAAGTGTAG
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
* *
8786060 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAA
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
**
8786097 CCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAG
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
8786134 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
8786171 C
1 C
8786172 TAAAACTACC
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (37 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG
Found at i:8792664 original size:45 final size:46
Alignment explanation
Indices: 8792597--8792720 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
8792587 CATATGACCT
*
8792597 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
8792640 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
*
8792686 CTTATCACTTTATCACTTGATCAGATAAGTGTAGC
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGC
8792721 CACTTATCAC
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 8 0.11
44 4 0.05
45 21 0.28
46 41 0.55
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
Found at i:8792703 original size:46 final size:45
Alignment explanation
Indices: 8792597--8792903 Score: 212
Period size: 37 Copynumber: 7.7 Consensus size: 45
8792587 CATATGACCT
*
8792597 CTTATCAC-TTGTC-CTTGATCAGATAAGTGTAGCTAGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
8792640 CTTATCACTTTGCCACTTGATCAGATAAGTGTAGCTGAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCTACCA
*
8792686 CTTATCACTTTATCACTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
8792723 CTTATCACTTTGTCTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
8792760 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
8792797 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-A---ACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
**
8792834 CTTATCACTTTGTTTCTTGATCAGATAA--GT-G-T-AG---CCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
*
8792871 CTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTA
8792904 ACCACTTATC
Statistics
Matches: 248, Mismatches: 8, Indels: 19
0.90 0.03 0.07
Matches are distributed among these distances:
37 173 0.70
39 2 0.01
40 2 0.01
42 1 0.00
43 9 0.04
44 6 0.02
45 21 0.08
46 34 0.14
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (45 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCTACCA
Found at i:8792724 original size:37 final size:37
Alignment explanation
Indices: 8792682--8792932 Score: 439
Period size: 37 Copynumber: 6.8 Consensus size: 37
8792672 AGCTGAAGCT
* **
8792682 ACCACTTATCACTTTATCACTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* *
8792719 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
8792756 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
8792793 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
8792830 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
* *
8792867 GCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTA
1 ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
8792904 ACCACTTATCACTTTGTTTCTTGATCAGA
1 ACCACTTATCACTTTGTTTCTTGATCAGA
8792933 AGTACTCAAA
Statistics
Matches: 205, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 205 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.39
Consensus pattern (37 bp):
ACCACTTATCACTTTGTTTCTTGATCAGATAAGTGTA
Found at i:8796710 original size:13 final size:14
Alignment explanation
Indices: 8796692--8796722 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
8796682 ATGTACGAAT
8796692 ATATACATATA-TA
1 ATATACATATATTA
8796705 ATATACATATATTA
1 ATATACATATATTA
8796719 ATAT
1 ATAT
8796723 TATTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATACATATATTA
Found at i:8796813 original size:3 final size:3
Alignment explanation
Indices: 8796784--8796861 Score: 60
Period size: 3 Copynumber: 26.7 Consensus size: 3
8796774 ATTAATATGT
* *
8796784 TAA TAA -AA TAA CAA TAA TGAA -AA TAA TAA TAA CT-G TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA -TAA TAA TAA TAA
8796828 -AGA TAA TAA TAGA -AA TAA -AA TAA TAA TAA TAA TA
1 TA-A TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TA
8796862 TTGATAATAT
Statistics
Matches: 61, Mismatches: 4, Indels: 20
0.72 0.05 0.24
Matches are distributed among these distances:
2 9 0.15
3 47 0.77
4 5 0.08
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:8798198 original size:352 final size:352
Alignment explanation
Indices: 8797554--8798258 Score: 1410
Period size: 352 Copynumber: 2.0 Consensus size: 352
8797544 CAATGATATT
8797554 GCTCTCTTCTTGGTATTTTGAAATTGCTTTTATAAAATGATTGTTGAAGTTTGGTTAGGATTACC
1 GCTCTCTTCTTGGTATTTTGAAATTGCTTTTATAAAATGATTGTTGAAGTTTGGTTAGGATTACC
8797619 AAATGCTTTCTTTTCTCTGATTTTTGGAATTGCCAAAAGGGGAACCCTTTTTCTGTTTTTACAAT
66 AAATGCTTTCTTTTCTCTGATTTTTGGAATTGCCAAAAGGGGAACCCTTTTTCTGTTTTTACAAT
8797684 CGGCTTTATAGCCTGTTTTCTTTTACAATCTATTTTTTTTTTAAATTTGCTGTTAGCGTGCTTCC
131 CGGCTTTATAGCCTGTTTTCTTTTACAATCTATTTTTTTTTTAAATTTGCTGTTAGCGTGCTTCC
8797749 TTTCATCTTGCAGGGGATGTGCACGGTGGAGCAGGTGGCCAGTGCTGGTGTCAGAAGGTTGGTGC
196 TTTCATCTTGCAGGGGATGTGCACGGTGGAGCAGGTGGCCAGTGCTGGTGTCAGAAGGTTGGTGC
8797814 GGTGCTGGTCAGATGGCAGGGGGTTGGTGCGCAAGTGGGGTTCGGCGCAAGTGGGCAAGTGGGGG
261 GGTGCTGGTCAGATGGCAGGGGGTTGGTGCGCAAGTGGGGTTCGGCGCAAGTGGGCAAGTGGGGG
8797879 GTAGGTGGCTAGGGTTAGTGGGATTAG
326 GTAGGTGGCTAGGGTTAGTGGGATTAG
8797906 GCTCTCTTCTTGGTATTTTGAAATTGCTTTTATAAAATGATTGTTGAAGTTTGGTTAGGATTACC
1 GCTCTCTTCTTGGTATTTTGAAATTGCTTTTATAAAATGATTGTTGAAGTTTGGTTAGGATTACC
8797971 AAATGCTTTCTTTTCTCTGATTTTTGGAATTGCCAAAAGGGGAACCCTTTTTCTGTTTTTACAAT
66 AAATGCTTTCTTTTCTCTGATTTTTGGAATTGCCAAAAGGGGAACCCTTTTTCTGTTTTTACAAT
8798036 CGGCTTTATAGCCTGTTTTCTTTTACAATCTATTTTTTTTTTAAATTTGCTGTTAGCGTGCTTCC
131 CGGCTTTATAGCCTGTTTTCTTTTACAATCTATTTTTTTTTTAAATTTGCTGTTAGCGTGCTTCC
8798101 TTTCATCTTGCAGGGGATGTGCACGGTGGAGCAGGTGGCCAGTGCTGGTGTCAGAAGGTTGGTGC
196 TTTCATCTTGCAGGGGATGTGCACGGTGGAGCAGGTGGCCAGTGCTGGTGTCAGAAGGTTGGTGC
8798166 GGTGCTGGTCAGATGGCAGGGGGTTGGTGCGCAAGTGGGGTTCGGCGCAAGTGGGCAAGTGGGGG
261 GGTGCTGGTCAGATGGCAGGGGGTTGGTGCGCAAGTGGGGTTCGGCGCAAGTGGGCAAGTGGGGG
8798231 GTAGGTGGCTAGGGTTAGTGGGATTAG
326 GTAGGTGGCTAGGGTTAGTGGGATTAG
8798258 G
1 G
8798259 GTTTCTGAAT
Statistics
Matches: 353, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
352 353 1.00
ACGTcount: A:0.18, C:0.14, G:0.30, T:0.37
Consensus pattern (352 bp):
GCTCTCTTCTTGGTATTTTGAAATTGCTTTTATAAAATGATTGTTGAAGTTTGGTTAGGATTACC
AAATGCTTTCTTTTCTCTGATTTTTGGAATTGCCAAAAGGGGAACCCTTTTTCTGTTTTTACAAT
CGGCTTTATAGCCTGTTTTCTTTTACAATCTATTTTTTTTTTAAATTTGCTGTTAGCGTGCTTCC
TTTCATCTTGCAGGGGATGTGCACGGTGGAGCAGGTGGCCAGTGCTGGTGTCAGAAGGTTGGTGC
GGTGCTGGTCAGATGGCAGGGGGTTGGTGCGCAAGTGGGGTTCGGCGCAAGTGGGCAAGTGGGGG
GTAGGTGGCTAGGGTTAGTGGGATTAG
Found at i:8805008 original size:14 final size:14
Alignment explanation
Indices: 8804991--8805021 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
8804981 ACTATTTGTC
8804991 AATAATTACTATAA
1 AATAATTACTATAA
8805005 AATAATTACTATAA
1 AATAATTACTATAA
8805019 AAT
1 AAT
8805022 TTAAAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (14 bp):
AATAATTACTATAA
Found at i:8805205 original size:12 final size:12
Alignment explanation
Indices: 8805188--8805214 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8805178 ATTCCGGACA
8805188 AATATATTTAAT
1 AATATATTTAAT
8805200 AATATATTTAAT
1 AATATATTTAAT
8805212 AAT
1 AAT
8805215 TCCTTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
AATATATTTAAT
Found at i:8806027 original size:20 final size:20
Alignment explanation
Indices: 8806004--8806041 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8805994 TTTAAATGTA
*
8806004 AAAAATCATATAAAAATTTT
1 AAAAATCATAAAAAAATTTT
*
8806024 AAAAATTATAAAAAAATT
1 AAAAATCATAAAAAAATT
8806042 AGAAAACTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAAATCATAAAAAAATTTT
Found at i:8806047 original size:20 final size:20
Alignment explanation
Indices: 8806004--8806053 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
8805994 TTTAAATGTA
* * **
8806004 AAAAATCATATAAAAATTTT
1 AAAAATTATAAAAAAATTAG
8806024 AAAAATTATAAAAAAATTAG
1 AAAAATTATAAAAAAATTAG
*
8806044 AAAACTTATA
1 AAAAATTATA
8806054 TATATATATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (20 bp):
AAAAATTATAAAAAAATTAG
Found at i:8810566 original size:3 final size:3
Alignment explanation
Indices: 8810558--8810583 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8810548 TCTTCCCTCT
8810558 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
8810584 ATCCTCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:8815503 original size:31 final size:30
Alignment explanation
Indices: 8815462--8815554 Score: 93
Period size: 31 Copynumber: 3.1 Consensus size: 30
8815452 AAAAAAATTA
*
8815462 AAATACCAAATTAAGAAAAAATGTCAAGTTC
1 AAATATCAAATTAAGAAAAAATG-CAAGTTC
* *
8815493 AAATATCAAATT-AGACAAAAAAG-AA-TTT
1 AAATATCAAATTAAGA-AAAAATGCAAGTTC
*
8815521 AAATATCAAATTAAAAAAAAAATGGCAAGTTC
1 AAATATCAAATT-AAGAAAAAAT-GCAAGTTC
8815553 AA
1 AA
8815555 GCACCAAATG
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
28 14 0.28
29 7 0.14
30 6 0.12
31 19 0.38
32 4 0.08
ACGTcount: A:0.59, C:0.10, G:0.09, T:0.23
Consensus pattern (30 bp):
AAATATCAAATTAAGAAAAAATGCAAGTTC
Found at i:8815563 original size:60 final size:59
Alignment explanation
Indices: 8815407--8815555 Score: 185
Period size: 58 Copynumber: 2.5 Consensus size: 59
8815397 AAAGATTAGG
* * * * *
8815407 TACCAAATTAGAAAAAAGA-GTCAAGTTCAAGTGTCAAATTGGACTAAAAAAATTAAAA
1 TACCAAATTAAAAAAAAAATGTCAAGTTCAAGTATCAAATTAGACAAAAAAAATTAAAA
* * *
8815465 TACCAAATT-AAGAAAAAATGTCAAGTTCAAATATCAAATTAGACAAAAAAGAATTTAAA
1 TACCAAATTAAAAAAAAAATGTCAAGTTCAAGTATCAAATTAGACAAAAAA-AATTAAAA
* *
8815524 TATCAAATTAAAAAAAAAATGGCAAGTTCAAG
1 TACCAAATTAAAAAAAAAATGTCAAGTTCAAG
8815556 CACCAAATGT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
57 6 0.08
58 36 0.47
59 15 0.20
60 19 0.25
ACGTcount: A:0.56, C:0.10, G:0.11, T:0.23
Consensus pattern (59 bp):
TACCAAATTAAAAAAAAAATGTCAAGTTCAAGTATCAAATTAGACAAAAAAAATTAAAA
Found at i:8816075 original size:22 final size:22
Alignment explanation
Indices: 8816034--8816075 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
8816024 ACTTGGATTA
*
8816034 TTATTTAATTATTAATATTATT
1 TTATTTAATTATTAACATTATT
8816056 TTATTTAATT-TTAAACATTA
1 TTATTTAATTATT-AACATTA
8816076 ACATAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
TTATTTAATTATTAACATTATT
Found at i:8820966 original size:21 final size:21
Alignment explanation
Indices: 8820940--8820980 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8820930 AGACGAGCAA
* *
8820940 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
8820961 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
8820981 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:8832294 original size:31 final size:31
Alignment explanation
Indices: 8832213--8832294 Score: 103
Period size: 31 Copynumber: 2.6 Consensus size: 31
8832203 AATTAAAGGA
8832213 TTAATATATC-ATTTGGTACCTATATTTGGTT
1 TTAATAT-TCAATTTGGTACCTATATTTGGTT
* ** *
8832244 TTAATATTCAAATCAGTACCTATGTTTGGTT
1 TTAATATTCAATTTGGTACCTATATTTGGTT
*
8832275 TTAGTATTCAATTTGGTACC
1 TTAATATTCAATTTGGTACC
8832295 CAAACTAAAC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 2 0.05
31 40 0.95
ACGTcount: A:0.27, C:0.12, G:0.13, T:0.48
Consensus pattern (31 bp):
TTAATATTCAATTTGGTACCTATATTTGGTT
Found at i:8833886 original size:17 final size:18
Alignment explanation
Indices: 8833854--8833892 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
8833844 AGGAAACAAT
*
8833854 TAATAGTACCATTAAAAA
1 TAATAGTACAATTAAAAA
8833872 TAATAGTA-AATTAAAAA
1 TAATAGTACAATTAAAAA
8833889 -AATA
1 TAATA
8833893 TTATTCTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 8 0.40
18 8 0.40
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (18 bp):
TAATAGTACAATTAAAAA
Found at i:8835789 original size:2 final size:2
Alignment explanation
Indices: 8835782--8835807 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8835772 TGTGTAAGAA
8835782 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8835808 GATTATTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8842779 original size:21 final size:21
Alignment explanation
Indices: 8842755--8842795 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8842745 TCAAATTTTT
*
8842755 TATATTTTAATTAAAGTAAAC
1 TATAATTTAATTAAAGTAAAC
*
8842776 TATAATTTAATTAAATTAAA
1 TATAATTTAATTAAAGTAAA
8842796 TTTTATAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
TATAATTTAATTAAAGTAAAC
Found at i:8842807 original size:21 final size:21
Alignment explanation
Indices: 8842783--8842831 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
8842773 AACTATAATT
8842783 TAATTAAAT-TAAATTTTATAG
1 TAATTAAATGT-AATTTTATAG
* * *
8842804 TAATTCAATGTAATTTTTTTG
1 TAATTAAATGTAATTTTATAG
8842825 TAATTAA
1 TAATTAA
8842832 TATTTCATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (21 bp):
TAATTAAATGTAATTTTATAG
Found at i:8850254 original size:69 final size:69
Alignment explanation
Indices: 8850143--8850279 Score: 222
Period size: 69 Copynumber: 2.0 Consensus size: 69
8850133 TTTCTATCCA
* * *
8850143 GTTATCACGTTCAAGCTCTCATATGAGAATAGTTGTCTAATTTAAGCCCCAATGTGAAGACATTT
1 GTTATCAAGTTCAAGCTCTCATATAAAAATAGTTGTCTAATTTAAGCCCCAATGTGAAGACATTT
8850208 GTAG
66 GTAG
*
8850212 GTTATCAAGTTCAAGCTCTTATATAAAAATAAG-TGTCTAATTTAAGCCCCAATGTGAAGACATT
1 GTTATCAAGTTCAAGCTCTCATATAAAAAT-AGTTGTCTAATTTAAGCCCCAATGTGAAGACATT
8850276 TGTA
65 TGTA
8850280 AGGATTAACT
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
69 61 0.97
70 2 0.03
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34
Consensus pattern (69 bp):
GTTATCAAGTTCAAGCTCTCATATAAAAATAGTTGTCTAATTTAAGCCCCAATGTGAAGACATTT
GTAG
Found at i:8855406 original size:3 final size:3
Alignment explanation
Indices: 8855398--8855422 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
8855388 AAGTTATGGT
8855398 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
8855423 CCATTAGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8856099 original size:32 final size:32
Alignment explanation
Indices: 8856053--8856162 Score: 118
Period size: 31 Copynumber: 3.4 Consensus size: 32
8856043 GATGTCCTTT
*
8856053 AAAATATTTGAAAATTTTAATTAG-GTCCCTTCA
1 AAAAT-TTTAAAAATTTTAATTAGAG-CCCTTCA
* *
8856086 AAAATTTTAAAAATTCTAA-TAGAGCCTTTCA
1 AAAATTTTAAAAATTTTAATTAGAGCCCTTCA
* *
8856117 AAAATTTTAAAAATTTTAATTA-AACCCTCCAA
1 AAAATTTTAAAAATTTTAATTAGAGCCCTTC-A
*
8856149 AAAATTTGAAAAAT
1 AAAATTTTAAAAAT
8856163 CTTATTAATC
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
31 32 0.48
32 29 0.44
33 5 0.08
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.35
Consensus pattern (32 bp):
AAAATTTTAAAAATTTTAATTAGAGCCCTTCA
Found at i:8856150 original size:31 final size:31
Alignment explanation
Indices: 8856053--8856237 Score: 108
Period size: 31 Copynumber: 5.9 Consensus size: 31
8856043 GATGTCCTTT
* ** *
8856053 AAAATATTTGAAAATTTTAATTAGGTCCCTTCA
1 AAAAT-TTTAAAAATTTTAATTA-AACCCTCCA
* * * *
8856086 AAAATTTTAAAAATTCTAA-TAGAGCCTTTCA
1 AAAATTTTAAAAATTTTAATTA-AACCCTCCA
8856117 AAAATTTTAAAAATTTTAATTAAACCCTCCAA
1 AAAATTTTAAAAATTTTAATTAAACCCTCC-A
* * * * *
8856149 AAAATTTGAAAAATCTT-ATTAATCTTCTCGA
1 AAAATTTTAAAAATTTTAATTAAAC-CCTCCA
**
8856180 AATCTTTT-AAAATTTTAATTAAACCC-CCTA
1 AAAATTTTAAAAATTTTAATTAAACCCTCC-A
** * * *
8856210 AAGTTTTTGAAAATATTAAGTAAACCCT
1 AAAATTTTAAAAATTTTAATTAAACCCT
8856238 TCTAAGATTT
Statistics
Matches: 120, Mismatches: 25, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
29 1 0.01
30 15 0.12
31 66 0.55
32 33 0.28
33 5 0.04
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.37
Consensus pattern (31 bp):
AAAATTTTAAAAATTTTAATTAAACCCTCCA
Found at i:8872567 original size:18 final size:18
Alignment explanation
Indices: 8872536--8872570 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8872526 TCTATTATTA
*
8872536 AGTGGGGAATGTGCAATG
1 AGTGGGGAAGGTGCAATG
*
8872554 AGTGGTGAAGGTGCAAT
1 AGTGGGGAAGGTGCAAT
8872571 AGCTGGGGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.43, T:0.23
Consensus pattern (18 bp):
AGTGGGGAAGGTGCAATG
Found at i:8883696 original size:29 final size:30
Alignment explanation
Indices: 8883643--8883702 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
8883633 TCCGAGCATT
*
8883643 GGGGCAAAAATGTAATTATGTAAAAATTTA
1 GGGGCAAAAATGTAATTATGTAAAAAGTTA
*
8883673 GGGGC-AAAATCGTAATTTTG-AAAAAGTTA
1 GGGGCAAAAAT-GTAATTATGTAAAAAGTTA
8883702 G
1 G
8883703 AGTCGAGGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 14 0.52
30 13 0.48
ACGTcount: A:0.43, C:0.05, G:0.23, T:0.28
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGTAAAAAGTTA
Found at i:8884115 original size:50 final size:50
Alignment explanation
Indices: 8884040--8884223 Score: 264
Period size: 50 Copynumber: 3.7 Consensus size: 50
8884030 TTGGGTAAAC
*
8884040 AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAT
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAT
*
8884090 AGGTCGCC-TGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAG
1 AGGTC-CCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAT
* *
8884140 AGGTTCCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATGAGT
1 AGG-TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGA-T
** *
8884191 ACATCCCATGTAAGACCATGTCTAGGACATGGC
1 AGGTCCCATGTAAGACCATGTCTGGGACATGGC
8884224 TTTGGCATGT
Statistics
Matches: 121, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
50 93 0.77
51 28 0.23
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (50 bp):
AGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAT
Found at i:8886118 original size:185 final size:186
Alignment explanation
Indices: 8885805--8886140 Score: 602
Period size: 185 Copynumber: 1.8 Consensus size: 186
8885795 TAGCATACTG
*
8885805 GTGGTATTTGATGAGATGTCAATGTGGAACTAAGAGAAGAAAGAACCAGAGGTAGTTTCTGAAGA
1 GTGGTATTTGATGAGATGTCAAGGTGGAACTAAGAGAAGAAAGAACCAGAGGTAGTTTCTGAAGA
*
8885870 CCTTGTAGCAGATCAGACTGAATCTGATCAGAATGGTCCTGAAATGGACATTGATGATGAACCAG
66 CCTTGTAGCAGATCAGACTGAACCTGATCAGAATGGTCCTGAAATGGACATTGATGATGAACCAG
8885935 TCAGGGGCACTAGACCCTTGGATCCTTCAGCAAACAAGGTGCTTGTGAGTAGAGAT
131 TCAGGGGCACTAGACCCTTGGATCCTTCAGCAAACAAGGTGCTTGTGAGTAGAGAT
** * *
8885991 GTGGTATTTGATGAGATGTCAAGGTGGAACTGGGAGAAGAAAGAACCATA-TTAGTTTCTGAAGA
1 GTGGTATTTGATGAGATGTCAAGGTGGAACTAAGAGAAGAAAGAACCAGAGGTAGTTTCTGAAGA
*
8886055 CCTTGTAGCAGATCAGATTGAACCTGATCAGAATGGTCCTGAAATGGACATTGATGATGAACCAG
66 CCTTGTAGCAGATCAGACTGAACCTGATCAGAATGGTCCTGAAATGGACATTGATGATGAACCAG
8886120 TCAGGGGCACTAGACCCTTGG
131 TCAGGGGCACTAGACCCTTGG
8886141 CTGAGATTTA
Statistics
Matches: 143, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
185 97 0.68
186 46 0.32
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.24
Consensus pattern (186 bp):
GTGGTATTTGATGAGATGTCAAGGTGGAACTAAGAGAAGAAAGAACCAGAGGTAGTTTCTGAAGA
CCTTGTAGCAGATCAGACTGAACCTGATCAGAATGGTCCTGAAATGGACATTGATGATGAACCAG
TCAGGGGCACTAGACCCTTGGATCCTTCAGCAAACAAGGTGCTTGTGAGTAGAGAT
Found at i:8907935 original size:21 final size:21
Alignment explanation
Indices: 8907911--8907950 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8907901 TGTATATAAT
*
8907911 TGAATCAAAATTTATGTTTCA
1 TGAATCAAAATTTAAGTTTCA
* *
8907932 TGAATTATAATTTAAGTTT
1 TGAATCAAAATTTAAGTTT
8907951 TAAGTATATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47
Consensus pattern (21 bp):
TGAATCAAAATTTAAGTTTCA
Found at i:8916491 original size:18 final size:18
Alignment explanation
Indices: 8916468--8916504 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
8916458 ATGTTAAATT
*
8916468 ACAAAAATTACAACAACA
1 ACAAAAATCACAACAACA
8916486 ACAAAAATCACAACAACA
1 ACAAAAATCACAACAACA
8916504 A
1 A
8916505 AAATGAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (18 bp):
ACAAAAATCACAACAACA
Found at i:8916498 original size:15 final size:15
Alignment explanation
Indices: 8916480--8916508 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8916470 AAAAATTACA
8916480 ACAACAACAAAAATC
1 ACAACAACAAAAATC
8916495 ACAACAACAAAAAT
1 ACAACAACAAAAAT
8916509 GAAGAACTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.24, G:0.00, T:0.07
Consensus pattern (15 bp):
ACAACAACAAAAATC
Found at i:8920043 original size:31 final size:30
Alignment explanation
Indices: 8920008--8920068 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
8919998 TAAAAGTTCG
*
8920008 AATTAAGCCTTCCAAAAGTTTTAAAAATTTT
1 AATTAAACCTT-CAAAAGTTTTAAAAATTTT
* * *
8920039 AATTAAACCTTCAGAATTTTTTAAAATTTT
1 AATTAAACCTTCAAAAGTTTTAAAAATTTT
8920069 CTCATCAATC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 16 0.62
31 10 0.38
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (30 bp):
AATTAAACCTTCAAAAGTTTTAAAAATTTT
Found at i:8920564 original size:31 final size:31
Alignment explanation
Indices: 8920528--8920586 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
8920518 TTAATTTAAT
* *
8920528 CAATTTTAGTCCCTATACTTTTTGAATTAGC
1 CAATTTTAGTCCCCAGACTTTTTGAATTAGC
8920559 CAATTTTAGTCCCCAGACTTTTTGAATT
1 CAATTTTAGTCCCCAGACTTTTTGAATT
8920587 TTGAAGTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.25, C:0.20, G:0.10, T:0.44
Consensus pattern (31 bp):
CAATTTTAGTCCCCAGACTTTTTGAATTAGC
Found at i:8927964 original size:33 final size:34
Alignment explanation
Indices: 8927924--8927987 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
8927914 GGGCCGGGGA
* *
8927924 AAAAATCATAAG-CCTGGCCCGGCCCGGCCCGAG
1 AAAAATCATAAGCCCGGGCACGGCCCGGCCCGAG
8927957 AAAAATCATAAGCCCGGGCACGGCCCGGCCC
1 AAAAATCATAAGCCCGGGCACGGCCCGGCCC
8927988 ATTTTTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 12 0.43
34 16 0.57
ACGTcount: A:0.28, C:0.38, G:0.27, T:0.08
Consensus pattern (34 bp):
AAAAATCATAAGCCCGGGCACGGCCCGGCCCGAG
Found at i:8928028 original size:21 final size:22
Alignment explanation
Indices: 8927999--8928119 Score: 68
Period size: 21 Copynumber: 5.3 Consensus size: 22
8927989 TTTTTTAAAT
***
8927999 AAATATTAAAATTTTATTTTAA
1 AAATATTAAAAAAGTATTTTAA
8928021 AAAT-TTAAAAAAGTATTTTAA
1 AAATATTAAAAAAGTATTTTAA
** **
8928042 AAATATTTTAAAATAAAAAAATTAAAA
1 AAATA--TT--AA-AAAAGTATTTTAA
*
8928069 AATATATTTTAAAAA-TATTTTAA
1 AA-ATA-TTAAAAAAGTATTTTAA
* *
8928092 AATTA-AAAAAAAGTATTTTAA
1 AAATATTAAAAAAGTATTTTAA
8928113 AAATATT
1 AAATATT
8928120 TTTAAAATTA
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
20 5 0.07
21 30 0.41
22 6 0.08
23 7 0.09
24 6 0.08
25 1 0.01
26 2 0.03
27 14 0.19
28 3 0.04
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
AAATATTAAAAAAGTATTTTAA
Found at i:8928048 original size:11 final size:11
Alignment explanation
Indices: 8928013--8928127 Score: 70
Period size: 11 Copynumber: 11.1 Consensus size: 11
8928003 ATTAAAATTT
8928013 TATTTT-AAAA
1 TATTTTAAAAA
*
8928023 -ATTTAAAAAA
1 TATTTTAAAAA
8928033 GTATTTTAAAAA
1 -TATTTTAAAAA
8928045 TATTTT-AAAA
1 TATTTTAAAAA
8928055 TA----AAAAA
1 TATTTTAAAAA
**
8928062 -ATTAAAAAATA
1 TATTTTAAAA-A
8928073 TATTTTAAAAA
1 TATTTTAAAAA
8928084 TATTTT-AAAA
1 TATTTTAAAAA
***
8928094 T-TAAAAAAAA
1 TATTTTAAAAA
8928104 GTATTTTAAAAA
1 -TATTTTAAAAA
*
8928116 TATTTTTAAAA
1 TATTTTAAAAA
8928127 T
1 T
8928128 TAAAAAATTA
Statistics
Matches: 81, Mismatches: 11, Indels: 25
0.69 0.09 0.21
Matches are distributed among these distances:
6 1 0.01
7 4 0.05
9 5 0.06
10 23 0.28
11 26 0.32
12 22 0.27
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:8928076 original size:71 final size:70
Alignment explanation
Indices: 8928013--8928144 Score: 205
Period size: 71 Copynumber: 1.9 Consensus size: 70
8928003 ATTAAAATTT
*
8928013 TATTTTAAAAATT-TAAAAAAGTATTTTAAAAATA-TTTTAAAATAAAAAAATTAAAAAATATAT
1 TATTTT-AAAATTAAAAAAAAGTATTTTAAAAATATTTTTAAAATAAAAAAATTAAAAAA-ATA-
8928076 TTTAAAAA
63 TTTAAAAA
*
8928084 TATTTTAAAATTAAAAAAAAGTATTTTAAAAATATTTTTAAAATTAAAAAATTAAAAAAAT
1 TATTTTAAAATTAAAAAAAAGTATTTTAAAAATATTTTTAAAATAAAAAAATTAAAAAAAT
8928145 TAAATATATT
Statistics
Matches: 57, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
70 6 0.11
71 28 0.49
72 23 0.40
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (70 bp):
TATTTTAAAATTAAAAAAAAGTATTTTAAAAATATTTTTAAAATAAAAAAATTAAAAAAATATTT
AAAAA
Found at i:8928077 original size:39 final size:39
Alignment explanation
Indices: 8928019--8928102 Score: 134
Period size: 39 Copynumber: 2.2 Consensus size: 39
8928009 ATTTTATTTT
* *
8928019 AAAAATTTAAAAAAGTATTTTAAAAATATTTTAAAA-TA
1 AAAAAATTAAAAAAATATTTTAAAAATATTTTAAAATTA
8928057 AAAAAATTAAAAAATATATTTTAAAAATATTTTAAAATTA
1 AAAAAATTAAAAAA-ATATTTTAAAAATATTTTAAAATTA
8928097 AAAAAA
1 AAAAAA
8928103 AGTATTTTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
38 13 0.31
39 21 0.50
40 8 0.19
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (39 bp):
AAAAAATTAAAAAAATATTTTAAAAATATTTTAAAATTA
Found at i:8928109 original size:32 final size:32
Alignment explanation
Indices: 8928059--8928134 Score: 127
Period size: 33 Copynumber: 2.4 Consensus size: 32
8928049 TTAAAATAAA
*
8928059 AAAATTAAAAAATATATTTTAAAAATA-TTTT
1 AAAATTAAAAAAAATATTTTAAAAATATTTTT
8928090 AAAATTAAAAAAAAGTATTTTAAAAATATTTTT
1 AAAATTAAAAAAAA-TATTTTAAAAATATTTTT
8928123 AAAATTAAAAAA
1 AAAATTAAAAAA
8928135 TTAAAAAAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
31 13 0.31
32 13 0.31
33 16 0.38
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (32 bp):
AAAATTAAAAAAAATATTTTAAAAATATTTTT
Found at i:8929127 original size:38 final size:38
Alignment explanation
Indices: 8929085--8929159 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
8929075 TCATATTATC
* *
8929085 AAAATCAAACGCGATCAATACGAATCAAAATTTTAATT
1 AAAATCAAACGCAATAAATACGAATCAAAATTTTAATT
* *
8929123 AAAATTAAACGCAATAAATACGAATTAAAATTTTAAT
1 AAAATCAAACGCAATAAATACGAATCAAAATTTTAAT
8929160 CGATGCAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.53, C:0.12, G:0.07, T:0.28
Consensus pattern (38 bp):
AAAATCAAACGCAATAAATACGAATCAAAATTTTAATT
Found at i:8939164 original size:30 final size:32
Alignment explanation
Indices: 8939104--8939213 Score: 86
Period size: 31 Copynumber: 3.6 Consensus size: 32
8939094 TTAATATAAT
*
8939104 ATTTGGTATCTGAATTTTGGTTTTAATGTTCA
1 ATTTGGTACCTGAATTTTGGTTTTAATGTTCA
8939136 ATTTGGTACCT-AA-TTT-GTTTTCAATGTTCA
1 ATTTGGTACCTGAATTTTGGTTTT-AATGTTCA
* * ** * * * *
8939166 CTTTAGTATTTG-AGTTTAGCTTTAATGTTTA
1 ATTTGGTACCTGAATTTTGGTTTTAATGTTCA
*
8939197 ATTTGGTACAT-AATTTT
1 ATTTGGTACCTGAATTTT
8939214 TTCTTTATCT
Statistics
Matches: 61, Mismatches: 12, Indels: 11
0.73 0.14 0.13
Matches are distributed among these distances:
29 5 0.08
30 19 0.31
31 23 0.38
32 14 0.23
ACGTcount: A:0.24, C:0.08, G:0.15, T:0.53
Consensus pattern (32 bp):
ATTTGGTACCTGAATTTTGGTTTTAATGTTCA
Found at i:8950750 original size:9 final size:10
Alignment explanation
Indices: 8950721--8950747 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
8950711 TATATATTTA
8950721 TTTTAATTAT
1 TTTTAATTAT
8950731 TTTTAATTAT
1 TTTTAATTAT
8950741 TTTTAAT
1 TTTTAAT
8950748 ATTACCTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTAATTAT
Found at i:8951173 original size:29 final size:31
Alignment explanation
Indices: 8951126--8951185 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
8951116 AAATCGGGCC
*
8951126 AAATCAAAATTTCATGTATA-AAATTACACA
1 AAATCAAAAGTTCATGTATACAAATTACACA
*
8951156 AAATC-AAAGTTCTTGTATACAAATTACACA
1 AAATCAAAAGTTCATGTATACAAATTACACA
8951186 TTAAACTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.50, C:0.15, G:0.05, T:0.30
Consensus pattern (31 bp):
AAATCAAAAGTTCATGTATACAAATTACACA
Done.