Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 41 of 203
Found at i:13498649 original size:16 final size:16
Alignment explanation
Indices: 13498626--13498677 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 16
13498616 TATAAATACG
13498626 AAAAAATTATCAAT-T
1 AAAAAATTATCAATAT
*
13498641 AACAAAATTATAAATACT
1 AA-AAAATTATCAATA-T
13498659 AAAAAATTATCAATGAT
1 AAAAAATTATCAAT-AT
13498676 AA
1 AA
13498678 TAACTTTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
15 2 0.06
16 11 0.35
17 14 0.45
18 4 0.13
ACGTcount: A:0.62, C:0.08, G:0.02, T:0.29
Consensus pattern (16 bp):
AAAAAATTATCAATAT
Found at i:13499652 original size:18 final size:18
Alignment explanation
Indices: 13499629--13499664 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
13499619 AAATTTGGCA
13499629 AGACAATTGGGCCTACCT
1 AGACAATTGGGCCTACCT
13499647 AGACAATTGGGCCTACCT
1 AGACAATTGGGCCTACCT
13499665 TTAAAAGCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (18 bp):
AGACAATTGGGCCTACCT
Found at i:13525801 original size:161 final size:161
Alignment explanation
Indices: 13525617--13525942 Score: 652
Period size: 161 Copynumber: 2.0 Consensus size: 161
13525607 TAAACTAAGC
13525617 TTAAGCATTCTATTAACACACATTACATTTGCTCAAGCTCAATCTAGCTAGATATACAAGTCTAA
1 TTAAGCATTCTATTAACACACATTACATTTGCTCAAGCTCAATCTAGCTAGATATACAAGTCTAA
13525682 AGCTATGCCTAAGCTCCCTGATGTTTGTTAATAACTAACCTAAATCCATTTTAAGCTCGTCCATA
66 AGCTATGCCTAAGCTCCCTGATGTTTGTTAATAACTAACCTAAATCCATTTTAAGCTCGTCCATA
13525747 TTATTTTTAAAATTTAAAAAATATTTATATT
131 TTATTTTTAAAATTTAAAAAATATTTATATT
13525778 TTAAGCATTCTATTAACACACATTACATTTGCTCAAGCTCAATCTAGCTAGATATACAAGTCTAA
1 TTAAGCATTCTATTAACACACATTACATTTGCTCAAGCTCAATCTAGCTAGATATACAAGTCTAA
13525843 AGCTATGCCTAAGCTCCCTGATGTTTGTTAATAACTAACCTAAATCCATTTTAAGCTCGTCCATA
66 AGCTATGCCTAAGCTCCCTGATGTTTGTTAATAACTAACCTAAATCCATTTTAAGCTCGTCCATA
13525908 TTATTTTTAAAATTTAAAAAATATTTATATT
131 TTATTTTTAAAATTTAAAAAATATTTATATT
13525939 TTAA
1 TTAA
13525943 TATAATGTTT
Statistics
Matches: 165, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
161 165 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.37
Consensus pattern (161 bp):
TTAAGCATTCTATTAACACACATTACATTTGCTCAAGCTCAATCTAGCTAGATATACAAGTCTAA
AGCTATGCCTAAGCTCCCTGATGTTTGTTAATAACTAACCTAAATCCATTTTAAGCTCGTCCATA
TTATTTTTAAAATTTAAAAAATATTTATATT
Found at i:13526033 original size:12 final size:12
Alignment explanation
Indices: 13526016--13526053 Score: 76
Period size: 12 Copynumber: 3.2 Consensus size: 12
13526006 ATTTTTTAAT
13526016 GTTTACATTATA
1 GTTTACATTATA
13526028 GTTTACATTATA
1 GTTTACATTATA
13526040 GTTTACATTATA
1 GTTTACATTATA
13526052 GT
1 GT
13526054 ATTATATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.50
Consensus pattern (12 bp):
GTTTACATTATA
Found at i:13532835 original size:18 final size:18
Alignment explanation
Indices: 13532812--13532863 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
13532802 GTTCAAGGTG
13532812 TAATTAATTTAAAATT-TT
1 TAATTAA-TTAAAATTATT
*
13532830 TAATTAATTAAATTTATT
1 TAATTAATTAAAATTATT
*
13532848 TAA-TAA-AAAAATTATT
1 TAATTAATTAAAATTATT
13532864 CTCGTCTCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 8 0.27
17 10 0.33
18 12 0.40
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTAATTAAAATTATT
Found at i:13533024 original size:29 final size:29
Alignment explanation
Indices: 13532986--13533062 Score: 154
Period size: 29 Copynumber: 2.7 Consensus size: 29
13532976 AACGATAACG
13532986 TAAGTGACTAAAATGTAATATTTCAAACA
1 TAAGTGACTAAAATGTAATATTTCAAACA
13533015 TAAGTGACTAAAATGTAATATTTCAAACA
1 TAAGTGACTAAAATGTAATATTTCAAACA
13533044 TAAGTGACTAAAATGTAAT
1 TAAGTGACTAAAATGTAAT
13533063 TTGAGACAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 48 1.00
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.31
Consensus pattern (29 bp):
TAAGTGACTAAAATGTAATATTTCAAACA
Found at i:13534142 original size:7 final size:7
Alignment explanation
Indices: 13534130--13534159 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
13534120 AACATGTAAG
13534130 AGAGGCA
1 AGAGGCA
13534137 AGAGGCA
1 AGAGGCA
13534144 AGAGGCA
1 AGAGGCA
13534151 AGAGGCA
1 AGAGGCA
13534158 AG
1 AG
13534160 TGACAAGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.43, C:0.13, G:0.43, T:0.00
Consensus pattern (7 bp):
AGAGGCA
Found at i:13539734 original size:37 final size:38
Alignment explanation
Indices: 13539693--13539768 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 38
13539683 TGATAACTCA
*
13539693 AAGCAAA-AGAAATCAGAAGATTCATCTGATATCTTAG
1 AAGCAAACAAAAATCAGAAGATTCATCTGATATCTTAG
* * *
13539730 AAGCAAAGCAAAAATTAGAAGATTCTTGTGATATCTTAG
1 AAGCAAA-CAAAAATCAGAAGATTCATCTGATATCTTAG
13539769 GGCCACATAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 7 0.21
39 26 0.79
ACGTcount: A:0.45, C:0.12, G:0.17, T:0.26
Consensus pattern (38 bp):
AAGCAAACAAAAATCAGAAGATTCATCTGATATCTTAG
Found at i:13552339 original size:18 final size:18
Alignment explanation
Indices: 13552316--13552351 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
13552306 AAAGCCTTCG
*
13552316 AAGTATGGTCACCGTATT
1 AAGTATGGCCACCGTATT
*
13552334 AAGTATGGCCACTGTATT
1 AAGTATGGCCACCGTATT
13552352 GGGGTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (18 bp):
AAGTATGGCCACCGTATT
Found at i:13564266 original size:21 final size:21
Alignment explanation
Indices: 13564240--13564280 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
13564230 ATCTGCTCAA
* *
13564240 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
13564261 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
13564281 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:13574999 original size:27 final size:26
Alignment explanation
Indices: 13574967--13575020 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 26
13574957 ACAGTTGAAC
13574967 TTATTTTCTCTATTTT-T-TAATTTGATT
1 TTATTTT-T-TATTTTGTATAATTT-ATT
13574994 TTATTTTTTATTTTGTATAATTTATT
1 TTATTTTTTATTTTGTATAATTTATT
13575020 T
1 T
13575021 GATCAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
25 6 0.24
26 6 0.24
27 13 0.52
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.72
Consensus pattern (26 bp):
TTATTTTTTATTTTGTATAATTTATT
Found at i:13581867 original size:17 final size:18
Alignment explanation
Indices: 13581845--13581878 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
13581835 CGACCGCGAT
13581845 AAACGTGA-CGCGACCGA
1 AAACGTGACCGCGACCGA
13581862 AAACGTGACCGCGACCG
1 AAACGTGACCGCGACCG
13581879 CAATTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.32, C:0.32, G:0.29, T:0.06
Consensus pattern (18 bp):
AAACGTGACCGCGACCGA
Found at i:13586245 original size:31 final size:31
Alignment explanation
Indices: 13586179--13586242 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
13586169 GTGGACTTGT
* **
13586179 AAATTTACAATTTGATCACTCAATTATTAGT
1 AAATTTACAATTTGATCACCCAATTATTAAA
13586210 AAATTTACAATTT-ACTCACCCAATT-TTAAA
1 AAATTTACAATTTGA-TCACCCAATTATTAAA
13586240 AAA
1 AAA
13586243 ATTATTAGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 7 0.24
31 22 0.76
ACGTcount: A:0.44, C:0.16, G:0.03, T:0.38
Consensus pattern (31 bp):
AAATTTACAATTTGATCACCCAATTATTAAA
Found at i:13588273 original size:2 final size:2
Alignment explanation
Indices: 13588268--13588300 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
13588258 TATATATATA
13588268 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
13588301 CAATTTCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:13592932 original size:28 final size:29
Alignment explanation
Indices: 13592900--13592962 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
13592890 TTTAAATTCA
* *
13592900 AAAAATAATAAAGTTAAATTCTTAAA-A-AT
1 AAAAA-AATAAAATAAAATT-TTAAATATAT
13592929 AAAAAAATAAAATAAAATTTTAAATATAT
1 AAAAAAATAAAATAAAATTTTAAATATAT
13592958 AAAAA
1 AAAAA
13592963 GCGTAAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 5 0.17
28 13 0.43
29 12 0.40
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (29 bp):
AAAAAAATAAAATAAAATTTTAAATATAT
Found at i:13592939 original size:22 final size:22
Alignment explanation
Indices: 13592892--13592939 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
13592882 CTTAAAAATT
**
13592892 TAAATTCAAAAAATAATAAAGT
1 TAAATTCAAAAAATAATAAAAA
*
13592914 TAAATTCTTAAAAATAA-AAAAA
1 TAAATTC-AAAAAATAATAAAAA
13592936 TAAA
1 TAAA
13592940 ATAAAATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (22 bp):
TAAATTCAAAAAATAATAAAAA
Found at i:13592952 original size:27 final size:28
Alignment explanation
Indices: 13592900--13592962 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 28
13592890 TTTAAATTCA
* *
13592900 AAAAATAATAAAGTTAAATTCTTAAAAAT
1 AAAAA-AATAAAATAAAATTCTTAAAAAT
*
13592929 AAAAAAATAAAATAAAATT-TTAAATAT
1 AAAAAAATAAAATAAAATTCTTAAAAAT
*
13592956 ATAAAAA
1 AAAAAAA
13592963 GCGTAAAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 13 0.43
28 12 0.40
29 5 0.17
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (28 bp):
AAAAAAATAAAATAAAATTCTTAAAAAT
Found at i:13599448 original size:18 final size:18
Alignment explanation
Indices: 13599425--13599462 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
13599415 TAATGTGTTT
*
13599425 TAAATTGCATAATATATA
1 TAAATTACATAATATATA
13599443 TAAATTACATAATATATA
1 TAAATTACATAATATATA
13599461 TA
1 TA
13599463 CAAATGATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (18 bp):
TAAATTACATAATATATA
Found at i:13599461 original size:20 final size:20
Alignment explanation
Indices: 13599432--13599478 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
13599422 TTTTAAATTG
*
13599432 CATAATATATAT--AAATTA
1 CATAATATATATACAAATGA
13599450 CATAATATATATACAAATGA
1 CATAATATATATACAAATGA
*
13599470 TATAATATA
1 CATAATATA
13599479 AAGTATTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 12 0.48
20 13 0.52
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.36
Consensus pattern (20 bp):
CATAATATATATACAAATGA
Found at i:13603663 original size:64 final size:64
Alignment explanation
Indices: 13603584--13603714 Score: 253
Period size: 64 Copynumber: 2.0 Consensus size: 64
13603574 GAGAAAAATT
13603584 AAAGGAGGTTTGAAAATTGAGATTTATCTTAATATTTATATATAAAAAAATTATCACAATATTG
1 AAAGGAGGTTTGAAAATTGAGATTTATCTTAATATTTATATATAAAAAAATTATCACAATATTG
*
13603648 AAAGGAGGTTTGAAAATTGAGATTTATCTTAATATTTATATATAAAAAATTTATCACAATATTG
1 AAAGGAGGTTTGAAAATTGAGATTTATCTTAATATTTATATATAAAAAAATTATCACAATATTG
13603712 AAA
1 AAA
13603715 TTTTATATAT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.46, C:0.05, G:0.12, T:0.37
Consensus pattern (64 bp):
AAAGGAGGTTTGAAAATTGAGATTTATCTTAATATTTATATATAAAAAAATTATCACAATATTG
Found at i:13604018 original size:16 final size:16
Alignment explanation
Indices: 13603997--13604027 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13603987 ATAAAAAAAA
13603997 TTCCATGAAGACAAAG
1 TTCCATGAAGACAAAG
*
13604013 TTCCATGCAGACAAA
1 TTCCATGAAGACAAA
13604028 AGTAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.19
Consensus pattern (16 bp):
TTCCATGAAGACAAAG
Found at i:13606673 original size:10 final size:11
Alignment explanation
Indices: 13606656--13606684 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
13606646 AAAAATTATG
13606656 ATTTTTTTGAA
1 ATTTTTTTGAA
13606667 ATTTTTTTGAA
1 ATTTTTTTGAA
13606678 ATTTTTT
1 ATTTTTT
13606685 CCTATTTCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (11 bp):
ATTTTTTTGAA
Found at i:13609821 original size:21 final size:22
Alignment explanation
Indices: 13609759--13609822 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 22
13609749 TTATTTTTTA
*
13609759 ATAATAATTAAATAATATTTATG
1 ATAAT-ATTATATAATATTTATG
* *
13609782 ATAATATTAT-TTATCTTTATG
1 ATAATATTATATAATATTTATG
*
13609803 ATAATTTTATATAAT-TTTAT
1 ATAATATTATATAATATTTAT
13609823 TTTCTTACCT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 23 0.66
22 7 0.20
23 5 0.14
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (22 bp):
ATAATATTATATAATATTTATG
Found at i:13610136 original size:19 final size:21
Alignment explanation
Indices: 13610092--13610136 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
13610082 ATTGGTAGGA
*
13610092 AAATTTTTTATTTAAATTCTT
1 AAATTTTTTATTAAAATTCTT
*
13610113 TAATTTTTT-TTAAAATT-TT
1 AAATTTTTTATTAAAATTCTT
13610132 AAATT
1 AAATT
13610137 AATAAAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 6 0.29
20 7 0.33
21 8 0.38
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
AAATTTTTTATTAAAATTCTT
Found at i:13620178 original size:16 final size:16
Alignment explanation
Indices: 13620154--13620193 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
13620144 CATATACATT
13620154 CAAACATACACACAAA
1 CAAACATACACACAAA
* *
13620170 CATACATACACACTAA
1 CAAACATACACACAAA
13620186 CAAACATA
1 CAAACATA
13620194 AAGTATACAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.57, C:0.30, G:0.00, T:0.12
Consensus pattern (16 bp):
CAAACATACACACAAA
Found at i:13628402 original size:33 final size:33
Alignment explanation
Indices: 13628365--13628447 Score: 109
Period size: 32 Copynumber: 2.6 Consensus size: 33
13628355 CTACTTTCAA
* * *
13628365 TTTATCCAATT-TGGTATCTGTATTTTTATTTTG
1 TTTATCC-ATTATGATACCTGTACTTTTATTTTG
13628398 TTTAT-CATTATGATACCTGTACTTTTATTTTG
1 TTTATCCATTATGATACCTGTACTTTTATTTTG
13628430 TTTAT-CATTATGATACCT
1 TTTATCCATTATGATACCT
13628448 ATTTATAACG
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
31 3 0.07
32 38 0.83
33 5 0.11
ACGTcount: A:0.22, C:0.12, G:0.10, T:0.57
Consensus pattern (33 bp):
TTTATCCATTATGATACCTGTACTTTTATTTTG
Found at i:13628424 original size:32 final size:32
Alignment explanation
Indices: 13628382--13628447 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
13628372 AATTTGGTAT
*
13628382 CTGTATTTTTATTTTGTTTATCATTATGATAC
1 CTGTACTTTTATTTTGTTTATCATTATGATAC
13628414 CTGTACTTTTATTTTGTTTATCATTATGATAC
1 CTGTACTTTTATTTTGTTTATCATTATGATAC
13628446 CT
1 CT
13628448 ATTTATAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (32 bp):
CTGTACTTTTATTTTGTTTATCATTATGATAC
Found at i:13630187 original size:65 final size:65
Alignment explanation
Indices: 13630111--13630241 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
13630101 ACTATTATTA
*
13630111 GATTATGATTTTGATCAAGCTTCTCAATAAAAGCTTAAAATTAAACCGAAAAGACCGGGTAACTT
1 GATTATGATTTTGATCAAGCTTCTCAATAAAAGCTTAAAATTAAACCGAAAAGACCGAGTAACTT
*
13630176 GATTATGATTTTGATCAAGCTTCTCAATAAAAGCTTAAAATTAAACCGAAAAGACTGAGTAACTT
1 GATTATGATTTTGATCAAGCTTCTCAATAAAAGCTTAAAATTAAACCGAAAAGACCGAGTAACTT
13630241 G
1 G
13630242 CAACTCGCTA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (65 bp):
GATTATGATTTTGATCAAGCTTCTCAATAAAAGCTTAAAATTAAACCGAAAAGACCGAGTAACTT
Found at i:13636262 original size:32 final size:32
Alignment explanation
Indices: 13636221--13636286 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
13636211 TTATGACTAT
13636221 GATTGACTTGGATTTTCTAGAAATGAAATATC
1 GATTGACTTGGATTTTCTAGAAATGAAATATC
13636253 GATTGACTTGGATTTTCTAGAAATGAAATATC
1 GATTGACTTGGATTTTCTAGAAATGAAATATC
13636285 GA
1 GA
13636287 AAACATAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (32 bp):
GATTGACTTGGATTTTCTAGAAATGAAATATC
Found at i:13638141 original size:13 final size:13
Alignment explanation
Indices: 13638123--13638188 Score: 71
Period size: 13 Copynumber: 5.1 Consensus size: 13
13638113 CTAGTTTGGC
13638123 AATGCTTTTGAAA
1 AATGCTTTTGAAA
13638136 AATGCTTTTGAAA
1 AATGCTTTTGAAA
* *
13638149 AGTGC-TGTGAAA
1 AATGCTTTTGAAA
**
13638161 AAGTGCTTTTGAGG
1 AA-TGCTTTTGAAA
*
13638175 AGTGCTTTTGAAA
1 AATGCTTTTGAAA
13638188 A
1 A
13638189 GTTTGTTTAA
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
12 7 0.17
13 30 0.71
14 5 0.12
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (13 bp):
AATGCTTTTGAAA
Found at i:13638188 original size:26 final size:26
Alignment explanation
Indices: 13638125--13638190 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
13638115 AGTTTGGCAA
*
13638125 TGCTTTTGAAAAATGCTTTTGAAAAG
1 TGCTTTTGAAAAGTGCTTTTGAAAAG
* **
13638151 TGC-TGTGAAAAAGTGCTTTTGAGGAG
1 TGCTTTTG-AAAAGTGCTTTTGAAAAG
13638177 TGCTTTTGAAAAGT
1 TGCTTTTGAAAAGT
13638191 TTGTTTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
25 3 0.09
26 27 0.82
27 3 0.09
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.36
Consensus pattern (26 bp):
TGCTTTTGAAAAGTGCTTTTGAAAAG
Found at i:13638501 original size:21 final size:22
Alignment explanation
Indices: 13638455--13638502 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
13638445 TAAACTATAT
13638455 TTTAAATATTTAAATATAACTA
1 TTTAAATATTTAAATATAACTA
*
13638477 -TTAAATATTTGTAAT-TAA-TA
1 TTTAAATATTT-AAATATAACTA
13638497 TTTAAA
1 TTTAAA
13638503 AAAATATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 2 0.09
21 18 0.78
22 3 0.13
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTAAATATTTAAATATAACTA
Found at i:13641767 original size:82 final size:81
Alignment explanation
Indices: 13641611--13641768 Score: 194
Period size: 82 Copynumber: 1.9 Consensus size: 81
13641601 CTTAGGGCCC
** * * *
13641611 CAAAATGAAAAAAATTCAATCTTGTCCTTTTATAAATAAATAACCTATAAATTAATATATAGTAC
1 CAAAATGAAAAAAATTCAATCTAATCCTCTTATAAATAAAGAAACTATAAATTAATATATAG-AC
*
13641676 AATTGCACTTTGGTACT
65 AATTACACTTTGGTACT
* *
13641693 CAAAATGAAAAAATTTCAAT-TCAATCCTCTTATAAATAAAGAAATTATAAATTAATATATA-AC
1 CAAAATGAAAAAAATTCAATCT-AATCCTCTTATAAATAAAGAAACTATAAATTAATATATAGAC
13641756 AAAGTTACACTTT
65 -AA-TTACACTTT
13641769 AGCTCTCTTA
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
80 2 0.03
81 3 0.05
82 60 0.92
ACGTcount: A:0.47, C:0.13, G:0.06, T:0.34
Consensus pattern (81 bp):
CAAAATGAAAAAAATTCAATCTAATCCTCTTATAAATAAAGAAACTATAAATTAATATATAGACA
ATTACACTTTGGTACT
Found at i:13651096 original size:11 final size:11
Alignment explanation
Indices: 13651080--13651104 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
13651070 AATTATTTCC
13651080 TAAATCAAATA
1 TAAATCAAATA
13651091 TAAATCAAATA
1 TAAATCAAATA
13651102 TAA
1 TAA
13651105 GTATAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
TAAATCAAATA
Found at i:13657352 original size:22 final size:22
Alignment explanation
Indices: 13657316--13657367 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 22
13657306 TATTGGTAAT
*
13657316 AATATATAATTAATTTTAAATATA
1 AATATATAA-TAATTATAAA-ATA
*
13657340 TATATATAA-AATTATAAAATA
1 AATATATAATAATTATAAAATA
13657361 AATATAT
1 AATATAT
13657368 GTAAAGTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 9 0.36
22 8 0.32
24 8 0.32
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
AATATATAATAATTATAAAATA
Found at i:13657381 original size:23 final size:23
Alignment explanation
Indices: 13657333--13657381 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
13657323 AATTAATTTT
* *
13657333 AAATATATATATATAAAATTATA
1 AAATAAATATATATAAAAGTATA
*
13657356 AAATAAATATATGT-AAAGTATGA
1 AAATAAATATATATAAAAGTAT-A
13657379 AAA
1 AAA
13657382 CGTGTGGGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (23 bp):
AAATAAATATATATAAAAGTATA
Found at i:13663721 original size:1 final size:1
Alignment explanation
Indices: 13663717--13663743 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
13663707 CAGGGGGGGG
13663717 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
13663744 GGGGTTTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:13663868 original size:4 final size:4
Alignment explanation
Indices: 13663859--13663884 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
13663849 TTTTTTAAAT
13663859 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
13663885 AATGAAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:13666858 original size:27 final size:27
Alignment explanation
Indices: 13666806--13666859 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
13666796 ACTTAATTTA
* *
13666806 TATTTTTTTAAAAAATTGGGTTTTTAAT
1 TATTTTTTTAAAAAA-TAGCTTTTTAAT
13666834 TATTTTTTTAAAAAA-AGCTTCTTTAA
1 TATTTTTTTAAAAAATAGCTT-TTTAA
13666860 AGTTTTGTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 3 0.13
27 5 0.22
28 15 0.65
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (27 bp):
TATTTTTTTAAAAAATAGCTTTTTAAT
Found at i:13670387 original size:11 final size:11
Alignment explanation
Indices: 13670371--13670397 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
13670361 TATAATATTT
13670371 TAATTTTTCTA
1 TAATTTTTCTA
13670382 TAATTTTTCTA
1 TAATTTTTCTA
13670393 TAATT
1 TAATT
13670398 AAAGTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (11 bp):
TAATTTTTCTA
Found at i:13674738 original size:22 final size:22
Alignment explanation
Indices: 13674691--13674738 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
13674681 ATATTTTAAT
* * *
13674691 TTTATTCTTTAAAAATTATATT
1 TTTATTATTTAAAAATTACATA
13674713 TTTATTATTGTAAAAATTACA-A
1 TTTATTATT-TAAAAATTACATA
13674735 TTTA
1 TTTA
13674739 ATTTTTATCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (22 bp):
TTTATTATTTAAAAATTACATA
Found at i:13676865 original size:12 final size:12
Alignment explanation
Indices: 13676850--13676881 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
13676840 ATCACCACCC
13676850 CCACCACCGCCG
1 CCACCACCGCCG
*
13676862 CCACCGCCGCCG
1 CCACCACCGCCG
13676874 CCACCACC
1 CCACCACC
13676882 ACCCATTGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.69, G:0.16, T:0.00
Consensus pattern (12 bp):
CCACCACCGCCG
Found at i:13678937 original size:21 final size:24
Alignment explanation
Indices: 13678905--13678952 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 24
13678895 AGTATTGATT
13678905 TAAAAAGTGTTA-AATT-T-TTTA
1 TAAAAAGTGTTACAATTGTATTTA
13678926 TAAAAA-TCGTTACAATTGTATTTA
1 TAAAAAGT-GTTACAATTGTATTTA
13678950 TAA
1 TAA
13678953 CAGCTCAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
20 1 0.04
21 10 0.43
22 4 0.17
23 1 0.04
24 7 0.30
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (24 bp):
TAAAAAGTGTTACAATTGTATTTA
Found at i:13680152 original size:4 final size:4
Alignment explanation
Indices: 13680143--13680167 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
13680133 TATCAAAATG
13680143 TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA T
13680168 TTTTAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:13685002 original size:4 final size:4
Alignment explanation
Indices: 13684993--13685024 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
13684983 AAAATCCTCC
13684993 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
13685025 ATGTATATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:13689883 original size:19 final size:20
Alignment explanation
Indices: 13689859--13689898 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
13689849 AGACTGAGAG
13689859 AGTGAAACAG-ATCCAAGAA
1 AGTGAAACAGAATCCAAGAA
*
13689878 AGTGAATCAGAATCCAAGAA
1 AGTGAAACAGAATCCAAGAA
13689898 A
1 A
13689899 ATAGAGAGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.53, C:0.15, G:0.20, T:0.12
Consensus pattern (20 bp):
AGTGAAACAGAATCCAAGAA
Found at i:13690182 original size:29 final size:29
Alignment explanation
Indices: 13690141--13690198 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
13690131 TTATAAGGAT
* *
13690141 TGGATCAAATTAGTCCTTTTATTATTAAA
1 TGGATCAAATTAGTCCATATATTATTAAA
*
13690170 TGGATCAATTTAGTCCATATATTATTAAA
1 TGGATCAAATTAGTCCATATATTATTAAA
13690199 AAAAATTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.43
Consensus pattern (29 bp):
TGGATCAAATTAGTCCATATATTATTAAA
Found at i:13690855 original size:22 final size:23
Alignment explanation
Indices: 13690830--13690880 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
13690820 TAAACCCTCA
13690830 AAATCTT-TTAAAAATTATT-ATT
1 AAATCTTCTTAAAAATT-TTAATT
13690852 AAAT-TTCTTAAAAATTTTAATT
1 AAATCTTCTTAAAAATTTTAATT
13690874 AAATCTT
1 AAATCTT
13690881 AAAATTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.15
22 20 0.77
23 2 0.08
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (23 bp):
AAATCTTCTTAAAAATTTTAATT
Found at i:13691342 original size:60 final size:60
Alignment explanation
Indices: 13691247--13691372 Score: 182
Period size: 60 Copynumber: 2.1 Consensus size: 60
13691237 TTTTACTTTC
* * * * *
13691247 GTGTCGAATGAATTTTAGTTTGATTAGTATGAATATTATTGTCAATGCAAGAGGGTGTGA
1 GTGTCGAATGAATCTTAATTTGATTAGTATAAATATTATTGCCAATGCAAGAGGATGTGA
* *
13691307 GTGTCGATTGAGTCTTAATTTGATTAGTATAAATATTATTGCCAATGCAAGAGGATGTGA
1 GTGTCGAATGAATCTTAATTTGATTAGTATAAATATTATTGCCAATGCAAGAGGATGTGA
13691367 GT-TCGA
1 GTGTCGA
13691373 GTGCGTTGAA
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
59 4 0.07
60 55 0.93
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.37
Consensus pattern (60 bp):
GTGTCGAATGAATCTTAATTTGATTAGTATAAATATTATTGCCAATGCAAGAGGATGTGA
Found at i:13695348 original size:15 final size:18
Alignment explanation
Indices: 13695314--13695349 Score: 51
Period size: 15 Copynumber: 2.2 Consensus size: 18
13695304 TAAAACACAA
13695314 TTTTATCATTGTATTAAT
1 TTTTATCATTGTATTAAT
13695332 TTTTATC-TT-TA-TAAT
1 TTTTATCATTGTATTAAT
13695347 TTT
1 TTT
13695350 AAAAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.39
16 2 0.11
17 2 0.11
18 7 0.39
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.67
Consensus pattern (18 bp):
TTTTATCATTGTATTAAT
Found at i:13714165 original size:16 final size:16
Alignment explanation
Indices: 13714132--13714165 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
13714122 GTTGATTGTT
* *
13714132 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
13714148 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
13714164 AA
1 AA
13714166 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:13716996 original size:21 final size:21
Alignment explanation
Indices: 13716970--13717010 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
13716960 AGACGAGCAA
* *
13716970 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
13716991 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
13717011 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:13718949 original size:16 final size:16
Alignment explanation
Indices: 13718916--13718949 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
13718906 GGAGATTGTT
* *
13718916 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
13718932 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
13718948 AA
1 AA
13718950 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:13726681 original size:19 final size:19
Alignment explanation
Indices: 13726657--13726694 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
13726647 GGAGAAAAGA
13726657 TGGATTCTCGATGATCCCC
1 TGGATTCTCGATGATCCCC
13726676 TGGATTCTCGATGATCCCC
1 TGGATTCTCGATGATCCCC
13726695 GAATAGGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.21, T:0.32
Consensus pattern (19 bp):
TGGATTCTCGATGATCCCC
Found at i:13732545 original size:23 final size:26
Alignment explanation
Indices: 13732514--13732560 Score: 64
Period size: 23 Copynumber: 1.9 Consensus size: 26
13732504 GGATTAGTTT
13732514 GATTGAAAAT-T-AAA-TAGATTATC
1 GATTGAAAATATGAAATTAGATTATC
*
13732537 GATTTAAAATATGAAATTAGATTA
1 GATTGAAAATATGAAATTAGATTA
13732561 GTTATTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 3 0.15
26 7 0.35
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (26 bp):
GATTGAAAATATGAAATTAGATTATC
Found at i:13732988 original size:38 final size:38
Alignment explanation
Indices: 13732946--13733041 Score: 104
Period size: 40 Copynumber: 2.5 Consensus size: 38
13732936 TCATCATACT
*
13732946 TTATTAAACTATTGATTTTACTAATTTATT-AGTATAAA
1 TTATTAAACTATTGATTTTACTAATTTATTGA-TAGAAA
* **
13732984 TTATTAAACTGTTGACTTTTGTTAATTTATTGCATAGAAA
1 TTATTAAACTATTGA-TTTTACTAATTTATTG-ATAGAAA
**
13733024 TTATTGCACTATTGATTT
1 TTATTAAACTATTGATTT
13733042 CAAGGGCAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
38 14 0.29
39 16 0.33
40 17 0.35
41 1 0.02
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.50
Consensus pattern (38 bp):
TTATTAAACTATTGATTTTACTAATTTATTGATAGAAA
Found at i:13735847 original size:14 final size:14
Alignment explanation
Indices: 13735828--13735865 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
13735818 AGATTGATAA
13735828 AAAAAGAAAAAAAG
1 AAAAAGAAAAAAAG
**
13735842 AAAAAGAAAAACTG
1 AAAAAGAAAAAAAG
13735856 AAAAAGAAAA
1 AAAAAGAAAA
13735866 TAGAATAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (14 bp):
AAAAAGAAAAAAAG
Found at i:13751499 original size:22 final size:20
Alignment explanation
Indices: 13751474--13751531 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 20
13751464 TAGTTTGTAA
13751474 ATAATATATTATTAGTATAATT
1 ATAATATATTATTAG-ATAA-T
*
13751496 ATAATATATTAGATTAGATTAT
1 ATAATATATT--ATTAGATAAT
13751518 ATAATTATATTATT
1 ATAA-TATATTATT
13751532 TCTAAAGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
21 3 0.09
22 15 0.47
23 9 0.28
24 5 0.16
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
ATAATATATTATTAGATAAT
Found at i:13751883 original size:31 final size:30
Alignment explanation
Indices: 13751798--13751886 Score: 99
Period size: 30 Copynumber: 2.9 Consensus size: 30
13751788 AAATAGTCGT
* *
13751798 TAAACTATTAAAAAGTTTTTGTTTAAGTCAT
1 TAAACTATT-AAAAGTTTTTATTTAAGTCAC
*
13751829 TAAACTATTAAAAGTTTTCATTTAAGTCAC
1 TAAACTATTAAAAGTTTTTATTTAAGTCAC
* *
13751859 TAAA-TCATTCGAACGTTTTTATTTAAGT
1 TAAACT-ATT-AAAAGTTTTTATTTAAGT
13751887 TATTAGACTG
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.02
30 25 0.50
31 24 0.48
ACGTcount: A:0.37, C:0.10, G:0.09, T:0.44
Consensus pattern (30 bp):
TAAACTATTAAAAGTTTTTATTTAAGTCAC
Found at i:13753083 original size:15 final size:15
Alignment explanation
Indices: 13753061--13753100 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
13753051 TTTTCCCTCA
*
13753061 TCTTTTATTCTAACTT
1 TCTTTTATT-TAAATT
13753077 T-TTTTATTTAAATT
1 TCTTTTATTTAAATT
13753091 TCTTTTATTT
1 TCTTTTATTT
13753101 TTTCCTCGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 6 0.27
15 15 0.68
16 1 0.05
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (15 bp):
TCTTTTATTTAAATT
Found at i:13754103 original size:27 final size:27
Alignment explanation
Indices: 13754073--13754129 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
13754063 CATGGTCCTC
13754073 CATCTCTTTCCCCATATCATTCACCAA
1 CATCTCTTTCCCCATATCATTCACCAA
13754100 CATCTCTTTCCCCATATCATTCACCAA
1 CATCTCTTTCCCCATATCATTCACCAA
13754127 CAT
1 CAT
13754130 TAGCACCGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.26, C:0.40, G:0.00, T:0.33
Consensus pattern (27 bp):
CATCTCTTTCCCCATATCATTCACCAA
Found at i:13757619 original size:3 final size:3
Alignment explanation
Indices: 13757611--13757635 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
13757601 ACTTGATAAC
13757611 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
13757636 CTAACTGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:13768816 original size:28 final size:26
Alignment explanation
Indices: 13768784--13768836 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 26
13768774 ATCCACAAAA
13768784 TAATA-TTTAACCTAATCTTAGTTATTTT
1 TAATAGTTTAA-CTAAT-TTA-TTATTTT
*
13768812 TAATAGTTTTACTAATTTATTATTT
1 TAATAGTTTAACTAATTTATTATTT
13768837 ATATTTAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 6 0.26
27 3 0.13
28 10 0.43
29 4 0.17
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.57
Consensus pattern (26 bp):
TAATAGTTTAACTAATTTATTATTTT
Found at i:13773064 original size:20 final size:20
Alignment explanation
Indices: 13773041--13773078 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
13773031 ATATTAAAGT
*
13773041 TAAATTAATCAATTTAATAA
1 TAAAATAATCAATTTAATAA
*
13773061 TAAAATAATTAATTTAAT
1 TAAAATAATCAATTTAAT
13773079 CCAATCCCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAAATAATCAATTTAATAA
Found at i:13779375 original size:131 final size:131
Alignment explanation
Indices: 13779198--13779456 Score: 412
Period size: 131 Copynumber: 2.0 Consensus size: 131
13779188 AAACCCCATA
* *
13779198 CATTAAATCAAAGAGCAAATTAATCATTTTTATAAAAAAATTATTTATTTATACGGTTAAAAACT
1 CATTAAATCAAAGAGCAAATTAATCATTTCTATAAAAAAATTATTTATTTATACAGTTAAAAACT
* *
13779263 GACGTGCCACATGTACATCATGCTGGTGTACAAAGACCAGCTTTTAACCGTAGGAATGGATGAGT
66 GACGCGCAACATGTACATCATGCTGGTGTACAAAGACCAGCTTTTAACCGTAGGAATGGATGAGT
13779328 G
131 G
* * * *
13779329 CATTTAATCAAAGAGCAAATTAATTATTTCTAT-AAAAATTTCATTTATTTATACAGTTAAAAAT
1 CATTAAATCAAAGAGCAAATTAATCATTTCTATAAAAAAATT-ATTTATTTATACAGTTAAAAAC
* *
13779393 TGACGCGCAACATGTACATCATGTTGGTGTACAAAGACCAGCTTTTAACTGTAGGAATGGATGA
65 TGACGCGCAACATGTACATCATGCTGGTGTACAAAGACCAGCTTTTAACCGTAGGAATGGATGA
13779457 AATTCTAATA
Statistics
Matches: 117, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
130 7 0.06
131 110 0.94
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (131 bp):
CATTAAATCAAAGAGCAAATTAATCATTTCTATAAAAAAATTATTTATTTATACAGTTAAAAACT
GACGCGCAACATGTACATCATGCTGGTGTACAAAGACCAGCTTTTAACCGTAGGAATGGATGAGT
G
Found at i:13782318 original size:16 final size:16
Alignment explanation
Indices: 13782282--13782328 Score: 62
Period size: 15 Copynumber: 3.0 Consensus size: 16
13782272 GCCTTATCAA
13782282 ATTAAATTATATTATT
1 ATTAAATTATATTATT
*
13782298 A-TAAATATTTATT-TT
1 ATTAAAT-TATATTATT
13782313 ATTAAATTATATTATT
1 ATTAAATTATATTATT
13782329 GCCTTTAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTAAATTATATTATT
Found at i:13785497 original size:8 final size:8
Alignment explanation
Indices: 13785484--13785510 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
13785474 CTGCAATATT
13785484 TGTGTAAA
1 TGTGTAAA
13785492 TGTGTAAA
1 TGTGTAAA
13785500 TGTGTAAA
1 TGTGTAAA
13785508 TGT
1 TGT
13785511 TCTAAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (8 bp):
TGTGTAAA
Found at i:13787490 original size:27 final size:27
Alignment explanation
Indices: 13787438--13787490 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
13787428 AAAAATTATC
* *
13787438 AAGTTTTGAGACTAATTTGAATAAAAA
1 AAGTTTTGAGACCAATTGGAATAAAAA
13787465 AAGTTTTGAGACCAAGTTGGAA-AAAA
1 AAGTTTTGAGACCAA-TTGGAATAAAA
13787491 GTTTCCAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 18 0.78
28 5 0.22
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (27 bp):
AAGTTTTGAGACCAATTGGAATAAAAA
Found at i:13789608 original size:2 final size:2
Alignment explanation
Indices: 13789601--13789640 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
13789591 TTTGCCTGGT
13789601 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
13789641 ATATTTAGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:13791329 original size:38 final size:37
Alignment explanation
Indices: 13791272--13791348 Score: 145
Period size: 38 Copynumber: 2.1 Consensus size: 37
13791262 CAGTACATGT
13791272 TTGCTGAACCTCATGATTTTTCAGCACAAGAATTACG
1 TTGCTGAACCTCATGATTTTTCAGCACAAGAATTACG
13791309 TTGCTGAACCGTCATGATTTTTCAGCACAAGAATTACG
1 TTGCTGAACC-TCATGATTTTTCAGCACAAGAATTACG
13791347 TT
1 TT
13791349 AACACCGGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
37 10 0.26
38 29 0.74
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.34
Consensus pattern (37 bp):
TTGCTGAACCTCATGATTTTTCAGCACAAGAATTACG
Found at i:13792052 original size:21 final size:22
Alignment explanation
Indices: 13792018--13792062 Score: 83
Period size: 21 Copynumber: 2.1 Consensus size: 22
13792008 TATGTTCTTA
13792018 TTAATTAGATTAAAGAGCAAAT
1 TTAATTAGATTAAAGAGCAAAT
13792040 TTAATTA-ATTAAAGAGCAAAT
1 TTAATTAGATTAAAGAGCAAAT
13792061 TT
1 TT
13792063 GTCATTCTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.49, C:0.04, G:0.11, T:0.36
Consensus pattern (22 bp):
TTAATTAGATTAAAGAGCAAAT
Found at i:13797184 original size:21 final size:22
Alignment explanation
Indices: 13797143--13797189 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
13797133 ACTCTGCTAT
* *
13797143 TTTTGCTGTTGTTTTTTTCATA
1 TTTTACTGTTGTTTTTCTCATA
*
13797165 TTTTACTGTTG-TTTTCTCATT
1 TTTTACTGTTGTTTTTCTCATA
13797186 TTTT
1 TTTT
13797190 GTCATTGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.09, C:0.11, G:0.11, T:0.70
Consensus pattern (22 bp):
TTTTACTGTTGTTTTTCTCATA
Found at i:13797382 original size:14 final size:16
Alignment explanation
Indices: 13797365--13797398 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
13797355 TATAAATACT
13797365 TTTTTA-AAA-ATTTA
1 TTTTTAGAAATATTTA
13797379 TTTTTAGAAATATTTA
1 TTTTTAGAAATATTTA
13797395 TTTT
1 TTTT
13797399 AATATTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 3 0.17
16 9 0.50
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTTTAGAAATATTTA
Found at i:13802619 original size:15 final size:16
Alignment explanation
Indices: 13802601--13802631 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
13802591 ATTTGAAAAT
13802601 TAATTAA-AAATTTTA
1 TAATTAATAAATTTTA
13802616 TAATTAATAAATTTTA
1 TAATTAATAAATTTTA
13802632 ATATCTGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TAATTAATAAATTTTA
Found at i:13807402 original size:22 final size:23
Alignment explanation
Indices: 13807352--13807396 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
13807342 ACACCATAAA
*
13807352 CACATCTCGAAAAAGCAACACTT
1 CACATCTCAAAAAAGCAACACTT
13807375 CACATCTCAAAAAAGCAACACT
1 CACATCTCAAAAAAGCAACACT
13807397 GACATCGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.47, C:0.31, G:0.07, T:0.16
Consensus pattern (23 bp):
CACATCTCAAAAAAGCAACACTT
Found at i:13811118 original size:51 final size:51
Alignment explanation
Indices: 13811042--13811144 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
13811032 TGCCAAAGCT
13811042 TATAACAACATGATCCTCAATAGCTGCGAGCCCTATAATACTAACAATGGA
1 TATAACAACATGATCCTCAATAGCTGCGAGCCCTATAATACTAACAATGGA
*
13811093 TATAACAACATGATCCTCAATAGCTGCGAGCCGTATAATACTAACAATGGA
1 TATAACAACATGATCCTCAATAGCTGCGAGCCCTATAATACTAACAATGGA
13811144 T
1 T
13811145 TTTAAAACTA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (51 bp):
TATAACAACATGATCCTCAATAGCTGCGAGCCCTATAATACTAACAATGGA
Found at i:13818143 original size:31 final size:31
Alignment explanation
Indices: 13818078--13818144 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
13818068 AACAAACAAC
* * *
13818078 AATTTGACTCTTTTTAGAAGTTTGATAGTCA
1 AATTTGACTCTTTTTAAAAGGTTGATAGGCA
*
13818109 AATTTGTCTCTTTTTAAAAGGTTGA-AGGCTA
1 AATTTGACTCTTTTTAAAAGGTTGATAGGC-A
13818140 AATTT
1 AATTT
13818145 AGCTTAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 3 0.10
31 28 0.90
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (31 bp):
AATTTGACTCTTTTTAAAAGGTTGATAGGCA
Found at i:13820687 original size:86 final size:86
Alignment explanation
Indices: 13820586--13820762 Score: 327
Period size: 86 Copynumber: 2.1 Consensus size: 86
13820576 AACCCCTATG
* *
13820586 CATTAGATCAAAAAACAAAATGGTCATTTTATTAAAAATTTAACGTTATAAACTGTCTTGGCTAA
1 CATTAGATCAAAAAACAAAATGATCATTTTATTAAAAATTTAACGTTATAAACTGACTTGGCTAA
13820651 TGAAATAACCAAACAATTAAA
66 TGAAATAACCAAACAATTAAA
*
13820672 CATTAGATCAAAAAACAAAATGATCATTTTATTAAAAATTTAATGTTATAAACTGACTTGGCTAA
1 CATTAGATCAAAAAACAAAATGATCATTTTATTAAAAATTTAACGTTATAAACTGACTTGGCTAA
13820737 TGAAATAACCAAACAATTAAA
66 TGAAATAACCAAACAATTAAA
13820758 CATTA
1 CATTA
13820763 CATGTCACGT
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.31
Consensus pattern (86 bp):
CATTAGATCAAAAAACAAAATGATCATTTTATTAAAAATTTAACGTTATAAACTGACTTGGCTAA
TGAAATAACCAAACAATTAAA
Found at i:13831051 original size:11 final size:11
Alignment explanation
Indices: 13831035--13831060 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
13831025 GTCGCCTCTT
13831035 CCTTCGTTCTA
1 CCTTCGTTCTA
13831046 CCTTCGTTCTA
1 CCTTCGTTCTA
13831057 CCTT
1 CCTT
13831061 TGCCTCCCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.38, G:0.08, T:0.46
Consensus pattern (11 bp):
CCTTCGTTCTA
Found at i:13834095 original size:16 final size:16
Alignment explanation
Indices: 13834074--13834115 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
13834064 TTATTAAATT
*
13834074 ATATATTTTAATTATA
1 ATATATTTTAATAATA
13834090 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
13834105 AT-TATGTTTAA
1 ATATAT-TTTAA
13834116 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:13834100 original size:15 final size:15
Alignment explanation
Indices: 13834065--13834106 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
13834055 TTAAGAATTT
*
13834065 TATTAAATTAT-ATA
1 TATTTAATTATAATA
13834079 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
13834093 TATTTAATAATAAT
1 TATTTAATTATAAT
13834107 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:13834246 original size:18 final size:17
Alignment explanation
Indices: 13834218--13834252 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
13834208 ATTATTAAGA
*
13834218 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
13834235 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
13834253 TTAAAAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:13834335 original size:157 final size:157
Alignment explanation
Indices: 13834049--13834365 Score: 562
Period size: 157 Copynumber: 2.0 Consensus size: 157
13834039 ATAAGAATAT
* *
13834049 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATGTTT
*
13834114 AAATATGATTAAAATATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
13834179 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
*
13834206 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATTTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATGTTT
* *
13834271 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAATAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
13834336 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
13834363 TAA
1 TAA
13834366 GGGTATTCTA
Statistics
Matches: 152, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
157 152 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAAAAATAATTATGTTT
AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:13834512 original size:16 final size:16
Alignment explanation
Indices: 13834488--13834539 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
13834478 GATTTGCTAT
13834488 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
13834504 TACAGCTCTAATCCAA
1 TACACCTCTAATCCAA
13834520 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
13834536 TACA
1 TACA
13834540 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.38, C:0.35, G:0.02, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:13852010 original size:29 final size:28
Alignment explanation
Indices: 13851935--13852010 Score: 66
Period size: 28 Copynumber: 2.7 Consensus size: 28
13851925 AAATTTTAAA
* * *
13851935 AAATTTTCATTTAAGTCCTTTAATTTTTT
1 AAATTTTCAATTAAG-CTTTTAAGTTTTT
* *
13851964 AAATTTTACCA-T-ACCTTTTAAAGTTTTT
1 AAATTTT-CAATTAAGCTTTT-AAGTTTTT
13851992 AAATTTTCAATTAAGCTTT
1 AAATTTTCAATTAAGCTTT
13852011 AAAAACTTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
27 6 0.17
28 16 0.44
29 13 0.36
30 1 0.03
ACGTcount: A:0.32, C:0.12, G:0.04, T:0.53
Consensus pattern (28 bp):
AAATTTTCAATTAAGCTTTTAAGTTTTT
Found at i:13856912 original size:4 final size:4
Alignment explanation
Indices: 13856893--13856926 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
13856883 TCGTTGATGG
* *
13856893 TGTA AGTA TATA TGTA TGTA TGTA TGTA TGTA TG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG
13856927 CACGTAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (4 bp):
TGTA
Found at i:13860481 original size:11 final size:12
Alignment explanation
Indices: 13860467--13860499 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
13860457 TATATATTTT
13860467 AAAATT-ATATA
1 AAAATTAATATA
13860478 AAAATTAATAT-
1 AAAATTAATATA
13860489 AAAATTAATAT
1 AAAATTAATAT
13860500 GGGCGGATCG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:13863156 original size:72 final size:72
Alignment explanation
Indices: 13863067--13863482 Score: 665
Period size: 72 Copynumber: 5.8 Consensus size: 72
13863057 GGTCACTGTC
* * * *
13863067 CCACCAG-TGACAGTCCCTCCAATAGTAAAACCA-CCAGTTACAGTCCCACCAGTGACTGTTCCT
1 CCACCAGTTGA-ACTCCCTCCGATTGCAAAACCACCCA-TTACAGTCCCACCAGTGACTGTTCCT
*
13863130 CCTGTGAAG
64 CCTGTAAAG
13863139 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
1 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
13863204 TGTAAAG
66 TGTAAAG
*
13863211 CCACCTGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
1 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
*
13863276 TGTGAAG
66 TGTAAAG
13863283 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
1 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
13863348 TGTAAAG
66 TGTAAAG
*
13863355 CCACCTGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
1 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
13863420 TGTAAAG
66 TGTAAAG
* * * * * * *
13863427 CCACCTGTTGATCTCCCTCCAATTGCTAAGCCACCCATTACGGTTCCACCAGTGAC
1 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGAC
13863483 CATCCCTCCA
Statistics
Matches: 326, Mismatches: 16, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
72 320 0.98
73 6 0.02
ACGTcount: A:0.25, C:0.37, G:0.15, T:0.23
Consensus pattern (72 bp):
CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
TGTAAAG
Found at i:13863267 original size:144 final size:144
Alignment explanation
Indices: 13863080--13863713 Score: 901
Period size: 144 Copynumber: 4.3 Consensus size: 144
13863070 CCAGTGACAG
* *
13863080 TCCCTCCAATAGTAAAACCA-CCAGTTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
1 TCCCTCCAATTGCAAAACCACCCA-TTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
*
13863144 AGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAA
65 AGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAA
13863209 AGCCACCTGTTGAAC
130 AGCCACCTGTTGAAC
*
13863224 TCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCA
1 TCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCA
*
13863289 GTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAA
66 GTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAA
13863354 GCCACCTGTTGAAC
131 GCCACCTGTTGAAC
* * *
13863368 TCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCT
1 TCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCA
* * * *
13863433 GTTGATCTCCCTCCAATTGCTAAGCCACCCATTACGGTTCCACCAGTGACCATCCCTCCAGTGAC
66 GTTGAACTCCCTCCAATTGCAAAACCACCC---A---TT--A-CA--G----TCCCACCAGTGAC
* *
13863498 TGTTCCTCCTGTTAAGCCACCTGTTGATC
116 TGTTCCTCCTGTAAAGCCACCTGTTGAAC
* *
13863527 TCCCTCCAATTGCAAAGCCACCCATTACAGTTCCACCAGTGACTGTTCCTCCTGTGAAGCCACCA
1 TCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCA
* * *
13863592 GTTGAGCTCCCTCCAATTGCAAAGCCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAA
66 GTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAA
* *
13863657 GCCACCAGTTGACC
131 GCCACCTGTTGAAC
* * *
13863671 TCCCTCCAATTGCAAAACCGCCCATCACAGTCCCTCCAGTGAC
1 TCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGAC
13863714 CCTCCCAGTC
Statistics
Matches: 446, Mismatches: 28, Indels: 32
0.88 0.06 0.06
Matches are distributed among these distances:
144 302 0.68
145 3 0.01
147 1 0.00
148 1 0.00
150 4 0.01
151 1 0.00
152 1 0.00
153 4 0.01
155 1 0.00
156 1 0.00
159 127 0.28
ACGTcount: A:0.24, C:0.38, G:0.15, T:0.24
Consensus pattern (144 bp):
TCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCA
GTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAA
GCCACCTGTTGAAC
Found at i:13863445 original size:216 final size:216
Alignment explanation
Indices: 13863067--13863713 Score: 911
Period size: 231 Copynumber: 2.9 Consensus size: 216
13863057 GGTCACTGTC
* * *
13863067 CCACCAG-TGACAGTCCCTCCAATAGTAAAACCA-CCAGTTACAGTCCCACCAGTGACTGTTCCT
1 CCACCAGTTGA-ACTCCCTCCAATTGCAAAACCACCCA-TTACAGTCCCACCAGTGACTGTTCCT
13863130 CCTGTGAAGCCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGAC
64 CCTGTGAAGCCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGAC
* *
13863195 TGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCAC
129 TGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCTC
13863260 CAGTGACTGTTCCTCCTGTGAAG
194 CAGTGACTGTTCCTCCTGTGAAG
*
13863283 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
1 CCACCAGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
* *
13863348 TGTAAAGCCACCTGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTG
66 TGTGAAGCCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTG
* * *
13863413 TTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCTAAGCCACCCATTACGGTTCCACCA
131 TTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCC---A---TT--A-CA
*
13863478 GTGACCATCCCTCCAGTGACTGTTCCTCCTGTTAAG
187 --G----TCCCTCCAGTGACTGTTCCTCCTGTGAAG
* * * *
13863514 CCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCCATTACAGTTCCACCAGTGACTGTTCCTCC
1 CCACCAGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
* * *
13863579 TGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAAGCCACCCATTACAGTCCCACCAGTGACTG
66 TGTGAAGCCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTG
* * * * *
13863644 TTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCGCCCATCACAGTCCCTCCA
131 TTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCTCCA
13863709 GTGAC
196 GTGAC
13863714 CCTCCCAGTC
Statistics
Matches: 385, Mismatches: 29, Indels: 34
0.86 0.06 0.08
Matches are distributed among these distances:
216 175 0.45
217 6 0.02
219 1 0.00
220 1 0.00
222 4 0.01
223 1 0.00
224 1 0.00
225 3 0.01
227 1 0.00
228 1 0.00
231 191 0.50
ACGTcount: A:0.24, C:0.38, G:0.15, T:0.23
Consensus pattern (216 bp):
CCACCAGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
TGTGAAGCCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTG
TTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCCATTACAGTCCCTCCA
GTGACTGTTCCTCCTGTGAAG
Found at i:13863548 original size:72 final size:72
Alignment explanation
Indices: 13863485--13863713 Score: 368
Period size: 72 Copynumber: 3.2 Consensus size: 72
13863475 CCAGTGACCA
* * * *
13863485 TCCCTCCAGTGACTGTTCCTCCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
1 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAGCCACCC
13863550 ATTACAG
66 ATTACAG
* *
13863557 TTCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAAGCCACCC
1 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAGCCACCC
13863622 ATTACAG
66 ATTACAG
* *
13863629 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCGCCC
1 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAGCCACCC
*
13863694 ATCACAG
66 ATTACAG
*
13863701 TCCCTCCAGTGAC
1 TCCCACCAGTGAC
13863714 CCTCCCAGTC
Statistics
Matches: 146, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 146 1.00
ACGTcount: A:0.22, C:0.38, G:0.15, T:0.24
Consensus pattern (72 bp):
TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAGCCACCC
ATTACAG
Found at i:13863565 original size:231 final size:242
Alignment explanation
Indices: 13863254--13863902 Score: 861
Period size: 231 Copynumber: 2.7 Consensus size: 242
13863244 CCCATTACAG
* * *
13863254 TCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCGATTGCAAAACCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAACTCCCTCCAATTGCAAAACCACCC
* * *
13863319 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCGATTGCAAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAA
* *
13863384 ACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAA
131 ACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAA
* *
13863449 TTGC-TAA-G-CCA-CCCA-T-TAC-G-G-T-T-CCACCAGTGACCA
196 TTGCAAAACGCCCATCACAGTCTACAGTGCTCTCCCACCAGTGACCA
* * * *
13863485 TCCCTCCAGTGACTGTTCCTCCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAACTCCCTCCAATTGCAAAACCACCC
* *
13863550 ATTACAGTTCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAA
* *
13863615 GCCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAA
131 ACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAA
* * * **
13863680 TTGCAAAACCGCCCATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTTACTG
196 TTGCAAAA-CGCCCATCACAGT--CTACAGTG---CT--C--TCCCACCAGTGACCA
*
13863737 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAACTCCCTCCAATTGCAAAACCACCC
* *
13863802 ATCACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAA
* * * *
13863867 ACCACCCATCACAGTCCCTCCAGTAACTGTCCCTCC
131 ACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
13863903 AGTGACTGTT
Statistics
Matches: 363, Mismatches: 34, Indels: 21
0.87 0.08 0.05
Matches are distributed among these distances:
231 184 0.51
232 2 0.01
234 1 0.00
235 3 0.01
236 3 0.01
237 1 0.00
240 2 0.01
241 1 0.00
242 1 0.00
246 1 0.00
251 1 0.00
252 163 0.45
ACGTcount: A:0.23, C:0.39, G:0.14, T:0.24
Consensus pattern (242 bp):
TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAACTCCCTCCAATTGCAAAACCACCC
ATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCAATTGCAAA
ACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAA
TTGCAAAACGCCCATCACAGTCTACAGTGCTCTCCCACCAGTGACCA
Found at i:13863578 original size:87 final size:87
Alignment explanation
Indices: 13863398--13863569 Score: 308
Period size: 87 Copynumber: 2.0 Consensus size: 87
13863388 CCCATTACAG
* *
13863398 TCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCTAAGCCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
*
13863463 ATTACGGTTCCACCAGTGACCA
66 ATTACAGTTCCACCAGTGACCA
*
13863485 TCCCTCCAGTGACTGTTCCTCCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
13863550 ATTACAGTTCCACCAGTGAC
66 ATTACAGTTCCACCAGTGAC
13863570 TGTTCCTCCT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 81 1.00
ACGTcount: A:0.22, C:0.38, G:0.15, T:0.26
Consensus pattern (87 bp):
TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
ATTACAGTTCCACCAGTGACCA
Found at i:13863650 original size:159 final size:159
Alignment explanation
Indices: 13863326--13863641 Score: 524
Period size: 159 Copynumber: 2.0 Consensus size: 159
13863316 CCCATTACAG
* *
13863326 TCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCGATTGCAAAACCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCC
* * *
13863391 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCTAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
* *
13863456 GCCACCCATTACGGTTCCACCAGTGACCA
131 GCCACCCATTACAGTCCCACCAGTGACCA
* * *
13863485 TCCCTCCAGTGACTGTTCCTCCTGTTAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACCC
1 TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCC
* *
13863550 ATTACAGTTCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
66 ATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
13863615 GCCACCCATTACAGTCCCACCAGTGAC
131 GCCACCCATTACAGTCCCACCAGTGAC
13863642 TGTTCCTCCT
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
159 145 1.00
ACGTcount: A:0.23, C:0.38, G:0.15, T:0.25
Consensus pattern (159 bp):
TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGAACTCCCTCCAATTGCAAAACCACCC
ATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAGCTCCCTCCAATTGCAAA
GCCACCCATTACAGTCCCACCAGTGACCA
Found at i:13863741 original size:15 final size:15
Alignment explanation
Indices: 13863721--13863758 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
13863711 GACCCTCCCA
*
13863721 GTCCCTCCAGTTACT
1 GTCCCTCCAGTGACT
13863736 GTCCCTCCAGTGACT
1 GTCCCTCCAGTGACT
*
13863751 GTTCCTCC
1 GTCCCTCC
13863759 TGTAAAGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.11, C:0.42, G:0.16, T:0.32
Consensus pattern (15 bp):
GTCCCTCCAGTGACT
Found at i:13863760 original size:108 final size:108
Alignment explanation
Indices: 13863623--13863821 Score: 353
Period size: 108 Copynumber: 1.8 Consensus size: 108
13863613 AAGCCACCCA
*
13863623 TTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
1 TTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
* *
13863688 CCGCCCATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAG
66 CCACCCATCACAGTCCCACCAGTGACCCTCCCAGTCCCTCCAG
* *
13863731 TTACTGTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
1 TTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
13863796 CCACCCATCACAGTCCCACCAGTGAC
66 CCACCCATCACAGTCCCACCAGTGAC
13863822 TGTTCCTCCT
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
108 86 1.00
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.22
Consensus pattern (108 bp):
TTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
CCACCCATCACAGTCCCACCAGTGACCCTCCCAGTCCCTCCAG
Found at i:13863769 original size:180 final size:180
Alignment explanation
Indices: 13863562--13863890 Score: 613
Period size: 180 Copynumber: 1.8 Consensus size: 180
13863552 TACAGTTCCA
* * * *
13863562 CCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAAGCCACCCATTAC
1 CCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
*
13863627 AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCGC
66 AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCAC
13863692 CCATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTTACTGTCCCT
131 CCATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTTACTGTCCCT
13863742 CCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
1 CCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
13863807 AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCAC
66 AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCAC
13863872 CCATCACAGTCCCTCCAGT
131 CCATCACAGTCCCTCCAGT
13863891 AACTGTCCCT
Statistics
Matches: 144, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
180 144 1.00
ACGTcount: A:0.23, C:0.40, G:0.15, T:0.22
Consensus pattern (180 bp):
CCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCAC
AGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCAC
CCATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTTACTGTCCCT
Found at i:13863822 original size:72 final size:72
Alignment explanation
Indices: 13863736--13863902 Score: 298
Period size: 72 Copynumber: 2.3 Consensus size: 72
13863726 TCCAGTTACT
13863736 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
13863801 CATCACA
66 CATCACA
* *
13863808 GTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
13863873 CATCACA
66 CATCACA
* *
13863880 GTCCCTCCAGTAACTGTCCCTCC
1 GTCCCTCCAGTGACTGTTCCTCC
13863903 AGTGACTGTT
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 90 1.00
ACGTcount: A:0.23, C:0.41, G:0.13, T:0.22
Consensus pattern (72 bp):
GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
CATCACA
Found at i:13863900 original size:15 final size:15
Alignment explanation
Indices: 13863880--13863922 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
13863870 ACCCATCACA
13863880 GTCCCTCCAGTAACT
1 GTCCCTCCAGTAACT
*
13863895 GTCCCTCCAGTGACT
1 GTCCCTCCAGTAACT
* *
13863910 GTTCCTCCCGTAA
1 GTCCCTCCAGTAA
13863923 AGCCACCAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.16, C:0.40, G:0.16, T:0.28
Consensus pattern (15 bp):
GTCCCTCCAGTAACT
Found at i:13863954 original size:87 final size:87
Alignment explanation
Indices: 13863808--13863987 Score: 297
Period size: 87 Copynumber: 2.1 Consensus size: 87
13863798 ACCCATCACA
* *
13863808 GTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCACCAGTGACTGTTCCTCCCGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
* *
13863873 CATCACAGTCCCTCCAGTAACT
66 CATCACAGTCCCACCAGTAACC
*
13863895 GTCCCTCCAGTGACTGTTCCTCCCGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCACCAGTGACTGTTCCTCCCGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
* *
13863960 CATCGCAGTCCCACCAGTGACC
66 CATCACAGTCCCACCAGTAACC
13863982 GTCCCA
1 GTCCCA
13863988 GTCCCACCAG
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 85 1.00
ACGTcount: A:0.23, C:0.42, G:0.14, T:0.21
Consensus pattern (87 bp):
GTCCCACCAGTGACTGTTCCTCCCGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
CATCACAGTCCCACCAGTAACC
Found at i:13866298 original size:13 final size:13
Alignment explanation
Indices: 13866280--13866304 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13866270 TTTACCATCG
13866280 ATTTACTTTACCA
1 ATTTACTTTACCA
13866293 ATTTACTTTACC
1 ATTTACTTTACC
13866305 CTGACGGATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTTACTTTACCA
Found at i:13868920 original size:17 final size:18
Alignment explanation
Indices: 13868890--13868923 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
13868880 ATACTCCAGG
13868890 TATACATTTGAAAATATA
1 TATACATTTGAAAATATA
*
13868908 TATA-ATTTTAAAATAT
1 TATACATTTGAAAATAT
13868924 TAAAATATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
TATACATTTGAAAATATA
Found at i:13875469 original size:3 final size:3
Alignment explanation
Indices: 13875455--13875486 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
13875445 GGATGATAAA
*
13875455 ATG ATT ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
13875487 AAAAGCTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.28, T:0.38
Consensus pattern (3 bp):
ATG
Found at i:13876936 original size:42 final size:43
Alignment explanation
Indices: 13876876--13876963 Score: 169
Period size: 42 Copynumber: 2.1 Consensus size: 43
13876866 TAGTAAGCAA
13876876 ATTATTTTTTTTAAATGAGAAATGCTTGTATTTATGATTTAAT
1 ATTATTTTTTTTAAATGAGAAATGCTTGTATTTATGATTTAAT
13876919 ATTA-TTTTTTTAAATGAGAAATGCTTGTATTTATGATTTAAT
1 ATTATTTTTTTTAAATGAGAAATGCTTGTATTTATGATTTAAT
13876961 ATT
1 ATT
13876964 TTCTTATAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 41 0.91
43 4 0.09
ACGTcount: A:0.33, C:0.02, G:0.11, T:0.53
Consensus pattern (43 bp):
ATTATTTTTTTTAAATGAGAAATGCTTGTATTTATGATTTAAT
Found at i:13876951 original size:21 final size:21
Alignment explanation
Indices: 13876885--13876951 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
13876875 AATTATTTTT
13876885 TTTAAATGAGAAATGCTTGTA
1 TTTAAATGAGAAATGCTTGTA
* ** *
13876906 TTT--ATGATTTAATATTATT-TT
1 TTTAAATGA--GAA-ATGCTTGTA
13876927 TTTAAATGAGAAATGCTTGTA
1 TTTAAATGAGAAATGCTTGTA
13876948 TTTA
1 TTTA
13876952 TGATTTAATA
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
19 4 0.12
20 4 0.12
21 16 0.50
22 4 0.12
23 4 0.12
ACGTcount: A:0.34, C:0.03, G:0.13, T:0.49
Consensus pattern (21 bp):
TTTAAATGAGAAATGCTTGTA
Found at i:13883611 original size:18 final size:17
Alignment explanation
Indices: 13883578--13883625 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 17
13883568 AAATATATTG
*
13883578 TTTAACAATATTTTTAT
1 TTTAAAAATATTTTTAT
13883595 TTTAAAAATACTTTTTAT
1 TTTAAAAATA-TTTTTAT
* *
13883613 CTCAAAAATATTT
1 TTTAAAAATATTT
13883626 CTTAAAAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTAAAAATATTTTTAT
Found at i:13893101 original size:12 final size:12
Alignment explanation
Indices: 13893084--13893111 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
13893074 TACATATATG
13893084 TACACACATACA
1 TACACACATACA
13893096 TACACACATACA
1 TACACACATACA
13893108 TACA
1 TACA
13893112 GCTAAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (12 bp):
TACACACATACA
Found at i:13899979 original size:18 final size:17
Alignment explanation
Indices: 13899958--13899991 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
13899948 ACAAATGATC
*
13899958 TCAAATTTCAAAATTCAT
1 TCAAAGTTC-AAATTCAT
13899976 TCAAAGTTCAAATTCA
1 TCAAAGTTCAAATTCA
13899992 GTGAGTGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.35
Consensus pattern (17 bp):
TCAAAGTTCAAATTCAT
Found at i:13902448 original size:25 final size:26
Alignment explanation
Indices: 13902420--13902468 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
13902410 TTTAATATTA
*
13902420 TTTTCTATATTATCTTTTT-GTATCG
1 TTTTATATATTATCTTTTTCGTATCG
* *
13902445 TTTTATATTTTATTTTTTTCGTAT
1 TTTTATATATTATCTTTTTCGTAT
13902469 TATATTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.16, C:0.08, G:0.06, T:0.69
Consensus pattern (26 bp):
TTTTATATATTATCTTTTTCGTATCG
Found at i:13904439 original size:12 final size:12
Alignment explanation
Indices: 13904422--13904464 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
13904412 TGCGTATTAC
13904422 AATTGCTAGTGT
1 AATTGCTAGTGT
* **
13904434 AATTGCGTATTAC
1 AATTGC-TAGTGT
13904447 AATTGCTAGTGT
1 AATTGCTAGTGT
13904459 AATTGC
1 AATTGC
13904465 AGCGACTTTG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
12 15 0.62
13 9 0.38
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.40
Consensus pattern (12 bp):
AATTGCTAGTGT
Found at i:13904446 original size:25 final size:25
Alignment explanation
Indices: 13904412--13904464 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
13904402 TCAAGAGAAA
13904412 TGCGTATTACAATTGCTAGTGTAAT
1 TGCGTATTACAATTGCTAGTGTAAT
13904437 TGCGTATTACAATTGCTAGTGTAAT
1 TGCGTATTACAATTGCTAGTGTAAT
13904462 TGC
1 TGC
13904465 AGCGACTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (25 bp):
TGCGTATTACAATTGCTAGTGTAAT
Found at i:13907737 original size:43 final size:44
Alignment explanation
Indices: 13907676--13907774 Score: 141
Period size: 43 Copynumber: 2.3 Consensus size: 44
13907666 ATCCTAATTG
* * *
13907676 AGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-
1 AGAAAATAGTTTCTTTATTCTAATAAACTACTAAAAAATAAAAT
*
13907719 AGAAAATAGTTTCTTTATTCTAGTAAACTACTAAAAAATAAAAT
1 AGAAAATAGTTTCTTTATTCTAATAAACTACTAAAAAATAAAAT
13907763 A-AAAATA-TTTCT
1 AGAAAATAGTTTCT
13907775 AGAATATGAA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 5 0.10
43 45 0.88
44 1 0.02
ACGTcount: A:0.51, C:0.12, G:0.05, T:0.32
Consensus pattern (44 bp):
AGAAAATAGTTTCTTTATTCTAATAAACTACTAAAAAATAAAAT
Found at i:13907813 original size:19 final size:18
Alignment explanation
Indices: 13907791--13907830 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
13907781 TGAATAAAAC
13907791 TTATCTATCC-AAATAAGAT
1 TTATCTA-CCTAAATAA-AT
13907810 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
13907828 TTA
1 TTA
13907831 AAATATATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:13910519 original size:57 final size:57
Alignment explanation
Indices: 13910431--13910542 Score: 206
Period size: 57 Copynumber: 2.0 Consensus size: 57
13910421 TTTAACTTCA
* *
13910431 GACTTATCTTTTAATAAAAACGCCCAACAAAGTTGAGTATGATCATCAATAAATGCG
1 GACTTATCTTTTAATAAAAACACCCAACAAAGTCGAGTATGATCATCAATAAATGCG
13910488 GACTTATCTTTTAATAAAAACACCCAACAAAGTCGAGTATGATCATCAATAAATG
1 GACTTATCTTTTAATAAAAACACCCAACAAAGTCGAGTATGATCATCAATAAATG
13910543 TGACAAACCA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (57 bp):
GACTTATCTTTTAATAAAAACACCCAACAAAGTCGAGTATGATCATCAATAAATGCG
Found at i:13910819 original size:83 final size:83
Alignment explanation
Indices: 13910680--13910844 Score: 321
Period size: 83 Copynumber: 2.0 Consensus size: 83
13910670 CAATTCACAA
13910680 AATTCACAATGATATGAAGAAGGACTTTTATTTTTAAATAGATTAGGTAACAAATATCTTAAACA
1 AATTCACAATGATATGAAGAAGGACTTTTATTTTTAAATAGATTAGGTAACAAATATCTTAAACA
13910745 ATAAAAATTAGGATGTCT
66 ATAAAAATTAGGATGTCT
*
13910763 AATTCACAATGATATGAAGAAGGACTTTTATTTTTAAATAGATTAGGTAACAAATATCTTAAATA
1 AATTCACAATGATATGAAGAAGGACTTTTATTTTTAAATAGATTAGGTAACAAATATCTTAAACA
13910828 ATAAAAATTAGGATGTC
66 ATAAAAATTAGGATGTC
13910845 CAAGCCTATA
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 81 1.00
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (83 bp):
AATTCACAATGATATGAAGAAGGACTTTTATTTTTAAATAGATTAGGTAACAAATATCTTAAACA
ATAAAAATTAGGATGTCT
Found at i:13912618 original size:43 final size:44
Alignment explanation
Indices: 13912557--13912649 Score: 154
Period size: 43 Copynumber: 2.2 Consensus size: 44
13912547 TCCTAATTGG
13912557 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAA-A
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
* *
13912600 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAATA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
13912644 -AAAATA
1 GAAAATA
13912650 TTTCTAGAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.06, T:0.28
Consensus pattern (44 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAATA
Found at i:13919430 original size:32 final size:30
Alignment explanation
Indices: 13919385--13919445 Score: 77
Period size: 32 Copynumber: 2.0 Consensus size: 30
13919375 CTCAAATTTT
* *
13919385 AAAAAAATTAATAATATAATGATTTAAATA
1 AAAAAAATTAATAATATAAGGACTTAAATA
*
13919415 AAAAAAATTTAAATAATTTAAGGACTTAAAT
1 AAAAAAA-TT-AATAATATAAGGACTTAAAT
13919446 CAATATTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 7 0.27
31 2 0.08
32 17 0.65
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (30 bp):
AAAAAAATTAATAATATAAGGACTTAAATA
Found at i:13922594 original size:183 final size:183
Alignment explanation
Indices: 13922284--13922701 Score: 800
Period size: 183 Copynumber: 2.3 Consensus size: 183
13922274 CTGAAATTCC
13922284 CAACAAAGAAAAATCAATAACCTAAAACTACCCAAAGAACATATAAAGCTCCTTCAAGGATTTAA
1 CAACAAAGAAAAATCAATAACCTAAAACTACCCAAAGAACATATAAAGCTCCTTCAAGGATTTAA
*
13922349 TCCAATTCTCAAATCATATATTCAAAGCTAACCCTAAGCTAAAACAAAAAGAACCTGTAGCTCAA
66 TCCAATTCTCAAATCATATATTCAAAGCTAACCCTAAGCTAAAACAAAAAGAACCCGTAGCTCAA
13922414 AATCAAAACCATGTCTCCTCAGTGAGACATAACATCAAACACATCAACTACAA
131 AATCAAAACCATGTCTCCTCAGTGAGACATAACATCAAACACATCAACTACAA
13922467 CAACAAAGAAAAATCAATAACCTAAAACTACCCAAAGAACATATAAAGCTCCTTCAAGGATTTAA
1 CAACAAAGAAAAATCAATAACCTAAAACTACCCAAAGAACATATAAAGCTCCTTCAAGGATTTAA
13922532 TCCAATTCTCAAATCATATATTCAAAGCTAACCCTAAGCTAAAACAAAAAGAACCCGTAGCTCAA
66 TCCAATTCTCAAATCATATATTCAAAGCTAACCCTAAGCTAAAACAAAAAGAACCCGTAGCTCAA
13922597 AATCAAAACCATGTCTCCTCAGTGAGACATAACATCAAACACATCAACTACAA
131 AATCAAAACCATGTCTCCTCAGTGAGACATAACATCAAACACATCAACTACAA
* * *
13922650 CAACAAAGAACAATCAATAACCTAAAACTACCCAAAGATCATACAAAGCTCC
1 CAACAAAGAAAAATCAATAACCTAAAACTACCCAAAGAACATATAAAGCTCC
13922702 ATAAAATTTC
Statistics
Matches: 231, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 231 1.00
ACGTcount: A:0.48, C:0.25, G:0.07, T:0.19
Consensus pattern (183 bp):
CAACAAAGAAAAATCAATAACCTAAAACTACCCAAAGAACATATAAAGCTCCTTCAAGGATTTAA
TCCAATTCTCAAATCATATATTCAAAGCTAACCCTAAGCTAAAACAAAAAGAACCCGTAGCTCAA
AATCAAAACCATGTCTCCTCAGTGAGACATAACATCAAACACATCAACTACAA
Found at i:13931419 original size:17 final size:17
Alignment explanation
Indices: 13931380--13931427 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
13931370 TATCAAATTG
*
13931380 AGTTATTTAGA-TTTAG
1 AGTTATTTAGAGTTTAA
*
13931396 A-TTATTTCGAGTTTAA
1 AGTTATTTAGAGTTTAA
*
13931412 AGTTATTTTGAGTTTA
1 AGTTATTTAGAGTTTA
13931428 GGTTATTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 8 0.30
16 6 0.22
17 13 0.48
ACGTcount: A:0.29, C:0.02, G:0.17, T:0.52
Consensus pattern (17 bp):
AGTTATTTAGAGTTTAA
Found at i:13931434 original size:16 final size:16
Alignment explanation
Indices: 13931381--13931437 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
13931371 ATCAAATTGA
*
13931381 GTTATTTAGA-TTTAG
1 GTTATTTTGAGTTTAG
* * *
13931396 ATTATTTCGAGTTTAAA
1 GTTATTTTGAGTTT-AG
13931413 GTTATTTTGAGTTTAG
1 GTTATTTTGAGTTTAG
13931429 GTTATTTTG
1 GTTATTTTG
13931438 GGTCAAGTAG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
15 8 0.24
16 13 0.38
17 13 0.38
ACGTcount: A:0.25, C:0.02, G:0.19, T:0.54
Consensus pattern (16 bp):
GTTATTTTGAGTTTAG
Done.