Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 43 of 203
Found at i:14255240 original size:24 final size:23
Alignment explanation
Indices: 14255207--14255276 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 23
14255197 TGCGCACAAA
14255207 TGAAAGTGGCACTTCGATGCAAT
1 TGAAAGTGGCACTTCGATGCAAT
*
14255230 TGAAATGTGGCACTTCTG-TGCAAA
1 TGAAA-GTGGCACTTC-GATGCAAT
*
14255254 TGAAAGTGACACTTCGATGCAAT
1 TGAAAGTGGCACTTCGATGCAAT
14255277 AGTATAACTG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
22 1 0.02
23 19 0.46
24 20 0.49
25 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (23 bp):
TGAAAGTGGCACTTCGATGCAAT
Found at i:14255274 original size:23 final size:23
Alignment explanation
Indices: 14255203--14255275 Score: 103
Period size: 23 Copynumber: 3.1 Consensus size: 23
14255193 CCTATGCGCA
14255203 CAAATGAAAGTGGCACTTCGATG
1 CAAATGAAAGTGGCACTTCGATG
*
14255226 CAATTGAAATGTGGCACTTCTG-TG
1 CAAATGAAA-GTGGCACTTC-GATG
*
14255250 CAAATGAAAGTGACACTTCGATG
1 CAAATGAAAGTGGCACTTCGATG
14255273 CAA
1 CAA
14255276 TAGTATAACT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
22 1 0.02
23 22 0.50
24 20 0.45
25 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (23 bp):
CAAATGAAAGTGGCACTTCGATG
Found at i:14256509 original size:34 final size:33
Alignment explanation
Indices: 14256455--14256519 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
14256445 CCAAATCCTA
*
14256455 TTTTCATGAAAAAAATAAAAAAATATAGAAATT
1 TTTTCATGAAAAAAACAAAAAAATATAGAAATT
* *
14256488 TTTTCTATTAAAAAAACAAAAAAATTTAGAAA
1 TTTTC-ATGAAAAAAACAAAAAAATATAGAAA
14256520 ATAAAAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 5 0.18
34 23 0.82
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.31
Consensus pattern (33 bp):
TTTTCATGAAAAAAACAAAAAAATATAGAAATT
Found at i:14269601 original size:3 final size:3
Alignment explanation
Indices: 14269593--14269621 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14269583 ATGGAAATTA
14269593 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
14269622 GTTAGACTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:14276206 original size:13 final size:13
Alignment explanation
Indices: 14276188--14276226 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
14276178 TATTATATTA
*
14276188 AAATAAAATAAAT
1 AAATAAAAGAAAT
*
14276201 AAATAAAAGAAAG
1 AAATAAAAGAAAT
14276214 AAA-AAAAGAAAT
1 AAATAAAAGAAAT
14276226 A
1 A
14276227 GAAAAAGAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 9 0.39
13 14 0.61
ACGTcount: A:0.79, C:0.00, G:0.08, T:0.13
Consensus pattern (13 bp):
AAATAAAAGAAAT
Found at i:14276222 original size:12 final size:12
Alignment explanation
Indices: 14276205--14276284 Score: 63
Period size: 12 Copynumber: 6.4 Consensus size: 12
14276195 ATAAATAAAT
14276205 AAAAGAAAGAAA
1 AAAAGAAAGAAA
14276217 AAAAGAAATAGAAA
1 AAAAG-AA-AGAAA
* *
14276231 AAGAGACAAAGCAA
1 AA-A-AGAAAGAAA
* * *
14276245 AAATGAAA-CAG
1 AAAAGAAAGAAA
14276256 AAAAGAAAGAAA
1 AAAAGAAAGAAA
*
14276268 GAAAGAAAGAAA
1 AAAAGAAAGAAA
14276280 AAAAG
1 AAAAG
14276285 GGAGAAAGAA
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
11 9 0.17
12 24 0.45
13 3 0.06
14 13 0.25
15 3 0.06
16 1 0.02
ACGTcount: A:0.75, C:0.04, G:0.19, T:0.03
Consensus pattern (12 bp):
AAAAGAAAGAAA
Found at i:14278012 original size:21 final size:21
Alignment explanation
Indices: 14277968--14278012 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
14277958 TTGAATTAGG
* * *
14277968 AATGATTTAAAATGATGTTTT
1 AATGATATAAAATGATGATAT
*
14277989 AATGATATGAAATGATGATAT
1 AATGATATAAAATGATGATAT
14278010 AAT
1 AAT
14278013 TGTGGTACCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (21 bp):
AATGATATAAAATGATGATAT
Found at i:14282057 original size:49 final size:50
Alignment explanation
Indices: 14282004--14282105 Score: 179
Period size: 49 Copynumber: 2.1 Consensus size: 50
14281994 CTTTAGGTTT
*
14282004 TATTATATATATTATTACATTGAAGGAGA-GGAATCACAACTACCATAAC
1 TATTATATATATTATTACATTGAAGGAGAGGGAAGCACAACTACCATAAC
*
14282053 TATTATATATATTATTACATTGAAGGGGAGGGAAGCACAACTACCATAAC
1 TATTATATATATTATTACATTGAAGGAGAGGGAAGCACAACTACCATAAC
14282103 TAT
1 TAT
14282106 GGTTGTTTTA
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 28 0.56
50 22 0.44
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (50 bp):
TATTATATATATTATTACATTGAAGGAGAGGGAAGCACAACTACCATAAC
Found at i:14283942 original size:28 final size:27
Alignment explanation
Indices: 14283887--14283954 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
14283877 AAAATAAGGA
*
14283887 TTTAAAAATAAATATAAATAATGTTAT
1 TTTAAAAATAAATATAAATAATATTAT
*
14283914 TTTAAAAATAAATATAAATTATAATTAT
1 TTTAAAAATAAATATAAATAAT-ATTAT
**
14283942 TAAAAAAATAAAT
1 TTTAAAAATAAAT
14283955 TCAAAAACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 21 0.58
28 15 0.42
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (27 bp):
TTTAAAAATAAATATAAATAATATTAT
Found at i:14292855 original size:15 final size:15
Alignment explanation
Indices: 14292813--14292856 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
14292803 AAGTGCCGGA
*
14292813 GGAGGTGGAGGGGGC
1 GGAGGTGGAGGAGGC
*
14292828 GGAGGTGGGGGAGGC
1 GGAGGTGGAGGAGGC
*
14292843 GGAGGCGGAGGAGG
1 GGAGGTGGAGGAGG
14292857 AGGTGGACGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.16, C:0.07, G:0.73, T:0.05
Consensus pattern (15 bp):
GGAGGTGGAGGAGGC
Found at i:14298182 original size:14 final size:15
Alignment explanation
Indices: 14298163--14298209 Score: 62
Period size: 14 Copynumber: 3.2 Consensus size: 15
14298153 ACTAATAATT
14298163 AAAATT-AAATTTTA
1 AAAATTAAAATTTTA
*
14298177 AAAATTGAAA-TTTA
1 AAAATTAAAATTTTA
14298191 AAAATTAAAAATTTTA
1 AAAATT-AAAATTTTA
14298207 AAA
1 AAA
14298210 TAAAAAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 16 0.55
15 6 0.21
16 7 0.24
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (15 bp):
AAAATTAAAATTTTA
Found at i:14298210 original size:15 final size:14
Alignment explanation
Indices: 14298161--14298214 Score: 58
Period size: 15 Copynumber: 3.9 Consensus size: 14
14298151 ATACTAATAA
14298161 TTAAAATT-AAATT
1 TTAAAATTAAAATT
*
14298174 TTAAAAATTGAAATT
1 TT-AAAATTAAAATT
*
14298189 TAAAAATTAAAAATT
1 TTAAAATT-AAAATT
14298204 TTAAAA-TAAAA
1 TTAAAATTAAAA
14298215 AAAAATTCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
13 6 0.17
14 13 0.37
15 16 0.46
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (14 bp):
TTAAAATTAAAATT
Found at i:14299659 original size:13 final size:13
Alignment explanation
Indices: 14299636--14299669 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14299626 AACCACTTTT
*
14299636 TTATATTAAAATA
1 TTATTTTAAAATA
*
14299649 TTTTTTTAAAATA
1 TTATTTTAAAATA
14299662 TTATTTTA
1 TTATTTTA
14299670 TTGGCGGCGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TTATTTTAAAATA
Found at i:14299823 original size:27 final size:27
Alignment explanation
Indices: 14299769--14299825 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
14299759 GTATGAGGTA
* **
14299769 GGTGGAGCCTATCTGACAGGTGCAACT
1 GGTGGAGCCTATCTGACAAGCACAACT
*
14299796 GGTGGAGCCTATCTGACAAGCACGACT
1 GGTGGAGCCTATCTGACAAGCACAACT
14299823 GGT
1 GGT
14299826 TGAACAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.21
Consensus pattern (27 bp):
GGTGGAGCCTATCTGACAAGCACAACT
Found at i:14300043 original size:60 final size:60
Alignment explanation
Indices: 14299968--14300086 Score: 193
Period size: 60 Copynumber: 2.0 Consensus size: 60
14299958 ATACTAAACT
* *
14299968 AAACACAACAATTTATAACATAATCCTAAATTACTAATAAAATAATTTTAAAATAATTAC
1 AAACACAACAATTTATAACATAATACTAAATTACTAACAAAATAATTTTAAAATAATTAC
* * *
14300028 AAACACAACAGTTTATAACATAATATTAAATTACTAACAAATTAATTTTAAAATAATTA
1 AAACACAACAATTTATAACATAATACTAAATTACTAACAAAATAATTTTAAAATAATTA
14300087 TAAAAAATAA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.55, C:0.12, G:0.01, T:0.33
Consensus pattern (60 bp):
AAACACAACAATTTATAACATAATACTAAATTACTAACAAAATAATTTTAAAATAATTAC
Found at i:14300347 original size:25 final size:24
Alignment explanation
Indices: 14300303--14300352 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
14300293 TATATATTTA
14300303 AATATTTTAATAAAAATAAAATAAT
1 AATATTTTAATAAAAATAAAA-AAT
* * *
14300328 AATATTTTATTTAAACTAAAAAAT
1 AATATTTTAATAAAAATAAAAAAT
14300352 A
1 A
14300353 TTTTAATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
AATATTTTAATAAAAATAAAAAAT
Found at i:14302521 original size:21 final size:22
Alignment explanation
Indices: 14302495--14302539 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
14302485 TACCTAAATT
* *
14302495 AATAAAAAAGATAAG-TTGCTA
1 AATAAAAAAAATAAGATTCCTA
14302516 AATAAAAAAAATAAGATTCCTA
1 AATAAAAAAAATAAGATTCCTA
14302538 AA
1 AA
14302540 ACGATGAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.62, C:0.07, G:0.09, T:0.22
Consensus pattern (22 bp):
AATAAAAAAAATAAGATTCCTA
Found at i:14310071 original size:16 final size:16
Alignment explanation
Indices: 14310050--14310099 Score: 82
Period size: 16 Copynumber: 3.1 Consensus size: 16
14310040 TGGTTCGCTA
14310050 TATTGGATTAGAGGTG
1 TATTGGATTAGAGGTG
14310066 TATTGGATTAGAGGTG
1 TATTGGATTAGAGGTG
* *
14310082 TAATGGAATAGAGGTG
1 TATTGGATTAGAGGTG
14310098 TA
1 TA
14310100 ATAGCAAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.34
Consensus pattern (16 bp):
TATTGGATTAGAGGTG
Found at i:14310146 original size:45 final size:44
Alignment explanation
Indices: 14310080--14310174 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
14310070 GGATTAGAGG
*
14310080 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
14310125 TGTAATGGAATAGAGGCGTAATAGTAATCCTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
14310169 TGTAAT
1 TGTAAT
14310175 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 22 0.49
45 23 0.51
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:14310355 original size:18 final size:17
Alignment explanation
Indices: 14310334--14310368 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14310324 TTATTATTAA
*
14310334 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
14310352 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
14310369 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:14329322 original size:21 final size:21
Alignment explanation
Indices: 14329296--14329336 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
14329286 AGACGAGCAA
* *
14329296 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
14329317 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
14329337 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:14335047 original size:3 final size:3
Alignment explanation
Indices: 14335039--14335131 Score: 57
Period size: 3 Copynumber: 31.3 Consensus size: 3
14335029 ATACATGGTT
* * * * * *
14335039 ATA ATA ATA ATT ATT ATT ATA TTA ATA ATA GTA ATA ATA ATA AAA AT-
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
14335086 ATA ATA ATA ATG ATGCA AT- ATA ACA ATA TTA ATA ATA TTA A-A ATA
1 ATA ATA ATA ATA AT--A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14335131 A
1 A
14335132 AAAAAAACCT
Statistics
Matches: 69, Mismatches: 16, Indels: 10
0.73 0.17 0.11
Matches are distributed among these distances:
2 6 0.09
3 61 0.88
5 2 0.03
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (3 bp):
ATA
Found at i:14336459 original size:44 final size:44
Alignment explanation
Indices: 14336447--14336562 Score: 232
Period size: 44 Copynumber: 2.6 Consensus size: 44
14336437 TGGTTTTAGT
14336447 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCTAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCTAC
14336491 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCTAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCTAC
14336535 CTGCTCCACTGCAACTTCAGGGAGATAA
1 CTGCTCCACTGCAACTTCAGGGAGATAA
14336563 TGTTTGATAT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 72 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCTAC
Found at i:14336472 original size:88 final size:88
Alignment explanation
Indices: 14336363--14336562 Score: 228
Period size: 88 Copynumber: 2.3 Consensus size: 88
14336353 CTTCGATCTA
* * ** *
14336363 CTCCACTGC-ACTTCAGAGAGATACGACTTGTAGCTTCAATCC-ACTCTGCTGCAACTTCAGGGG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTCAA-CCTACTCCACTGCAACTTCAGGGA
* * * *
14336426 GACGAGA-TTG-ATGGTTTTAGTCTG
65 GACAAGACTTGTAT-CTTCTA-CCTG
* * *
14336450 CTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTCTACCTGCTCCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTCAACCTACTCCACTGCAACTTCAGGGAG
*
14336515 ATAAGACTTGTATCTTCTACCTG
66 ACAAGACTTGTATCTTCTACCTG
14336538 CTCCACTGCAACTTCAGGGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAA
14336563 TGTTTGATAT
Statistics
Matches: 96, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
87 11 0.11
88 76 0.79
89 7 0.07
90 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (88 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTTGTAGCTTCAACCTACTCCACTGCAACTTCAGGGAG
ACAAGACTTGTATCTTCTACCTG
Found at i:14336738 original size:44 final size:44
Alignment explanation
Indices: 14336641--14336726 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
14336631 CGCTCTATTG
* * *
14336641 CAACTTCAGGGAGATAGGATTAGTAGCTTCAGTCTGCTCCACTA
1 CAACTTCAGGGAGATAAGACTAGTAGCTTCAGTCTGCCCCACTA
* * *
14336685 TAACTTCAGGGAGATAAGACTCGCTATCTTCAGTCTGCCCCA
1 CAACTTCAGGGAGATAAGACTAG-TAGCTTCAGTCTGCCCCA
14336727 TGCCACTTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
44 19 0.54
45 16 0.46
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGACTAGTAGCTTCAGTCTGCCCCACTA
Found at i:14336977 original size:100 final size:100
Alignment explanation
Indices: 14336848--14337359 Score: 657
Period size: 100 Copynumber: 5.1 Consensus size: 100
14336838 GATTCGCTAT
* * * * * *
14336848 CTTCAGTCTAATTAACTGTAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
1 CTTCAATCTATTTAATTGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCA
* *
14336913 CTGCACTGCCAGGGAAGTAAGATTTGCCATTGTGG
66 CTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTGG
* * ** * *
14336948 CTTCAATCTTTTTAATTGTAATGTCGGGGAAGTAAGATTCGTCGTTGTACCTTCAATCTGTTCCA
1 CTTCAATCTATTTAATTGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCA
* * *
14337013 CTGCACCGCCAGGGAAGTAAGATTCACCATTGTGG
66 CTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTGG
* ** * *
14337048 CTTCAATCTTTTTAATTGCAATGTCAAGGAAACAAGATTCACCGTTGTAACTTCAATCTGTTCCA
1 CTTCAATCTATTTAATTGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCA
*
14337113 CTGCA-TCGCCAGTGAAGTAAGATTCGCCGTTGTGG
66 CTGCACT-GCCAGGGAAGTAAGATTCGCCGTTGTGG
* * * *
14337148 CTTCAATCTATTTAATTACAATGTCGGGGAAACAAGATTCACCGTCGTAGCTTCAATCTATTCCA
1 CTTCAATCTATTTAATTGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCA
* * **
14337213 CTACACCGCCAGGGAAGTAAGATTCATCGTTGTGG
66 CTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTGG
* * *
14337248 CTTCAATCTATTTAATTGCAATGTCGGGGAAATAAGATTTGCCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTATTTAATTGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCA
* * * * *
14337313 CTACACTGCTAGGGAAGTAAGATTTGACGTTTTGG
66 CTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTGG
14337348 CTTCAATCTATT
1 CTTCAATCTATT
14337360 CCACTGTAAT
Statistics
Matches: 364, Mismatches: 46, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
100 364 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (100 bp):
CTTCAATCTATTTAATTGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGCTTCAATCTGTTCCA
CTGCACTGCCAGGGAAGTAAGATTCGCCGTTGTGG
Found at i:14337328 original size:50 final size:50
Alignment explanation
Indices: 14336874--14337371 Score: 313
Period size: 50 Copynumber: 10.0 Consensus size: 50
14336864 TGTAATGTCG
* * * * *
14336874 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAATGCTA
* * * * ** * * *
14336924 GGGAAGTAAGATTTGCCATTGTGGCTTCAATCTTTTTAATTGTAATG-TCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAATGCT-A
* * * ** *
14336974 GGGAAGTAAGATTCGTCGTTGTACCTTCAATCTGTTCCACTGCACCGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAATGCTA
* * * * ** *
14337024 GGGAAGTAAGATTCACCATTGTGGCTTCAATCTTTTTAATTGCAATG-TCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAATGCT-A
* ** * * * *
14337074 AGGAAACAAGATTCACCGTTGTAACTTCAATCTGTTCCACTGC-ATCGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAAT-GCTA
* * ** * * *
14337124 GTGAAGTAAGATTCGCCGTTGTGGCTTCAATCTATTTAATTACAATG-TCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAATGCT-A
** * * * ** *
14337174 GGGAAACAAGATTCACCGTCGTAGCTTCAATCTATTCCACTACACCGCCA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAATGCTA
** * ** * *
14337224 GGGAAGTAAGATTCATCGTTGTGGCTTCAATCTATTTAATTGCAATG-TCG
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAATGCT-A
* * * * * *
14337274 GGGAAATAAGATTTGCCGTCGTAGCTTCAATCTGTTCCACTACACTGCTA
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAATGCTA
* * * * *
14337324 GGGAAGTAAGATTTGACGTTTTGGCTTCAATCTATTCCACTGTAATGC
1 GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAATGC
14337372 CAAAGAGATA
Statistics
Matches: 326, Mismatches: 112, Indels: 20
0.71 0.24 0.04
Matches are distributed among these distances:
49 2 0.01
50 321 0.98
51 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (50 bp):
GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGCAATGCTA
Found at i:14337798 original size:252 final size:256
Alignment explanation
Indices: 14337181--14338044 Score: 932
Period size: 252 Copynumber: 3.3 Consensus size: 256
14337171 TCGGGGAAAC
* * ** * * * **
14337181 AAGATTCACCGTCGTAGCTTCAATCTATTCCACTACACCGCCAGGGAAGTAAGATTCATCGTTGT
1 AAGATTCACCATCGTGGCTTCAATCTGCTCCGCTGCAACGCC-GGGAAGTAAGATTCGCCGTTGT
* * ** * * *
14337246 GGCTTCAATCTATTTAATTGCAATGTCGGGGAAATAAGATTTGCCGTCGTAGCTTCAATCTGTTC
65 GGCTTCAATCTATTTAACTGAAATGTCGGGGAAACGAGATTCGTCGTCGTAGCTTCAATCTGGTC
* ** * * ** *
14337311 CACTACACTGCTAGGGAAGTAAGATTTGACGTTTTGGCTTCAATCTATTCCACTGTAATGCCAAA
130 CCCTACAC--C---GCCA-T-A-A-CT-CCGTCATGGCTTCAATCCATTCCACTGTAATGCCAAA
* * *
14337376 GAGATAGGATTCGCTGTCTACAGCCTTAATCCGCTCCACTTTAGCTAATCTAAGTCTTAACGCCA
185 GAGATAGGATTCGCTGCCCACAGCCTTAATCCGCTCCACTTTAGCTAATCCAAGTCTTAACGCCA
14337441 GGGAGAT
250 GGGAGAT
*
14337448 AAGATTCACCATCGTGGCTTCAATCTGCTCCGCTGCAACGCCGGGGAAGTAAGATTCGTCGTTGT
1 AAGATTCACCATCGTGGCTTCAATCTGCTCCGCTGCAACGCC-GGGAAGTAAGATTCGCCGTTGT
* * * *
14337513 GGCTTTAATCTATTTAACTGAAATGTTGGGGAAACGAGATTCG-CTGTTGTGGCTTCAATCTGGT
65 GGCTTCAATCTATTTAACTGAAATGTCGGGGAAACGAGATTCGTC-GTCGTAGCTTCAATCTGGT
14337577 CCCCTACACCG-C-T-A-T-CGTCATGGCTTCAATCCATTCCACTGTAATGCCAAAGAGATAGGA
129 CCCCTACACCGCCATAACTCCGTCATGGCTTCAATCCATTCCACTGTAATGCCAAAGAGATAGGA
* * * *
14337637 TTTGCTGCCCACAGCCTTAATCCGCTCCACTTTAGCTAATCCAAGTCTTAATGCGAGGAAGAT
194 TTCGCTGCCCACAGCCTTAATCCGCTCCACTTTAGCTAATCCAAGTCTTAACGCCAGGGAGAT
* * * *
14337700 AAGATTCACCGTCGTGGCTTCAATCTGCTCCGTTGCAATGCCGGAGAAGTAAGATTTGCCGTTGT
1 AAGATTCACCATCGTGGCTTCAATCTGCTCCGCTGCAACGCCGG-GAAGTAAGATTCGCCGTTGT
* *
14337765 GGCTTCAATCTATTTAACTGTAATGTCGGGGAAACGAGATTCGTCGTCGTAGCTTTAATCTGGTC
65 GGCTTCAATCTATTTAACTGAAATGTCGGGGAAACGAGATTCGTCGTCGTAGCTTCAATCTGGTC
** * *
14337830 CCCTACACCGCCAGAGAAGTAAGATCTGCCGTCGCGGCTTCAACCCGTTCCACTGTAATGCCAAA
130 CCCTACACCGCC-----A-T-A-A-CT-CCGTCATGGCTTCAATCCATTCCACTGTAATGCCAAA
* * * *
14337895 GAGATAGGATTCGCTACCCACAGCTTTAATCCGCTCCAC-TTCGCTAATCCAAGTCTAAACGCCA
185 GAGATAGGATTCGCTGCCCACAGCCTTAATCCGCTCCACTTTAGCTAATCCAAGTCTTAACGCCA
14337959 GGGAGAT
250 GGGAGAT
* ** * * * *
14337966 AAGGTTTGCCATTGTGGCTTCAATCCGCTCAGCTGCAACGCTAGGGAAGTAAGATTCGCCGTTGT
1 AAGATTCACCATCGTGGCTTCAATCTGCTCCGCTGCAACGC-CGGGAAGTAAGATTCGCCGTTGT
*
14338031 GGCTTCCATCTATT
65 GGCTTCAATCTATT
14338045 CCATCGCAAA
Statistics
Matches: 512, Mismatches: 66, Indels: 39
0.83 0.11 0.06
Matches are distributed among these distances:
251 2 0.00
252 222 0.43
253 2 0.00
254 1 0.00
256 1 0.00
259 1 0.00
260 1 0.00
262 1 0.00
263 1 0.00
265 2 0.00
266 92 0.18
267 186 0.36
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (256 bp):
AAGATTCACCATCGTGGCTTCAATCTGCTCCGCTGCAACGCCGGGAAGTAAGATTCGCCGTTGTG
GCTTCAATCTATTTAACTGAAATGTCGGGGAAACGAGATTCGTCGTCGTAGCTTCAATCTGGTCC
CCTACACCGCCATAACTCCGTCATGGCTTCAATCCATTCCACTGTAATGCCAAAGAGATAGGATT
CGCTGCCCACAGCCTTAATCCGCTCCACTTTAGCTAATCCAAGTCTTAACGCCAGGGAGAT
Found at i:14339438 original size:24 final size:22
Alignment explanation
Indices: 14339404--14339456 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
14339394 AGCCTCTCCA
*
14339404 TTTTTACTTTTTCCATTTTTCATT
1 TTTTTATTTTTTCCA--TTTCATT
*
14339428 TTTTTATTTTTTTCATTTCATT
1 TTTTTATTTTTTCCATTTCATT
14339450 TTTTTAT
1 TTTTTAT
14339457 GACTCAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 14 0.52
24 13 0.48
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTTATTTTTTCCATTTCATT
Found at i:14339988 original size:14 final size:13
Alignment explanation
Indices: 14339955--14339986 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
14339945 TTTATTTTTG
14339955 TTTTTTGTTCTTA
1 TTTTTTGTTCTTA
14339968 TTTTTTGTTCTTA
1 TTTTTTGTTCTTA
14339981 TTTTTT
1 TTTTTT
14339987 TGGATTGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.06, G:0.06, T:0.81
Consensus pattern (13 bp):
TTTTTTGTTCTTA
Found at i:14342628 original size:16 final size:16
Alignment explanation
Indices: 14342603--14342637 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14342593 TTCTATAATG
*
14342603 AAATGCCATGTAGTCA
1 AAATGCCATGCAGTCA
*
14342619 AAATGTCATGCAGTCA
1 AAATGCCATGCAGTCA
14342635 AAA
1 AAA
14342638 CAAAACACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.23
Consensus pattern (16 bp):
AAATGCCATGCAGTCA
Found at i:14344054 original size:34 final size:34
Alignment explanation
Indices: 14343956--14344054 Score: 87
Period size: 34 Copynumber: 3.0 Consensus size: 34
14343946 AAATTATGAA
* * *
14343956 AATATGTATATATATGTA-TATAAAAAATGCA-G
1 AATATATATATATATATATTATAAAAAATGTATG
* * * * *
14343988 AAAATATATTTATA-ATAATTTTAAATAGTGTATG
1 AATATATATATATATAT-ATTATAAAAAATGTATG
*
14344022 AATATATATACATATATATTATAAAAAATGTAT
1 AATATATATATATATATATTATAAAAAATGTAT
14344055 ATATATGTAT
Statistics
Matches: 49, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
31 1 0.02
32 12 0.24
33 9 0.18
34 25 0.51
35 2 0.04
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.39
Consensus pattern (34 bp):
AATATATATATATATATATTATAAAAAATGTATG
Found at i:14344090 original size:18 final size:19
Alignment explanation
Indices: 14344069--14344108 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
14344059 ATGTATGGAT
14344069 TATAAAATATGA-AAAATG
1 TATAAAATATGATAAAATG
*
14344087 TAT-AAATATTATAAAATG
1 TATAAAATATGATAAAATG
14344105 TATA
1 TATA
14344109 CGTACATACA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (19 bp):
TATAAAATATGATAAAATG
Found at i:14348748 original size:5 final size:5
Alignment explanation
Indices: 14348738--14348772 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
14348728 ACTAAGATAC
**
14348738 CAGGG CAGGG CAGGG CAGGG CAGTT CAGGG CAGGG
1 CAGGG CAGGG CAGGG CAGGG CAGGG CAGGG CAGGG
14348773 GAAATGTGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.54, T:0.06
Consensus pattern (5 bp):
CAGGG
Found at i:14350226 original size:23 final size:24
Alignment explanation
Indices: 14350192--14350246 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
14350182 ATATATTATA
*
14350192 AATTTA-ATTTAAAT-TTTACAAAT
1 AATTTATA-TTAAATATTTAAAAAT
*
14350215 AATTTATATTAATTATTTAAAAAT
1 AATTTATATTAAATATTTAAAAAT
14350239 -ATTTATAT
1 AATTTATAT
14350247 ATTTCATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 19 0.68
24 9 0.32
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
AATTTATATTAAATATTTAAAAAT
Found at i:14352431 original size:3 final size:3
Alignment explanation
Indices: 14352423--14352459 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
14352413 TTAAAATGAC
14352423 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
14352460 AGACACGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:14356689 original size:25 final size:25
Alignment explanation
Indices: 14356637--14356692 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
14356627 CCAAGAATGT
* * *
14356637 TTTACAGAGAGTTCGCCATAAAGGC
1 TTTACAGAGAGTTCACCACAAAAGC
* *
14356662 TTTATAGAGAGTTCACCACAAAATC
1 TTTACAGAGAGTTCACCACAAAAGC
14356687 TTTACA
1 TTTACA
14356693 AAATATTCAC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (25 bp):
TTTACAGAGAGTTCACCACAAAAGC
Found at i:14358118 original size:136 final size:136
Alignment explanation
Indices: 14357874--14358144 Score: 524
Period size: 136 Copynumber: 2.0 Consensus size: 136
14357864 ATCTTATCAG
14357874 GGATGCAATTGGGACGCTAAGAGTAAAAAACGACCAGGAAATGACCAAATTGAAACACAATCAAT
1 GGATGCAATTGGGACGCTAAGAGTAAAAAACGACCAGGAAATGACCAAATTGAAACACAATCAAT
*
14357939 GAAATGAGGTTGAATAAAAAATGTGGAAAAAGTTAAGGACTTATCATATTCTTCTGACTTTGTAA
66 GAAATGAGGTCGAATAAAAAATGTGGAAAAAGTTAAGGACTTATCATATTCTTCTGACTTTGTAA
14358004 AAGCCT
131 AAGCCT
14358010 GGATGCAATTGGGACGCTAAGAGTAAAAAACGACCAGGAAATGACCAAATTGAAACACAATCAAT
1 GGATGCAATTGGGACGCTAAGAGTAAAAAACGACCAGGAAATGACCAAATTGAAACACAATCAAT
*
14358075 GAAATGAGGTCGAATAAAAAATGTGGAAAAAGTTAAGGACTTATCATATTCTTTTGACTTTGTAA
66 GAAATGAGGTCGAATAAAAAATGTGGAAAAAGTTAAGGACTTATCATATTCTTCTGACTTTGTAA
14358140 AAGCC
131 AAGCC
14358145 AAAAATAGAA
Statistics
Matches: 133, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
136 133 1.00
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.23
Consensus pattern (136 bp):
GGATGCAATTGGGACGCTAAGAGTAAAAAACGACCAGGAAATGACCAAATTGAAACACAATCAAT
GAAATGAGGTCGAATAAAAAATGTGGAAAAAGTTAAGGACTTATCATATTCTTCTGACTTTGTAA
AAGCCT
Found at i:14359049 original size:12 final size:12
Alignment explanation
Indices: 14359032--14359061 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14359022 ACAAAATCCG
14359032 AATTTAATTTCT
1 AATTTAATTTCT
*
14359044 AATTTAATTTTT
1 AATTTAATTTCT
14359056 AATTTA
1 AATTTA
14359062 TTTAATCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (12 bp):
AATTTAATTTCT
Found at i:14360516 original size:31 final size:30
Alignment explanation
Indices: 14360481--14360585 Score: 122
Period size: 31 Copynumber: 3.4 Consensus size: 30
14360471 GATATTAAAT
*
14360481 TTAATTTAATATTTATTTAGATAGTATTTTA
1 TTAATTTAATATTTATCTAGATA-TATTTTA
* * * **
14360512 TTAATTTAATATTAATGT-GAGATATTAAA
1 TTAATTTAATATTTATCTAGATATATTTTA
14360541 TTTAATTTAATATTTATCTAGATAATATTTTA
1 -TTAATTTAATATTTATCTAGAT-ATATTTTA
14360573 TTAATTTAATATT
1 TTAATTTAATATT
14360586 AATATGATTA
Statistics
Matches: 61, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
29 5 0.08
30 19 0.31
31 31 0.51
32 6 0.10
ACGTcount: A:0.39, C:0.01, G:0.06, T:0.54
Consensus pattern (30 bp):
TTAATTTAATATTTATCTAGATATATTTTA
Found at i:14360525 original size:11 final size:11
Alignment explanation
Indices: 14360481--14360588 Score: 54
Period size: 11 Copynumber: 10.5 Consensus size: 11
14360471 GATATTAAAT
14360481 TTAATTTAATA
1 TTAATTTAATA
*
14360492 TTTATTTAGATA
1 TTAATTTA-ATA
*
14360504 GT-ATTT--TA
1 TTAATTTAATA
14360512 TTAATTTAATA
1 TTAATTTAATA
* * *
14360523 TTAATGTGAGA
1 TTAATTTAATA
*
14360534 -T-ATTAAAT-
1 TTAATTTAATA
14360542 TTAATTTAATA
1 TTAATTTAATA
* *
14360553 TTTATCTAGATA
1 TTAATTTA-ATA
*
14360565 AT-ATTT--TA
1 TTAATTTAATA
14360573 TTAATTTAATA
1 TTAATTTAATA
14360584 TTAAT
1 TTAAT
14360589 ATGATTAATT
Statistics
Matches: 70, Mismatches: 16, Indels: 22
0.65 0.15 0.20
Matches are distributed among these distances:
8 6 0.09
9 12 0.17
10 7 0.10
11 37 0.53
12 8 0.11
ACGTcount: A:0.40, C:0.01, G:0.06, T:0.54
Consensus pattern (11 bp):
TTAATTTAATA
Found at i:14360533 original size:61 final size:61
Alignment explanation
Indices: 14360459--14360592 Score: 232
Period size: 61 Copynumber: 2.2 Consensus size: 61
14360449 ATTTATCTAT
* * *
14360459 ATATTAAAATGAGATATTAAATTTAATTTAATATTTATTTAGATAGTATTTTATTAATTTA
1 ATATTAATATGAGATATTAAATTTAATTTAATATTTATCTAGATAATATTTTATTAATTTA
*
14360520 ATATTAATGTGAGATATTAAATTTAATTTAATATTTATCTAGATAATATTTTATTAATTTA
1 ATATTAATATGAGATATTAAATTTAATTTAATATTTATCTAGATAATATTTTATTAATTTA
14360581 ATATTAATATGA
1 ATATTAATATGA
14360593 TTAATTCTAA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 68 1.00
ACGTcount: A:0.43, C:0.01, G:0.07, T:0.50
Consensus pattern (61 bp):
ATATTAATATGAGATATTAAATTTAATTTAATATTTATCTAGATAATATTTTATTAATTTA
Found at i:14363460 original size:26 final size:25
Alignment explanation
Indices: 14363442--14363511 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 25
14363432 AACAAATAAT
*
14363442 TTAAAAATTCTAAAATAACTAAAAA
1 TTAAAAATTCAAAAATAACTAAAAA
*
14363467 TTCAAAATTCAAAAAATATA-TAAAAA
1 TTAAAAATTC-AAAAATA-ACTAAAAA
14363493 TTCATAAAAATTCAAAAAT
1 -T--TAAAAATTCAAAAAT
14363512 CATTATGAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
25 9 0.24
26 12 0.32
27 2 0.05
28 6 0.16
29 8 0.22
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.29
Consensus pattern (25 bp):
TTAAAAATTCAAAAATAACTAAAAA
Found at i:14363493 original size:10 final size:10
Alignment explanation
Indices: 14363470--14363510 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
14363460 CTAAAAATTC
14363470 AAAATTCA-A
1 AAAATTCATA
14363479 AAAATAT-ATA
1 AAAAT-TCATA
14363489 AAAATTCATA
1 AAAATTCATA
14363499 AAAATTCA-A
1 AAAATTCATA
14363508 AAA
1 AAA
14363511 TCATTATGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
9 11 0.38
10 18 0.62
ACGTcount: A:0.68, C:0.07, G:0.00, T:0.24
Consensus pattern (10 bp):
AAAATTCATA
Found at i:14363509 original size:18 final size:18
Alignment explanation
Indices: 14363443--14363511 Score: 63
Period size: 18 Copynumber: 3.8 Consensus size: 18
14363433 ACAAATAATT
* *
14363443 TAAAAATTCTAAAA-TAA
1 TAAAAATTCAAAAATTCA
14363460 CTAAAAATTC-AAAATTCA
1 -TAAAAATTCAAAAATTCA
*
14363478 -AAAAATATATAAAAATTCA
1 TAAAAAT-T-CAAAAATTCA
14363497 TAAAAATTCAAAAAT
1 TAAAAATTCAAAAAT
14363512 CATTATGAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
16 6 0.14
17 5 0.12
18 17 0.40
19 9 0.21
20 6 0.14
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAAAATTCAAAAATTCA
Found at i:14363662 original size:30 final size:31
Alignment explanation
Indices: 14363609--14363668 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
14363599 AATTTAATTA
*
14363609 TTTTTTAAAGGTTGGTGGTCATA-TTGACTT
1 TTTTTTAAAGGTTGGTGGCCATATTTGACTT
14363639 TTTTTTAAAGGTTGAGT-GCCATATTTGACT
1 TTTTTTAAAGGTTG-GTGGCCATATTTGACT
14363669 CAATATCCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.22, C:0.08, G:0.22, T:0.48
Consensus pattern (31 bp):
TTTTTTAAAGGTTGGTGGCCATATTTGACTT
Found at i:14365471 original size:8 final size:8
Alignment explanation
Indices: 14365445--14365472 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
14365435 TGAAATAAAT
14365445 AAATAATA
1 AAATAATA
14365453 AAATAATA
1 AAATAATA
14365461 AAATAATA
1 AAATAATA
14365469 AAAT
1 AAAT
14365473 CTAATTAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (8 bp):
AAATAATA
Found at i:14367648 original size:106 final size:106
Alignment explanation
Indices: 14367519--14367728 Score: 298
Period size: 106 Copynumber: 2.0 Consensus size: 106
14367509 TATCGTTAAT
* *
14367519 TAAATCAAATTTTATGAAAAATGTCTTTGTATTTCGAGTCAATC-GGAAAGAAAATCATGCC-TC
1 TAAATCAAATTTTATGAAAAATGTCTTCGTATTTCGAGTCAATCAAG-AAGAAAATCATGCCGT-
*
14367582 ATAAGTTAGGACACGATGTCTCGAATCCCCAAAAATAAGAAAC
64 ATAAGTTAGGACACGATATCTCGAATCCCCAAAAATAAGAAAC
* * * * *
14367625 TAAATCAAATTTTATGAAGAATGTCTTCGTATTTCGAGTTAATCAAGAAGAGAATTATGCCGTGT
1 TAAATCAAATTTTATGAAAAATGTCTTCGTATTTCGAGTCAATCAAGAAGAAAATCATGCCGTAT
* *
14367690 AAGTTAGGGCACGATATCTCGAATCCCTAAAAATAAGAA
66 AAGTTAGGACACGATATCTCGAATCCCCAAAAATAAGAA
14367729 TACTCATTTT
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
106 90 0.98
107 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (106 bp):
TAAATCAAATTTTATGAAAAATGTCTTCGTATTTCGAGTCAATCAAGAAGAAAATCATGCCGTAT
AAGTTAGGACACGATATCTCGAATCCCCAAAAATAAGAAAC
Found at i:14374026 original size:75 final size:74
Alignment explanation
Indices: 14373927--14374105 Score: 224
Period size: 75 Copynumber: 2.4 Consensus size: 74
14373917 TTTTACATAA
* * ** * *
14373927 ATAATACAAAGTTTATTATTTAAATT-GTAAAAGACCCATAAAATTAATAACTTAAATGGCAAAA
1 ATAATACAAAGTTGACTATTTAAATTACAAAAAAACCC-TAAAATTAATAACTAAAATGGCAAAA
14373991 AAGTCATTAC
65 AAGTCATTAC
14374001 ATAAGTACAAAGTTGACTATTTAAATTACAAAAAAACCCTAAAATTAATAACTAAAATGGCAAAA
1 ATAA-TACAAAGTTGACTATTTAAATTACAAAAAAACCCTAAAATTAATAACTAAAATGGCAAAA
*
14374066 AATTCATTAC
65 AAGTCATTAC
*
14374076 ATAAATATAAA-TT---TATTTAAATTACAAAAA
1 AT-AATACAAAGTTGACTATTTAAATTACAAAAA
14374106 CCCTTAAAAT
Statistics
Matches: 94, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
71 17 0.18
74 6 0.06
75 61 0.65
76 10 0.11
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.30
Consensus pattern (74 bp):
ATAATACAAAGTTGACTATTTAAATTACAAAAAAACCCTAAAATTAATAACTAAAATGGCAAAAA
AGTCATTAC
Found at i:14374322 original size:33 final size:33
Alignment explanation
Indices: 14374280--14374363 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
14374270 AGCCGGAAGT
* **
14374280 AGTGGAGTACGACGGTGGATACGGGCCGAGAGG
1 AGTGGAGTACGACAGTGGATACGAACCGAGAGG
** *
14374313 AGTGGAGTACGGTAGTGGATACGAACCGAGATG
1 AGTGGAGTACGACAGTGGATACGAACCGAGAGG
*
14374346 ACTGGAGTACTGA-AGTGG
1 AGTGGAGTAC-GACAGTGG
14374364 TAGTGGGCAG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 41 0.98
34 1 0.02
ACGTcount: A:0.27, C:0.13, G:0.43, T:0.17
Consensus pattern (33 bp):
AGTGGAGTACGACAGTGGATACGAACCGAGAGG
Found at i:14375287 original size:50 final size:50
Alignment explanation
Indices: 14375228--14375329 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
14375218 GATGCCAAGA
*
14375228 ATAGCATTCGGTAAAGTGTCCATGACTGCAACAATATGAGGCATTCGCCT
1 ATAGCATTCGGTAAAGTGTCCACGACTGCAACAATATGAGGCATTCGCCT
*
14375278 ATAGCATTCGGTAAAGTGTCCACGACTGCAACAATTTGAGGCATTCGCCT
1 ATAGCATTCGGTAAAGTGTCCACGACTGCAACAATATGAGGCATTCGCCT
14375328 AT
1 AT
14375330 GTCTACTACA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (50 bp):
ATAGCATTCGGTAAAGTGTCCACGACTGCAACAATATGAGGCATTCGCCT
Found at i:14376528 original size:106 final size:103
Alignment explanation
Indices: 14376406--14376842 Score: 510
Period size: 106 Copynumber: 4.2 Consensus size: 103
14376396 TTAAATTTAA
* * *
14376406 AAAAAATCACAAAACACTAAACCAAACACTAACCATTTATATAACCTAATCATAAATTACTAACC
1 AAAAAATCACAAAACACTAAACTAAACACTAA-CAATT-TATAACCTAATCATAAATTACTAACA
14376471 AAATAACTATAAATATTTTTTTAAAAAAAATTTACATTACT
64 AAATAACTATAAATATTTTTTTAAAAAAAA-TTACATTACT
* *
14376512 AAAAAATCACAAAACACTAAACTAAACACTAAGAATTTATATAACCTAATCATAAATTACTGACA
1 AAAAAATCACAAAACACTAAACTAAACACTAACAA-TT-TATAACCTAATCATAAATTACTAACA
**
14376577 AAATAACTATAAAATTATTTTTTT-TTAAAAATTACATTACT
64 AAATAACTAT-AAA-TATTTTTTTAAAAAAAATTACATTACT
* *
14376618 AAAAAATCACAAAACCCTAAACTAAATACTAACAATTTATAACCTAATCCCATAAATTACTAACA
1 AAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAAT--CATAAATTACTAACA
* * * *
14376683 AAATAAATAACTATAACATTTATTTTAAAAGAAATTACGTTACT
64 AAATAACT-A-TA-AATATTT-TTTTAAAAAAAATTACATTACT
* * * *
14376727 AAAAAATAACAAAACAC---A--AAACACTAACAATTTATAACATAATCATAAACTATTAACAAA
1 AAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAATCATAAATTACTAACAAA
**
14376787 ATAACTATAAA-ATTATTTTTAAAAAATTTTTACATTACT
66 ATAACTATAAATATT-TTTTTAAAAAA-AATTACATTACT
*
14376826 AAAAACTCACAAAACAC
1 AAAAAATCACAAAACAC
14376843 AACAATTTAT
Statistics
Matches: 289, Mismatches: 30, Indels: 31
0.83 0.09 0.09
Matches are distributed among these distances:
98 12 0.04
99 27 0.09
100 2 0.01
101 1 0.00
102 20 0.07
104 34 0.12
105 3 0.01
106 132 0.46
107 14 0.05
108 16 0.06
109 28 0.10
ACGTcount: A:0.54, C:0.16, G:0.01, T:0.29
Consensus pattern (103 bp):
AAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAATCATAAATTACTAACAAA
ATAACTATAAATATTTTTTTAAAAAAAATTACATTACT
Found at i:14376822 original size:208 final size:207
Alignment explanation
Indices: 14376366--14376842 Score: 542
Period size: 208 Copynumber: 2.3 Consensus size: 207
14376356 AATAAGTAAA
* * * * *
14376366 AAAATAA-AATAAAATTACTTTATATAAAAATTAAATTTA-AAAAAAATCACAAAACACTAAACC
1 AAAATAACTATAAAATTATTTTTTA-AAAAATTACA-TTACTAAAAAATCACAAAACACTAAACC
* * * *
14376429 AAACACTAACCATTTATATAACCTAATCATAAATTACTAACCAAATAACTATAAATATTTTTTTA
64 AAACACTAACCAATTATATAACCTAATCATAAATTACTAACAAAATAAATATAAACATTTTTTTA
* * *
14376494 AAAAAAATTTACATTACTAAAAAATCACAAAACACTAAACTAAACACTAAGAATTTATATAACCT
129 AAAAAAATTTACATTACTAAAAAATAACAAAACAC--AAC-AAACACTAACAATTTATATAACAT
* *
14376559 AATCATAAATTACTGAC
191 AATCATAAACTACTAAC
* * *
14376576 AAAATAACTATAAAATTATTTTTTTTTAAAAATTACATTACTAAAAAATCACAAAACCCTAAACT
1 AAAATAACTATAAAATTA--TTTTTTAAAAAATTACATTACTAAAAAATCACAAAACACTAAACC
*
14376641 AAATACTAA-CAATT-TATAACCTAATCCCATAAATTACTAACAAAATAAATAACTATAACATTT
64 AAACACTAACCAATTATATAACCTAAT--CATAAATTACTAACAAAATAAAT-A-TA-AACATTT
* *
14376704 ATTTTAAAAGAAA-TTACGTTACTAAAAAATAACAAAACAC-A-AAACACTAACAA-TT-TATAA
124 -TTTTAAAAAAAATTTACATTACTAAAAAATAACAAAACACAACAAACACTAACAATTTATATAA
*
14376764 CATAATCATAAACTATTAAC
188 CATAATCATAAACTACTAAC
*
14376784 AAAATAACTATAAAATTA-TTTTTAAAAAATTTTTACATTACTAAAAACTCACAAAACAC
1 AAAATAACTATAAAATTATTTTTTAAAAAA---TTACATTACTAAAAAATCACAAAACAC
14376843 AACAATTTAT
Statistics
Matches: 230, Mismatches: 24, Indels: 28
0.82 0.09 0.10
Matches are distributed among these distances:
205 10 0.04
208 64 0.28
209 2 0.01
210 29 0.13
211 16 0.07
212 60 0.26
213 5 0.02
214 2 0.01
215 31 0.13
216 11 0.05
ACGTcount: A:0.55, C:0.15, G:0.01, T:0.30
Consensus pattern (207 bp):
AAAATAACTATAAAATTATTTTTTAAAAAATTACATTACTAAAAAATCACAAAACACTAAACCAA
ACACTAACCAATTATATAACCTAATCATAAATTACTAACAAAATAAATATAAACATTTTTTTAAA
AAAAATTTACATTACTAAAAAATAACAAAACACAACAAACACTAACAATTTATATAACATAATCA
TAAACTACTAAC
Found at i:14384391 original size:103 final size:103
Alignment explanation
Indices: 14384212--14384437 Score: 362
Period size: 103 Copynumber: 2.2 Consensus size: 103
14384202 AACCGTTATT
* * * *
14384212 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGAGGGA
* *
14384277 ATCAGCACATAGCAACCCCCTTTTTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATAC
*
14384315 GGTGGATATCGCACTTAGCACCACTACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGAGGGA
1 GGTGGATATCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGAGGGA
*
14384380 ATCAGCACATAGCAACCCCCTTTTCATTTCAAATATAC
66 ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATAC
**
14384418 AATGGATATCGCACTTAGCA
1 GGTGGATATCGCACTTAGCA
14384438 ACCCCTCGGG
Statistics
Matches: 113, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
103 113 1.00
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (103 bp):
GGTGGATATCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGAGGGA
ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATAC
Found at i:14384437 original size:71 final size:72
Alignment explanation
Indices: 14384357--14384509 Score: 245
Period size: 71 Copynumber: 2.1 Consensus size: 72
14384347 CGGGGAATCA
* *
14384357 GCACTTAGCAACCCCTCGAGGGAATCAGCACATAGCAACCCCCTTT-TCATTTCAAATATACAAT
1 GCACTTAGCAACCCCTCGAGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAAT
14384421 GGATATC
66 GGATATC
* **
14384428 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACGGT
1 GCACTTAGCAACCCCTCGAGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAAT
14384493 GGATATC
66 GGATATC
*
14384500 GCACATAGCA
1 GCACTTAGCA
14384510 CCACCAATGA
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (72 bp):
GCACTTAGCAACCCCTCGAGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACAAT
GGATATC
Found at i:14384909 original size:30 final size:29
Alignment explanation
Indices: 14384875--14384939 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
14384865 TAATCCACCA
14384875 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
14384905 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
14384935 CCCAA
1 CCCAA
14384940 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:14384913 original size:31 final size:30
Alignment explanation
Indices: 14384882--14384939 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14384872 CCACCCAACT
14384882 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
14384912 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
14384940 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:14387669 original size:59 final size:59
Alignment explanation
Indices: 14387577--14387701 Score: 169
Period size: 59 Copynumber: 2.1 Consensus size: 59
14387567 ATATTTAAAT
* * * * *
14387577 ATGCAATAGTCAATCTACGTTGCATGTTGCAATTAAAGTGTATTGTCACTTTGTTTGGG
1 ATGCAATAGTCAATCTACCTTGCATATTGCAATTAAAGTGGATTGTCACTTTGTTAGGA
* * * *
14387636 ATGCAATAGTTAATTTGCCTTGCATATTGCAATTGAAGTGGATTGTCACTTTGTTAGGA
1 ATGCAATAGTCAATCTACCTTGCATATTGCAATTAAAGTGGATTGTCACTTTGTTAGGA
14387695 ATGCAAT
1 ATGCAAT
14387702 TTAGGATGGG
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (59 bp):
ATGCAATAGTCAATCTACCTTGCATATTGCAATTAAAGTGGATTGTCACTTTGTTAGGA
Found at i:14388093 original size:31 final size:30
Alignment explanation
Indices: 14388058--14388117 Score: 93
Period size: 31 Copynumber: 2.0 Consensus size: 30
14388048 TTGTATATCT
* *
14388058 TTTAGGAATATATTATATATCTTTTCATATA
1 TTTAGGAATATATAATATAT-ATTTCATATA
14388089 TTTAGGAATATATAATATATATTTCATAT
1 TTTAGGAATATATAATATATATTTCATAT
14388118 TCATACGTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 8 0.30
31 19 0.70
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (30 bp):
TTTAGGAATATATAATATATATTTCATATA
Found at i:14388594 original size:13 final size:13
Alignment explanation
Indices: 14388576--14388601 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14388566 ATTAAATTAC
14388576 TTATATAATCCTT
1 TTATATAATCCTT
14388589 TTATATAATCCTT
1 TTATATAATCCTT
14388602 CTAATATACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (13 bp):
TTATATAATCCTT
Found at i:14390680 original size:21 final size:20
Alignment explanation
Indices: 14390642--14390704 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
14390632 ATTCAATTTC
14390642 TCAATCC-AAT-ATA-CATT
1 TCAATCCAAATAATATCATT
14390659 TCAATACCACAATAAT-TCATT
1 TCAAT-CCA-AATAATATCATT
*
14390680 T-AATTCAAATAATATCATT
1 TCAATCCAAATAATATCATT
14390699 TGCAAT
1 T-CAAT
14390705 TTCCATTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
17 5 0.14
18 8 0.22
19 8 0.22
20 6 0.16
21 10 0.27
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.37
Consensus pattern (20 bp):
TCAATCCAAATAATATCATT
Found at i:14391940 original size:26 final size:26
Alignment explanation
Indices: 14391904--14391956 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14391894 GCTTGCTCTG
14391904 TTTCTTTTATGTGAAAATAGACTCAT
1 TTTCTTTTATGTGAAAATAGACTCAT
14391930 TTTCTTTTATGTGAAAATAGACTCAT
1 TTTCTTTTATGTGAAAATAGACTCAT
14391956 T
1 T
14391957 CAGCTTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.47
Consensus pattern (26 bp):
TTTCTTTTATGTGAAAATAGACTCAT
Found at i:14392292 original size:45 final size:45
Alignment explanation
Indices: 14392228--14392320 Score: 150
Period size: 45 Copynumber: 2.1 Consensus size: 45
14392218 ACAGATACTA
* * *
14392228 GGTGGATTCAGCACGTAGCAACCACCTTATTAATCAATGATGTCC
1 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCC
*
14392273 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTTC
1 GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCC
14392318 GGT
1 GGT
14392321 TCACATAGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (45 bp):
GGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCC
Found at i:14392384 original size:51 final size:50
Alignment explanation
Indices: 14392317--14392481 Score: 188
Period size: 51 Copynumber: 3.3 Consensus size: 50
14392307 CAATGATGTT
* *
14392317 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCA-TACCATC
* * * * *
14392368 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATACCATC
* * * * *
14392419 CGGTACGCATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATACCA-TC
14392469 CGGTACACGTAGT
1 CGGTACACGTAGT
14392482 GTAACATCCC
Statistics
Matches: 93, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
49 2 0.02
50 14 0.15
51 75 0.81
52 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (50 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATACCATC
Found at i:14393808 original size:41 final size:41
Alignment explanation
Indices: 14393722--14393821 Score: 134
Period size: 41 Copynumber: 2.5 Consensus size: 41
14393712 CTATCTGATT
* *
14393722 AGCACTAAGTGTGCG-AACTAAATGATGAGGTTGAATATCG
1 AGCACTAAGTGTGCGAAACTAAATAATGAGGTTAAATATCG
*
14393762 AGCACTAAGTGTGCGAAACTAAATAATGATGTTAAATGA-CTG
1 AGCACTAAGTGTGCGAAACTAAATAATGAGGTTAAAT-ATC-G
14393804 -GCACTAAGTGTGCGAAAC
1 AGCACTAAGTGTGCGAAAC
14393822 CGAGATCAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
40 15 0.28
41 37 0.69
42 2 0.04
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (41 bp):
AGCACTAAGTGTGCGAAACTAAATAATGAGGTTAAATATCG
Found at i:14396223 original size:477 final size:477
Alignment explanation
Indices: 14395329--14396282 Score: 1908
Period size: 477 Copynumber: 2.0 Consensus size: 477
14395319 AAACTAAAAC
14395329 CTGATTATAAATATCATTAATAACTTCACAATAAAAGAAAATTATAATATTAATAAACTTTAATA
1 CTGATTATAAATATCATTAATAACTTCACAATAAAAGAAAATTATAATATTAATAAACTTTAATA
14395394 TTTTGATATTGACAAATTGAATAAAGAAAATAAACTTTTTAATTAAATTCAAAATCGTGTAATTA
66 TTTTGATATTGACAAATTGAATAAAGAAAATAAACTTTTTAATTAAATTCAAAATCGTGTAATTA
14395459 ATTTAATTTGCACAATATGGAAATTCAAATAAATTCAAGTTTTGTTTTTTGCTTTTCTTTCAATT
131 ATTTAATTTGCACAATATGGAAATTCAAATAAATTCAAGTTTTGTTTTTTGCTTTTCTTTCAATT
14395524 TAGACCCCGTACTAAAGTTTAGACTCATAACCAGATACACGAATCCGCCACCCTGAGTTGTTTGG
196 TAGACCCCGTACTAAAGTTTAGACTCATAACCAGATACACGAATCCGCCACCCTGAGTTGTTTGG
14395589 CAACGATGGCTATCAGAGTAGTCCACGACCCTCTGGGAATTGGGGCTAACAATAATAACAACTGA
261 CAACGATGGCTATCAGAGTAGTCCACGACCCTCTGGGAATTGGGGCTAACAATAATAACAACTGA
14395654 CCGACTTGGCCTTTTCTCCATCGACCCTCTGAGAATTGGGGAAATCTAAATTCTCTGACATAAAG
326 CCGACTTGGCCTTTTCTCCATCGACCCTCTGAGAATTGGGGAAATCTAAATTCTCTGACATAAAG
14395719 ACTATGTGTTATGTCAACTATATCTGATTTAGTCTAACTTAGTGAAACGGGGTAAAAACCAAATT
391 ACTATGTGTTATGTCAACTATATCTGATTTAGTCTAACTTAGTGAAACGGGGTAAAAACCAAATT
14395784 TCATGATCCATTTCAATTTTAT
456 TCATGATCCATTTCAATTTTAT
14395806 CTGATTATAAATATCATTAATAACTTCACAATAAAAGAAAATTATAATATTAATAAACTTTAATA
1 CTGATTATAAATATCATTAATAACTTCACAATAAAAGAAAATTATAATATTAATAAACTTTAATA
14395871 TTTTGATATTGACAAATTGAATAAAGAAAATAAACTTTTTAATTAAATTCAAAATCGTGTAATTA
66 TTTTGATATTGACAAATTGAATAAAGAAAATAAACTTTTTAATTAAATTCAAAATCGTGTAATTA
14395936 ATTTAATTTGCACAATATGGAAATTCAAATAAATTCAAGTTTTGTTTTTTGCTTTTCTTTCAATT
131 ATTTAATTTGCACAATATGGAAATTCAAATAAATTCAAGTTTTGTTTTTTGCTTTTCTTTCAATT
14396001 TAGACCCCGTACTAAAGTTTAGACTCATAACCAGATACACGAATCCGCCACCCTGAGTTGTTTGG
196 TAGACCCCGTACTAAAGTTTAGACTCATAACCAGATACACGAATCCGCCACCCTGAGTTGTTTGG
14396066 CAACGATGGCTATCAGAGTAGTCCACGACCCTCTGGGAATTGGGGCTAACAATAATAACAACTGA
261 CAACGATGGCTATCAGAGTAGTCCACGACCCTCTGGGAATTGGGGCTAACAATAATAACAACTGA
14396131 CCGACTTGGCCTTTTCTCCATCGACCCTCTGAGAATTGGGGAAATCTAAATTCTCTGACATAAAG
326 CCGACTTGGCCTTTTCTCCATCGACCCTCTGAGAATTGGGGAAATCTAAATTCTCTGACATAAAG
14396196 ACTATGTGTTATGTCAACTATATCTGATTTAGTCTAACTTAGTGAAACGGGGTAAAAACCAAATT
391 ACTATGTGTTATGTCAACTATATCTGATTTAGTCTAACTTAGTGAAACGGGGTAAAAACCAAATT
14396261 TCATGATCCATTTCAATTTTAT
456 TCATGATCCATTTCAATTTTAT
14396283 TTTCATATAA
Statistics
Matches: 477, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
477 477 1.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.34
Consensus pattern (477 bp):
CTGATTATAAATATCATTAATAACTTCACAATAAAAGAAAATTATAATATTAATAAACTTTAATA
TTTTGATATTGACAAATTGAATAAAGAAAATAAACTTTTTAATTAAATTCAAAATCGTGTAATTA
ATTTAATTTGCACAATATGGAAATTCAAATAAATTCAAGTTTTGTTTTTTGCTTTTCTTTCAATT
TAGACCCCGTACTAAAGTTTAGACTCATAACCAGATACACGAATCCGCCACCCTGAGTTGTTTGG
CAACGATGGCTATCAGAGTAGTCCACGACCCTCTGGGAATTGGGGCTAACAATAATAACAACTGA
CCGACTTGGCCTTTTCTCCATCGACCCTCTGAGAATTGGGGAAATCTAAATTCTCTGACATAAAG
ACTATGTGTTATGTCAACTATATCTGATTTAGTCTAACTTAGTGAAACGGGGTAAAAACCAAATT
TCATGATCCATTTCAATTTTAT
Found at i:14400973 original size:18 final size:18
Alignment explanation
Indices: 14400952--14400990 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
14400942 TAAAAAAATA
14400952 AAAAATAA-TAAAATAAGT
1 AAAAATAAGT-AAATAAGT
14400970 AAAAATAAGTAAATAAGT
1 AAAAATAAGTAAATAAGT
14400988 AAA
1 AAA
14400991 TAAGCTGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 19 0.95
19 1 0.05
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.21
Consensus pattern (18 bp):
AAAAATAAGTAAATAAGT
Found at i:14400975 original size:10 final size:10
Alignment explanation
Indices: 14400952--14400990 Score: 50
Period size: 8 Copynumber: 4.3 Consensus size: 10
14400942 TAAAAAAATA
14400952 AAAAATAA-T
1 AAAAATAAGT
14400961 -AAAATAAGT
1 AAAAATAAGT
14400970 AAAAATAAGT
1 AAAAATAAGT
14400980 --AAATAAGT
1 AAAAATAAGT
14400988 AAA
1 AAA
14400991 TAAGCTGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
8 15 0.58
9 1 0.04
10 10 0.38
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.21
Consensus pattern (10 bp):
AAAAATAAGT
Found at i:14400983 original size:26 final size:25
Alignment explanation
Indices: 14400945--14401010 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 25
14400935 TGGTTTTTAA
14400945 AAAAATAAAAAATAA-TAAAATAAGT
1 AAAAATAAAAAATAAGT-AAATAAGT
*
14400970 AAAAATAAGTAAATAAGTAAATAAGCT
1 AAAAATAA-AAAATAAGTAAATAAG-T
14400997 GGAAAAATAAAAAA
1 --AAAAATAAAAAA
14401011 AGACTACCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
25 8 0.24
26 13 0.38
27 2 0.06
28 3 0.09
29 8 0.24
ACGTcount: A:0.71, C:0.02, G:0.09, T:0.18
Consensus pattern (25 bp):
AAAAATAAAAAATAAGTAAATAAGT
Found at i:14401973 original size:132 final size:132
Alignment explanation
Indices: 14401745--14402079 Score: 465
Period size: 132 Copynumber: 2.5 Consensus size: 132
14401735 CCCACTACGA
* *
14401745 TGGGAAGATAAGATTCACCGTCTTCGATCTACTCCACTATTGCTTAGGGAGACA-AGATCTGCAA
1 TGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGA-ATCTGCAA
* * *
14401809 TCTTCAACCTACTCCACTGTTGCTCAAAGAGATAGGACTAATGGCCTAAATCTGCTTCTCCACTA
65 TCTTCAACCTACTCCACTGCTGCTCAAAGAGATAGGACTAATGACCTAAATCTACTTCTCCACTA
14401874 TCT
130 TCT
* *
14401877 TGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAAT
1 TGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAAT
** * *
14401942 CTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTAATGACTTAAATCTACTTCTCCACTAT
66 CTTCAACCTACTCCACTGCTGCTCAAAGAGATAGGACTAATGACCTAAATCTACTTCTCCACTAT
14402007 CT
131 CT
* ** * * * * * *
14402009 TGAGAAGATAAGATTTGCCGTCTTTGATCTGCTCCGCCACTGCTTGGGGAGACAGGATCTGCTAT
1 TGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAAT
*
14402074 TTTCAA
66 CTTCAA
14402080 TGGTTTATTC
Statistics
Matches: 179, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
132 178 0.99
133 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (132 bp):
TGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCAAT
CTTCAACCTACTCCACTGCTGCTCAAAGAGATAGGACTAATGACCTAAATCTACTTCTCCACTAT
CT
Found at i:14425655 original size:20 final size:22
Alignment explanation
Indices: 14425614--14425656 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14425604 AATTTTGTGT
*
14425614 AAAAAAATCCAGTGTTTTCAAA
1 AAAAAAATCCAGTGTTTCCAAA
14425636 AAAAAAATCCA-T-TTTCCAAA
1 AAAAAAATCCAGTGTTTCCAAA
14425656 A
1 A
14425657 TTTTTAGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 1 0.05
22 11 0.55
ACGTcount: A:0.53, C:0.16, G:0.05, T:0.26
Consensus pattern (22 bp):
AAAAAAATCCAGTGTTTCCAAA
Found at i:14425719 original size:33 final size:34
Alignment explanation
Indices: 14425672--14425748 Score: 111
Period size: 33 Copynumber: 2.3 Consensus size: 34
14425662 AGTGTCTTCT
**
14425672 AAAAATTTTTGTGTTTCAAAAATTTTC-GTTTTC
1 AAAAATTTCCGTGTTTCAAAAATTTTCGGTTTTC
14425705 AAAAATTTCCGTGTTTCAAAAATTTTCGTGTTTTC
1 AAAAATTTCCGTGTTTCAAAAATTTTCG-GTTTTC
*
14425740 AAAATTTTC
1 AAAAATTTC
14425749 ATGTTTTCGT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
33 25 0.64
35 14 0.36
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.48
Consensus pattern (34 bp):
AAAAATTTCCGTGTTTCAAAAATTTTCGGTTTTC
Found at i:14425808 original size:18 final size:18
Alignment explanation
Indices: 14425782--14425821 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
14425772 TTCTCGTGTT
* *
14425782 TTTTTAAAAAAATTCATG
1 TTTTAAAAAAAATACATG
14425800 TTTTAAAAAAAATACATG
1 TTTTAAAAAAAATACATG
14425818 TTTT
1 TTTT
14425822 CGAAATTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (18 bp):
TTTTAAAAAAAATACATG
Found at i:14425913 original size:18 final size:18
Alignment explanation
Indices: 14425647--14425913 Score: 147
Period size: 17 Copynumber: 14.6 Consensus size: 18
14425637 AAAAAATCCA
* *
14425647 TTTTCCAAAATTTTTAGTG
1 TTTT-CAAAAATTTTCGTG
* *
14425666 TCTTCTAAAAATTTTTGTG
1 TTTTC-AAAAATTTTCGTG
14425685 -TTTCAAAAATTTTC--G
1 TTTTCAAAAATTTTCGTG
*
14425700 TTTTCAAAAATTTCCGTG
1 TTTTCAAAAATTTTCGTG
14425718 -TTTCAAAAATTTTCGTG
1 TTTTCAAAAATTTTCGTG
14425735 TTTTCAAAATTTTCATGTTTTCGTG
1 TTTTCAAAA-----A--TTTTCGTG
*
14425760 TTTTCAAAAAAATTCTCGTG
1 TTTTC--AAAAATTTTCGTG
* ** *
14425780 TTTTTTTAAAAAAATTCATG
1 --TTTTCAAAAATTTTCGTG
* ** * *
14425800 TTTTAAAAAAAATACATG
1 TTTTCAAAAATTTTCGTG
*
14425818 TTTTC-GAAATTTTCGTG
1 TTTTCAAAAATTTTCGTG
*
14425835 TTTTCAAAATTTTTCGT-
1 TTTTCAAAAATTTTCGTG
* ** *
14425852 ATTTCAAAAATCCTCTTG
1 TTTTCAAAAATTTTCGTG
14425870 TTTTC-AAAA-TTTCGGTG
1 TTTTCAAAAATTTTC-GTG
*
14425887 TTTT-GAAAATTTTCGTG
1 TTTTCAAAAATTTTCGTG
14425904 TTTTCAAAAA
1 TTTTCAAAAA
14425914 AAAATATCGT
Statistics
Matches: 193, Mismatches: 33, Indels: 45
0.71 0.12 0.17
Matches are distributed among these distances:
15 1 0.01
16 15 0.08
17 70 0.36
18 54 0.28
19 14 0.07
20 16 0.08
22 5 0.03
23 1 0.01
25 13 0.07
27 4 0.02
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.48
Consensus pattern (18 bp):
TTTTCAAAAATTTTCGTG
Found at i:14429406 original size:16 final size:16
Alignment explanation
Indices: 14429385--14429418 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14429375 TTTTAGGATG
* *
14429385 AAATGCTATGCAGTCA
1 AAATGCCATGCAATCA
14429401 AAATGCCATGCAATCA
1 AAATGCCATGCAATCA
14429417 AA
1 AA
14429419 GCAAAACATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (16 bp):
AAATGCCATGCAATCA
Found at i:14430743 original size:3 final size:3
Alignment explanation
Indices: 14430725--14430779 Score: 76
Period size: 3 Copynumber: 18.7 Consensus size: 3
14430715 AGATAAATCG
* *
14430725 TAA TAA AAA T-A TAA TAA TAA TAA TAT TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
14430772 TAG TAA TA
1 TAA TAA TA
14430780 GCAGCAATGA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:14433722 original size:15 final size:14
Alignment explanation
Indices: 14433692--14433728 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
14433682 TAATAATGCA
*
14433692 AATAACAATCTAAC
1 AATAACAATATAAC
14433706 AATAACAATAATAAC
1 AATAACAAT-ATAAC
14433721 AATAACAA
1 AATAACAA
14433729 AAAAAATGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.65, C:0.16, G:0.00, T:0.19
Consensus pattern (14 bp):
AATAACAATATAAC
Found at i:14441326 original size:31 final size:31
Alignment explanation
Indices: 14441288--14441356 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
14441278 CCGAAAAAAA
* * *
14441288 TTAAATACC-AACTTAAGAAAAAGTGTCAAGT
1 TTAAATACCGAA-TTAAAAAAAAATGTCAAAT
14441319 TTAAATACCGAATTAAAAAAAAATGTCAAAT
1 TTAAATACCGAATTAAAAAAAAATGTCAAAT
*
14441350 TCAAATA
1 TTAAATA
14441357 TCAATCGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 31 0.94
32 2 0.06
ACGTcount: A:0.54, C:0.12, G:0.09, T:0.26
Consensus pattern (31 bp):
TTAAATACCGAATTAAAAAAAAATGTCAAAT
Found at i:14443795 original size:19 final size:19
Alignment explanation
Indices: 14443771--14443808 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14443761 AACAACAAAT
14443771 TACCATTTCCTACATGCTC
1 TACCATTTCCTACATGCTC
14443790 TACCATTTCCTACATGCTC
1 TACCATTTCCTACATGCTC
14443809 GAGCATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.37, G:0.05, T:0.37
Consensus pattern (19 bp):
TACCATTTCCTACATGCTC
Found at i:14443815 original size:19 final size:19
Alignment explanation
Indices: 14443772--14443815 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
14443762 ACAACAAATT
*
14443772 ACCATTTCCTACATGCTCT
1 ACCATTTCCTACATGCTCG
14443791 ACCATTTCCTACATGCTCG
1 ACCATTTCCTACATGCTCG
*
14443810 AGCATT
1 ACCATT
14443816 AAACAACTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.23, C:0.34, G:0.09, T:0.34
Consensus pattern (19 bp):
ACCATTTCCTACATGCTCG
Found at i:14444989 original size:24 final size:21
Alignment explanation
Indices: 14444934--14444990 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 21
14444924 GTATTTAAAA
14444934 AAAACAAATAAACTAATAATGG
1 AAAA-AAATAAACTAATAATGG
* *
14444956 AATAAAATAACACTAATATTGG
1 AAAAAAATAA-ACTAATAATGG
14444978 CAAGAAAAATAAA
1 -AA-AAAAATAAA
14444991 ATAAACAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 6 0.21
22 13 0.45
23 3 0.10
24 7 0.24
ACGTcount: A:0.63, C:0.09, G:0.09, T:0.19
Consensus pattern (21 bp):
AAAAAAATAAACTAATAATGG
Found at i:14445027 original size:19 final size:18
Alignment explanation
Indices: 14445005--14445040 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
14444995 ACAAACCAAT
14445005 ATAAAAAAATAGTGATAAA
1 ATAAAAAAATAGT-ATAAA
*
14445024 ATAAAAAACTAGTATAA
1 ATAAAAAAATAGTATAA
14445041 GATAGATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.67, C:0.03, G:0.08, T:0.22
Consensus pattern (18 bp):
ATAAAAAAATAGTATAAA
Found at i:14448764 original size:17 final size:17
Alignment explanation
Indices: 14448742--14448776 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14448732 GGACTTTCTC
14448742 CTTTC-TTCTTTCTTTTT
1 CTTTCTTTCTTT-TTTTT
14448759 CTTTCTTTCTTTTTTTT
1 CTTTCTTTCTTTTTTTT
14448776 C
1 C
14448777 CAATTTGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (17 bp):
CTTTCTTTCTTTTTTTT
Found at i:14448769 original size:14 final size:14
Alignment explanation
Indices: 14448743--14448776 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
14448733 GACTTTCTCC
14448743 TTTC-TTCTTTCTT
1 TTTCTTTCTTTCTT
14448756 TTTCTTTCTTTCTT
1 TTTCTTTCTTTCTT
14448770 TTT-TTTC
1 TTTCTTTC
14448777 CAATTTGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTCTTTCTTTCTT
Found at i:14450746 original size:50 final size:50
Alignment explanation
Indices: 14450675--14450859 Score: 361
Period size: 50 Copynumber: 3.7 Consensus size: 50
14450665 ACATGCCAAA
14450675 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
14450725 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
14450775 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
*
14450825 GCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
14450860 TTACCCAAAT
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 134 1.00
ACGTcount: A:0.17, C:0.33, G:0.24, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
Found at i:14450975 original size:13 final size:13
Alignment explanation
Indices: 14450954--14450985 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14450944 GCTTGGATCA
*
14450954 TCATCAAATAAAT
1 TCATAAAATAAAT
14450967 TCATAAAATAAAT
1 TCATAAAATAAAT
14450980 TCATAA
1 TCATAA
14450986 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:14451233 original size:30 final size:30
Alignment explanation
Indices: 14451197--14451254 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
14451187 CCTCGACTCT
*
14451197 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
14451227 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
14451255 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:14457924 original size:25 final size:25
Alignment explanation
Indices: 14457886--14457938 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
14457876 AAATTACTGC
* * * *
14457886 TTTGTTGTTGTTTTTTTTTTATTGT
1 TTTGTTGCTATTTTCTTGTTATTGT
*
14457911 TTTGTTGCTATTTTCTTGTTATTTT
1 TTTGTTGCTATTTTCTTGTTATTGT
14457936 TTT
1 TTT
14457939 ATATTTTGTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.06, C:0.04, G:0.13, T:0.77
Consensus pattern (25 bp):
TTTGTTGCTATTTTCTTGTTATTGT
Found at i:14471752 original size:21 final size:21
Alignment explanation
Indices: 14471728--14471799 Score: 85
Period size: 20 Copynumber: 3.4 Consensus size: 21
14471718 TTAACTTTAC
14471728 ATCTCAAAAAATTATAAAAAA
1 ATCTCAAAAAATTATAAAAAA
14471749 ATCT-AAAAAA-TATATAAAAA
1 ATCTCAAAAAATTATA-AAAAA
* *
14471769 AGCTTAAAAAATATATAAAAAA
1 ATCTCAAAAAAT-TATAAAAAA
*
14471791 AACTCAAAA
1 ATCTCAAAA
14471800 CCCTTCACAA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
19 4 0.09
20 14 0.32
21 10 0.23
22 12 0.27
23 4 0.09
ACGTcount: A:0.68, C:0.08, G:0.01, T:0.22
Consensus pattern (21 bp):
ATCTCAAAAAATTATAAAAAA
Found at i:14471924 original size:19 final size:19
Alignment explanation
Indices: 14471873--14471924 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 19
14471863 CCTAACTCTA
* *
14471873 AAAAAAATCAAAATCATTT
1 AAAAAAACCAAAATTATTT
* *
14471892 TAAAAAACC-CAATTATTT
1 AAAAAAACCAAAATTATTT
*
14471910 AAAAAAACCAGAATT
1 AAAAAAACCAAAATT
14471925 TTCAGAAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
18 15 0.58
19 11 0.42
ACGTcount: A:0.60, C:0.13, G:0.02, T:0.25
Consensus pattern (19 bp):
AAAAAAACCAAAATTATTT
Found at i:14482175 original size:22 final size:23
Alignment explanation
Indices: 14482149--14482194 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
14482139 ATGCATTAAA
14482149 ATATTTACA-AAATTTTATTTTT
1 ATATTTACATAAATTTTATTTTT
* **
14482171 ATATTTTCATTCATTTTATTTTT
1 ATATTTACATAAATTTTATTTTT
14482194 A
1 A
14482195 AGATTTAGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (23 bp):
ATATTTACATAAATTTTATTTTT
Found at i:14482210 original size:24 final size:23
Alignment explanation
Indices: 14482160--14482210 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 23
14482150 TATTTACAAA
* *
14482160 ATTTTATTTTTATATTTTCATTC
1 ATTTTATTTTTAGATTTACATTC
* *
14482183 ATTTTATTTTTAAGATTTAGATTT
1 ATTTTATTTTT-AGATTTACATTC
14482207 ATTT
1 ATTT
14482211 ATTAATCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (23 bp):
ATTTTATTTTTAGATTTACATTC
Found at i:14487490 original size:25 final size:24
Alignment explanation
Indices: 14487452--14487499 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
14487442 ATTTGGGCTT
14487452 TATAACGAGAAGCTCACAAAGAGCC
1 TATAACGAGAAGCTC-CAAAGAGCC
* * *
14487477 TATAACGGGTAGCTCCGAAGAGC
1 TATAACGAGAAGCTCCAAAGAGC
14487500 AATTAATGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.38, C:0.23, G:0.25, T:0.15
Consensus pattern (24 bp):
TATAACGAGAAGCTCCAAAGAGCC
Found at i:14487578 original size:24 final size:24
Alignment explanation
Indices: 14487470--14487581 Score: 145
Period size: 24 Copynumber: 4.7 Consensus size: 24
14487460 GAAGCTCACA
*
14487470 AAGAGC-CTATAACGGGTAGCTCCG
1 AAGAGCACT-TAACGGGTAGCTTCG
* * *
14487494 AAGAGCAATTAATGGGTAGCTTTG
1 AAGAGCACTTAACGGGTAGCTTCG
* * *
14487518 AAGAGCAATTAATGGGTAGCTTCA
1 AAGAGCACTTAACGGGTAGCTTCG
14487542 AAGAGCACTTAACGGGTAGCTTCG
1 AAGAGCACTTAACGGGTAGCTTCG
14487566 AAGAGCACTTAACGGG
1 AAGAGCACTTAACGGG
14487582 AAGCACCGGA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
24 77 0.99
25 1 0.01
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (24 bp):
AAGAGCACTTAACGGGTAGCTTCG
Found at i:14487614 original size:72 final size:73
Alignment explanation
Indices: 14487468--14487624 Score: 158
Period size: 72 Copynumber: 2.2 Consensus size: 73
14487458 GAGAAGCTCA
* * *** *
14487468 CAAAGAGC-CTATAACGGGTAGCTCCGAAGAGCAATTAATGGGTAGCTTTGAAGAGCAATTAATG
1 CAAAGAGCACTATAACGGGTAGCTCCGAAGAGCAATTAACGGGAAGCACCGAAGAGCAATTAATA
*
14487532 GGTAGCTT
66 GGAAGCTT
* * * * *
14487540 CAAAGAGCACT-TAACGGGTAGCTTCGAAGAGCACTTAACGGGAAGCACCGGATAGCCATATAAT
1 CAAAGAGCACTATAACGGGTAGCTCCGAAGAGCAATTAACGGGAAGCACCGAAGAGCAAT-TAAT
14487604 AGGAAG-TT
65 AGGAAGCTT
*
14487612 CAAGTGAGCACTA
1 CAA-AGAGCACTA
14487625 ATGGGAAGCT
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
72 51 0.75
73 17 0.25
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (73 bp):
CAAAGAGCACTATAACGGGTAGCTCCGAAGAGCAATTAACGGGAAGCACCGAAGAGCAATTAATA
GGAAGCTT
Found at i:14487679 original size:27 final size:26
Alignment explanation
Indices: 14487623--14487696 Score: 78
Period size: 27 Copynumber: 2.8 Consensus size: 26
14487613 AAGTGAGCAC
***
14487623 TAATGGGAAGCTCAAGAAGAGCCTTT
1 TAATGGGAAGCTCAAGAAGAGCCCCA
*
14487649 TAATCGGGAAGCTCACGAAGAGCCCCA
1 TAAT-GGGAAGCTCAAGAAGAGCCCCA
* *
14487676 TAATGGGACGCT-AATAAGAGC
1 TAATGGGAAGCTCAAGAAGAGC
14487697 TGTGGTGTGC
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
25 7 0.17
26 11 0.28
27 22 0.55
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
TAATGGGAAGCTCAAGAAGAGCCCCA
Found at i:14492504 original size:21 final size:22
Alignment explanation
Indices: 14492480--14492524 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
14492470 AGAAAAAGAG
14492480 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
14492501 AAATCAAAAAGGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
14492523 AA
1 AA
14492525 CAATTTGCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:14495237 original size:111 final size:109
Alignment explanation
Indices: 14495037--14495342 Score: 440
Period size: 111 Copynumber: 2.8 Consensus size: 109
14495027 AAGGAAAATG
* * *
14495037 TTTTAAAATAAGGCAATATTTCGCGTTTGGGAAATTCGAGAAAACATTCCCTAAGGTGCTGGGTG
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
** * *
14495102 TTGATTTTTCTCGTCCAACCAAATGGCTTAATATCCTTTTAAAAC
66 TTGA-TTTTCTCGTTAAACCAAATGGCTTAATATCCTTCTAAAAA
14495147 TTTTAAGAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGT
1 TTTTAA-AATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGT
14495212 GTTGATTTTCCTCGTTAAACCAAATGGCTTAATATCCTTCTAAAAA
65 GTTGATTTT-CTCGTTAAACCAAATGGCTTAATATCCTTCTAAAAA
* * * *
14495258 TTTCAAAATAAGGCAATGTTTTGCATTT-GGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGT-
1 TTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
*
14495320 TTCGA-TTTCTCGTTTAACCAAAT
66 TT-GATTTTCTCGTTAAACCAAAT
14495343 TGTCAAATAT
Statistics
Matches: 181, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
106 14 0.08
107 5 0.03
108 23 0.13
109 11 0.06
110 31 0.17
111 97 0.54
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (109 bp):
TTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
TTGATTTTCTCGTTAAACCAAATGGCTTAATATCCTTCTAAAAA
Found at i:14500425 original size:35 final size:35
Alignment explanation
Indices: 14500225--14500425 Score: 253
Period size: 35 Copynumber: 5.8 Consensus size: 35
14500215 AAATGATACA
* *
14500225 TGAACAGGAGAGATTCCCTGCAACAACATAATGCA
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
* * * *
14500260 TGAACATGAGAGATTCCCTGCAA-GAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
14500294 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
** * * * *
14500329 TGAACAACAGAGATCCCCTGCAA-GAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
*
14500363 TGAACATGAGAGATTCCCTGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
* *
14500398 TGAACAGGAAATATTCCCTGCAACAAAA
1 TGAACAGGAGAGATTCCCTGCAACAAAA
14500426 GACAAGTGAA
Statistics
Matches: 139, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
34 56 0.40
35 83 0.60
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.19
Consensus pattern (35 bp):
TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
Found at i:14500435 original size:69 final size:69
Alignment explanation
Indices: 14500225--14500420 Score: 311
Period size: 69 Copynumber: 2.8 Consensus size: 69
14500215 AAATGATACA
* * *
14500225 TGAACAGGAGAGATTCCCTGCAACAACATAATGCATGAACATGAGAGATTCCCTGCAAGAAATGA
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAAGAGAGATTCCCTGCAAGAAATGA
14500290 TGTG
66 TGTG
* *
14500294 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAACAGAGATCCCCTGCAAGAAATGA
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAAGAGAGATTCCCTGCAAGAAATGA
14500359 TGTG
66 TGTG
* * * *
14500363 TGAACATGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAAATATTCCCTGCAA
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAAGAGAGATTCCCTGCAA
14500421 CAAAAGACAA
Statistics
Matches: 116, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 116 1.00
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (69 bp):
TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAAGAGAGATTCCCTGCAAGAAATGA
TGTG
Found at i:14505016 original size:20 final size:19
Alignment explanation
Indices: 14504968--14505014 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
14504958 AGTAACTCAG
14504968 AAAATTTTTCGCAAAATTT
1 AAAATTTTTCGCAAAATTT
14504987 AAAATTTTTCGCAAAATTT
1 AAAATTTTTCGCAAAATTT
14505006 AAAATTTTT
1 AAAATTTTT
14505015 TCTAAGGTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.45
Consensus pattern (19 bp):
AAAATTTTTCGCAAAATTT
Found at i:14506332 original size:24 final size:24
Alignment explanation
Indices: 14506280--14506379 Score: 130
Period size: 24 Copynumber: 4.1 Consensus size: 24
14506270 CCGAGCATAA
* *
14506280 TAACGGGAAGCTCACAAAGAGC-CT
1 TAACGGGTAGCTC-CGAAGAGCACT
** *
14506304 ATAACGGGTAGCTTTGAAGAGCAAT
1 -TAACGGGTAGCTCCGAAGAGCACT
14506329 TAACGGGTAGCTCCGAAGAGCACT
1 TAACGGGTAGCTCCGAAGAGCACT
14506353 TAACGGGTAGCTCCGAAGAGCACT
1 TAACGGGTAGCTCCGAAGAGCACT
14506377 TAA
1 TAA
14506380 TGGGAAGCAT
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
24 54 0.82
25 12 0.18
ACGTcount: A:0.34, C:0.21, G:0.27, T:0.18
Consensus pattern (24 bp):
TAACGGGTAGCTCCGAAGAGCACT
Found at i:14506358 original size:48 final size:49
Alignment explanation
Indices: 14506280--14506448 Score: 154
Period size: 48 Copynumber: 3.5 Consensus size: 49
14506270 CCGAGCATAA
**
14506280 TAACGGGAAGCTCACAAAGAGCCTATAACGGGTAGCTTTGAAGAGCAAT
1 TAACGGGAAGCTCACAAAGAGCCTATAACGGGTAGCTCCGAAGAGCAAT
* * *
14506329 TAACGGGTAGCTC-CGAAGAGCACT-TAACGGGTAGCTCCGAAGAGCACT
1 TAACGGGAAGCTCACAAAGAGC-CTATAACGGGTAGCTCCGAAGAGCAAT
* * * * *
14506377 TAATGGGAAG--CATCAAATAGCCATATAACGGGAAG-TTC-AAGCGAGC-AC
1 TAACGGGAAGCTCA-CAAAGAGCC-TATAACGGGTAGCTCCGAA--GAGCAAT
14506425 TAACGGGAAGCTCACAAAGAGCCT
1 TAACGGGAAGCTCACAAAGAGCCT
14506449 TTAGTCTGGA
Statistics
Matches: 96, Mismatches: 15, Indels: 19
0.74 0.12 0.15
Matches are distributed among these distances:
46 1 0.01
47 3 0.03
48 55 0.57
49 35 0.36
50 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.27, T:0.17
Consensus pattern (49 bp):
TAACGGGAAGCTCACAAAGAGCCTATAACGGGTAGCTCCGAAGAGCAAT
Found at i:14509912 original size:23 final size:23
Alignment explanation
Indices: 14509886--14509960 Score: 116
Period size: 23 Copynumber: 3.3 Consensus size: 23
14509876 ATAAGTGCCA
14509886 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
14509909 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
14509931 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
14509954 CACTGAT
1 CACTGAT
14509961 CAATAACACT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
22 20 0.43
23 26 0.57
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:14517268 original size:23 final size:23
Alignment explanation
Indices: 14517242--14517316 Score: 116
Period size: 23 Copynumber: 3.3 Consensus size: 23
14517232 ATAAGTGCAA
14517242 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
14517265 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
14517287 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
14517310 CACTGAT
1 CACTGAT
14517317 CAATAACACT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
22 20 0.43
23 26 0.57
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:14520446 original size:12 final size:12
Alignment explanation
Indices: 14520429--14520458 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14520419 ACAAAATTCG
14520429 AATTTAATTTCC
1 AATTTAATTTCC
*
14520441 AATTTAATTTCT
1 AATTTAATTTCC
14520453 AATTTA
1 AATTTA
14520459 TTTAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTTAATTTCC
Found at i:14524833 original size:17 final size:15
Alignment explanation
Indices: 14524811--14524849 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
14524801 ATTTATATAC
*
14524811 TATTTTAAATATTATTT
1 TATTTTAAA-ATT-TTA
14524828 TATTTTAAAATTTTA
1 TATTTTAAAATTTTA
14524843 TATTTTA
1 TATTTTA
14524850 GAGAGACAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
16 3 0.14
17 9 0.43
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTTTAAAATTTTA
Found at i:14525347 original size:26 final size:25
Alignment explanation
Indices: 14525290--14525350 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
14525280 AAAAAAAATC
*
14525290 TATAAATAATAATTTATTTAAATAT
1 TATAAATAATAATTAATTTAAATAT
* * *
14525315 AAGTAAATATTAATTAATTGTAATTAT
1 TA-TAAATAATAATTAATT-TAAATAT
14525342 TATAAATAA
1 TATAAATAA
14525351 GTGTTAATAA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
25 1 0.04
26 20 0.71
27 7 0.25
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.44
Consensus pattern (25 bp):
TATAAATAATAATTAATTTAAATAT
Found at i:14532854 original size:50 final size:50
Alignment explanation
Indices: 14532800--14532940 Score: 147
Period size: 50 Copynumber: 2.8 Consensus size: 50
14532790 TGTGATGTCG
* * * * *
14532800 GGGAAGCAAGATTCGCCATTGTAACTTCAATCTGTTCCCCTACACCGTCA
1 GGGAAGAAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACAACGTCA
* * ** * ** * *
14532850 GGGAAGTATGATTCGTTGTTGTAGCTTCAATCTTTTTAACTACAATGTCG
1 GGGAAGAAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACAACGTCA
*
14532900 GGGAAGAAAGATTCGCCGTTGTAGCTTAAATCTGTTCCACT
1 GGGAAGAAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACT
14532941 GCATCGTCTA
Statistics
Matches: 70, Mismatches: 21, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
50 70 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (50 bp):
GGGAAGAAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACAACGTCA
Found at i:14532955 original size:50 final size:49
Alignment explanation
Indices: 14532801--14532961 Score: 144
Period size: 50 Copynumber: 3.2 Consensus size: 49
14532791 GTGATGTCGG
* * * * *
14532801 GGAAGCAAGATTCGCCATTGTAACTTCAATCTGTTCCCCTACACCGTCA
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACATCGTCA
* ** * ** *
14532850 GGGAAGTATGATTCGTTGTTGTAGCTTCAATCTTTTTAACTACAAT-GTCGG
1 -GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTAC-ATCGTC-A
* * *
14532901 GGAAGAAAGATTCGCCGTTGTAGCTTAAATCTGTTCCACTGCATCGTCTA
1 GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACATCGTC-A
14532951 GGAAGTAAGAT
1 GGAAGTAAGAT
14532962 CTGATGCGAT
Statistics
Matches: 84, Mismatches: 24, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
49 2 0.02
50 81 0.96
51 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (49 bp):
GGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTACATCGTCA
Found at i:14533259 original size:44 final size:44
Alignment explanation
Indices: 14532970--14533743 Score: 199
Period size: 44 Copynumber: 17.7 Consensus size: 44
14532960 ATCTGATGCG
* * * *
14532970 ATCTACTCTACTGCAACCTCAGAGAGATAAGATCTATTATTTGA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTATTTGA
* * * * **** *
14533014 ATCCGCTCGACTGTAACTTCAGGGAGATAGGAT-TAGTGGCCTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTA-TTATTTGA
* * * ** *
14533058 ATTTACTCCACTACAAAC-TCAGGGAGATAAGAT-TCACCATATTCA
1 ATCTGCTCCACTGC-AACTTCAGGGAGATAAGATCT-ATTAT-TTGA
* * * *
14533103 GTCTGCCCCACAGCAACTTCAGGGGGATAAGA-CTTGATT-TCTTG-
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATC-T-ATTAT-TTGA
* * * * * **
14533147 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-CTGATGCG-
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTATTTGA
** ** *
14533188 ATCCACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATTTGA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTATTTGA
* * *** *
14533232 ATCTGCTCCACTGTAACTTCAGGGAGATAGGAT-TACTGGCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTA-TTATTTGA
* * ** *
14533276 ATTTGCTCCACTGCAAAC-TCAAGGAGATAAGAT-TCACCATCTTCA
1 ATCTGCTCCACTGC-AACTTCAGGGAGATAAGATCT-ATTAT-TTGA
* * * *
14533321 GTCTACCCCACTGCAACTTCAGGGGGATAAGACTTGCT-TTA-TTG-
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-CTATTATTTGA
* * * * **
14533365 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-CTTATGCG-
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTATTTGA
** ** * * *
14533406 ATCCACTGTACTGCAAATTCAGAGAGAGAAGATCTATTATTTGA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTATTTGA
* * *** *
14533450 ATTTGCTCTACTGCAACTTCAGGGAGATAAGAT-TACTGGCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTA-TTATTTGA
* * ** *
14533494 ATCTGCTCCACTACAAAC-TCAGGGAGAAAAG-TAGGATTACTGGCTTCA
1 ATCTGCTCCACTGC-AACTTCAGGGAGATAAGAT-CTATTA-T---TTGA
* * ** *
14533542 ATCTGCTCCACTACAAAC-TCAGGGAGAAAAGAT-TCACCATCTTCA
1 ATCTGCTCCACTGC-AACTTCAGGGAGATAAGATCT-ATTAT-TTGA
* * * *
14533587 GTCTG-TCCCACTGTAACTTCAGGGGGATAA-A-CT-TGCT-TTCTCA
1 ATCTGCT-CCACTGCAACTTCAGGGAGATAAGATCTAT--TATT-TGA
* * * *
14533630 GTCTGCTCCGCTGCAACCTT-AGGGAGATAAGA-CT-TGATGTG-
1 ATCTGCTCCACTGCAA-CTTCAGGGAGATAAGATCTATTATTTGA
* * * * *
14533671 ATCTACTCTACTGCAACTTTAGAGAGATAAGATCTATTATTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTATTTGA
** * *
14533715 ATCCACTCTACTGCAACTTCAGAGAGATA
1 ATCTGCTCCACTGCAACTTCAGGGAGATA
14533744 GGATTACTGT
Statistics
Matches: 533, Mismatches: 148, Indels: 98
0.68 0.19 0.13
Matches are distributed among these distances:
40 7 0.01
41 74 0.14
42 7 0.01
43 46 0.09
44 264 0.50
45 91 0.17
46 2 0.00
47 3 0.01
48 37 0.07
49 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTATTTGA
Found at i:14533340 original size:218 final size:218
Alignment explanation
Indices: 14532956--14533520 Score: 905
Period size: 218 Copynumber: 2.6 Consensus size: 218
14532946 GTCTAGGAAG
* * * *
14532956 TAAGATCTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATCTATTATTTGAATCCGCT
1 TAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCTGCT
* * * *
14533021 CGACTGTAACTTCAGGGAGATAGGATTAGTGGCCTCAATTTACTCCACTACAAACTCAGGGAGAT
66 CCACTGTAACTTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCACTACAAACTCAGGGAGAT
* *
14533086 AAGATTCACCATATTCAGTCTGCCCCACAGCAACTTCAGGGGGATAAGACTTGATTTCTTGGTCT
131 AAGATTCACCATATTCAGTCTACCCCACAGCAACTTCAGGGGGATAAGACTTGATTTATTGGTCT
14533151 GCTCCGCTGCAACCTCAGGGAGA
196 GCTCCGCTGCAACCTCAGGGAGA
*
14533174 TAAGACCTGATGCGATCCACTCTGCTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCTGCT
1 TAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCTGCT
* *
14533239 CCACTGTAACTTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCACTGCAAACTCAAGGAGAT
66 CCACTGTAACTTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCACTACAAACTCAGGGAGAT
* * *
14533304 AAGATTCACCATCTTCAGTCTACCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTATTGGTCT
131 AAGATTCACCATATTCAGTCTACCCCACAGCAACTTCAGGGGGATAAGACTTGATTTATTGGTCT
14533369 GCTCCGCTGCAACCTCAGGGAGA
196 GCTCCGCTGCAACCTCAGGGAGA
* * * * *
14533392 TAAGACCTTATGCGATCCACTGTACTGCAAATTCAGAGAGAGAAGATCTATTATTTGAATTTGCT
1 TAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCTGCT
* * * *
14533457 CTACTGCAACTTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCACTACAAACTCAGGGAGA
66 CCACTGTAACTTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCACTACAAACTCAGGGAGA
14533521 AAAGTAGGAT
Statistics
Matches: 319, Mismatches: 28, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
218 319 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.27
Consensus pattern (218 bp):
TAAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCTGCT
CCACTGTAACTTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCACTACAAACTCAGGGAGAT
AAGATTCACCATATTCAGTCTACCCCACAGCAACTTCAGGGGGATAAGACTTGATTTATTGGTCT
GCTCCGCTGCAACCTCAGGGAGA
Found at i:14533541 original size:48 final size:48
Alignment explanation
Indices: 14533480--14533572 Score: 186
Period size: 48 Copynumber: 1.9 Consensus size: 48
14533470 AGGGAGATAA
14533480 GATTACTGGCTTCAATCTGCTCCACTACAAACTCAGGGAGAAAAGTAG
1 GATTACTGGCTTCAATCTGCTCCACTACAAACTCAGGGAGAAAAGTAG
14533528 GATTACTGGCTTCAATCTGCTCCACTACAAACTCAGGGAGAAAAG
1 GATTACTGGCTTCAATCTGCTCCACTACAAACTCAGGGAGAAAAG
14533573 ATTCACCATC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (48 bp):
GATTACTGGCTTCAATCTGCTCCACTACAAACTCAGGGAGAAAAGTAG
Found at i:14533729 original size:265 final size:262
Alignment explanation
Indices: 14533188--14533762 Score: 780
Period size: 265 Copynumber: 2.2 Consensus size: 262
14533178 ACCTGATGCG
* * * * **
14533188 ATCCACTCTGCTGCAACTTCAGAGAGATAAGATCTA-TTATTTGAATCTGCTCCACTGTAACTTC
1 ATCCACTCTACTGCAACTTCAGAGAGATAAGAT-TACTGACTTCAATCTGCTCCACTCAAACTTC
* * *
14533252 AGGGAGATAGGATTACTGGCTTCAATTTGCTCCACTGCAAACTCAAGGAGATAAGATTCACCATC
65 AGGGAGATAGGATTACTGGCTTCAATCTGCTCCACTACAAACTCAAGGAGAAAAGATTCACCATC
**
14533317 TTCAGTCTACCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTATTGGTCTGCTCCGCTGCAAC
130 TTCAGTCTACCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTATCAGTCTGCTCCGCTGCAAC
*
14533382 CTCAGGGAGATAAGACCTTATGCGATCCACTGTACTGCAAATTCAGAGAGAGAAGATCTATTATT
195 CTCAGGGAGATAAGACCTTATGCGATCCACTCTACTGCAAATTCAGAGAGAGAAGATCTATTATT
14533447 TGA
260 TGA
*** * *
14533450 ATTTGCTCTACTGCAACTTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCACTACAAAC-TC
1 ATCCACTCTACTGCAACTTCAGAGAGATAAGATTACTGACTTCAATCTGCTCCACT-CAAACTTC
*
14533514 AGGGAGAAAAGTAGGATTACTGGCTTCAATCTGCTCCACTACAAACTCAGGGAGAAAAGATTCAC
65 AGGGAG---A-TAGGATTACTGGCTTCAATCTGCTCCACTACAAACTCAAGGAGAAAAGATTCAC
** * *
14533579 CATCTTCAGTCTGTCCCACTGTAACTTCAGGGGGATAA-ACTTGCTTTCTCAGTCTGCTCCGCTG
126 CATCTTCAGTCTACCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTATCAGTCTGCTCCGCTG
* * * * * *
14533643 CAACCTTAGGGAGATAAGA-CTTGATGTGATCTACTCTACTGCAACTTTAGAGAGATAAGATCTA
191 CAACCTCAGGGAGATAAGACCTT-ATGCGATCCACTCTACTGCAAATTCAGAGAGAGAAGATCTA
*
14533707 TTATTTTA
255 TTATTTGA
* *
14533715 ATCCACTCTACTGCAACTTCAGAGAGATAGGATTACTGTCTTCAATCT
1 ATCCACTCTACTGCAACTTCAGAGAGATAAGATTACTGACTTCAATCT
14533763 ATTTAATTGC
Statistics
Matches: 271, Mismatches: 35, Indels: 11
0.85 0.11 0.03
Matches are distributed among these distances:
261 2 0.01
262 52 0.19
263 3 0.01
264 3 0.01
265 126 0.46
266 85 0.31
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (262 bp):
ATCCACTCTACTGCAACTTCAGAGAGATAAGATTACTGACTTCAATCTGCTCCACTCAAACTTCA
GGGAGATAGGATTACTGGCTTCAATCTGCTCCACTACAAACTCAAGGAGAAAAGATTCACCATCT
TCAGTCTACCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTATCAGTCTGCTCCGCTGCAACC
TCAGGGAGATAAGACCTTATGCGATCCACTCTACTGCAAATTCAGAGAGAGAAGATCTATTATTT
GA
Found at i:14533840 original size:49 final size:50
Alignment explanation
Indices: 14533781--14534016 Score: 219
Period size: 49 Copynumber: 4.8 Consensus size: 50
14533771 GCAATGTTGG
*
14533781 GGAAACAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCACT-TCCA
1 GGAAACAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCAATATCCA
* * * * ** * *
14533830 GGAAATAAGATTCGCTGTTGTAACTTTAATCT-TT-AACTATAATGTCGA
1 GGAAACAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCAATATCCA
* * * * *
14533878 GGAAGCAATATTGGCCGTTGTGGCTTTAATCTGTTCCACTGCACTA-CCA
1 GGAAACAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCAATATCCA
* * * * ** *
14533927 GGAAATAAGATTCGCTGTTGTAGCTTTAATATTTTTAACTGCAATATCGA
1 GGAAACAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCAATATCCA
* * * *
14533977 GGAAGCGAGATTTGCCGTTGTGGCTTTAATCTGTTCCACT
1 GGAAACAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACT
14534017 ACACCGCCTG
Statistics
Matches: 140, Mismatches: 43, Indels: 7
0.74 0.23 0.04
Matches are distributed among these distances:
47 5 0.04
48 30 0.21
49 68 0.49
50 37 0.26
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.34
Consensus pattern (50 bp):
GGAAACAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCAATATCCA
Found at i:14533895 original size:97 final size:99
Alignment explanation
Indices: 14533781--14534016 Score: 350
Period size: 97 Copynumber: 2.4 Consensus size: 99
14533771 GCAATGTTGG
* * * *
14533781 GGAAACAAGATTCGCCGTTGTAGCTTTAATCTGTTCCACTGCACTTCCAGGAAATAAGATTCGCT
1 GGAAGCAAGATTGGCCGTTGTGGCTTTAATCTGTTCCACTGCACTACCAGGAAATAAGATTCGCT
* *
14533846 GTTGTAACTTT-A-ATCTTTAACTATAATGTCGA
66 GTTGTAACTTTAATATCTTTAACTACAATATCGA
*
14533878 GGAAGCAATATTGGCCGTTGTGGCTTTAATCTGTTCCACTGCACTACCAGGAAATAAGATTCGCT
1 GGAAGCAAGATTGGCCGTTGTGGCTTTAATCTGTTCCACTGCACTACCAGGAAATAAGATTCGCT
* * *
14533943 GTTGTAGCTTTAATATTTTTAACTGCAATATCGA
66 GTTGTAACTTTAATATCTTTAACTACAATATCGA
* *
14533977 GGAAGCGAGATTTGCCGTTGTGGCTTTAATCTGTTCCACT
1 GGAAGCAAGATTGGCCGTTGTGGCTTTAATCTGTTCCACT
14534017 ACACCGCCTG
Statistics
Matches: 124, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
97 70 0.56
98 1 0.01
99 53 0.43
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.34
Consensus pattern (99 bp):
GGAAGCAAGATTGGCCGTTGTGGCTTTAATCTGTTCCACTGCACTACCAGGAAATAAGATTCGCT
GTTGTAACTTTAATATCTTTAACTACAATATCGA
Found at i:14534104 original size:44 final size:44
Alignment explanation
Indices: 14534056--14534240 Score: 114
Period size: 44 Copynumber: 4.2 Consensus size: 44
14534046 GTCGATCTAC
*
14534056 TCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTAT
1 TCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTAT
* * ** * * *
14534100 TCCACTGCTGAC-CAGGGAGATAAGA-CTTGT-GGCTTAAATCTGCT
1 TCCACTACTG-CTTAGGGAGATAAGATC-TGTAATCTTCAACCT-AT
* * *** * * **
14534144 TCC-CTACT-CCTGGGGAAGATAAGAT-TCGCCGTCTTCGATCTGC
1 TCCACTACTGCTTAGGG-AGATAAGATCT-GTAATCTTCAACCTAT
14534187 TCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTCCAACCTAT
1 TCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT-CAACCTAT
14534231 TCCACTACTG
1 TCCACTACTG
14534241 ACCAGGGAGA
Statistics
Matches: 103, Mismatches: 26, Indels: 24
0.67 0.17 0.16
Matches are distributed among these distances:
41 1 0.01
42 4 0.04
43 25 0.24
44 66 0.64
45 7 0.07
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
TCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTAT
Found at i:14534190 original size:131 final size:131
Alignment explanation
Indices: 14534026--14534377 Score: 609
Period size: 131 Copynumber: 2.7 Consensus size: 131
14534016 TACACCGCCT
** *
14534026 GGGAAG-TAAGATTCGCTAT-TGTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
1 GGGAAGATAAGATTCGCCGTCT-TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
* *
14534089 TTTCAACCTATTCCACTGCTGACCAGGGAGATAAGACTTGTGGCTTAAATCTGCTTCCCTACTCC
65 TTCCAACCTATTCCACTACTGACCAGGGAGATAAGACTTGTGGCTTAAATCTGCTTCCCTACTCC
14534154 TG
130 TG
14534156 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATT
1 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATT
*
14534221 TCCAACCTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCCT
66 TCCAACCTATTCCACTACTGACCAGGGAGATAAGACTTGTGGCTTAAATCTGCTTCCCTACTCCT
14534286 G
131 G
* *
14534287 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTTCTTAGGGAGATAAGATCTGTAATT
1 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATT
14534352 TCCAACCTATTCCACTACTGACCAGG
66 TCCAACCTATTCCACTACTGACCAGG
14534378 CTGTAATTTT
Statistics
Matches: 212, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
130 6 0.03
131 205 0.97
132 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (131 bp):
GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATT
TCCAACCTATTCCACTACTGACCAGGGAGATAAGACTTGTGGCTTAAATCTGCTTCCCTACTCCT
G
Found at i:14534382 original size:34 final size:34
Alignment explanation
Indices: 14534344--14534411 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
14534334 GAGATAAGAT
14534344 CTGTAATTTCCAACCTATTCCACTACTGACCAGG
1 CTGTAATTTCCAACCTATTCCACTACTGACCAGG
*
14534378 CTGTAATTTTCAACCTATTCCACTACTGACCAGG
1 CTGTAATTTCCAACCTATTCCACTACTGACCAGG
14534412 GAGATAGGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (34 bp):
CTGTAATTTCCAACCTATTCCACTACTGACCAGG
Found at i:14534491 original size:165 final size:165
Alignment explanation
Indices: 14534213--14534681 Score: 560
Period size: 165 Copynumber: 2.9 Consensus size: 165
14534203 GAGATAAGAT
*
14534213 CTGTAATTTCCAACCTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTGCTTCC
1 CTGTAATTTCCAACCTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTACTTCC
* *
14534278 CTACTCCTGGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTTCTTAGGGAGATAAGA
66 CTACTCCTAGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGA
*
14534343 TCTGTAATTTCCAACCTATTCCACTACTGACCAGG
131 TCTATAATTTCCAACCTATTCCACTACTGACCAGG
* * * *
14534378 CTGTAATTTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTTGTGGCTTAATTTTACTTCC
1 CTGTAATTTCCAACCTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTACTTCC
* *
14534443 CTACTCCTAGGGAAGATAAGATTCGTCGTCTTCGATCTGCTTCACTATTGCTTAGGGAGATAAGA
66 CTACTCCTAGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGA
* *
14534508 TCTATAATTTCCAACCTATTCCACTGCTGACCAAG
131 TCTATAATTTCCAACCTATTCCACTACTGACCAGG
*** ** *
14534543 --G-AGA--TAGGA-CT-TGT-GGCT--T----A---A-ATAGGACTTGTGGCTTAAATCTGCTT
1 CTGTA-ATTTCCAACCTAT-TCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTACTT
* * * *
14534590 CCCTACTCTTGGGGAAGATAAGATTCGTCGTCTTCGATCTGCTTCACTATTGCTTAGGGAGATAA
64 CCCTACTCCTAGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAA
* * * *
14534655 GATCTGTGATTTTCAATCTATTCCACT
129 GATCTATAATTTCCAACCTATTCCACT
14534682 GCTTCCCAGG
Statistics
Matches: 275, Mismatches: 27, Indels: 20
0.85 0.08 0.06
Matches are distributed among these distances:
149 108 0.39
150 1 0.00
153 1 0.00
157 1 0.00
159 3 0.01
160 3 0.01
161 2 0.01
162 1 0.00
163 2 0.01
165 153 0.56
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (165 bp):
CTGTAATTTCCAACCTATTCCACTACTGACCAGGGAGATAGGACTTGTGGCTTAAATCTACTTCC
CTACTCCTAGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGA
TCTATAATTTCCAACCTATTCCACTACTGACCAGG
Done.