Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 44 of 203
Found at i:14534569 original size:18 final size:18
Alignment explanation
Indices: 14534546--14534583 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
14534536 GACCAAGGAG
14534546 ATAGGACTTGTGGCTTAA
1 ATAGGACTTGTGGCTTAA
14534564 ATAGGACTTGTGGCTTAA
1 ATAGGACTTGTGGCTTAA
14534582 AT
1 AT
14534584 CTGCTTCCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.29, C:0.11, G:0.26, T:0.34
Consensus pattern (18 bp):
ATAGGACTTGTGGCTTAA
Found at i:14534695 original size:149 final size:149
Alignment explanation
Indices: 14534415--14534698 Score: 451
Period size: 149 Copynumber: 1.9 Consensus size: 149
14534405 GACCAGGGAG
* * *
14534415 ATAGGATTTGTGGCTTAATTTTACTTCCCTACTCCTAGGGAAGATAAGATTCGTCGTCTTCGATC
1 ATAGGACTTGTGGCTTAAATCTACTTCCCTACTCCTAGGGAAGATAAGATTCGTCGTCTTCGATC
14534480 TGCTTCACTATTGCTTAGGGAGATAAGATCTATAATTTCCAACCTATTCCACTGCTGACCAAGGA
66 TGCTTCACTATTGCTTAGGGAGATAAGATCTATAATTTCCAACCTATTCCACTGCTGACCAAGGA
14534545 GATAGGACTTGTGGCTTAA
131 GATAGGACTTGTGGCTTAA
* * *
14534564 ATAGGACTTGTGGCTTAAATCTGCTTCCCTACTCTTGGGGAAGATAAGATTCGTCGTCTTCGATC
1 ATAGGACTTGTGGCTTAAATCTACTTCCCTACTCCTAGGGAAGATAAGATTCGTCGTCTTCGATC
* * * * ** *
14534629 TGCTTCACTATTGCTTAGGGAGATAAGATCTGTGATTTTCAATCTATTCCACTGCTTCCCAGGGA
66 TGCTTCACTATTGCTTAGGGAGATAAGATCTATAATTTCCAACCTATTCCACTGCTGACCAAGGA
14534694 GATAG
131 GATAG
14534699 AATTCACCAT
Statistics
Matches: 122, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
149 122 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (149 bp):
ATAGGACTTGTGGCTTAAATCTACTTCCCTACTCCTAGGGAAGATAAGATTCGTCGTCTTCGATC
TGCTTCACTATTGCTTAGGGAGATAAGATCTATAATTTCCAACCTATTCCACTGCTGACCAAGGA
GATAGGACTTGTGGCTTAA
Found at i:14534714 original size:44 final size:44
Alignment explanation
Indices: 14534666--14534790 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 44
14534656 ATCTGTGATT
* *
14534666 TTCAATCTATTCCACTGCTTCCCAGGGAGATAGAATTCACCATC
1 TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCACAATC
* * * * * *
14534710 TTCAACCTATTCCGCTACTGACCAGGGAAATATG-ACTCACAATC
1 TTCAATCTATTCCACTGCTGCCCAGGGAGATA-GAATTCACAATC
* *
14534754 TTCAATCTATTCTACTGCTGCCTAGGGAGATAGAATT
1 TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATT
14534791 GGTATCTTCG
Statistics
Matches: 63, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
43 1 0.02
44 61 0.97
45 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (44 bp):
TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCACAATC
Found at i:14537199 original size:33 final size:30
Alignment explanation
Indices: 14537160--14537221 Score: 88
Period size: 33 Copynumber: 2.0 Consensus size: 30
14537150 CATTTTCATA
14537160 TTTTTTATTTTGACTTTGATTTTTTCTTTTTTG
1 TTTTTTATTTTGA-TTT--TTTTTTCTTTTTTG
*
14537193 TTTTTTATTTTGATTTTTTTTTGTTTTTT
1 TTTTTTATTTTGATTTTTTTTTCTTTTTT
14537222 CATTTTTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 12 0.43
32 3 0.11
33 13 0.46
ACGTcount: A:0.08, C:0.03, G:0.08, T:0.81
Consensus pattern (30 bp):
TTTTTTATTTTGATTTTTTTTTCTTTTTTG
Found at i:14537214 original size:18 final size:18
Alignment explanation
Indices: 14537174--14537230 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
14537164 TTATTTTGAC
14537174 TTTGATTTTTTC-TTTTTT
1 TTTG-TTTTTTCATTTTTT
* *
14537192 GTTTTTTATTTTGATTTTTT
1 -TTTGTT-TTTTCATTTTTT
14537212 TTTGTTTTTTCATTTTTT
1 TTTGTTTTTTCATTTTTT
14537230 T
1 T
14537231 GAATTGGATC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
18 14 0.44
19 12 0.38
20 6 0.19
ACGTcount: A:0.07, C:0.04, G:0.07, T:0.82
Consensus pattern (18 bp):
TTTGTTTTTTCATTTTTT
Found at i:14539181 original size:42 final size:42
Alignment explanation
Indices: 14539038--14539251 Score: 258
Period size: 42 Copynumber: 5.1 Consensus size: 42
14539028 TTTAAACAGA
* * * *
14539038 TTCACTGGCACTT-AGCCTGCTAGACTTAAAGCCTGAT-TCAG-
1 TTCACCGGCA-TTAAGCCTGCTAGACGTAAAGTCTGATAT-TGT
* * * *
14539079 TACACCGGCACTT-AGCCTGCTAGACATATAGTCTGA-AATGT
1 TTCACCGGCA-TTAAGCCTGCTAGACGTAAAGTCTGATATTGT
14539120 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
* * * *
14539162 TTCACCGGCATTAAACCTGCTAGACGTAAAGTTTGAAATTAT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
14539204 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
1 TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
14539246 TTCACC
1 TTCACC
14539252 TAAAATCTCA
Statistics
Matches: 150, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
40 3 0.02
41 61 0.41
42 86 0.57
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (42 bp):
TTCACCGGCATTAAGCCTGCTAGACGTAAAGTCTGATATTGT
Found at i:14544147 original size:19 final size:20
Alignment explanation
Indices: 14544107--14544150 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
14544097 ATTTCTTTTG
* *
14544107 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
14544126 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
14544145 GCATTA
1 GCATTA
14544151 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:14547035 original size:21 final size:21
Alignment explanation
Indices: 14546994--14547036 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
14546984 CACTTAAAAA
**
14546994 AAAAAGAAGAGAAAATTAATG
1 AAAAAGAAGAGAAAAAAAATG
14547015 AAAAAGAAGA-AAAGAAAAATG
1 AAAAAGAAGAGAAA-AAAAATG
14547036 A
1 A
14547037 GTAAAAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.09
Consensus pattern (21 bp):
AAAAAGAAGAGAAAAAAAATG
Found at i:14549940 original size:112 final size:112
Alignment explanation
Indices: 14549805--14550025 Score: 284
Period size: 113 Copynumber: 2.0 Consensus size: 112
14549795 AAAAATGTCG
* * * * * * *
14549805 TAAAAAATTATTTTATTTAGAATAAAACGATATTGTTTTGCTAT-AT-AAAATGACGTTAATTTT
1 TAAAAAATTATTTCATTCAGAATAAAACGACACTATTTTGCTATGATAAAAATCACGCT-ATTTT
* *
14549868 TTAAACTAAAATTACTTTTTGTGGCGTTTTTTATAAAAATGCCGCTAT
65 TTAAACTAAAACTACTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAT
* * *
14549916 TAAAAAATTTATTTCATTCGGAATAAAACGACACTATTTTGCTATGCTAAAAATCTCGCTATTTT
1 TAAAAAA-TTATTTCATTCAGAATAAAACGACACTATTTTGCTATGATAAAAATCACGCTATTTT
* *
14549981 TTAAAGTAAAACTATTTTTTGTGGCGTTTTTTATAAAAACGCCGC
65 TTAAACTAAAACTACTTTTTGTGGCGTTTTTTATAAAAACGCCGC
14550026 AAAAATTATT
Statistics
Matches: 93, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
111 7 0.08
112 31 0.33
113 47 0.51
114 8 0.09
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (112 bp):
TAAAAAATTATTTCATTCAGAATAAAACGACACTATTTTGCTATGATAAAAATCACGCTATTTTT
TAAACTAAAACTACTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAT
Found at i:14550329 original size:7 final size:7
Alignment explanation
Indices: 14550317--14550364 Score: 51
Period size: 7 Copynumber: 6.9 Consensus size: 7
14550307 ACCCTTGAAT
14550317 CCCTAAA
1 CCCTAAA
14550324 CCCTAAA
1 CCCTAAA
14550331 CCCTAAA
1 CCCTAAA
*
14550338 TCCTAAA
1 CCCTAAA
**
14550345 CTATAAA
1 CCCTAAA
**
14550352 CTTTAAA
1 CCCTAAA
14550359 CCCTAA
1 CCCTAA
14550365 CCCGACCCTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.23
Consensus pattern (7 bp):
CCCTAAA
Found at i:14550377 original size:62 final size:60
Alignment explanation
Indices: 14550293--14550495 Score: 239
Period size: 55 Copynumber: 3.5 Consensus size: 60
14550283 CTAATTAATC
14550293 TAAACCCTAACCCGACCCTTGAATCCCTAAACCCTAAACCCTAAATCCTAAACTATAAACTT
1 TAAACCCTAACCCGACCCTTGAATCCCTAAACCCTAAACCCTAAAT--TAAACTATAAACTT
* *
14550355 TAAACCCTAACCCGACCCTTGAATCCATAAACCCTAAA--C---ATTAAACTCTAAACTT
1 TAAACCCTAACCCGACCCTTGAATCCCTAAACCCTAAACCCTAAATTAAACTATAAACTT
* * *
14550410 TAAACCCTAACCCGACCCTTGAATCCCTAAATCCTAACCCCTAAA--ACAC--T-AACTCT
1 TAAACCCTAACCCGACCCTTGAATCCCTAAACCCTAAACCCTAAATTAAACTATAAACT-T
*
14550466 T-AACCCATAACCTGACCCTTGAATCCCTAA
1 TAAACCC-TAACCCGACCCTTGAATCCCTAA
14550496 TTCCTAACCC
Statistics
Matches: 127, Mismatches: 7, Indels: 20
0.82 0.05 0.13
Matches are distributed among these distances:
55 57 0.45
56 25 0.20
57 3 0.02
58 3 0.02
60 2 0.02
62 37 0.29
ACGTcount: A:0.37, C:0.36, G:0.04, T:0.23
Consensus pattern (60 bp):
TAAACCCTAACCCGACCCTTGAATCCCTAAACCCTAAACCCTAAATTAAACTATAAACTT
Found at i:14550391 original size:27 final size:27
Alignment explanation
Indices: 14550355--14550449 Score: 75
Period size: 27 Copynumber: 3.5 Consensus size: 27
14550345 CTATAAACTT
14550355 TAAACCCTAACCCGACCCTTGAATCCA
1 TAAACCCTAACCCGACCCTTGAATCCA
*** ** * **
14550382 TAAACCCTAAACATTAAACTCT-AAACTT
1 TAAACCCT-AACCCGACCCT-TGAATCCA
*
14550410 TAAACCCTAACCCGACCCTTGAATCCC
1 TAAACCCTAACCCGACCCTTGAATCCA
*
14550437 TAAATCCTAACCC
1 TAAACCCTAACCC
14550450 CTAAAACACT
Statistics
Matches: 48, Mismatches: 17, Indels: 6
0.68 0.24 0.08
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 17 0.35
29 1 0.02
ACGTcount: A:0.37, C:0.37, G:0.04, T:0.22
Consensus pattern (27 bp):
TAAACCCTAACCCGACCCTTGAATCCA
Found at i:14550405 original size:14 final size:14
Alignment explanation
Indices: 14550382--14550419 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
14550372 CTTGAATCCA
14550382 TAAACCCTAAACAT
1 TAAACCCTAAACAT
* *
14550396 TAAACTCTAAACTT
1 TAAACCCTAAACAT
14550410 TAAACCCTAA
1 TAAACCCTAA
14550420 CCCGACCCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAACCCTAAACAT
Found at i:14550490 original size:56 final size:54
Alignment explanation
Indices: 14550350--14550534 Score: 210
Period size: 56 Copynumber: 3.3 Consensus size: 54
14550340 CTAAACTATA
* * * * * *
14550350 AACTTTAAACCCTAACCCGACCCTTGAATCCATAAACCCTAA-ACATTAAACTCT
1 AACTTT-AACCCTAACCCGACCCTTGAATCCCTAAATCCTAACCCCTAAAACACT
14550404 AAACTTTAAACCCTAACCCGACCCTTGAATCCCTAAATCCTAACCCCTAAAACACT
1 -AACTTT-AACCCTAACCCGACCCTTGAATCCCTAAATCCTAACCCCTAAAACACT
* * * *
14550460 AACTCTTAACCCATAACCTGACCCTTGAATCCCTAATTCCTAACCCCTAGATCACT
1 AACT-TTAACCC-TAACCCGACCCTTGAATCCCTAAATCCTAACCCCTAAAACACT
14550516 AACTATTAACCCCTAACCC
1 AACT-TTAA-CCCTAACCC
14550535 CTAACTACTA
Statistics
Matches: 114, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
55 49 0.43
56 62 0.54
57 3 0.03
ACGTcount: A:0.36, C:0.37, G:0.04, T:0.24
Consensus pattern (54 bp):
AACTTTAACCCTAACCCGACCCTTGAATCCCTAAATCCTAACCCCTAAAACACT
Found at i:14550540 original size:21 final size:21
Alignment explanation
Indices: 14550499--14550552 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
14550489 TCCCTAATTC
*
14550499 CTAACCCCTAGATCACTAACTA
1 CTAACCCCTA-ACCACTAACTA
* *
14550521 TTAACCCCTAACCCCTAACTA
1 CTAACCCCTAACCACTAACTA
14550542 CTAACCCCTAA
1 CTAACCCCTAA
14550553 ACCTTAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 19 0.68
22 9 0.32
ACGTcount: A:0.35, C:0.41, G:0.02, T:0.22
Consensus pattern (21 bp):
CTAACCCCTAACCACTAACTA
Found at i:14550877 original size:8 final size:7
Alignment explanation
Indices: 14550805--14550882 Score: 52
Period size: 7 Copynumber: 10.9 Consensus size: 7
14550795 GTAGTTAATC
14550805 TAAACCT
1 TAAACCT
*
14550812 TAAACCA
1 TAAACCT
14550819 TAAA-CT
1 TAAACCT
14550825 TAAACCCT
1 TAAA-CCT
* *
14550833 AAAACCC
1 TAAACCT
*
14550840 TAAACTCA
1 TAAAC-CT
14550848 TAAACCT
1 TAAACCT
* *
14550855 TTAACACA
1 TAAAC-CT
14550863 T-AACCTT
1 TAAACC-T
14550870 TAAACCT
1 TAAACCT
14550877 TAAACC
1 TAAACC
14550883 CCAACTTTTG
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
6 6 0.11
7 32 0.58
8 17 0.31
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.24
Consensus pattern (7 bp):
TAAACCT
Found at i:14551262 original size:114 final size:114
Alignment explanation
Indices: 14551094--14551617 Score: 773
Period size: 114 Copynumber: 4.6 Consensus size: 114
14551084 AAAAAACTTT
* * * * ** *
14551094 AAAATGCCGCTAAATCCCCGAAAGCTTAG-AAACGGCACCGTTGGGCTTATGTTTTTTTGCGGCG
1 AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGCG
* * * *
14551158 CTTCCCCAAAAACGCCGCTAAAGACCTGAGCATTAGCGGCGCTTTCTTA
66 CTTTCCCAAAAACGCCACTAAAGACCTGAGCTTTAGCGGCGCTTCCTTA
* * * * * *
14551207 AAAACACCGCTAAATCCTCGAGAGCTCATAAAACGGCGTTGTTGGGCTTAGGTTTTTTTTCGGCG
1 AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGCG
* *
14551272 CTTTCCCAAAAACGCCACAAAAGACCTGAGCTTTAGCCGCGCTTCCTTA
66 CTTTCCCAAAAACGCCACTAAAGACCTGAGCTTTAGCGGCGCTTCCTTA
*
14551321 AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGTG
1 AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGCG
* *
14551386 CTTTCCCAAAAACACCACTAAAGACCTGATCTTTAGCGGCGCTTCCTTA
66 CTTTCCCAAAAACGCCACTAAAGACCTGAGCTTTAGCGGCGCTTCCTTA
* *
14551435 AAAACGCTGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGTG
1 AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGCG
* *
14551500 CTTTCCCAAAAACACCACTAAAGACCTGATCTTTAGCGGCGCTTCCTTA
66 CTTTCCCAAAAACGCCACTAAAGACCTGAGCTTTAGCGGCGCTTCCTTA
* * *
14551549 AAAACGCTGCTAAATCCCCGAGAGCTCATAAAACAACGTCGTTGGGCTTAGG-TTTTTTGCGGCG
1 AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGCG
14551613 CTTTC
66 CTTTC
14551618 TGGAAAACGC
Statistics
Matches: 378, Mismatches: 32, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
113 39 0.10
114 339 0.90
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (114 bp):
AAAACGCCGCTAAATCCCCGAGAGCTCAGAAAACGACGTCGTTGGGCTTAGGTTTTTTTGCGGCG
CTTTCCCAAAAACGCCACTAAAGACCTGAGCTTTAGCGGCGCTTCCTTA
Found at i:14552723 original size:17 final size:17
Alignment explanation
Indices: 14552688--14552720 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
14552678 TACGATTTGG
14552688 TTGAGAAACTTATTTAA
1 TTGAGAAACTTATTTAA
14552705 TTGAGAAA-TTATTTAA
1 TTGAGAAACTTATTTAA
14552721 ATTAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.42
Consensus pattern (17 bp):
TTGAGAAACTTATTTAA
Found at i:14553644 original size:84 final size:84
Alignment explanation
Indices: 14553499--14553665 Score: 257
Period size: 84 Copynumber: 2.0 Consensus size: 84
14553489 TATGTTTTAT
* *
14553499 TATGGTACCTGTACTTTCATAAAATGTCAAATGTGATACCTGCACTTTGAAAATGTTCAATATGG
1 TATGGTACCTGTACTTTCATAAAATGTCAAATGTGATACCTGCACTTTGAAAATATCCAATATGG
14553564 TATTTGAACTATCAATATG
66 TATTTGAACTATCAATATG
* **
14553583 TATGGTACTTGGT-CTTTCATAAAATGTCAAATGT-AGTATTTGCACTTTGAAAATATCCAATAT
1 TATGGTACCT-GTACTTTCATAAAATGTCAAATGTGA-TACCTGCACTTTGAAAATATCCAATAT
14553646 GGTATTTGAACTATCAATAT
64 GGTATTTGAACTATCAATAT
14553666 ATGCTTTATT
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
83 1 0.01
84 73 0.96
85 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (84 bp):
TATGGTACCTGTACTTTCATAAAATGTCAAATGTGATACCTGCACTTTGAAAATATCCAATATGG
TATTTGAACTATCAATATG
Found at i:14556689 original size:325 final size:325
Alignment explanation
Indices: 14556099--14556748 Score: 1291
Period size: 325 Copynumber: 2.0 Consensus size: 325
14556089 TTTTATCTAA
14556099 CTGAACCCTGCCTATCTAGTTAAACTGAAATCTACTCACTGTTTGGCCCTGCTTTTCTCTGTCTT
1 CTGAACCCTGCCTATCTAGTTAAACTGAAATCTACTCACTGTTTGGCCCTGCTTTTCTCTGTCTT
14556164 CTAGTTCTAGGGTTTTAGTTTCCATTCCATAAGGGTTTTGTTTTCTGAGGACCGAGATTCTCTGA
66 CTAGTTCTAGGGTTTTAGTTTCCATTCCATAAGGGTTTTGTTTTCTGAGGACCGAGATTCTCTGA
14556229 AGAAAGAGAGGGAGAGAGAAAGAGGAAGGGAAAGAAAATGAAGGTGAAAGTAATATCACGTTCTA
131 AGAAAGAGAGGGAGAGAGAAAGAGGAAGGGAAAGAAAATGAAGGTGAAAGTAATATCACGTTCTA
14556294 CAGATGAGTTCACTCGAGAACGAAGCCAAGATCTGCAGAGGGTGTTTCGTAATTTCGACCCCAGC
196 CAGATGAGTTCACTCGAGAACGAAGCCAAGATCTGCAGAGGGTGTTTCGTAATTTCGACCCCAGC
14556359 TTACGATCCCAAGAGAAAGCCGTCGAGTACGTCCGAGCTCTTAACGCTGCCAAATTGGACAAGGT
261 TTACGATCCCAAGAGAAAGCCGTCGAGTACGTCCGAGCTCTTAACGCTGCCAAATTGGACAAGGT
14556424 CTGAACCCTGCCTATCTAGTTAAACTGAAATCTACTCACTGTTTGGCCCTGCTTTTCTCTGTCTT
1 CTGAACCCTGCCTATCTAGTTAAACTGAAATCTACTCACTGTTTGGCCCTGCTTTTCTCTGTCTT
14556489 CTAGTTCTAGGGTTTTAGTTTCCATTCCATAAGGGTTTTGTTTTCTGAGGACCGAGATTCTCTGA
66 CTAGTTCTAGGGTTTTAGTTTCCATTCCATAAGGGTTTTGTTTTCTGAGGACCGAGATTCTCTGA
*
14556554 AGAAAGAGAGGGAGAGAGAAATAGGAAGGGAAAGAAAATGAAGGTGAAAGTAATATCACGTTCTA
131 AGAAAGAGAGGGAGAGAGAAAGAGGAAGGGAAAGAAAATGAAGGTGAAAGTAATATCACGTTCTA
14556619 CAGATGAGTTCACTCGAGAACGAAGCCAAGATCTGCAGAGGGTGTTTCGTAATTTCGACCCCAGC
196 CAGATGAGTTCACTCGAGAACGAAGCCAAGATCTGCAGAGGGTGTTTCGTAATTTCGACCCCAGC
14556684 TTACGATCCCAAGAGAAAGCCGTCGAGTACGTCCGAGCTCTTAACGCTGCCAAATTGGACAAGGT
261 TTACGATCCCAAGAGAAAGCCGTCGAGTACGTCCGAGCTCTTAACGCTGCCAAATTGGACAAGGT
14556749 AAATTATCAA
Statistics
Matches: 324, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
325 324 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (325 bp):
CTGAACCCTGCCTATCTAGTTAAACTGAAATCTACTCACTGTTTGGCCCTGCTTTTCTCTGTCTT
CTAGTTCTAGGGTTTTAGTTTCCATTCCATAAGGGTTTTGTTTTCTGAGGACCGAGATTCTCTGA
AGAAAGAGAGGGAGAGAGAAAGAGGAAGGGAAAGAAAATGAAGGTGAAAGTAATATCACGTTCTA
CAGATGAGTTCACTCGAGAACGAAGCCAAGATCTGCAGAGGGTGTTTCGTAATTTCGACCCCAGC
TTACGATCCCAAGAGAAAGCCGTCGAGTACGTCCGAGCTCTTAACGCTGCCAAATTGGACAAGGT
Found at i:14566474 original size:6 final size:6
Alignment explanation
Indices: 14566463--14566501 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
14566453 GTCGAAACTT
14566463 TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTG
1 TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTGCCC TTG
14566502 ATAAAGAGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.46, G:0.18, T:0.36
Consensus pattern (6 bp):
TTGCCC
Found at i:14571952 original size:97 final size:99
Alignment explanation
Indices: 14571777--14571975 Score: 244
Period size: 97 Copynumber: 2.0 Consensus size: 99
14571767 GGTTAGTTGC
* * * * *
14571777 ATTTCAATCAATTTTAGATTGGATTTTATTTAGAGGAGCTCTTGGGTTAAGTCAAATTTTAGGGG
1 ATTTCAATCAATTTTAGATTGGATTCTATCTAGAGGAGCTCGTGGGTCAAGTCAAATTTCAGGGG
* *
14571842 CGAACTTAGAAA-TTTTTTA-GGGCTAAAATTAA
66 CGAACTTAAAAATTTTTTTAGGGGCCAAAATTAA
* ** *
14571874 ATTTCAATCAATTTTAGATTGGATTCTATCTAGAAGTA-CTCGTGGGTCGGGTCAAA-TTCATGG
1 ATTTCAATCAATTTTAGATTGGATTCTATCTAG-AGGAGCTCGTGGGTCAAGTCAAATTTCAGGG
*
14571937 GCGAAGTTATAAAATTTTTTTAGGGGCCAAAATTAA
65 GCGAACTTA-AAAATTTTTTTAGGGGCCAAAATTAA
14571973 ATT
1 ATT
14571976 ATAATTTTTA
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
96 13 0.15
97 48 0.56
98 10 0.12
99 15 0.17
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.38
Consensus pattern (99 bp):
ATTTCAATCAATTTTAGATTGGATTCTATCTAGAGGAGCTCGTGGGTCAAGTCAAATTTCAGGGG
CGAACTTAAAAATTTTTTTAGGGGCCAAAATTAA
Found at i:14584031 original size:20 final size:20
Alignment explanation
Indices: 14584006--14584046 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
14583996 CCAAACCTTA
14584006 AGATACAAACCCTCTCAAAG
1 AGATACAAACCCTCTCAAAG
14584026 AGATACAAACCCTCTCAAAG
1 AGATACAAACCCTCTCAAAG
14584046 A
1 A
14584047 AATAATCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.29, G:0.10, T:0.15
Consensus pattern (20 bp):
AGATACAAACCCTCTCAAAG
Found at i:14586478 original size:23 final size:22
Alignment explanation
Indices: 14586435--14586478 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
14586425 TTCTAAGTCG
14586435 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
14586458 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
14586479 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:14586588 original size:45 final size:45
Alignment explanation
Indices: 14586524--14586611 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
14586514 ACAGATACTC
* * * *
14586524 GGTGGATTCAGCACGTAGCAACCACCTTATTAATCAATAATGTCT
1 GGTGGAATCAACACATAGCAACCACCTTACTAATCAATAATGTCT
*
14586569 GGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGT
1 GGTGGAATCAACACATAGCAACCACCTTACTAATCAATAATGT
14586612 TCGGTTCACA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (45 bp):
GGTGGAATCAACACATAGCAACCACCTTACTAATCAATAATGTCT
Found at i:14586688 original size:51 final size:50
Alignment explanation
Indices: 14586622--14586808 Score: 189
Period size: 51 Copynumber: 3.7 Consensus size: 50
14586612 TCGGTTCACA
* *
14586622 TAGTAGCATGCACATAGTACTACACATGTGACCATTACCATTCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATTCGATACACG
* * * * * * * *
14586673 TAATAGCCTGCACATAGAACTACACACATGATCGAAACTA-TCTGATACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATTC-GATACACG
* * * *
14586724 TAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATT-CGATACACG
*
14586774 TAGTAGCCTGCACATAGTACTATACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
14586809 CACTTTCACT
Statistics
Matches: 106, Mismatches: 25, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
49 2 0.02
50 39 0.37
51 63 0.59
52 2 0.02
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATACCATTCGATACACG
Found at i:14594303 original size:20 final size:20
Alignment explanation
Indices: 14594274--14594322 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
14594264 TTATTATTTA
*
14594274 AATTAATCTCT-AATCTTAAT
1 AATTATTCTCTAAAT-TTAAT
14594294 AATTATTCTCTCTAAATTTAAT
1 AATTA-T-TCTCTAAATTTAAT
14594316 AATTATT
1 AATTATT
14594323 TTCATCTTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
20 6 0.24
21 1 0.04
22 15 0.60
23 3 0.12
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.49
Consensus pattern (20 bp):
AATTATTCTCTAAATTTAAT
Found at i:14594308 original size:22 final size:22
Alignment explanation
Indices: 14594280--14594322 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
14594270 TTTAAATTAA
14594280 TCTCT-AATCTTAATAATTATTC
1 TCTCTAAAT-TTAATAATTATTC
14594302 TCTCTAAATTTAATAATTATT
1 TCTCTAAATTTAATAATTATT
14594323 TTCATCTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.35, C:0.14, G:0.00, T:0.51
Consensus pattern (22 bp):
TCTCTAAATTTAATAATTATTC
Found at i:14600322 original size:7 final size:7
Alignment explanation
Indices: 14600306--14600350 Score: 74
Period size: 7 Copynumber: 6.6 Consensus size: 7
14600296 TCACATTTTG
14600306 AAAT-TC
1 AAATATC
14600312 AAATATC
1 AAATATC
14600319 AAATATC
1 AAATATC
14600326 AAATATC
1 AAATATC
*
14600333 AAATATA
1 AAATATC
14600340 AAATATC
1 AAATATC
14600347 AAAT
1 AAAT
14600351 TTTAAAAATC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 4 0.11
7 32 0.89
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.29
Consensus pattern (7 bp):
AAATATC
Found at i:14601112 original size:31 final size:32
Alignment explanation
Indices: 14601058--14601119 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 32
14601048 GTCCCAGACA
14601058 TGGTCTTACACGGGATGTTCTCATATCGGTGT
1 TGGTCTTACACGGGATGTTCTCATATCGGTGT
*
14601090 TGGTCTTACATGGGA-GTTCTCATATCGGTG
1 TGGTCTTACACGGGATGTTCTCATATCGGTG
14601120 CCCATGCCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 15 0.52
32 14 0.48
ACGTcount: A:0.16, C:0.18, G:0.29, T:0.37
Consensus pattern (32 bp):
TGGTCTTACACGGGATGTTCTCATATCGGTGT
Found at i:14601168 original size:50 final size:50
Alignment explanation
Indices: 14601090--14601259 Score: 216
Period size: 50 Copynumber: 3.4 Consensus size: 50
14601080 ATATCGGTGT
* ** * * *
14601090 TGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAGACA
1 TGGTCTTACAAGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACA
** *
14601140 TGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCATACA
1 TGGTCTTACAAGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACA
* *
14601190 TGGTCTTACATAGGG-CTTCTCATCTCGGTGCTAACGCCATGTCCCAGACA
1 TGGTCTTACA-AGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACA
*
14601240 TGGTCTTACATGGGACCTCT
1 TGGTCTTACAAGGGACCTCT
14601260 TTACCCAAAT
Statistics
Matches: 103, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
49 3 0.03
50 97 0.94
51 3 0.03
ACGTcount: A:0.19, C:0.30, G:0.24, T:0.28
Consensus pattern (50 bp):
TGGTCTTACAAGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACA
Found at i:14606239 original size:50 final size:50
Alignment explanation
Indices: 14606115--14606363 Score: 266
Period size: 50 Copynumber: 4.8 Consensus size: 50
14606105 GATAATAACA
* * ** * *
14606115 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
14606166 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * * *
14606216 TGCCAACGCCATGTCCTAGACATGGCCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
14606266 TGCCCATGCCATGTCCTAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
14606321 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
14606364 TTACCCAAAT
Statistics
Matches: 168, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
49 1 0.01
50 90 0.54
51 33 0.20
53 3 0.02
54 1 0.01
55 2 0.01
56 38 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:14606302 original size:100 final size:104
Alignment explanation
Indices: 14606114--14606363 Score: 321
Period size: 100 Copynumber: 2.4 Consensus size: 104
14606104 TGATAATAAC
** *
14606114 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATGATGGTGCCCATGCCATG
* *
14606179 TCCCAGACATGGTCTTACGGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* * * *
14606216 -TGCCAACGCCATGTCCTAGACATGGCCTTACATGGGACCTCTCAT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGAT-GGTGCCCATGCCATG
*
14606279 TCCTAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
14606321 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
14606364 TTACCCAAAT
Statistics
Matches: 127, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
99 1 0.01
100 48 0.38
101 34 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 38 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:14606479 original size:13 final size:13
Alignment explanation
Indices: 14606458--14606489 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14606448 GCTTGGATCA
*
14606458 TCATCAAATAAAT
1 TCATAAAATAAAT
14606471 TCATAAAATAAAT
1 TCATAAAATAAAT
14606484 TCATAA
1 TCATAA
14606490 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:14606887 original size:34 final size:33
Alignment explanation
Indices: 14606839--14606905 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 33
14606829 ACAACATCAA
* *
14606839 ATTCTCACTCTAACACT-TACTTATGTACATTAG
1 ATTCCCACTCTAACA-TGTACTTATGAACATTAG
14606872 NATTCCCACTCTAACATGTACTTATGAACATTAG
1 -ATTCCCACTCTAACATGTACTTATGAACATTAG
14606906 GTATTTTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 1 0.03
34 29 0.97
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.36
Consensus pattern (33 bp):
ATTCCCACTCTAACATGTACTTATGAACATTAG
Found at i:14611456 original size:50 final size:50
Alignment explanation
Indices: 14611341--14611533 Score: 253
Period size: 50 Copynumber: 3.8 Consensus size: 50
14611331 GATAATAACA
* ** *
14611341 TGCCAA-AGCCATGTCCCAGACATGGTCTTACATTGGATGTTCTCATATCGG
1 TGCCAACA-CCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* ** * ** *
14611392 TGCCGATGCCATGTCCCAGACCTGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
14611442 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
14611492 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCT
14611534 TTACCCAAAT
Statistics
Matches: 123, Mismatches: 18, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
50 93 0.76
51 30 0.24
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:14611518 original size:100 final size:101
Alignment explanation
Indices: 14611341--14611533 Score: 282
Period size: 100 Copynumber: 1.9 Consensus size: 101
14611331 GATAATAACA
* ** * *
14611341 TGCCAAAGCCATGTCCCAGACATGGTCTTACATTGGATGTTCTCATATCGGTGCCGATGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGGTGCCAACGCCATGT
* *
14611406 CCCAGACCTGGTCTTACGGGGGACCTCTCATCTTGG
66 CCCAGACATGGTCTTACAGGGGACCTCTCATCTTGG
*
14611442 TGCCAACA-CCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCAACGCCATG
1 TGCCAA-AGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGGTGCCAACGCCATG
*
14611505 TCCCAGACATGGTCTTACATGGGACCTCT
65 TCCCAGACATGGTCTTACAGGGGACCTCT
14611534 TTACCCAAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
100 47 0.57
101 34 0.41
102 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (101 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATATCGGTGCCAACGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCATCTTGG
Found at i:14616329 original size:41 final size:41
Alignment explanation
Indices: 14616272--14616369 Score: 178
Period size: 41 Copynumber: 2.4 Consensus size: 41
14616262 CTTTGAATGT
*
14616272 AAGGGGTTGCTAAGTGCAGATTCCCTGAATCATTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATCAAA
*
14616313 AAGGGGTTGCTAAGTGCAGATTCCCCGAATTATTGATCAAA
1 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATCAAA
14616354 AAGGGGTTGCTAAGTG
1 AAGGGGTTGCTAAGTG
14616370 TGTTATGGAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (41 bp):
AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATCAAA
Found at i:14616439 original size:13 final size:14
Alignment explanation
Indices: 14616415--14616443 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14616405 AGGTTGTTAG
14616415 TATCAGTTAGCAGT
1 TATCAGTTAGCAGT
14616429 TATCA-TTAGCAGT
1 TATCAGTTAGCAGT
14616442 TA
1 TA
14616444 ATAAACCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (14 bp):
TATCAGTTAGCAGT
Found at i:14620486 original size:42 final size:41
Alignment explanation
Indices: 14620416--14620530 Score: 142
Period size: 41 Copynumber: 2.8 Consensus size: 41
14620406 TCCCCGAATT
* *
14620416 ATTGTTTATAAAGGTGGTTCCTAAGTGCTGATTCCATCGTATC
1 ATTGATTATAAA-GTGGTTGCTAAGTGCTGATTCC-TCGTATC
* * *
14620459 CTTGATTGTGAAAG-GGTTGCTATGTGCTGATTCCTCGTATC
1 ATTGATTAT-AAAGTGGTTGCTAAGTGCTGATTCCTCGTATC
*
14620500 ATTGATTATAAGGTGGTTGCTAAGTGCTGAT
1 ATTGATTATAAAGTGGTTGCTAAGTGCTGAT
14620531 CCACCGGGAT
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
40 3 0.05
41 30 0.49
42 18 0.30
43 7 0.11
44 3 0.05
ACGTcount: A:0.22, C:0.14, G:0.25, T:0.39
Consensus pattern (41 bp):
ATTGATTATAAAGTGGTTGCTAAGTGCTGATTCCTCGTATC
Found at i:14620505 original size:41 final size:42
Alignment explanation
Indices: 14620416--14620621 Score: 157
Period size: 44 Copynumber: 4.8 Consensus size: 42
14620406 TCCCCGAATT
* *
14620416 ATTGTTTATAAAGGTGGTTCCTAAGTGCTGATTCCATCGTATC
1 ATTGATTATAAA-GTGGTTGCTAAGTGCTGATTCCATCGTATC
* * *
14620459 CTTGATTGTGAAAG-GGTTGCTATGTGCTGATTCC-TCGTATC
1 ATTGATTAT-AAAGTGGTTGCTAAGTGCTGATTCCATCGTATC
* * *
14620500 ATTGATTATAAGGTGGTTGCTAAGTGCTGA-TCCACCGGGATCC
1 ATTGATTATAAAGTGGTTGCTAAGTGCTGATTCCATC-GTAT-C
* ** * * * *
14620543 TTTGAACATGAGGTGGTTGCTAAGTGCTGATTCCACCGGGATCC
1 ATTGATTATAAAGTGGTTGCTAAGTGCTGATTCCATC-GTAT-C
* ** * *
14620587 TTTGAACATGAGGTGGTTGCTAAGTGCTGATTCCA
1 ATTGATTATAAAGTGGTTGCTAAGTGCTGATTCCA
14620622 CCGGGATCCT
Statistics
Matches: 142, Mismatches: 15, Indels: 11
0.85 0.09 0.07
Matches are distributed among these distances:
40 6 0.04
41 30 0.21
42 21 0.15
43 34 0.24
44 51 0.36
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.34
Consensus pattern (42 bp):
ATTGATTATAAAGTGGTTGCTAAGTGCTGATTCCATCGTATC
Found at i:14620593 original size:44 final size:44
Alignment explanation
Indices: 14620510--14620668 Score: 302
Period size: 44 Copynumber: 3.6 Consensus size: 44
14620500 ATTGATTATA
14620510 AGGTGGTTGCTAAGTGCTGA-TCCACCGGGATCCTTTGAACATG
1 AGGTGGTTGCTAAGTGCTGATTCCACCGGGATCCTTTGAACATG
14620553 AGGTGGTTGCTAAGTGCTGATTCCACCGGGATCCTTTGAACATG
1 AGGTGGTTGCTAAGTGCTGATTCCACCGGGATCCTTTGAACATG
14620597 AGGTGGTTGCTAAGTGCTGATTCCACCGGGATCCTTTGAACATG
1 AGGTGGTTGCTAAGTGCTGATTCCACCGGGATCCTTTGAACATG
*
14620641 AGGTGGTTGCTAAGTGCTAATTCCACCG
1 AGGTGGTTGCTAAGTGCTGATTCCACCG
14620669 TGTAACGGTT
Statistics
Matches: 114, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
43 20 0.18
44 94 0.82
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (44 bp):
AGGTGGTTGCTAAGTGCTGATTCCACCGGGATCCTTTGAACATG
Found at i:14629000 original size:96 final size:97
Alignment explanation
Indices: 14628900--14629117 Score: 264
Period size: 96 Copynumber: 2.3 Consensus size: 97
14628890 TTTTTAATAA
* * *
14628900 AAAAATTAATTAAATTAGGGTTTAGA-GTTACTTGAGTAATTTAATTAAAAATTATTTA-AAAAT
1 AAAAATCAAATAAATTAGGGTTTAGATGTTACTTGAGTAAATTAATT-AAAATTATTTATAAAAT
* *
14628963 TAGATAAGG-GTTTAGAGTTAAGGGTTTTTAAGG
65 TAGATAAGGAG-TTAGAGTTAAGGGGTTTTAAGC
* * *
14628996 AAAAATCAAATAAATTAGGG-TTAAATGTTACTTGAGTAAATTAATTATAATTTTTTATAAAATT
1 AAAAATCAAATAAATTAGGGTTTAGATGTTACTTGAGTAAATTAATTAAAATTATTTATAAAATT
* * * *
14629060 TGATTAGGAGTTAGTGTTTAGGGGTTTTAAGC
66 AGATAAGGAGTTAGAGTTAAGGGGTTTTAAGC
*
14629092 AAAAACTCAAATAAATTAAGGTTTAG
1 AAAAA-TCAAATAAATTAGGGTTTAG
14629118 GGTTTAGGGT
Statistics
Matches: 103, Mismatches: 14, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
95 13 0.13
96 72 0.70
97 15 0.15
98 3 0.03
ACGTcount: A:0.42, C:0.03, G:0.17, T:0.38
Consensus pattern (97 bp):
AAAAATCAAATAAATTAGGGTTTAGATGTTACTTGAGTAAATTAATTAAAATTATTTATAAAATT
AGATAAGGAGTTAGAGTTAAGGGGTTTTAAGC
Found at i:14629379 original size:126 final size:126
Alignment explanation
Indices: 14629154--14629695 Score: 879
Period size: 126 Copynumber: 4.3 Consensus size: 126
14629144 TTGTTAATTT
* *
14629154 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGGC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
*
14629219 ATTTCTGAGCAAATAGTGTCAAAAAA-GCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGT-AAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* * *
14629280 AAAGAAGCTCCCACATAGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTTGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
14629345 GTTTCTGAGCAAATAGTGTAAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTAAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
*
14629406 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAT
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
* * * *
14629471 GTTTTTGAGCAAATAGTGTAAAAAATGCTTTAAGCAGGATGTTTTGTCAGCAGAAGTACTA
66 GTTTCTGAGCAAATAGTGTAAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* * * *
14629532 AAAGAAGATCCCACGTGGACGCGTTTTTTCTACAGTAGCTCCCGAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
* ** *
14629597 GTTTCTGAGAAAATAGTGTCTAAAACGCCTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
66 GTTTCTGAGCAAATAGTGTAAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* *
14629658 AAAGAAGATCCCACGTGGACGCGCTTTTGCTAGAGTAG
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
14629696 AGCATGTTTG
Statistics
Matches: 385, Mismatches: 30, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
125 6 0.02
126 379 0.98
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (126 bp):
AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGAC
GTTTCTGAGCAAATAGTGTAAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
Found at i:14631813 original size:11 final size:11
Alignment explanation
Indices: 14631797--14631863 Score: 66
Period size: 11 Copynumber: 6.0 Consensus size: 11
14631787 ATTTTAAATA
14631797 GAAATTTGAGAG
1 GAAA-TTGAGAG
*
14631809 GAATTTGAGAG
1 GAAATTGAGAG
*
14631820 GAAATTGAAAG
1 GAAATTGAGAG
*
14631831 GAAATTGA-AA
1 GAAATTGAGAG
14631841 GAATATT-AGAG
1 GAA-ATTGAGAG
14631852 AGAAATTGAGAG
1 -GAAATTGAGAG
14631864 AAAGGATTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
10 5 0.11
11 31 0.67
12 10 0.22
ACGTcount: A:0.48, C:0.00, G:0.30, T:0.22
Consensus pattern (11 bp):
GAAATTGAGAG
Found at i:14637491 original size:26 final size:26
Alignment explanation
Indices: 14637462--14637514 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14637452 TCTGGAGTGA
14637462 AACAAAGTACTGAGAAGCTCTAGTTC
1 AACAAAGTACTGAGAAGCTCTAGTTC
*
14637488 AACAATGTACTGAGAAGCTCTAGTTC
1 AACAAAGTACTGAGAAGCTCTAGTTC
14637514 A
1 A
14637515 CACCAATTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.25
Consensus pattern (26 bp):
AACAAAGTACTGAGAAGCTCTAGTTC
Found at i:14638877 original size:14 final size:13
Alignment explanation
Indices: 14638858--14638921 Score: 71
Period size: 13 Copynumber: 4.9 Consensus size: 13
14638848 GATCCGATTC
14638858 AAAAAAATCAAAT
1 AAAAAAATCAAAT
14638871 AAAAAAATCAAAT
1 AAAAAAATCAAAT
14638884 AAAAAAAT-AAA-
1 AAAAAAATCAAAT
*
14638895 AAAAGCAAA-CAAAG
1 AAAA--AAATCAAAT
14638909 AAGAAAAATCAAA
1 AA-AAAAATCAAA
14638922 ATCAAAATCA
Statistics
Matches: 45, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
11 4 0.09
12 3 0.07
13 30 0.67
14 6 0.13
15 2 0.04
ACGTcount: A:0.78, C:0.08, G:0.05, T:0.09
Consensus pattern (13 bp):
AAAAAAATCAAAT
Found at i:14638924 original size:6 final size:6
Alignment explanation
Indices: 14638913--14638957 Score: 65
Period size: 6 Copynumber: 7.7 Consensus size: 6
14638903 ACAAAGAAGA
* *
14638913 AAAATC AAAATC AAAATC AAAATC AAAGTC AAAATG AAAAT- AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
14638958 AAGGAGAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
5 4 0.11
6 32 0.89
ACGTcount: A:0.69, C:0.11, G:0.04, T:0.16
Consensus pattern (6 bp):
AAAATC
Found at i:14638971 original size:20 final size:20
Alignment explanation
Indices: 14638943--14638983 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
14638933 AATCAAAGTC
*
14638943 AAAATGAAAATAAAAAAGGAG
1 AAAATG-AAAGAAAAAAGGAG
14638964 AAAA-GAAAGAAAAAAGGAG
1 AAAATGAAAGAAAAAAGGAG
14638983 A
1 A
14638984 GGCCAAGGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 14 0.74
20 1 0.05
21 4 0.21
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.05
Consensus pattern (20 bp):
AAAATGAAAGAAAAAAGGAG
Found at i:14639371 original size:13 final size:13
Alignment explanation
Indices: 14639328--14639363 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
14639318 GGATTTCAAA
* *
14639328 AAAAAAGAAGATG
1 AAAAATGAAAATG
14639341 AAAAATGAAAATG
1 AAAAATGAAAATG
14639354 AAAAATGAAA
1 AAAAATGAAA
14639364 GAGTAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.17, T:0.11
Consensus pattern (13 bp):
AAAAATGAAAATG
Found at i:14640736 original size:87 final size:87
Alignment explanation
Indices: 14640590--14641013 Score: 513
Period size: 87 Copynumber: 4.8 Consensus size: 87
14640580 ATCAGTGAAA
14640590 ATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
* *
14640655 TCCTACGTTAACAGCGAAGTAG
66 TCCTGCGTTAACAGCGAAGCAG
* *
14640677 ATCGAAAATAAAGCCTTGCCTCCATTGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
14640742 TCCTGCGTTAACAGCGAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* *
14640764 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCC
1 ATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
* **
14640829 TCCTGTGTCGACA--GAAGCAG
66 TCCTGCGTTAACAGCGAAGCAG
* * * ** *
14640849 ATC-AAAGATTACAAGTCCTAT--ATCC-CTGGCCAGCAGTGGA-ATAGGTTAGAA-ACTACAGA
1 ATCGAAA-A-CA-AAG-CCT-TGCCTCCATTGG-TTGCAGTGGAGCT-GGTTA-AAGA-T--AG-
14640908 TCTAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAG
54 -C-AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAG
* *
14640944 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCC
1 ATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
14641009 TCCTG
66 TCCTG
14641014 TGTCGACAGA
Statistics
Matches: 285, Mismatches: 30, Indels: 44
0.79 0.08 0.12
Matches are distributed among these distances:
84 3 0.01
85 11 0.04
86 4 0.01
87 189 0.66
88 7 0.02
89 1 0.00
90 4 0.01
91 1 0.00
92 7 0.02
93 40 0.14
94 4 0.01
95 11 0.04
96 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (87 bp):
ATCGAAAACAAAGCCTTGCCTCCATTGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
TCCTGCGTTAACAGCGAAGCAG
Found at i:14640962 original size:180 final size:180
Alignment explanation
Indices: 14640731--14641090 Score: 720
Period size: 180 Copynumber: 2.0 Consensus size: 180
14640721 TAAAGATAGC
14640731 AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGC
1 AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGC
14640796 AGTGGAGCTGGTTAAAGATAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTAC
66 AGTGGAGCTGGTTAAAGATAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTAC
14640861 AAGTCCTATATCCCTGGCCAGCAGTGGAATAGGTTAGAAACTACAGATCT
131 AAGTCCTATATCCCTGGCCAGCAGTGGAATAGGTTAGAAACTACAGATCT
14640911 AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGC
1 AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGC
14640976 AGTGGAGCTGGTTAAAGATAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTAC
66 AGTGGAGCTGGTTAAAGATAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTAC
14641041 AAGTCCTATATCCCTGGCCAGCAGTGGAATAGGTTAGAAACTACAGATCT
131 AAGTCCTATATCCCTGGCCAGCAGTGGAATAGGTTAGAAACTACAGATCT
14641091 TATCTCCCTA
Statistics
Matches: 180, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
180 180 1.00
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (180 bp):
AGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGC
AGTGGAGCTGGTTAAAGATAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTAC
AAGTCCTATATCCCTGGCCAGCAGTGGAATAGGTTAGAAACTACAGATCT
Found at i:14641088 original size:87 final size:88
Alignment explanation
Indices: 14640814--14641091 Score: 279
Period size: 87 Copynumber: 3.1 Consensus size: 88
14640804 TGGTTAAAGA
14640814 TAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTACAAGTCCTATATCCCTGGC
1 TAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTACAAGTCCTATATCCCTGGC
14640879 CAGCAGTGGAATAGGTTAGAAAC
66 CAGCAGTGGAATAGGTTAGAAAC
* * ** *
14640902 TACAGATCTAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAA-A--ACAAAG-CCT-TG
1 T--AG--C-AGATCTTGCCCTCCTGTGTCGACA--GAAGCAGATCAAAGATTAC-AAGTCCTAT-
* * ** *
14640962 CCTCCATCGG-TTGCAGTGGAGCT-GGTTA-AAGA-
57 -ATCCCT-GGCCAGCAGTGGA-ATAGGTTAGAA-AC
14640994 TAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTACAAGTCCTATATCCCTGGC
1 TAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTACAAGTCCTATATCCCTGGC
14641059 CAGCAGTGGAATAGGTTAGAAAC
66 CAGCAGTGGAATAGGTTAGAAAC
14641082 TA-CAGATCTT
1 TAGCAGATCTT
14641092 ATCTCCCTAA
Statistics
Matches: 148, Mismatches: 20, Indels: 45
0.69 0.09 0.21
Matches are distributed among these distances:
85 12 0.08
86 4 0.03
87 49 0.33
88 11 0.07
89 1 0.01
90 4 0.03
91 1 0.01
92 9 0.06
93 41 0.28
94 4 0.03
95 12 0.08
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.24
Consensus pattern (88 bp):
TAGCAGATCTTGCCCTCCTGTGTCGACAGAAGCAGATCAAAGATTACAAGTCCTATATCCCTGGC
CAGCAGTGGAATAGGTTAGAAAC
Found at i:14641556 original size:95 final size:97
Alignment explanation
Indices: 14641436--14641631 Score: 243
Period size: 95 Copynumber: 2.0 Consensus size: 97
14641426 TACAGCGGAG
* * * * *
14641436 CAGATGGAAGCTAGTAATCCTATCTCCTTGAGATTATAGTAGAGTGGATT-AA-AAAGGATCTTA
1 CAGATGGAAGCCAGAAATCCTATCTCCCTGAGATTACAGTAGAGCGGATTAAATAAAGGATCTTA
* * **
14641499 TCTCTCTGAAGTTACAGTAAAGTAAATCGCAT
66 TCTCTATAAAGTTACAACAAAGTAAATCGCAT
* * *
14641531 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATCTT
1 CAGATGGAAGCCAGAAATCCTATCTCCCTGAGATTACAGTAGAGCGGATT-AAATAAAGGATCTT
* *
14641596 ATCTCTATAAAGTTACAACAGAGTAGATCGCAT
65 ATCTCTATAAAGTTACAACAAAGTAAATCGCAT
14641629 CAG
1 CAG
14641632 GTCTTATCTC
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
95 42 0.50
97 2 0.02
98 40 0.48
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (97 bp):
CAGATGGAAGCCAGAAATCCTATCTCCCTGAGATTACAGTAGAGCGGATTAAATAAAGGATCTTA
TCTCTATAAAGTTACAACAAAGTAAATCGCAT
Found at i:14641600 original size:139 final size:138
Alignment explanation
Indices: 14641153--14641575 Score: 684
Period size: 139 Copynumber: 3.0 Consensus size: 138
14641143 AGTGTAATGA
* * *
14641153 AGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAAATGATCTTA
1 AGCAGATGGAAGCTAGTAATCCTATCT-CCTGAGATTACAGTGGAGTGGATTAAAAAGGATCTTA
* *
14641218 TCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAATCCAGAAATCTTATCTCCATGAGA
65 TCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGA
14641283 TTACAGCGG
130 TTACAGCGG
* *
14641292 AGCAGATGGAAGCTAGTAATCCTATCTACCTGAGATTACAGTGGAGCGGATTAAAATAAAGAATC
1 AGCAGATGGAAGCTAGTAATCCTATCT-CCTGAGATTACAGTGGAGTGGATT--AA-AAAGGATC
14641357 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTG
62 TTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTG
14641422 AGATTACAGCGG
127 AGATTACAGCGG
* *
14641434 AGCAGATGGAAGCTAGTAATCCTATCTCCTTGAGATTATAGTAGAGTGGATTAAAAAGGATCTTA
1 AGCAGATGGAAGCTAGTAATCCTATCTCC-TGAGATTACAGTGGAGTGGATTAAAAAGGATCTTA
* *
14641499 TCTCTCTGAAGTTACAGTAAAGTAAATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGA
65 TCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGA
*
14641564 TTACAGTGG
130 TTACAGCGG
14641573 AGC
1 AGC
14641576 GGATTAAAAT
Statistics
Matches: 265, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
139 132 0.50
140 2 0.01
141 4 0.02
142 127 0.48
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (138 bp):
AGCAGATGGAAGCTAGTAATCCTATCTCCTGAGATTACAGTGGAGTGGATTAAAAAGGATCTTAT
CTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGAT
TACAGCGG
Found at i:14641653 original size:139 final size:139
Alignment explanation
Indices: 14641167--14641575 Score: 478
Period size: 142 Copynumber: 2.9 Consensus size: 139
14641157 GATTGAAGCC
* * *** * * *
14641167 AGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGATTAAAAATGATCTTATCTCTCTGAAGTTA
1 AGTAATCCTATCTCCTTAAGATTACAACAGAGTAGATGAAAAAGGATCTTATCTCTCTGAAGTTA
* * * *
14641232 CAGTAGAGTAGATCGCATCAGATTGAATCCAGAAATCTTATCTCCATGAGATTACAGCGGAGCAG
66 CAGTAAAGTAAATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAG
**
14641297 ATGGAAGCT
131 ATGGAAAAT
* *** ** * *
14641306 AGTAATCCTATCTACC-TGAGATTACAGTGGAGCGGATTAAAATAAAGAATCTTATCTCTCTGAA
1 AGTAATCCTATCT-CCTTAAGATTACAACAGAGTAGA-T-GAA-AAAGGATCTTATCTCTCTGAA
* *
14641370 GTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGA
62 GTTACAGTAAAGTAAATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGA
**
14641435 GCAGATGGAAGCT
127 GCAGATGGAAAAT
* * ** * *
14641448 AGTAATCCTATCTCCTTGAGATTATAGTAGAGTGGATTAAAAAGGATCTTATCTCTCTGAAGTTA
1 AGTAATCCTATCTCCTTAAGATTACAACAGAGTAGATGAAAAAGGATCTTATCTCTCTGAAGTTA
*
14641513 CAGTAAAGTAAATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGC
66 CAGTAAAGTAAATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGC
14641576 GGATTAAAAT
Statistics
Matches: 251, Mismatches: 14, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
139 116 0.46
140 5 0.02
141 5 0.02
142 125 0.50
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (139 bp):
AGTAATCCTATCTCCTTAAGATTACAACAGAGTAGATGAAAAAGGATCTTATCTCTCTGAAGTTA
CAGTAAAGTAAATCGCATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAG
ATGGAAAAT
Found at i:14641753 original size:50 final size:50
Alignment explanation
Indices: 14641677--14641885 Score: 199
Period size: 50 Copynumber: 4.2 Consensus size: 50
14641667 AATAATTACA
* * * * *
14641677 GCGAATCTTACCTCCCAGGCGA-TGCAGTGGAACAGATTAATGCCACAACG
1 GCGAATCTTGCTTCCCAGGC-ATTGCAGTGAAAAAGATTAAAGCCACAACG
* * * *
14641727 GCGAATCTTGCTTCCCCGGCATTGCAGTTAAAAAGATTAAAGCTACAACA
1 GCGAATCTTGCTTCCCAGGCATTGCAGTGAAAAAGATTAAAGCCACAACG
* * * *
14641777 GCGAATCTTACCTT-CCAGGCAATGCAGTGGAACAA-ATTAATGCCACAACG
1 GCGAATCTT-GCTTCCCAGGCATTGCAGT-GAAAAAGATTAAAGCCACAACG
* * * * * *
14641827 GCGAATCTTGCATCCCCGACATTACAGTTAAAAAGATTAAAGCCACAATG
1 GCGAATCTTGCTTCCCAGGCATTGCAGTGAAAAAGATTAAAGCCACAACG
14641877 GCGAATCTT
1 GCGAATCTT
14641886 ACTTTCCAAA
Statistics
Matches: 127, Mismatches: 27, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
49 7 0.06
50 113 0.89
51 7 0.06
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (50 bp):
GCGAATCTTGCTTCCCAGGCATTGCAGTGAAAAAGATTAAAGCCACAACG
Found at i:14641855 original size:100 final size:100
Alignment explanation
Indices: 14641674--14641893 Score: 350
Period size: 100 Copynumber: 2.2 Consensus size: 100
14641664 CCGAATAATT
* * * *
14641674 ACAGCGAATCTTACCTCCCAGGCGATGCAGTGGAACAGATTAATGCCACAACGGCGAATCTTGCT
1 ACAGCGAATCTTACCTTCCAGGCAATGCAGTGGAACAAATTAATGCCACAACGGCGAATCTTGCA
* * *
14641739 TCCCCGGCATTGCAGTTAAAAAGATTAAAGCTACA
66 TCCCCGACATTACAGTTAAAAAGATTAAAGCCACA
14641774 ACAGCGAATCTTACCTTCCAGGCAATGCAGTGGAACAAATTAATGCCACAACGGCGAATCTTGCA
1 ACAGCGAATCTTACCTTCCAGGCAATGCAGTGGAACAAATTAATGCCACAACGGCGAATCTTGCA
14641839 TCCCCGACATTACAGTTAAAAAGATTAAAGCCACA
66 TCCCCGACATTACAGTTAAAAAGATTAAAGCCACA
** *
14641874 ATGGCGAATCTTACTTTCCA
1 ACAGCGAATCTTACCTTCCA
14641894 AAAGTTACGA
Statistics
Matches: 110, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 110 1.00
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.22
Consensus pattern (100 bp):
ACAGCGAATCTTACCTTCCAGGCAATGCAGTGGAACAAATTAATGCCACAACGGCGAATCTTGCA
TCCCCGACATTACAGTTAAAAAGATTAAAGCCACA
Found at i:14646298 original size:23 final size:23
Alignment explanation
Indices: 14646272--14646315 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
14646262 TTATTGATCA
14646272 GTGGTAGCTTCGGCTACATATTT
1 GTGGTAGCTTCGGCTACATATTT
14646295 GTGGTAGCTTCGGCTACATAT
1 GTGGTAGCTTCGGCTACATAT
14646316 CAGTGTGGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.36
Consensus pattern (23 bp):
GTGGTAGCTTCGGCTACATATTT
Found at i:14652677 original size:23 final size:23
Alignment explanation
Indices: 14652651--14652726 Score: 134
Period size: 23 Copynumber: 3.3 Consensus size: 23
14652641 AGTGTTATTG
14652651 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
14652674 ATCAGTGGTAACTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
14652697 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
14652720 ATCAGTG
1 ATCAGTG
14652727 TGGCACTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 49 1.00
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:14653264 original size:12 final size:12
Alignment explanation
Indices: 14653247--14653288 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 12
14653237 AACTAATCCT
14653247 CTCTCAAATTTC
1 CTCTCAAATTTC
14653259 CTCTC-AATTTC
1 CTCTCAAATTTC
*
14653270 CT-TCAAAATT-
1 CTCTCAAATTTC
14653280 CTCTCAAAT
1 CTCTCAAAT
14653289 CCATATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 4 0.15
11 17 0.65
12 5 0.19
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:14653373 original size:13 final size:12
Alignment explanation
Indices: 14653344--14653384 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
14653334 TTAACTCCCC
*
14653344 TTTTTTAAAATA
1 TTTTTTAAAATT
* *
14653356 ATTTTAAAAATT
1 TTTTTTAAAATT
14653368 TTTTTTAAAATT
1 TTTTTTAAAATT
14653380 TTTTT
1 TTTTT
14653385 AAACCGTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTTTTAAAATT
Found at i:14655938 original size:124 final size:123
Alignment explanation
Indices: 14655776--14656122 Score: 491
Period size: 121 Copynumber: 2.8 Consensus size: 123
14655766 CCCAAACATG
* *
14655776 CTACTCTAGCAAAAGCGAGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * *
14655841 TAGACGCGATTTTATACTATTTGCTTAGAAAAGTCAAAAAAAATTATTTCTTCCATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAAAAAAAA-TATTTCTTCAATGAC
* * *
14655900 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGAGATTTCACAAATTCTTTTCAAATAGCATCCTGA
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
14655965 TAGAAGCGA--TTATACTATTTTCTCAGAAACGTCAAAAAAAATATTTCTTCAATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAAAAAAAATATTTCTTCAATGAC
* * * *
14656021 CTACTGTAGCAAAAACACGCCCACGAGGGCGCGATTTCATAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * * * * *
14656086 TCGAAGCAATTTTGTACTATTTGATCACAAACGTCAA
66 TAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAA
14656123 CTCGAAATTA
Statistics
Matches: 198, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
121 79 0.40
122 29 0.15
123 22 0.11
124 68 0.34
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.28
Consensus pattern (123 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAAAGTCAAAAAAAATATTTCTTCAATGAC
Found at i:14656624 original size:3 final size:3
Alignment explanation
Indices: 14656616--14656660 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
14656606 ACAGAAAATG
14656616 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
14656661 AATGAAGTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:14656722 original size:44 final size:44
Alignment explanation
Indices: 14656657--14656743 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
14656647 AAGAAGAAGA
*
14656657 AGAAAATGAAGTTACTCGGATTAACCAGAAACAAACAGCCAGAC
1 AGAAAATGAAGTTACTCGGATTAACCAGAAACAAACAGACAGAC
*
14656701 AGAAAATGAAGTTACTTGGATTAACCAGAAACAAACAGACAGA
1 AGAAAATGAAGTTACTCGGATTAACCAGAAACAAACAGACAGA
14656744 AAATGGAAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.49, C:0.17, G:0.18, T:0.15
Consensus pattern (44 bp):
AGAAAATGAAGTTACTCGGATTAACCAGAAACAAACAGACAGAC
Found at i:14662613 original size:18 final size:19
Alignment explanation
Indices: 14662590--14662642 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 19
14662580 AATCGTGTGG
14662590 TTCATTTTCAAAAT-ATTA
1 TTCATTTTCAAAATCATTA
* *
14662608 TTCATTTAC-AAATCGTTA
1 TTCATTTTCAAAATCATTA
*
14662626 TTCAATTTCAAAA-CATT
1 TTCATTTTCAAAATCATT
14662643 TTTTTATTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 4 0.14
18 21 0.75
19 3 0.11
ACGTcount: A:0.38, C:0.15, G:0.02, T:0.45
Consensus pattern (19 bp):
TTCATTTTCAAAATCATTA
Found at i:14666886 original size:34 final size:34
Alignment explanation
Indices: 14666848--14666915 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
14666838 TTACCTATGC
14666848 CATACCATTTTGAAACAAGCCATTTTATTTCATT
1 CATACCATTTTGAAACAAGCCATTTTATTTCATT
14666882 CATACCATTTTGAAACAAGCCATTTTATTTCATT
1 CATACCATTTTGAAACAAGCCATTTTATTTCATT
14666916 TACCTATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (34 bp):
CATACCATTTTGAAACAAGCCATTTTATTTCATT
Found at i:14669291 original size:25 final size:25
Alignment explanation
Indices: 14669226--14669294 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 25
14669216 GTCCCGATAT
* *
14669226 ATGGCTTTTCGGAGCCTCCTAATTA
1 ATGGCTCTTCGGAGCTTCCTAATTA
* ** *
14669251 TTGGCTCTTATGAGCTTCCTGATTA
1 ATGGCTCTTCGGAGCTTCCTAATTA
14669276 ATGGCTCTTCGGAGCTTCC
1 ATGGCTCTTCGGAGCTTCC
14669295 CGATATTGGT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.38
Consensus pattern (25 bp):
ATGGCTCTTCGGAGCTTCCTAATTA
Found at i:14669351 original size:25 final size:25
Alignment explanation
Indices: 14669323--14669399 Score: 93
Period size: 25 Copynumber: 3.1 Consensus size: 25
14669313 ACTTCCCAAT
* *
14669323 TACAGCTCCTATGAGCTTCTCGTTA
1 TACAGCTCATATGAGCTTCCCGTTA
14669348 TACAGCTCGA-ATGAGCTTCCCGTTA
1 TACAGCTC-ATATGAGCTTCCCGTTA
* * *
14669373 CATAGCTTATATGAGCTTCCCGTTA
1 TACAGCTCATATGAGCTTCCCGTTA
14669398 TA
1 TA
14669400 TGGCTCAAGA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
24 1 0.02
25 43 0.98
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (25 bp):
TACAGCTCATATGAGCTTCCCGTTA
Found at i:14675119 original size:35 final size:35
Alignment explanation
Indices: 14675080--14675173 Score: 143
Period size: 35 Copynumber: 2.7 Consensus size: 35
14675070 TCCAACCAAG
**
14675080 ACACACCAATGCTTGTAAGAGCTAATCCCTCTGAA
1 ACACACCAATGCTCATAAGAGCTAATCCCTCTGAA
* * *
14675115 ACACACCAATGCTCATAAAAGTTAATCCCTTTGAA
1 ACACACCAATGCTCATAAGAGCTAATCCCTCTGAA
14675150 ACACACCAATGCTCATAAGAGCTA
1 ACACACCAATGCTCATAAGAGCTA
14675174 GTCCAACCGA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.38, C:0.28, G:0.12, T:0.22
Consensus pattern (35 bp):
ACACACCAATGCTCATAAGAGCTAATCCCTCTGAA
Found at i:14675186 original size:35 final size:35
Alignment explanation
Indices: 14675068--14675189 Score: 120
Period size: 35 Copynumber: 3.5 Consensus size: 35
14675058 GTACATCGTC
**
14675068 AATCCAACC-AAGACACACCAATGCTTGTAAGAGCT
1 AATCCAACCGAA-ACACACCAATGCTCATAAGAGCT
** * * *
14675103 AATCCCTCTGAAACACACCAATGCTCATAAAAGTT
1 AATCCAACCGAAACACACCAATGCTCATAAGAGCT
****
14675138 AATCCCTTTGAAACACACCAATGCTCATAAGAGCT
1 AATCCAACCGAAACACACCAATGCTCATAAGAGCT
*
14675173 AGTCCAACCGAAACACA
1 AATCCAACCGAAACACA
14675190 GCAAACAGAG
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
35 69 0.97
36 2 0.03
ACGTcount: A:0.40, C:0.30, G:0.11, T:0.19
Consensus pattern (35 bp):
AATCCAACCGAAACACACCAATGCTCATAAGAGCT
Found at i:14675949 original size:19 final size:19
Alignment explanation
Indices: 14675925--14675962 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14675915 TCAATGTAAA
14675925 CTTAAAAAAATTTGAACAG
1 CTTAAAAAAATTTGAACAG
14675944 CTTAAAAAAATTTGAACAG
1 CTTAAAAAAATTTGAACAG
14675963 AATAAAAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (19 bp):
CTTAAAAAAATTTGAACAG
Found at i:14675969 original size:18 final size:19
Alignment explanation
Indices: 14675927--14675971 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
14675917 AATGTAAACT
**
14675927 TAAAAAAATTTGAACAGCT
1 TAAAAAAATTTGAACAGAA
14675946 TAAAAAAATTTGAACAGAA
1 TAAAAAAATTTGAACAGAA
14675965 TAAAAAA
1 TAAAAAA
14675972 CGATGGTACG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.62, C:0.07, G:0.09, T:0.22
Consensus pattern (19 bp):
TAAAAAAATTTGAACAGAA
Found at i:14684261 original size:18 final size:18
Alignment explanation
Indices: 14684238--14684273 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
14684228 AATTTCACTT
14684238 TCATGGAAAACACTAAGA
1 TCATGGAAAACACTAAGA
14684256 TCATGGAAAACACTAAGA
1 TCATGGAAAACACTAAGA
14684274 AAAACATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (18 bp):
TCATGGAAAACACTAAGA
Found at i:14688208 original size:39 final size:37
Alignment explanation
Indices: 14688141--14688233 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
14688131 ACCAGAATGG
* *
14688141 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
14688180 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
14688217 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
14688234 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:14688596 original size:3 final size:3
Alignment explanation
Indices: 14688588--14688634 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
14688578 ATTCCCACTC
*
14688588 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CTA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
14688635 TTAATACTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:14688645 original size:11 final size:11
Alignment explanation
Indices: 14688589--14688645 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
14688579 TTCCCACTCA
*
14688589 TAATAATAATAA
1 TAATAATAAT-T
*
14688601 TAATAATAATAA
1 TAATAATAAT-T
*
14688613 TAATAATAATAC
1 TAATAATAAT-T
14688625 TAATAATAATT
1 TAATAATAATT
*
14688636 TAATACTAAT
1 TAATAATAAT
14688646 ATTATACTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
11 9 0.21
12 33 0.79
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (11 bp):
TAATAATAATT
Found at i:14689378 original size:17 final size:16
Alignment explanation
Indices: 14689346--14689379 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
14689336 TTGGCTATTC
*
14689346 TGTTTCTTTCTTCTTT
1 TGTTTCTTTATTCTTT
14689362 TGTTTCTTTTATTCTTT
1 TGTTTC-TTTATTCTTT
14689379 T
1 T
14689380 ATTTTAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.03, C:0.15, G:0.06, T:0.76
Consensus pattern (16 bp):
TGTTTCTTTATTCTTT
Found at i:14689427 original size:14 final size:14
Alignment explanation
Indices: 14689368--14689418 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
14689358 CTTTTGTTTC
*
14689368 TTTTA-TTCTTTTA
1 TTTTATTTCCTTTA
* *
14689381 TTTTAACTTACTTTA
1 TTTT-ATTTCCTTTA
*
14689396 CTTTATTTCCTTTA
1 TTTTATTTCCTTTA
14689410 TTTTATTTC
1 TTTTATTTC
14689419 TTTTGTTTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
13 4 0.13
14 17 0.57
15 9 0.30
ACGTcount: A:0.18, C:0.14, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTATTTCCTTTA
Found at i:14689587 original size:14 final size:17
Alignment explanation
Indices: 14689568--14689604 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
14689558 ATTTATTTCT
14689568 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
14689582 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
14689599 TAATAT
1 TAATAT
14689605 CCTTTATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.40
15 1 0.05
16 4 0.20
17 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:14694584 original size:21 final size:21
Alignment explanation
Indices: 14694542--14694584 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
14694532 TTCAGTATAC
*
14694542 ATTCTTTCATCAGTATCATTT
1 ATTCTTTCATCAGCATCATTT
*
14694563 ATTCTTTCTTCAGACATC-TTT
1 ATTCTTTCATCAG-CATCATTT
14694584 A
1 A
14694585 ATCTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTCTTTCATCAGCATCATTT
Found at i:14695696 original size:39 final size:37
Alignment explanation
Indices: 14695629--14695721 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
14695619 ACCAGAATGG
* *
14695629 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
14695668 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
14695705 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
14695722 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:14695917 original size:23 final size:24
Alignment explanation
Indices: 14695865--14695935 Score: 74
Period size: 23 Copynumber: 2.9 Consensus size: 24
14695855 ACATATATTC
*
14695865 TCAATTCAATTACAATTTTTCACACTT
1 TCAATTCAA-T-C-ATTTTTCACACCT
14695892 TCAATTCAATCATTTTTC-CACCT
1 TCAATTCAATCATTTTTCACACCT
*
14695915 TCAA-TCAATAATTATTTCACA
1 TCAATTCAATCATT-TTTCACA
14695936 AATTCACACA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
22 8 0.20
23 12 0.30
24 9 0.22
25 1 0.03
26 1 0.03
27 9 0.22
ACGTcount: A:0.34, C:0.24, G:0.00, T:0.42
Consensus pattern (24 bp):
TCAATTCAATCATTTTTCACACCT
Found at i:14696084 original size:3 final size:3
Alignment explanation
Indices: 14696076--14696137 Score: 90
Period size: 3 Copynumber: 21.0 Consensus size: 3
14696066 ATTCCCACTC
*
14696076 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
14696124 A-A TTA ATA CTA ATA
1 ATA ATA ATA ATA ATA
14696138 TTATACTTAC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
2 1 0.02
3 51 0.98
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:14696869 original size:17 final size:16
Alignment explanation
Indices: 14696837--14696870 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
14696827 TTGGCTATTC
*
14696837 TGTTTCTTTCTTCTTT
1 TGTTTCTTTATTCTTT
14696853 TGTTTCTTTTATTCTTT
1 TGTTTC-TTTATTCTTT
14696870 T
1 T
14696871 ATTTTAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.03, C:0.15, G:0.06, T:0.76
Consensus pattern (16 bp):
TGTTTCTTTATTCTTT
Found at i:14696918 original size:14 final size:14
Alignment explanation
Indices: 14696859--14696909 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
14696849 CTTTTGTTTC
*
14696859 TTTTA-TTCTTTTA
1 TTTTATTTCCTTTA
* *
14696872 TTTTAACTTACTTTA
1 TTTT-ATTTCCTTTA
*
14696887 CTTTATTTCCTTTA
1 TTTTATTTCCTTTA
14696901 TTTTATTTC
1 TTTTATTTC
14696910 TTTTGTTTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
13 4 0.13
14 17 0.57
15 9 0.30
ACGTcount: A:0.18, C:0.14, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTATTTCCTTTA
Found at i:14697078 original size:14 final size:17
Alignment explanation
Indices: 14697059--14697095 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
14697049 ATTTATTTCT
14697059 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
14697073 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
14697090 TAATAT
1 TAATAT
14697096 CCTTTATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.40
15 1 0.05
16 4 0.20
17 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:14702594 original size:13 final size:13
Alignment explanation
Indices: 14702576--14702602 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14702566 CCTTTTGACA
14702576 CCCATTCTTGTAC
1 CCCATTCTTGTAC
14702589 CCCATTCTTGTAC
1 CCCATTCTTGTAC
14702602 C
1 C
14702603 AACATATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.41, G:0.07, T:0.37
Consensus pattern (13 bp):
CCCATTCTTGTAC
Found at i:14712156 original size:239 final size:239
Alignment explanation
Indices: 14711737--14712214 Score: 956
Period size: 239 Copynumber: 2.0 Consensus size: 239
14711727 AAGTTTGACA
14711737 ATCCATTCTGCCCACAAAAGTAAGAGAAAGTAGTGAATCGTTATTTTGTTTTGGCCACAATGCCC
1 ATCCATTCTGCCCACAAAAGTAAGAGAAAGTAGTGAATCGTTATTTTGTTTTGGCCACAATGCCC
14711802 CCAATTGGATTGTGATTGAATGAATTATTATTTTGTCGTTGCATTAGGTCTTCCAAGGAAACAAC
66 CCAATTGGATTGTGATTGAATGAATTATTATTTTGTCGTTGCATTAGGTCTTCCAAGGAAACAAC
14711867 AAAACCCAGATCACCACATCTTCGGGTTGTACAGAGGAAAGAAAGGAGGAAAATAATGAGTACTC
131 AAAACCCAGATCACCACATCTTCGGGTTGTACAGAGGAAAGAAAGGAGGAAAATAATGAGTACTC
14711932 TGTCTACTGCAACTTCCAGTCCCGCCACTAGTATGAGGTGATTT
196 TGTCTACTGCAACTTCCAGTCCCGCCACTAGTATGAGGTGATTT
14711976 ATCCATTCTGCCCACAAAAGTAAGAGAAAGTAGTGAATCGTTATTTTGTTTTGGCCACAATGCCC
1 ATCCATTCTGCCCACAAAAGTAAGAGAAAGTAGTGAATCGTTATTTTGTTTTGGCCACAATGCCC
14712041 CCAATTGGATTGTGATTGAATGAATTATTATTTTGTCGTTGCATTAGGTCTTCCAAGGAAACAAC
66 CCAATTGGATTGTGATTGAATGAATTATTATTTTGTCGTTGCATTAGGTCTTCCAAGGAAACAAC
14712106 AAAACCCAGATCACCACATCTTCGGGTTGTACAGAGGAAAGAAAGGAGGAAAATAATGAGTACTC
131 AAAACCCAGATCACCACATCTTCGGGTTGTACAGAGGAAAGAAAGGAGGAAAATAATGAGTACTC
14712171 TGTCTACTGCAACTTCCAGTCCCGCCACTAGTATGAGGTGATTT
196 TGTCTACTGCAACTTCCAGTCCCGCCACTAGTATGAGGTGATTT
14712215 TGGTTTGAGG
Statistics
Matches: 239, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
239 239 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (239 bp):
ATCCATTCTGCCCACAAAAGTAAGAGAAAGTAGTGAATCGTTATTTTGTTTTGGCCACAATGCCC
CCAATTGGATTGTGATTGAATGAATTATTATTTTGTCGTTGCATTAGGTCTTCCAAGGAAACAAC
AAAACCCAGATCACCACATCTTCGGGTTGTACAGAGGAAAGAAAGGAGGAAAATAATGAGTACTC
TGTCTACTGCAACTTCCAGTCCCGCCACTAGTATGAGGTGATTT
Found at i:14724109 original size:16 final size:17
Alignment explanation
Indices: 14724088--14724125 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
14724078 TATATTTATG
*
14724088 TATTTA-AATTTTATTT
1 TATTTATAATTTAATTT
14724104 TATTTATAATTTAATTT
1 TATTTATAATTTAATTT
*
14724121 AATTT
1 TATTT
14724126 TTTAATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTTATAATTTAATTT
Found at i:14725254 original size:25 final size:26
Alignment explanation
Indices: 14725215--14725265 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
14725205 CTAATTTCTC
*
14725215 CTTTCTTTCTTTCCCTTTTTC-TTTT
1 CTTTCTTTCTTTCCCTATTTCATTTT
14725240 CTTTCTTT-TTCTCCCTATTTCATTTT
1 CTTTCTTTCTT-TCCCTATTTCATTTT
14725266 TATAATGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 2 0.09
25 17 0.74
26 4 0.17
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.69
Consensus pattern (26 bp):
CTTTCTTTCTTTCCCTATTTCATTTT
Found at i:14725342 original size:16 final size:15
Alignment explanation
Indices: 14725320--14725381 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 15
14725310 TTTACTTATT
14725320 ATAATATATAATATA
1 ATAATATATAATATA
*
14725335 AT-ATATATACTTAATA
1 ATAATATATA-AT-ATA
* *
14725351 ATGAAGATATAATATT
1 AT-AATATATAATATA
14725367 ATAATATTATAATAT
1 ATAATA-TATAATAT
14725382 TTATTTATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
14 7 0.19
15 6 0.16
16 17 0.46
17 1 0.03
18 6 0.16
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (15 bp):
ATAATATATAATATA
Found at i:14725371 original size:8 final size:8
Alignment explanation
Indices: 14725358--14725382 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
14725348 ATAATGAAGA
14725358 TATAATAT
1 TATAATAT
14725366 TATAATAT
1 TATAATAT
14725374 TATAATAT
1 TATAATAT
14725382 T
1 T
14725383 TATTTATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TATAATAT
Found at i:14731463 original size:12 final size:12
Alignment explanation
Indices: 14731446--14731471 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14731436 CTTTCTTTCC
14731446 CTTTTTTCTTTT
1 CTTTTTTCTTTT
14731458 CTTTTTTCTTTT
1 CTTTTTTCTTTT
14731470 CT
1 CT
14731472 CCTTGTTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (12 bp):
CTTTTTTCTTTT
Found at i:14731485 original size:27 final size:25
Alignment explanation
Indices: 14731437--14731486 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
14731427 TTCTCCTTCC
* *
14731437 TTTCTTTCCCTTTTTTCTTTTCTTT
1 TTTCTTTCCCTTGTTTCGTTTCTTT
14731462 TTTCTTTTCTCCTTGTTTCGTTTCT
1 TTTC-TTTC-CCTTGTTTCGTTTCT
14731487 ATCATGTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 4 0.19
26 4 0.19
27 13 0.62
ACGTcount: A:0.00, C:0.24, G:0.04, T:0.72
Consensus pattern (25 bp):
TTTCTTTCCCTTGTTTCGTTTCTTT
Found at i:14732160 original size:15 final size:15
Alignment explanation
Indices: 14732111--14732162 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
14732101 CAATTCAAAT
*
14732111 AATCAATATATATTC
1 AATCAATATAAATTC
*
14732126 AATATATATATACCAATTC
1 AAT-CA-ATATA--AATTC
14732145 AATCAATATAAATTC
1 AATCAATATAAATTC
14732160 AAT
1 AAT
14732163 AAGTTCATCG
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
16 1 0.03
17 10 0.33
18 1 0.03
19 7 0.23
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
AATCAATATAAATTC
Found at i:14737163 original size:20 final size:20
Alignment explanation
Indices: 14737138--14737175 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14737128 TTAATAAATA
*
14737138 ACATTATAATTATATGACAG
1 ACATTATAACTATATGACAG
14737158 ACATTATAACTATATGAC
1 ACATTATAACTATATGAC
14737176 TACGGGTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.34
Consensus pattern (20 bp):
ACATTATAACTATATGACAG
Found at i:14737937 original size:22 final size:22
Alignment explanation
Indices: 14737910--14737952 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14737900 CAAAAATAAT
*
14737910 ATATATG-AATAAATTTATTAAA
1 ATATATGTAA-AAAATTATTAAA
14737932 ATATATGTAAAAAATTATTAA
1 ATATATGTAAAAAATTATTAA
14737953 TATGCCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (22 bp):
ATATATGTAAAAAATTATTAAA
Found at i:14739342 original size:2 final size:2
Alignment explanation
Indices: 14739335--14739360 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14739325 CGAATAGGAA
14739335 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14739361 TAAGAAAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14741175 original size:26 final size:24
Alignment explanation
Indices: 14741120--14741175 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 24
14741110 AAATTACCAT
** *
14741120 TTTTATTTTGAAAAGCTTTTAAAA
1 TTTTATTTTGAAAAAATGTTAAAA
14741144 TGTTTATTTTGAAAAAAATGTTAAATA
1 T-TTTATTTTG-AAAAAATGTTAAA-A
14741171 TTTTA
1 TTTTA
14741176 AAATTAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 1 0.04
25 9 0.35
26 14 0.54
27 2 0.08
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.50
Consensus pattern (24 bp):
TTTTATTTTGAAAAAATGTTAAAA
Found at i:14741275 original size:28 final size:27
Alignment explanation
Indices: 14741225--14741280 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 27
14741215 CTTTTATTAA
*
14741225 TTTAATTTTAAATAAAATTAAAATCATG
1 TTTAATTTTAAATAAAATGAAAA-CATG
*
14741253 TTTAATATTTAATTAAAA-GAAAACATG
1 TTTAAT-TTTAAATAAAATGAAAACATG
14741280 T
1 T
14741281 CTACCCCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 5 0.20
28 10 0.40
29 10 0.40
ACGTcount: A:0.50, C:0.04, G:0.05, T:0.41
Consensus pattern (27 bp):
TTTAATTTTAAATAAAATGAAAACATG
Found at i:14743399 original size:21 final size:22
Alignment explanation
Indices: 14743375--14743415 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
14743365 TTAAAATATG
14743375 TAAATT-TATAAATT-CATTTAA
1 TAAATTAT-TAAATTGCATTTAA
14743396 TAAATTATTAAATTGCATTT
1 TAAATTATTAAATTGCATTT
14743416 TTCGATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (22 bp):
TAAATTATTAAATTGCATTTAA
Found at i:14743518 original size:17 final size:18
Alignment explanation
Indices: 14743488--14743527 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
14743478 AAAATGATAA
*
14743488 TTATATTTAATTATT-TT
1 TTATAGTTAATTATTCTT
*
14743505 TTATAGTTAGTTATTCTT
1 TTATAGTTAATTATTCTT
14743523 TTATA
1 TTATA
14743528 ACAATGATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65
Consensus pattern (18 bp):
TTATAGTTAATTATTCTT
Found at i:14743978 original size:16 final size:15
Alignment explanation
Indices: 14743950--14743987 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
14743940 ATGAAAATTA
14743950 AATTTTA-TTGAAACT
1 AATTTTATTTGAAA-T
14743965 AATTTTATTTGAAAT
1 AATTTTATTTGAAAT
*
14743980 AATATTAT
1 AATTTTAT
14743988 GTATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (15 bp):
AATTTTATTTGAAAT
Found at i:14747480 original size:18 final size:19
Alignment explanation
Indices: 14747457--14747492 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14747447 GGGCAAAATG
14747457 TAATAGAC-AAAATTAATA
1 TAATAGACTAAAATTAATA
*
14747475 TAATAGACTAATATTAAT
1 TAATAGACTAAAATTAAT
14747493 TTTTCCCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.33
Consensus pattern (19 bp):
TAATAGACTAAAATTAATA
Found at i:14757229 original size:39 final size:39
Alignment explanation
Indices: 14757175--14757251 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
14757165 TAGAAGTGGT
14757175 ATATTCATTGTTCATAATTACGGCACTAGTAAAATCTAA
1 ATATTCATTGTTCATAATTACGGCACTAGTAAAATCTAA
14757214 ATATTCATTGTTCATAATTACGGCACTAGTAAAATCTA
1 ATATTCATTGTTCATAATTACGGCACTAGTAAAATCTA
14757252 TCTCATTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (39 bp):
ATATTCATTGTTCATAATTACGGCACTAGTAAAATCTAA
Found at i:14760398 original size:21 final size:21
Alignment explanation
Indices: 14760365--14760410 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
14760355 CCTAGGGCTT
* *
14760365 CACACATATGGTTTGCATATA
1 CACACATAGGGTTTACATATA
*
14760386 CACAGATAGGGTTTACATATA
1 CACACATAGGGTTTACATATA
14760407 CACA
1 CACA
14760411 AATATGTGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (21 bp):
CACACATAGGGTTTACATATA
Found at i:14760427 original size:23 final size:22
Alignment explanation
Indices: 14760365--14760427 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 22
14760355 CCTAGGGCTT
* *
14760365 CACACATA-TGGTTTGCATATA
1 CACAAATAGTGGTTAGCATATA
*
14760386 CACAGATAG-GGTTTA-CATATA
1 CACAAATAGTGG-TTAGCATATA
14760407 CACAAATATGTGGTTAGCATA
1 CACAAATA-GTGGTTAGCATA
14760428 ATAAACATGT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
21 22 0.65
22 6 0.18
23 6 0.18
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (22 bp):
CACAAATAGTGGTTAGCATATA
Found at i:14760503 original size:23 final size:22
Alignment explanation
Indices: 14760473--14760516 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
14760463 GGTTCGCTAC
*
14760473 TACAATATGA-AGGTTTTGCATG
1 TACAATAT-ATAGGGTTTGCATG
14760495 TACACATATATAGGGTTTGCAT
1 TACA-ATATATAGGGTTTGCAT
14760517 AATAACATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.36
Consensus pattern (22 bp):
TACAATATATAGGGTTTGCATG
Found at i:14760524 original size:23 final size:23
Alignment explanation
Indices: 14760498--14760619 Score: 68
Period size: 23 Copynumber: 5.0 Consensus size: 23
14760488 TTGCATGTAC
14760498 ACATATATAGGGTTTGCATAATA
1 ACATATATAGGGTTTGCATAATA
* * *
14760521 ACATGTATAAGGTTTGCATATACA
1 ACATATATAGGGTTTGCATA-ATA
*
14760545 CACGTATATATAAAGAGTTTGCATAGATA
1 -AC--ATATAT--AGGGTTTGCATA-ATA
* ** *
14760574 A-ACATGCAGGGTTCGCAT-ATA
1 ACATATATAGGGTTTGCATAATA
* *
14760595 CACATATATAGGGTTCGCATCATA
1 -ACATATATAGGGTTTGCATAATA
14760619 A
1 A
14760620 ACATTTTTGG
Statistics
Matches: 74, Mismatches: 16, Indels: 18
0.69 0.15 0.17
Matches are distributed among these distances:
21 3 0.04
22 1 0.01
23 42 0.57
24 5 0.07
25 5 0.07
27 5 0.07
28 1 0.01
29 12 0.16
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (23 bp):
ACATATATAGGGTTTGCATAATA
Found at i:14764452 original size:34 final size:34
Alignment explanation
Indices: 14764406--14764476 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
14764396 TGCCACTGAG
*
14764406 TTGAACTATTATAAACGTATTAATTGCTACTGTA
1 TTGAACTATTATAAACATATTAATTGCTACTGTA
* * *
14764440 TTGAACTGTTATAAGCATATTGATTGCTACTGTA
1 TTGAACTATTATAAACATATTAATTGCTACTGTA
14764474 TTG
1 TTG
14764477 TTCTATTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.42
Consensus pattern (34 bp):
TTGAACTATTATAAACATATTAATTGCTACTGTA
Found at i:14764490 original size:34 final size:34
Alignment explanation
Indices: 14764406--14764497 Score: 105
Period size: 34 Copynumber: 2.7 Consensus size: 34
14764396 TGCCACTGAG
*
14764406 TTGAACTATTATAAA-CGTATTAATTGCTACTGTA
1 TTGAACTATTA-AAAGCATATTAATTGCTACTGTA
* * *
14764440 TTGAACTGTTATAAGCATATTGATTGCTACTGTA
1 TTGAACTATTAAAAGCATATTAATTGCTACTGTA
**
14764474 TTGTTCTATTAAAAGCATAATTAA
1 TTGAACTATTAAAAGCAT-ATTAA
14764498 ATACTATCGT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
33 2 0.04
34 41 0.87
35 4 0.09
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (34 bp):
TTGAACTATTAAAAGCATATTAATTGCTACTGTA
Found at i:14765922 original size:33 final size:36
Alignment explanation
Indices: 14765876--14765957 Score: 109
Period size: 35 Copynumber: 2.4 Consensus size: 36
14765866 AAAAAATTAT
*
14765876 TATTTATTATATTATT-AA-TTTGAA-ATTTGAATAA
1 TATTTATTATATTATTAAATTTTGAATA-TTGAAAAA
*
14765910 T-TTTATTTTATTATTAAATTTTGAATATTGAAAAA
1 TATTTATTATATTATTAAATTTTGAATATTGAAAAA
14765945 TATTTATTATATT
1 TATTTATTATATT
14765958 TAAGCTTAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
33 13 0.32
34 3 0.07
35 14 0.34
36 11 0.27
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (36 bp):
TATTTATTATATTATTAAATTTTGAATATTGAAAAA
Found at i:14765993 original size:16 final size:17
Alignment explanation
Indices: 14765967--14766011 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
14765957 TTAAGCTTAA
14765967 GGTGAAAAAAAGTCTTT
1 GGTGAAAAAAAGTCTTT
14765984 GGTGAAAAAAAGTCTTT
1 GGTGAAAAAAAGTCTTT
*
14766001 AGTGAAAAAAA
1 GGTGAAAAAAA
14766012 TTCAATTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.49, C:0.04, G:0.22, T:0.24
Consensus pattern (17 bp):
GGTGAAAAAAAGTCTTT
Found at i:14766378 original size:21 final size:21
Alignment explanation
Indices: 14766352--14766391 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14766342 CATAATATTA
*
14766352 TAAAAAAATATTAAATAATTG
1 TAAAAAAATATAAAATAATTG
*
14766373 TAAAAAATTATAAAATAAT
1 TAAAAAAATATAAAATAAT
14766392 AAAAATTATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (21 bp):
TAAAAAAATATAAAATAATTG
Found at i:14766826 original size:20 final size:21
Alignment explanation
Indices: 14766792--14766830 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14766782 GATCATTTTT
*
14766792 ATTATTTTATAATTTTTTACA
1 ATTATTTAATAATTTTTTACA
14766813 ATTATTTAAT-ATTTTTTA
1 ATTATTTAATAATTTTTTA
14766831 TAATATTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTATTTAATAATTTTTTACA
Found at i:14768842 original size:23 final size:23
Alignment explanation
Indices: 14768787--14768843 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
14768777 ATTGGAATAG
* *
14768787 AATTAACATTTACTGTTTAAAAA
1 AATTAATATTTACTATTTAAAAA
* * *
14768810 AAATATTATTTACTATTTAACAA
1 AATTAATATTTACTATTTAAAAA
*
14768833 ACTTAATATTT
1 AATTAATATTT
14768844 TTGAAATTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.46, C:0.09, G:0.02, T:0.44
Consensus pattern (23 bp):
AATTAATATTTACTATTTAAAAA
Found at i:14781350 original size:11 final size:11
Alignment explanation
Indices: 14781334--14781359 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14781324 CTATTTTTCC
14781334 TTCTCATCTTG
1 TTCTCATCTTG
14781345 TTCTCATCTTG
1 TTCTCATCTTG
14781356 TTCT
1 TTCT
14781360 TAGCTAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.27, G:0.08, T:0.58
Consensus pattern (11 bp):
TTCTCATCTTG
Found at i:14781713 original size:12 final size:12
Alignment explanation
Indices: 14781696--14781720 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14781686 AGACCTGATA
14781696 AAATAAGAAAAC
1 AAATAAGAAAAC
14781708 AAATAAGAAAAC
1 AAATAAGAAAAC
14781720 A
1 A
14781721 TCTCCTGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.08, T:0.08
Consensus pattern (12 bp):
AAATAAGAAAAC
Found at i:14784357 original size:379 final size:379
Alignment explanation
Indices: 14783658--14784402 Score: 1472
Period size: 379 Copynumber: 2.0 Consensus size: 379
14783648 GCATTCAATA
*
14783658 GCAATAAATTATAATGAGAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
1 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
14783723 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
66 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
14783788 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA
131 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA
14783853 TCAACAACAAGAAGGAAAAAAAAAAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
196 TCAACAACAAGAAGGAAAAAAAAAAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
14783918 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
261 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
14783983 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAAAT
326 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAAAT
14784037 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
1 GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
14784102 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
66 AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
14784167 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA
131 ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA
*
14784232 TCAACAACAAGAAGGAAAAAAAAGAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
196 TCAACAACAAGAAGGAAAAAAAAAAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
14784297 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
261 TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
14784362 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAA
326 CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAA
14784403 TCATTTTATT
Statistics
Matches: 364, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
379 364 1.00
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.24
Consensus pattern (379 bp):
GCAATAAATTATAATGAAAACAAGAGATGAACACACAATTGCGTCTGTTGATGTGCATATGTGTG
AGACAAAGAGAGAGGGAGAGGATAAATCAAACCAAATGAAAAAAAGCGAAGAAAGCACAAATTAA
ATCAAATGAAAAGATTCAGAGATTCGTTAACCAAATGAAAAGAAGCAAAGAAAGCACAAATTAAA
TCAACAACAAGAAGGAAAAAAAAAAGCTCACTCTTTCGGTCGTTCATTTCAAAGGAAAAAACTGT
TGCATTCAACACCTGGATTGGGAAGTTTCCCATTCACTTCCCAGGATTATCTTCACTGCTTTTTC
CTCAATTTTGACCCAAATTTCCCCAATCATCTTATTTCTAAGAAACTTACAAAT
Done.