Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 45 of 203
Found at i:14784406 original size:15 final size:15
Alignment explanation
Indices: 14784386--14784417 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14784376 AAATTTCCCC
14784386 AATCATCTTATTTCT
1 AATCATCTTATTTCT
*
14784401 AATCATTTTATTTCT
1 AATCATCTTATTTCT
14784416 AA
1 AA
14784418 GAAACTTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.16, G:0.00, T:0.53
Consensus pattern (15 bp):
AATCATCTTATTTCT
Found at i:14785129 original size:64 final size:64
Alignment explanation
Indices: 14785050--14785196 Score: 285
Period size: 64 Copynumber: 2.3 Consensus size: 64
14785040 TATAGTATTT
14785050 AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
1 AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
*
14785114 AAATTAAAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
1 AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
14785178 AAATTAGAGGATTCGAACT
1 AAATTAGAGGATTCGAACT
14785197 AATATAACAT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 81 1.00
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (64 bp):
AAATTAGAGGATTCGAACTTAAGATTTTAAAATTCTCAAATTTCTAACCTTATTAATTCAATCA
Found at i:14789194 original size:21 final size:21
Alignment explanation
Indices: 14789170--14789225 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
14789160 CATTGTTTTT
*
14789170 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
*
14789191 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
14789212 AATCTCACCGCTAC
1 AATCTCACCGCTAC
14789226 CGCTGTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.30, C:0.39, G:0.09, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:14790789 original size:10 final size:10
Alignment explanation
Indices: 14790774--14790798 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14790764 TCATTCTCCT
14790774 TTTTTTTTTC
1 TTTTTTTTTC
14790784 TTTTTTTTTC
1 TTTTTTTTTC
14790794 TTTTT
1 TTTTT
14790799 AATTACTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:14791392 original size:20 final size:18
Alignment explanation
Indices: 14791357--14791398 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 18
14791347 TTTTTTAGAA
14791357 TTTTTTAATTTCTTATATG
1 TTTTTTAATTTCTTATA-G
14791376 TTTTTCTAAGTTT-TTATAG
1 TTTTT-TAA-TTTCTTATAG
14791395 TTTT
1 TTTT
14791399 GCACTCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 10 0.48
20 8 0.38
21 3 0.14
ACGTcount: A:0.19, C:0.05, G:0.07, T:0.69
Consensus pattern (18 bp):
TTTTTTAATTTCTTATAG
Found at i:14791467 original size:16 final size:17
Alignment explanation
Indices: 14791436--14791468 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
14791426 ATGTACATTT
*
14791436 TATTTATTTTAAAAAAA
1 TATTTATTTGAAAAAAA
14791453 TATTT-TTTGAAAAAAA
1 TATTTATTTGAAAAAAA
14791469 AATATTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
TATTTATTTGAAAAAAA
Found at i:14800066 original size:6 final size:7
Alignment explanation
Indices: 14800050--14800076 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
14800040 CACTTAAATC
14800050 TTTTTAT
1 TTTTTAT
14800057 TTTTTAT
1 TTTTTAT
14800064 TTTTTAT
1 TTTTTAT
14800071 TTTTTA
1 TTTTTA
14800077 ATAGAAACGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTAT
Found at i:14807078 original size:27 final size:29
Alignment explanation
Indices: 14807030--14807083 Score: 94
Period size: 27 Copynumber: 1.9 Consensus size: 29
14807020 TGATTTGACA
14807030 AAAAATATAAATTTAAAAGTTAAAATATG
1 AAAAATATAAATTTAAAAGTTAAAATATG
14807059 AAAAAT-TAAA-TTAAAAGTTAAAATA
1 AAAAATATAAATTTAAAAGTTAAAATA
14807084 AGTATTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 15 0.60
28 4 0.16
29 6 0.24
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.30
Consensus pattern (29 bp):
AAAAATATAAATTTAAAAGTTAAAATATG
Found at i:14807215 original size:8 final size:8
Alignment explanation
Indices: 14807202--14807226 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
14807192 CAAAAGCCAA
14807202 ACATTATT
1 ACATTATT
14807210 ACATTATT
1 ACATTATT
14807218 ACATTATT
1 ACATTATT
14807226 A
1 A
14807227 TTATTCCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (8 bp):
ACATTATT
Found at i:14809784 original size:29 final size:30
Alignment explanation
Indices: 14809709--14809784 Score: 77
Period size: 29 Copynumber: 2.6 Consensus size: 30
14809699 ATTGGACTTG
*
14809709 ATTTTCAAATTTGAAAAGTAGAGGGACTAA
1 ATTTTCAAATTTGAAAAGTAGAAGGACTAA
* * *
14809739 ATTCTTGAAA-AT-AAAAGTATAAGGACTAA
1 ATT-TTCAAATTTGAAAAGTAGAAGGACTAA
*
14809768 ATTTT-AAATTTGTAAAG
1 ATTTTCAAATTTGAAAAG
14809785 AGTACATGGA
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
27 3 0.08
28 3 0.08
29 22 0.59
30 4 0.11
31 5 0.14
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.33
Consensus pattern (30 bp):
ATTTTCAAATTTGAAAAGTAGAAGGACTAA
Found at i:14809944 original size:16 final size:16
Alignment explanation
Indices: 14809913--14809949 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
14809903 ATCTGAAGTA
14809913 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
14809929 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
14809945 TATTA
1 TATTA
14809950 AAATAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:14810049 original size:15 final size:16
Alignment explanation
Indices: 14810026--14810081 Score: 64
Period size: 15 Copynumber: 3.7 Consensus size: 16
14810016 ATATGTATTT
14810026 TTAATAATATTTAAAA
1 TTAATAATATTTAAAA
* *
14810042 TT-ATAATATTTTATA
1 TTAATAATATTTAAAA
14810057 TTAATAAT-TTT-AAA
1 TTAATAATATTTAAAA
*
14810071 TAAATAATATT
1 TTAATAATATT
14810082 CTTCAAACCA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
14 9 0.26
15 18 0.53
16 7 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAATAATATTTAAAA
Found at i:14814849 original size:21 final size:22
Alignment explanation
Indices: 14814825--14814869 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
14814815 AGAAAAAGAG
14814825 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
14814846 AAATCAAAAAGGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
14814868 AA
1 AA
14814870 CAATTTGCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:14818102 original size:14 final size:15
Alignment explanation
Indices: 14818085--14818113 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14818075 ATACTATTTT
14818085 AAAATTA-ATAAATA
1 AAAATTATATAAATA
14818099 AAAATTATATAAATA
1 AAAATTATATAAATA
14818114 TATAAAACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAATTATATAAATA
Found at i:14822649 original size:3 final size:3
Alignment explanation
Indices: 14822641--14822680 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
14822631 TTTTAAGCAC
14822641 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
14822681 TGACCCTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:14831334 original size:23 final size:24
Alignment explanation
Indices: 14831303--14831352 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
14831293 AATTTTGTGT
* *
14831303 CTATCTGTAATATCCCGGAAATTA
1 CTATCTGTAATACCCCGAAAATTA
14831327 CTAT-TGTAATACCCCGAAAATTA
1 CTATCTGTAATACCCCGAAAATTA
14831350 CTA
1 CTA
14831353 CAGTAAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (24 bp):
CTATCTGTAATACCCCGAAAATTA
Found at i:14831358 original size:23 final size:23
Alignment explanation
Indices: 14831309--14831358 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
14831299 GTGTCTATCT
* * **
14831309 GTAATATCCCGGAAATTACTATT
1 GTAATACCCCGAAAATTACTACA
14831332 GTAATACCCCGAAAATTACTACA
1 GTAATACCCCGAAAATTACTACA
14831355 GTAA
1 GTAA
14831359 GAAAGTAGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (23 bp):
GTAATACCCCGAAAATTACTACA
Found at i:14832305 original size:20 final size:21
Alignment explanation
Indices: 14832263--14832317 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
14832253 TTGATATGTT
14832263 AGTGAAGAGAAAATAAGAGAA
1 AGTGAAGAGAAAATAAGAGAA
*
14832284 AGTGATGAG-AAATAATGA-AA
1 AGTGAAGAGAAAATAA-GAGAA
14832304 A--GAA-AGAAAATAAG
1 AGTGAAGAGAAAATAAG
14832318 GGTGTTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
17 3 0.10
18 8 0.27
20 9 0.30
21 10 0.33
ACGTcount: A:0.62, C:0.00, G:0.25, T:0.13
Consensus pattern (21 bp):
AGTGAAGAGAAAATAAGAGAA
Found at i:14833715 original size:23 final size:23
Alignment explanation
Indices: 14833684--14833728 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
14833674 TACAATCAAC
14833684 ATTACACATATC-AACAAGCCATA
1 ATTACACAT-TCAAACAAGCCATA
*
14833707 ATTAGACATTCAAAACAAGCCA
1 ATTACACATTC-AAACAAGCCA
14833729 AAATAAATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 8 0.42
24 9 0.47
ACGTcount: A:0.49, C:0.24, G:0.07, T:0.20
Consensus pattern (23 bp):
ATTACACATTCAAACAAGCCATA
Found at i:14834923 original size:90 final size:90
Alignment explanation
Indices: 14834802--14834982 Score: 263
Period size: 90 Copynumber: 2.0 Consensus size: 90
14834792 AATTCATCCT
* ** *
14834802 TTACATTCGTAGTGCCATAACTTAGTCATGGTATTATCATCAAAATGCCATAGCCCAGCTATGGT
1 TTACATTCATAGTGCCATAACCCAATCATGGTATTATCATCAAAATGCCATAGCCCAGCTATGGT
*
14834867 TTTACATATAAACACTACCATGGTC
66 CTTACATATAAACACTACCATGGTC
* * * *
14834892 TTACATTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGTCATAGCCCAGCTATGGT
1 TTACATTCATAGTGCCATAACCCAATCATGGTATTATCATCAAAATGCCATAGCCCAGCTATGGT
* *
14834957 CTTACATATAAACACTGCCCTGGTC
66 CTTACATATAAACACTACCATGGTC
14834982 T
1 T
14834983 AACCATGGTC
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 80 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (90 bp):
TTACATTCATAGTGCCATAACCCAATCATGGTATTATCATCAAAATGCCATAGCCCAGCTATGGT
CTTACATATAAACACTACCATGGTC
Found at i:14838265 original size:39 final size:39
Alignment explanation
Indices: 14838089--14838257 Score: 257
Period size: 39 Copynumber: 4.3 Consensus size: 39
14838079 CATGTTTTGA
* * * *
14838089 GTATTGTGATATATTCTTGAATGTTATGTGATTAAATAT
1 GTATTGTGATATATGCTTAAATGTTATGTGATTATATGT
*
14838128 GTATTGTGATATATGCTTAAATGTTATGTGATTGTATGT
1 GTATTGTGATATATGCTTAAATGTTATGTGATTATATGT
**
14838167 GTATTGTGATATATGCTTAAATGTTACATGATTATATGT
1 GTATTGTGATATATGCTTAAATGTTATGTGATTATATGT
*
14838206 GTACTGTGATATATGCTTAAATGTTATGTGATTATATGT
1 GTATTGTGATATATGCTTAAATGTTATGTGATTATATGT
*
14838245 GTAATGTGATATA
1 GTATTGTGATATA
14838258 CGTTTAAAAG
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 118 1.00
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.47
Consensus pattern (39 bp):
GTATTGTGATATATGCTTAAATGTTATGTGATTATATGT
Found at i:14860552 original size:36 final size:36
Alignment explanation
Indices: 14860512--14860584 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
14860502 AACGAATCCT
*
14860512 ATATACTTGACATTGCAAAATCTACACATCCAGATC
1 ATATAATTGACATTGCAAAATCTACACATCCAGATC
*
14860548 ATATAATTGACATTGCAAAATCTCCACATCCAGATC
1 ATATAATTGACATTGCAAAATCTACACATCCAGATC
14860584 A
1 A
14860585 CAATGTGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.40, C:0.25, G:0.08, T:0.27
Consensus pattern (36 bp):
ATATAATTGACATTGCAAAATCTACACATCCAGATC
Found at i:14870438 original size:16 final size:15
Alignment explanation
Indices: 14870417--14870448 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
14870407 AAAAAAAAAC
14870417 AATAACAATAATTAAT
1 AATAACAATAA-TAAT
14870433 AATAACAATAATAAT
1 AATAACAATAATAAT
14870448 A
1 A
14870449 TGAAATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (15 bp):
AATAACAATAATAAT
Found at i:14870868 original size:11 final size:11
Alignment explanation
Indices: 14870852--14870880 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
14870842 GTACCCCTAT
14870852 AAATTTCAAAA
1 AAATTTCAAAA
14870863 AAATTTC-AAA
1 AAATTTCAAAA
14870873 AAATTTCA
1 AAATTTCA
14870881 TTTTCCTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (11 bp):
AAATTTCAAAA
Found at i:14871808 original size:55 final size:55
Alignment explanation
Indices: 14871725--14872015 Score: 217
Period size: 55 Copynumber: 5.4 Consensus size: 55
14871715 TAGACTAAGG
* * * *
14871725 GGGTGTCGGCTATCAGTGTCCCAGCACCCAATTTTTTTTAAAAAATTTGGTACAA
1 GGGTGCCGGCCATCAGTGTCCCAACACCCAATTTTTTTTAAAAAATCTGGTACAA
** * ** * *
14871780 GGGTGTTGGTCATCAGTGTCTTAACACCCAATTTTTTTAAAAAAATCTGGTACTA
1 GGGTGCCGGCCATCAGTGTCCCAACACCCAATTTTTTTTAAAAAATCTGGTACAA
* * *
14871835 GGGTGCCGGCCATCAGTGTCCCAACACCCTAATTTTTTTT--TAAATTTGATA-AA
1 GGGTGCCGGCCATCAGTGTCCCAACACCC-AATTTTTTTTAAAAAATCTGGTACAA
* * * *
14871888 TGGGTGTCGGCCATTAGTGTCCCAGCACCCAAAATGTTTTTTT---TAATCTGGTACAA
1 -GGGTGCCGGCCATCAGTGTCCCAACACCC--AAT-TTTTTTTAAAAAATCTGGTACAA
* * * * * * **
14871944 GGGTGTCAGG-CATCATTGTTCCAAAATCCAATTTTTTTT----AATATGGTACCG
1 GGGTG-CCGGCCATCAGTGTCCCAACACCCAATTTTTTTTAAAAAATCTGGTACAA
14871995 GGGTGCCGGCCATCAGTGTCC
1 GGGTGCCGGCCATCAGTGTCC
14872016 TAGTGTCACG
Statistics
Matches: 189, Mismatches: 40, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
50 3 0.02
51 23 0.12
52 7 0.04
53 4 0.02
54 34 0.18
55 98 0.52
56 20 0.11
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (55 bp):
GGGTGCCGGCCATCAGTGTCCCAACACCCAATTTTTTTTAAAAAATCTGGTACAA
Found at i:14884538 original size:27 final size:27
Alignment explanation
Indices: 14884500--14884569 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
14884490 AAAAATAAAA
14884500 ATTTATCAAAATAT-TATAATTTTTTTT
1 ATTTATCAAAATATATATAA-TTTTTTT
*
14884527 ATTTACCAAAATATATATAATTTTTTT
1 ATTTATCAAAATATATATAATTTTTTT
14884554 ATTTATCAAAATATAT
1 ATTTATCAAAATATAT
14884570 CAAAAAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 35 0.88
28 5 0.12
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (27 bp):
ATTTATCAAAATATATATAATTTTTTT
Found at i:14884741 original size:18 final size:19
Alignment explanation
Indices: 14884710--14884745 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
14884700 TGGGGGGCAG
14884710 AAGGAGAGGGAAAGAAAAA
1 AAGGAGAGGGAAAGAAAAA
14884729 AAGGAGA-GGAAAGAAAA
1 AAGGAGAGGGAAAGAAAA
14884746 GGAAAGGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (19 bp):
AAGGAGAGGGAAAGAAAAA
Found at i:14884747 original size:15 final size:15
Alignment explanation
Indices: 14884718--14884858 Score: 58
Period size: 15 Copynumber: 10.0 Consensus size: 15
14884708 AGAAGGAGAG
14884718 GGAAA-GAAA-AAAA
1 GGAAAGGAAAGAAAA
*
14884731 GGAGAGGAAAGAAAA
1 GGAAAGGAAAGAAAA
14884746 GGAAAGGATAAGAGAAA
1 GGAAAGGA-AAGA-AAA
* *
14884763 --AAAAGAAA-TAAA
1 GGAAAGGAAAGAAAA
*
14884775 -G-AAGAAGAAGAAAA
1 GGAAAGGA-AAGAAAA
* *
14884789 TGAAAAGAGAAG-AAA
1 GGAAAGGA-AAGAAAA
14884804 --AAA-GAAAG-AAA
1 GGAAAGGAAAGAAAA
14884815 -G-AAGGAAAGAAAA
1 GGAAAGGAAAGAAAA
*
14884828 GGAAAGGAGAAGAAGA
1 GGAAAGGA-AAGAAAA
* *
14884844 GGGAAGGAAGGAAAA
1 GGAAAGGAAAGAAAA
14884859 AAAAAAGGTA
Statistics
Matches: 100, Mismatches: 13, Indels: 28
0.71 0.09 0.20
Matches are distributed among these distances:
11 8 0.08
12 13 0.13
13 12 0.12
14 10 0.10
15 30 0.30
16 24 0.24
17 3 0.03
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02
Consensus pattern (15 bp):
GGAAAGGAAAGAAAA
Found at i:14884777 original size:16 final size:15
Alignment explanation
Indices: 14884758--14884827 Score: 52
Period size: 16 Copynumber: 4.4 Consensus size: 15
14884748 AAAGGATAAG
14884758 AGAAAAAAAGAAATAA
1 AGAAAAAAAGAAA-AA
*
14884774 AGAAGAAGAAG-AAAA
1 AGAA-AAAAAGAAAAA
*
14884789 TGAAAAGAGAAGAAAAA
1 AGAAAA-A-AAGAAAAA
* *
14884806 AGAAAGAAAGAAGGAA
1 AGAAAAAAAGAA-AAA
14884822 AGAAAA
1 AGAAAA
14884828 GGAAAGGAGA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
14 2 0.05
15 10 0.24
16 17 0.40
17 13 0.31
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (15 bp):
AGAAAAAAAGAAAAA
Found at i:14884785 original size:17 final size:16
Alignment explanation
Indices: 14884765--14884813 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 16
14884755 AAGAGAAAAA
14884765 AAGAAATAAAGAAGAAG
1 AAGAAATAAAGAAG-AG
*
14884782 AAGAAAATGAA-AAGAG
1 AAG-AAATAAAGAAGAG
14884798 AAGAAA-AAAGAA-AG
1 AAGAAATAAAGAAGAG
14884812 AA
1 AA
14884814 AGAAGGAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
14 6 0.21
15 5 0.18
16 5 0.18
17 6 0.21
18 6 0.21
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.04
Consensus pattern (16 bp):
AAGAAATAAAGAAGAG
Found at i:14884812 original size:44 final size:45
Alignment explanation
Indices: 14884719--14884841 Score: 118
Period size: 43 Copynumber: 2.9 Consensus size: 45
14884709 GAAGGAGAGG
* * * * *
14884719 GAAAGAAAAAAAGGAGAGGAAAGAAAAGGAAAGGATAAGAGAAAA
1 GAAAGAAAAAAAGAAGAAGAAAGAAAAGGAAAAGAGAAGAAAAAA
* *
14884764 -AAAGAAATAAAGAAGAAG-AAGAAAATGAAAAGAGAAGAAAAAA
1 GAAAGAAAAAAAGAAGAAGAAAGAAAAGGAAAAGAGAAGAAAAAA
*
14884807 GAAAG----AAAGAAG--GAAAGAAAAGGAAAGGAGAAGAA
1 GAAAGAAAAAAAGAAGAAGAAAGAAAAGGAAAAGAGAAGAA
14884842 GAGGGAAGGA
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
38 1 0.01
39 19 0.28
40 7 0.10
43 21 0.31
44 19 0.28
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.02
Consensus pattern (45 bp):
GAAAGAAAAAAAGAAGAAGAAAGAAAAGGAAAAGAGAAGAAAAAA
Found at i:14884813 original size:33 final size:33
Alignment explanation
Indices: 14884758--14884828 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
14884748 AAAGGATAAG
14884758 AGAAAA-A-AAGAAATAAAGAAG-AAGAAGAAA
1 AGAAAAGAGAAGAAATAAAGAAGAAAGAAGAAA
*
14884788 ATGAAAAGAGAAGAAA-AAAGAAAGAAAGAAGGAA
1 A-GAAAAGAGAAGAAATAAAG-AAGAAAGAAGAAA
14884822 AGAAAAG
1 AGAAAAG
14884829 GAAAGGAGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
30 1 0.03
31 5 0.14
32 5 0.14
33 15 0.43
34 9 0.26
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (33 bp):
AGAAAAGAGAAGAAATAAAGAAGAAAGAAGAAA
Found at i:14884850 original size:16 final size:15
Alignment explanation
Indices: 14884815--14884858 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
14884805 AAGAAAGAAA
14884815 GAAGGAAAGAAAAGG
1 GAAGGAAAGAAAAGG
* *
14884830 AAAGGAGAAGAAGAGG
1 GAAGGA-AAGAAAAGG
*
14884846 GAAGGAAGGAAAA
1 GAAGGAAAGAAAA
14884859 AAAAAAGGTA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (15 bp):
GAAGGAAAGAAAAGG
Found at i:14884890 original size:18 final size:19
Alignment explanation
Indices: 14884867--14884911 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
14884857 AAAAAAAAGG
14884867 TAATTTTATT-TATAAATT
1 TAATTTTATTGTATAAATT
*
14884885 TAATTTTTTTTGTATAAATT
1 TAA-TTTTATTGTATAAATT
14884905 TAATTTT
1 TAATTTT
14884912 TTTTGTAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 3 0.12
19 10 0.42
20 11 0.46
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TAATTTTATTGTATAAATT
Found at i:14884912 original size:21 final size:20
Alignment explanation
Indices: 14884877--14884918 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
14884867 TAATTTTATT
14884877 TATAAATTTAATTTTTTTTG
1 TATAAATTTAATTTTTTTTG
14884897 TATAAATTTAATTTTTTTTG
1 TATAAATTTAATTTTTTTTG
14884917 TA
1 TA
14884919 ACATTTGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (20 bp):
TATAAATTTAATTTTTTTTG
Found at i:14888278 original size:21 final size:21
Alignment explanation
Indices: 14888254--14888312 Score: 51
Period size: 21 Copynumber: 3.1 Consensus size: 21
14888244 CGGTTCTTCA
14888254 GCCCCGTCTTCTTCATCAGAT
1 GCCCCGTCTTCTTCATCAGAT
*
14888275 GCCCACG-GTTC-T--TC--A-
1 GCCC-CGTCTTCTTCATCAGAT
14888290 GCCCCGTCTTCTTCATCAGAT
1 GCCCCGTCTTCTTCATCAGAT
14888311 GC
1 GC
14888313 ATTAACATCT
Statistics
Matches: 28, Mismatches: 2, Indels: 16
0.61 0.04 0.35
Matches are distributed among these distances:
14 2 0.07
15 7 0.25
16 2 0.07
18 4 0.14
20 2 0.07
21 9 0.32
22 2 0.07
ACGTcount: A:0.14, C:0.39, G:0.17, T:0.31
Consensus pattern (21 bp):
GCCCCGTCTTCTTCATCAGAT
Found at i:14888291 original size:36 final size:36
Alignment explanation
Indices: 14888244--14888312 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
14888234 CCACCATCCG
14888244 CGGTTCTTCAGCCCCGTCTTCTTCATCAGATGCCCA
1 CGGTTCTTCAGCCCCGTCTTCTTCATCAGATGCCCA
14888280 CGGTTCTTCAGCCCCGTCTTCTTCATCAGATGC
1 CGGTTCTTCAGCCCCGTCTTCTTCATCAGATGC
14888313 ATTAACATCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.13, C:0.38, G:0.17, T:0.32
Consensus pattern (36 bp):
CGGTTCTTCAGCCCCGTCTTCTTCATCAGATGCCCA
Found at i:14888964 original size:3 final size:3
Alignment explanation
Indices: 14888956--14888987 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
14888946 TCTTAATACT
*
14888956 AAC AAC AAC AAC AAC AAT AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
14888988 TAATAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.28, G:0.00, T:0.03
Consensus pattern (3 bp):
AAC
Found at i:14888979 original size:15 final size:15
Alignment explanation
Indices: 14888959--14888990 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
14888949 TAATACTAAC
14888959 AACAACAACAACAAT
1 AACAACAACAACAAT
14888974 AACAACAACAACAAT
1 AACAACAACAACAAT
14888989 AA
1 AA
14888991 TAATAATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.69, C:0.25, G:0.00, T:0.06
Consensus pattern (15 bp):
AACAACAACAACAAT
Found at i:14889134 original size:10 final size:11
Alignment explanation
Indices: 14889117--14889145 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
14889107 AAAAAAATAC
14889117 CTTCTTTTTCT
1 CTTCTTTTTCT
14889128 C-TCTTTTTCT
1 CTTCTTTTTCT
14889138 CTTCTTTT
1 CTTCTTTT
14889146 CCGCAGCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (11 bp):
CTTCTTTTTCT
Found at i:14889318 original size:27 final size:27
Alignment explanation
Indices: 14889235--14889319 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
14889225 CCAATGAGTA
14889235 TGGCACCATTGGTGCCGCCAATGACAT
1 TGGCACCATTGGTGCCGCCAATGACAT
* ***
14889262 TGACACCATTGGTGCCGCCAATGGTTT
1 TGGCACCATTGGTGCCGCCAATGACAT
* *
14889289 TGGCACCTTTGGTGCCGCCAATGCCAT
1 TGGCACCATTGGTGCCGCCAATGACAT
14889316 TGGC
1 TGGC
14889320 GTGACAAAGG
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.18, C:0.29, G:0.27, T:0.26
Consensus pattern (27 bp):
TGGCACCATTGGTGCCGCCAATGACAT
Found at i:14889406 original size:27 final size:27
Alignment explanation
Indices: 14889368--14889439 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
14889358 GCAGTTTTTT
*
14889368 TTAT-ATATTTTGGTAAAT-AAAAAAT
1 TTATAATATTTTGGTAAATAAAAAAAG
*
14889393 TTATATCTATTTTGGTAAATAAAAAAAG
1 TTATA-ATATTTTGGTAAATAAAAAAAG
14889421 TTATAATATTTTGGTAAAT
1 TTATAATATTTTGGTAAAT
14889440 TTTTATTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
25 4 0.10
27 26 0.63
28 11 0.27
ACGTcount: A:0.44, C:0.01, G:0.10, T:0.44
Consensus pattern (27 bp):
TTATAATATTTTGGTAAATAAAAAAAG
Found at i:14890278 original size:22 final size:22
Alignment explanation
Indices: 14890253--14890294 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
14890243 AATTTAAGAG
14890253 TTTTTTAGAAAAAA-ATAATTAA
1 TTTTTTA-AAAAAATATAATTAA
14890275 TTTTTTAAAAAAATATAATT
1 TTTTTTAAAAAAATATAATT
14890295 TTAAATGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
TTTTTTAAAAAAATATAATTAA
Found at i:14893833 original size:27 final size:26
Alignment explanation
Indices: 14893803--14893867 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 26
14893793 TTTAACAGTA
* *
14893803 ACAGTACAGTGTGGGCCTTAGCCCAAT
1 ACAGTACAGTGT-GACCTAAGCCCAAT
*
14893830 ACAGAAACAGTGTGACCTAAGCCCAAT
1 ACAG-TACAGTGTGACCTAAGCCCAAT
14893857 ACAGTATCAGT
1 ACAGTA-CAGT
14893868 ATGGTGCAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.03
27 24 0.75
28 7 0.22
ACGTcount: A:0.34, C:0.25, G:0.22, T:0.20
Consensus pattern (26 bp):
ACAGTACAGTGTGACCTAAGCCCAAT
Found at i:14893843 original size:28 final size:27
Alignment explanation
Indices: 14893808--14893860 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
14893798 CAGTAACAGT
* *
14893808 ACAGTGTGGGCCTTAGCCCAATACAGAA
1 ACAGTGT-GACCTAAGCCCAATACAGAA
14893836 ACAGTGTGACCTAAGCCCAATACAG
1 ACAGTGTGACCTAAGCCCAATACAG
14893861 TATCAGTATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.34, C:0.26, G:0.23, T:0.17
Consensus pattern (27 bp):
ACAGTGTGACCTAAGCCCAATACAGAA
Found at i:14894050 original size:22 final size:21
Alignment explanation
Indices: 14893996--14894058 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 21
14893986 TGCCAGTAGT
*
14893996 CAGAATGGCTAAGAGCCGTAAA
1 CAGAATGGCTAA-AGCCATAAA
* * *
14894018 CAGGATAGCTATAAGCTATAAA
1 CAGAATGGCTA-AAGCCATAAA
14894040 CAGAATGGCTACAAGCCAT
1 CAGAATGGCTA-AAGCCAT
14894059 CAGTACAGTA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.22, T:0.17
Consensus pattern (21 bp):
CAGAATGGCTAAAGCCATAAA
Found at i:14894137 original size:32 final size:32
Alignment explanation
Indices: 14894052--14894254 Score: 221
Period size: 32 Copynumber: 6.4 Consensus size: 32
14894042 GAATGGCTAC
* * * *
14894052 AAGCCATCAGT-ACAGTAGTATGATTGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGTACA
* ** * **
14894083 AAGCCATCAGTAGCAATGATATGGCCGGTACA
1 AAGCCATCAGTAACGGTAATATGATCGGTACA
14894115 CAA-CCATCAGTAACGGTAATATGATCGGTACA
1 -AAGCCATCAGTAACGGTAATATGATCGGTACA
* *
14894147 AAGCCATCAGTAATGGTAATATGATCGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGTACA
* * **
14894179 AAGCTATAAGTAACGGTAATATGATTAGTACA
1 AAGCCATCAGTAACGGTAATATGATCGGTACA
* *
14894211 AAGCCATCAGTAACGATAATATGATCGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGTACA
14894243 AAGCCATCAGTA
1 AAGCCATCAGTA
14894255 GCATCCCAGC
Statistics
Matches: 141, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
31 13 0.09
32 126 0.89
33 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.22
Consensus pattern (32 bp):
AAGCCATCAGTAACGGTAATATGATCGGTACA
Found at i:14894328 original size:27 final size:27
Alignment explanation
Indices: 14894298--14894354 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
14894288 AACAAAGCTG
*
14894298 CCAGTAATAGT-ATATGTGGTCA-AGCCA
1 CCAGTAACAGTAAT-TGTGG-CAGAGCCA
14894325 CCAGTAACAGTAATTGTGGCAGAGCCA
1 CCAGTAACAGTAATTGTGGCAGAGCCA
14894352 CCA
1 CCA
14894355 ATATAATACT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 2 0.07
27 23 0.85
28 2 0.07
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (27 bp):
CCAGTAACAGTAATTGTGGCAGAGCCA
Found at i:14894453 original size:24 final size:23
Alignment explanation
Indices: 14894426--14894507 Score: 83
Period size: 24 Copynumber: 3.5 Consensus size: 23
14894416 CCATGCTCAG
*
14894426 AATCAGTCATTCAAATCACAGACA
1 AATCAATCATTCAAA-CACAGACA
* *
14894450 AATCAATCATACCAAACACAGACG
1 AATCAATCAT-TCAAACACAGACA
* * * *
14894474 AATCAGTCATTTAACCACAGGCA
1 AATCAATCATTCAAACACAGACA
14894497 AATCAATCATT
1 AATCAATCATT
14894508 TGACCTCGAG
Statistics
Matches: 47, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
23 18 0.38
24 25 0.53
25 4 0.09
ACGTcount: A:0.45, C:0.26, G:0.09, T:0.21
Consensus pattern (23 bp):
AATCAATCATTCAAACACAGACA
Found at i:14894579 original size:27 final size:26
Alignment explanation
Indices: 14894547--14894724 Score: 167
Period size: 27 Copynumber: 6.6 Consensus size: 26
14894537 TCACTAGGGC
* *
14894547 ATTACGATCATTTTACCTTACATAGGT
1 ATTACGGTCATTTTACCCTACA-AGGT
* *
14894574 ATTACGGTCATTCTACCCTACAGGGGT
1 ATTACGGTCATTTTACCCTACA-AGGT
* * * *
14894601 ATTACGATTATTTTACCTTATAGAGGT
1 ATTACGGTCATTTTACCCTACA-AGGT
* *
14894628 ATTATGGTTATTTTACCCTACAAGGGT
1 ATTACGGTCATTTTACCCTACAA-GGT
* * *
14894655 AATACGGTCATTTTACCCTACAGGGAC
1 ATTACGGTCATTTTACCCTACAAGG-T
14894682 ATTACGGTCATTTTACCCTACAAGGGT
1 ATTACGGTCATTTTACCCTACAA-GGT
**
14894709 ATTATAGTCATTTTAC
1 ATTACGGTCATTTTAC
14894725 AACCTTTTCA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 3 0.02
27 118 0.96
28 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (26 bp):
ATTACGGTCATTTTACCCTACAAGGT
Found at i:14894607 original size:54 final size:53
Alignment explanation
Indices: 14894542--14894712 Score: 207
Period size: 54 Copynumber: 3.2 Consensus size: 53
14894532 TTTACTCACT
* *
14894542 AGGGCATTACGATCATTTTACCTTACATAGGTATTACGGTCATTCTACCCTACA
1 AGGGTATTACGATCATTTTACCTTACA-AGGTATTACGGTCATTTTACCCTACA
* * * * *
14894596 GGGGTATTACGATTATTTTACCTTATAGAGGTATTATGGTTATTTTACCCTACA
1 AGGGTATTACGATCATTTTACCTTACA-AGGTATTACGGTCATTTTACCCTACA
* * * * *
14894650 AGGGTAATACGGTCATTTTACCCTACAGGGACATTACGGTCATTTTACCCTACA
1 AGGGTATTACGATCATTTTACCTTACAAGG-TATTACGGTCATTTTACCCTACA
14894704 AGGGTATTA
1 AGGGTATTA
14894713 TAGTCATTTT
Statistics
Matches: 97, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 2 0.02
54 95 0.98
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (53 bp):
AGGGTATTACGATCATTTTACCTTACAAGGTATTACGGTCATTTTACCCTACA
Found at i:14894662 original size:81 final size:81
Alignment explanation
Indices: 14894554--14894724 Score: 211
Period size: 81 Copynumber: 2.1 Consensus size: 81
14894544 GGCATTACGA
* * ** * *
14894554 TCATTTTACCTTACATAGGTATTACGGTCATTCTACCCTACAGGGGTATTACGATTATTTTACCT
1 TCATTTTACCCTACATAGGTAATACGGTCATTCTACCCTACAGGGACATTACGATCATTTTACCC
* *
14894619 TA-TAGAGGTATTATGG
66 TACAAG-GGTATTATAG
* * *
14894635 TTATTTTACCCTACA-AGGGTAATACGGTCATTTTACCCTACAGGGACATTACGGTCATTTTACC
1 TCATTTTACCCTACATA-GGTAATACGGTCATTCTACCCTACAGGGACATTACGATCATTTTACC
14894699 CTACAAGGGTATTATAG
65 CTACAAGGGTATTATAG
14894716 TCATTTTAC
1 TCATTTTAC
14894725 AACCTTTTCA
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
80 1 0.01
81 73 0.96
82 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.37
Consensus pattern (81 bp):
TCATTTTACCCTACATAGGTAATACGGTCATTCTACCCTACAGGGACATTACGATCATTTTACCC
TACAAGGGTATTATAG
Found at i:14905659 original size:18 final size:18
Alignment explanation
Indices: 14905638--14905675 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14905628 CTTCTACCCT
14905638 TTCCCCTTTCCCTTCCCC
1 TTCCCCTTTCCCTTCCCC
*
14905656 TTCCCTTTTCCCTTCCCC
1 TTCCCCTTTCCCTTCCCC
14905674 TT
1 TT
14905676 GGATTGCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (18 bp):
TTCCCCTTTCCCTTCCCC
Found at i:14905769 original size:25 final size:25
Alignment explanation
Indices: 14905735--14905784 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
14905725 CAGGTAAGGC
*
14905735 TCCTTCTTCTTCTTCCGTTTTTCAT
1 TCCTTCTTCTTCTTCCGTTCTTCAT
* *
14905760 TCCTTTTTCTTCTTCTGTTCTTCAT
1 TCCTTCTTCTTCTTCCGTTCTTCAT
14905785 CTTCTCTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.04, C:0.30, G:0.04, T:0.62
Consensus pattern (25 bp):
TCCTTCTTCTTCTTCCGTTCTTCAT
Found at i:14909153 original size:15 final size:15
Alignment explanation
Indices: 14909114--14909166 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 15
14909104 GAACATTTGG
14909114 AATTTAATTAGATAAAA
1 AATTT-ATTA-ATAAAA
14909131 AACTTTTATTAATAAAA
1 AA--TTTATTAATAAAA
*
14909148 AATTTATTTATAAATA
1 AATTTATTAATAAA-A
14909164 AAT
1 AAT
14909167 CATTGCAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 11 0.34
16 4 0.12
17 10 0.31
18 4 0.12
19 3 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (15 bp):
AATTTATTAATAAAA
Found at i:14909221 original size:22 final size:21
Alignment explanation
Indices: 14909197--14909240 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
14909187 TAATTTAAAA
*
14909197 TATAAAAATTTATTA-ATATG
1 TATATAAATTTATTAGATATG
14909217 TATATAAATTTATTAGTATATG
1 TATATAAATTTATTAG-ATATG
14909239 TA
1 TA
14909241 AAAACAACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 14 0.67
22 7 0.33
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (21 bp):
TATATAAATTTATTAGATATG
Found at i:14909359 original size:20 final size:20
Alignment explanation
Indices: 14909334--14909373 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14909324 AATATTTTCC
*
14909334 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
14909354 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
14909374 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:14909379 original size:34 final size:35
Alignment explanation
Indices: 14909322--14909388 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
14909312 CAAACACTAG
*
14909322 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
14909357 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
14909389 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:14909380 original size:14 final size:14
Alignment explanation
Indices: 14909357--14909396 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
14909347 ACAGAAAAGT
*
14909357 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
14909371 AAATCATTTTACGG
1 AAAACATTTTACAG
14909385 AAAACATTTTAC
1 AAAACATTTTAC
14909397 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:14917214 original size:12 final size:12
Alignment explanation
Indices: 14917197--14917221 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14917187 AAATTTGATG
14917197 TTGTTATTATTA
1 TTGTTATTATTA
14917209 TTGTTATTATTA
1 TTGTTATTATTA
14917221 T
1 T
14917222 AATTGCTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TTGTTATTATTA
Found at i:14919262 original size:109 final size:109
Alignment explanation
Indices: 14919049--14919479 Score: 645
Period size: 109 Copynumber: 4.0 Consensus size: 109
14919039 AAGGAAAATT
* * * * *
14919049 TTTCTAAATGAGGCAATATTTAGCGTTTGGAAATTCGAGAAAACGTGTCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* *
14919114 CGATTTTTCTCATTCAACCAAATAGCTAAGTATCCTTTTAAAAA
66 CGATTTTTCTCATTCAACCAAATAGCCAAATATCCTTTTAAAAA
* * *
14919158 TTTCAAAATAAGACAATGTTTTGCGTTTGAAAATTCGAGAAAACGTGCCCTAATGTGTTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* * * *
14919223 TGATTTTTCTCGTTCAACCAAATAGCTAAGTATCCTTTTAAAAA
66 CGATTTTTCTCATTCAACCAAATAGCCAAATATCCTTTTAAAAA
*
14919267 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGTCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* *
14919332 CGATTTTTCTCATTTAACCAAATAGCCAAATATCCTTTCAAAAA
66 CGATTTTTCTCATTCAACCAAATAGCCAAATATCCTTTTAAAAA
*
14919376 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAATGTGCTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
* *
14919440 CGATTTCTTGT--TT-AACCAAATAGCCAAATATCCTCTTAAA
66 CGATTT-TTCTCATTCAACCAAATAGCCAAATATCCTTTTAAA
14919480 TTTTAATCCA
Statistics
Matches: 296, Mismatches: 25, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
106 25 0.08
107 2 0.01
108 29 0.10
109 240 0.81
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.35
Consensus pattern (109 bp):
TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
CGATTTTTCTCATTCAACCAAATAGCCAAATATCCTTTTAAAAA
Found at i:14923957 original size:3 final size:3
Alignment explanation
Indices: 14923949--14923974 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14923939 TTCAGAAGCT
14923949 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
14923975 TTTGTGTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:14935098 original size:25 final size:25
Alignment explanation
Indices: 14935047--14935098 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
14935037 ATAATGATAT
* * * *
14935047 ATCCTGATAATGAAATGTTATTTTG
1 ATCCTGATAATCAAATATAATTCTG
14935072 ATCCTGATAATCAAATATAATTCTG
1 ATCCTGATAATCAAATATAATTCTG
14935097 AT
1 AT
14935099 TTTGATCATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (25 bp):
ATCCTGATAATCAAATATAATTCTG
Found at i:14944805 original size:27 final size:27
Alignment explanation
Indices: 14944775--14944827 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
14944765 GTCGATAGTG
14944775 TGATAGACTAAGCTGACGATCCCCGAA
1 TGATAGACTAAGCTGACGATCCCCGAA
*
14944802 TGATAGACTATGCTGACGATCCCCGA
1 TGATAGACTAAGCTGACGATCCCCGA
14944828 GCTCGTAACG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (27 bp):
TGATAGACTAAGCTGACGATCCCCGAA
Found at i:14945089 original size:41 final size:41
Alignment explanation
Indices: 14945027--14945161 Score: 207
Period size: 41 Copynumber: 3.3 Consensus size: 41
14945017 AATTTAACAT
* * *
14945027 ATTCAGATCACCGGCACTTAGCCTGTTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
* * * *
14945068 ATTCATATCACCGACATTTAGCCTACTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
14945109 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
14945150 ATTCAGATCACC
1 ATTCAGATCACC
14945162 AATTCCAAAC
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 83 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
Found at i:14945388 original size:41 final size:41
Alignment explanation
Indices: 14945331--14945425 Score: 181
Period size: 41 Copynumber: 2.3 Consensus size: 41
14945321 TTCGTTCCTT
14945331 TGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCC
1 TGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCC
14945372 TGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCC
1 TGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCC
*
14945413 CGATTCAGATCAC
1 TGATTCAGATCAC
14945426 AAATTTCAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (41 bp):
TGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCC
Found at i:14947075 original size:43 final size:43
Alignment explanation
Indices: 14946952--14947078 Score: 175
Period size: 43 Copynumber: 3.0 Consensus size: 43
14946942 CGAAGGAAAT
* *
14946952 ATATTGGCACACATAGTGCATCATC-GAATAAACCAAAACAATC
1 ATATTGGCACACATAGTGCATCATCAG-ATAAACCGAAGCAATC
* * *
14946995 ATACTAGCACACATAGTGCATCTTCAGATAAACCGAAGCAATC
1 ATATTGGCACACATAGTGCATCATCAGATAAACCGAAGCAATC
* *
14947038 ATATTGGCACACATAGTGTATCATCAGATAAATCGAAGCAA
1 ATATTGGCACACATAGTGCATCATCAGATAAACCGAAGCAA
14947079 ATAAATTGAC
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
43 72 0.99
44 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (43 bp):
ATATTGGCACACATAGTGCATCATCAGATAAACCGAAGCAATC
Found at i:14950208 original size:43 final size:43
Alignment explanation
Indices: 14950155--14950378 Score: 281
Period size: 43 Copynumber: 5.2 Consensus size: 43
14950145 TTCTAGAAAT
*
14950155 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAAAAAC
* * * *
14950198 GCCGCTAAAGACCACGACCTTTAGCGGCACTTCTCCCACAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAAAAAC
* * *
14950241 ACCGCTAAAGACCAAGACCTTTAGCGGCACTATTT-CCATAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCT-TTTCCCAAAAAC
* *
14950284 GCCGCTATAGACCATGACCTTTAGCGGCGCTTTTTCCCAAAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGC-TTTTCCCAAAAAC
* * * **
14950328 GCCGCTAAAGAACAA-ACCTTTAGCGACGCTTCTAGCAAAAAC
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAAAAAC
14950370 GCCGCTAAA
1 GCCGCTAAA
14950379 AACATAATCT
Statistics
Matches: 159, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
42 19 0.12
43 118 0.74
44 22 0.14
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (43 bp):
GCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAAAAAC
Found at i:14954283 original size:21 final size:21
Alignment explanation
Indices: 14954240--14954280 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
14954230 CTTAACTCTT
*
14954240 AACCCTTAAACCTTAAATCCC
1 AACCCTTAAACCATAAATCCC
14954261 AACCCTTAAACCAT-AATCCC
1 AACCCTTAAACCATAAATCCC
14954281 CAAATCCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.22
Consensus pattern (21 bp):
AACCCTTAAACCATAAATCCC
Found at i:14954571 original size:20 final size:21
Alignment explanation
Indices: 14954543--14954582 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
14954533 CTAGTTAATC
*
14954543 TAAATCCT-AAACCATAAACT
1 TAAACCCTAAAACCATAAACT
14954563 TAAACCCTAAAACCATAAAC
1 TAAACCCTAAAACCATAAAC
14954583 CCTTAACACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.53, C:0.28, G:0.00, T:0.20
Consensus pattern (21 bp):
TAAACCCTAAAACCATAAACT
Found at i:14954612 original size:15 final size:14
Alignment explanation
Indices: 14954550--14954654 Score: 63
Period size: 14 Copynumber: 7.4 Consensus size: 14
14954540 ATCTAAATCC
* *
14954550 TAAACCATAAA-CT
1 TAAACCCTAAACCA
14954563 TAAACCCTAAAACCA
1 TAAACCCT-AAACCA
*
14954578 TAAACCCTTAACACA
1 TAAACCCTAAAC-CA
*
14954593 T-AACCTCTAAACCT
1 TAAACC-CTAAACCA
* * *
14954607 TAAACCC-CAGCCTT
1 TAAACCCTAAACC-A
* *
14954621 TAAATCATAAACCA
1 TAAACCCTAAACCA
*
14954635 TAAACCGTAAACCA
1 TAAACCCTAAACCA
14954649 TAAACC
1 TAAACC
14954655 ATAACCTCTA
Statistics
Matches: 71, Mismatches: 14, Indels: 13
0.72 0.14 0.13
Matches are distributed among these distances:
13 10 0.14
14 37 0.52
15 24 0.34
ACGTcount: A:0.47, C:0.31, G:0.02, T:0.20
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:14954631 original size:7 final size:7
Alignment explanation
Indices: 14954621--14954658 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
14954611 CCCCAGCCTT
*
14954621 TAAATCA
1 TAAACCA
14954628 TAAACCA
1 TAAACCA
*
14954635 TAAACCG
1 TAAACCA
14954642 TAAACCA
1 TAAACCA
14954649 TAAACCA
1 TAAACCA
14954656 TAA
1 TAA
14954659 CCTCTAAACC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.55, C:0.24, G:0.03, T:0.18
Consensus pattern (7 bp):
TAAACCA
Found at i:14954666 original size:21 final size:21
Alignment explanation
Indices: 14954591--14954673 Score: 78
Period size: 21 Copynumber: 3.9 Consensus size: 21
14954581 ACCCTTAACA
*
14954591 CATAACCTCTAAACCTTAAAC
1 CATAACCTCTAAACCATAAAC
** * * *
14954612 CCCAGCCTTTAAATCATAAAC
1 CATAACCTCTAAACCATAAAC
*
14954633 CATAAACC-GTAAACCATAAAC
1 CAT-AACCTCTAAACCATAAAC
14954654 CATAACCTCTAAACCCATAA
1 CATAACCTCTAAA-CCATAA
14954674 TCCACAAACC
Statistics
Matches: 47, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
20 4 0.09
21 34 0.72
22 9 0.19
ACGTcount: A:0.45, C:0.33, G:0.02, T:0.20
Consensus pattern (21 bp):
CATAACCTCTAAACCATAAAC
Found at i:14954673 original size:78 final size:78
Alignment explanation
Indices: 14954543--14954688 Score: 190
Period size: 78 Copynumber: 1.9 Consensus size: 78
14954533 CTAGTTAATC
* * * * *
14954543 TAAATCCTAAACCATAAACTTAAACCCTAAAACCATAAACCCTTAACACATAA-CCTCTAAACCT
1 TAAATCATAAACCATAAACGTAAACCATAAAACCATAAACCCTAAACACATAATCCAC-AAACCT
14954607 TAAACCCCAGCCTT
65 TAAACCCCAGCCTT
*
14954621 TAAATCATAAACCATAAACCGTAAACCAT-AAACCAT-AACCTCTAAACCCATAATCCACAAACC
1 TAAATCATAAACCATAAA-CGTAAACCATAAAACCATAAACC-CTAAACACATAATCCACAAACC
14954684 TTAAA
64 TTAAA
14954689 ATGGTAACAC
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
77 4 0.07
78 44 0.75
79 11 0.19
ACGTcount: A:0.47, C:0.32, G:0.01, T:0.21
Consensus pattern (78 bp):
TAAATCATAAACCATAAACGTAAACCATAAAACCATAAACCCTAAACACATAATCCACAAACCTT
AAACCCCAGCCTT
Found at i:14954976 original size:40 final size:40
Alignment explanation
Indices: 14954901--14954976 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
14954891 TTAAATCCCT
* *
14954901 GAGCATTAGCGGCGCTTTTTAAAAAACGTCACTAAAAATA
1 GAGCATTAGCGGCGCTTTATAAAAAACGCCACTAAAAATA
* * *
14954941 GAGCATTCGCGGCGCTTTATCAAAAACGCCGCTAAA
1 GAGCATTAGCGGCGCTTTATAAAAAACGCCACTAAA
14954977 GCCCTGAGCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (40 bp):
GAGCATTAGCGGCGCTTTATAAAAAACGCCACTAAAAATA
Found at i:14954986 original size:41 final size:41
Alignment explanation
Indices: 14954892--14955103 Score: 205
Period size: 41 Copynumber: 5.2 Consensus size: 41
14954882 TAAATTATTT
* *** * *
14954892 TAAATCCCTGAGCATTAGCGGCGCTTTTTAAAAAACGTCAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTACCAAAAACGCCGC
** * *
14954933 TAAA--AATAGAGCATTCGCGGCGCTTTATCAAAAACGCCGC
1 TAAAGCCCT-GAGCATTAGCGGCGCTTTACCAAAAACGCCGC
* ** * *
14954973 TAAAGCCCTGAGCATTAGCGGCACTTCCCCAAAAATGCTGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTACCAAAAACGCCGC
14955014 TAAAGCCCTGAGCATTAGCGGCGC-TTACCCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTA-CCAAAAACGCCGC
* * ** *
14955055 TAAAACCATGAGCATTAGCGGCGCTTCCCCAAAAACGCCGT
1 TAAAGCCCTGAGCATTAGCGGCGCTTTACCAAAAACGCCGC
14955096 TAAAGCCC
1 TAAAGCCC
14955104 CGAAAGCTCA
Statistics
Matches: 138, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
39 1 0.01
40 32 0.23
41 103 0.75
42 2 0.01
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (41 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTACCAAAAACGCCGC
Found at i:14955048 original size:82 final size:82
Alignment explanation
Indices: 14954941--14955103 Score: 238
Period size: 82 Copynumber: 2.0 Consensus size: 82
14954931 ACTAAAAATA
* * * *
14954941 GAGCATTCGCGGCGCTTTATCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCACTTCCCCAAA
1 GAGCATTAGCGGCGCTTTACCAAAAACGCCGCTAAAACCATGAGCATTAGCGGCACTTCCCCAAA
* *
14955006 AATGCTGCTAAAGCCCT
66 AACGCCGCTAAAGCCCT
*
14955023 GAGCATTAGCGGCGC-TTACCCAAAAACGCCGCTAAAACCATGAGCATTAGCGGCGCTTCCCCAA
1 GAGCATTAGCGGCGCTTTA-CCAAAAACGCCGCTAAAACCATGAGCATTAGCGGCACTTCCCCAA
*
14955087 AAACGCCGTTAAAGCCC
65 AAACGCCGCTAAAGCCC
14955104 CGAAAGCTCA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 3 0.04
82 69 0.96
ACGTcount: A:0.29, C:0.33, G:0.21, T:0.17
Consensus pattern (82 bp):
GAGCATTAGCGGCGCTTTACCAAAAACGCCGCTAAAACCATGAGCATTAGCGGCACTTCCCCAAA
AACGCCGCTAAAGCCCT
Found at i:14955207 original size:39 final size:40
Alignment explanation
Indices: 14955164--14955273 Score: 150
Period size: 40 Copynumber: 2.8 Consensus size: 40
14955154 CTGGAAAACT
* * *
14955164 CCACTAATGCTTG-TTTTTAGCGGCGTTTTTCATAAAGCG
1 CCACTAATGCTCGATCTTTAGCGGCGTTTTTCAAAAAGCG
* *
14955203 CCACTAATACTCGATCTTTAGCGGCGTTTTCCAAAAAGCG
1 CCACTAATGCTCGATCTTTAGCGGCGTTTTTCAAAAAGCG
* *
14955243 CCGCTAATGCTCGATCTTTAACGGCGTTTTT
1 CCACTAATGCTCGATCTTTAGCGGCGTTTTT
14955274 TATCCAAACG
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 11 0.18
40 50 0.82
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.35
Consensus pattern (40 bp):
CCACTAATGCTCGATCTTTAGCGGCGTTTTTCAAAAAGCG
Found at i:14956996 original size:28 final size:29
Alignment explanation
Indices: 14956941--14956999 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 29
14956931 CTAATATTAA
14956941 TAAGATTAAATTTTTAAAAAATAAATAAT
1 TAAGATTAAATTTTTAAAAAATAAATAAT
**
14956970 TAAGATT-AA-TTTTATCAAATAACATAAT
1 TAAGATTAAATTTTTAAAAAATAA-ATAAT
14956998 TA
1 TA
14957000 CATTCCATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 11 0.41
28 9 0.33
29 7 0.26
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.39
Consensus pattern (29 bp):
TAAGATTAAATTTTTAAAAAATAAATAAT
Found at i:14962276 original size:41 final size:41
Alignment explanation
Indices: 14962231--14962373 Score: 141
Period size: 41 Copynumber: 3.4 Consensus size: 41
14962221 TATTTTTTTA
*
14962231 TTTTTTAATTTTAAAATA-CTTTAAAATACTTTTTTAAAAT-T
1 TTTTTTAATTTTAAAATATCTTTAAAATA--TTTTTAAAATGC
*
14962272 TTTTTTAATTTTAAAATATTTTTAAAATATTTTTAAAATGC
1 TTTTTTAATTTTAAAATATCTTTAAAATATTTTTAAAATGC
*** **
14962313 TTTTTTAATTTT-TTTTAAT-TTTAAAATATTTTTAAAATAAAT
1 TTTTTTAATTTTAAAAT-ATCTTTAAAATATTTTTAAAAT--GC
14962355 TTTTTTAATTTTCAAAATA
1 TTTTTTAATTTT-AAAATA
14962374 ATTTTTTGGT
Statistics
Matches: 85, Mismatches: 10, Indels: 12
0.79 0.09 0.11
Matches are distributed among these distances:
40 30 0.35
41 32 0.38
42 21 0.25
43 1 0.01
44 1 0.01
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (41 bp):
TTTTTTAATTTTAAAATATCTTTAAAATATTTTTAAAATGC
Found at i:14962328 original size:51 final size:51
Alignment explanation
Indices: 14962239--14962351 Score: 183
Period size: 51 Copynumber: 2.2 Consensus size: 51
14962229 TATTTTTTAA
14962239 TTTTAAAATACTTTAAAATACTTTTTTAAAATTTTTTTTAATTTTAAAATAT
1 TTTTAAAATACTTTAAAATACTTTTTT-AAATTTTTTTTAATTTTAAAATAT
* *
14962291 TTTTAAAATATTTTTAAAATGCTTTTTT-AATTTTTTTTAATTTTAAAATAT
1 TTTTAAAATA-CTTTAAAATACTTTTTTAAATTTTTTTTAATTTTAAAATAT
14962342 TTTTAAAATA
1 TTTTAAAATA
14962352 AATTTTTTTA
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
51 33 0.57
52 10 0.17
53 15 0.26
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.58
Consensus pattern (51 bp):
TTTTAAAATACTTTAAAATACTTTTTTAAATTTTTTTTAATTTTAAAATAT
Found at i:14962358 original size:13 final size:11
Alignment explanation
Indices: 14962239--14962351 Score: 66
Period size: 11 Copynumber: 10.9 Consensus size: 11
14962229 TATTTTTTAA
14962239 TTTTAAAATA-
1 TTTTAAAATAT
*
14962249 CTTTAAAATACTT
1 TTTTAAAATA--T
14962262 TTTTAAAAT-T
1 TTTTAAAATAT
* *
14962272 TTTT---TTAA
1 TTTTAAAATAT
14962280 TTTTAAAATAT
1 TTTTAAAATAT
14962291 TTTTAAAATAT
1 TTTTAAAATAT
*
14962302 TTTTAAAATGCT
1 TTTTAAAAT-AT
*
14962314 TTTT-TAAT-T
1 TTTTAAAATAT
* *
14962323 TTTT---TTAA
1 TTTTAAAATAT
14962331 TTTTAAAATAT
1 TTTTAAAATAT
14962342 TTTTAAAATA
1 TTTTAAAATA
14962352 AATTTTTTTA
Statistics
Matches: 79, Mismatches: 12, Indels: 23
0.69 0.11 0.20
Matches are distributed among these distances:
7 2 0.03
8 8 0.10
9 5 0.06
10 14 0.18
11 37 0.47
12 5 0.06
13 8 0.10
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.58
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:14962376 original size:21 final size:22
Alignment explanation
Indices: 14962340--14962380 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14962330 ATTTTAAAAT
*
14962340 ATTTTTAAAATAAATTTTTTTA
1 ATTTTCAAAATAAATTTTTTTA
14962362 ATTTTCAAAAT-AATTTTTT
1 ATTTTCAAAATAAATTTTTT
14962381 GGTATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
ATTTTCAAAATAAATTTTTTTA
Found at i:14962379 original size:51 final size:50
Alignment explanation
Indices: 14962273--14962379 Score: 117
Period size: 51 Copynumber: 2.1 Consensus size: 50
14962263 TTTAAAATTT
*** **
14962273 TTTTTAATTTTAAAATATTTTTAAAATATTTTTAAAATGCTTTTTTAATTT
1 TTTTTAATTTTAAAATATTTTTAAAATATTTTTAAAAT-CTTTCAAAATAA
**
14962324 TTTTTAATTTTAAAATATTTTTAAAATAAATTTTTTTAAT-TTTCAAAATAA
1 TTTTTAATTTTAAAATATTTTTAAAAT--ATTTTTAAAATCTTTCAAAATAA
14962375 TTTTT
1 TTTTT
14962380 TGGTATTTAT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
51 38 0.81
53 9 0.19
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (50 bp):
TTTTTAATTTTAAAATATTTTTAAAATATTTTTAAAATCTTTCAAAATAA
Found at i:14962816 original size:18 final size:18
Alignment explanation
Indices: 14962795--14962839 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
14962785 CAAAATATAT
*
14962795 AAAAAAATA-AAAAAAAG
1 AAAAAAAAACAAAAAAAG
*
14962812 AAAAAAAAACAGAAAAAG
1 AAAAAAAAACAAAAAAAG
14962830 AAAAAAAAAC
1 AAAAAAAAAC
14962840 CTGGACTGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.87, C:0.04, G:0.07, T:0.02
Consensus pattern (18 bp):
AAAAAAAAACAAAAAAAG
Found at i:14962988 original size:18 final size:17
Alignment explanation
Indices: 14962965--14963042 Score: 72
Period size: 18 Copynumber: 4.5 Consensus size: 17
14962955 GAAGGAGAGG
14962965 GGAAG-AAGAAGAAAGAAA
1 GGAAGAAAGAA-AAAG-AA
14962983 GGAAGAAAGAAAAAGAA
1 GGAAGAAAGAAAAAGAA
* *
14963000 GG-A-AAAGGAAAGGAGA
1 GGAAGAAAGAAAAAGA-A
14963016 GGAAAGAAAGAAAAAGAA
1 GG-AAGAAAGAAAAAGAA
14963034 GGAAAGAAA
1 GG-AAGAAA
14963043 AGGAAAGGGG
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
15 9 0.18
16 4 0.08
17 4 0.08
18 20 0.39
19 14 0.27
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (17 bp):
GGAAGAAAGAAAAAGAA
Found at i:14962998 original size:10 final size:10
Alignment explanation
Indices: 14962967--14963038 Score: 54
Period size: 10 Copynumber: 6.6 Consensus size: 10
14962957 AGGAGAGGGG
*
14962967 AAGAAGAAGA
1 AAGAAAAAGA
14962977 AAGAAAGGAAGA
1 AAGAAA--AAGA
14962989 AAGAAAAAGA
1 AAGAAAAAGA
* *
14962999 AGGAAAAGGA
1 AAGAAAAAGA
14963009 AAGGAGAGGAAAGA
1 AA-GA-A--AAAGA
14963023 AAGAAAAAGA
1 AAGAAAAAGA
*
14963033 AGGAAA
1 AAGAAA
14963039 GAAAAGGAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
10 28 0.56
11 2 0.04
12 12 0.24
13 2 0.04
14 6 0.12
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (10 bp):
AAGAAAAAGA
Found at i:14962998 original size:22 final size:23
Alignment explanation
Indices: 14962967--14963049 Score: 71
Period size: 24 Copynumber: 3.6 Consensus size: 23
14962957 AGGAGAGGGG
*
14962967 AAGAAGAAGAAAG-AAAGGAAGA
1 AAGAAAAAGAAAGAAAAGGAAGA
*
14962989 AAGAAAAAGAAGGAAAAGGAA-A
1 AAGAAAAAGAAAGAAAAGGAAGA
* * *
14963011 GGAGAGGAAAGAAAGAAAAAGAAGGA
1 -AAGA-AAAAGAAAGAAAAGGAA-GA
*
14963037 AAGAAAAGGAAAG
1 AAGAAAAAGAAAG
14963050 GGGAGGGGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
22 12 0.26
23 10 0.21
24 21 0.45
25 3 0.06
26 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (23 bp):
AAGAAAAAGAAAGAAAAGGAAGA
Found at i:14963004 original size:14 final size:13
Alignment explanation
Indices: 14962970--14963043 Score: 51
Period size: 14 Copynumber: 5.1 Consensus size: 13
14962960 AGAGGGGAAG
14962970 AAGAAGAAAG-AA
1 AAGAAGAAAGAAA
*
14962982 AGGAAGAAAGAAA
1 AAGAAGAAAGAAA
14962995 AAGAAGGAAAAGGAAA
1 AAGAA-G-AAA-GAAA
14963011 GGAGAGGAAAGAAAGAAA
1 --A-A-G-AAGAAAGAAA
14963029 AAGAAGGAAAGAAA
1 AAGAA-GAAAGAAA
14963043 A
1 A
14963044 GGAAAGGGGA
Statistics
Matches: 50, Mismatches: 2, Indels: 18
0.71 0.03 0.26
Matches are distributed among these distances:
12 9 0.18
13 8 0.16
14 11 0.22
15 4 0.08
16 5 0.10
18 5 0.10
19 4 0.08
20 2 0.04
21 2 0.04
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (13 bp):
AAGAAGAAAGAAA
Found at i:14963025 original size:28 final size:28
Alignment explanation
Indices: 14962970--14963049 Score: 85
Period size: 34 Copynumber: 2.8 Consensus size: 28
14962960 AGAGGGGAAG
14962970 AAGAA-GAAAG-AAAGG-AAGAAAGAAA
1 AAGAAGGAAAGAAAAGGAAAGAAAGAAA
14962995 AAGAAGGAAAAGGAAAGGAGAGGAAAGAAAGAAA
1 AAGAAGG-AAA-G-AA--A-AGGAAAGAAAGAAA
14963029 AAGAAGGAAAGAAAAGGAAAG
1 AAGAAGGAAAGAAAAGGAAAG
14963050 GGGAGGGGAG
Statistics
Matches: 46, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
25 5 0.11
26 1 0.02
27 3 0.07
28 8 0.17
29 1 0.02
30 1 0.02
31 2 0.04
32 2 0.04
33 6 0.13
34 17 0.37
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (28 bp):
AAGAAGGAAAGAAAAGGAAAGAAAGAAA
Found at i:14963045 original size:10 final size:10
Alignment explanation
Indices: 14962987--14963049 Score: 60
Period size: 10 Copynumber: 6.5 Consensus size: 10
14962977 AAGAAAGGAA
*
14962987 GAAAGAAAAA
1 GAAAGAAAAG
*
14962997 GAAGGAAAAG
1 GAAAGAAAAG
* *
14963007 GAAAGGAGAG
1 GAAAGAAAAG
14963017 GAAAG-AAA-
1 GAAAGAAAAG
14963025 GAAA-AAGAAG
1 GAAAGAA-AAG
14963035 GAAAGAAAAG
1 GAAAGAAAAG
14963045 GAAAG
1 GAAAG
14963050 GGGAGGGGAG
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
8 5 0.12
9 4 0.09
10 32 0.74
11 2 0.05
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (10 bp):
GAAAGAAAAG
Found at i:14963049 original size:18 final size:19
Alignment explanation
Indices: 14963001--14963049 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
14962991 GAAAAAGAAG
14963001 GAAAAGGAAAGGAGAGGAAA
1 GAAAAGGAAA-GAGAGGAAA
*
14963021 G-AAA-GAAAAAGAAGGAAA
1 GAAAAGGAAAGAG-AGGAAA
14963039 GAAAAGGAAAG
1 GAAAAGGAAAG
14963050 GGGAGGGGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
17 2 0.08
18 11 0.46
19 6 0.25
20 5 0.21
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (19 bp):
GAAAAGGAAAGAGAGGAAA
Found at i:14963110 original size:18 final size:17
Alignment explanation
Indices: 14963060--14963112 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 17
14963050 GGGAGGGGAG
14963060 GAAAGAAAGAAAAATAAG-
1 GAAAGAAA-AAAAA-AAGA
**
14963078 GAAAGAAAAGGAAAAGA
1 GAAAGAAAAAAAAAAGA
14963095 GAAGAGAAAAAAAAAAGA
1 GAA-AGAAAAAAAAAAGA
14963113 ACGAAGAAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 3 0.10
17 6 0.21
18 20 0.69
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.02
Consensus pattern (17 bp):
GAAAGAAAAAAAAAAGA
Found at i:14963112 original size:43 final size:43
Alignment explanation
Indices: 14963022--14963113 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
14963012 GAGAGGAAAG
* * * * ** *
14963022 AAAGAAAAAGAAGGAAAGAAAAGGAAAGGGGAGGGGAGGAAAG
1 AAAGAAAAAGAAGGAAAGAAAAGGAAAAGAGAAGAGAAAAAAA
*
14963065 AAAGAAAAATAAGGAAAGAAAAGGAAAAGAGAAGAGAAAAAAA
1 AAAGAAAAAGAAGGAAAGAAAAGGAAAAGAGAAGAGAAAAAAA
14963108 AAAGAA
1 AAAGAA
14963114 CGAAGAAGAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.01
Consensus pattern (43 bp):
AAAGAAAAAGAAGGAAAGAAAAGGAAAAGAGAAGAGAAAAAAA
Found at i:14963871 original size:19 final size:19
Alignment explanation
Indices: 14963823--14963874 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
14963813 AAAATATATA
**
14963823 TAATATTTTGGTATTTTTT
1 TAATATTTTATTATTTTTT
14963842 TAATATTTTATTATTTTTT
1 TAATATTTTATTATTTTTT
*
14963861 TAATGTTTTATTAT
1 TAATATTTTATTAT
14963875 GGGTTTTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (19 bp):
TAATATTTTATTATTTTTT
Found at i:14963962 original size:28 final size:27
Alignment explanation
Indices: 14963914--14963980 Score: 109
Period size: 28 Copynumber: 2.5 Consensus size: 27
14963904 AACCAAAATA
14963914 ACCAAAATAT-TATAACTTTTTTATTT
1 ACCAAAATATATATAACTTTTTTATTT
*
14963940 ACCAAAATATATATAATTTTTTTTATTT
1 ACCAAAATATATATAA-CTTTTTTATTT
14963968 ACCAAAATATATA
1 ACCAAAATATATA
14963981 AAAAAAGTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
26 10 0.26
27 5 0.13
28 23 0.61
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.46
Consensus pattern (27 bp):
ACCAAAATATATATAACTTTTTTATTT
Found at i:14964013 original size:17 final size:16
Alignment explanation
Indices: 14963980--14964010 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14963970 CAAAATATAT
*
14963980 AAAAAAAGTAAAAAAC
1 AAAAAAAATAAAAAAC
14963996 AAAAAAAATAAAAAA
1 AAAAAAAATAAAAAA
14964011 ACAGAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.87, C:0.03, G:0.03, T:0.06
Consensus pattern (16 bp):
AAAAAAAATAAAAAAC
Found at i:14968088 original size:206 final size:206
Alignment explanation
Indices: 14967734--14968146 Score: 826
Period size: 206 Copynumber: 2.0 Consensus size: 206
14967724 TTTGTGAGGA
14967734 AGAATTCCCAAGACTCCATGTTCTCTTTATCTACGATAGCAAATGCTATCGGGAGCACGTTTTTG
1 AGAATTCCCAAGACTCCATGTTCTCTTTATCTACGATAGCAAATGCTATCGGGAGCACGTTTTTG
14967799 TTGCCGTCTTGAGCAACCGCAATAAGTAGGATCTGTGTATATTTTCCATACAGCCAGGTCTCATT
66 TTGCCGTCTTGAGCAACCGCAATAAGTAGGATCTGTGTATATTTTCCATACAGCCAGGTCTCATT
14967864 TACCTGCACAAGTAGCTTGCAGTGGGCAAATGCCCGCACACATGGATCGAACGTCCAGAACATCT
131 TACCTGCACAAGTAGCTTGCAGTGGGCAAATGCCCGCACACATGGATCGAACGTCCAGAACATCT
14967929 TATGGAAAATC
196 TATGGAAAATC
14967940 AGAATTCCCAAGACTCCATGTTCTCTTTATCTACGATAGCAAATGCTATCGGGAGCACGTTTTTG
1 AGAATTCCCAAGACTCCATGTTCTCTTTATCTACGATAGCAAATGCTATCGGGAGCACGTTTTTG
14968005 TTGCCGTCTTGAGCAACCGCAATAAGTAGGATCTGTGTATATTTTCCATACAGCCAGGTCTCATT
66 TTGCCGTCTTGAGCAACCGCAATAAGTAGGATCTGTGTATATTTTCCATACAGCCAGGTCTCATT
14968070 TACCTGCACAAGTAGCTTGCAGTGGGCAAATGCCCGCACACATGGATCGAACGTCCAGAACATCT
131 TACCTGCACAAGTAGCTTGCAGTGGGCAAATGCCCGCACACATGGATCGAACGTCCAGAACATCT
14968135 TATGGAAAATC
196 TATGGAAAATC
14968146 A
1 A
14968147 TTTTTACTGA
Statistics
Matches: 207, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
206 207 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (206 bp):
AGAATTCCCAAGACTCCATGTTCTCTTTATCTACGATAGCAAATGCTATCGGGAGCACGTTTTTG
TTGCCGTCTTGAGCAACCGCAATAAGTAGGATCTGTGTATATTTTCCATACAGCCAGGTCTCATT
TACCTGCACAAGTAGCTTGCAGTGGGCAAATGCCCGCACACATGGATCGAACGTCCAGAACATCT
TATGGAAAATC
Found at i:14970092 original size:27 final size:27
Alignment explanation
Indices: 14970016--14970082 Score: 125
Period size: 27 Copynumber: 2.5 Consensus size: 27
14970006 TTGGCAGGAC
*
14970016 TGGTGCCGCCAACAGGGATCCCTTGTT
1 TGGTGCCGCCAACAGGGTTCCCTTGTT
14970043 TGGTGCCGCCAACAGGGTTCCCTTGTT
1 TGGTGCCGCCAACAGGGTTCCCTTGTT
14970070 TGGTGCCGCCAAC
1 TGGTGCCGCCAAC
14970083 CTGCTTCCCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.13, C:0.31, G:0.30, T:0.25
Consensus pattern (27 bp):
TGGTGCCGCCAACAGGGTTCCCTTGTT
Found at i:14975223 original size:26 final size:26
Alignment explanation
Indices: 14975174--14975225 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14975164 TTTAAAAATA
*
14975174 TTTAAAATTATTAAAATATTATATTT
1 TTTAAAATTATTAAAATATCATATTT
*
14975200 TTTAATATTATTAAACATA-CATATTT
1 TTTAAAATTATTAAA-ATATCATATTT
14975226 AATTATTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (26 bp):
TTTAAAATTATTAAAATATCATATTT
Found at i:14980551 original size:22 final size:22
Alignment explanation
Indices: 14980517--14980558 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
14980507 CTTCGTTGCT
*
14980517 TCTAGTATCGACATTCTCTATC
1 TCTAGCATCGACATTCTCTATC
*
14980539 TCTAGCATTGACATTCTCTA
1 TCTAGCATCGACATTCTCTA
14980559 CGAATTCCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.26, G:0.10, T:0.40
Consensus pattern (22 bp):
TCTAGCATCGACATTCTCTATC
Found at i:14981390 original size:21 final size:21
Alignment explanation
Indices: 14981364--14981419 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
14981354 AATAGCGGTG
*
14981364 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
* *
14981385 GCGGTGAGATTGGATATTGTA
1 GCGGTGAGATTAGATACTGTA
14981406 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
14981420 AACAATGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.25, C:0.07, G:0.38, T:0.30
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:14981850 original size:17 final size:17
Alignment explanation
Indices: 14981830--14981874 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
14981820 TATTACTAGA
14981830 AATTTTTAATTATAAAT
1 AATTTTTAATTATAAAT
** *
14981847 AATTTAAAATAATAAAT
1 AATTTTTAATTATAAAT
14981864 AATTTTTAATT
1 AATTTTTAATT
14981875 TTTAATTATA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTTTTAATTATAAAT
Found at i:14987278 original size:60 final size:60
Alignment explanation
Indices: 14987152--14987267 Score: 142
Period size: 60 Copynumber: 1.9 Consensus size: 60
14987142 ATTTTTTTGA
** * ** * * *
14987152 AATTTTTAGAATTAGAGTTAAATTGACAAATTTTGTAAATGTTGAGGGTTAATTTTATTG
1 AATTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAACATTAAGGGCTAAATTTATTG
* *
14987212 ATTTTTTAGAATTTGAACTAAAATGACAAATTTTGTAAACATTAAGGGCTAAATTT
1 AATTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAACATTAAGGGCTAAATTT
14987268 GTTACATTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
60 46 1.00
ACGTcount: A:0.38, C:0.04, G:0.16, T:0.42
Consensus pattern (60 bp):
AATTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAACATTAAGGGCTAAATTTATTG
Found at i:14989462 original size:7 final size:8
Alignment explanation
Indices: 14989436--14989461 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
14989426 TATTCTAATC
14989436 AAATAAAA
1 AAATAAAA
14989444 AAATAAAA
1 AAATAAAA
14989452 AAATAAAA
1 AAATAAAA
14989460 AA
1 AA
14989462 TTTTAATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAATAAAA
Found at i:14989705 original size:12 final size:12
Alignment explanation
Indices: 14989688--14989732 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
14989678 TTTATATTTT
14989688 TATTTTAATAAA
1 TATTTTAATAAA
*
14989700 TATTTTTATAGAA
1 TATTTTAATA-AA
*
14989713 TATTTTAATAAT
1 TATTTTAATAAA
14989725 TATTTTAA
1 TATTTTAA
14989733 AGTAAGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 18 0.62
13 11 0.38
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (12 bp):
TATTTTAATAAA
Found at i:14989706 original size:13 final size:13
Alignment explanation
Indices: 14989690--14989730 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
14989680 TATATTTTTA
14989690 TTTTAATAAATAT
1 TTTTAATAAATAT
14989703 TTTT-ATAGAATA-
1 TTTTAATA-AATAT
*
14989715 TTTTAATAATTAT
1 TTTTAATAAATAT
14989728 TTT
1 TTT
14989731 AAAGTAAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (13 bp):
TTTTAATAAATAT
Found at i:14990760 original size:16 final size:17
Alignment explanation
Indices: 14990739--14990770 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
14990729 GCAACTAAAA
14990739 CTATCATT-CAACAACC
1 CTATCATTCCAACAACC
14990755 CTATCATTCCAACAAC
1 CTATCATTCCAACAAC
14990771 TTCCTACGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (17 bp):
CTATCATTCCAACAACC
Found at i:14991354 original size:100 final size:101
Alignment explanation
Indices: 14991181--14991388 Score: 391
Period size: 100 Copynumber: 2.1 Consensus size: 101
14991171 GCAATAAAAC
14991181 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
14991246 TTTAAAATCCCAAACTCGGAATATTTCCTTTATTA-
66 TTTAAAATCCCAAACTCGGAATATTTCCTTTATTAT
**
14991281 TTTAAAAGAATGTCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
14991346 TTTAAAATCCCAAACTCGGAATATTTCCTTTATTAT
66 TTTAAAATCCCAAACTCGGAATATTTCCTTTATTAT
14991382 TTTAAAA
1 TTTAAAA
14991389 AATCTTCATT
Statistics
Matches: 105, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
100 98 0.93
101 7 0.07
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (101 bp):
TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
TTTAAAATCCCAAACTCGGAATATTTCCTTTATTAT
Found at i:14993907 original size:44 final size:44
Alignment explanation
Indices: 14993836--14994389 Score: 311
Period size: 44 Copynumber: 12.7 Consensus size: 44
14993826 ACTAGTCGCG
* **
14993836 ATCTGCT-CTCTGCAACTTCAGAAAGATAAGATCTGAGATTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGATTTTA
* * * * **
14993879 ATCCGCTCTACTACAACTTCAGGGAGAT-AGAAT-TGTCGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAG-ATCTG-AGATTTTA
* * **
14993923 ATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTTGCCATCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGAT-TTTA
* * ***
14993968 GTCTGC-CTCACTGCAACTTCAGGGAAATAAGA-CT-AGA-TGCG
1 ATCTGCTC-CACTGCAACTTCAGGGAGATAAGATCTGAGATTTTA
* * * * *
14994009 GTCTGCT-CTCTACAACTTCAGAGAGATAAGATCTGAGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGATTTTA
* **
14994052 ATCTGCTCCACTGCAACTTCAGGGAGAT-AGAAT-TGTCGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAG-ATCTG-AGATTTTA
* * * * **
14994096 ATCTGCTCCGCTACAACTTCAGGAAGATAAGATTTGCCATTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGA-TTTTA
* * * *
14994141 GTCTGCCCCACTGCAACTTCA-GGAGGATAAGACCT-A-CTTACTTA
1 ATCTGCTCCACTGCAACTTCAGGGA-GATAAGATCTGAGATT--TTA
* * * ***
14994185 GTCTGCTCCACTACAACTTTAGGGAGATAAGA-CT-AGA-TGCG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGATTTTA
* * * *
14994226 ATCTGCT-CTCTACAACTTCAGAGAGATAAGATCTGAGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGATTTTA
** * * * **
14994269 ATCCACTCCACTGCAACTTTAGGGAAATAAGAT-TGTCGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTG-AGATTTTA
* * * **
14994313 ATCTGCTCCGCTGCAACTTCAAGGAGATAAGATTTGCCATCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGAT-TTTA
*
14994358 GTCTG-TCTCACTGCAACTTCA-GGAGGATAAGA
1 ATCTGCTC-CACTGCAACTTCAGGGA-GATAAGA
14994390 CTCGATCTGT
Statistics
Matches: 391, Mismatches: 89, Indels: 60
0.72 0.16 0.11
Matches are distributed among these distances:
40 41 0.10
41 17 0.04
42 6 0.02
43 34 0.09
44 193 0.49
45 100 0.26
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGAGATTTTA
Found at i:14993989 original size:173 final size:173
Alignment explanation
Indices: 14993808--14994173 Score: 592
Period size: 173 Copynumber: 2.1 Consensus size: 173
14993798 TACTCCATTA
*
14993808 CAACTTCAGGGAGATAAGACTAG-TCGCGATCTGCTCTCTGCAACTTCAGAAAGATAAGATCTGA
1 CAACTTCAGGGAGATAAGACTAGAT-GCGATCTGCTCTCTACAACTTCAGAAAGATAAGATCTGA
* *
14993872 GATTTTAATCCGCTCTACTACAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCGCTGC
65 GATTTTAATCCGCTCCACTACAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCGCTAC
* *
14993937 AACTTCAGGGAGATAAGATTTGCCATCTTTAGTCTGCCTCACTG
130 AACTTCAGGAAGATAAGATTTGCCATCTTTAGTCTGCCCCACTG
* * *
14993981 CAACTTCAGGGAAATAAGACTAGATGCGGTCTGCTCTCTACAACTTCAGAGAGATAAGATCTGAG
1 CAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAAAGATAAGATCTGAG
* * *
14994046 GTTTTAATCTGCTCCACTGCAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCGCTACA
66 ATTTTAATCCGCTCCACTACAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCGCTACA
*
14994111 ACTTCAGGAAGATAAGATTTGCCATTTTTAGTCTGCCCCACTG
131 ACTTCAGGAAGATAAGATTTGCCATCTTTAGTCTGCCCCACTG
14994154 CAACTTCA-GGAGGATAAGAC
1 CAACTTCAGGGA-GATAAGAC
14994174 CTACTTACTT
Statistics
Matches: 178, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
172 3 0.02
173 174 0.98
174 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (173 bp):
CAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAAAGATAAGATCTGAG
ATTTTAATCCGCTCCACTACAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCGCTACA
ACTTCAGGAAGATAAGATTTGCCATCTTTAGTCTGCCCCACTG
Found at i:14994069 original size:217 final size:217
Alignment explanation
Indices: 14993836--14994390 Score: 599
Period size: 217 Copynumber: 2.6 Consensus size: 217
14993826 ACTAGTCGCG
* * *
14993836 ATCTGCT-CTCTGCAACTTCAGAAAGATA-AGATCTG-AGATTTTAATCCGCTCTACTACAACTT
1 ATCTGCTCCACTGCAACTTCAGAAAGATAGA-AT-TGTAGACTTTAATCCGCTCCACTACAACTT
* * * * * ** *
14993898 CAGGGAGAT-AGAATTGTCGGCTTTAATCTGCTCCGCTGCAACTTCAGG-GAGATAAGATTTGCC
64 CAGGAAGATAAGAATTGCCAGCTTTAATCTGCCCCACTGCAACTTCAGGAG-GATAAGACCT-AC
* *
14993961 AT-CTTTAGTCTGC-CTCACTGCAACTTCAGGGAAATAAGACTAGATGCGGTCTGCTCTCTACAA
127 ATAC-TTAGTCTGCTC-CACTACAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCTCTACAA
14994024 CTTCAGAGAGATAAGATCTGAGGTTTTA
190 CTTCAGAGAGATAAGATCTGAGGTTTTA
** * * * *
14994052 ATCTGCTCCACTGCAACTTCAGGGAGATAGAATTGTCGGCTTTAATCTGCTCCGCTACAACTTCA
1 ATCTGCTCCACTGCAACTTCAGAAAGATAGAATTGTAGACTTTAATCCGCTCCACTACAACTTCA
* ** * *
14994117 GGAAGATAAGATTTGCCATTTTTAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACCTACTTAC
66 GGAAGATAAGAATTGCCAGCTTTAATCTGCCCCACTGCAACTTCAGGAGGATAAGACCTACATAC
* *
14994182 TTAGTCTGCTCCACTACAACTTTAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAG
131 TTAGTCTGCTCCACTACAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCTCTACAACTTCAG
14994247 AGAGATAAGATCTGAGGTTTTA
196 AGAGATAAGATCTGAGGTTTTA
** * * * * * * *
14994269 ATCCACTCCACTGCAACTTTAGGGAA-ATA-AGATTGTCGGCTTTAATCTGCTCCGCTGCAACTT
1 ATCTGCTCCACTGCAACTTCA-GAAAGATAGA-ATTGTAGACTTTAATCCGCTCCACTACAACTT
* * * * *
14994332 CAAGG-AGATAAGATTTGCCATCTTTAGTCTGTCTCACTGCAACTTCAGGAGGATAAGAC
64 C-AGGAAGATAAGAATTGCCAGCTTTAATCTGCCCCACTGCAACTTCAGGAGGATAAGAC
14994391 TCGATCTGTC
Statistics
Matches: 295, Mismatches: 34, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
216 10 0.03
217 236 0.80
218 48 0.16
219 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (217 bp):
ATCTGCTCCACTGCAACTTCAGAAAGATAGAATTGTAGACTTTAATCCGCTCCACTACAACTTCA
GGAAGATAAGAATTGCCAGCTTTAATCTGCCCCACTGCAACTTCAGGAGGATAAGACCTACATAC
TTAGTCTGCTCCACTACAACTTCAGGGAAATAAGACTAGATGCGATCTGCTCTCTACAACTTCAG
AGAGATAAGATCTGAGGTTTTA
Found at i:14994271 original size:173 final size:172
Alignment explanation
Indices: 14993837--14994344 Score: 503
Period size: 173 Copynumber: 2.9 Consensus size: 172
14993827 CTAGTCGCGA
* * * ** *
14993837 TCTGCTCTCTGCAACTTCAGAAAGATAAGATCTGA-GATTTTAATCCGCTCTACTACAACTTCAG
1 TCTGCTCACTACAACTTCAGAGAGATAAGATCTGAGGA-TGCAATCTGCTCT-CTACAACTTCAG
*
14993901 GGAGATAGAATTGTCGGCTTTAATCTGCTCCGCTGCAACTTCAGGGAGATAAGATTTGCCATCTT
64 GGAGATAGAATTGTCGGCTTTAATCTGCTCCGCTGCAACTTCAGGAAGATAAGATTTGCCATCTT
* * * *
14993966 TAGTCTGCCTCACTGCAACTTCAGGGAAATAAGACTAGATGCGG
129 TAGTCTGCCCCACTGCAACTTCAGGGAAATAAGACTACATACAG
* * ** * *
14994010 TCTGCTCTCTACAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCACTGCAACTTCAGG
1 TCTGCTCACTACAACTTCAGAGAGATAAGATCTGAGGATGCAATCTGCT-CTCTACAACTTCAGG
* *
14994075 GAGATAGAATTGTCGGCTTTAATCTGCTCCGCTACAACTTCAGGAAGATAAGATTTGCCATTTTT
65 GAGATAGAATTGTCGGCTTTAATCTGCTCCGCTGCAACTTCAGGAAGATAAGATTTGCCATCTTT
* *
14994140 AGTCTGCCCCACTGCAACTTCA-GGAGGATAAGACCTACTTACTTAG
130 AGTCTGCCCCACTGCAACTTCAGGGA-AATAAGA-CTACATAC--AG
* * * *
14994186 TCTGCTCCACTACAACTTTAGGGAGATAAGA-CT-A-GATGCGATCTGCTCTCTACAACTTCAGA
1 TCTGCT-CACTACAACTTCAGAGAGATAAGATCTGAGGATGCAATCTGCTCTCTACAACTTCAGG
* * ** * * * **
14994248 GAGATA-AGATCTG-AGGTTTTAATCCACTCCACTGCAACTTTAGGGAA-ATAAGA-TTGTCGGC
65 GAGATAGA-AT-TGTCGGCTTTAATCTGCTCCGCTGCAACTTCA-GGAAGATAAGATTTGCCATC
* * * * *
14994309 TTTAATCTGCTCCGCTGCAACTTCAAGGAGATAAGA
127 TTTAGTCTGCCCCACTGCAACTTCAGGGAAATAAGA
14994345 TTTGCCATCT
Statistics
Matches: 285, Mismatches: 39, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
172 37 0.13
173 195 0.68
174 22 0.08
175 1 0.00
176 9 0.03
177 21 0.07
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (172 bp):
TCTGCTCACTACAACTTCAGAGAGATAAGATCTGAGGATGCAATCTGCTCTCTACAACTTCAGGG
AGATAGAATTGTCGGCTTTAATCTGCTCCGCTGCAACTTCAGGAAGATAAGATTTGCCATCTTTA
GTCTGCCCCACTGCAACTTCAGGGAAATAAGACTACATACAG
Found at i:15006048 original size:100 final size:101
Alignment explanation
Indices: 15005875--15006082 Score: 409
Period size: 100 Copynumber: 2.1 Consensus size: 101
15005865 GCAATAAAAC
15005875 TTTAAAAGAATGTCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAATGTCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
15005940 TTTAAAATCCCAAACTCGGAATATTTCCTTTATTA-
66 TTTAAAATCCCAAACTCGGAATATTTCCTTTATTAT
15005975 TTTAAAAGAATGTCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAATGTCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
15006040 TTTAAAATCCCAAACTCGGAATATTTCCTTTATTAT
66 TTTAAAATCCCAAACTCGGAATATTTCCTTTATTAT
15006076 TTTAAAA
1 TTTAAAA
15006083 AATCTTCATT
Statistics
Matches: 107, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
100 100 0.93
101 7 0.07
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (101 bp):
TTTAAAAGAATGTCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
TTTAAAATCCCAAACTCGGAATATTTCCTTTATTAT
Found at i:15006503 original size:22 final size:21
Alignment explanation
Indices: 15006478--15006519 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
15006468 GACAAACAAA
15006478 TAAATAAGGATCAAAAGATGC
1 TAAATAAGGATCAAAAGATGC
15006499 NTAAATAAGGATCAAAAGATG
1 -TAAATAAGGATCAAAAGATG
15006520 TACACATGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.19
Consensus pattern (21 bp):
TAAATAAGGATCAAAAGATGC
Found at i:15007638 original size:15 final size:15
Alignment explanation
Indices: 15007620--15007649 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15007610 ACACATAATG
15007620 ATAAAAAAACATAAA
1 ATAAAAAAACATAAA
*
15007635 ATAAAAAAATATAAA
1 ATAAAAAAACATAAA
15007650 TATCAACCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (15 bp):
ATAAAAAAACATAAA
Found at i:15010109 original size:82 final size:82
Alignment explanation
Indices: 15010018--15010182 Score: 303
Period size: 82 Copynumber: 2.0 Consensus size: 82
15010008 CATTTGTTTC
* *
15010018 GAAATTTAGATGTTTTTCATAGAATGAAGTTTATACTTTCATTTGATATTGCTATCTTGATCATA
1 GAAATTTAGATGTTTTTCATAGAATGAAATCTATACTTTCATTTGATATTGCTATCTTGATCATA
15010083 TGAGTCCTTTGTTAAAA
66 TGAGTCCTTTGTTAAAA
*
15010100 GAAATTTAGATGTTTTTCATAGTATGAAATCTATACTTTCATTTGATATTGCTATCTTGATCATA
1 GAAATTTAGATGTTTTTCATAGAATGAAATCTATACTTTCATTTGATATTGCTATCTTGATCATA
15010165 TGAGTCCTTTGTTAAAA
66 TGAGTCCTTTGTTAAAA
15010182 G
1 G
15010183 GTATGAGACT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (82 bp):
GAAATTTAGATGTTTTTCATAGAATGAAATCTATACTTTCATTTGATATTGCTATCTTGATCATA
TGAGTCCTTTGTTAAAA
Found at i:15011112 original size:37 final size:38
Alignment explanation
Indices: 15011071--15011145 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 38
15011061 ATTTTTAACT
*
15011071 CATTGCCATG-GAGGTGAATTGTGGTTTTT-CTTCAACC
1 CATTGCCATGAG-GGTGAATTGTGATTTTTGCTTCAACC
* * *
15011108 CATTGTCATTAGGGTGAATTGTGATTTTTGTTTCAACC
1 CATTGCCATGAGGGTGAATTGTGATTTTTGCTTCAACC
15011146 AACTACCACT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
37 24 0.75
38 8 0.25
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (38 bp):
CATTGCCATGAGGGTGAATTGTGATTTTTGCTTCAACC
Found at i:15011209 original size:38 final size:38
Alignment explanation
Indices: 15011087--15011211 Score: 128
Period size: 37 Copynumber: 3.3 Consensus size: 38
15011077 CATGGAGGTG
* * *
15011087 AATTGTGGTTTTT-CTTCAACCCATTGTCATTAGGGTG
1 AATTGTGGTTTTTGTTTCAACCCATTGCCATTAGGGTT
* * * * * *
15011124 AATTGTGATTTTTGTTTCAACCAACTACCACTAGGATT
1 AATTGTGGTTTTTGTTTCAACCCATTGCCATTAGGGTT
* * *
15011162 -ATTGTGGTTTTTGTTTCGACCCATTGGCATTGGGGTT
1 AATTGTGGTTTTTGTTTCAACCCATTGCCATTAGGGTT
15011199 AATTGTGGTTTTT
1 AATTGTGGTTTTT
15011212 TACATTTTTC
Statistics
Matches: 68, Mismatches: 18, Indels: 3
0.76 0.20 0.03
Matches are distributed among these distances:
37 40 0.59
38 28 0.41
ACGTcount: A:0.19, C:0.14, G:0.22, T:0.45
Consensus pattern (38 bp):
AATTGTGGTTTTTGTTTCAACCCATTGCCATTAGGGTT
Found at i:15012034 original size:28 final size:28
Alignment explanation
Indices: 15011982--15012056 Score: 82
Period size: 28 Copynumber: 2.7 Consensus size: 28
15011972 TTTATATCAG
* *
15011982 ATTTATATTAAATGATAATGCAAAAT-T
1 ATTTATATTAAATAATAATGAAAAATAT
*
15012009 ATGTTATATTAAATAATAATTAAAAATAT
1 AT-TTATATTAAATAATAATGAAAAATAT
*
15012038 ATTTA-ATCTACATAATAAT
1 ATTTATAT-TAAATAATAAT
15012057 AACAATAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
27 4 0.10
28 34 0.83
29 3 0.07
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (28 bp):
ATTTATATTAAATAATAATGAAAAATAT
Done.