Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 57 of 203
Found at i:18383019 original size:13 final size:13
Alignment explanation
Indices: 18383001--18383027 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18382991 CTATCATCTA
18383001 TGCTAAACAAATT
1 TGCTAAACAAATT
18383014 TGCTAAACAAATT
1 TGCTAAACAAATT
18383027 T
1 T
18383028 ATTATTACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.33
Consensus pattern (13 bp):
TGCTAAACAAATT
Found at i:18383185 original size:16 final size:16
Alignment explanation
Indices: 18383164--18383196 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
18383154 GAAACACCAA
18383164 TTGTAATAGGCTAATT
1 TTGTAATAGGCTAATT
18383180 TTGTAATAGGCTAATT
1 TTGTAATAGGCTAATT
18383196 T
1 T
18383197 AGCCCAGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.06, G:0.18, T:0.45
Consensus pattern (16 bp):
TTGTAATAGGCTAATT
Found at i:18383410 original size:22 final size:22
Alignment explanation
Indices: 18383363--18383407 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
18383353 ATATAATCTT
*
18383363 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATATTAGA
* *
18383385 AGATATGATTTTGTAATATTAGA
1 AGATATGA-TATGCAATATTAGA
18383408 GATTTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATATTAGA
Found at i:18384029 original size:17 final size:17
Alignment explanation
Indices: 18383991--18384030 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
18383981 TCAATTGCAA
* *
18383991 ATTTTTTTATACTATTT
1 ATTTTTATATACCATTT
18384008 A-TTTTATATACCATTT
1 ATTTTTATATACCATTT
18384024 ATTTTTA
1 ATTTTTA
18384031 AGATGTTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (17 bp):
ATTTTTATATACCATTT
Found at i:18385784 original size:18 final size:17
Alignment explanation
Indices: 18385745--18385789 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
18385735 AAAGGTCACT
*
18385745 TTTTTTATTTTTGTTTC
1 TTTTTTATTTTTGTTTA
* *
18385762 GTTTTTATTGTTTTTTTA
1 TTTTTTATT-TTTGTTTA
18385780 TTTTTTATTT
1 TTTTTTATTT
18385790 CGAAATTCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.09, C:0.02, G:0.07, T:0.82
Consensus pattern (17 bp):
TTTTTTATTTTTGTTTA
Found at i:18386503 original size:3 final size:3
Alignment explanation
Indices: 18386497--18386551 Score: 74
Period size: 3 Copynumber: 18.0 Consensus size: 3
18386487 ATCATTACAT
* * *
18386497 TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA CTA TTA TTA CTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
18386543 TTA TTA TTA
1 TTA TTA TTA
18386552 GTTTTATTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
3 43 0.96
4 2 0.04
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:18386720 original size:14 final size:14
Alignment explanation
Indices: 18386713--18386750 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
18386703 TATACTTATT
18386713 TTTATATATTATAA
1 TTTATATATTATAA
18386727 TTTATATA-TATATA
1 TTTATATATTATA-A
*
18386741 TTCATATATT
1 TTTATATATT
18386751 CATAGCTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 4 0.19
14 16 0.76
15 1 0.05
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (14 bp):
TTTATATATTATAA
Found at i:18392699 original size:20 final size:20
Alignment explanation
Indices: 18392657--18392699 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
18392647 ACCATTCATC
* *
18392657 AAGGTTATTTTCTTGATTCA
1 AAGGTTATTTTCTTGAATAA
* *
18392677 AAGGTTTTTTTTTTGAATAA
1 AAGGTTATTTTCTTGAATAA
18392697 AAG
1 AAG
18392700 CATTATTGGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (20 bp):
AAGGTTATTTTCTTGAATAA
Found at i:18404213 original size:44 final size:44
Alignment explanation
Indices: 18404151--18405647 Score: 1018
Period size: 44 Copynumber: 33.8 Consensus size: 44
18404141 AAGATAACAA
* * *
18404151 ATCTTGTCTTCATGTACTGGCGTGAGGTAGATCAGAGAAACCAA
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGAAACCAG
* ** * * * **
18404195 ATCTTGCCTTCCCATACTGGTGGTGAAGTAGATCAAAGACAGTAG
1 ATCTTGTCTTCATATACTGG-CGTGAAGTAGATCAGAGAAACCAG
* *
18404240 A-CTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAA-CAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGA-AACCAG
** * * ** *
18404283 ATCTTGTCTTCCCATACTGGTGACGAAACAGATC-GAAGAAAGCAG
1 ATCTTGTCTTCATATACTGGCG-TGAAGTAGATCAG-AGAAACCAG
* * *
18404328 ATCTTGTCTTCATGTACTGGTGTGAAGTAGATCAGAGATACCAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGAAACCAG
* ** * * * *
18404372 ATCTTGCCTTCCCATACTGGTGGCGAAGCAGATC-GAAGAAAGCAG
1 ATCTTGTCTTCATATACTGG-CGTGAAGTAGATCAG-AGAAACCAG
* * *
18404417 ATCTTGTCTT--TATATTGGCGGCGAAGTAGATC-GAAGAAAGCAG
1 ATCTTGTCTTCATATACTGGC-GTGAAGTAGATCAG-AGAAACCAG
* * *
18404460 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATACCAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGAAACCAG
* * * *
18404504 ATTTTGTCTTCATGTACTGGCGTGAAATAGATCAAAGATAA-CAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGA-AACCAG
* * * *
18404548 ATCTTGTCTTCCTATACTGGTGGTGAAGTAGGTC-GAAGAAAGCAG
1 ATCTTGTCTTCATATACTGG-CGTGAAGTAGATCAG-AGAAACCAG
* * * *
18404593 ATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAAGATACCAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGAAACCAG
** * *
18404637 ATCTTGTCTTCCCATACTAGTG-GTGAAGTAGATC-GAAGAAAGCAA
1 ATCTTGTCTTCATATACT-G-GCGTGAAGTAGATCAG-AGAAACCAG
* * * *
18404682 ATCTTGTCTCCATGTACTGGCGTGAAGTAGATCAAAGATACCAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGAAACCAG
* * *
18404726 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATACCAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGAAACCAG
* * * * *
18404770 ATCTTGTCTTCATGTACTGGCGTGGAGTAGAT-AAAAAATAACAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGAA-ACCAG
** * * ** *
18404814 ATCTTGTCTTCCCATACTGGTGACGAAACAGATC-GAAGAAAGCAG
1 ATCTTGTCTTCATATACTGGCG-TGAAGTAGATCAG-AGAAACCAG
* * * *
18404859 ATCTTGTCTTCATGTACTAGCGTGAAGTAGATTAGAGATACCAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGAAACCAG
* ** * * *
18404903 ATCTTGCCTTCCCATACTGGTGGCGAA-TCAGATC-GAAGAAATCAG
1 ATCTTGTCTTCATATACTGG-CGTGAAGT-AGATCAG-AGAAACCAG
* * * * *
18404948 ATATTGTCTTCATGTACTGGCGTGAAGTAGATCA-AAAATAACAA
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGAA-ACCAG
* ** * * * * *
18404992 ATCTTATCTTCCCATACTGGTGGCGAAGTAGATCAAATAAAGCAG
1 ATCTTGTCTTCATATACTGG-CGTGAAGTAGATCAGAGAAACCAG
* * *
18405037 ATCTTGTCTTCATGTACTGACGTGAAGTAGATCAAAGATAA-CAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGA-AACCAG
* * * * *
18405081 ATCTTATCTTCCTATACTGGTGGTGAAGTAGATCAAAGAAAGCAG
1 ATCTTGTCTTCATATACTGG-CGTGAAGTAGATCAGAGAAACCAG
* * * * *
18405126 ATCTTGTCTTTATGTACTGGCATGAAGTAGATCAAAGATACCAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGAAACCAG
* * *
18405170 ATTTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAA-CAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGA-AACCAG
* ** * * * * *
18405214 ATCTTATCTTCCCATACTGGTGGCGAAGTAGAT-TGAAAAAAGCAG
1 ATCTTGTCTTCATATACTGG-CGTGAAGTAGATCAG-AGAAACCAG
* * * *
18405259 ATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAAGATACCAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGAAACCAG
* ** * * * **
18405303 ATCTTGTTTTCCCATACTGGTGGCGAAGTAAATC-GAAGAAAGTAG
1 ATCTTGTCTTCATATACTGG-CGTGAAGTAGATCAG-AGAAACCAG
* * *
18405348 ATCTTGTCTTCATGTACTGGCGTGGAGTAGATCAAAGATAA-CAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGA-AACCAG
*
18405392 ATCTTGTCTTACCATACTGA-TGGC--GAAGTAGATC-GAAGAAAACAG
1 ATCTTGTCTT--CATA-T-ACTGGCGTGAAGTAGATCAG-AGAAACCAG
* * *
18405437 ATCTTGTTTTCATGTACTGGCGTGAAGTAGATCA-ACGATACCAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGA-GAAACCAG
** * * * *
18405481 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC-GAAGAAAACAG
1 ATCTTGTCTTCATATACTGG-CGTGAAGTAGATCAG-AGAAACCAG
* *
18405526 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAA-CAG
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGA-AACCAG
* * * ** * *
18405570 ATCTTGTCTTCCTATACTGGTTGCGAAACAGATC-GAAAAAACAG
1 ATCTTGTCTTCATATACTGG-CGTGAAGTAGATCAGAGAAACCAG
* * * * *
18405614 ACCTTGTCTTCATGTATTGGCATGAAATAGATCA
1 ATCTTGTCTTCATATACTGGCGTGAAGTAGATCA
18405648 AGCATAGCAG
Statistics
Matches: 1133, Mismatches: 253, Indels: 134
0.75 0.17 0.09
Matches are distributed among these distances:
41 1 0.00
42 5 0.00
43 81 0.07
44 617 0.54
45 412 0.36
46 11 0.01
47 5 0.00
48 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (44 bp):
ATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGAAACCAG
Found at i:18404360 original size:89 final size:89
Alignment explanation
Indices: 18404151--18405589 Score: 1349
Period size: 89 Copynumber: 16.2 Consensus size: 89
18404141 AAGATAACAA
* * * *
18404151 ATCTTGTCTTCATGTACTGGCGTGAGGTAGATCAGAGA-AACCAAATCTTGCCTTCCCATACTGG
1 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAA-CAGATCTTGTCTTCCCATACTGG
* * *
18404215 TGGTGAAGTAGATCAAAGACAGTAG
65 TGGTGAAGTAGATCGAAGAAAGCAG
18404240 A-CTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGT
1 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGT
** **
18404304 GACGAAACAGATCGAAGAAAGCAG
66 GGTGAAGTAGATCGAAGAAAGCAG
* * * *
18404328 ATCTTGTCTTCATGTACTGGTGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGT
1 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGT
* *
18404393 GGCGAAGCAGATCGAAGAAAGCAG
66 GGTGAAGTAGATCGAAGAAAGCAG
* * * * ***
18404417 ATCTTGTCTT--TATATTGGCGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATGTACTG
1 ATCTTGTCTTCATGTACTGGC-GTGAAGTAGATCAAAGATAA-CAGATCTTGTCTTCCCATACTG
* * * *
18404479 G-CGTGAAGTAGATCAAAGATACCAG
64 GTGGTGAAGTAGATCGAAGAAAGCAG
* * *
18404504 ATTTTGTCTTCATGTACTGGCGTGAAATAGATCAAAGATAACAGATCTTGTCTTCCTATACTGGT
1 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGT
*
18404569 GGTGAAGTAGGTCGAAGAAAGCAG
66 GGTGAAGTAGATCGAAGAAAGCAG
* * *
18404593 ATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTAGT
1 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGT
*
18404658 GGTGAAGTAGATCGAAGAAAGCAA
66 GGTGAAGTAGATCGAAGAAAGCAG
* * ***
18404682 ATCTTGTCTCCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACTGG-
1 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGT
* * * *
18404746 CGTGAAGTAGATCAAAGATACCAG
66 GGTGAAGTAGATCGAAGAAAGCAG
* * *
18404770 ATCTTGTCTTCATGTACTGGCGTGGAGTAGATAAAAAATAACAGATCTTGTCTTCCCATACTGGT
1 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGT
** **
18404835 GACGAAACAGATCGAAGAAAGCAG
66 GGTGAAGTAGATCGAAGAAAGCAG
* * * * *
18404859 ATCTTGTCTTCATGTACTAGCGTGAAGTAGATTAGAGATACCAGATCTTGCCTTCCCATACTGGT
1 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGT
* *
18404924 GGCGAA-TCAGATCGAAGAAATCAG
66 GGTGAAGT-AGATCGAAGAAAGCAG
* * * *
18404948 ATATTGTCTTCATGTACTGGCGTGAAGTAGATCAAAAATAACAAATCTTATCTTCCCATACTGGT
1 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGT
* * *
18405013 GGCGAAGTAGATCAAATAAAGCAG
66 GGTGAAGTAGATCGAAGAAAGCAG
* * *
18405037 ATCTTGTCTTCATGTACTGACGTGAAGTAGATCAAAGATAACAGATCTTATCTTCCTATACTGGT
1 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGT
*
18405102 GGTGAAGTAGATCAAAGAAAGCAG
66 GGTGAAGTAGATCGAAGAAAGCAG
* * * * ***
18405126 ATCTTGTCTTTATGTACTGGCATGAAGTAGATCAAAGATACCAGATTTTGTCTTCATGTACTGG-
1 ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGT
* *
18405190 CGTGAAGTAGATCAAAGATAA-CAG
66 GGTGAAGTAGATCGAAGA-AAGCAG
* *** * * * ***
18405214 ATCTTATCTTCCCATACTGGTGGCGAAGTAGATTGAAA-A-AAGCAGATCTTGTCTTCATGTACT
1 ATCTTGTCTTCATGTACTGG-CGTGAAGTAGA-TCAAAGATAA-CAGATCTTGTCTTCCCATACT
* * * * *
18405277 GG-CGTAAAGTAGATCAAAGATACCAG
63 GGTGGTGAAGTAGATCGAAGAAAGCAG
* *** * * * * * ***
18405303 ATCTTGTTTTCCCATACTGGTGGCGAAGTAAATCGAAGA-AAGTAGATCTTGTCTTCATGTACTG
1 ATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGATAA-CAGATCTTGTCTTCCCATACTG
* * *
18405367 G-CGTGGAGTAGATCAAAGATAA-CAG
64 GTGGTGAAGTAGATCGAAGA-AAGCAG
* * * * ***
18405392 ATCTTGTCTTACCA--TACTGATG-GCGAAGTAGATCGAAGAAAACAGATCTTGTTTTCATGTAC
1 ATCTTGTCTT--CATGTACTG--GCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATAC
* * *
18405454 TGG-CGTGAAGTAGATC-AACGATACCAG
62 TGGTGGTGAAGTAGATCGAA-GAAAGCAG
*** * * * * * ***
18405481 ATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACTGG
1 ATCTTGTCTTCATGTACTGG-CGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGG
* *
18405546 -CGTGAAGTAGATCAAAGATAA-CAG
65 TGGTGAAGTAGATCGAAGA-AAGCAG
* *
18405570 ATCTTGTCTTCCTATACTGG
1 ATCTTGTCTTCATGTACTGG
18405590 TTGCGAAACA
Statistics
Matches: 1164, Mismatches: 155, Indels: 62
0.84 0.11 0.04
Matches are distributed among these distances:
87 36 0.03
88 260 0.22
89 855 0.73
90 11 0.01
91 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (89 bp):
ATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGT
GGTGAAGTAGATCGAAGAAAGCAG
Found at i:18404611 original size:133 final size:133
Alignment explanation
Indices: 18404140--18405589 Score: 1491
Period size: 133 Copynumber: 10.9 Consensus size: 133
18404130 GAACAGGTTG
* * * * * * * *
18404140 AAAGATAACAAATCTTGTCTTCATGTACTGG-CGTGAGGTAGATC-AGAGAAACCAAATCTTGCC
1 AAAGATAACAGATCTTGTCTTCCTATACTGGTGGTGAAGTAGATCGA-AGAAAGCAGATCTTGTC
*** * * **
18404203 TTCCCATACTGGTGGTGAAGTAGATCAAAGACAGTAGA-CTTGTCTTCATGTACTGGCGTGAAGT
65 TTCATGTACTGG-CGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACTGGCGTGAAGT
18404267 AGATC
129 AGATC
* ** **
18404272 AAAGATAACAGATCTTGTCTTCCCATACTGGTGACGAAACAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCTATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* * * *** * * *
18404337 TCATGTACTGGTGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCA
66 TCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACTGG-CGTGAAGTA
18404402 GATC
130 GATC
* * * *
18404406 GAAGA-AAGCAGATCTTGTCTT--TATATTGGCGGCGAAGTAGATCGAAGAAAGCAGATCTTGTC
1 AAAGATAA-CAGATCTTGTCTTCCTATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTC
* *
18404468 TTCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATTTTGTCTTCATGTACTGGCGTGAAATA
65 TTCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACTGGCGTGAAGTA
18404533 GATC
130 GATC
*
18404537 AAAGATAACAGATCTTGTCTTCCTATACTGGTGGTGAAGTAGGTCGAAGAAAGCAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCTATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* ***
18404602 TCATGTACTGGCGTAAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTAGTG-GTGAAGT
66 TCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACT-G-GCGTGAAGT
18404666 AGATC
129 AGATC
* * * * * * *
18404671 GAAGA-AAGCAAATCTTGTC-TCCATGTACTGG-CGTGAAGTAGATCAAAGATACCAGATCTTGT
1 AAAGATAA-CAGATCTTGTCTTCC-TATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGT
*
18404733 CTTCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACTGGCGTGGAGT
64 CTTCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACTGGCGTGAAGT
*
18404798 AGATA
129 AGATC
* * ** **
18404803 AAAAATAACAGATCTTGTCTTCCCATACTGGTGACGAAACAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCTATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* * * * *** * *
18404868 TCATGTACTAGCGTGAAGTAGATTAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAA-TC
66 TCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACTGG-CGTGAAGT-
18404932 AGATC
129 AGATC
* * * * * * * * *
18404937 GAAGA-AATCAGATATTGTCTTCATGTACTGG-CGTGAAGTAGATC-AAAAATAACAAATCTTAT
1 AAAGATAA-CAGATCTTGTCTTCCTATACTGGTGGTGAAGTAGATCGAAGAA-AGCAGATCTTGT
*** * * * * * *
18404999 CTTCCCATACTGGTGGCGAAGTAGATCAAATAAAGCAGATCTTGTCTTCATGTACTGACGTGAAG
64 CTTCATGTACTGG-CGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACTGGCGTGAAG
18405064 TAGATC
128 TAGATC
* *
18405070 AAAGATAACAGATCTTATCTTCCTATACTGGTGGTGAAGTAGATCAAAGAAAGCAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCTATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* * *
18405135 TTATGTACTGGCATGAAGTAGATCAAAGATACCAGATTTTGTCTTCATGTACTGGCGTGAAGTAG
66 TCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACTGGCGTGAAGTAG
18405200 ATC
131 ATC
* * * * *
18405203 AAAGATAACAGATCTTATCTTCCCATACTGGTGGCGAAGTAGATTGAAAAAAGCAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCTATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* * *** * *
18405268 TCATGTACTGGCGTAAAGTAGATCAAAGATACCAGATCTTGTTTTCCCATACTGGTGGCGAAGTA
66 TCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACTGG-CGTGAAGTA
*
18405333 AATC
130 GATC
* * * * * * *
18405337 GAAGA-AAGTAGATCTTGTCTTCATGTACTGG-CGTGGAGTAGATCAAAGATAA-CAGATCTTGT
1 AAAGATAA-CAGATCTTGTCTTCCTATACTGGTGGTGAAGTAGATCGAAGA-AAGCAGATCTTGT
* * * * *
18405399 CTTACCA--TACTGATG-GCGAAGTAGATCGAAGAAAACAGATCTTGTTTTCATGTACTGGCGTG
64 CTT--CATGTACTG--GCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACTGGCGTG
18405461 AAGTAGATC
125 AAGTAGATC
* * * * * *
18405470 AACGATACCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCTATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* * *
18405535 TCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCTATACTGG
66 TCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACTGG
18405590 TTGCGAAACA
Statistics
Matches: 1073, Mismatches: 207, Indels: 75
0.79 0.15 0.06
Matches are distributed among these distances:
131 27 0.03
132 170 0.16
133 611 0.57
134 257 0.24
135 8 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (133 bp):
AAAGATAACAGATCTTGTCTTCCTATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCT
TCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACTGGCGTGAAGTAG
ATC
Found at i:18404720 original size:222 final size:221
Alignment explanation
Indices: 18404151--18405661 Score: 1439
Period size: 222 Copynumber: 6.8 Consensus size: 221
18404141 AAGATAACAA
* * * * *
18404151 ATCTTGTCTTCATGTACTGGCGTGAGGTAGATCAGAGAAACCAAATCTTGCCTTCCCATACTGGT
1 ATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGGT
* * * *
18404216 GGTGAAGTAGATCAAAGACAGTAGA-CTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAA
66 GGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAC
*** * * ** * *
18404280 CAGATCTTGTCTTCCCATACTGGTGACGAAACAGATCGAAGA-AAGCAGATCTTGTCTTCATGTA
131 CAGATCTTGTCTTCATGTACTGGCG-TGAAGTAGATCAAAGATAA-CAGATCTTGTCTTCATATA
* *
18404344 CTGGT-GTGAAGTAGATCAGAGATACCAG
194 CTGGTGGTGAAGTAGATCA-AGAAAGCAG
* *** * ** * * * * *
18404372 ATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTT--TATATTGG
1 ATCTTGTCTTCATGTACTGG-CGTAAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGG
* *
18404435 CGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATA
65 TGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATA
* * *
18404500 CCAGATTTTGTCTTCATGTACTGGCGTGAAATAGATCAAAGATAACAGATCTTGTCTTCCTATAC
130 CCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCATATAC
*
18404565 TGGTGGTGAAGTAGGTCGAAGAAAGCAG
195 TGGTGGTGAAGTAGATC-AAGAAAGCAG
* *
18404593 ATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTAGT
1 ATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGGT
* *
18404658 GGTGAAGTAGATCGAAGAAAGCAAATCTTGTCTCCATGTACTGGCGTGAAGTAGATCAAAGATAC
66 GGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAC
* *
18404723 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTACT
131 CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCATATACT
* * * * *
18404788 GG-CGTGGAGTAGATAAAAAATAACAG
196 GGTGGTGAAGTAGATCAAGAA-AGCAG
*** * * * ***
18404814 ATCTTGTCTTCCCATACTGGTGACG-AAA-CAGATCGAAGAAAGCAGATCTTGTCTTCATGTACT
1 ATCTTGTCTTCATGTACT-G-G-CGTAAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACT
* * * * * * *** * * *
18404877 AG-CGTGAAGTAGAT-TAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAA-TCAGATCGA
63 GGTGGTGAAGTAGATCGA-AGAAAGCAGATCTTGTCTTCATGTACTGG-CGTGAAGT-AGATCAA
* * * * * * *
18404939 AGAAATCAGATATTGTCTTCATGTACTGGCGTGAAGTAGATCAAAAATAACAAATCTTATCTTCC
125 AGATACCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCA
* * *
18405004 CATACTGGTGGCGAAGTAGATCAAATAAAGCAG
190 TATACTGGTGGTGAAGTAGATC-AAGAAAGCAG
* * * *
18405037 ATCTTGTCTTCATGTACTGACGTGAAGTAGATCAAAGATAA-CAGATCTTATCTTCCTATACTGG
1 ATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAAGA-AACCAGATCTTGTCTTCCCATACTGG
* * *
18405101 TGGTGAAGTAGATCAAAGAAAGCAGATCTTGTCTTTATGTACTGGCATGAAGTAGATCAAAGATA
65 TGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATA
* * **
18405166 CCAGATTTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTATCTTCCCATAC
130 CCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCATATAC
* * *
18405231 TGGTGGCGAAGTAGATTGAAAAAAGCAG
195 TGGTGGTGAAGTAGA-TCAAGAAAGCAG
* *
18405259 ATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAAGATACCAGATCTTGTTTTCCCATACTGGT
1 ATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGGT
* * * * *
18405324 GGCGAAGTAAATCGAAGAAAGTAGATCTTGTCTTCATGTACTGGCGTGGAGTAGATCAAAGATAA
66 GGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAC
* * * * *
18405389 CAGATCTTGTCTTACCA--TACTGATG-GCGAAGTAGATCGAAGAAAACAGATCTTGTTTTCATG
131 CAGATCTTGTCTT--CATGTACTG--GCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCATA
* * *
18405451 TACTGG-CGTGAAGTAGATCAACGATACCAG
192 TACTGGTGGTGAAGTAGATCAA-GAAAGCAG
* ** * * ***
18405481 ATCTTGTCTTCCCATATTGGTGGCG--AAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTACT
1 ATCTTGTCTT--CAT-GTACTGGCGTAAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACT
* * * * * * **
18405544 GG-CGTGAAGTAGATCAAAGATAA-CAGATCTTGTCTTCCTATACTGGTTGCGAAACAGATCGAA
63 GGTGGTGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATC-AA
* * * * * *
18405607 A-A-AACAGACCTTGTCTTCATGTATTGGCATGAAATAGATC-AAGCATAGCAGATCT
125 AGATACCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAG-ATAACAGATCT
18405662 CATTACTCTG
Statistics
Matches: 1060, Mismatches: 191, Indels: 78
0.80 0.14 0.06
Matches are distributed among these distances:
220 102 0.10
221 195 0.18
222 593 0.56
223 148 0.14
224 16 0.02
225 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (221 bp):
ATCTTGTCTTCATGTACTGGCGTAAAGTAGATCAAAGAAACCAGATCTTGTCTTCCCATACTGGT
GGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAC
CAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCATATACT
GGTGGTGAAGTAGATCAAGAAAGCAG
Found at i:18408748 original size:16 final size:16
Alignment explanation
Indices: 18408727--18408781 Score: 76
Period size: 16 Copynumber: 3.4 Consensus size: 16
18408717 TGAATTACTG
* *
18408727 ATTACAACTTTATTCC
1 ATTACAGCTCTATTCC
18408743 ATTACAGCTCTATT-C
1 ATTACAGCTCTATTCC
18408758 ATTTACAGCTCTATTCC
1 A-TTACAGCTCTATTCC
18408775 ATTACAG
1 ATTACAG
18408782 TGAACCAAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 2 0.06
16 31 0.89
17 2 0.06
ACGTcount: A:0.29, C:0.25, G:0.05, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:18409029 original size:19 final size:20
Alignment explanation
Indices: 18408974--18409046 Score: 68
Period size: 20 Copynumber: 3.9 Consensus size: 20
18408964 TTAATATTTT
*
18408974 ATATTTAAAAT-TATAAAAA
1 ATATTTAAAATATACAAAAA
* *
18408993 TTATTTTAAAAT-T--GAAAA
1 ATA-TTTAAAATATACAAAAA
18409011 ATA-TTAAAATA-ACAAAAA
1 ATATTTAAAATATACAAAAA
18409029 ATATTTAAAATATACAAA
1 ATATTTAAAATATACAAA
18409047 TTATGAAGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
16 7 0.16
18 13 0.30
19 10 0.23
20 14 0.32
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (20 bp):
ATATTTAAAATATACAAAAA
Found at i:18415844 original size:21 final size:21
Alignment explanation
Indices: 18415810--18415871 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 21
18415800 ATAAGTGCTA
* *
18415810 AACGAAAATCCATAAGGGTTG
1 AACGGAAACCCATAAGGGTTG
* * *
18415831 AACGGAAGCTCAT-AGGAGCTG
1 AACGGAAACCCATAAGG-GTTG
*
18415852 AATGGAAACCCATAAGGGTT
1 AACGGAAACCCATAAGGGTT
18415872 AATCTAAAGC
Statistics
Matches: 30, Mismatches: 9, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
20 3 0.10
21 24 0.80
22 3 0.10
ACGTcount: A:0.39, C:0.16, G:0.27, T:0.18
Consensus pattern (21 bp):
AACGGAAACCCATAAGGGTTG
Found at i:18415963 original size:42 final size:42
Alignment explanation
Indices: 18415856--18415965 Score: 98
Period size: 42 Copynumber: 2.6 Consensus size: 42
18415846 GAGCTGAATG
* *
18415856 GAAACCCATAAGGGTTAATCT-AAAGCTCAGAAGAGCTAAACT
1 GAAACCCAAAAGGGTTAATCTGAAA-CCCAGAAGAGCTAAACT
* * * * * * *
18415898 GAAGCTCAAAAGAGCTGAA-CTGAAACCCAGAAGGGTTAATCT
1 GAAACCCAAAAG-GGTTAATCTGAAACCCAGAAGAGCTAAACT
*
18415940 GAAACCCAGAAGGGTTAATCTGAAAC
1 GAAACCCAAAAGGGTTAATCTGAAAC
18415966 TCATACGAGT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
41 4 0.08
42 40 0.78
43 7 0.14
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.17
Consensus pattern (42 bp):
GAAACCCAAAAGGGTTAATCTGAAACCCAGAAGAGCTAAACT
Found at i:18415978 original size:21 final size:21
Alignment explanation
Indices: 18415856--18415965 Score: 89
Period size: 21 Copynumber: 5.2 Consensus size: 21
18415846 GAGCTGAATG
* *
18415856 GAAACCCATAAGGGTTAATCT
1 GAAACCCAGAAGAGTTAATCT
* * *
18415877 -AAAGCTCAGAAGAGCTAAACT
1 GAAA-CCCAGAAGAGTTAATCT
* * * *
18415898 GAAGCTCAAAAGAGCTGAA-CT
1 GAAACCCAGAAGAG-TTAATCT
*
18415919 GAAACCCAGAAGGGTTAATCT
1 GAAACCCAGAAGAGTTAATCT
*
18415940 GAAACCCAGAAGGGTTAATCT
1 GAAACCCAGAAGAGTTAATCT
18415961 GAAAC
1 GAAAC
18415966 TCATACGAGT
Statistics
Matches: 71, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
20 6 0.08
21 61 0.86
22 4 0.06
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.17
Consensus pattern (21 bp):
GAAACCCAGAAGAGTTAATCT
Found at i:18445340 original size:5 final size:5
Alignment explanation
Indices: 18445324--18445364 Score: 73
Period size: 5 Copynumber: 8.2 Consensus size: 5
18445314 CCAGACCTAC
*
18445324 ACTAG ACAAG ACTAG ACTAG ACTAG ACTAG ACTAG ACTAG A
1 ACTAG ACTAG ACTAG ACTAG ACTAG ACTAG ACTAG ACTAG A
18445365 GAAAGCAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 34 1.00
ACGTcount: A:0.44, C:0.20, G:0.20, T:0.17
Consensus pattern (5 bp):
ACTAG
Found at i:18454415 original size:57 final size:56
Alignment explanation
Indices: 18454327--18454441 Score: 194
Period size: 57 Copynumber: 2.0 Consensus size: 56
18454317 AATTTCATAT
*
18454327 CATCAAACACAAGTGAATTCTCAATTTATGAGAAAAGTTAAAGGGAATTCTATCCAC
1 CATCAAACACAAATGAATTCTCAATTTATGAGAAAAGTT-AAGGGAATTCTATCCAC
**
18454384 CATCAAACACAAATGAATTCTCAATTTATGAGAACTGTTAAGGGAATTCTATCCAC
1 CATCAAACACAAATGAATTCTCAATTTATGAGAAAAGTTAAGGGAATTCTATCCAC
18454440 CA
1 CA
18454442 AAAGTAAAAG
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
56 19 0.35
57 36 0.65
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (56 bp):
CATCAAACACAAATGAATTCTCAATTTATGAGAAAAGTTAAGGGAATTCTATCCAC
Found at i:18457500 original size:30 final size:31
Alignment explanation
Indices: 18457444--18457517 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 31
18457434 GATTGCTTTG
* * **
18457444 TCACTTTTCATAAACGTTAATGACTGATTTA
1 TCACTTTTAATAAACGTTAATAACTGAAATA
* *
18457475 TCACTTTTTATAAA-TTTAATAACTGAAATA
1 TCACTTTTAATAAACGTTAATAACTGAAATA
18457505 TCA-TTTTAATAAA
1 TCACTTTTAATAAA
18457518 AATTTAGTGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 9 0.24
30 15 0.41
31 13 0.35
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.43
Consensus pattern (31 bp):
TCACTTTTAATAAACGTTAATAACTGAAATA
Found at i:18460979 original size:133 final size:131
Alignment explanation
Indices: 18460756--18461721 Score: 1402
Period size: 133 Copynumber: 7.3 Consensus size: 131
18460746 TCAGTCTGCG
* * * * *
18460756 TCACTGCCAATATAAGAAGACAGGATCTGCTATTTTCGATCCACTTTACGCCAATACATGAAGAC
1 TCACTACCAATAT-AGAAGACAAGATCTGTTATCTTCGATCTAC-TTACGCCAATACATGAAGAC
* * *
18460821 AAGATCTACTTTCTTCGATCTACTTCGCCACCAATATGGGAAGATAAGATCTGCATCTTCGATCC
64 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCC
18460886 ACT
129 ACT
* * * * *
18460889 TCAC-GCCAATACATGAAGACAAGATCTGCTT-TCTTCGATCTACTT-TGCCACTAGTATGGGAA
1 TCACTACCAATATA-GAAGACAAGATCTG-TTATCTTCGATCTACTTACGCCAATA-CAT--GAA
* *
18460951 GACAAGATCTGCTTTCTTCGATCCACTTCGCCACCAGTATGGGAAGACCAGATCTGCATCTTCGA
61 GACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGA
18461016 TCCACT
126 TCCACT
18461022 TCACTACCAATATAGAAAGACAAGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 TCACTACCAATATAG-AAGACAAGATCTGTTATCTTCGATCTACTT-ACGCCAATACATGAAGAC
* *
18461087 AAGATCTGCTTTCTTCGATCTACTTTGCCACTAGTATGGGAAGACAAGATCTGCATCTTCGATCC
64 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCC
18461152 ACT
129 ACT
18461155 TCACTACCAATATAGAAAGACAAGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 TCACTACCAATATAG-AAGACAAGATCTGTTATCTTCGATCTACTT-ACGCCAATACATGAAGAC
* *
18461220 AAGATCTGCTTTCTTC-ATTCTACTTTGCCACTAGTATGGGAAGACAAGATCTGCATCTTCGATC
64 AAGATCTGCTTTCTTCGA-TCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATC
18461284 CACT
128 CACT
18461288 TCACTACCAATATAGGAAGAC-AGAATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGA
1 TCACTACCAATATA-GAAGACAAG-ATCTGTTATCTTCGATCTACTT-ACGCCAATACATGAAGA
* *
18461352 CAAGATCTGCTTTCTTCGATCCACTTCGCCACCAGTATGGGAAGACCAGATCTGCATCTTCGATC
63 CAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATC
18461417 CACT
128 CACT
* *
18461421 TCGCTACCAATATAGAAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 TCACTACCAATATAG-AAGACAAGATCTGTTATCTTCGATCTACTT-ACGCCAATACATGAAGAC
* *
18461486 AAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAATATCTGCATCTTCGATCC
64 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCC
18461551 ACT
129 ACT
**
18461554 TCGGTACCAATATAGGAAGACAAGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGAC
1 TCACTACCAATATA-GAAGACAAGATCTGTTATCTTCGATCTACTT-ACGCCAATACATGAAGAC
* * * * *
18461619 AAGATCTGCTTTCTTCGTTCTAATTTGCCACTAGTATGGGAAGACAAGATCTGCATCTTCGGTCC
64 AAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCC
18461684 ACT
129 ACT
* * *
18461687 TCGCTACCAATATAGGAAGACAGGATCTGCTATCT
1 TCACTACCAATATA-GAAGACAAGATCTGTTATCT
18461722 GTGAATCATG
Statistics
Matches: 772, Mismatches: 44, Indels: 34
0.91 0.05 0.04
Matches are distributed among these distances:
130 6 0.01
131 5 0.01
132 34 0.04
133 681 0.88
134 38 0.05
135 2 0.00
136 6 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (131 bp):
TCACTACCAATATAGAAGACAAGATCTGTTATCTTCGATCTACTTACGCCAATACATGAAGACAA
GATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCAC
T
Found at i:18463260 original size:73 final size:73
Alignment explanation
Indices: 18463173--18463319 Score: 267
Period size: 73 Copynumber: 2.0 Consensus size: 73
18463163 ATCATACCGA
18463173 GATTGGAGCCATTCAGCCTCATCGAATTTTAATTCAGCCAATACCCAGAGAGAAAGAATTTCGAC
1 GATTGGAGCCATTCAGCCTCATCGAATTTTAATTCAGCCAATACCCAGAGAGAAAGAATTTCGAC
18463238 TTCAATGG
66 TTCAATGG
* * *
18463246 GATTGGAGCCATTCAGCCTCATCGAATTTTAATTCAGCCAATACTCGGAGAGAAGGAATTTCGAC
1 GATTGGAGCCATTCAGCCTCATCGAATTTTAATTCAGCCAATACCCAGAGAGAAAGAATTTCGAC
18463311 TTCAATGG
66 TTCAATGG
18463319 G
1 G
18463320 TAGGACTGCT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (73 bp):
GATTGGAGCCATTCAGCCTCATCGAATTTTAATTCAGCCAATACCCAGAGAGAAAGAATTTCGAC
TTCAATGG
Found at i:18478150 original size:14 final size:13
Alignment explanation
Indices: 18478131--18478171 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 13
18478121 CTTCCTTTGT
18478131 TTTGGGCCATTGTA
1 TTTGGGCCA-TGTA
*
18478145 TTTGGGTCAT-TA
1 TTTGGGCCATGTA
18478157 -TTGGGCCATGTA
1 TTTGGGCCATGTA
18478169 TTT
1 TTT
18478172 TTGTCCTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
11 8 0.35
12 4 0.17
13 3 0.13
14 8 0.35
ACGTcount: A:0.15, C:0.12, G:0.27, T:0.46
Consensus pattern (13 bp):
TTTGGGCCATGTA
Found at i:18486552 original size:21 final size:21
Alignment explanation
Indices: 18486461--18486561 Score: 59
Period size: 20 Copynumber: 4.9 Consensus size: 21
18486451 TTTCATGTTT
*
18486461 GCTTTCCGTTTAGCTCTTATGA
1 GCTTT-CGTTTAACTCTTATGA
*
18486483 GC-TTCAG-TTAACTCATATGA
1 GCTTTC-GTTTAACTCTTATGA
* *
18486503 G-TTTTGTTTAAC-CCTATTG-
1 GCTTTCGTTTAACTCTTA-TGA
* *
18486522 GGTTTCCGTTTAGCTCTTATGA
1 GCTTT-CGTTTAACTCTTATGA
* *
18486544 GCTTTCGTTCAACCCTTA
1 GCTTTCGTTTAACTCTTA
18486562 CGGGTTTCTG
Statistics
Matches: 60, Mismatches: 11, Indels: 17
0.68 0.12 0.19
Matches are distributed among these distances:
19 5 0.08
20 25 0.42
21 21 0.35
22 9 0.15
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.44
Consensus pattern (21 bp):
GCTTTCGTTTAACTCTTATGA
Found at i:18486559 original size:42 final size:41
Alignment explanation
Indices: 18486498--18486577 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 41
18486488 AGTTAACTCA
* * *
18486498 TATGAGTTTTGTTTAACCC-TATTGGGTTTCCGTTTAGCTCT
1 TATGAGTTTCGTTCAACCCTTA-CGGGTTTCCGTTTAGCTCT
*
18486539 TATGAGCTTTCGTTCAACCCTTACGGGTTTCTGTTTAGC
1 TATGAG-TTTCGTTCAACCCTTACGGGTTTCCGTTTAGC
18486578 AATTATGTGC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
41 6 0.18
42 25 0.76
43 2 0.06
ACGTcount: A:0.15, C:0.20, G:0.20, T:0.45
Consensus pattern (41 bp):
TATGAGTTTCGTTCAACCCTTACGGGTTTCCGTTTAGCTCT
Found at i:18488939 original size:25 final size:25
Alignment explanation
Indices: 18488895--18488960 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
18488885 TTCATGATAC
* *
18488895 ATATCATCTTTTAC-TGTTT-CTTCA
1 ATATCATCCTTTACAT-TTTCCGTCA
18488919 TATATCATCCTTTACATTTTCCGTCA
1 -ATATCATCCTTTACATTTTCCGTCA
18488945 AT-TCATCCTTTACATT
1 ATATCATCCTTTACATT
18488961 CGTAGTGCCA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
24 14 0.38
25 18 0.49
26 5 0.14
ACGTcount: A:0.23, C:0.24, G:0.03, T:0.50
Consensus pattern (25 bp):
ATATCATCCTTTACATTTTCCGTCA
Found at i:18489083 original size:90 final size:90
Alignment explanation
Indices: 18488954--18489133 Score: 283
Period size: 90 Copynumber: 2.0 Consensus size: 90
18488944 AATTCATCCT
* *
18488954 TTACATTCGTAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGAT-ATAGCCTAGCTATGG
1 TTACATTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATG-TCATAGCCCAGCTATGG
18489018 TCTTACATATAAAAACTAC-CATGGTC
65 TCTTACATATAAAAACT-CTCATGGTC
* *
18489044 TTACGTTCATAGTGCCATAGCCCAATTATGGTCTTATCATCAGAATGTCATAGCCCAGCTATGGT
1 TTACATTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGTCATAGCCCAGCTATGGT
*
18489109 CTTACATATAAACACTCTCATGGTC
66 CTTACATATAAAAACTCTCATGGTC
18489134 CAACCATGGT
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
89 2 0.02
90 81 0.98
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (90 bp):
TTACATTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGTCATAGCCCAGCTATGGT
CTTACATATAAAAACTCTCATGGTC
Found at i:18489210 original size:101 final size:101
Alignment explanation
Indices: 18489035--18489248 Score: 295
Period size: 101 Copynumber: 2.1 Consensus size: 101
18489025 TATAAAAACT
* * *
18489035 ACCATGGTCTTACGTTCATAGTGCCATAGCCCAATTATGGTCTTATCATCAGAATGTCATAGCCC
1 ACCATGGTCTTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAAAATGTCACAGCCC
* *
18489100 AGCTATGGTCTTACATATAAACA-CTCTCATGGTCCA
66 AACCATGGTCTTACATATAAACATCTC-CATGGTCCA
* * * * *
18489136 ACCATGGTCTTACGTTCATAGTGTCATAACCCAGTTATGGTCTTTTCATTAAAATGTCACAGCTC
1 ACCATGGTCTTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAAAATGTCACAGCCC
* * *
18489201 AACCATGGTCTTACATTTAAACATTTCCATGGTCTA
66 AACCATGGTCTTACATATAAACATCTCCATGGTCCA
18489237 ACCATGGTCTTA
1 ACCATGGTCTTA
18489249 TTCGTCAATT
Statistics
Matches: 99, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 97 0.98
102 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (101 bp):
ACCATGGTCTTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAAAATGTCACAGCCC
AACCATGGTCTTACATATAAACATCTCCATGGTCCA
Found at i:18491154 original size:11 final size:11
Alignment explanation
Indices: 18491138--18491181 Score: 61
Period size: 11 Copynumber: 3.8 Consensus size: 11
18491128 TTATATACTA
18491138 AATAAAATATT
1 AATAAAATATT
18491149 AATAAAATATTTT
1 AATAAAATA--TT
*
18491162 ATTAAAATATT
1 AATAAAATATT
18491173 AATAAAATA
1 AATAAAATA
18491182 ATATTTATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 19 0.66
13 10 0.34
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
AATAAAATATT
Found at i:18497854 original size:106 final size:105
Alignment explanation
Indices: 18497659--18498333 Score: 818
Period size: 104 Copynumber: 6.5 Consensus size: 105
18497649 AAATTTTTTG
* ******
18497659 GGTGCTGGCCTGTCAATGGCTGGCACCCAGTACAATTTTTAAATTTTTTTTTCTTTTTTTGT-GT
1 GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAA-TTTTAAA--AAAAAATCTTTTTTT-TCGT
*
18497723 GTCATAATCAGATATAAATATACGAAAAAAATAAAAAAAAAATTT
62 GTCAGAATCAGATATAAATATACGAAAAAAAT-AAAAAAAAATTT
* *
18497768 GGTGCTGGCTTGTCAATGGCCGGCACCCAATACAATTTTAAAAAAAAATCTTTTTTTTCGTGTCA
1 GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAAAAAAATCTTTTTTTTCGTGTCA
18497833 GAATCAGATATAAATATACG--AAAAATAAAAAATAAATTT
66 GAATCAGATATAAATATACGAAAAAAATAAAAAA-AAATTT
* * * * * *
18497872 AGTGTTGGCCTGTCAATGGCTGGCACCCAGTACAATATTAAAAAAAATTCTTTCTTTTCGTGTCA
1 GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAAAAAAATCTTTTTTTTCGTGTCA
* * **
18497937 GAATCAGATATCAGTATACGAAAAAAATAAAAAAATTTTT
66 GAATCAGATATAAATATACGAAAAAAATAAAAAAAAATTT
* *
18497977 GAGTGCTGGCCTATCAATGGCCGGCACCCAGTACAA-TTTAAAAAAAATTCCTTTTTTTT-GTGT
1 G-GTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAAAAAAAT-CTTTTTTTTCGTGT
18498040 CAGAATCAGATATAAATATACGAAAAAAAT-AAAAAAAATTT
64 CAGAATCAGATATAAATATACGAAAAAAATAAAAAAAAATTT
* *
18498081 GGGTGCTGGTCTGTCAATGGCCGGCACCCAGTACAA-TTT-------AAT-TTTTTTTTTGTGTC
1 -GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAAAAAAATCTTTTTTTTCGTGTC
*
18498137 AGAATAAGATATAAATATAC-AAAAAAATAAAAAAAAATTT
65 AGAATCAGATATAAATATACGAAAAAAATAAAAAAAAATTT
* *
18498177 AGGTGCTGGCCTTTCAATGGCCGGCACCCAGTACAATTTT------AAATTTTTTTTTTCGTGTC
1 -GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAAAAAAATCTTTTTTTTCGTGTC
* *
18498236 AGAATCATATATAAATATACGAAAAAAATAAAAAAAATTTT
65 AGAATCAGATATAAATATACGAAAAAAATAAAAAAAAATTT
* *
18498277 GAGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATATTAAAAAAAATTCTTTTTT
1 G-GTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAAAAAAATCTTTTTT
18498334 GGTCGGTTAT
Statistics
Matches: 499, Mismatches: 47, Indels: 43
0.85 0.08 0.07
Matches are distributed among these distances:
95 16 0.03
96 68 0.14
97 5 0.01
98 3 0.01
99 32 0.06
100 55 0.11
103 6 0.01
104 131 0.26
105 50 0.10
106 94 0.19
108 7 0.01
109 32 0.06
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (105 bp):
GGTGCTGGCCTGTCAATGGCCGGCACCCAGTACAATTTTAAAAAAAAATCTTTTTTTTCGTGTCA
GAATCAGATATAAATATACGAAAAAAATAAAAAAAAATTT
Found at i:18503963 original size:11 final size:11
Alignment explanation
Indices: 18503940--18503973 Score: 59
Period size: 11 Copynumber: 3.0 Consensus size: 11
18503930 AACTAATCCT
18503940 CTCTCATATTTC
1 CTCTCA-ATTTC
18503952 CTCTCAATTTC
1 CTCTCAATTTC
18503963 CTCTCAATTTC
1 CTCTCAATTTC
18503974 TTTCCAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 16 0.73
12 6 0.27
ACGTcount: A:0.18, C:0.35, G:0.00, T:0.47
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:18503988 original size:22 final size:22
Alignment explanation
Indices: 18503963--18504013 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
18503953 TCTCAATTTC
*
18503963 CTCTCAATTTCTTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
*
18503985 CTCTCAATTTCCTTCTAAAATT
1 CTCTCAATTTCCTTCCAAAATT
18504007 CTCTCAA
1 CTCTCAA
18504014 ATTCATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.43
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATT
Found at i:18505890 original size:18 final size:18
Alignment explanation
Indices: 18505863--18505902 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
18505853 CAGGTGCGTT
*
18505863 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTA
18505881 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
18505899 TCCT
1 TCCT
18505903 TTTCTGAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.30, G:0.07, T:0.40
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:18506342 original size:25 final size:25
Alignment explanation
Indices: 18506308--18506356 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
18506298 TATTTTGAAA
18506308 TTTATTTGATGTAATAAAATAGAAG
1 TTTATTTGATGTAATAAAATAGAAG
18506333 TTTATTTGATGTAATAAAATAGAA
1 TTTATTTGATGTAATAAAATAGAA
18506357 ATTTTTGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (25 bp):
TTTATTTGATGTAATAAAATAGAAG
Found at i:18506713 original size:16 final size:16
Alignment explanation
Indices: 18506633--18506667 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
18506623 ATTAAATTGA
18506633 AAACCCTAACCTAATT
1 AAACCCTAACCTAATT
18506649 AAACCCTAACCTAATT
1 AAACCCTAACCTAATT
18506665 AAA
1 AAA
18506668 TTGAAAACCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.23
Consensus pattern (16 bp):
AAACCCTAACCTAATT
Found at i:18507002 original size:282 final size:280
Alignment explanation
Indices: 18506568--18507254 Score: 1090
Period size: 282 Copynumber: 2.5 Consensus size: 280
18506558 TTGAATTGAA
****
18506568 AAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAACCCTAAA--CT--CCTAATTAAA
1 AAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAA
*
18506629 TTGAAAACCCTAACC----T-AATTAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTA
66 TTAAAAACCCTAACCTAATTAAATTAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTA
*
18506689 AACCCTAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAGTTAAACCCTAAACCCTAACCTA
131 AACCCTAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAACCCTAAACCCTAACCTA
18506754 ATTAAATTGAAAAGAAAACCCTAACCTAATTAAATTGAAAAACCCTAACCTAATTAAACTAAAAA
196 ATTAAATTGAAAAGAAAACCCTAACCTAATTAAATTGAAAAACCCTAACCTAATTAAACTAAAAA
*
18506819 TTCTAACCTAATTAAACCCT
261 TACTAACCTAATTAAACCCT
*
18506839 AAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAA
1 AAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAA
18506904 TTAAAAACCCTAACCTAATTAAACCTTAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAAT
66 TTAAAAACCCTAACCTAATTAAA--TTAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAAT
* *
18506969 TAAACCTTAAACCCTAACCTAATTAAATTAAAAACTCTAACCTAATTAAACCCTAAACCCTAACC
129 TAAACCCTAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAACCCTAAACCCTAACC
* * *
18507034 TGATTAAATTGAAAAGAAAACCCTTACCTAATTAAATTGAAAAACCCTAACCTAATTAAATTAAA
194 TAATTAAATTGAAAAGAAAACCCTAACCTAATTAAATTGAAAAACCCTAACCTAATTAAACTAAA
18507099 AATACTAACCTAATTAAACCCT
259 AATACTAACCTAATTAAACCCT
* *
18507121 AAACCCTAACCTAATTAAATTAAAAACCATAACCTAATTAAATTGAAAACCTTAACCTAATTAAA
1 AAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAA
**
18507186 TTAAAAACCCTAACCTAATTAAAAAGAAAACCCTAACCTAATTAAACCTT--AAACCCTAACCTA
66 TTAAAAACCCTAACCTAATT--AAATTAAACCCTAACCTAATTAAA--TTGAAAACCCTAACCTA
18507249 ATTAAA
127 ATTAAA
18507255 TTAAAAACCC
Statistics
Matches: 383, Mismatches: 18, Indels: 19
0.91 0.04 0.05
Matches are distributed among these distances:
271 44 0.11
273 2 0.01
275 24 0.06
279 1 0.00
280 2 0.01
282 305 0.80
284 5 0.01
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.25
Consensus pattern (280 bp):
AAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAA
TTAAAAACCCTAACCTAATTAAATTAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTA
AACCCTAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAACCCTAAACCCTAACCTA
ATTAAATTGAAAAGAAAACCCTAACCTAATTAAATTGAAAAACCCTAACCTAATTAAACTAAAAA
TACTAACCTAATTAAACCCT
Found at i:18507268 original size:23 final size:23
Alignment explanation
Indices: 18506423--18507269 Score: 848
Period size: 23 Copynumber: 36.5 Consensus size: 23
18506413 AATTGAAAAG
* *
18506423 AAAACCCTAATCTAATTAAATTG
1 AAAACCCTAACCTAATTAAATTA
18506446 AAAACCCTAACCTAATTAAATTA
1 AAAACCCTAACCTAATTAAATTA
* * *
18506469 AAAACCTTAACCTAATTAAAATG
1 AAAACCCTAACCTAATTAAATTA
* ***
18506492 AAAACCCTAACTTAATTAAACCC
1 AAAACCCTAACCTAATTAAATTA
* *
18506515 TAAACTCTAACCTAATTAAATTGAAAA
1 AAAACCCTAACCTAATTAAATT----A
* *
18506542 GAAAACCCTAACCTTATTGAATTGA
1 -AAAACCCTAACCTAATTAAATT-A
18506567 AAAACCCTAACCTAATTAAATTA
1 AAAACCCTAACCTAATTAAATTA
***
18506590 AAAACCCTAACCTAATTAAACCC
1 AAAACCCTAACCTAATTAAATTA
* *
18506613 TAAA--CT--CCTAATTAAATTG
1 AAAACCCTAACCTAATTAAATTA
18506632 AAAACCCTAACC----T-AATT-
1 AAAACCCTAACCTAATTAAATTA
*
18506649 -AAACCCTAACCTAATTAAATTG
1 AAAACCCTAACCTAATTAAATTA
***
18506671 AAAACCCTAACCTAATTAAACCC
1 AAAACCCTAACCTAATTAAATTA
*
18506694 TAAACCCTAACCTAATTAAATTA
1 AAAACCCTAACCTAATTAAATTA
* ***
18506717 AAAACCCTAACCTAGTTAAACCC
1 AAAACCCTAACCTAATTAAATTA
*
18506740 TAAACCCTAACCTAATTAAATTGAAAA
1 AAAACCCTAACCTAATTAAATT----A
18506767 GAAAACCCTAACCTAATTAAATTGA
1 -AAAACCCTAACCTAATTAAATT-A
*
18506792 AAAACCCTAACCTAATTAAACTA
1 AAAACCCTAACCTAATTAAATTA
** ***
18506815 AAAATTCTAACCTAATTAAACCC
1 AAAACCCTAACCTAATTAAATTA
* *
18506838 TAAACCCTAACCTAATTAAATTG
1 AAAACCCTAACCTAATTAAATTA
*
18506861 AAAACCCTAACCTAATTAAATTG
1 AAAACCCTAACCTAATTAAATTA
18506884 AAAACCCTAACCTAATTAAATTA
1 AAAACCCTAACCTAATTAAATTA
18506907 AAAACCCTAACCTAATTAAACCTT-
1 AAAACCCTAACCTAATTAAA--TTA
*
18506931 -AAACCCTAACCTAATTAAATTG
1 AAAACCCTAACCTAATTAAATTA
18506953 AAAACCCTAACCTAATTAAACCTT-
1 AAAACCCTAACCTAATTAAA--TTA
18506977 -AAACCCTAACCTAATTAAATTA
1 AAAACCCTAACCTAATTAAATTA
* ***
18506999 AAAACTCTAACCTAATTAAACCC
1 AAAACCCTAACCTAATTAAATTA
* *
18507022 TAAACCCTAACCTGATTAAATTGAAAA
1 AAAACCCTAACCTAATTAAATT----A
*
18507049 GAAAACCCTTACCTAATTAAATTGA
1 -AAAACCCTAACCTAATTAAATT-A
18507074 AAAACCCTAACCTAATTAAATTA
1 AAAACCCTAACCTAATTAAATTA
** ***
18507097 AAAATACTAACCTAATTAAACCC
1 AAAACCCTAACCTAATTAAATTA
*
18507120 TAAACCCTAACCTAATTAAATTA
1 AAAACCCTAACCTAATTAAATTA
* *
18507143 AAAACCATAACCTAATTAAATTG
1 AAAACCCTAACCTAATTAAATTA
*
18507166 AAAACCTTAACCTAATTAAATTA
1 AAAACCCTAACCTAATTAAATTA
*
18507189 AAAACCCTAACCTAATTAAA-AA
1 AAAACCCTAACCTAATTAAATTA
18507211 GAAAACCCTAACCTAATTAAACCTT-
1 -AAAACCCTAACCTAATTAAA--TTA
18507236 -AAACCCTAACCTAATTAAATTA
1 AAAACCCTAACCTAATTAAATTA
18507258 AAAACCCTAACC
1 AAAACCCTAACC
18507270 CTAAACCCTT
Statistics
Matches: 687, Mismatches: 97, Indels: 80
0.80 0.11 0.09
Matches are distributed among these distances:
16 11 0.02
18 4 0.01
19 14 0.02
20 1 0.00
21 14 0.02
22 1 0.00
23 515 0.75
24 62 0.09
25 7 0.01
28 58 0.08
ACGTcount: A:0.49, C:0.24, G:0.02, T:0.25
Consensus pattern (23 bp):
AAAACCCTAACCTAATTAAATTA
Found at i:18507285 original size:282 final size:260
Alignment explanation
Indices: 18506424--18507282 Score: 746
Period size: 259 Copynumber: 3.4 Consensus size: 260
18506414 ATTGAAAAGA
* *
18506424 AAACCCTAATCTAATTAAATTGAAAACCCTAACCTAATTAAA--TTAAAAACCTTAACCTAATTA
1 AAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAACCTT--AAACCCTAACCTAATTA
* * * ** *
18506487 AAATGAAAACCCTAA--CTTAA---TTAAA-CCCT-A-AACTCTAACCTAATTAAATTGAAAAGA
64 AATTAAAAACCCTAACCCTAAACCCTTAAACCCCTAATAAAACAAACCTAATTAAATTG---A-A
* * * ** *
18506544 AAACCCTAACCTTATTGAATTGAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAA
125 AAACCCTAACCTAATTAAACT-AAAAACCCTAACCTAATTAAACCAAAAACACTAACCTAATTAA
* * *
18506609 ACCCTAAA--CT--CCTAATTAAATTGAAAACCCTAACC----T-AATT--AAACCCTAACCTAA
189 ACCCAAAACCCTAACCTAATTAAATTAAAAACCATAACCTAATTAAATTGAAAACCCTAACCTAA
18506663 TTAAATT
254 TTAAATT
**** *
18506670 GAAAACCCTAACCTAATTAAACCCTAAACCCTAACCTAATTAAA--TTAAAAACCCTAACCTAGT
1 --AAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAACCTT--AAACCCTAACCTAAT
**** ***** * *
18506733 TAAACCCTAAACCCTAA-CCT-AA---TTAAATTGAAAAGAAAACCCTAACCTAATTAAATTGAA
62 TAAATTAAAAACCCTAACCCTAAACCCTTAAACCCCTAATAAAA--CAAACCTAATTAAATTGAA
** ** *
18506793 AAACCCTAACCTAATTAAACTAAAAATTCTAACCTAATTAAACCCTAAACCCTAACCTAATTAAA
125 AAACCCTAACCTAATTAAACTAAAAACCCTAACCTAATTAAACCAAAAACACTAACCTAATTAAA
*** * * *
18506858 TTGAAAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAAT
190 CCCAAAACCCTAACCTAATTAAATTAAAAACCATAACCTAATTAAATTGAAAACCCTAACCTAAT
18506923 TAAACCTT
255 TAAA--TT
18506931 AAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAACCTTAAACCCTAACCTAATTAAA
1 AAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAACCTTAAACCCTAACCTAATTAAA
* ** * *
18506996 TTAAAAACTCTAA-CCT-AA---TTAAA-CCCT-A-AACCCTAACCTGATTAAATTGAAAAGAAA
66 TTAAAAACCCTAACCCTAAACCCTTAAACCCCTAATAAAACAAACCTAATTAAATTG---A-AAA
* * ** *
18507053 ACCCTTACCTAATTAAATTGAAAAACCCTAACCTAATTAAATTAAAAATACTAACCTAATTAAAC
127 ACCCTAACCTAATTAAACT-AAAAACCCTAACCTAATTAAACCAAAAACACTAACCTAATTAAAC
* *
18507118 CCTAAACCCTAACCTAATTAAATTAAAAACCATAACCTAATTAAATTGAAAACCTTAACCTAATT
191 CCAAAACCCTAACCTAATTAAATTAAAAACCATAACCTAATTAAATTGAAAACCCTAACCTAATT
18507183 AAATT
256 AAATT
**
18507188 AAAAACCCTAACCTAATTAAAAAGAAAACCCTAACCTAATTAAACCTTAAACCCTAACCTAATTA
1 --AAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAACCTTAAACCCTAACCTAATTA
18507253 AATTAAAAACCCTAACCCTAAACCCTTAAA
64 AATTAAAAACCCTAACCCTAAACCCTTAAA
18507283 AACCATAACC
Statistics
Matches: 510, Mismatches: 68, Indels: 50
0.81 0.11 0.08
Matches are distributed among these distances:
248 115 0.23
249 21 0.04
250 4 0.01
251 2 0.00
252 25 0.05
253 17 0.03
254 16 0.03
256 3 0.01
257 8 0.02
258 20 0.04
259 265 0.52
260 3 0.01
261 6 0.01
264 5 0.01
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.25
Consensus pattern (260 bp):
AAACCCTAACCTAATTAAATTGAAAACCCTAACCTAATTAAACCTTAAACCCTAACCTAATTAAA
TTAAAAACCCTAACCCTAAACCCTTAAACCCCTAATAAAACAAACCTAATTAAATTGAAAAACCC
TAACCTAATTAAACTAAAAACCCTAACCTAATTAAACCAAAAACACTAACCTAATTAAACCCAAA
ACCCTAACCTAATTAAATTAAAAACCATAACCTAATTAAATTGAAAACCCTAACCTAATTAAATT
Found at i:18507503 original size:115 final size:115
Alignment explanation
Indices: 18507297--18507513 Score: 348
Period size: 115 Copynumber: 1.9 Consensus size: 115
18507287 ATAACCCTTA
* *
18507297 ACATTCACATAATGTTAGATTTGGAAAAATGTTTTTTCCTAGTACTATCAATTAATAATTTTATA
1 ACATTCACATAATGTTAGATTTGGAAAAATG-TTTTTCCTAGTACTAACAAATAATAATTTTATA
*
18507362 TAATTTGATAATTTTACTAACAATTAATACAATTTATTGGATAATAATTTT
65 TAAATTGATAATTTTACTAACAATTAATACAATTTATTGGATAATAATTTT
*
18507413 ACATTCACATAATGTTAGATTTGGAAAAATG-TTTTCACTGGTACTAACAAATAATAATTTTATA
1 ACATTCACATAATGTTAGATTTGGAAAAATGTTTTTC-CTAGTACTAACAAATAATAATTTTATA
*
18507477 TAAATTGA-AATTTTTACTAACCATTAATACAATTTAT
65 TAAATTGATAA-TTTTACTAACAATTAATACAATTTAT
18507514 CAATTAATAA
Statistics
Matches: 94, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
114 7 0.07
115 56 0.60
116 31 0.33
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (115 bp):
ACATTCACATAATGTTAGATTTGGAAAAATGTTTTTCCTAGTACTAACAAATAATAATTTTATAT
AAATTGATAATTTTACTAACAATTAATACAATTTATTGGATAATAATTTT
Found at i:18511365 original size:16 final size:17
Alignment explanation
Indices: 18511327--18511374 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
18511317 AATTAAATTA
*
18511327 CTAATTACAATTTTATT
1 CTAATTACAATTCTATT
*
18511344 CT-ATTATAATTCTATT
1 CTAATTACAATTCTATT
*
18511360 -TAATTACAACTCTAT
1 CTAATTACAATTCTAT
18511375 GCAATTCCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 1 0.04
16 23 0.88
17 2 0.08
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (17 bp):
CTAATTACAATTCTATT
Found at i:18513373 original size:93 final size:99
Alignment explanation
Indices: 18513258--18513453 Score: 253
Period size: 97 Copynumber: 2.0 Consensus size: 99
18513248 ATTTTTTGAT
*
18513258 ATATAATTTTTATATGTCAAATA-TT-TTTTT-TT-CATGTACATTGTGGACATGATAAATTCTA
1 ATATAATTTTTATATGTCAAATACTTATTTTTGTTCCATCTACATTGTGGACATGATAAATTCTA
* *
18513319 ATA-TA-AAAATTAATTAATCATTTCAAATAT-A
66 ATATTATAAAATTAAATAATCATTACAAATATCA
* * ** *
18513350 ATATAATTTTTTATATGTGAAATACTTATTTTTGTTCCATCTTCATTGTGGGTATGATAGATTCT
1 ATATAA-TTTTTATATGTCAAATACTTATTTTTGTTCCATCTACATTGTGGACATGATAAATTCT
*
18513415 AATATTATAAAATTAAATAATTATTACAAATATCA
65 AATATTATAAAATTAAATAATCATTACAAATATCA
18513450 ATAT
1 ATAT
18513454 GTTTTCACCT
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
92 6 0.07
93 16 0.18
94 2 0.02
95 5 0.06
96 2 0.02
97 27 0.31
98 2 0.02
99 22 0.25
100 5 0.06
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.46
Consensus pattern (99 bp):
ATATAATTTTTATATGTCAAATACTTATTTTTGTTCCATCTACATTGTGGACATGATAAATTCTA
ATATTATAAAATTAAATAATCATTACAAATATCA
Found at i:18513470 original size:72 final size:68
Alignment explanation
Indices: 18513393--18513526 Score: 187
Period size: 72 Copynumber: 1.9 Consensus size: 68
18513383 GTTCCATCTT
*
18513393 CATTGTGGGTATGATAGATTCTAATATTATAAAATTAAATAATTATTACAAATATCAATATGTTT
1 CATTGTGGGTATGATAAATTCTAATATTA-AAAA--AAATAATTATTACAAATATCAATAT-TTT
18513458 TCACCTA
62 TCACCTA
* * * *
18513465 CATTGTGGGTATGGTAAATTCTAATATTAAAAAAAGTAATTATTTCAAATATCATTATTTTT
1 CATTGTGGGTATGATAAATTCTAATATTAAAAAAAATAATTATTACAAATATCAATATTTTT
18513527 ATATGTAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
68 4 0.07
69 22 0.39
71 4 0.07
72 27 0.47
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (68 bp):
CATTGTGGGTATGATAAATTCTAATATTAAAAAAAATAATTATTACAAATATCAATATTTTTCAC
CTA
Found at i:18514033 original size:20 final size:21
Alignment explanation
Indices: 18513977--18514037 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
18513967 AACATGTTTT
*
18513977 TTAATTAAAAACTTCAAAATAA
1 TTAATTAAAAA-TTAAAAATAA
* *
18513999 TATACTTATAAATTAAAAAT-A
1 T-TAATTAAAAATTAAAAATAA
18514020 TTAATTAAAAATTAAAAA
1 TTAATTAAAAATTAAAAA
18514038 AAAAACAAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 15 0.45
21 2 0.06
22 8 0.24
23 8 0.24
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (21 bp):
TTAATTAAAAATTAAAAATAA
Found at i:18516183 original size:10 final size:10
Alignment explanation
Indices: 18516151--18516214 Score: 62
Period size: 10 Copynumber: 6.6 Consensus size: 10
18516141 ATAGCAGTAA
18516151 TTTTAA-AAT
1 TTTTAATAAT
*
18516160 TTTT-ATAAG
1 TTTTAATAAT
*
18516169 ATTTAATAAT
1 TTTTAATAAT
18516179 TTTT-ATAAT
1 TTTTAATAAT
18516188 ATTTTAATAAT
1 -TTTTAATAAT
* *
18516199 TTCTAATAGT
1 TTTTAATAAT
18516209 TTTTAA
1 TTTTAA
18516215 AAAATTAATA
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
8 1 0.02
9 14 0.32
10 24 0.55
11 5 0.11
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:18516193 original size:20 final size:20
Alignment explanation
Indices: 18516150--18516200 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
18516140 AATAGCAGTA
18516150 ATTTTAA-AATTTTTATAAG
1 ATTTTAATAATTTTTATAAG
*
18516169 A-TTTAATAATTTTTATAAT
1 ATTTTAATAATTTTTATAAG
18516188 ATTTTAATAATTT
1 ATTTTAATAATTT
18516201 CTAATAGTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 5 0.17
19 13 0.45
20 11 0.38
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (20 bp):
ATTTTAATAATTTTTATAAG
Found at i:18516214 original size:20 final size:20
Alignment explanation
Indices: 18516150--18516206 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
18516140 AATAGCAGTA
* *
18516150 ATTTTAA-AATTTTTATAAG
1 ATTTTAATAATTTTAATAAT
*
18516169 A-TTTAATAATTTTTATAAT
1 ATTTTAATAATTTTAATAAT
18516188 ATTTTAATAATTTCTAATA
1 ATTTTAATAATTT-TAATA
18516207 GTTTTTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.15
19 13 0.39
20 11 0.33
21 4 0.12
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (20 bp):
ATTTTAATAATTTTAATAAT
Found at i:18516563 original size:19 final size:19
Alignment explanation
Indices: 18516514--18516576 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
18516504 TATTAATAAG
*
18516514 TTTTTATAATTTTTATAAAT
1 TTTTTAT-ATTTCTATAAAT
* *
18516534 TTATATATATTTCTATAACT
1 TT-TTTATATTTCTATAAAT
18516554 TTTTTATATTT-T-TAAAT
1 TTTTTATATTTCTATAAAT
18516571 TGTTTT
1 T-TTTT
18516577 CTATAATTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
17 5 0.14
18 5 0.14
19 8 0.22
20 14 0.39
21 4 0.11
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTTATATTTCTATAAAT
Found at i:18516581 original size:20 final size:21
Alignment explanation
Indices: 18516553--18516592 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
18516543 TTTCTATAAC
* *
18516553 TTTTTTAT-ATTTTTAAATTG
1 TTTTCTATAATTTCTAAATTG
18516573 TTTTCTATAATTTCTAAATT
1 TTTTCTATAATTTCTAAATT
18516593 TATATATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.65
Consensus pattern (21 bp):
TTTTCTATAATTTCTAAATTG
Found at i:18516590 original size:21 final size:20
Alignment explanation
Indices: 18516539--18516592 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
18516529 TAAATTTATA
*
18516539 TATATTTCTATAACT-TTTT-
1 TATATTTCTA-AATTGTTTTC
*
18516558 TATATTTTTAAATTGTTTTC
1 TATATTTCTAAATTGTTTTC
18516578 TATAATTTCTAAATT
1 TAT-ATTTCTAAATT
18516593 TATATATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 3 0.10
19 13 0.45
20 3 0.10
21 10 0.34
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (20 bp):
TATATTTCTAAATTGTTTTC
Found at i:18516656 original size:27 final size:27
Alignment explanation
Indices: 18516583--18516677 Score: 97
Period size: 27 Copynumber: 3.4 Consensus size: 27
18516573 TTTTCTATAA
*
18516583 TTTCTAA-ATTTATATATTA-TTATATT
1 TTTCTAATATTTA-ATAATATTTATATT
*
18516609 TTTCATAACATATTAATAATATTCTATATT
1 TTTC-TAATAT-TTAATAATATT-TATATT
18516639 TTT-TAATATTTAATAATATTTATAGTT
1 TTTCTAATATTTAATAATATTTATA-TT
*
18516666 TTTCTATTATTT
1 TTTCTAATATTT
18516678 TTATATTTTC
Statistics
Matches: 59, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
26 8 0.14
27 19 0.32
28 19 0.32
29 4 0.07
30 9 0.15
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (27 bp):
TTTCTAATATTTAATAATATTTATATT
Found at i:18517360 original size:20 final size:20
Alignment explanation
Indices: 18517311--18517362 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
18517301 GAATGTAGAC
**
18517311 TTTA-AAATTATAATTATTA
1 TTTATAAATTATAATTAAAA
*
18517330 TATTAT-GATTATAATTAAAA
1 T-TTATAAATTATAATTAAAA
18517350 TTTATAAATTATA
1 TTTATAAATTATA
18517363 GTGAATGTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
TTTATAAATTATAATTAAAA
Found at i:18520303 original size:59 final size:59
Alignment explanation
Indices: 18520238--18520425 Score: 150
Period size: 59 Copynumber: 3.2 Consensus size: 59
18520228 ATTTTATTAA
18520238 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
* * ** * * * ** * * * *
18520297 ATCATATATTATGATTTTAGTA-AATTCATA-TAAGAATATTGATTATTAGAATTTTATTA-A
1 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCA-AATTA-TATTTTA-TAGT
* * * *
18520357 ATTATATATTTTAATTAAAATATATTTAATAATT-ATTATTTTAATTTATATTTTACAGT
1 ATCATATATTTTAATTAAAATATATTTAAT-ATTAATTATTTCAAATTATATTTTATAGT
18520416 ATCATATATT
1 ATCATATATT
18520426 ATGATTTGAG
Statistics
Matches: 91, Mismatches: 30, Indels: 16
0.66 0.22 0.12
Matches are distributed among these distances:
57 5 0.05
58 10 0.11
59 36 0.40
60 25 0.27
61 10 0.11
62 4 0.04
63 1 0.01
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (59 bp):
ATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGT
Found at i:18520352 original size:119 final size:120
Alignment explanation
Indices: 18520227--18520515 Score: 492
Period size: 119 Copynumber: 2.4 Consensus size: 120
18520217 AATTATTTTA
*
18520227 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
* * *
18520292 ATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
18520346 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATT-ATTATTTTAATTTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAAT-ATTAATTATTTCAAATTATATTT
18520410 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
18520466 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTAT
18520516 GTTTAAATAT
Statistics
Matches: 160, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
119 109 0.68
120 51 0.32
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:18520373 original size:18 final size:18
Alignment explanation
Indices: 18520347--18520402 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 18
18520337 GATTATTAGA
18520347 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
18520364 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
18520380 A-TTTAA-T-AATTAT-T
1 ATTTTAATTAAATTATAT
18520394 ATTTTAATT
1 ATTTTAATT
18520403 TATATTTTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
13 2 0.06
14 3 0.09
15 12 0.35
16 6 0.18
17 5 0.15
18 6 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:18520483 original size:59 final size:58
Alignment explanation
Indices: 18520301--18520483 Score: 146
Period size: 56 Copynumber: 3.1 Consensus size: 58
18520291 TATAGTATCA
*
18520301 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
* * * * * *
18520359 TATA-TAT--TTTAATTAAAATAT-ATTTAATAATTATTATT-TTAATTTATATTTTA-CAGTAT
1 TATATTATGATTTAAGT-AAAT-TCATATAAGAA-TATTATTATTAA--GA-ATTTTATTA-AAT
*
18520418 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
18520479 TATAT
1 TATAT
18520484 ATTTTAATTA
Statistics
Matches: 94, Mismatches: 14, Indels: 33
0.67 0.10 0.23
Matches are distributed among these distances:
55 7 0.07
56 15 0.16
57 8 0.09
58 6 0.06
59 13 0.14
61 12 0.13
62 10 0.11
63 14 0.15
64 9 0.10
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (58 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTATTATTAAGAATTTTATTAAAT
Found at i:18520495 original size:18 final size:17
Alignment explanation
Indices: 18520467--18520501 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
18520457 ATTATTAAGA
*
18520467 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
18520484 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
18520502 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:18520609 original size:147 final size:149
Alignment explanation
Indices: 18520455--18520729 Score: 500
Period size: 147 Copynumber: 1.9 Consensus size: 149
18520445 ATAAGAATAT
*
18520455 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
18520520 AAATATGAGTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGAGTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
18520583 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
18520602 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
* *
18520667 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGAGTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
18520730 CAATAATCAT
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
147 90 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGAGTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:18520642 original size:18 final size:17
Alignment explanation
Indices: 18520614--18520648 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
18520604 ATTATTAAGA
*
18520614 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
18520631 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
18520649 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:18520900 original size:45 final size:44
Alignment explanation
Indices: 18520810--18520904 Score: 118
Period size: 45 Copynumber: 2.1 Consensus size: 44
18520800 TTACACCTCT
* * * *
18520810 ATTACATTCAACCAAACACAGTTTTACTATTACGCCTTTATTCC
1 ATTACATTCAACCAAACACAGATTTACTATTACACATCTATTCC
** *
18520854 ATTACATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCC
1 ATTACATTCAACCAAACA-CAGATTTACTATTACACATCTATTCC
18520899 ATTACA
1 ATTACA
18520905 CCTCTAATCC
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 18 0.42
45 25 0.58
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.36
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAGATTTACTATTACACATCTATTCC
Found at i:18520904 original size:16 final size:16
Alignment explanation
Indices: 18520885--18520936 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
18520875 GATTTGCTAT
* * *
18520885 TACACATCTATTCCAT
1 TACACCTCTAATCCAA
18520901 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
18520917 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
18520933 TACA
1 TACA
18520937 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:18527403 original size:73 final size:73
Alignment explanation
Indices: 18527284--18527421 Score: 213
Period size: 73 Copynumber: 1.9 Consensus size: 73
18527274 ATGGAATGTC
*
18527284 ATCAACTGGCTCGCTAGAGTGACACCGTGACGACGGTCTATCGACTCTATAGAGCGACACCGTGA
1 ATCAACTGGCTCGCTAGAGTGACACCGTGACGACGGTCCATCGACTCTATAGAGCGACACCGTGA
18527349 CAGTGATT
66 CAGTGATT
** * * * *
18527357 ATCAACTGGCTCGCTAGAGTGACATTGTGACGAGGGTCCCTCGACTCTATGGAGCGATACCGTGA
1 ATCAACTGGCTCGCTAGAGTGACACCGTGACGACGGTCCATCGACTCTATAGAGCGACACCGTGA
18527422 TGGCAATAAG
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
73 58 1.00
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (73 bp):
ATCAACTGGCTCGCTAGAGTGACACCGTGACGACGGTCCATCGACTCTATAGAGCGACACCGTGA
CAGTGATT
Found at i:18527618 original size:68 final size:68
Alignment explanation
Indices: 18527497--18527647 Score: 189
Period size: 68 Copynumber: 2.2 Consensus size: 68
18527487 AAAAGAGGTT
* *
18527497 ATATTGTGTAAGACCATAACTCAACTATGGCAACAAAGGGAGCCCGTCAGGACATTAAATATGGG
1 ATATTGTGTAAGACCATAACTCAACTATGGCAACAAAGAGAGCCCGTCAGGACATTAAACATGGG
*
18527562 TTC
66 ATC
* * * * *
18527565 CTATTGTGTAAGACCATAGCTCGACTGTGGCAACAAAGAGAGTCCAC-T-GGGACATTAAACATG
1 ATATTGTGTAAGACCATAACTCAACTATGGCAACAAAGAGAG-CC-CGTCAGGACATTAAACATG
18527628 GGATC
64 GGATC
*
18527633 ATACTGTGTAAGACC
1 ATATTGTGTAAGACC
18527648 TTTGTAATAG
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
68 67 0.94
69 3 0.04
70 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (68 bp):
ATATTGTGTAAGACCATAACTCAACTATGGCAACAAAGAGAGCCCGTCAGGACATTAAACATGGG
ATC
Found at i:18529745 original size:52 final size:46
Alignment explanation
Indices: 18529726--18529928 Score: 280
Period size: 46 Copynumber: 4.3 Consensus size: 46
18529716 TGACAAGTGG
* *
18529726 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
18529772 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* *
18529818 AAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
** **
18529870 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAAAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
18529916 AAAGTGATAAGTG
1 AAAGTGATAAGTG
18529929 GCTACACTTA
Statistics
Matches: 143, Mismatches: 8, Indels: 12
0.88 0.05 0.07
Matches are distributed among these distances:
46 99 0.69
52 44 0.31
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.28
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
Found at i:18529780 original size:98 final size:98
Alignment explanation
Indices: 18529660--18529911 Score: 450
Period size: 98 Copynumber: 2.6 Consensus size: 98
18529650 TTTGAGTACT
*
18529660 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
18529725 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
**
18529758 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
18529823 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
*
18529856 TCTGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAG
18529912 AAACAAAGTG
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 146 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:18529936 original size:37 final size:37
Alignment explanation
Indices: 18529892--18530000 Score: 186
Period size: 37 Copynumber: 3.0 Consensus size: 37
18529882 GATAGCTTTA
18529892 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
18529929 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
18529966 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
18530001 ATCATACGTA
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
35 12 0.17
36 4 0.06
37 54 0.77
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:18532610 original size:15 final size:15
Alignment explanation
Indices: 18532592--18532643 Score: 59
Period size: 15 Copynumber: 3.2 Consensus size: 15
18532582 ATTCAATATT
18532592 AATATATTAATAATA
1 AATATATTAATAATA
*
18532607 AATATTTATTATAATTATA
1 AATA--TA-T-TAATAATA
18532626 AATATATTAATAATA
1 AATATATTAATAATA
18532641 AAT
1 AAT
18532644 GTTTTGTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
15 14 0.45
16 1 0.03
17 4 0.13
18 1 0.03
19 11 0.35
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AATATATTAATAATA
Found at i:18533710 original size:22 final size:22
Alignment explanation
Indices: 18533684--18533727 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
18533674 ATCACTACCT
18533684 TAATTGCATGA-TTTAATTATTA
1 TAATT-CATGATTTTAATTATTA
*
18533706 TAATTCATTATTTTAATTATTA
1 TAATTCATGATTTTAATTATTA
18533728 ATTTAGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.55
Consensus pattern (22 bp):
TAATTCATGATTTTAATTATTA
Found at i:18537953 original size:61 final size:61
Alignment explanation
Indices: 18537792--18537968 Score: 157
Period size: 61 Copynumber: 2.9 Consensus size: 61
18537782 GAATTTTTGT
* * * *
18537792 TATAAGAATATTGATTATTAAGAATTTTATTAAATTAGATATTTTAATTAAAATATATTTA
1 TATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTATAATTAAAATAAATTCA
* * * * * ** *
18537853 -ATAATAATAATG-TTAAATT-A-TATTTTA-TAGTATCATATATATTATGATTTTAGTAAATTC
1 TATAAGAATATTGATT--ATTAAGAATTTTATTA-AAT--TATATATTATAATTAAAATAAATTC
18537913 A
61 A
*
18537914 TATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATA
1 TATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTATAATTAAAATA
18537969 TATTTAATAA
Statistics
Matches: 85, Mismatches: 21, Indels: 20
0.67 0.17 0.16
Matches are distributed among these distances:
58 2 0.02
59 10 0.12
60 11 0.13
61 39 0.46
62 11 0.13
63 10 0.12
64 2 0.02
ACGTcount: A:0.45, C:0.01, G:0.06, T:0.47
Consensus pattern (61 bp):
TATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTATAATTAAAATAAATTCA
Found at i:18537965 original size:18 final size:17
Alignment explanation
Indices: 18537937--18537971 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
18537927 ATTATTAAGA
*
18537937 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
18537954 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
18537972 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:18539472 original size:31 final size:31
Alignment explanation
Indices: 18539413--18539474 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
18539403 TCATGTTACG
*
18539413 TTTTAGTCACTTACGTTATCGTGTTGTAACA
1 TTTTAGTCACTTACGTTAACGTGTTGTAACA
18539444 TTTTAGTCACTTAGCCGTTAACG-G-TGTAACA
1 TTTTAGTCACTTA--CGTTAACGTGTTGTAACA
18539475 ATAAGCTGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 20 0.71
32 1 0.04
33 7 0.25
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (31 bp):
TTTTAGTCACTTACGTTAACGTGTTGTAACA
Found at i:18548248 original size:29 final size:28
Alignment explanation
Indices: 18548216--18548292 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 28
18548206 AAAAATAAAA
**
18548216 ATTTACCAAAATACTACAAGTTTTTTTTT
1 ATTTACCAAAATA-TACAAACTTTTTTTT
* *
18548245 ATTTATCAAAATATATAAACTTTTTTTT
1 ATTTACCAAAATATACAAACTTTTTTTT
18548273 ATTTACCAAAATATATCAAA
1 ATTTACCAAAATATA-CAAA
18548293 AAAAACTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 26 0.63
29 15 0.37
ACGTcount: A:0.42, C:0.12, G:0.01, T:0.45
Consensus pattern (28 bp):
ATTTACCAAAATATACAAACTTTTTTTT
Found at i:18548398 original size:27 final size:27
Alignment explanation
Indices: 18548368--18548434 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
18548358 CGCCAATGGT
18548368 ATTGGCGGCACCAAAGGTGCCAAAACC
1 ATTGGCGGCACCAAAGGTGCCAAAACC
* **
18548395 ATTGGCGGCACCAATGGTGCCAATGCC
1 ATTGGCGGCACCAAAGGTGCCAAAACC
18548422 ATTGGCGGCACCA
1 ATTGGCGGCACCA
18548435 CTCGTATTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.27, C:0.30, G:0.28, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAACC
Found at i:18548697 original size:3 final size:3
Alignment explanation
Indices: 18548684--18548724 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
18548674 ATTATTATTA
*
18548684 TTG TTG CTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
18548725 AGTATGAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.00, C:0.02, G:0.32, T:0.66
Consensus pattern (3 bp):
TTG
Found at i:18555338 original size:21 final size:20
Alignment explanation
Indices: 18555284--18555414 Score: 115
Period size: 21 Copynumber: 6.3 Consensus size: 20
18555274 AATAAAATTA
* *
18555284 CCTTTTTTCCCTT-TTTTTT
1 CCTTTTTTCTCTTCTTCTTT
*
18555303 CCTTTCTTCCCTCTTCTTCTTCT
1 CCTTT-TT-TCTCTTCTTCTT-T
* *
18555326 TCTTTTTTCTCTTCTCCTTT
1 CCTTTTTTCTCTTCTTCTTT
18555346 CCCTTTCTTTC-CTTCCTTCTTT
1 -CCTTT-TTTCTCTT-CTTCTTT
18555368 -CTTTTTTCTTCTTCTTTCTTT
1 CCTTTTTTC-TCTTC-TTCTTT
*
18555389 CCTTTTTTCTCTTCTCCTTT
1 CCTTTTTTCTCTTCTTCTTT
18555409 CCTTTT
1 CCTTTT
18555415 CTTTCTTTCC
Statistics
Matches: 92, Mismatches: 9, Indels: 21
0.75 0.07 0.17
Matches are distributed among these distances:
19 9 0.10
20 19 0.21
21 35 0.38
22 24 0.26
23 5 0.05
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (20 bp):
CCTTTTTTCTCTTCTTCTTT
Found at i:18555367 original size:22 final size:22
Alignment explanation
Indices: 18555342--18555450 Score: 67
Period size: 21 Copynumber: 5.3 Consensus size: 22
18555332 TTCTCTTCTC
18555342 CTTTCCCTTTCTTTCCTTCCTT
1 CTTTCCCTTTCTTTCCTTCCTT
*
18555364 CTTT--CTTT-TTTCTTCTTCTTT
1 CTTTCCCTTTCTTTC--CTTCCTT
*
18555385 CTTT-CCTTT-TTTCTCTT-CTC
1 CTTTCCCTTTCTTTC-CTTCCTT
* *
18555405 CTTTCCTTTTCTTTCTTTCC-T
1 CTTTCCCTTTCTTTCCTTCCTT
* *
18555426 C---CCCTTTCTTTCTTTCTTT
1 CTTTCCCTTTCTTTCCTTCCTT
18555445 CTTTCC
1 CTTTCC
18555451 TCTCCTTTCT
Statistics
Matches: 69, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
18 14 0.20
19 6 0.09
20 9 0.13
21 21 0.30
22 19 0.28
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (22 bp):
CTTTCCCTTTCTTTCCTTCCTT
Found at i:18555369 original size:4 final size:4
Alignment explanation
Indices: 18555348--18555472 Score: 89
Period size: 4 Copynumber: 30.5 Consensus size: 4
18555338 TCTCCTTTCC
* *
18555348 CTTT CTTT CCTT CCTT CTTT CTTT -TTT C-TT C-TT CTTT CTTT CCTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT -CTTT
* **
18555394 -TTT CTCTT C-TC CTTT CCTTTT CTTT CTTT CCTCCC CTTT CTTT CTTT
1 CTTT CT-TT CTTT CTTT -C-TTT CTTT CTTT -CT-TT CTTT CTTT CTTT
*
18555441 CTTT CTTT CCTCTC CTTT CTTT CTTT CTTT CT
1 CTTT CTTT -CT-TT CTTT CTTT CTTT CTTT CT
18555473 CTCCTTCTGC
Statistics
Matches: 99, Mismatches: 10, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
3 14 0.14
4 64 0.65
5 17 0.17
6 4 0.04
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (4 bp):
CTTT
Found at i:18555369 original size:34 final size:34
Alignment explanation
Indices: 18555309--18555425 Score: 111
Period size: 34 Copynumber: 3.6 Consensus size: 34
18555299 TTTTCCTTTC
*
18555309 TTCCCTCTTCTTCTTCTT-CTTTTTTCTCTTCTCCT
1 TTCCCT-TTCTT-TCCTTCCTTTTTTCTCTTCTCCT
* * *
18555344 TTCCCTTTCTTTCCTTCCTTCTTTCT-TTTTTC-
1 TTCCCTTTCTTTCCTTCCTTTTTTCTCTTCTCCT
*
18555376 TT--C-TTCTTTCTTTCCTTTTTTCTCTTCTCCT
1 TTCCCTTTCTTTCCTTCCTTTTTTCTCTTCTCCT
* *
18555407 TTCCTTTTCTTTCTTTCCT
1 TTCCCTTTCTTTCCTTCCT
18555426 CCCCTTTCTT
Statistics
Matches: 67, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
29 18 0.27
30 5 0.07
31 2 0.03
32 2 0.03
33 8 0.12
34 26 0.39
35 6 0.09
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (34 bp):
TTCCCTTTCTTTCCTTCCTTTTTTCTCTTCTCCT
Found at i:18555379 original size:26 final size:26
Alignment explanation
Indices: 18555348--18555477 Score: 131
Period size: 26 Copynumber: 5.4 Consensus size: 26
18555338 TCTCCTTTCC
18555348 CTTTCTTTCCT-TCC-TTCTTTCTTT
1 CTTTCTTTCCTCTCCTTTCTTTCTTT
18555372 -TTTC-TT-CT-T-CTTTCTTTCCTTT
1 CTTTCTTTCCTCTCCTTTCTTT-CTTT
* *
18555394 -TTTC--TCTTCTCCTTTC-CT-TTT
1 CTTTCTTTCCTCTCCTTTCTTTCTTT
*
18555415 CTTTCTTTCCTCCCCTTTCTTTCTTT
1 CTTTCTTTCCTCTCCTTTCTTTCTTT
18555441 CTTTCTTTCCTCTCCTTTCTTTCTTT
1 CTTTCTTTCCTCTCCTTTCTTTCTTT
*
18555467 CTTTCTCTCCT
1 CTTTCTTTCCT
18555478 TCTGCCCCCA
Statistics
Matches: 89, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
20 1 0.01
21 13 0.15
22 15 0.17
23 6 0.07
24 15 0.17
25 1 0.01
26 38 0.43
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (26 bp):
CTTTCTTTCCTCTCCTTTCTTTCTTT
Found at i:18555392 original size:48 final size:47
Alignment explanation
Indices: 18555348--18555472 Score: 141
Period size: 48 Copynumber: 2.6 Consensus size: 47
18555338 TCTCCTTTCC
18555348 CTTTCTTTCCTTCCTTCTTTCTTT-TTTCTTCTTCTTTCTTTCCTTT
1 CTTTCTTTCCTTCCTTCTTTCTTTCTTTCTTCTTCTTTCTTTCCTTT
* * **
18555394 TTTCTCTTCTCCTTTCC-T-TTTCTTTCTTTCCTCCCCTTTCTTT-CTTT
1 CTT-TCTT-TCC-TTCCTTCTTTCTTTCTTTCTTCTTCTTTCTTTCCTTT
18555441 CTTTCTTTCCTCTCCTTTCTTTCTTTCTTTCT
1 CTTTCTTTCCT-TCC-TTCTTTCTTTCTTTCT
18555473 CTCCTTCTGC
Statistics
Matches: 65, Mismatches: 6, Indels: 14
0.76 0.07 0.16
Matches are distributed among these distances:
44 1 0.02
45 6 0.09
46 6 0.09
47 18 0.28
48 30 0.46
49 4 0.06
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (47 bp):
CTTTCTTTCCTTCCTTCTTTCTTTCTTTCTTCTTCTTTCTTTCCTTT
Found at i:18555394 original size:63 final size:65
Alignment explanation
Indices: 18555314--18555468 Score: 191
Period size: 63 Copynumber: 2.5 Consensus size: 65
18555304 CTTTCTTCCC
*
18555314 TCTTCTTC-TTC-TT-CTTTTTTCTCTTCTCCTTTCCCTTTCTTTCCTTCCT-TCTTTCTTT-TT
1 TCTTCTTCTTTCTTTCCTTTTTTCTCTTCTCCTTTCCCTTTCTTTCCTTCCTCCCTTTCTTTCTT
* *
18555374 TCTTCTTCTTTCTTTCCTTTTTTCTCTTCTCCTTTCCTTTTCTTTCTTTCCTCCCCTTTCTTTCT
1 TCTTCTTCTTTCTTTCCTTTTTTCTCTTCTCCTTTCCCTTTCTTTCCTTCCT-CCCTTTCTTTCT
18555439 T
65 T
*
18555440 TC-T-TTCTTTCCTCTCCTTTCTTTCT-TTCT
1 TCTTCTTCTTT-CTTTCCTTT-TTTCTCTTCT
18555469 TTCTCTCCTT
Statistics
Matches: 83, Mismatches: 4, Indels: 11
0.85 0.04 0.11
Matches are distributed among these distances:
60 8 0.10
61 3 0.04
62 2 0.02
63 34 0.41
64 6 0.07
65 21 0.25
66 9 0.11
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (65 bp):
TCTTCTTCTTTCTTTCCTTTTTTCTCTTCTCCTTTCCCTTTCTTTCCTTCCTCCCTTTCTTTCTT
Found at i:18555458 original size:22 final size:22
Alignment explanation
Indices: 18555348--18555478 Score: 119
Period size: 22 Copynumber: 5.8 Consensus size: 22
18555338 TCTCCTTTCC
18555348 CTTTCTTTCCT-TCC-TTCTTT
1 CTTTCTTTCCTCTCCTTTCTTT
* *
18555368 CTTT-TTTCTTCTTCTTTCTTT
1 CTTTCTTTCCTCTCCTTTCTTT
18555389 CCTTT-TTTCTCTTCTCCTTTCCTTTT
1 -CTTTCTTTC-C-TCTCCTTT-C-TTT
*
18555415 CTTTCTTTCCTCCCCTTTCTTTCTTT
1 CTTTCTTTCCT---C-TCCTTTCTTT
18555441 CTTTCTTTCCTCTCCTTTCTTT
1 CTTTCTTTCCTCTCCTTTCTTT
18555463 CTTTCTTT-CTCTCCTT
1 CTTTCTTTCCTCTCCTT
18555479 CTGCCCCCAC
Statistics
Matches: 93, Mismatches: 6, Indels: 23
0.76 0.05 0.19
Matches are distributed among these distances:
19 5 0.05
20 6 0.06
21 14 0.15
22 25 0.27
23 1 0.01
24 8 0.09
25 6 0.06
26 21 0.23
27 2 0.02
28 5 0.05
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (22 bp):
CTTTCTTTCCTCTCCTTTCTTT
Found at i:18555546 original size:27 final size:27
Alignment explanation
Indices: 18555514--18555580 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
18555504 TAACACCAAC
18555514 TGGTGCCGCCAATGGCATTGGCACCAT
1 TGGTGCCGCCAATGGCATTGGCACCAT
** *
18555541 TGGTGCCGCCAATGGTTTTGGCACCTT
1 TGGTGCCGCCAATGGCATTGGCACCAT
18555568 TGGTGCCGCCAAT
1 TGGTGCCGCCAAT
18555581 ACCATTAGCG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.15, C:0.28, G:0.30, T:0.27
Consensus pattern (27 bp):
TGGTGCCGCCAATGGCATTGGCACCAT
Found at i:18555651 original size:17 final size:18
Alignment explanation
Indices: 18555631--18555668 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
18555621 TTTTTTGTCA
*
18555631 GGTTTTTTTTTA-ATTTT
1 GGTTTTTTTATATATTTT
18555648 GGTTTTTTTATATATTTT
1 GGTTTTTTTATATATTTT
18555666 GGT
1 GGT
18555669 AAATAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.13, C:0.00, G:0.16, T:0.71
Consensus pattern (18 bp):
GGTTTTTTTATATATTTT
Found at i:18555685 original size:28 final size:28
Alignment explanation
Indices: 18555654--18555728 Score: 107
Period size: 28 Copynumber: 2.7 Consensus size: 28
18555644 TTTTGGTTTT
*
18555654 TTTATATATTTTGGTAAATAAAAAAAAG
1 TTTATATATTTTGGTAAATAAAAAAAAC
*
18555682 TTTATATATTTTAGTAAATAAAAAAAAC
1 TTTATATATTTTGGTAAATAAAAAAAAC
*
18555710 TTGTA-GTATTTTGGTAAAT
1 TT-TATATATTTTGGTAAAT
18555729 TTTATTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 40 0.95
29 2 0.05
ACGTcount: A:0.45, C:0.01, G:0.11, T:0.43
Consensus pattern (28 bp):
TTTATATATTTTGGTAAATAAAAAAAAC
Found at i:18559253 original size:19 final size:19
Alignment explanation
Indices: 18559229--18559282 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
18559219 AATCTTCAAG
18559229 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
18559248 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
18559267 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
18559283 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:18559258 original size:36 final size:36
Alignment explanation
Indices: 18559218--18559289 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 36
18559208 TATGGAAATA
18559218 TAATCTT-CA-AGGATATGCAATCTTAGATATGATATG
1 TAATCTTACATAGGATATGCAATCTTAGA-A-GATATG
* *
18559254 TAATCTTAGATATGATATGCAATCTTAGAAGATATG
1 TAATCTTACATAGGATATGCAATCTTAGAAGATATG
18559290 ATTTTGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 13 0.41
37 2 0.06
38 17 0.53
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (36 bp):
TAATCTTACATAGGATATGCAATCTTAGAAGATATG
Found at i:18559273 original size:38 final size:40
Alignment explanation
Indices: 18559229--18559305 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
18559219 AATCTTCAAG
18559229 GATATGCAATCTT-AGATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
*
18559267 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT--AAGATATGATTATGTAATCTTAGA
18559306 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 13 0.38
41 8 0.24
42 13 0.38
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (40 bp):
GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
Found at i:18559775 original size:73 final size:73
Alignment explanation
Indices: 18559698--18559929 Score: 220
Period size: 77 Copynumber: 3.1 Consensus size: 73
18559688 TTATCCATCG
18559698 ACTTTCTTATTTACATATTGTTCATTCATTTAACCATTCTTATCATTCTTTTATTTTCTTCCATT
1 ACTTTCTTATTTACATATTGTTCATTCATTTAACCATTCTTATCATTCTTTTATTTTCTTCCATT
18559763 AATTATAT
66 AATTATAT
* ** * * * * *
18559771 ACTTTAAACCTTTTTTATTTATCCAT-TTAATT-GTTTAATCA-T-TAATTATTCTTTTACTTTT
1 ACTTT----CTTATTTACATAT---TGTTCATTCATTTAACCATTCTTATCATTCTTTTA-TTTT
* ** *
18559832 ATTCGTTTATTTATCCAT
58 CTTCCATTAATTAT--AT
18559850 CAACTTTCTTATTTACATATTGTTCATTCATTTAACCATTCTTATCATTCTTTTATTTTCTTCCA
1 --ACTTTCTTATTTACATATTGTTCATTCATTTAACCATTCTTATCATTCTTTTATTTTCTTCCA
18559915 TTAATTATAT
64 TTAATTATAT
18559925 ACTTT
1 ACTTT
18559930 ATTTGTTTTT
Statistics
Matches: 119, Mismatches: 24, Indels: 32
0.68 0.14 0.18
Matches are distributed among these distances:
73 10 0.08
74 1 0.01
75 7 0.06
76 19 0.16
77 50 0.42
78 19 0.16
79 7 0.06
80 1 0.01
81 5 0.04
ACGTcount: A:0.25, C:0.17, G:0.02, T:0.56
Consensus pattern (73 bp):
ACTTTCTTATTTACATATTGTTCATTCATTTAACCATTCTTATCATTCTTTTATTTTCTTCCATT
AATTATAT
Found at i:18559939 original size:154 final size:154
Alignment explanation
Indices: 18559623--18559930 Score: 589
Period size: 154 Copynumber: 2.0 Consensus size: 154
18559613 GCGTTTTTTT
*
18559623 AACCTTTTTTATTTATTCATTTAATTGTTTAATCATTAATTATTCTTTTACTTTTATTCGTGTAT
1 AACCTTTTTTATTTATCCATTTAATTGTTTAATCATTAATTATTCTTTTACTTTTATTCGTGTAT
*
18559688 TTATCCATCGACTTTCTTATTTACATATTGTTCATTCATTTAACCATTCTTATCATTCTTTTATT
66 TTATCCATCAACTTTCTTATTTACATATTGTTCATTCATTTAACCATTCTTATCATTCTTTTATT
18559753 TTCTTCCATTAATTATATACTTTA
131 TTCTTCCATTAATTATATACTTTA
*
18559777 AACCTTTTTTATTTATCCATTTAATTGTTTAATCATTAATTATTCTTTTACTTTTATTCGTTTAT
1 AACCTTTTTTATTTATCCATTTAATTGTTTAATCATTAATTATTCTTTTACTTTTATTCGTGTAT
18559842 TTATCCATCAACTTTCTTATTTACATATTGTTCATTCATTTAACCATTCTTATCATTCTTTTATT
66 TTATCCATCAACTTTCTTATTTACATATTGTTCATTCATTTAACCATTCTTATCATTCTTTTATT
18559907 TTCTTCCATTAATTATATACTTTA
131 TTCTTCCATTAATTATATACTTTA
18559931 TTTGTTTTTA
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
154 151 1.00
ACGTcount: A:0.25, C:0.16, G:0.03, T:0.56
Consensus pattern (154 bp):
AACCTTTTTTATTTATCCATTTAATTGTTTAATCATTAATTATTCTTTTACTTTTATTCGTGTAT
TTATCCATCAACTTTCTTATTTACATATTGTTCATTCATTTAACCATTCTTATCATTCTTTTATT
TTCTTCCATTAATTATATACTTTA
Found at i:18565403 original size:12 final size:12
Alignment explanation
Indices: 18565386--18565413 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
18565376 CAGAAGAAAG
18565386 TAGATGTCAAAC
1 TAGATGTCAAAC
18565398 TAGATGTCAAAC
1 TAGATGTCAAAC
18565410 TAGA
1 TAGA
18565414 AAGGACCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.25
Consensus pattern (12 bp):
TAGATGTCAAAC
Found at i:18565550 original size:17 final size:17
Alignment explanation
Indices: 18565530--18565578 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
18565520 TCACTTGAAT
**
18565530 AAAAGAAACTAAAAGAA
1 AAAAGAAAAGAAAAGAA
18565547 AAAAGAAAAGAAAAGAA
1 AAAAGAAAAGAAAAGAA
*
18565564 AAATAAAAAAGAAAA
1 AAA-AGAAAAGAAAA
18565579 AGGAGAGGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 18 0.64
18 10 0.36
ACGTcount: A:0.82, C:0.02, G:0.12, T:0.04
Consensus pattern (17 bp):
AAAAGAAAAGAAAAGAA
Found at i:18566673 original size:45 final size:45
Alignment explanation
Indices: 18566600--18567263 Score: 826
Period size: 45 Copynumber: 14.8 Consensus size: 45
18566590 TCAAATCAAG
* * * *
18566600 TCTTATCTCCCTGTATTGGCAGCGAAGTAGA-CTGAAGATAACATA
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAGA
* *
18566645 TCTTGTCTTCCTGTATTGGCAGCAAAGTAGATCGAAGATAACAGA
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGA
* *
18566690 TATTGTCTTCCTGTATTGGCAGCGAAATAGATCGAAGATAGCAGA
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGA
* * *
18566735 TCTTATCTTCCTATATTGACAGCGAAGTAGATCGAAGATAGCA-A
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGA
*
18566779 GTCTTG-CATTCCTATATTGGCAGCGAAGTAGA-CTGAAGATAGCAGA
1 -TCTTGTC-TTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAGA
*
18566825 TCTTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGATAGCA-A
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGA
*
18566869 GTCTTGTTTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCA-A
1 -TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGA
* * *
18566914 GTCTTGTTTTTCTGTATTTGCAGCGAAGTAGATCGAAGATAGCA-A
1 -TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGA
* *
18566959 GTCTTGTCTTCCTGTATTTGCAACGAAGTAGA-CTGAAGATAGCAGA
1 -TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAGA
* *
18567005 TCTTATCTTCCTGTATTGGCAGCGAAGTAGATTGAAGATAGCAGA
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGA
** * * *
18567050 TCTTACCTTCCTGTATTAGCAGCAAAGTGGATCGAAGATAGCAGA
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGA
* * * *
18567095 TCTTATCTTCCTGTATTGGCAGCAAAGTGGATCGAAGATAGTAGA
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGA
* *
18567140 TCTTGTCTTCCTGTATTGGCAGCGAAGTTGGTCGAAGATAGCA-A
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGA
*
18567184 GTCTTGTCTTCCTGTATTGGCAGCGAAGTAGA-CTGAAGATAGTAGA
1 -TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC-GAAGATAGCAGA
* * * * *
18567230 TCTTATCTTCTTGTACTGGCAGTGAAGCAGATCG
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCG
18567264 GAAGCACCAA
Statistics
Matches: 557, Mismatches: 47, Indels: 30
0.88 0.07 0.05
Matches are distributed among these distances:
44 7 0.01
45 543 0.97
46 7 0.01
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (45 bp):
TCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGA
Found at i:18567362 original size:40 final size:40
Alignment explanation
Indices: 18567318--18567632 Score: 184
Period size: 40 Copynumber: 7.5 Consensus size: 40
18567308 AAGCCACAGA
*
18567318 TCTTATCTCCCTAAGCAGTAGTGGAGCATATCGCATTCAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATTCAG
* * * * *
18567358 TCTTATCTCCCTAAGCAATAGCGGAGCAGA-CAGAAGAAATCAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----GCATTCAG
* ** * * *** **
18567401 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGG
1 TCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCGCA-TTCA-G
18567445 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATTCAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATTCAG
* * * *
18567485 TCTTATCTCCCTAAGCAGTAGCGGAGCAGA-CAGAAGAAATCAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----GCATTCAG
* ** * * *** **
18567528 TCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCACAG
1 TCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCGCA-TTCAG
*
18567571 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATTCAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATTCAG
*
18567612 TCTTATCTCCCTAGGCAGTAG
1 TCTTATCTCCCTAAGCAGTAG
18567633 CAGAGCTGAC
Statistics
Matches: 204, Mismatches: 53, Indels: 36
0.70 0.18 0.12
Matches are distributed among these distances:
39 2 0.01
40 77 0.38
41 5 0.02
42 9 0.04
43 64 0.31
44 47 0.23
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATTCAG
Found at i:18567481 original size:127 final size:127
Alignment explanation
Indices: 18567271--18567707 Score: 748
Period size: 127 Copynumber: 3.4 Consensus size: 127
18567261 TCGGAAGCAC
* *
18567271 CAATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAGCCACAGATCTTATCTCCCTAAGCAG
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAG
* *
18567336 TAGTGGAGCATATCGCATTCAGTCTTATCTCCCTAAGCAATAGCGGAGCAGACAGAAGAAAT
66 TAGTGGAGCAGATCGCATTCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAGAAAT
*
18567398 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGGTCTTATCTCCCTAAGCAG
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAG
18567463 TAGTGGAGCAGATCGCATTCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAGAAAT
66 TAGTGGAGCAGATCGCATTCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAGAAAT
*
18567525 CAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAG
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAG
* * * *
18567590 TAGTGGAGCAGATCACATTCAGTCTTATCTCCCTAGGCAGTAGCAGAGCTGACAGAAGAAAT
66 TAGTGGAGCAGATCGCATTCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAGAAAT
* * * *
18567652 CAATCCTATATCACTGAAGTTGCAGTGGAGTGAATTAAAACCACAGATCTTATCTC
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTC
18567708 TCTGAAGTTA
Statistics
Matches: 294, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
127 294 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (127 bp):
CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGCATTCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAGAAAT
Found at i:18567715 original size:44 final size:43
Alignment explanation
Indices: 18567665--18567792 Score: 109
Period size: 41 Copynumber: 3.0 Consensus size: 43
18567655 TCCTATATCA
*
18567665 CTGAAGTTGCAGTGGAGTGAATTAAAACCACAGATCTTATCTCT
1 CTGAAGTTGCAGTGGAG-GAATTAAAACCACAAATCTTATCTCT
* * * *** * *
18567709 CTGAAGTTACAGTAGAGCAGATCGCATCCA-ATA-C-TATCTCT
1 CTGAAGTTGCAGTGGAGGA-ATTAAAACCACAAATCTTATCTCT
* *
18567750 CTGAAGTTGTAGTGGAGCGGATTAAAACCACAAATCTTATCTC
1 CTGAAGTTGCAGTGGAG-GAATTAAAACCACAAATCTTATCTC
18567793 CTTAAGCAGT
Statistics
Matches: 61, Mismatches: 18, Indels: 10
0.69 0.20 0.11
Matches are distributed among these distances:
41 27 0.44
42 3 0.05
43 4 0.07
44 27 0.44
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (43 bp):
CTGAAGTTGCAGTGGAGGAATTAAAACCACAAATCTTATCTCT
Found at i:18567789 original size:212 final size:212
Alignment explanation
Indices: 18567525--18567919 Score: 612
Period size: 212 Copynumber: 1.9 Consensus size: 212
18567515 CAGAAGAAAT
* *
18567525 CAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCCCTAAGCAG
1 CAATACTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCACAAATCTTATCTCCCTAAGCAG
* * *
18567590 TAGTGGAGCAGATCACATTCAGTCTTATCTCCCTAGGCAGTAGCAGAGCTGACAGAAGAAATCAA
66 TAGTGGAGCAGATCACATTCAGTCTTATCTCCCTAAGCAGTAGCAGAGCAGACAGAAAAAATCAA
* *
18567655 TCCTAT-ATCACTGAAGTTGCAGTGGAGTGAATTAAAACCACAGATCTTATCTCTCTGAAGTTAC
131 TACTATCATC-CTGAAGTTGCAGTGGAGCGAATTAAAACCACAGATCTTATCTCTCTGAAGTTAC
18567719 AGTAGAGCAGATCGCATC
195 AGTAGAGCAGATCGCATC
* * * *
18567737 CAATACTATCTCTCTGAAGTTGTAGTGGAGCGGATTAAAACCACAAATCTTATCTCCTTAAGCAG
1 CAATACTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCACAAATCTTATCTCCCTAAGCAG
** *
18567802 TAGTGGAGCAGATCGTATTCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAAAAATCAA
66 TAGTGGAGCAGATCACATTCAGTCTTATCTCCCTAAGCAGTAGCAGAGCAGACAGAAAAAATCAA
* * * *
18567867 TACTATCTTCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAGGTCTTATCTC
131 TACTATCATCCTGAAGTTGCAGTGGAGCGAATTAAAACCACAGATCTTATCTC
18567920 CCTAAGCAGT
Statistics
Matches: 164, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
212 162 0.99
213 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (212 bp):
CAATACTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCACAAATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCACATTCAGTCTTATCTCCCTAAGCAGTAGCAGAGCAGACAGAAAAAATCAA
TACTATCATCCTGAAGTTGCAGTGGAGCGAATTAAAACCACAGATCTTATCTCTCTGAAGTTACA
GTAGAGCAGATCGCATC
Found at i:18567806 original size:43 final size:41
Alignment explanation
Indices: 18567758--18567941 Score: 129
Period size: 43 Copynumber: 4.3 Consensus size: 41
18567748 CTCTGAAGTT
* *
18567758 GTAGTGGAGCGGATTAAAACCACAAATCTTATCTCCTTAAGCA
1 GTAGTGGAGCAGA-TAAAACCAC-AATCTTATCTCCCTAAGCA
*** ** *
18567801 GTAGTGGAGCAGATCGTA-TTCAGTCTTATCTCCCTAAGCA
1 GTAGTGGAGCAGATAAAACCACAATCTTATCTCCCTAAGCA
* * ** * **
18567841 GTAGCGGAGCAGACAGAAAAAATCAATAC-TATCTTCCTGAAGTT
1 GTAGTGGAGCAGATA-AAACCA-CAAT-CTTATCTCCCT-AAGCA
* *
18567885 GTAGTGGAGCGGATTAAAACCACAGGTCTTATCTCCCTAAGCA
1 GTAGTGGAGCAGA-TAAAACCACA-ATCTTATCTCCCTAAGCA
18567928 GTAGTGGAGCAGAT
1 GTAGTGGAGCAGAT
18567942 CGCATTCAGT
Statistics
Matches: 104, Mismatches: 29, Indels: 17
0.69 0.19 0.11
Matches are distributed among these distances:
40 29 0.28
41 2 0.02
42 3 0.03
43 41 0.39
44 28 0.27
45 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (41 bp):
GTAGTGGAGCAGATAAAACCACAATCTTATCTCCCTAAGCA
Found at i:18567833 original size:40 final size:40
Alignment explanation
Indices: 18567784--18567980 Score: 155
Period size: 40 Copynumber: 4.8 Consensus size: 40
18567774 AAACCACAAA
* *
18567784 TCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGTATTCAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATTCAG
* * *
18567824 TCTTATCTCCCTAAGCAGTAGCGGAGCAGA-CAGAAAAAATCAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-G---AATTCAG
* ** * ** **
18567867 TAC-TATCTTCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAGG
1 T-CTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCGAA-TTCA-G
*
18567911 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATTCAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATTCAG
* *
18567951 TCTTATCTCCCTAAGTAGTAGCGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
18567981 CAGAAGAAAT
Statistics
Matches: 120, Mismatches: 26, Indels: 22
0.71 0.15 0.13
Matches are distributed among these distances:
39 1 0.01
40 58 0.48
41 2 0.02
42 4 0.03
43 31 0.26
44 24 0.20
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATTCAG
Found at i:18567897 original size:127 final size:127
Alignment explanation
Indices: 18567737--18568008 Score: 447
Period size: 127 Copynumber: 2.1 Consensus size: 127
18567727 AGATCGCATC
*
18567737 CAATACTATC-TCTCTGAAGTTGTAGTGGAGCGGATTAAAACCACAAATCTTATCTCCTTAAGCA
1 CAATACTATCTTC-CTGAAGTTGTAGTGGAGCGGATTAAAACCACAAATCTTATCTCCCTAAGCA
*
18567801 GTAGTGGAGCAGATCGTATTCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAAAAAT
65 GTAGTGGAGCAGATCGCATTCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAAAAAT
**
18567864 CAATACTATCTTCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAGGTCTTATCTCCCTAAGCAG
1 CAATACTATCTTCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAAATCTTATCTCCCTAAGCAG
* *
18567929 TAGTGGAGCAGATCGCATTCAGTCTTATCTCCCTAAGTAGTAGCGGAGCAGACAGAAGAAAT
66 TAGTGGAGCAGATCGCATTCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAAAAAT
* * *
18567991 TAATCCTATCTCCCTGAA
1 CAATACTATCTTCCTGAA
18568009 ATTGAAGCAG
Statistics
Matches: 135, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
127 133 0.99
128 2 0.01
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (127 bp):
CAATACTATCTTCCTGAAGTTGTAGTGGAGCGGATTAAAACCACAAATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGCATTCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACAGAAAAAAT
Found at i:18568108 original size:45 final size:45
Alignment explanation
Indices: 18568039--18568146 Score: 180
Period size: 45 Copynumber: 2.4 Consensus size: 45
18568029 AGATAGAAAG
*
18568039 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGACTGAATATAGCAGA
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGACTGAAAATAGCAGA
* *
18568084 TCTTGTCTTCTTGTATTGGTAGCGAAGTAGACTGAAAATAGCAGA
1 TCTTGTCTTCCTGTATTGGCAGCGAAGTAGACTGAAAATAGCAGA
*
18568129 TCTTGCCTTCCTGTATTG
1 TCTTGTCTTCCTGTATTG
18568147 ATGACGAAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (45 bp):
TCTTGTCTTCCTGTATTGGCAGCGAAGTAGACTGAAAATAGCAGA
Found at i:18568311 original size:50 final size:50
Alignment explanation
Indices: 18568179--18568717 Score: 300
Period size: 50 Copynumber: 10.8 Consensus size: 50
18568169 CCATAGTTTA
* * * * *
18568179 CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTTCCTGACAGTG
1 CAATTGAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTG
* * ** * * * * *
18568229 CAGTGGAGCAGATTAAAGCTACGACGACGAATCTTGCTTCCCCGACATTG
1 CAATTGAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTG
* * * * **
18568279 CAATTAAAAAGATTGAAGCCGCAACGGTGAATCTTACTTCCTTCGTGA-TG
1 CAATTGAAAAGATTGAAGCCACAACGGCGAATCTTACTTCC-CCGACATTG
* * ** * *
18568329 CAGTGGATCAGATTGAAGCTACAACAGCGAATC-T-CGTTCCCCGACATTG
1 CAATTGAAAAGATTGAAGCCACAACGGCGAATCTTAC-TTCCCCGACATTG
* ** * ** * * *
18568378 CAATTAAAAAGATTGAAGCCGTAACGACGAATCTTACTTTTCTGGCAGTG
1 CAATTGAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTG
* * * ** * * * * ** *
18568428 TAGTGGAGCAGATTAAAGCTACGACGGTGAATCTTGTTTCCCCCACATTG
1 CAATTGAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTG
* * **
18568478 CAATT-AAAAGATTGAAGCCACAACGGTGAATCTTAC-TCCCCTGGCGGTG
1 CAATTGAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCC-GACATTG
* * * * * ** **
18568527 CAGTGGAATAGATTGAAGCTACGACGAAGAATCTTGTTTCCCCGACATTG
1 CAATTGAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTG
* * * * **
18568577 CAATT-AAAAGATTAAAGCCGCAACGGCGAATCTTAC-TCCACTGGCGGTG
1 CAATTGAAAAGATTGAAGCCACAACGGCGAATCTTACTTCC-CCGACATTG
* * * * * ** **
18568626 CAGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCCCCGGTATTG
1 CAATTGAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTG
**
18568676 CAATTGAAAAGATTGAAGCCACAACGATGAATCTTACTTCCC
1 CAATTGAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCC
18568718 TGGCGGTGTA
Statistics
Matches: 338, Mismatches: 140, Indels: 22
0.68 0.28 0.04
Matches are distributed among these distances:
48 12 0.04
49 90 0.27
50 224 0.66
51 12 0.04
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.25
Consensus pattern (50 bp):
CAATTGAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACATTG
Found at i:18568397 original size:99 final size:100
Alignment explanation
Indices: 18568179--18568782 Score: 661
Period size: 99 Copynumber: 6.1 Consensus size: 100
18568169 CCATAGTTTA
18568179 CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTTCC-T-GAC-AGTGCAGTGGAGCAGA
1 CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTAC-TTCCTTCG-CGA-TGCAGTGGAGCAGA
* * *
18568241 TTAAAGCTACGACGACGAATCTTGCTTCCCCGACATTG
63 TTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTG
* * *
18568279 CAATTAAAAAGATTGAAGCCGCAACGGTGAATCTTACTTCCTTCGTGATGCAGTGGATCAGATTG
1 CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCTTCGCGATGCAGTGGAGCAGATTG
* * *
18568344 AAGCTACAACAGCGAATCTCG-TTCCCCGACATTG
66 AAGCTACGACGGCGAATCTTGTTTCCCCGACATTG
* * *
18568378 CAATTAAAAAGATTGAAGCCGTAACGACGAATCTTACTT--TTCTG-GCAGTGTAGTGGAGCAGA
1 CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCTTC-GCG-A-TGCAGTGGAGCAGA
* * *
18568440 TTAAAGCTACGACGGTGAATCTTGTTTCCCCCACATTG
63 TTGAAGCTACGACGGCGAATCTTGTTTCCCCGACATTG
* * * * * * **
18568478 CAATT-AAAAGATTGAAGCCACAACGGTGAATCTTACTCCCCTGGCGGTGCAGTGGAATAGATTG
1 CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCTTCGCGATGCAGTGGAGCAGATTG
**
18568542 AAGCTACGACGAAGAATCTTGTTTCCCCGACATTG
66 AAGCTACGACGGCGAATCTTGTTTCCCCGACATTG
* * * * *
18568577 CAATT-AAAAGATTAAAGCCGCAACGGCGAATCTTAC-TCCACTGGCGGTGCAGTGGAACAGATT
1 CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCC-TTCGCGATGCAGTGGAGCAGATT
**
18568640 GAAGCTACGACGGCGAATCTTGTTTCCCCGGTATTG
65 GAAGCTACGACGGCGAATCTTGTTTCCCCGACATTG
* * ** * * * * *
18568676 CAATTGAAAAGATTGAAGCCACAACGATGAATCTTACTTCCCTGGCGGTGTAGTGGGGCAGATTG
1 CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCTTCGCGATGCAGTGGAGCAGATTG
* * * *
18568741 AAGCTACAATGGCGAATCTTGCTTCCCCAACATTG
66 AAGCTACGACGGCGAATCTTGTTTCCCCGACATTG
*
18568776 CAGTTAA
1 CAATTAA
18568783 TTTGACAGAA
Statistics
Matches: 433, Mismatches: 58, Indels: 26
0.84 0.11 0.05
Matches are distributed among these distances:
97 4 0.01
98 4 0.01
99 249 0.58
100 169 0.39
101 7 0.02
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (100 bp):
CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTCCTTCGCGATGCAGTGGAGCAGATTG
AAGCTACGACGGCGAATCTTGTTTCCCCGACATTG
Found at i:18568570 original size:199 final size:198
Alignment explanation
Indices: 18568179--18568782 Score: 809
Period size: 199 Copynumber: 3.0 Consensus size: 198
18568169 CCATAGTTTA
* *
18568179 CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTTCCTGACAGTGCAGTGGAGCAGATTA
1 CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTTACTGGCAGTGCAGTGGAGCAGATTA
* * *
18568244 AAGCTACGACGACGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGGTGA
66 AAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGA
* * * * *
18568309 ATCTTACTTCCTTCGTGATGCAGTGGATCAGATTGAAGCTACAAC-AGCGAATCTCGTTCCCCGA
131 ATCTTACTTCCCTGGCGGTGCAGTGGAT-AGATTGAAGCTACAACGA-CGAATCTTGTTCCCCGA
18568373 CATTG
194 CATTG
* * * *
18568378 CAATTAAAAAGATTGAAGCCGTAACGACGAATCTTACTTTTCTGGCAGTGTAGTGGAGCAGATTA
1 CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTTACTGGCAGTGCAGTGGAGCAGATTA
* *
18568443 AAGCTACGACGGTGAATCTTGTTTCCCCCACATTGCAATT-AAAAGATTGAAGCCACAACGGTGA
66 AAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGA
* * *
18568507 ATCTTACTCCCCTGGCGGTGCAGTGGAATAGATTGAAGCTACGACGAAGAATCTTGTTTCCCCGA
131 ATCTTACTTCCCTGGCGGTGCAGTGG-ATAGATTGAAGCTACAACGACGAATCTTG-TTCCCCGA
18568572 CATTG
194 CATTG
* ** * * *
18568577 CAATT-AAAAGATTAAAGCCGCAACGGCGAATCTTACTCCACTGGCGGTGCAGTGGAACAGATTG
1 CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTTACTGGCAGTGCAGTGGAGCAGATTA
** * *
18568641 AAGCTACGACGGCGAATCTTGTTTCCCCGGTATTGCAATTGAAAAGATTGAAGCCACAACGATGA
66 AAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGA
* ** * * *
18568706 ATCTTACTTCCCTGGCGGTGTAGTGGGGCAGATTGAAGCTACAATGGCGAATCTTGCTTCCCCAA
131 ATCTTACTTCCCTGGCGGTGCAGT-GGATAGATTGAAGCTACAACGACGAATCTTG-TTCCCCGA
18568771 CATTG
194 CATTG
*
18568776 CAGTTAA
1 CAATTAA
18568783 TTTGACAGAA
Statistics
Matches: 355, Mismatches: 44, Indels: 11
0.87 0.11 0.03
Matches are distributed among these distances:
198 151 0.43
199 201 0.57
200 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (198 bp):
CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTACTTTACTGGCAGTGCAGTGGAGCAGATTA
AAGCTACGACGGCGAATCTTGTTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGTGA
ATCTTACTTCCCTGGCGGTGCAGTGGATAGATTGAAGCTACAACGACGAATCTTGTTCCCCGACA
TTG
Found at i:18570481 original size:11 final size:11
Alignment explanation
Indices: 18570451--18570482 Score: 55
Period size: 12 Copynumber: 2.8 Consensus size: 11
18570441 TAAAAAAATA
18570451 ATTTATTTAAT
1 ATTTATTTAAT
18570462 ATTTCATTTAAT
1 ATTT-ATTTAAT
18570474 ATTTATTTA
1 ATTTATTTA
18570483 CTTAATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (11 bp):
ATTTATTTAAT
Found at i:18579490 original size:27 final size:27
Alignment explanation
Indices: 18579439--18579490 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
18579429 TTAATCTAAA
*
18579439 GATTTATTTATTACTAATATTAATTAT
1 GATTTATTTATTACTAATATAAATTAT
18579466 GATTTA-TTATTA-TAATCTATAAATT
1 GATTTATTTATTACTAA--TATAAATT
18579491 GATTTCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 3 0.14
26 6 0.27
27 13 0.59
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (27 bp):
GATTTATTTATTACTAATATAAATTAT
Found at i:18580461 original size:197 final size:197
Alignment explanation
Indices: 18580126--18580528 Score: 790
Period size: 197 Copynumber: 2.0 Consensus size: 197
18580116 ATTTTGATTT
18580126 TACAGCTTTTATAATAATGAATAAGTGGTTGTGTTTCTATAATGGCAGGAAAGACGATAATAATT
1 TACAGCTTTTATAATAATGAATAAGTGGTTGTGTTTCTATAATGGCAGGAAAGACGATAATAATT
18580191 TCCAATCAGCCTTATTTCTATAAGAAAGCTGAACTTTTTCCGGGTAGTGCTTTTGTAATTGGTGC
66 TCCAATCAGCCTTATTTCTATAAGAAAGCTGAACTTTTTCCGGGTAGTGCTTTTGTAATTGGTGC
18580256 TGACACTGCAGTGAGGCTTATTAATGTATGACACTTTGAATTCCTTAAATATTATGACATTATAT
131 TGACACTGCAGTGAGGCTTATTAATGTATGACACTTTGAATTCCTTAAATATTATGACATTATAT
18580321 CA
196 CA
18580323 TACAGCTTTTATAATAATGAATAAGTGGTTGTGTTTCTATAATGGCAGGAAAGACGATAATAATT
1 TACAGCTTTTATAATAATGAATAAGTGGTTGTGTTTCTATAATGGCAGGAAAGACGATAATAATT
18580388 TCCAATCAGCCTTATTTCTATAAGAAAGCTGAACTTTTTCCGGGTAGTGCTTTTGTAATTGGTGC
66 TCCAATCAGCCTTATTTCTATAAGAAAGCTGAACTTTTTCCGGGTAGTGCTTTTGTAATTGGTGC
18580453 TGACACTGCAGTGAGGCTTATTAATGTATGACACTTTGAATTCCTTAAATATTATGACATTATAT
131 TGACACTGCAGTGAGGCTTATTAATGTATGACACTTTGAATTCCTTAAATATTATGACATTATAT
18580518 CA
196 CA
18580520 TGACA-CTTT
1 T-ACAGCTTT
18580529 ATAGTTCAAA
Statistics
Matches: 205, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
197 202 0.99
198 3 0.01
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (197 bp):
TACAGCTTTTATAATAATGAATAAGTGGTTGTGTTTCTATAATGGCAGGAAAGACGATAATAATT
TCCAATCAGCCTTATTTCTATAAGAAAGCTGAACTTTTTCCGGGTAGTGCTTTTGTAATTGGTGC
TGACACTGCAGTGAGGCTTATTAATGTATGACACTTTGAATTCCTTAAATATTATGACATTATAT
CA
Found at i:18595568 original size:35 final size:35
Alignment explanation
Indices: 18595522--18595591 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
18595512 TGTAGTAGTT
18595522 CCATAACATTACAAAACATCTTATTCAGATGTATG
1 CCATAACATTACAAAACATCTTATTCAGATGTATG
18595557 CCATAACATTACAAAACATCTTATTCAGATGTATG
1 CCATAACATTACAAAACATCTTATTCAGATGTATG
18595592 TAATAAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (35 bp):
CCATAACATTACAAAACATCTTATTCAGATGTATG
Found at i:18599672 original size:21 final size:22
Alignment explanation
Indices: 18599626--18599681 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
18599616 CGATAATGGT
*
18599626 ACTACGGTGCAAGTGAAAGTGGC
1 ACTACGGTGCAAGTG-AAGTGAC
*
18599649 ACTACTGTGCAAGTG-AGTGAC
1 ACTACGGTGCAAGTGAAGTGAC
*
18599670 ACTTCGGTGCAA
1 ACTACGGTGCAA
18599682 AGAATAGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 15 0.52
23 14 0.48
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (22 bp):
ACTACGGTGCAAGTGAAGTGAC
Found at i:18603613 original size:266 final size:267
Alignment explanation
Indices: 18603135--18603671 Score: 995
Period size: 266 Copynumber: 2.0 Consensus size: 267
18603125 GAATGGAATT
*
18603135 AATTTCTTGTAAATTTTGTGACTTGAGGGTTTTTTAGGATGATAATGAATTAGGCATAATATTTT
1 AATTTCTTGTAAATTTTGTGACTTGAGGGTTTTTTAGGATAATAATGAATTAGGCATAATATTTT
*
18603200 TTGGCTTAATTAAGAAAAAAAATGAGCTTGTTTCGGTTTTAGGGACTAAATTGAATAAAATGTAA
66 TGGGCTTAATTAAGAAAAAAAATGAGCTTGTTTCGGTTTTAGGGACTAAATTGAATAAAATGTAA
* * * *
18603265 AATTTTAGGGCAATTATGAAAAATGTCAATAAAAAATTCATATGCATCAAGTGGACTTTTATAAT
131 AATTTTAGGGAAATTATGAAAAATGTCAATAAAAAAGTCATATGCATCAAATGGACGTTTATAAT
18603330 GTACTTGGGACTGATAATTGAAATAAATTATCGTATAGATCAAGAACCGATAGAAAATTATGGAA
196 GTACTTGGGACTGATAATTGAAATAAATTATCGTATAGATCAAGAACCGATAGAAAATTATGGAA
18603395 AAAAGAA
261 AAAAGAA
18603402 AATTTCTTGTAAATTTTGTGACTTGAGGGTTTTTTAGGATAATAATGAATTAGGCATAATATTTT
1 AATTTCTTGTAAATTTTGTGACTTGAGGGTTTTTTAGGATAATAATGAATTAGGCATAATATTTT
18603467 TGGGCTTAATTAAG-AAAAAAATGAGCTTGTTTCGGTTTTAGGGACTAAATTGAATAAAATGTAA
66 TGGGCTTAATTAAGAAAAAAAATGAGCTTGTTTCGGTTTTAGGGACTAAATTGAATAAAATGTAA
18603531 AATTTTAGGGAAATTATGAAAAATGTCAATAAAAAAGTCATATGCATCAAATGGACGTTTATAAT
131 AATTTTAGGGAAATTATGAAAAATGTCAATAAAAAAGTCATATGCATCAAATGGACGTTTATAAT
*
18603596 GTACTTGGGATTGATAATTGAAATAAATTATCGTATAGATCAAGAACCGATAGAAAATTATGGAA
196 GTACTTGGGACTGATAATTGAAATAAATTATCGTATAGATCAAGAACCGATAGAAAATTATGGAA
*
18603661 AAGAGAA
261 AAAAGAA
18603668 AATT
1 AATT
18603672 ACTCACTAGT
Statistics
Matches: 262, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
266 185 0.71
267 77 0.29
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.34
Consensus pattern (267 bp):
AATTTCTTGTAAATTTTGTGACTTGAGGGTTTTTTAGGATAATAATGAATTAGGCATAATATTTT
TGGGCTTAATTAAGAAAAAAAATGAGCTTGTTTCGGTTTTAGGGACTAAATTGAATAAAATGTAA
AATTTTAGGGAAATTATGAAAAATGTCAATAAAAAAGTCATATGCATCAAATGGACGTTTATAAT
GTACTTGGGACTGATAATTGAAATAAATTATCGTATAGATCAAGAACCGATAGAAAATTATGGAA
AAAAGAA
Found at i:18605345 original size:18 final size:18
Alignment explanation
Indices: 18605322--18605356 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18605312 TATGTCAAAA
*
18605322 TGGTATCGATATTTAATT
1 TGGTATCGATATCTAATT
18605340 TGGTATCGATATCTAAT
1 TGGTATCGATATCTAAT
18605357 AACAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.09, G:0.17, T:0.46
Consensus pattern (18 bp):
TGGTATCGATATCTAATT
Found at i:18607634 original size:40 final size:40
Alignment explanation
Indices: 18607574--18607713 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
18607564 AAACACACAG
* *
18607574 TTTGGCACCCAATGCCTCATCGGATAATTCGAAGTAATAA
1 TTTGACACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
* **
18607614 TTTGACACCCAGTGTCTCATC-GACTAAACCGAAGT-A-AA
1 TTTGACACCCAGTGCCTCATCGGA-TAATTCGAAGTAATAA
* ** * *
18607652 -TTGGCACCCAGTGCCTCATCAAATATATTTGAAGTAGTAA
1 TTTGACACCCAGTGCCTCATCGGATA-ATTCGAAGTAATAA
* * *
18607692 ATTGACACCTAGTGTCTCATCG
1 TTTGACACCCAGTGCCTCATCG
18607714 ACTCGAAGTC
Statistics
Matches: 78, Mismatches: 16, Indels: 11
0.74 0.15 0.10
Matches are distributed among these distances:
37 20 0.26
38 9 0.12
39 3 0.04
40 29 0.37
41 17 0.22
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (40 bp):
TTTGACACCCAGTGCCTCATCGGATAATTCGAAGTAATAA
Found at i:18607915 original size:24 final size:24
Alignment explanation
Indices: 18607870--18607916 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
18607860 TATATATACC
18607870 AATTCAATCAATATAAACTCAATA
1 AATTCAATCAATATAAACTCAATA
18607894 AATTC-ATCACATACTAAA-TCAAT
1 AATTCAATCA-ATA-TAAACTCAAT
18607917 TCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.19, G:0.00, T:0.30
Consensus pattern (24 bp):
AATTCAATCAATATAAACTCAATA
Found at i:18612341 original size:24 final size:24
Alignment explanation
Indices: 18612314--18612365 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
18612304 TTAGTAAGTC
*
18612314 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
18612338 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
18612362 AAAT
1 AAAT
18612366 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:18614434 original size:2 final size:2
Alignment explanation
Indices: 18614427--18614451 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
18614417 ATGGTATGCA
18614427 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
18614452 TTGTGTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:18658752 original size:15 final size:15
Alignment explanation
Indices: 18658728--18658758 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
18658718 GTTTAGCCTT
*
18658728 GATCTTATTGGTTAA
1 GATCTCATTGGTTAA
18658743 GATCTCATTGGTTAA
1 GATCTCATTGGTTAA
18658758 G
1 G
18658759 GTAGGTTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.10, G:0.23, T:0.42
Consensus pattern (15 bp):
GATCTCATTGGTTAA
Found at i:18667326 original size:43 final size:43
Alignment explanation
Indices: 18667267--18667428 Score: 154
Period size: 43 Copynumber: 3.8 Consensus size: 43
18667257 AATGCCAACA
* * * * *
18667267 TCCCAGACATGATCTTACATGTAATCACATATCGATGCCACTG
1 TCCCAGACAGGGTCTTACACGAAAACACATATCGATGCCACTG
* * * *
18667310 TCCTAGACAGGGTCTTACAC-AAATCAAATA-CGATGCCAATG
1 TCCCAGACAGGGTCTTACACGAAAACACATATCGATGCCACTG
* * *
18667351 TCCCAGACATGGTCTTACGCGTAAACACA-AGTCGATGCCAAC-G
1 TCCCAGACAGGGTCTTACACGAAAACACATA-TCGATGCC-ACTG
18667394 TCCCAGAC-GTGGTCTTACACGAAAACACATATCGA
1 TCCCAGACAG-GGTCTTACACGAAAACACATATCGA
18667429 AATCCTATGT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
41 28 0.29
42 13 0.14
43 53 0.55
44 2 0.02
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (43 bp):
TCCCAGACAGGGTCTTACACGAAAACACATATCGATGCCACTG
Found at i:18667408 original size:84 final size:84
Alignment explanation
Indices: 18667258--18667413 Score: 201
Period size: 84 Copynumber: 1.9 Consensus size: 84
18667248 GACTCGTACA
* * *
18667258 ATGCCAACATCCCAGACATGATCTTACATGTAATCACATATCGATGCCACTGTCCTAGACAGGGT
1 ATGCCAACATCCCAGACATGATCTTACACGTAAACACATATCGATGCCACTGTCCCAGACAGGGT
18667323 CTTACACAAATCAAATACG
66 CTTACACAAATCAAATACG
** * *
18667342 ATGCCAATGTCCCAGACATGGTCTTACGCGTAAACACA-AGTCGATGCCAAC-GTCCCAGAC-GT
1 ATGCCAACATCCCAGACATGATCTTACACGTAAACACATA-TCGATGCC-ACTGTCCCAGACAG-
18667404 GGTCTTACAC
63 GGTCTTACAC
18667414 GAAAACACAT
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
83 2 0.03
84 58 0.94
85 2 0.03
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (84 bp):
ATGCCAACATCCCAGACATGATCTTACACGTAAACACATATCGATGCCACTGTCCCAGACAGGGT
CTTACACAAATCAAATACG
Found at i:18672672 original size:21 final size:21
Alignment explanation
Indices: 18672624--18672677 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
18672614 AACAACGGTG
*
18672624 GCGGTGAGATTAGTTATTGAA
1 GCGGTGAGATTAGATATTGAA
** * *
18672645 GTAGTGAGATTGGATATTGTA
1 GCGGTGAGATTAGATATTGAA
18672666 GCGGTGAGATTA
1 GCGGTGAGATTA
18672678 AAAACAGCGG
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.28, C:0.04, G:0.35, T:0.33
Consensus pattern (21 bp):
GCGGTGAGATTAGATATTGAA
Found at i:18679317 original size:13 final size:13
Alignment explanation
Indices: 18679299--18679323 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18679289 TTACACAAAA
18679299 TATAAAAATATAT
1 TATAAAAATATAT
18679312 TATAAAAATATA
1 TATAAAAATATA
18679324 AAACGAGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TATAAAAATATAT
Found at i:18683518 original size:13 final size:13
Alignment explanation
Indices: 18683500--18683536 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
18683490 CTAGCCCACC
18683500 TATATTAAATTTT
1 TATATTAAATTTT
*
18683513 TATATT-ATTTTT
1 TATATTAAATTTT
18683525 TATA-TAAATTTT
1 TATATTAAATTTT
18683537 AAATATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
11 1 0.05
12 14 0.67
13 6 0.29
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TATATTAAATTTT
Done.