Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 72 of 203
Found at i:22985227 original size:76 final size:76
Alignment explanation
Indices: 22985141--22985298 Score: 291
Period size: 76 Copynumber: 2.1 Consensus size: 76
22985131 TTCTTAAGAA
* *
22985141 TCATAAATGCCAAATATTTTGGAAATTTGTAAAATATGACGATTTTAATGCTTTGGCGCAACCAA
1 TCATAAATGCCAAATATTTTGGAAATTTGTAAAATATGACGATTTTAATACTTTGACGCAACCAA
22985206 AATATATGTTT
66 AATATATGTTT
22985217 TCATAAATGCCAAATATTTTGGAAATTTGTAAAATATGACGATTTTAATACTTTGACGCAACCAA
1 TCATAAATGCCAAATATTTTGGAAATTTGTAAAATATGACGATTTTAATACTTTGACGCAACCAA
22985282 AATATATGTTT
66 AATATATGTTT
22985293 TC-TAAA
1 TCATAAA
22985299 AGGCATGTTA
Statistics
Matches: 80, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
75 4 0.05
76 76 0.95
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.37
Consensus pattern (76 bp):
TCATAAATGCCAAATATTTTGGAAATTTGTAAAATATGACGATTTTAATACTTTGACGCAACCAA
AATATATGTTT
Found at i:22985657 original size:21 final size:21
Alignment explanation
Indices: 22985633--22985673 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
22985623 ATGTATATGA
22985633 ATAGGAAAT-ATAATAATAATG
1 ATAGGAAATAAT-ATAATAATG
*
22985654 ATAGTAAATAATATAATAAT
1 ATAGGAAATAATATAATAAT
22985674 AACACAATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (21 bp):
ATAGGAAATAATATAATAATG
Found at i:22987174 original size:44 final size:44
Alignment explanation
Indices: 22987124--22988330 Score: 1348
Period size: 44 Copynumber: 27.5 Consensus size: 44
22987114 TCCTCGCTGC
* * ** * *
22987124 CAATACAGGAAGACAAGGTCTGCTGTCTTTGATCTACTTCCTGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
* * * *
22987168 CAATACACGAAGACAAGATCCATTATCTTCGATCTACTTCATAT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
* * * *
22987212 CAATATATGAAAATAAGAT---CTATCTCTGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
*
22987253 CAATACATGAAGACAAGATCCACTATCTCTGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
*
22987297 CAATACATGAAGACAAGATCCACTATCTCTGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
*
22987341 CAATACATGAAGACAAGATCCACTATCTCTGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
* *
22987385 CAATACATGAAGACAAGATCCATTATCTTCGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
* *
22987429 CAATACATGAAGATAAGA--CATGCTATCTCTGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCA--CTATCTTTGATCTACTTCATGT
* *
22987473 CAATACATGAAGATAAGA--CATGCTATCTCTGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCA--CTATCTTTGATCTACTTCATGT
* * *
22987517 CAATACATGAAGACAAGATCTATTATCTTCGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
* * *
22987561 CAATATATGAAGATAAGATCCACTATCTCTGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
*
22987605 CAATACATGAAGACAAGATCCACTATCTCTGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
*
22987649 CAATACATGAAGACAAGATCCACTATCTCTGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
*
22987693 CAATACATGAAGACAAGATCCACTATCTCTGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
*
22987737 CAATACATGAAGACAAGATCCACTATCTCTGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
*
22987781 CAATACATGAAGACAAGATCCACTATCTCTGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
*
22987825 CAATACATGAAGACAAGATCCACTATCTCTGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
* * *
22987869 CAATACATGAAGACAAGATCCATTATCCTCGATCTACTTCATGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
* * ***
22987913 CAATACATGAAGACAAGATCCATTATCTTCGATCTACTTCACCAC
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCA-TGT
* *** ** ** * *
22987958 CAGTATGGGAAGACAAGATCTGCTATCTTCAATCTACTTCACGC
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
*** * * * *
22988002 CAATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCACGC
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
**** * * *
22988046 CAATACATGAAGACAAGATTTGTTTTCTTTGATCTACTTCACGC
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
* *** * * *
22988090 CGATACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCACGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
** * * * * * * *
22988134 TGATACATGAAGACAAGATCTATTTTCTTCGATCGACTTCACGC
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
* * * * * ***
22988178 CGATACATGAAGATAAGATCTACTTTCTTCGATCTACTTCACCAC
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCA-TGT
* *** ** * * *
22988223 CAGTATGGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGT
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
* * * * * * *
22988267 TAATACATGAAGACAAGATCTATTTTCTTCGATCTACTTCACGC
1 CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
22988311 CAATACATGAAGACAAGATC
1 CAATACATGAAGACAAGATC
22988331 TGCTGCCTTT
Statistics
Matches: 1057, Mismatches: 97, Indels: 18
0.90 0.08 0.02
Matches are distributed among these distances:
41 34 0.03
42 2 0.00
44 951 0.90
45 69 0.07
46 1 0.00
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.31
Consensus pattern (44 bp):
CAATACATGAAGACAAGATCCACTATCTTTGATCTACTTCATGT
Found at i:22990633 original size:18 final size:18
Alignment explanation
Indices: 22990607--22990649 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
22990597 TGGCTTGGCA
*
22990607 GAAAAAATCCAAAAGAAT
1 GAAAGAATCCAAAAGAAT
**
22990625 GAAAGAATCGTAAAGAAT
1 GAAAGAATCCAAAAGAAT
22990643 GAAAGAA
1 GAAAGAA
22990650 CATTTGCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.63, C:0.07, G:0.19, T:0.12
Consensus pattern (18 bp):
GAAAGAATCCAAAAGAAT
Found at i:22994058 original size:26 final size:24
Alignment explanation
Indices: 22994002--22994046 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
22993992 ATAAAGCTTA
* *
22994002 ATATAT-ATATATTAAATATGCAT
1 ATATATGACATATAAAATATGCAT
22994025 ATATATGACATATAAAATATGC
1 ATATATGACATATAAAATATGC
22994047 GAATGTATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.38
Consensus pattern (24 bp):
ATATATGACATATAAAATATGCAT
Found at i:22994127 original size:3 final size:3
Alignment explanation
Indices: 22994068--22994110 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
22994058 AATAGGAAAT
* *
22994068 ATA ATA ATA ATA ATA ATA ATG ATA GTAA ATA AT- ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA A
22994111 CACAATGCCA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.88
4 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:22995840 original size:32 final size:32
Alignment explanation
Indices: 22995804--22995942 Score: 94
Period size: 32 Copynumber: 4.3 Consensus size: 32
22995794 GGAAAGTATA
22995804 AAATATATACGTACATATATATATAAGTTAAT
1 AAATATATACGTACATATATATATAAGTTAAT
*
22995836 AAATATATA-G-ATCATA-A-AGATAATGATTACAT
1 AAATATATACGTA-CATATATATATAA-G-TTA-AT
* ** * *
22995868 ATATATATATATAGAAAT-TATAATGGAAAG-T-AT
1 AAATATATACGTACATATATAT-AT---AAGTTAAT
22995901 AAAATATATACGTACATATATATATAAGTTAAT
1 -AAATATATACGTACATATATATATAAGTTAAT
22995934 AAATATATA
1 AAATATATA
22995943 GATCATAAAG
Statistics
Matches: 80, Mismatches: 11, Indels: 32
0.65 0.09 0.26
Matches are distributed among these distances:
29 5 0.06
30 3 0.04
31 11 0.14
32 29 0.36
33 6 0.08
34 17 0.21
35 6 0.08
37 1 0.01
38 2 0.03
ACGTcount: A:0.53, C:0.04, G:0.08, T:0.35
Consensus pattern (32 bp):
AAATATATACGTACATATATATATAAGTTAAT
Found at i:22995840 original size:52 final size:51
Alignment explanation
Indices: 22995766--22995939 Score: 161
Period size: 50 Copynumber: 3.5 Consensus size: 51
22995756 AGAAAAATAT
* *
22995766 ATATATATAGAAATT-ATAAAATATGTATGGAAAGTATAAAATATATACGTAC
1 ATATATATATAAGTTAAT-AAATAT-TATGGAAAGTATAAAATATATACGTAC
* *
22995818 ATATATATATAAGTTAATAAATA-TAT--AGA-TCATAAAGATA-ATGA-TTAC
1 ATATATATATAAGTTAATAAATATTATGGAAAGT-ATAAA-ATATAT-ACGTAC
* *
22995866 ATATATATAT-A-TATAGA-AATTATAATGGAAAGTATAAAATATATACGTAC
1 ATATATATATAAGT-TA-ATAAATATTATGGAAAGTATAAAATATATACGTAC
22995916 ATATATATATAAGTTAATAAATAT
1 ATATATATATAAGTTAATAAATAT
22995940 ATAGATCATA
Statistics
Matches: 98, Mismatches: 9, Indels: 31
0.71 0.07 0.22
Matches are distributed among these distances:
46 1 0.01
47 8 0.08
48 25 0.26
49 8 0.08
50 26 0.27
51 9 0.09
52 19 0.19
53 2 0.02
ACGTcount: A:0.52, C:0.03, G:0.09, T:0.35
Consensus pattern (51 bp):
ATATATATATAAGTTAATAAATATTATGGAAAGTATAAAATATATACGTAC
Found at i:22995867 original size:48 final size:48
Alignment explanation
Indices: 22995815--22995970 Score: 171
Period size: 48 Copynumber: 3.2 Consensus size: 48
22995805 AATATATACG
22995815 TACATATATATATAAGTTAATAAATATATAGATCATAAAGATAATGAT
1 TACATATATATATAAGTTAATAAATATATAGATCATAAAGATAATGAT
* * *
22995863 TACATATATATAT-A-TATAGA-AATTATAATGGAAAGT-ATAAA-ATATAT-ACG
1 TACATATATATATAAGT-TA-ATAAATAT-AT--AGA-TCATAAAGATA-ATGA-T
22995913 TACATATATATATAAGTTAATAAATATATAGATCATAAAGATAATGAT
1 TACATATATATATAAGTTAATAAATATATAGATCATAAAGATAATGAT
22995961 TACATATATA
1 TACATATATA
22995971 AACTTAAAAA
Statistics
Matches: 88, Mismatches: 6, Indels: 28
0.72 0.05 0.23
Matches are distributed among these distances:
46 1 0.01
47 9 0.10
48 35 0.40
49 8 0.09
50 25 0.28
51 9 0.10
52 1 0.01
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.35
Consensus pattern (48 bp):
TACATATATATATAAGTTAATAAATATATAGATCATAAAGATAATGAT
Found at i:22995900 original size:98 final size:98
Alignment explanation
Indices: 22995792--22995970 Score: 358
Period size: 98 Copynumber: 1.8 Consensus size: 98
22995782 TAAAATATGT
22995792 ATGGAAAGTATAAAATATATACGTACATATATATATAAGTTAATAAATATATAGATCATAAAGAT
1 ATGGAAAGTATAAAATATATACGTACATATATATATAAGTTAATAAATATATAGATCATAAAGAT
22995857 AATGATTACATATATATATATATAGAAATTATA
66 AATGATTACATATATATATATATAGAAATTATA
22995890 ATGGAAAGTATAAAATATATACGTACATATATATATAAGTTAATAAATATATAGATCATAAAGAT
1 ATGGAAAGTATAAAATATATACGTACATATATATATAAGTTAATAAATATATAGATCATAAAGAT
22995955 AATGATTACATATATA
66 AATGATTACATATATA
22995971 AACTTAAAAA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 81 1.00
ACGTcount: A:0.52, C:0.04, G:0.09, T:0.34
Consensus pattern (98 bp):
ATGGAAAGTATAAAATATATACGTACATATATATATAAGTTAATAAATATATAGATCATAAAGAT
AATGATTACATATATATATATATAGAAATTATA
Found at i:22995970 original size:50 final size:50
Alignment explanation
Indices: 22995818--22995970 Score: 167
Period size: 50 Copynumber: 3.1 Consensus size: 50
22995808 ATATACGTAC
22995818 ATATATATATAAGTTAATAAATATATAGATCATAAAGATAATGATTACAT
1 ATATATATATAAGTTAATAAATATATAGATCATAAAGATAATGATTACAT
* ** * *
22995868 ATATATATATATAG-AAATTATAATGGAAAG-T-ATAAA-AT-AT-A-TACGTAC
1 ATATATATATA-AGTTAA-TA-AATATATAGATCATAAAGATAATGATTAC--AT
22995916 ATATATATATAAGTTAATAAATATATAGATCATAAAGATAATGATTACAT
1 ATATATATATAAGTTAATAAATATATAGATCATAAAGATAATGATTACAT
22995966 ATATA
1 ATATA
22995971 AACTTAAAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
46 9 0.11
47 6 0.07
48 21 0.26
49 4 0.05
50 26 0.32
51 6 0.07
52 9 0.11
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.35
Consensus pattern (50 bp):
ATATATATATAAGTTAATAAATATATAGATCATAAAGATAATGATTACAT
Found at i:23002788 original size:3 final size:3
Alignment explanation
Indices: 23002780--23002811 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
23002770 AATTACAGCA
23002780 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
23002812 ACCAACAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:23005148 original size:76 final size:76
Alignment explanation
Indices: 23005019--23005168 Score: 219
Period size: 76 Copynumber: 2.0 Consensus size: 76
23005009 TTTTTAAATT
* *
23005019 AAGTGATTGGCCATAATGAAATTGAAAAGTTTATTACATAGTCCAAAAAGAATTATATTTTGAGG
1 AAGTGATTGGCCATAATGAAATTGAAAAGTTTATTACACAGTCCAAAAAGAATTATATCTTGAGG
23005084 ACACACTCAAG
66 ACACACTCAAG
* ** ** *
23005095 AAGTGATTGGTCATAATGAAATTGAGGAGTTTATTGTACAGTCCAAAACGAATTATATCTTGAGG
1 AAGTGATTGGCCATAATGAAATTGAAAAGTTTATTACACAGTCCAAAAAGAATTATATCTTGAGG
*
23005160 GCACACTCA
66 ACACACTCA
23005169 GGAATAGAAG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (76 bp):
AAGTGATTGGCCATAATGAAATTGAAAAGTTTATTACACAGTCCAAAAAGAATTATATCTTGAGG
ACACACTCAAG
Found at i:23007332 original size:34 final size:34
Alignment explanation
Indices: 23007289--23007362 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 34
23007279 TCTAGGGAGA
* * *
23007289 TTGTTAGCTTATTAGTAGTAGAAGGAAGCTAAGT
1 TTGTTAGCTTATTAATAGGAGAAGAAAGCTAAGT
* *
23007323 TTGTTAGCTTATTAATAGGAGTAGAAAGCTGAGT
1 TTGTTAGCTTATTAATAGGAGAAGAAAGCTAAGT
23007357 TTGTTA
1 TTGTTA
23007363 AAGTTTGTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.31, C:0.05, G:0.26, T:0.38
Consensus pattern (34 bp):
TTGTTAGCTTATTAATAGGAGAAGAAAGCTAAGT
Found at i:23020686 original size:91 final size:92
Alignment explanation
Indices: 23020542--23020780 Score: 264
Period size: 92 Copynumber: 2.6 Consensus size: 92
23020532 CACATTTGGT
* * * * * * *
23020542 ACCTATACTTTCACAAAATATCTAATATGGTATTTAAACTATCAATTTGTGTATTATTTGGTAAT
1 ACCTATACTTT--GAAAATATCCAATGTGATACTTGAACTATCAATTTTTGTATTATTTGGTAAT
* * *
23020607 TGTA-TTTTCATAAAATGTCCAATCTGGC
64 TATACTTTTCATAAAATATCCAATCTAGC
* * * * *
23020635 ACCTATACTTTGAAAATATCCAGTGTGGTACTTGAATTATTAATTTTTGTATTATTTGGTACTTA
1 ACCTATACTTTGAAAATATCCAATGTGATACTTGAACTATCAATTTTTGTATTATTTGGTAATTA
* *
23020700 TACTTTTCATAAAATATCCAATGTAGT
66 TACTTTTCATAAAATATCCAATCTAGC
* * * *
23020727 ACTTATACTTTGAAAATGTTCAATGTGATACTTGAACTATCAATCTTTGTATTA
1 ACCTATACTTTGAAAATATCCAATGTGATACTTGAACTATCAATTTTTGTATTA
23020781 ATATGGAACA
Statistics
Matches: 122, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
91 45 0.37
92 66 0.54
93 11 0.09
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (92 bp):
ACCTATACTTTGAAAATATCCAATGTGATACTTGAACTATCAATTTTTGTATTATTTGGTAATTA
TACTTTTCATAAAATATCCAATCTAGC
Found at i:23022979 original size:62 final size:62
Alignment explanation
Indices: 23022900--23023033 Score: 160
Period size: 62 Copynumber: 2.2 Consensus size: 62
23022890 TACACATATT
* * * * * *
23022900 ACATTGGACATTTTATGAAAATATATGTACTAAATAATACATAAATTGATAGCTCATGTACC
1 ACATTGGACATTCTATGAAAATACAAGTACCAAATAATACAGAAATTGATAGCTCAGGTACC
* * * * * *
23022962 ACATTGGACATTCTATGAAAGTACAAGTGCCAAATAATACAGCAATTGGTTGTTCAGGTACC
1 ACATTGGACATTCTATGAAAATACAAGTACCAAATAATACAGAAATTGATAGCTCAGGTACC
23023024 ACATTGGACA
1 ACATTGGACA
23023034 ATTTTGAAGT
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (62 bp):
ACATTGGACATTCTATGAAAATACAAGTACCAAATAATACAGAAATTGATAGCTCAGGTACC
Found at i:23028937 original size:27 final size:27
Alignment explanation
Indices: 23028525--23028929 Score: 453
Period size: 27 Copynumber: 15.0 Consensus size: 27
23028515 AAATATAAAA
* * *
23028525 GAAATA-CCTCCGAATGGTAAAATAACC
1 GAAATACCCT-CGAAGGGTAAAATGACT
*
23028552 GAAATACCCTCGAAGGGTAAAATGACC
1 GAAATACCCTCGAAGGGTAAAATGACT
* * *
23028579 GAAATACCCTCGAAAGGTTAAATGACC
1 GAAATACCCTCGAAGGGTAAAATGACT
* *
23028606 GAAATACCCTCAAAGGGTAAAATAACT
1 GAAATACCCTCGAAGGGTAAAATGACT
* *
23028633 GAAATACCCTCGAAGAGTAAAATGACA
1 GAAATACCCTCGAAGGGTAAAATGACT
* *
23028660 GAAATACCCT-TAAGGGTAAAATGACC
1 GAAATACCCTCGAAGGGTAAAATGACT
* * *
23028686 AAAATACCC-CTAAAAGGTAAAATGACT
1 GAAATACCCTC-GAAGGGTAAAATGACT
* *
23028713 -AGAATACCCTTGAAGGGTAAAATAACT
1 GA-AATACCCTCGAAGGGTAAAATGACT
* *
23028740 GAAATACCC-CCAGAGGGTAAAATAACT
1 GAAATACCCTCGA-AGGGTAAAATGACT
*
23028767 GAAATACCCTGGAAGGGTAAAATGACT
1 GAAATACCCTCGAAGGGTAAAATGACT
* *
23028794 GAAATATCTTCGAAGGGTAAAATGACT
1 GAAATACCCTCGAAGGGTAAAATGACT
*
23028821 GAAATACCCTCGAAGGGTAAAATGACC
1 GAAATACCCTCGAAGGGTAAAATGACT
* *
23028848 AAAATACCCCCGAAGGGTAAAATGA-T
1 GAAATACCCTCGAAGGGTAAAATGACT
*
23028874 CGAAATACCCTCGAAGGGTAAAATAACT
1 -GAAATACCCTCGAAGGGTAAAATGACT
* * *
23028902 AAAATACCCTCGAAAGGTAAAATTACT
1 GAAATACCCTCGAAGGGTAAAATGACT
23028929 G
1 G
23028930 TTATACCCCT
Statistics
Matches: 323, Mismatches: 45, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
26 23 0.07
27 294 0.91
28 6 0.02
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.18
Consensus pattern (27 bp):
GAAATACCCTCGAAGGGTAAAATGACT
Found at i:23029141 original size:26 final size:26
Alignment explanation
Indices: 23029103--23029152 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
23029093 TTGCCACATA
*
23029103 TACTGTTACTGGCAGCTTTGCTGCGT
1 TACTGTTACTGGCAGCGTTGCTGCGT
*
23029129 TACTGTTATTGGCAGCGTTGCTGC
1 TACTGTTACTGGCAGCGTTGCTGC
23029153 ATCACTACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.12, C:0.22, G:0.28, T:0.38
Consensus pattern (26 bp):
TACTGTTACTGGCAGCGTTGCTGCGT
Found at i:23029164 original size:26 final size:26
Alignment explanation
Indices: 23029112--23029169 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 26
23029102 ATACTGTTAC
* * * **
23029112 TGGCAGCTTTGCTGCGTTACTGTTAT
1 TGGCAGCGTTGCTGCATCACTACTAT
23029138 TGGCAGCGTTGCTGCATCACTACTAT
1 TGGCAGCGTTGCTGCATCACTACTAT
23029164 T-GCAGC
1 TGGCAGC
23029170 TTTGTTGTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 5 0.19
26 22 0.81
ACGTcount: A:0.16, C:0.24, G:0.26, T:0.34
Consensus pattern (26 bp):
TGGCAGCGTTGCTGCATCACTACTAT
Found at i:23036033 original size:42 final size:42
Alignment explanation
Indices: 23035974--23036127 Score: 134
Period size: 43 Copynumber: 3.7 Consensus size: 42
23035964 CGAGATTACG
23035974 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGAATTCA
1 TGTAAGACCATATCTGGGATAGTGGCATCGATATG-GAATTCA
* * * * **
23036016 TGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTTTG
1 TGTAAGACCATATCTGGGATAGTGGCATCGATATG-GAATTCA
* * * * * * *
23036059 TGTAAGACCATGGT-TGGGCTAGTAGCATTGATACGGGATACA
1 TGTAAGACCAT-ATCTGGGATAGTGGCATCGATATGGAATTCA
*
23036101 TGTAGGACCATATCTGGGATA-TGGCAT
1 TGTAAGACCATATCTGGGATAGTGGCAT
23036128 TGTTACGGTA
Statistics
Matches: 88, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
41 6 0.07
42 37 0.42
43 43 0.49
44 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATAGTGGCATCGATATGGAATTCA
Found at i:23036063 original size:43 final size:42
Alignment explanation
Indices: 23035972--23036070 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 42
23035962 ACCGAGATTA
* *
23035972 CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGAATT
1 CGTGTAAGACCATGTCTGGGACATGGCATCGATATGAGAATT
* * *
23036014 CATGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTT
1 CGTGTAAGACCATGTCTGGGACA-TGGCATCGATATGAGAATT
*
23036057 TGTGTAAGACCATG
1 CGTGTAAGACCATG
23036071 GTTGGGCTAG
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 20 0.41
43 29 0.59
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATGGCATCGATATGAGAATT
Found at i:23039609 original size:17 final size:16
Alignment explanation
Indices: 23039578--23039611 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
23039568 AAATATTATG
23039578 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
23039594 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
23039611 A
1 A
23039612 CGCCATCCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:23044346 original size:19 final size:21
Alignment explanation
Indices: 23044308--23044347 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
23044298 ATTAGGAAGA
*
23044308 TAACCTTTTGTTTCTTATTTT
1 TAACCTTTTGTCTCTTATTTT
23044329 TAACCTTTT-TCT-TTATTTT
1 TAACCTTTTGTCTCTTATTTT
23044348 AATAATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 2 0.11
21 9 0.50
ACGTcount: A:0.15, C:0.15, G:0.03, T:0.68
Consensus pattern (21 bp):
TAACCTTTTGTCTCTTATTTT
Found at i:23047855 original size:10 final size:10
Alignment explanation
Indices: 23047838--23047871 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
23047828 GACAATTCTT
23047838 TATAAATGTA
1 TATAAATGTA
*
23047848 TGTAAATGTA
1 TATAAATGTA
*
23047858 TATAAATGTG
1 TATAAATGTA
23047868 TATA
1 TATA
23047872 CATTTTAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (10 bp):
TATAAATGTA
Found at i:23052024 original size:132 final size:132
Alignment explanation
Indices: 23051834--23052894 Score: 843
Period size: 146 Copynumber: 7.7 Consensus size: 132
23051824 TAGACAGCGA
* * * *
23051834 AGCAGATCAAATACGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAAT
1 AGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * * * * * **
23051899 TCTA-CTTCCCTGGGC-AGCAGTGGAATAGATTGAAGATTTCATATATTGTCTCCCTAAATAGTA
66 TCTATC-TCCCTAGGCGA-TAGTGGAATAGATTGGAGATTTCAGATCTTGCCTCCCTAAGCAGTA
23051962 GTGG
129 GTGG
* *
23051966 AGCAGATCAAAGATGACGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
23052031 TCTATCTCCCTAGGCGATAGTGGAATAGATTGGAGATTTCAGATCTTGCCTCCCTAAGCAGTAGT
66 TCTATCTCCCTAGGCGATAGTGGAATAGATTGGAGATTTCAGATCTTGCCTCCCTAAGCAGTAGT
23052096 GG
131 GG
23052098 AGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
23052163 TCTATCTCCCTAGGCGATAGTGGAATAGATTGGAGATTTCAGATCTTGCCTCCCTAAGCAGTAGT
66 TCTATCTCCCTAGGCGATAGTGGAATAGATTGGAGATTTCAGATCTTGCCTCCCTAAGCAGTAGT
23052228 GG
131 GG
* * * * * *
23052230 AGCAGATCGAAGATGACGGATTTTACCTCCCTGAAGTTGCAGTGGAGTATAATGAAGCCAGTAAT
1 AGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * * * * *** ** *
23052295 TCTACCTCCC--CG-GTTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGT
66 TCTATCTCCCTAGGCGATAGTG-GAA-TAGATTGGAGATTTCAGATCTTG-CCTCCC-TA-----
*
23052357 GGCGAAGTAGATCGAAG
122 AGC--AGTAG-T-G--G
* *** * *
23052374 AAAGCAAATCAAAGATGGTGGATTTTACCTCTCTGAGGTTGCAGTGGAGTACATTGAAGCCAGTA
1 --AGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
* * * * * *** ** *
23052439 ATTCTACCTCCC--CG-GTTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTG
64 ATTCTATCTCCCTAGGCGATAGTG-GAA-TAGATTGGAGATTTCAGATCTTG-CCTCCC-TA---
*
23052501 GTGGCGAAGTAGATCGAAG
122 --AGC--AGTAG-T-G--G
* *** * *
23052520 AAAGCAAATCAAAGATGGTGGATTTTACCTCCCTGAAGTTACAGTGGAGTATATTGAAGCCAGTA
1 --AGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
* * * * * *** * *
23052585 ATTCTACCTCCC--CG-GTTGGCGTGAAGTAGATCAAAGATAGT-AGATCTTGTCTTCCCATACT
64 ATTCTATCTCCCTAGGCGATAGTG-GAA-TAGATTGGAGAT-TTCAGATCTTG-CCTCCC-TA--
*
23052646 GGTGGCGAAGTAGATCGAAG
122 ---AGC--AGTAG-T-G--G
*** *
23052666 AAAGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCCAGTA
1 --AGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTA
23052731 ATTCTATCTCCCTAGGCGATAGTGGAATAGATTGGAGATTTCAGATCTTGCCTCCCTAAGCAGTA
64 ATTCTATCTCCCTAGGCGATAGTGGAATAGATTGGAGATTTCAGATCTTGCCTCCCTAAGCAGTA
23052796 GTGG
129 GTGG
***
23052800 AGCAGATCAAAGATGGTGGATTTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAA
1 AGCAGATCAAAGATGACAGA-TTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAA
* *
23052865 TTATATCTCCC-AGAGCAATAGTGGAATAGA
65 TTCTATCTCCCTAG-GCGATAGTGGAATAGA
23052895 CAGAAGAAAT
Statistics
Matches: 839, Mismatches: 64, Indels: 51
0.88 0.07 0.05
Matches are distributed among these distances:
129 4 0.00
130 4 0.00
131 18 0.02
132 341 0.41
133 72 0.09
134 1 0.00
136 1 0.00
137 1 0.00
138 7 0.01
140 7 0.01
141 1 0.00
142 1 0.00
144 1 0.00
145 2 0.00
146 353 0.42
147 17 0.02
148 4 0.00
149 4 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (132 bp):
AGCAGATCAAAGATGACAGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
TCTATCTCCCTAGGCGATAGTGGAATAGATTGGAGATTTCAGATCTTGCCTCCCTAAGCAGTAGT
GG
Found at i:23052084 original size:44 final size:44
Alignment explanation
Indices: 23052036--23052218 Score: 117
Period size: 44 Copynumber: 4.2 Consensus size: 44
23052026 GTAATTCTAT
*
23052036 CTCCCTAGGCGATAGTGGAATAGATTGGAGATTTCAGATCTTGC
1 CTCCCTAGGCGATAGTGGAATAGATTGGAGATGTCAGATCTTGC
* ** *** * * *
23052080 CTCCCTAAGC-AGTAGTGGAGCAGATCAAAGATGACAGATTTTAC
1 CTCCCTAGGCGA-TAGTGGAATAGATTGGAGATGTCAGATCTTGC
** * * * *
23052124 CTCCCTGAGGTTACAGTGGAGTACATT-GA-A-GCCAGTAATTCTAT--
1 CTCCCT-AGGCGATAGTGGAATAGATTGGAGATGTCAG--A-TCT-TGC
*
23052168 CTCCCTAGGCGATAGTGGAATAGATTGGAGATTTCAGATCTTGC
1 CTCCCTAGGCGATAGTGGAATAGATTGGAGATGTCAGATCTTGC
23052212 CTCCCTA
1 CTCCCTA
23052219 AGCAGTAGTG
Statistics
Matches: 101, Mismatches: 26, Indels: 24
0.67 0.17 0.16
Matches are distributed among these distances:
42 5 0.05
43 20 0.20
44 56 0.55
45 15 0.15
46 5 0.05
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (44 bp):
CTCCCTAGGCGATAGTGGAATAGATTGGAGATGTCAGATCTTGC
Found at i:23052503 original size:146 final size:146
Alignment explanation
Indices: 23052247--23052742 Score: 902
Period size: 146 Copynumber: 3.4 Consensus size: 146
23052237 CGAAGATGAC
* *
23052247 GGATTTTACCTCCCTGAAGTTGCAGTGGAGTATAATGAAGCCAGTAATTCTACCTCCCCGGTTGG
1 GGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCAGTAATTCTACCTCCCCGGTTGG
23052312 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
66 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
23052377 GCAAATCAAAGATGGT
131 GCAAATCAAAGATGGT
* *
23052393 GGATTTTACCTCTCTGAGGTTGCAGTGGAGTACATTGAAGCCAGTAATTCTACCTCCCCGGTTGG
1 GGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCAGTAATTCTACCTCCCCGGTTGG
23052458 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
66 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
23052523 GCAAATCAAAGATGGT
131 GCAAATCAAAGATGGT
* *
23052539 GGATTTTACCTCCCTGAAGTTACAGTGGAGTATATTGAAGCCAGTAATTCTACCTCCCCGGTTGG
1 GGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCAGTAATTCTACCTCCCCGGTTGG
*
23052604 CGTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
66 CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
*
23052669 GCAGATCAAAGATGGT
131 GCAAATCAAAGATGGT
* *
23052685 GGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCC
1 GGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCAGTAATTCTACCTCCC
23052743 TAGGCGATAG
Statistics
Matches: 336, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
146 336 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (146 bp):
GGATTTTACCTCCCTGAAGTTGCAGTGGAGTACATTGAAGCCAGTAATTCTACCTCCCCGGTTGG
CGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
GCAAATCAAAGATGGT
Found at i:23052932 original size:133 final size:132
Alignment explanation
Indices: 23052668--23052934 Score: 367
Period size: 133 Copynumber: 2.0 Consensus size: 132
23052658 GATCGAAGAA
*
23052668 AGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTGCAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* * ** * ** * * *
23052733 TCTATCTCCCTAGGCGATAGTGGAATAGATTGGAGATTTCAGATCTTGCCTCCCTAAGCAGTAGT
66 TATATCTCCCTAGGCAATAGTGGAATAGACAGAAGAAATCAGATCCTACCTCCCTAAGCAGCAGT
23052798 GG
131 GG
23052800 AGCAGATCAAAGATGGTGGATTTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAA
1 AGCAGATCAAAGATGGTGGA-TTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAA
* **
23052865 TTATATCTCCC-AGAGCAATAGTGGAATAGACAGAAGAAATCA-ATCCTATCTCCCTGAAGTTGC
65 TTATATCTCCCTAG-GCAATAGTGGAATAGACAGAAGAAATCAGATCCTACCTCCCT-AAGCAGC
23052928 AGTGG
128 AGTGG
23052933 AG
1 AG
23052935 TGGATTAAAA
Statistics
Matches: 118, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
132 32 0.27
133 86 0.73
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (132 bp):
AGCAGATCAAAGATGGTGGATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAAT
TATATCTCCCTAGGCAATAGTGGAATAGACAGAAGAAATCAGATCCTACCTCCCTAAGCAGCAGT
GG
Found at i:23074427 original size:47 final size:47
Alignment explanation
Indices: 23074375--23074466 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
23074365 ATAATTTGAC
23074375 ACCGTATATATTGTAAAA-TTATTTCAAAGGAAAAGATATTTTAGTTT
1 ACCGTATATATTGTAAAACTT-TTTCAAAGGAAAAGATATTTTAGTTT
*
23074422 ACCGTATATATTTTAAAACTTTTTCAAAGGAAAAGATATTTTAGT
1 ACCGTATATATTGTAAAACTTTTTCAAAGGAAAAGATATTTTAGT
23074467 ATCGTAAACT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
47 41 0.95
48 2 0.05
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (47 bp):
ACCGTATATATTGTAAAACTTTTTCAAAGGAAAAGATATTTTAGTTT
Found at i:23074612 original size:47 final size:47
Alignment explanation
Indices: 23074525--23074614 Score: 112
Period size: 47 Copynumber: 1.9 Consensus size: 47
23074515 ATTTCAAAAT
*
23074525 ATATTTTTAATTTTTACATTTTTATATAATTTTCAGAATTTTGTATA
1 ATATTTTTAATTTTTACATTTTTATATAATTTTCAAAATTTTGTATA
* * *
23074572 ATATTTTTAGTTTTT-GATATTTT-TATAATTTTATAAAATTTTG
1 ATATTTTTAATTTTTACAT-TTTTATATAATTTT-CAAAATTTTG
23074615 AAAAATTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
46 11 0.30
47 26 0.70
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (47 bp):
ATATTTTTAATTTTTACATTTTTATATAATTTTCAAAATTTTGTATA
Found at i:23074626 original size:21 final size:22
Alignment explanation
Indices: 23074600--23074640 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
23074590 ATTTTTATAA
23074600 TTTTATAAA-ATTTTGAAAAAT
1 TTTTATAAATATTTTGAAAAAT
23074621 TTTTATAAATATTTTGAAAA
1 TTTTATAAATATTTTGAAAA
23074641 TTTGAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (22 bp):
TTTTATAAATATTTTGAAAAAT
Found at i:23074650 original size:29 final size:29
Alignment explanation
Indices: 23074590--23074648 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
23074580 AGTTTTTGAT
*
23074590 ATTTTTATAATTTTATAAAATTTTGAAAA
1 ATTTTTATAATTTTATAAAAATTTGAAAA
*
23074619 ATTTTTATAAATATTT-TGAAAATTTGAAAA
1 ATTTTTAT-AAT-TTTATAAAAATTTGAAAA
23074649 TTATCTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 8 0.31
30 15 0.58
31 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (29 bp):
ATTTTTATAATTTTATAAAAATTTGAAAA
Found at i:23075256 original size:16 final size:16
Alignment explanation
Indices: 23075235--23075265 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
23075225 CGCTGTATTA
23075235 GAATAGAGGCGTAATG
1 GAATAGAGGCGTAATG
23075251 GAATAGAGGCGTAAT
1 GAATAGAGGCGTAAT
23075266 AGCAAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.35, T:0.19
Consensus pattern (16 bp):
GAATAGAGGCGTAATG
Found at i:23075519 original size:18 final size:17
Alignment explanation
Indices: 23075498--23075532 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23075488 TTATTATTAA
*
23075498 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
23075516 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23075533 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23075639 original size:18 final size:17
Alignment explanation
Indices: 23075616--23075652 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
23075606 AATTATTATT
23075616 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
23075632 AAATATATGATTTAATA
1 AAATATATGATTTAATA
23075649 AAAT
1 AAAT
23075653 TCTTAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:23075697 original size:120 final size:120
Alignment explanation
Indices: 23075478--23075875 Score: 634
Period size: 120 Copynumber: 3.3 Consensus size: 120
23075468 TTAATCATAT
* * *
23075478 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATTAAAATATATAATTTAATAAAATTCTTAATATT
* * * *
23075543 CAATATTCTTATATAAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
23075598 TTTGAAATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATTAAAATATATAATTTAATAAAATTCTTAATATT
* *
23075663 AAATATTCTTATATGAATTTACTAAAATTATAATATATAATAGTATAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
23075718 TTTAAAATAATAATTATTAAATATAATTTAATAAAAAAATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTAATTAAAATATATAATTTAATAAAATTCTTAATATT
23075783 AAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
66 -AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
*
23075839 TCTAAAATAATTATTATTAAATATAATTTAATATAAA
1 TTTAAAATAATTATTATTAAATATAATTTAAT-TAAA
23075876 TAAGAAAATT
Statistics
Matches: 255, Mismatches: 21, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
120 169 0.66
121 83 0.33
122 3 0.01
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (120 bp):
TTTAAAATAATTATTATTAAATATAATTTAATTAAAATATATAATTTAATAAAATTCTTAATATT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:23075732 original size:13 final size:12
Alignment explanation
Indices: 23075708--23075748 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
23075698 TATAATAGTA
23075708 TAAAATATAATT
1 TAAAATATAATT
23075720 TAAAATAATAATT
1 TAAAAT-ATAATT
*
23075733 ATTAAATATAATT
1 -TAAAATATAATT
23075746 TAA
1 TAA
23075749 TAAAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 8 0.32
13 12 0.48
14 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAAAATATAATT
Found at i:23075757 original size:18 final size:18
Alignment explanation
Indices: 23075736--23075771 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
23075726 AATAATTATT
23075736 AAATATAATTTAATAAAA
1 AAATATAATTTAATAAAA
23075754 AAATATAATTTAATAAAA
1 AAATATAATTTAATAAAA
23075772 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAATATAATTTAATAAAA
Found at i:23076274 original size:21 final size:21
Alignment explanation
Indices: 23076248--23076302 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
23076238 AACAGCGGTG
*
23076248 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGGTACTGTA
*
23076269 GCGGTGAGATTGGGTACTGTA
1 GCGGTGAGATTAGGTACTGTA
23076290 GCGGTGAGATTAG
1 GCGGTGAGATTAG
23076303 AAATAATGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.22, C:0.09, G:0.40, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGGTACTGTA
Found at i:23078337 original size:29 final size:29
Alignment explanation
Indices: 23078276--23078334 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
23078266 AATACCAAAC
*
23078276 ATAAAAAGTATCATACGTTAGTTTTACAT
1 ATAAAAAGTATCATACGTTAGTATTACAT
23078305 ATAAAAAGTAGT-ATA-GTTA-TATTACA-
1 ATAAAAAGTA-TCATACGTTAGTATTACAT
23078331 ATAA
1 ATAA
23078335 TAATTCTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 4 0.14
27 6 0.21
28 4 0.14
29 13 0.46
30 1 0.04
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.36
Consensus pattern (29 bp):
ATAAAAAGTATCATACGTTAGTATTACAT
Found at i:23080340 original size:56 final size:56
Alignment explanation
Indices: 23080261--23080375 Score: 203
Period size: 56 Copynumber: 2.1 Consensus size: 56
23080251 TTTTAATATA
* *
23080261 GGTTATGCTCGTCCAGTTGAGGGAATACATGTCCTTGTTGATATGCAAAATATGGT
1 GGTTATGCTCGTCCAGTTAAGGGAATACATGTCCTTGTTGACATGCAAAATATGGT
*
23080317 GGTTATGCTCGTCCAGTTAAGGGAATACTTGTCCTTGTTGACATGCAAAATATGGT
1 GGTTATGCTCGTCCAGTTAAGGGAATACATGTCCTTGTTGACATGCAAAATATGGT
23080373 GGT
1 GGT
23080376 GATTGAATTT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (56 bp):
GGTTATGCTCGTCCAGTTAAGGGAATACATGTCCTTGTTGACATGCAAAATATGGT
Found at i:23084515 original size:13 final size:13
Alignment explanation
Indices: 23084499--23084528 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
23084489 TAGACCAAGC
23084499 TTTTCAAAAGCAT
1 TTTTCAAAAGCAT
*
23084512 TTTTCATAAGCAT
1 TTTTCAAAAGCAT
23084525 TTTT
1 TTTT
23084529 TTGCAGCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.50
Consensus pattern (13 bp):
TTTTCAAAAGCAT
Found at i:23086420 original size:36 final size:35
Alignment explanation
Indices: 23086353--23086420 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 35
23086343 AGTTCAAAAT
* * *
23086353 AATTTTTTAATTTCTAAATATTTATAAAAATTCTA
1 AATTTTATAATTTATAAATATATATAAAAATTCTA
23086388 AATTTTATACATTTATAAATATATA-AAGAAATT
1 AATTTTATA-ATTTATAAATATATATAA-AAATT
23086421 TAATTTCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
35 10 0.36
36 18 0.64
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (35 bp):
AATTTTATAATTTATAAATATATATAAAAATTCTA
Found at i:23087231 original size:3 final size:3
Alignment explanation
Indices: 23087223--23087248 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
23087213 AATTTAACTG
23087223 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
23087249 AAAACTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:23092471 original size:30 final size:30
Alignment explanation
Indices: 23092414--23092472 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
23092404 CTATGTCTAC
* *
23092414 ATTTGCATCTGAATCTGAATATGCATCTGT
1 ATTTGCATCTGAATCTGAAAATACATCTGT
* * *
23092444 ATTTGTATCTGATTGTGAAAATACATCTG
1 ATTTGCATCTGAATCTGAAAATACATCTG
23092473 ATTCTATATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.41
Consensus pattern (30 bp):
ATTTGCATCTGAATCTGAAAATACATCTGT
Found at i:23095014 original size:13 final size:14
Alignment explanation
Indices: 23094997--23095028 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
23094987 TAATATTTTT
23094997 ATTTTTA-ATT-TA
1 ATTTTTACATTCTA
23095009 ATTTTTACATTCTA
1 ATTTTTACATTCTA
23095023 ATTTTT
1 ATTTTT
23095029 TGTTTGTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 3 0.17
14 8 0.44
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (14 bp):
ATTTTTACATTCTA
Found at i:23099376 original size:19 final size:19
Alignment explanation
Indices: 23099354--23099423 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
23099344 ACAAAATTCT
*
23099354 ATTTTTATAAAGTTTTATG
1 ATTTTTATAAAATTTTATG
*
23099373 ATTTTT-TAATTAATTTCTAATA
1 ATTTTTATAA--AATTT-T-ATG
*
23099395 ATTTTTATAAAATTTTCTG
1 ATTTTTATAAAATTTTATG
*
23099414 TTTTTTATAA
1 ATTTTTATAA
23099424 TTCTAGAATG
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
18 3 0.07
19 16 0.39
20 5 0.12
21 6 0.15
22 8 0.20
23 3 0.07
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (19 bp):
ATTTTTATAAAATTTTATG
Found at i:23099408 original size:21 final size:19
Alignment explanation
Indices: 23099354--23099410 Score: 53
Period size: 22 Copynumber: 2.8 Consensus size: 19
23099344 ACAAAATTCT
* *
23099354 ATTTTTATAAAGTTTTATG
1 ATTTTTATAAAATTTTATA
23099373 ATTTTT-TAATTAATTTCTAATA
1 ATTTTTATAA--AATTT-T-ATA
23099395 ATTTTTATAAAATTTT
1 ATTTTTATAAAATTTT
23099411 CTGTTTTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
18 3 0.10
19 6 0.19
20 5 0.16
21 6 0.19
22 8 0.26
23 3 0.10
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
ATTTTTATAAAATTTTATA
Found at i:23101692 original size:23 final size:21
Alignment explanation
Indices: 23101666--23101710 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
23101656 CACGCGGCCA
*
23101666 TGCCCCTAGCCCACATGGGCGTG
1 TGCCCC-A-CCCACACGGGCGTG
*
23101689 TGCCTCACCCACACGGGCGTG
1 TGCCCCACCCACACGGGCGTG
23101710 T
1 T
23101711 TGACCCCCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.70
22 1 0.05
23 5 0.25
ACGTcount: A:0.13, C:0.40, G:0.29, T:0.18
Consensus pattern (21 bp):
TGCCCCACCCACACGGGCGTG
Found at i:23102760 original size:69 final size:69
Alignment explanation
Indices: 23102684--23103047 Score: 586
Period size: 69 Copynumber: 5.3 Consensus size: 69
23102674 GGACAACAGT
* * * *
23102684 AACAACATTTGGACAGCATTTAACCAACATTCGGACAGCATTAGTATGCTAAAAAATGGACAGCA
1 AACAACATTCGAACAGCATTTAACCAACATTTGGGCAGCATTAGTATGCTAAAAAATGGACAGCA
23102749 TTTA
66 TTTA
*
23102753 AACAACATTCGAATAGCATTTAACCAACATTTGGGCAGCATTAGTATGCTAAAAAATGGACAGCA
1 AACAACATTCGAACAGCATTTAACCAACATTTGGGCAGCATTAGTATGCTAAAAAATGGACAGCA
23102818 TTTA
66 TTTA
*
23102822 AACAACATTCGAATAGCATTTAACCAACATTTGGGCAGCATTAGTATGCTAAAAAATGGACAGCA
1 AACAACATTCGAACAGCATTTAACCAACATTTGGGCAGCATTAGTATGCTAAAAAATGGACAGCA
23102887 TTTA
66 TTTA
*
23102891 AACAACATTCGAATAGCATTTAACCAACATTTGGGCAGCATTAGTATGCTAAAAAATGGACAGCA
1 AACAACATTCGAACAGCATTTAACCAACATTTGGGCAGCATTAGTATGCTAAAAAATGGACAGCA
23102956 TTTA
66 TTTA
* * * * *
23102960 AACAACATTCGGACAACA-TTAACCAACATTCGGACATCATTAGTATGCTAAAAAATGGACAGCA
1 AACAACATTCGAACAGCATTTAACCAACATTTGGGCAGCATTAGTATGCTAAAAAATGGACAGCA
23103024 TTTA
66 TTTA
* * *
23103028 AGCAAAATTCGGACAGCATT
1 AACAACATTCGAACAGCATT
23103048 AGTATGCTAA
Statistics
Matches: 280, Mismatches: 14, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
68 62 0.22
69 218 0.78
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (69 bp):
AACAACATTCGAACAGCATTTAACCAACATTTGGGCAGCATTAGTATGCTAAAAAATGGACAGCA
TTTA
Found at i:23102762 original size:47 final size:45
Alignment explanation
Indices: 23102693--23103097 Score: 162
Period size: 47 Copynumber: 8.8 Consensus size: 45
23102683 TAACAACATT
* *
23102693 TGGACAGCATTTAACCAACATTCGGACAGCATTAGTATGCTAAAAAA
1 TGGACAGCATTTAAACAACATTCGGACAGCATT--TATACTAAAAAA
* * * * **
23102740 TGGACAGCATTTAAACAACATTCGAATAGCATTTA-ACCAACATT
1 TGGACAGCATTTAAACAACATTCGGACAGCATTTATACTAAAAAA
* ** * * * * *
23102784 TGGGCAGCATTAGTATGCTAAAAAAT-GGACAGCATTTAAAC--AACAT
1 TGGACAGCATT--TAAAC--AACATTCGGACAGCATTTATACTAAAAAA
* * * * * *
23102830 TCGAATAGCATTTAACCAACATTTGGGCAGCATTAGTATGCTAAAAAA
1 T-GGACAGCATTTAAACAACATTCGGACAGCATT--TATACTAAAAAA
* * * * **
23102878 TGGACAGCATTTAAACAACATTCGAATAGCATTTA-ACCAACATT
1 TGGACAGCATTTAAACAACATTCGGACAGCATTTATACTAAAAAA
* ** * * * * *
23102922 TGGGCAGCATTAGTATGCTAAAAAAT-GGACAGCATTTAAAC--AACAT
1 TGGACAGCATT--TAAAC--AACATTCGGACAGCATTTATACTAAAAAA
* * * *
23102968 TCGGACAACA-TTAACCAACATTCGGACATCATTAGTATGCTAAAAAA
1 T-GGACAGCATTTAAACAACATTCGGACAGCATT--TATACTAAAAAA
* * *
23103015 TGGACAGCATTTAAGCAAAATTCGGACAGCATTAGTATGCTAAAAAAA
1 TGGACAGCATTTAAACAACATTCGGACAGCATT--TATACT-AAAAAA
* * *
23103063 TAGAAAACATTTAAACAACATTCGGACAGCATTTA
1 TGGACAGCATTTAAACAACATTCGGACAGCATTTA
23103098 ACCATCATTC
Statistics
Matches: 262, Mismatches: 72, Indels: 49
0.68 0.19 0.13
Matches are distributed among these distances:
42 4 0.02
43 13 0.05
44 40 0.15
45 10 0.04
46 25 0.10
47 120 0.46
48 50 0.19
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.25
Consensus pattern (45 bp):
TGGACAGCATTTAAACAACATTCGGACAGCATTTATACTAAAAAA
Found at i:23103001 original size:21 final size:21
Alignment explanation
Indices: 23102948--23103001 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
23102938 GCTAAAAAAT
*
23102948 GGACAGCATTTAAACAACATTC
1 GGACAACA-TTAAACAACATTC
*
23102970 GGACAACATTAACCAACATTC
1 GGACAACATTAAACAACATTC
*
23102991 GGACATCATTA
1 GGACAACATTA
23103002 GTATGCTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 22 0.76
22 7 0.24
ACGTcount: A:0.41, C:0.24, G:0.13, T:0.22
Consensus pattern (21 bp):
GGACAACATTAAACAACATTC
Found at i:23103025 original size:25 final size:26
Alignment explanation
Indices: 23102989--23103061 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 26
23102979 TAACCAACAT
*
23102989 TCGGACATCATTAGTATGCTAAAAAA
1 TCGGACAGCATTAGTATGCTAAAAAA
* *
23103015 T-GGACAGCATT--TAAGC--AAAAT
1 TCGGACAGCATTAGTATGCTAAAAAA
23103036 TCGGACAGCATTAGTATGCTAAAAAA
1 TCGGACAGCATTAGTATGCTAAAAAA
23103062 ATAGAAAACA
Statistics
Matches: 37, Mismatches: 5, Indels: 10
0.71 0.10 0.19
Matches are distributed among these distances:
21 5 0.14
22 10 0.27
23 4 0.11
24 4 0.11
25 9 0.24
26 5 0.14
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.25
Consensus pattern (26 bp):
TCGGACAGCATTAGTATGCTAAAAAA
Found at i:23103086 original size:48 final size:47
Alignment explanation
Indices: 23102974--23103095 Score: 165
Period size: 48 Copynumber: 2.6 Consensus size: 47
23102964 ACATTCGGAC
* * * *
23102974 AACA-TTAACCAACATTCGGACATCATTAGTATGCTAAAAAATGGAC
1 AACATTTAAACAACATTCGGACAGCATTAGTATGCTAAAAAATAGAA
* * *
23103020 AGCATTTAAGCAAAATTCGGACAGCATTAGTATGCTAAAAAAATAGAA
1 AACATTTAAACAACATTCGGACAGCATTAGTATGCT-AAAAAATAGAA
23103068 AACATTTAAACAACATTCGGACAGCATT
1 AACATTTAAACAACATTCGGACAGCATT
23103096 TAACCATCAT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
46 3 0.05
47 28 0.43
48 34 0.52
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (47 bp):
AACATTTAAACAACATTCGGACAGCATTAGTATGCTAAAAAATAGAA
Found at i:23103095 original size:22 final size:22
Alignment explanation
Indices: 23103068--23103117 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
23103058 AAAAATAGAA
23103068 AACATTTAAACAACATTCGGAC
1 AACATTTAAACAACATTCGGAC
* * *
23103090 AGCATTTAACCATCATTCGGAC
1 AACATTTAAACAACATTCGGAC
23103112 AACATT
1 AACATT
23103118 ATTATGCTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.24, G:0.10, T:0.26
Consensus pattern (22 bp):
AACATTTAAACAACATTCGGAC
Found at i:23103173 original size:69 final size:70
Alignment explanation
Indices: 23103016--23103163 Score: 181
Period size: 70 Copynumber: 2.1 Consensus size: 70
23103006 GCTAAAAAAT
* ** *
23103016 GGACAGCATTTAAGCAAAATTCGGACAGCATTAGTATGCTAAAAAAATAGAAAACATTTAAACAA
1 GGACAGCATTTAACCATCATTCGGACAACATTAGTATGCTAAAAAAATAGAAAACATTTAAACAA
*
23103081 CATTC
66 CATTA
* * * * * *
23103086 GGACAGCATTTAACCATCATTCGGACAACATTATTATGCT-TAAAAATGGACATCATTTAACCAA
1 GGACAGCATTTAACCATCATTCGGACAACATTAGTATGCTAAAAAAATAGAAAACATTTAAACAA
23103150 CATTA
66 CATTA
*
23103155 GGATAGCAT
1 GGACAGCAT
23103164 CTTGTCATCA
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
69 31 0.47
70 35 0.53
ACGTcount: A:0.43, C:0.18, G:0.14, T:0.26
Consensus pattern (70 bp):
GGACAGCATTTAACCATCATTCGGACAACATTAGTATGCTAAAAAAATAGAAAACATTTAAACAA
CATTA
Found at i:23105026 original size:20 final size:21
Alignment explanation
Indices: 23104988--23105027 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
23104978 TCACACATAT
*
23104988 CAAAAAAAATATTGTAAATAC
1 CAAAAAAAATATTGAAAATAC
*
23105009 CAAAAATAATATT-AAAATA
1 CAAAAAAAATATTGAAAATA
23105028 ATTTTATGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.65, C:0.07, G:0.03, T:0.25
Consensus pattern (21 bp):
CAAAAAAAATATTGAAAATAC
Found at i:23111655 original size:15 final size:15
Alignment explanation
Indices: 23111634--23111674 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
23111624 AAATATATTT
*
23111634 ATAAATATTAATTAA
1 ATAAATATAAATTAA
*
23111649 TTAAATATAAATTAA
1 ATAAATATAAATTAA
23111664 ATAAAT-TAAAT
1 ATAAATATAAAT
23111675 GGTGCCAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 5 0.22
15 18 0.78
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
ATAAATATAAATTAA
Found at i:23114470 original size:12 final size:12
Alignment explanation
Indices: 23114453--23114479 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
23114443 GCTACGCAGA
23114453 TGGGGAATTTTT
1 TGGGGAATTTTT
23114465 TGGGGAATTTTT
1 TGGGGAATTTTT
23114477 TGG
1 TGG
23114480 AATATGACGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.37, T:0.48
Consensus pattern (12 bp):
TGGGGAATTTTT
Found at i:23120638 original size:40 final size:40
Alignment explanation
Indices: 23120593--23120669 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
23120583 AGGTGCCAAT
** **
23120593 TTACTTCGGTTTAGCCGATGAGACACTGGGTGTCAAATTA
1 TTACTTCGAATTAGCCGATGAGACACTAAGTGTCAAATTA
* *
23120633 TTACTTCGAATTATCCGATGAGGCACTAAGTGTCAAA
1 TTACTTCGAATTAGCCGATGAGACACTAAGTGTCAAA
23120670 CTGGTGTGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (40 bp):
TTACTTCGAATTAGCCGATGAGACACTAAGTGTCAAATTA
Found at i:23125420 original size:2 final size:2
Alignment explanation
Indices: 23125413--23125437 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
23125403 GGGGGTAACT
23125413 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
23125438 ATATTTATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:23128751 original size:159 final size:159
Alignment explanation
Indices: 23128462--23128780 Score: 593
Period size: 159 Copynumber: 2.0 Consensus size: 159
23128452 CGAAGAGTAC
23128462 AAAAGATGGAGATAAAACTAAACCCCAAAAACCCGAAAACAAAGAACCCTCAAAACGTAAACACA
1 AAAAGATGGAGATAAAACTAAACCCCAAAAACCCGAAAACAAAGAACCCTCAAAACGTAAACACA
* * *
23128527 AAATTCTCTAAATGTGTTATGATTTCTAATATCTAATGGGTGTATTTACTAAGGTTGTAAAAGAG
66 AAATTCTCTAAATATGTTATGATTTCTAATATCTAATAGGTGTATTTACTAAAGTTGTAAAAGAG
23128592 CCTATTTATAGGCTAAATTCATATGTCAA
131 CCTATTTATAGGCTAAATTCATATGTCAA
* *
23128621 AAAAGATGGAGATAAAACTAAACCCCAAAAACTCGAAAACAAAGAACCCTCAAAAGGTAAACACA
1 AAAAGATGGAGATAAAACTAAACCCCAAAAACCCGAAAACAAAGAACCCTCAAAACGTAAACACA
23128686 AAATTCTCTAAATATGTTATGATTTCTAATATCTAATAGGTGTATTTACTAAAGTTGTAAAAGAG
66 AAATTCTCTAAATATGTTATGATTTCTAATATCTAATAGGTGTATTTACTAAAGTTGTAAAAGAG
23128751 CCTATTTATAGGCTAAATTCATATGTCAA
131 CCTATTTATAGGCTAAATTCATATGTCAA
23128780 A
1 A
23128781 TAATAATAAA
Statistics
Matches: 155, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
159 155 1.00
ACGTcount: A:0.45, C:0.16, G:0.13, T:0.27
Consensus pattern (159 bp):
AAAAGATGGAGATAAAACTAAACCCCAAAAACCCGAAAACAAAGAACCCTCAAAACGTAAACACA
AAATTCTCTAAATATGTTATGATTTCTAATATCTAATAGGTGTATTTACTAAAGTTGTAAAAGAG
CCTATTTATAGGCTAAATTCATATGTCAA
Found at i:23132343 original size:55 final size:55
Alignment explanation
Indices: 23132259--23132371 Score: 208
Period size: 55 Copynumber: 2.1 Consensus size: 55
23132249 TCTGATAATT
*
23132259 TACTAATAGTGACCTTATACCGTTTGGGCCACCGGTGATGGACGTCCATTCTTCC
1 TACTAATAGTGACCTTATACCGTTTGGGCCACCGGTGATGGACGTCCATTCCTCC
*
23132314 TACTAATAGTGACCTTATACGGTTTGGGCCACCGGTGATGGACGTCCATTCCTCC
1 TACTAATAGTGACCTTATACCGTTTGGGCCACCGGTGATGGACGTCCATTCCTCC
23132369 TAC
1 TAC
23132372 GAATCTCCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.30
Consensus pattern (55 bp):
TACTAATAGTGACCTTATACCGTTTGGGCCACCGGTGATGGACGTCCATTCCTCC
Found at i:23137519 original size:12 final size:12
Alignment explanation
Indices: 23137502--23137526 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23137492 TCATGAGGAC
23137502 CAATCTCAACCT
1 CAATCTCAACCT
23137514 CAATCTCAACCT
1 CAATCTCAACCT
23137526 C
1 C
23137527 GTCAAGGCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.44, G:0.00, T:0.24
Consensus pattern (12 bp):
CAATCTCAACCT
Found at i:23139572 original size:3 final size:3
Alignment explanation
Indices: 23139564--23139590 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
23139554 ACTATTAAGG
23139564 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
23139591 AGTTTGGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23145033 original size:50 final size:50
Alignment explanation
Indices: 23144958--23145057 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
23144948 GGCCGAGAAC
23144958 GAGGGTGATAATTCGTTGCTATCCACATAATCCGATTGAAGGTGGAGTTA
1 GAGGGTGATAATTCGTTGCTATCCACATAATCCGATTGAAGGTGGAGTTA
23145008 GAGGGTGATAATTCGTTGCTATCCACATAATCCGATTGAAGGTGGAGTTA
1 GAGGGTGATAATTCGTTGCTATCCACATAATCCGATTGAAGGTGGAGTTA
23145058 TGTTAGATGT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (50 bp):
GAGGGTGATAATTCGTTGCTATCCACATAATCCGATTGAAGGTGGAGTTA
Found at i:23146771 original size:290 final size:290
Alignment explanation
Indices: 23146238--23146816 Score: 1059
Period size: 290 Copynumber: 2.0 Consensus size: 290
23146228 TCTTTAGGAC
* * *
23146238 TCGAATAATTCGAAGAGTGTTTGATGCAAGGTTGGTCGTAGAAGGTTACAGTCAGGTGGAGAGAG
1 TCGAATAATTCGAAGAGTGTTTGAGGCAAGGTTGGTCGTAGAAGGTAAAAGTCAGGTGGAGAGAG
23146303 TTGATGTTTTCTCTCTTGTTCGGGTATTTACTGGCCCTTGTTACATTATACAATTTTGATTTGAA
66 TTGATGTTTTCTCTCTTGTTCGGGTATTTACTGGCCCTTGTTACATTATACAATTTTGATTTGAA
23146368 GATTGAGAGTCTTTCATTTCCCAAGTTCGAGCACGATTTAGACTTGGTCGACATTCAGCAAGATT
131 GATTGAGAGTCTTTCATTTCCCAAGTTCGAGCACGATTTAGACTTGGTCGACATTCAGCAAGATT
*
23146433 TGAGTTTGGCCCGTGATGGGGAATGAAAATGGTGGCGTGATAAATATGAGTCAAGGTGGAGATTT
196 TGAGTTTGGCCCGTGATGGGGAATGAAAATGGGGGCGTGATAAATATGAGTCAAGGTGGAGATTT
* *
23146498 TTGGGGTGTGCCTCATATTTACGAAGAAAT
261 GTAGGGTGTGCCTCATATTTACGAAGAAAT
* * *
23146528 TCGAATGATTCGCAGAGTGTTTGAGGCATGGTTGGTCGTAGAAGGTAAAAGTCAGGTGGAGAGAG
1 TCGAATAATTCGAAGAGTGTTTGAGGCAAGGTTGGTCGTAGAAGGTAAAAGTCAGGTGGAGAGAG
23146593 TTGATGTTTTCTCTCTTGTTCGGGTATTTACTGGCCCTTGTTACATTATACAATTTTGATTTGAA
66 TTGATGTTTTCTCTCTTGTTCGGGTATTTACTGGCCCTTGTTACATTATACAATTTTGATTTGAA
23146658 GATTGAGAGTCTTTCATTTCCCAAGTTCGAGCACGATTTAGACTTGGTCGACATTCAGCAAGATT
131 GATTGAGAGTCTTTCATTTCCCAAGTTCGAGCACGATTTAGACTTGGTCGACATTCAGCAAGATT
23146723 TGAGTTTGGCCCGTGATGGGGAATGAAAATGGGGGCGTGATAAATATGAGTCAAGGTGGAGATTT
196 TGAGTTTGGCCCGTGATGGGGAATGAAAATGGGGGCGTGATAAATATGAGTCAAGGTGGAGATTT
**
23146788 GTAGGGTGTGCCTCATATTTTTGAAGAAA
261 GTAGGGTGTGCCTCATATTTACGAAGAAA
23146817 CAGATGGCGA
Statistics
Matches: 278, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
290 278 1.00
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (290 bp):
TCGAATAATTCGAAGAGTGTTTGAGGCAAGGTTGGTCGTAGAAGGTAAAAGTCAGGTGGAGAGAG
TTGATGTTTTCTCTCTTGTTCGGGTATTTACTGGCCCTTGTTACATTATACAATTTTGATTTGAA
GATTGAGAGTCTTTCATTTCCCAAGTTCGAGCACGATTTAGACTTGGTCGACATTCAGCAAGATT
TGAGTTTGGCCCGTGATGGGGAATGAAAATGGGGGCGTGATAAATATGAGTCAAGGTGGAGATTT
GTAGGGTGTGCCTCATATTTACGAAGAAAT
Found at i:23150382 original size:318 final size:318
Alignment explanation
Indices: 23149798--23150432 Score: 1182
Period size: 318 Copynumber: 2.0 Consensus size: 318
23149788 ACATAATCCA
*
23149798 ATTGAAGGTGGAGTTGTGTTAGATGTCAGGCATGTACCTGATTTAGAGCAGAATCTCATCCTCTT
1 ATTGAAGGTGGAGTTGTGTTAGATGTCAGGCATGTACCTGATTTAGAGAAGAATCTCATCCTCTT
*
23149863 TTTGGTCTTTAGGACTCGAATGATATGTAGAGTGTTTGAGGCAAGGTTAGTCATAGAAGGTTACA
66 TTTGGTCTTTAGGACTCGAATGATATGCAGAGTGTTTGAGGCAAGGTTAGTCATAGAAGGTTACA
23149928 GTCAGGTGGAGAGAGTTGATGTTTTCACTCTTGTTTGGGTGTTACTGGCCCTTGTTAAAATATAC
131 GTCAGGTGGAGAGAGTTGATGTTTTCACTCTTGTTTGGGTGTTACTGGCCCTTGTTAAAATATAC
23149993 GATTTTGATTTAAAGATTGAGAGTCTTTTATTTCCGAAGTCCGAACACGATTTAGACTTGGTCGA
196 GATTTTGATTTAAAGATTGAGAGTCTTTTATTTCCGAAGTCCGAACACGATTTAGACTTGGTCGA
23150058 CATTCTGCAAGATTCGAGTTTGGCCAGCGATGGGGCATGAAAAATCAGGCATGATAAG
261 CATTCTGCAAGATTCGAGTTTGGCCAGCGATGGGGCATGAAAAATCAGGCATGATAAG
* *
23150116 ATTGAATGTGGAGTTGTGTTAGATGTCAGGCATGTACCTGATTTGGAGAAGAATCTCATCCTCTT
1 ATTGAAGGTGGAGTTGTGTTAGATGTCAGGCATGTACCTGATTTAGAGAAGAATCTCATCCTCTT
** * *
23150181 TTTTTTCTTTAGGACTCGAATGAT-TCGCAGAGTGTTTGAGGCAATGTTAGTCGTAGAAGGTTAC
66 TTTGGTCTTTAGGACTCGAATGATAT-GCAGAGTGTTTGAGGCAAGGTTAGTCATAGAAGGTTAC
23150245 AGTCAGGTGGAGAGAGTTGATGTTTTCACTCTTGTTTGGGTGTTACTGGCCCTTGTTAAAATATA
130 AGTCAGGTGGAGAGAGTTGATGTTTTCACTCTTGTTTGGGTGTTACTGGCCCTTGTTAAAATATA
23150310 CGATTTTGATTTAAAGATTGAGAGTCTTTTATTTCCGAAGTCCGAACACGATTTAGACTTGGTCG
195 CGATTTTGATTTAAAGATTGAGAGTCTTTTATTTCCGAAGTCCGAACACGATTTAGACTTGGTCG
23150375 ACATTCTGCAAGATTCGAGTTTGGCCAGCGATGGGGCATGAAAAATCAGGCATGATAA
260 ACATTCTGCAAGATTCGAGTTTGGCCAGCGATGGGGCATGAAAAATCAGGCATGATAA
23150433 ATATGAGTCA
Statistics
Matches: 308, Mismatches: 8, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
317 1 0.00
318 307 1.00
ACGTcount: A:0.26, C:0.14, G:0.26, T:0.34
Consensus pattern (318 bp):
ATTGAAGGTGGAGTTGTGTTAGATGTCAGGCATGTACCTGATTTAGAGAAGAATCTCATCCTCTT
TTTGGTCTTTAGGACTCGAATGATATGCAGAGTGTTTGAGGCAAGGTTAGTCATAGAAGGTTACA
GTCAGGTGGAGAGAGTTGATGTTTTCACTCTTGTTTGGGTGTTACTGGCCCTTGTTAAAATATAC
GATTTTGATTTAAAGATTGAGAGTCTTTTATTTCCGAAGTCCGAACACGATTTAGACTTGGTCGA
CATTCTGCAAGATTCGAGTTTGGCCAGCGATGGGGCATGAAAAATCAGGCATGATAAG
Found at i:23151005 original size:79 final size:79
Alignment explanation
Indices: 23150874--23151028 Score: 211
Period size: 79 Copynumber: 2.0 Consensus size: 79
23150864 GTAGAAGTTG
* * ** * *
23150874 TACATTTAGGCTATTTTCTCCATATTGTACTCTTGCTTGTTGACTTATTTAGTGAAAAGCTGATA
1 TACATTTAGGCTATTTTCTCCATATTATACTATCACTTGTTGACTTATTTAGTGAAAAACCGATA
*
23150939 CCTTCTTTGCCCAT
66 CCTCCTTTGCCCAT
* * * *
23150953 TACATTTAGGTTATTTTCTCCATCTTATACTATCATTTGTTTACTTATTTAGTGAAAAACCGATA
1 TACATTTAGGCTATTTTCTCCATATTATACTATCACTTGTTGACTTATTTAGTGAAAAACCGATA
23151018 CCTCCTTTGCC
66 CCTCCTTTGCC
23151029 TGTGATTTTT
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
79 65 1.00
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.45
Consensus pattern (79 bp):
TACATTTAGGCTATTTTCTCCATATTATACTATCACTTGTTGACTTATTTAGTGAAAAACCGATA
CCTCCTTTGCCCAT
Found at i:23151945 original size:35 final size:37
Alignment explanation
Indices: 23151889--23151999 Score: 99
Period size: 35 Copynumber: 3.1 Consensus size: 37
23151879 GTCGTAGGCT
*
23151889 TTTTCTTTGAAGG-CGATAAGATGTAGTCGCATATGAG
1 TTTTCTTTG-AGGCCAATAAGATGTAGTCGCATATGAG
* * **
23151926 TTTT-TTT-A-GCCAATCAAGATATAGTCG--TAGGCT
1 TTTTCTTTGAGGCCAAT-AAGATGTAGTCGCATATGAG
* *
23151959 TTTTCTTTGAGGGCGATAAGATGTAGTCGCATATGAG
1 TTTTCTTTGAGGCCAATAAGATGTAGTCGCATATGAG
23151996 TTTT
1 TTTT
23152000 GGTGAGAGTT
Statistics
Matches: 56, Mismatches: 11, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
33 8 0.14
34 7 0.12
35 23 0.41
36 7 0.12
37 11 0.20
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.39
Consensus pattern (37 bp):
TTTTCTTTGAGGCCAATAAGATGTAGTCGCATATGAG
Found at i:23151974 original size:70 final size:71
Alignment explanation
Indices: 23151854--23152000 Score: 260
Period size: 70 Copynumber: 2.1 Consensus size: 71
23151844 TTGTATCCCT
* *
23151854 GTTTTGTTTAGCCAGTCAAGGTATAGTCGTAGGCTTTTTCTTTGAAGGCGATAAGATGTAGTCGC
1 GTTTTGTTTAGCCAATCAAGATATAGTCGTAGGCTTTTTCTTTGAAGGCGATAAGATGTAGTCGC
23151919 ATATGA
66 ATATGA
*
23151925 GTTTT-TTTAGCCAATCAAGATATAGTCGTAGGCTTTTTCTTTGAGGGCGATAAGATGTAGTCGC
1 GTTTTGTTTAGCCAATCAAGATATAGTCGTAGGCTTTTTCTTTGAAGGCGATAAGATGTAGTCGC
23151989 ATATGA
66 ATATGA
23151995 GTTTTG
1 GTTTTG
23152001 GTGAGAGTTT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
70 67 0.93
71 5 0.07
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.38
Consensus pattern (71 bp):
GTTTTGTTTAGCCAATCAAGATATAGTCGTAGGCTTTTTCTTTGAAGGCGATAAGATGTAGTCGC
ATATGA
Found at i:23152798 original size:17 final size:16
Alignment explanation
Indices: 23152773--23152806 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
23152763 TTTTTTCCGC
23152773 AAAAAAAAAGAAAAAG
1 AAAAAAAAAGAAAAAG
*
23152789 AAAAAGAAAAGAAGAAG
1 AAAAA-AAAAGAAAAAG
23152806 A
1 A
23152807 TATTTTTGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:23157919 original size:6 final size:6
Alignment explanation
Indices: 23157904--23157955 Score: 56
Period size: 6 Copynumber: 8.8 Consensus size: 6
23157894 TCAGTGGAGG
23157904 CAAAAA -AAAAA CAAAAA -AAATAA -AAACAA CAAAAA CAAAAA CAAAAA
1 CAAAAA CAAAAA CAAAAA CAAA-AA CAAA-AA CAAAAA CAAAAA CAAAAA
*
23157951 TAAAA
1 CAAAA
23157956 GAAAAAACCT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 8 0.20
6 30 0.73
7 3 0.07
ACGTcount: A:0.85, C:0.12, G:0.00, T:0.04
Consensus pattern (6 bp):
CAAAAA
Found at i:23157928 original size:15 final size:14
Alignment explanation
Indices: 23157905--23157960 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 14
23157895 CAGTGGAGGC
23157905 AAAAAAAAAACAAA
1 AAAAAAAAAACAAA
23157919 AAAAATAAAAACAACA
1 AAAAA-AAAAACAA-A
*
23157935 AAAACAAAAACAAA
1 AAAAAAAAAACAAA
23157949 AATAAAAGAAAA
1 AA-AAAA-AAAA
23157961 AACCTCTACC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
14 8 0.22
15 19 0.53
16 9 0.25
ACGTcount: A:0.86, C:0.09, G:0.02, T:0.04
Consensus pattern (14 bp):
AAAAAAAAAACAAA
Found at i:23158415 original size:10 final size:10
Alignment explanation
Indices: 23158397--23158455 Score: 50
Period size: 12 Copynumber: 5.7 Consensus size: 10
23158387 AACTTCACTT
23158397 GAAAAAAAAA
1 GAAAAAAAAA
*
23158407 GAAACAAAAA
1 GAAAAAAAAA
*
23158417 G--AAAAAAG
1 GAAAAAAAAA
23158425 GAAAAGAAAAA
1 GAAAA-AAAAA
23158436 CGAAAAAGAAAA
1 -GAAAAA-AAAA
23158448 GAGAAAAA
1 GA-AAAAA
23158456 GGAGAGGCCA
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
8 6 0.15
10 12 0.31
11 8 0.21
12 13 0.33
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:23158429 original size:13 final size:13
Alignment explanation
Indices: 23158397--23158456 Score: 66
Period size: 13 Copynumber: 4.5 Consensus size: 13
23158387 AACTTCACTT
*
23158397 GAAAAAAAAAGAAA
1 GAAAAAGAAA-AAA
*
23158411 CAAAAAGAAAAAA
1 GAAAAAGAAAAAA
* *
23158424 GGAAAAGAAAAAC
1 GAAAAAGAAAAAA
*
23158437 GAAAAAGAAAAGA
1 GAAAAAGAAAAAA
23158450 GAAAAAG
1 GAAAAAG
23158457 GAGAGGCCAA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
13 30 0.79
14 8 0.21
ACGTcount: A:0.78, C:0.03, G:0.18, T:0.00
Consensus pattern (13 bp):
GAAAAAGAAAAAA
Found at i:23158446 original size:18 final size:18
Alignment explanation
Indices: 23158401--23158454 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
23158391 TCACTTGAAA
*
23158401 AAAAAAG-AAACAAAAAG
1 AAAAAAGAAAAGAAAAAG
23158418 AAAAAAGGAAAAGAAAAACG
1 AAAAAA-GAAAAGAAAAA-G
23158438 -AAAAAGAAAAGAGAAAA
1 AAAAAAGAAAAGA-AAAA
23158455 AGGAGAGGCC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 6 0.19
18 8 0.25
19 17 0.53
20 1 0.03
ACGTcount: A:0.80, C:0.04, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAAAAGAAAAGAAAAAG
Found at i:23159564 original size:87 final size:87
Alignment explanation
Indices: 23159418--23160523 Score: 1474
Period size: 87 Copynumber: 12.8 Consensus size: 87
23159408 CAAATCAAAG
* * *
23159418 AAACAAAACCTTGCCTCCATCAGTTGCAGTGGAGCTGGTCAAAGATAGCAGATCTTGCCTTCCTG
1 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
23159483 CATTAACAGCGAAGCAGATCGA
66 CATTAACAGCGAAGCAGATCGA
*
23159505 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCAG
1 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
23159570 CATTAACAGCGAAGCAGATCGA
66 CATTAACAGCGAAGCAGATCGA
* * * *
23159592 AAACAAAACCTTTCCTCCATCGGTTGCAGTGGAGTTGGTCAAAGATAGCAGATCTTGCCTTCCTG
1 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
* * * * *
23159657 TACTGACGGTGAAGCAGATCGA
66 CATTAACAGCGAAGCAGATCGA
* * * * * **
23159679 AGAAGCCAATC-TTGCCT--TTCTGTACTGACAGTGGAGCAGACTAAAGATAGCAGATCTTGCCT
1 A-AA-CAAAACATTGCCTCCATCGGT--TG-CAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
23159741 TCCTGCATTAACA--G-A--AGA-C--
61 TCCTGCATTAACAGCGAAGCAGATCGA
* * * * * * ** *
23159760 --AC-AAGCCTTGCCTCCCTCGTTTGTAGTGGAGCTGGTTGAAGATAATAGATCTTGCCTCCCTG
1 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
* *
23159822 CATTGACAGCGAAGCAGGTCGA
66 CATTAACAGCGAAGCAGATCGA
* *
23159844 AAACACAAACCTTGCCTCTC-TCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCC
1 AAACA-AAACATTGCCTC-CATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCC
*
23159908 AGCATTAACAGCGAAGCAGATCGA
64 TGCATTAACAGCGAAGCAGATCGA
*
23159932 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCAG
1 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
23159997 CATTAACAGCGAAGCAGATCGA
66 CATTAACAGCGAAGCAGATCGA
*
23160019 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCAG
1 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
23160084 CATTAACAGCGAAGCAGATCGA
66 CATTAACAGCGAAGCAGATCGA
*
23160106 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCAG
1 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
23160171 CATTAACAGCGAAGCAGATCGA
66 CATTAACAGCGAAGCAGATCGA
*
23160193 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCAG
1 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
23160258 CATTAACAGCGAAGCAGATCGA
66 CATTAACAGCGAAGCAGATCGA
*
23160280 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGTCTTCCTG
1 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
* *
23160345 TATTAATAGCGAAGCAGATCGA
66 CATTAACAGCGAAGCAGATCGA
* * *
23160367 AAACAAAACCTTGCCTCCATCGGTTGCAGTGGAGTTGGTTAAAGATAGCAGATCTTTCCTTCCTG
1 AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
* * * * *
23160432 TACTGACGGTGAAGCAGATCGA
66 CATTAACAGCGAAGCAGATCGA
* * * * * **
23160454 AGAAGCCAATC-TTGCCT--TTCTGTACTGACAGTGGAGCAGACTAAAGATAGCAGATCTTGCCT
1 A-AA-CAAAACATTGCCTCCATCGGT--TG-CAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
23160516 TCCTGCAT
61 TCCTGCAT
23160524 CGACAGCGGG
Statistics
Matches: 915, Mismatches: 77, Indels: 52
0.88 0.07 0.05
Matches are distributed among these distances:
76 41 0.04
77 9 0.01
78 2 0.00
79 4 0.00
81 2 0.00
82 1 0.00
83 1 0.00
84 3 0.00
86 12 0.01
87 663 0.72
88 95 0.10
89 82 0.09
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (87 bp):
AAACAAAACATTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTG
CATTAACAGCGAAGCAGATCGA
Found at i:23160529 original size:45 final size:44
Alignment explanation
Indices: 23160406--23160520 Score: 144
Period size: 44 Copynumber: 2.6 Consensus size: 44
23160396 TGGAGTTGGT
* * *
23160406 TAAAGATAGCAGATCTTTCCTTCCTGTACTGACGGTGAAGCAGA
1 TAAAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGGAGCAGA
* *
23160450 TCGAAGA-AGCCA-ATCTTGCCTTTCTGTACTGACAGTGGAGCAGA
1 T-AAAGATAG-CAGATCTTGCCTTCCTGTACTGACAGTGGAGCAGA
23160494 CTAAAGATAGCAGATCTTGCCTTCCTG
1 -TAAAGATAGCAGATCTTGCCTTCCTG
23160521 CATCGACAGC
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
44 37 0.63
45 22 0.37
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (44 bp):
TAAAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGGAGCAGA
Found at i:23166401 original size:26 final size:25
Alignment explanation
Indices: 23166348--23166400 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 25
23166338 TATTTACTAC
23166348 ATTTATTCTAATATTTTAAAATGAAA
1 ATTTATTCTAATATTTTAAAAT-AAA
23166374 ATTTATTTACTAA-ATTTATAAAATAAA
1 ATTTA-TT-CTAATATTT-TAAAATAAA
23166401 TAAATCATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 5 0.21
27 9 0.38
28 10 0.42
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (25 bp):
ATTTATTCTAATATTTTAAAATAAA
Found at i:23167247 original size:7 final size:7
Alignment explanation
Indices: 23167235--23167259 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
23167225 TTTCACCCAT
23167235 GCTTAAA
1 GCTTAAA
23167242 GCTTAAA
1 GCTTAAA
23167249 GCTTAAA
1 GCTTAAA
23167256 GCTT
1 GCTT
23167260 GGCAAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (7 bp):
GCTTAAA
Found at i:23167337 original size:6 final size:6
Alignment explanation
Indices: 23167326--23167354 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
23167316 AGTTTCACAA
23167326 AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
23167355 ACCCTTAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:23170144 original size:18 final size:18
Alignment explanation
Indices: 23170121--23170156 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
23170111 GAAATTTATA
23170121 TTAAAAT-CCTAGAAGGAT
1 TTAAAATCCCTA-AAGGAT
23170139 TTAAAATCCCTAAAGGAT
1 TTAAAATCCCTAAAGGAT
23170157 GTAGAGTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (18 bp):
TTAAAATCCCTAAAGGAT
Found at i:23179909 original size:8 final size:8
Alignment explanation
Indices: 23179898--23179961 Score: 62
Period size: 8 Copynumber: 8.1 Consensus size: 8
23179888 CATAAAAATC
23179898 TAATAATA
1 TAATAATA
23179906 TAATAATA
1 TAATAATA
* *
23179914 TTAACAACA
1 -TAATAATA
23179923 TAATAATTA
1 TAATAA-TA
*
23179932 TATTAAT-
1 TAATAATA
23179939 TAA-AATA
1 TAATAATA
23179946 -AATAATA
1 TAATAATA
23179953 TAATAATA
1 TAATAATA
23179961 T
1 T
23179962 TTTCTTACCA
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
6 5 0.11
7 6 0.13
8 22 0.49
9 12 0.27
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (8 bp):
TAATAATA
Found at i:23185497 original size:27 final size:26
Alignment explanation
Indices: 23185467--23185517 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
23185457 ATGAAATTCT
*
23185467 TACAAA-CAATATGATTAATTAACAATA
1 TACAAAGCAA-ATGATGAA-TAACAATA
23185494 TACAAAGCAAATGATGAATAACAA
1 TACAAAGCAAATGATGAATAACAA
23185518 ATTAATTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 6 0.27
27 13 0.59
28 3 0.14
ACGTcount: A:0.57, C:0.12, G:0.08, T:0.24
Consensus pattern (26 bp):
TACAAAGCAAATGATGAATAACAATA
Found at i:23185980 original size:50 final size:50
Alignment explanation
Indices: 23185918--23186017 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
23185908 TAATCAACCA
23185918 ATTTTAAATCGAGGCTTAAATAAAATTAAAACAATAAGAGGAAACAAAAT
1 ATTTTAAATCGAGGCTTAAATAAAATTAAAACAATAAGAGGAAACAAAAT
* *
23185968 ATTTTAAGTCGAGGCTTAAATAAAATTAAAACAATAAGAGGAAACGAAAT
1 ATTTTAAATCGAGGCTTAAATAAAATTAAAACAATAAGAGGAAACAAAAT
23186018 TAAATAAAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.54, C:0.08, G:0.14, T:0.24
Consensus pattern (50 bp):
ATTTTAAATCGAGGCTTAAATAAAATTAAAACAATAAGAGGAAACAAAAT
Found at i:23187640 original size:44 final size:43
Alignment explanation
Indices: 23187591--23187945 Score: 202
Period size: 44 Copynumber: 7.9 Consensus size: 43
23187581 CACCGCAACG
* *
23187591 TCAGGGAGATAGGATTCGTAGCTTCAATCTGCTCCGCTGTAATC
1 TCAGGGAGATAAGATTC-TAGCTTCAATCTGCTCCACTGTAATC
* * * * * *
23187635 TCAGGGAGATAAGA-CCTA-ATGCGATCTACTCTACTGTAA-C
1 TCAGGGAGATAAGATTCTAGCTTCAATCTGCTCCACTGTAATC
* * * *
23187675 TTCAGAGAGATAAGATCTTTTA-TTTTAAT-TCGCTCCACTGTAATC
1 -TCAGGGAGATAAGA--TTCTAGCTTCAATCT-GCTCCACTGTAATC
*
23187720 TCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATC
1 TCAGGGAGATAAGATT-CTAGCTTCAATCTGCTCCACTGTAATC
*
23187764 TCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAA-C
1 TCAGGGAGATAAGA-TTCTAGCTTCAATC---T--G--CT-C-C-ACTGTAATC
* * * * * * *
23187817 TTCAGAGAGATAAGATCCTTTA-TTTTAATCCGTTCCACTGTAATT
1 -TCAGGGAGATAAGAT--TCTAGCTTCAATCTGCTCCACTGTAATC
* * * * **
23187862 TCAGGGAGATAGGATTATTAGTTTCAATTTGCTCTGCTGTAATC
1 TCAGGGAGATAAGATT-CTAGCTTCAATCTGCTCCACTGTAATC
* *
23187906 TCAGGGAGATAAGATTTCTGGCTTCGATCTGCTCCACTGT
1 TCAGGGAGATAAGA-TTCTAGCTTCAATCTGCTCCACTGT
23187946 TGTTTAGGGA
Statistics
Matches: 235, Mismatches: 49, Indels: 54
0.70 0.14 0.16
Matches are distributed among these distances:
40 1 0.00
41 28 0.12
42 5 0.02
43 7 0.03
44 149 0.63
45 7 0.03
46 1 0.00
47 2 0.01
49 2 0.01
51 2 0.01
52 1 0.00
53 3 0.01
54 25 0.11
55 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (43 bp):
TCAGGGAGATAAGATTCTAGCTTCAATCTGCTCCACTGTAATC
Found at i:23187909 original size:142 final size:142
Alignment explanation
Indices: 23187653--23187936 Score: 478
Period size: 142 Copynumber: 2.0 Consensus size: 142
23187643 ATAAGACCTA
* *
23187653 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATTCGCTCCACTGTAA
1 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA
23187718 TCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCT
66 TCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCT
23187783 GGCTTCAATCTG
131 GGCTTCAATCTG
*
23187795 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAA
1 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA
* * * * * *
23187860 TTTCAGGGAGATAGGATTATTAGTTTCAATTTGCTCTGCTGTAATCTCAGGGAGATAAGATTTCT
66 TCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCT
*
23187925 GGCTTCGATCTG
131 GGCTTCAATCTG
23187937 CTCCACTGTT
Statistics
Matches: 132, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
142 132 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (142 bp):
ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAA
TCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCT
GGCTTCAATCTG
Found at i:23189256 original size:12 final size:12
Alignment explanation
Indices: 23189239--23189268 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
23189229 TTCATCATCA
23189239 TCATTTATTTAT
1 TCATTTATTTAT
23189251 TCATTTATTTAT
1 TCATTTATTTAT
*
23189263 TTATTT
1 TCATTT
23189269 TAGGAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (12 bp):
TCATTTATTTAT
Found at i:23196565 original size:19 final size:19
Alignment explanation
Indices: 23196541--23196584 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
23196531 ATAATCTTTA
* *
23196541 AATGCATATG-ATGACATG
1 AATGCAGATGCATGAAATG
23196559 TAATGCAGATGCATGAAATG
1 -AATGCAGATGCATGAAATG
23196579 AATGCA
1 AATGCA
23196585 AAAAAGAGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.25
Consensus pattern (19 bp):
AATGCAGATGCATGAAATG
Found at i:23217092 original size:30 final size:30
Alignment explanation
Indices: 23217049--23217222 Score: 321
Period size: 30 Copynumber: 5.8 Consensus size: 30
23217039 TCCATATTTA
* *
23217049 TGGAAAATCAAAGATATGGGTATCAAATAA
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
23217079 TAGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
23217109 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
23217139 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
23217169 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
23217199 TGGAAAGTCAAAGATATGGGTATC
1 TGGAAAGTCAAAGATATGGGTATC
23217223 GGGATATTGG
Statistics
Matches: 140, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 140 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:23229707 original size:37 final size:35
Alignment explanation
Indices: 23229666--23229835 Score: 100
Period size: 37 Copynumber: 4.7 Consensus size: 35
23229656 TAGTATTATA
*
23229666 TATTATGATTTTAGTAAATTCATATAAGAATATTGAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* * *
23229703 TATTAAGAATTTTATTAAATTATAT---ATTTTAAT
1 TATTATG-ATTTTAGTAAATTATATAAAATATTAAT
* * * *
23229736 TATAAT-ATATTTAATAATAATTATGTTAAATTATCT-A-
1 TATTATGAT-TTTAGT-A-AATTAT-ATAAAATAT-TAAT
*
23229773 TATTATGATTTGAGTAAATTCATATAAGAATATTAAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* *
23229810 TATTAAGAATTTTATTAAATTATATA
1 TATTATG-ATTTTAGTAAATTATATA
23229836 TTTTAATTAT
Statistics
Matches: 100, Mismatches: 18, Indels: 30
0.68 0.12 0.20
Matches are distributed among these distances:
31 2 0.02
32 5 0.05
33 11 0.11
34 6 0.06
35 9 0.09
36 8 0.08
37 30 0.30
38 28 0.28
39 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (35 bp):
TATTATGATTTTAGTAAATTATATAAAATATTAAT
Found at i:23229745 original size:16 final size:16
Alignment explanation
Indices: 23229724--23229769 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
23229714 TTATTAAATT
23229724 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
23229740 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
23229755 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
23229770 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:23229778 original size:107 final size:108
Alignment explanation
Indices: 23229664--23229874 Score: 397
Period size: 107 Copynumber: 2.0 Consensus size: 108
23229654 TATAGTATTA
* *
23229664 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
23229729 TTTTAATTATAATATATTTAATAATAATTATG-TTAAATTATC
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
23229771 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
23229836 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 TTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
23229875 ATGATTAAAT
Statistics
Matches: 101, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
107 95 0.94
108 6 0.06
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (108 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATA
TTTTAATTATAATATATTTAATAATAATTATGTTTAAATTATC
Found at i:23229852 original size:16 final size:16
Alignment explanation
Indices: 23229831--23229872 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23229821 TTATTAAATT
*
23229831 ATATATTTTAATTATA
1 ATATATTTTAATAATA
23229847 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
23229862 AT-TATGTTTAA
1 ATATAT-TTTAA
23229873 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:23229857 original size:15 final size:15
Alignment explanation
Indices: 23229822--23229863 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23229812 TTAAGAATTT
*
23229822 TATTAAATTAT-ATA
1 TATTTAATTATAATA
23229836 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
23229850 TATTTAATAATAAT
1 TATTTAATTATAAT
23229864 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:23230043 original size:39 final size:40
Alignment explanation
Indices: 23230000--23230104 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
23229990 TTCCATTATG
23230000 CTATTACACCTCTATTCCATTCAACCAAATACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAATACAAGATTTA
* *** *
23230039 CTATTACGCCTCTATTCCATTACATTCAACCAAATAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAATACAAGATTTA
23230084 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
23230105 ACACCTCTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.28, G:0.05, T:0.36
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAATACAAGATTTA
Found at i:23230098 original size:45 final size:44
Alignment explanation
Indices: 23229998--23230107 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
23229988 TTTTCCATTA
23229998 TGCTATTACACCTCTATT-C----CATTCAACCAAATACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAATACAAGAT
* * ***
23230037 TACTATTACGCCTCTATTCCATTACATTCAACCAAATAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAATACAAGA-T
23230082 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
23230108 CCTCTATTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.35
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAATACAAGAT
Found at i:23230107 original size:16 final size:16
Alignment explanation
Indices: 23230086--23230139 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
23230076 TTGATTTGCT
23230086 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
23230102 ATTACACCTCTATTAC
1 ATTACACCTCTATTCC
*
23230118 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
*
23230134 AATACA
1 ATTACA
23230140 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:23230581 original size:3 final size:3
Alignment explanation
Indices: 23230573--23230602 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
23230563 GGCACCGCCC
23230573 TCT TCT TC- TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
23230603 TTCCTTTCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:23234485 original size:31 final size:31
Alignment explanation
Indices: 23234450--23234512 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
23234440 CATTTTGAAT
*
23234450 TGTCAATAATTCATCACACTATCGCAATATA
1 TGTCAAGAATTCATCACACTATCGCAATATA
23234481 TGTCAAGAATTCATCACACTATCGCAATATA
1 TGTCAAGAATTCATCACACTATCGCAATATA
23234512 T
1 T
23234513 AAATATGTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.32
Consensus pattern (31 bp):
TGTCAAGAATTCATCACACTATCGCAATATA
Found at i:23235738 original size:30 final size:30
Alignment explanation
Indices: 23235704--23235867 Score: 168
Period size: 30 Copynumber: 5.3 Consensus size: 30
23235694 ATCCAATGCT
*
23235704 CAAATAAATTCGGCAATATATATCCATATA
1 CAAATCAATTCGGCAATATATATCCATATA
* *
23235734 CAAATCAATTCAGCAATGTATATCCATATA
1 CAAATCAATTCGGCAATATATATCCATATA
** *
23235764 CAAAAT-AATTTAGCAATGTATATCCATATA
1 C-AAATCAATTCGGCAATATATATCCATATA
* * *
23235794 CAAATCAATTCGGTTATTTATATATCTATATA
1 CAAATCAATTCGG-CA-ATATATATCCATATA
* * *
23235826 TAAATTAATTCGGCAATATATATATCTATATA
1 CAAATCAATTCGGC-A-ATATATATCCATATA
23235858 CAAATCAATT
1 CAAATCAATT
23235868 TGACAACATA
Statistics
Matches: 113, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
29 4 0.04
30 57 0.50
31 5 0.04
32 47 0.42
ACGTcount: A:0.44, C:0.15, G:0.06, T:0.35
Consensus pattern (30 bp):
CAAATCAATTCGGCAATATATATCCATATA
Found at i:23235879 original size:32 final size:32
Alignment explanation
Indices: 23235719--23235879 Score: 102
Period size: 32 Copynumber: 5.2 Consensus size: 32
23235709 AAATTCGGCA
*
23235719 ATATATATCCATATACAAATCAA-TT--CAGC
1 ATATATATCCATATACAAATCAATTTGACAAC
*
23235748 AATGTATATCCATATACAAAAT-AATTT-AGC-A-
1 -ATATATATCCATATAC-AAATCAATTTGA-CAAC
* * *** *
23235779 ATGTATATCCATATACAAATCAATTCGGTTAT
1 ATATATATCCATATACAAATCAATTTGACAAC
* * * * * * *
23235811 TTATATATCTATATATAAATTAATTCGGCAAT
1 ATATATATCCATATACAAATCAATTTGACAAC
*
23235843 ATATATATCTATATACAAATCAATTTGACAAC
1 ATATATATCCATATACAAATCAATTTGACAAC
23235875 ATATA
1 ATATA
23235880 AAACATATAC
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
29 4 0.04
30 37 0.35
31 7 0.07
32 56 0.53
33 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (32 bp):
ATATATATCCATATACAAATCAATTTGACAAC
Found at i:23244354 original size:16 final size:15
Alignment explanation
Indices: 23244336--23244365 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
23244326 CAGAGCTTTA
23244336 AAAATTTTCCAAAAC
1 AAAATTTTCCAAAAC
23244351 AAAATTTTCCAAAAC
1 AAAATTTTCCAAAAC
23244366 CGAGTAGTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAATTTTCCAAAAC
Found at i:23244698 original size:19 final size:20
Alignment explanation
Indices: 23244664--23244701 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
23244654 TTTAATATTA
23244664 AATTAATATAAATATTTATC
1 AATTAATATAAATATTTATC
23244684 AATTAATAT-AATATTTAT
1 AATTAATATAAATATTTAT
23244702 TTTGATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
AATTAATATAAATATTTATC
Found at i:23244726 original size:5 final size:6
Alignment explanation
Indices: 23244655--23244732 Score: 51
Period size: 6 Copynumber: 13.7 Consensus size: 6
23244645 TTTAATCACT
* * * *
23244655 TTAATA TTAA-A TTAATA TAAATA TTTATCAA TTAATA -TAATA TTTATT
1 TTAATA TTAATA TTAATA TTAATA TTAAT--A TTAATA TTAATA TTAATA
*
23244703 TTGATA --AATA TT-ATA TTAAT- TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
23244733 ATCTTATTAA
Statistics
Matches: 55, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
4 3 0.05
5 20 0.36
6 27 0.49
8 5 0.09
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (6 bp):
TTAATA
Found at i:23244811 original size:11 final size:11
Alignment explanation
Indices: 23244795--23244870 Score: 54
Period size: 11 Copynumber: 6.8 Consensus size: 11
23244785 GATAATCACT
23244795 TTAATATTAAA
1 TTAATATTAAA
23244806 TTAATA--AAA
1 TTAATATTAAA
23244815 -TAATATTAAGA
1 TTAATATTAA-A
23244826 -TAATTATTAAA
1 TTAA-TATTAAA
23244837 TTTAAT-TTAATA
1 -TTAATATTAA-A
23244849 TTAAACTATTAAA
1 TT-AA-TATTAAA
*
23244862 ATAATATTA
1 TTAATATTA
23244871 TTTTTGGAAT
Statistics
Matches: 54, Mismatches: 1, Indels: 20
0.72 0.01 0.27
Matches are distributed among these distances:
8 5 0.09
9 3 0.06
10 2 0.04
11 22 0.41
12 12 0.22
13 6 0.11
14 4 0.07
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:23253297 original size:17 final size:17
Alignment explanation
Indices: 23253277--23253311 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
23253267 AAAAAAATAG
*
23253277 CAAAAACAGCAAAAAAA
1 CAAAAAAAGCAAAAAAA
23253294 CAAAAAAAGCAAAAAAA
1 CAAAAAAAGCAAAAAAA
23253311 C
1 C
23253312 GCAAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.77, C:0.17, G:0.06, T:0.00
Consensus pattern (17 bp):
CAAAAAAAGCAAAAAAA
Found at i:23253317 original size:17 final size:17
Alignment explanation
Indices: 23253260--23253318 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
23253250 TTCTTTAAAT
*
23253260 AAAAGCAAAAAAAATAGCAA
1 AAAAGC-AAAAAAA-CGC-A
**
23253280 AAACAGCAAAAAAACAAA
1 AAA-AGCAAAAAAACGCA
23253298 AAAAGCAAAAAAACGCA
1 AAAAGCAAAAAAACGCA
23253315 AAAA
1 AAAA
23253319 AAAAGAGTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
17 16 0.48
18 4 0.12
20 10 0.30
21 3 0.09
ACGTcount: A:0.76, C:0.14, G:0.08, T:0.02
Consensus pattern (17 bp):
AAAAGCAAAAAAACGCA
Found at i:23253321 original size:21 final size:21
Alignment explanation
Indices: 23253295--23253352 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
23253285 GCAAAAAAAC
23253295 AAAAAAAGCAAAAAAACGCA-A
1 AAAAAAAGCAAAAAAA-GCACA
*
23253316 AAAAAAAG-AGTAAAAAGCACA
1 AAAAAAAGCA-AAAAAAGCACA
23253337 AAAAAAAGCAAAAAAA
1 AAAAAAAGCAAAAAAA
23253353 AAAGAGTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 4 0.12
21 27 0.84
22 1 0.03
ACGTcount: A:0.78, C:0.10, G:0.10, T:0.02
Consensus pattern (21 bp):
AAAAAAAGCAAAAAAAGCACA
Found at i:23253339 original size:32 final size:33
Alignment explanation
Indices: 23253303--23253376 Score: 123
Period size: 33 Copynumber: 2.3 Consensus size: 33
23253293 ACAAAAAAAG
*
23253303 CAAAAAAACGC-AAAAAAAAAGAGTAAAAAGCA
1 CAAAAAAAAGCAAAAAAAAAAGAGTAAAAAGCA
*
23253335 CAAAAAAAAGCAAAAAAAAAAGAGTAAAAAGCG
1 CAAAAAAAAGCAAAAAAAAAAGAGTAAAAAGCA
23253368 CAAAAAAAA
1 CAAAAAAAA
23253377 AGAGCAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 10 0.26
33 29 0.74
ACGTcount: A:0.74, C:0.11, G:0.12, T:0.03
Consensus pattern (33 bp):
CAAAAAAAAGCAAAAAAAAAAGAGTAAAAAGCA
Found at i:23253348 original size:10 final size:10
Alignment explanation
Indices: 23253260--23253353 Score: 72
Period size: 10 Copynumber: 9.4 Consensus size: 10
23253250 TTCTTTAAAT
23253260 AAAAGCAAAAA
1 AAAAGC-AAAA
23253271 AAATAGC-AAA
1 AAA-AGCAAAA
*
23253281 AACAGC-AAA
1 AAAAGCAAAA
23253290 AAAA-C-AAA
1 AAAAGCAAAA
23253298 AAAAGCAAAA
1 AAAAGCAAAA
*
23253308 AAACGCAAAAA
1 AAAAGC-AAAA
**
23253319 AAAAG-AGTA
1 AAAAGCAAAA
23253328 AAAAGCACAAAA
1 AAAAG--CAAAA
23253340 AAAAGCAAAA
1 AAAAGCAAAA
23253350 AAAA
1 AAAA
23253354 AAGAGTAAAA
Statistics
Matches: 68, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
8 8 0.12
9 17 0.25
10 22 0.32
11 11 0.16
12 10 0.15
ACGTcount: A:0.77, C:0.12, G:0.10, T:0.02
Consensus pattern (10 bp):
AAAAGCAAAA
Found at i:23253352 original size:9 final size:9
Alignment explanation
Indices: 23253268--23253320 Score: 72
Period size: 9 Copynumber: 5.8 Consensus size: 9
23253258 ATAAAAGCAA
23253268 AAAAAATAGC
1 AAAAAA-AGC
*
23253278 AAAAACAGC
1 AAAAAAAGC
23253287 AAAAAAA-C
1 AAAAAAAGC
23253295 AAAAAAAGC
1 AAAAAAAGC
23253304 AAAAAAACGC
1 AAAAAAA-GC
23253314 AAAAAAA
1 AAAAAAA
23253321 AAGAGTAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
8 8 0.21
9 17 0.44
10 14 0.36
ACGTcount: A:0.77, C:0.13, G:0.08, T:0.02
Consensus pattern (9 bp):
AAAAAAAGC
Found at i:23253363 original size:21 final size:21
Alignment explanation
Indices: 23253339--23253394 Score: 85
Period size: 22 Copynumber: 2.6 Consensus size: 21
23253329 AAAGCACAAA
*
23253339 AAAAAGCAAAAAAAAAAGAGT
1 AAAAAGCAAAAAAAAAAGAGC
*
23253360 AAAAAGCGCAAAAAAAAAGAGC
1 AAAAAGC-AAAAAAAAAAGAGC
23253382 AAAAAGCAAAAAA
1 AAAAAGCAAAAAA
23253395 GCGCAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 12 0.39
22 19 0.61
ACGTcount: A:0.75, C:0.09, G:0.14, T:0.02
Consensus pattern (21 bp):
AAAAAGCAAAAAAAAAAGAGC
Found at i:23253405 original size:55 final size:57
Alignment explanation
Indices: 23253278--23253406 Score: 149
Period size: 55 Copynumber: 2.3 Consensus size: 57
23253268 AAAAAATAGC
* *
23253278 AAAAACAGCAAAAAAACAAAAAAAGCAAAAAAACGCAAAAAAAAAGAGTAAAAAGCACA
1 AAAAAAAGCAAAAAAA-AAAAAAAGCAAAAAAACGCAAAAAAAAAGAGCAAAAAG-ACA
* * *
23253337 AAAAAAAGC--AAAAAAAAAAGAG-TAAAAAGCGCAAAAAAAAAGAGCAAAAAG-CA
1 AAAAAAAGCAAAAAAAAAAAAAAGCAAAAAAACGCAAAAAAAAAGAGCAAAAAGACA
**
23253390 AAAAAGCGCAAAAAAAA
1 AAAAAAAGCAAAAAAAA
23253407 GTTGCCTACC
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
53 9 0.15
55 32 0.52
56 7 0.11
57 5 0.08
59 8 0.13
ACGTcount: A:0.74, C:0.12, G:0.12, T:0.02
Consensus pattern (57 bp):
AAAAAAAGCAAAAAAAAAAAAAAGCAAAAAAACGCAAAAAAAAAGAGCAAAAAGACA
Found at i:23258749 original size:16 final size:16
Alignment explanation
Indices: 23258728--23258764 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
23258718 GACTAATGCG
23258728 TAACTTTTCAGAATTT
1 TAACTTTTCAGAATTT
23258744 TAACTTTTCAGAATTT
1 TAACTTTTCAGAATTT
*
23258760 AAACT
1 TAACT
23258765 ACTGTCCTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.35, C:0.14, G:0.05, T:0.46
Consensus pattern (16 bp):
TAACTTTTCAGAATTT
Found at i:23265805 original size:26 final size:25
Alignment explanation
Indices: 23265771--23265856 Score: 84
Period size: 28 Copynumber: 3.3 Consensus size: 25
23265761 CTCAAAATCC
23265771 TAAAAAAATGGAAATATTAAATAAAA
1 TAAAAAAATGGAAATATTAAA-AAAA
** *
23265797 TAAAAAAATTTTCAAATGATGAAAAAAA
1 TAAAAAAA--TGGAAAT-ATTAAAAAAA
*
23265825 TAAAAAAATGGAAACT-TTTAAAAAA
1 TAAAAAAATGGAAA-TATTAAAAAAA
23265850 TAAAAAA
1 TAAAAAA
23265857 TCGAATAAAC
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
25 14 0.29
26 12 0.24
27 1 0.02
28 17 0.35
29 5 0.10
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.23
Consensus pattern (25 bp):
TAAAAAAATGGAAATATTAAAAAAA
Found at i:23269452 original size:295 final size:295
Alignment explanation
Indices: 23268922--23269488 Score: 1001
Period size: 295 Copynumber: 1.9 Consensus size: 295
23268912 TCAAAGGAGG
* *
23268922 TTGGGAATATATGTTGGTTATGCATCTCCTTCTATAATTAAGTATGTTGAACCATTAACTGGATA
1 TTGGGAATATATGTTGGTTATGAATCTCCTTCTATAATTAAGTATGTTGAACCATTAACTGGAGA
*
23268987 TTTATTTACTGCACGATTTGTTGATTGTCACTTTGATGAAACAACATTCCCAACATCAGGGTAGA
66 TTTATTTACTGCACGATTTGTTGATTGTCACTTTGATGAAACAACATTCCCAACATAAGGGTAGA
* *
23269052 GAATAAAAAGTTGGATGAATAAAGTGTTTGAAATTAATTATCATTGTCTAATATCCTTATACAAA
131 GAATAAAAAGCTGGATGAATAAAGTGCTTGAAATTAATTATCATTGTCTAATATCCTTATACAAA
* * *
23269117 GCAATGCAAATCAGAAGTTCAACAAATAATTCATTTTACAAATCAAATGGCCAGATTTATTTACT
196 GCAATGCAAATCAGAAGTTCAACAAATAATTAATTTTACAAATCAAACGGCCAGATTCATTTACT
23269182 GACCTAAAAAGAATTACAAAATCTCACATACCAGC
261 GACCTAAAAAGAATTACAAAATCTCACATACCAGC
* *
23269217 TTGGGAATATATGTTGGTTATGAATCTCCTTTTATAATTAAGTATGTTGAACCATTAGCTGGAGA
1 TTGGGAATATATGTTGGTTATGAATCTCCTTCTATAATTAAGTATGTTGAACCATTAACTGGAGA
23269282 TTTATTTACTGCACGATTTGTTGATTGTCACTTTGATGAAACAACATTCCCAACATTAAGGG-AG
66 TTTATTTACTGCACGATTTGTTGATTGTCACTTTGATGAAACAACATTCCCAACA-TAAGGGTAG
23269346 AGAATAAAAAGCTGGATGAATAAAGTGCTTGAAATTAATTATCATTGTCTAATATCCTTATACAA
130 AGAATAAAAAGCTGGATGAATAAAGTGCTTGAAATTAATTATCATTGTCTAATATCCTTATACAA
* * *
23269411 AGCAATGCAAATCAGAAGTTTAGCAAATAATTAATTTTACAAATTAAACGGCCAGATTCATTTAC
195 AGCAATGCAAATCAGAAGTTCAACAAATAATTAATTTTACAAATCAAACGGCCAGATTCATTTAC
23269476 TGACCTAAAAAGA
260 TGACCTAAAAAGA
23269489 CAAAATCTCA
Statistics
Matches: 258, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
295 253 0.98
296 5 0.02
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.33
Consensus pattern (295 bp):
TTGGGAATATATGTTGGTTATGAATCTCCTTCTATAATTAAGTATGTTGAACCATTAACTGGAGA
TTTATTTACTGCACGATTTGTTGATTGTCACTTTGATGAAACAACATTCCCAACATAAGGGTAGA
GAATAAAAAGCTGGATGAATAAAGTGCTTGAAATTAATTATCATTGTCTAATATCCTTATACAAA
GCAATGCAAATCAGAAGTTCAACAAATAATTAATTTTACAAATCAAACGGCCAGATTCATTTACT
GACCTAAAAAGAATTACAAAATCTCACATACCAGC
Found at i:23272729 original size:24 final size:24
Alignment explanation
Indices: 23272695--23272741 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
23272685 CTTTAAAAAA
23272695 TTAAAAATTTCTAGAATTTTTTTC
1 TTAAAAATTTCTAGAATTTTTTTC
*
23272719 TTAAAATTTTCTAGAATTTTTTT
1 TTAAAAATTTCTAGAATTTTTTT
23272742 TTTGACTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.57
Consensus pattern (24 bp):
TTAAAAATTTCTAGAATTTTTTTC
Found at i:23272868 original size:18 final size:19
Alignment explanation
Indices: 23272845--23272884 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
23272835 TTTATTAATC
23272845 TTTATA-ACCTTTTAGAAT
1 TTTATATACCTTTTAGAAT
* *
23272863 TTTATATTCTTTTTAGAAT
1 TTTATATACCTTTTAGAAT
23272882 TTT
1 TTT
23272885 CAAAATCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.28, C:0.07, G:0.05, T:0.60
Consensus pattern (19 bp):
TTTATATACCTTTTAGAAT
Done.