Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 79 of 203
Found at i:25036854 original size:10 final size:9
Alignment explanation
Indices: 25036839--25036915 Score: 63
Period size: 8 Copynumber: 8.7 Consensus size: 9
25036829 TATATATTCT
25036839 TTTTTTATAA
1 TTTTTTAT-A
25036849 TTTTTTAT-
1 TTTTTTATA
25036857 TCTTTTTATA
1 T-TTTTTATA
*
25036867 -TATTTATA
1 TTTTTTATA
*
25036875 TATTTTAT-
1 TTTTTTATA
25036883 TTTTTTATA
1 TTTTTTATA
**
25036892 -AATTTATAA
1 TTTTTTAT-A
25036901 TTTTTTATA
1 TTTTTTATA
25036910 TTTTTT
1 TTTTTT
25036916 TCAAAATATT
Statistics
Matches: 53, Mismatches: 8, Indels: 13
0.72 0.11 0.18
Matches are distributed among these distances:
8 20 0.38
9 20 0.38
10 13 0.25
ACGTcount: A:0.26, C:0.01, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTTTTATA
Found at i:25036865 original size:42 final size:43
Alignment explanation
Indices: 25036808--25036910 Score: 122
Period size: 42 Copynumber: 2.4 Consensus size: 43
25036798 TTAATTATGC
* *
25036808 TTTTTAGTTCTTTTATGTATTTATATA-TTCTTTTTTTATAAT
1 TTTTTAGTTCTTTTATATATTTATATATTTATTTTTTTATAAT
*
25036850 TTTTTA-TTCTTTTTATATATTTATATATTTTATTTTTTTATAAA
1 TTTTTAGTTC-TTTTATATATTTATATA-TTTATTTTTTTATAAT
* *
25036894 TTTATAATT-TTTTATAT
1 TTTTTAGTTCTTTTATAT
25036911 TTTTTTCAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
41 3 0.06
42 22 0.42
43 8 0.15
44 18 0.34
45 2 0.04
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.70
Consensus pattern (43 bp):
TTTTTAGTTCTTTTATATATTTATATATTTATTTTTTTATAAT
Found at i:25036878 original size:21 final size:21
Alignment explanation
Indices: 25036818--25036878 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
25036808 TTTTTAGTTC
*
25036818 TTTTATGTATTTATATATTCT
1 TTTTATATATTTATATATTCT
* *
25036839 TTTTTTATAATTT-TTTATTCT
1 TTTTATAT-ATTTATATATTCT
25036860 TTTTATATATTTATATATT
1 TTTTATATATTTATATATT
25036879 TTATTTTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 4 0.12
21 25 0.76
22 4 0.12
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTATATATTTATATATTCT
Found at i:25038134 original size:14 final size:14
Alignment explanation
Indices: 25038115--25038142 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25038105 ATGGAATATG
25038115 ATGGCTCTAATCTA
1 ATGGCTCTAATCTA
25038129 ATGGCTCTAATCTA
1 ATGGCTCTAATCTA
25038143 GGGAAGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (14 bp):
ATGGCTCTAATCTA
Found at i:25040201 original size:14 final size:14
Alignment explanation
Indices: 25040182--25040211 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
25040172 TTTTTGCCTT
25040182 AGCCAACTGAATAG
1 AGCCAACTGAATAG
25040196 AGCCAACTGAATAG
1 AGCCAACTGAATAG
25040210 AG
1 AG
25040212 GTATGAACGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.13
Consensus pattern (14 bp):
AGCCAACTGAATAG
Found at i:25051631 original size:22 final size:21
Alignment explanation
Indices: 25051593--25051644 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 21
25051583 AAAAAAACTG
*
25051593 TTATTTTTTTCACTATTTTAT
1 TTATTTTTCTCACTATTTTAT
*
25051614 TTATATTTTCTCATTATTTTACT
1 TTAT-TTTTCTCACTATTTTA-T
25051637 GTTATTTT
1 -TTATTTT
25051645 ATTATTATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 4 0.15
22 14 0.54
23 4 0.15
24 4 0.15
ACGTcount: A:0.19, C:0.10, G:0.02, T:0.69
Consensus pattern (21 bp):
TTATTTTTCTCACTATTTTAT
Found at i:25051651 original size:22 final size:22
Alignment explanation
Indices: 25051589--25051652 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
25051579 GTAAAAAAAA
* *
25051589 ACTGTTATTTTTTTCACTATTTT
1 ACTGTTATTTTATT-ATTATTTT
* * *
25051612 A-TTTATATTTTCTCATTATTTT
1 ACTGT-TATTTTATTATTATTTT
25051634 ACTGTTATTTTATTATTAT
1 ACTGTTATTTTATTATTAT
25051653 GTTGCTACCA
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
22 22 0.69
23 10 0.31
ACGTcount: A:0.22, C:0.09, G:0.03, T:0.66
Consensus pattern (22 bp):
ACTGTTATTTTATTATTATTTT
Found at i:25054988 original size:14 final size:14
Alignment explanation
Indices: 25054966--25054995 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
25054956 TTAAAGTATG
25054966 TTCTCTTTTTTCTT
1 TTCTCTTTTTTCTT
*
25054980 TTCTTTTTTTTCTT
1 TTCTCTTTTTTCTT
25054994 TT
1 TT
25054996 ATCCCTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
TTCTCTTTTTTCTT
Found at i:25057054 original size:137 final size:138
Alignment explanation
Indices: 25056806--25057075 Score: 472
Period size: 137 Copynumber: 2.0 Consensus size: 138
25056796 AAAATGATGG
* *
25056806 ATAAATCATGGGATTTGATAAATATTTAGAGAATTGTACGGTGATTGAGGCTAAACTTTAAGACA
1 ATAAATCATGAGATTTGATAAATATTTAGAGAATTGTACGGTGATTGACGCTAAACTTTAAGACA
*
25056871 TCATTGACAGTTTAAAATTTATTATAGATAGAATATTTGAAAAGATCTTAATCGAAATTGATATT
66 TCATTGACAGTTTAAAATTTATTATAGATAGAATATTTAAAAAGATCTTAATCGAAATTGATATT
25056936 GATTTTTC
131 GATTTTTC
*
25056944 ATAAATCATGAGATTTGATAAATATTTAGAGAATTGTACTGTGATTGACGCTAAA-TTTAAGACA
1 ATAAATCATGAGATTTGATAAATATTTAGAGAATTGTACGGTGATTGACGCTAAACTTTAAGACA
*
25057008 TCA-TGAACAGTTTAAAGTTTATTATAGATAGAATATTTAAAAAGATCTTAATCGAAATTGATAT
66 TCATTG-ACAGTTTAAAATTTATTATAGATAGAATATTTAAAAAGATCTTAATCGAAATTGATAT
25057072 TGAT
130 TGAT
25057076 ATTGATATTT
Statistics
Matches: 126, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
136 2 0.02
137 72 0.57
138 52 0.41
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (138 bp):
ATAAATCATGAGATTTGATAAATATTTAGAGAATTGTACGGTGATTGACGCTAAACTTTAAGACA
TCATTGACAGTTTAAAATTTATTATAGATAGAATATTTAAAAAGATCTTAATCGAAATTGATATT
GATTTTTC
Found at i:25059924 original size:28 final size:25
Alignment explanation
Indices: 25059892--25059954 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 25
25059882 AGAGTATTTG
*
25059892 AAATTTATGATATTTATCTTATTTAAAA
1 AAATTTATGATA-TAATCTTA--TAAAA
*
25059920 AAATTAATTTGATATAATCTTATAAAA
1 AAATT--TATGATATAATCTTATAAAA
25059947 AAATTTAT
1 AAATTTAT
25059955 CAAAGAGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
25 2 0.07
27 10 0.33
28 5 0.17
29 7 0.23
30 6 0.20
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (25 bp):
AAATTTATGATATAATCTTATAAAA
Found at i:25061353 original size:19 final size:20
Alignment explanation
Indices: 25061331--25061368 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
25061321 ATAAATAAGT
25061331 ATTT-TCAA-ATTACAAATTA
1 ATTTATCAATATTA-AAATTA
25061350 ATTTATCAATATTAAAATT
1 ATTTATCAATATTAAAATT
25061369 TTAAAACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 9 0.53
21 4 0.24
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTTATCAATATTAAAATTA
Found at i:25066580 original size:17 final size:16
Alignment explanation
Indices: 25066530--25066574 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 16
25066520 TTTAATTTTT
25066530 TAAAAATTATAAATATA
1 TAAAAATTATAAATA-A
25066547 TAAAATATTA-AAATAA
1 TAAAA-ATTATAAATAA
25066563 TAAAAATTATAA
1 TAAAAATTATAA
25066575 TTTAATTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 4 0.15
16 8 0.31
17 10 0.38
18 4 0.15
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
TAAAAATTATAAATAA
Found at i:25074060 original size:13 final size:14
Alignment explanation
Indices: 25074023--25074050 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25074013 GTTCTTCGTC
25074023 CAAATATTTAATTA
1 CAAATATTTAATTA
25074037 CAAATATTTAATTA
1 CAAATATTTAATTA
25074051 TTATATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
CAAATATTTAATTA
Found at i:25074074 original size:19 final size:19
Alignment explanation
Indices: 25074052--25074089 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
25074042 ATTTAATTAT
25074052 TATATT-TAAATATAATTTA
1 TATATTCTAAATA-AATTTA
*
25074071 TATATTCTAATTAAATTTA
1 TATATTCTAAATAAATTTA
25074090 ATAAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
TATATTCTAAATAAATTTA
Found at i:25074345 original size:26 final size:26
Alignment explanation
Indices: 25074316--25074381 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
25074306 ATCATTCAAA
* * **
25074316 TTTTCAAAAGTATTTCTTAAAATTAC
1 TTTTCAAAAGCATTTCTCAAAAGCAC
* *
25074342 TTTTCCACAGCATTTCTCAAAAGCAC
1 TTTTCAAAAGCATTTCTCAAAAGCAC
*
25074368 TTTTCAAAGGCATT
1 TTTTCAAAAGCATT
25074382 GCTAAACTAG
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (26 bp):
TTTTCAAAAGCATTTCTCAAAAGCAC
Found at i:25077287 original size:45 final size:45
Alignment explanation
Indices: 25077212--25077323 Score: 170
Period size: 45 Copynumber: 2.5 Consensus size: 45
25077202 AATCAATAAT
* * *
25077212 GGTAGCAGTAACAGTAACAGAATTCAACACACAAAGTGTCGAATC
1 GGTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATC
* *
25077257 TGTAACAGTAACGGTAACAGTATTCGACACACAAAGTGTCGAATC
1 GGTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATC
*
25077302 GGTGACAGTAACGGTAACAGTA
1 GGTAACAGTAACGGTAACAGTA
25077324 ACAATAGTCG
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 60 1.00
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.20
Consensus pattern (45 bp):
GGTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATC
Found at i:25078442 original size:23 final size:24
Alignment explanation
Indices: 25078415--25078462 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
25078405 AGTTTATTGT
25078415 ATTATTA-TATTAACTT-AATAATA
1 ATTATTATTATT-ACTTAAATAATA
*
25078438 ATTATTATTATTTCTTAAATAATA
1 ATTATTATTATTACTTAAATAATA
25078462 A
1 A
25078463 GTAAATAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (24 bp):
ATTATTATTATTACTTAAATAATA
Found at i:25078814 original size:9 final size:9
Alignment explanation
Indices: 25078800--25078824 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
25078790 AATTTATAAT
25078800 ATAATAACA
1 ATAATAACA
25078809 ATAATAACA
1 ATAATAACA
25078818 ATAATAA
1 ATAATAA
25078825 TATATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (9 bp):
ATAATAACA
Found at i:25084376 original size:52 final size:53
Alignment explanation
Indices: 25084267--25084426 Score: 173
Period size: 52 Copynumber: 3.1 Consensus size: 53
25084257 TGACGGAAAA
* * * * *
25084267 GATGTGA-TACATGATTCCGTATAAGACCATAGCCGAGCTACGGCATCGGTAC
1 GATGTGATTACGTGATCCCGTATAAGACCATAGCCGGGCTATGGCATCGGTAT
* * *
25084319 CATGTGATT-CGT-ATCCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGT
1 GATGTGATTACGTGAT-CCCGTATAAGACCATAGCCGGGCTATGGCATCGGTAT
* * * **
25084371 GATGTGATTATGTGATTCCGTATAAGACCATATCCGGAATATGGCATCGGTAT
1 GATGTGATTACGTGATCCCGTATAAGACCATAGCCGGGCTATGGCATCGGTAT
25084424 GAT
1 GAT
25084427 ATGTGGTCCG
Statistics
Matches: 88, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
51 2 0.02
52 47 0.53
53 37 0.42
54 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (53 bp):
GATGTGATTACGTGATCCCGTATAAGACCATAGCCGGGCTATGGCATCGGTAT
Found at i:25084754 original size:19 final size:19
Alignment explanation
Indices: 25084730--25084775 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
25084720 TATGCCTAAG
25084730 AGCTTACTAAGCTTCAATA
1 AGCTTACTAAGCTTCAATA
25084749 AGCTTACTAAGCTTCAATA
1 AGCTTACTAAGCTTCAATA
25084768 AGCTTACT
1 AGCTTACT
25084776 TGTGTGTGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.33
Consensus pattern (19 bp):
AGCTTACTAAGCTTCAATA
Found at i:25084759 original size:9 final size:9
Alignment explanation
Indices: 25084730--25084775 Score: 56
Period size: 10 Copynumber: 4.9 Consensus size: 9
25084720 TATGCCTAAG
25084730 AGCTTACTA
1 AGCTTACTA
*
25084739 AGCTTCAATA
1 AGCTT-ACTA
25084749 AGCTTACTA
1 AGCTTACTA
*
25084758 AGCTTCAATA
1 AGCTT-ACTA
25084768 AGCTTACT
1 AGCTTACT
25084776 TGTGTGTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 15 0.48
10 16 0.52
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.33
Consensus pattern (9 bp):
AGCTTACTA
Found at i:25088136 original size:50 final size:50
Alignment explanation
Indices: 25088061--25088237 Score: 248
Period size: 50 Copynumber: 3.5 Consensus size: 50
25088051 CCATGGCAAC
25088061 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
25088111 AAGTGATAAGTAATAGCTTCGGCTACATTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
25088161 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAATGATAAAT-A
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
25088210 ATACGTGAAAAGTGGTAGCTTCAGCTAC
1 A-A-GTGATAAGTGATAGCTTCGGCTAC
25088238 CTAATCAGTG
Statistics
Matches: 114, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
49 2 0.02
50 90 0.79
51 22 0.19
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:25088252 original size:31 final size:31
Alignment explanation
Indices: 25088214--25088298 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
25088204 TAAATAATAC
*
25088214 GTGAAAAGTGGTAGCTTCAGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTAATCA
* *
25088245 GTGAAAAGTGGTAGCTCCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTAATCA
*
25088276 GTGAATAGTGGTAGCTTCGGCTA
1 GTGAAAAGTGGTAGCTTCGGCTA
25088299 TAAGTGACAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 49 1.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTAATCA
Found at i:25088387 original size:47 final size:46
Alignment explanation
Indices: 25088317--25088481 Score: 151
Period size: 47 Copynumber: 3.7 Consensus size: 46
25088307 AAGTGATTTC
* *
25088317 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * * * *
25088363 CTGTATAAGAACATATCTGGGATATCGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
25088410 CGTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATA
* * * *
25088452 TGTGTAAGACCATAGCTGGGCTATGGCATC
1 CGTATAAGACCATATCTGGGATATGGCATC
25088482 ATTATCTGAA
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
41 7 0.07
42 31 0.30
46 25 0.25
47 39 0.38
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:25088464 original size:42 final size:43
Alignment explanation
Indices: 25088411--25088525 Score: 171
Period size: 42 Copynumber: 2.7 Consensus size: 43
25088401 TATGTGATTC
*
25088411 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
25088453 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATCTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
25088495 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
25088526 GAAAACGAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:25092819 original size:18 final size:18
Alignment explanation
Indices: 25092796--25092840 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
25092786 TATAACTCCC
*
25092796 ATATTTTCTGTCTCTATA
1 ATATTTCCTGTCTCTATA
25092814 ATATTTCCTGTCTCTATA
1 ATATTTCCTGTCTCTATA
25092832 ATATTTCCT
1 ATATTTCCT
25092841 ATTACTTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (18 bp):
ATATTTCCTGTCTCTATA
Found at i:25094563 original size:11 final size:11
Alignment explanation
Indices: 25094547--25094571 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25094537 ATATCTAGAA
25094547 TTCTCTTCATT
1 TTCTCTTCATT
25094558 TTCTCTTCATT
1 TTCTCTTCATT
25094569 TTC
1 TTC
25094572 ATCAGTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (11 bp):
TTCTCTTCATT
Found at i:25099386 original size:13 final size:13
Alignment explanation
Indices: 25099368--25099392 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25099358 GTTGGAAGGT
25099368 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
25099381 TTTTTCTTTTTT
1 TTTTTCTTTTTT
25099393 AACTTTACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:25102933 original size:18 final size:18
Alignment explanation
Indices: 25102910--25102945 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
25102900 AAAATTAGAT
25102910 GATTTGAATAAAAATATA
1 GATTTGAATAAAAATATA
**
25102928 GATTTGTGTAAAAATATA
1 GATTTGAATAAAAATATA
25102946 ATATTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (18 bp):
GATTTGAATAAAAATATA
Found at i:25105919 original size:13 final size:13
Alignment explanation
Indices: 25105901--25105925 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25105891 TTTTTTTATA
25105901 TTTTTAATTAATG
1 TTTTTAATTAATG
25105914 TTTTTAATTAAT
1 TTTTTAATTAAT
25105926 AAATATATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:25105957 original size:16 final size:15
Alignment explanation
Indices: 25105936--25105984 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
25105926 AAATATATTG
25105936 TTTTTAATTATTAAAA
1 TTTTTAATTA-TAAAA
**
25105952 TTTTTAATTAATAACT
1 TTTTTAATT-ATAAAA
*
25105968 TTTTTATTTATAAAA
1 TTTTTAATTATAAAA
25105983 TT
1 TT
25105985 AAATAATAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
15 6 0.22
16 20 0.74
17 1 0.04
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTTTAATTATAAAA
Found at i:25106245 original size:12 final size:13
Alignment explanation
Indices: 25106217--25106245 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
25106207 ATATGTAAAA
25106217 TATTTCAAATAAT
1 TATTTCAAATAAT
25106230 TATTTCAAAT-AT
1 TATTTCAAATAAT
25106242 TATT
1 TATT
25106246 ATGTTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (13 bp):
TATTTCAAATAAT
Found at i:25117939 original size:40 final size:40
Alignment explanation
Indices: 25117884--25117963 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
25117874 TTTTAAAATC
25117884 AGAGATTCTCCAGGACTATTGAAACACAATCCAGTTCTTT
1 AGAGATTCTCCAGGACTATTGAAACACAATCCAGTTCTTT
25117924 AGAGATTCTCCAGGACTATTGAAACACAATCCAGTTCTTT
1 AGAGATTCTCCAGGACTATTGAAACACAATCCAGTTCTTT
25117964 CCCCAGATGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (40 bp):
AGAGATTCTCCAGGACTATTGAAACACAATCCAGTTCTTT
Found at i:25122661 original size:63 final size:63
Alignment explanation
Indices: 25122562--25122686 Score: 232
Period size: 63 Copynumber: 2.0 Consensus size: 63
25122552 CAGTCTGAGG
25122562 TGTTAAGTACTTCTAGTTCTATGAGAAAGGTCATGTCCCTCGAGCCAGCGGAGCATAAATCTA
1 TGTTAAGTACTTCTAGTTCTATGAGAAAGGTCATGTCCCTCGAGCCAGCGGAGCATAAATCTA
* *
25122625 TGTTAAGTACTTCTAGTTCTATGAGAAAGGTCATGTCTCTTGAGCCAGCGGAGCATAAATCT
1 TGTTAAGTACTTCTAGTTCTATGAGAAAGGTCATGTCCCTCGAGCCAGCGGAGCATAAATCT
25122687 GACATTCTTA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (63 bp):
TGTTAAGTACTTCTAGTTCTATGAGAAAGGTCATGTCCCTCGAGCCAGCGGAGCATAAATCTA
Found at i:25132738 original size:52 final size:48
Alignment explanation
Indices: 25132697--25132850 Score: 145
Period size: 47 Copynumber: 3.2 Consensus size: 48
25132687 CTTCGGAGAA
* *
25132697 ATGTGATATGTGCTTCCGTATGAGACCATATCCGGGATATGGCATCGG
1 ATGTGATATGTGCTTCCGTATAAGACCATATACGGGATATGGCATCGG
* * * *
25132745 -TGTGATATGTGCTACTGTATAAGACCATATATGGGATATGGCATC-A
1 ATGTGATATGTGCTTCCGTATAAGACCATATACGGGATATGGCATCGG
* * * ** * *
25132791 ATGTGATATATG-ATCCGTGTAAGACCAT-GGCTGGGCTATGGCCTCGG
1 ATGTGATATGTGCTTCCGTATAAGACCATATAC-GGGATATGGCATCGG
25132838 TATGTGATATGTG
1 -ATGTGATATGTG
25132851 ACTATGTGCC
Statistics
Matches: 84, Mismatches: 18, Indels: 8
0.76 0.16 0.07
Matches are distributed among these distances:
46 23 0.27
47 50 0.60
48 11 0.13
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (48 bp):
ATGTGATATGTGCTTCCGTATAAGACCATATACGGGATATGGCATCGG
Found at i:25132770 original size:47 final size:47
Alignment explanation
Indices: 25132696--25132818 Score: 149
Period size: 47 Copynumber: 2.6 Consensus size: 47
25132686 GCTTCGGAGA
* * *
25132696 AATGTGATATGTGCTTCCGTATGAGACCATATCCGGGATATGGCATC
1 AATGTGATATGTGCTACCGTATAAGACCATATACGGGATATGGCATC
** * *
25132743 GGTGTGATATGTGCTACTGTATAAGACCATATATGGGATATGGCATC
1 AATGTGATATGTGCTACCGTATAAGACCATATACGGGATATGGCATC
* * *
25132790 AATGTGATATATGAT-CCGTGTAAGACCAT
1 AATGTGATATGTGCTACCGTATAAGACCAT
25132819 GGCTGGGCTA
Statistics
Matches: 63, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
46 12 0.19
47 51 0.81
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.31
Consensus pattern (47 bp):
AATGTGATATGTGCTACCGTATAAGACCATATACGGGATATGGCATC
Found at i:25135593 original size:78 final size:78
Alignment explanation
Indices: 25135464--25135771 Score: 492
Period size: 78 Copynumber: 3.9 Consensus size: 78
25135454 GAGTCACATC
* * * * * *
25135464 TCATGTAACTATAGTGATTCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAGGTTACCAT
1 TCATGTAACTGTAGCGAATCAAGATTACTTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
25135529 AATGAATCATATA
66 AATGAATCATATA
*
25135542 TCATGTAACTGTAGCGAATCAAGATTACTTTTTCAGGTCAAATCCTATCCACCTTAGGTTACCAT
1 TCATGTAACTGTAGCGAATCAAGATTACTTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
25135607 AATGAATCATATA
66 AATGAATCATATA
* * *
25135620 TCATGTAACTGTAGTGAATCAGGATTA-TCTTTTCAGGTCAAATCCTATCCTCCTTAAGTTACCA
1 TCATGTAACTGTAGCGAATCAAGATTACT-TTTTCAGGTCAAATCCTATCCACCTTAAGTTACCA
*
25135684 TAGTGAATCATATA
65 TAATGAATCATATA
25135698 TCATGTAACTGTAGCGAATCAAGATTACTTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
1 TCATGTAACTGTAGCGAATCAAGATTACTTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
*
25135763 AGTGAATCA
66 AATGAATCA
25135772 GGAACGAATC
Statistics
Matches: 215, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
77 1 0.00
78 213 0.99
79 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.34
Consensus pattern (78 bp):
TCATGTAACTGTAGCGAATCAAGATTACTTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
AATGAATCATATA
Found at i:25135748 original size:156 final size:156
Alignment explanation
Indices: 25135464--25135771 Score: 544
Period size: 156 Copynumber: 2.0 Consensus size: 156
25135454 GAGTCACATC
* *
25135464 TCATGTAACTATAGTGATTCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAGGTTACCAT
1 TCATGTAACTATAGTGAATCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
25135529 AATGAATCATATATCATGTAACTGTAGCGAATCAAGATTACTTTTTCAGGTCAAATCCTATCCAC
66 AATGAATCATATATCATGTAACTGTAGCGAATCAAGATTACTTTTTCAGGTCAAATCCTATCCAC
*
25135594 CTTAGGTTACCATAATGAATCATATA
131 CTTAAGTTACCATAATGAATCATATA
* * *
25135620 TCATGTAACTGTAGTGAATCAGGATTATCTTTTCAGGTCAAATCCTATCCTCCTTAAGTTACCAT
1 TCATGTAACTATAGTGAATCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
*
25135685 AGTGAATCATATATCATGTAACTGTAGCGAATCAAGATTACTTTTTCAGGTCAAATCCTATCCAC
66 AATGAATCATATATCATGTAACTGTAGCGAATCAAGATTACTTTTTCAGGTCAAATCCTATCCAC
*
25135750 CTTAAGTTACCATAGTGAATCA
131 CTTAAGTTACCATAATGAATCA
25135772 GGAACGAATC
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
156 144 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.34
Consensus pattern (156 bp):
TCATGTAACTATAGTGAATCAGGATTACCTTTTCAGGTCAAATCCTATCCACCTTAAGTTACCAT
AATGAATCATATATCATGTAACTGTAGCGAATCAAGATTACTTTTTCAGGTCAAATCCTATCCAC
CTTAAGTTACCATAATGAATCATATA
Found at i:25138233 original size:31 final size:30
Alignment explanation
Indices: 25138198--25138267 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
25138188 ATACACAAAT
25138198 AATTTTATGTGTATGACTGAATCAAAATCAA
1 AATTTTATGTGTATGACTGAA-CAAAATCAA
* * * * *
25138229 AATTTTATATTTATGATTGCACCAAATCAA
1 AATTTTATGTGTATGACTGAACAAAATCAA
25138259 AA-TTTATGT
1 AATTTTATGT
25138268 ATCAAATTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 6 0.18
30 10 0.30
31 17 0.52
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (30 bp):
AATTTTATGTGTATGACTGAACAAAATCAA
Found at i:25139067 original size:3 final size:3
Alignment explanation
Indices: 25139059--25139087 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
25139049 GAAAGGAGCA
25139059 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
25139088 GGCAAAAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:25140486 original size:30 final size:30
Alignment explanation
Indices: 25140450--25140512 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
25140440 ACTTAACAAG
25140450 CAAATGCCTCAAAAATAATAAAAAAATTAA
1 CAAATGCCTCAAAAATAATAAAAAAATTAA
** *
25140480 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCAAAAATAATAAAAAAATTAA
25140510 CAA
1 CAA
25140513 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.60, C:0.14, G:0.03, T:0.22
Consensus pattern (30 bp):
CAAATGCCTCAAAAATAATAAAAAAATTAA
Found at i:25141464 original size:46 final size:46
Alignment explanation
Indices: 25141393--25141487 Score: 156
Period size: 46 Copynumber: 2.1 Consensus size: 46
25141383 TACGAAACTG
* *
25141393 TATTTTTTTCATGAATCTAAGTCGAAGTTTGTTAAAATGGATATAT
1 TATTTTTCTCATGAATCTAAGTCGAAGTTTATTAAAATGGATATAT
25141439 TATTTTTCTCATGAATCTGAA-TCGAAGTTTATTAAAATGGATATAT
1 TATTTTTCTCATGAATCT-AAGTCGAAGTTTATTAAAATGGATATAT
25141485 TAT
1 TAT
25141488 CAAAATAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 44 0.96
47 2 0.04
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.45
Consensus pattern (46 bp):
TATTTTTCTCATGAATCTAAGTCGAAGTTTATTAAAATGGATATAT
Found at i:25142585 original size:21 final size:21
Alignment explanation
Indices: 25142559--25142599 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
25142549 ATAAATGTTA
* * *
25142559 AAAATCTTAAATTTTAAACTT
1 AAAATCCTAAACTTAAAACTT
25142580 AAAATCCTAAACTTAAAACT
1 AAAATCCTAAACTTAAAACT
25142600 CAAGATGTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (21 bp):
AAAATCCTAAACTTAAAACTT
Found at i:25143599 original size:18 final size:18
Alignment explanation
Indices: 25143578--25143620 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
25143568 CATTTATAAA
*
25143578 TTTATAAATTTTTA-ATTT
1 TTTATAAATTTATATA-TT
*
25143596 TTTATATATTTATATATT
1 TTTATAAATTTATATATT
25143614 TTTATAA
1 TTTATAA
25143621 TAAATGGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTATAAATTTATATATT
Found at i:25149818 original size:8 final size:8
Alignment explanation
Indices: 25149807--25149831 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
25149797 CTTTTCATAT
25149807 TTTTGAAA
1 TTTTGAAA
25149815 TTTTGAAA
1 TTTTGAAA
25149823 TTTTGAAA
1 TTTTGAAA
25149831 T
1 T
25149832 ATTCTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (8 bp):
TTTTGAAA
Found at i:25150245 original size:16 final size:16
Alignment explanation
Indices: 25150221--25150274 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
25150211 TTTGGTTCGC
*
25150221 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
25150237 TGTAATGGATTAGAGG
1 TGTAATGGATTAGAGG
*
25150253 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
25150269 TGTAAT
1 TGTAAT
25150275 AGCAAATCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.28, C:0.00, G:0.35, T:0.37
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:25150525 original size:16 final size:16
Alignment explanation
Indices: 25150488--25150529 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
25150478 TTAATCATAT
*
25150488 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
25150504 TT-AAATATATTATAA
1 TTAAAATATATTATAA
25150519 TTAAAATATAT
1 TTAAAATATAT
25150530 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:25150536 original size:14 final size:15
Alignment explanation
Indices: 25150497--25150538 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
25150487 TTTAAACATA
*
25150497 ATTATTATTAAATAT
1 ATTATAATTAAATAT
25150512 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
25150526 A-TATAATTTAATA
1 ATTATAATTAAATA
25150539 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:25150588 original size:61 final size:61
Alignment explanation
Indices: 25150523--25150830 Score: 250
Period size: 61 Copynumber: 5.1 Consensus size: 61
25150513 TTATAATTAA
25150523 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * *
25150584 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
* *
25150643 AATATATAATTTAATAAAATTCTTAATAATCAAAATTCTTATATGAATTTACTAAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * *
25150704 AATATATAATACT-ATAAAATATAATCTAA-AAT-AATTATTATTAAATAT-AATTTA---ATAT
1 AATATATAAT-TTAATAAAAT-T-CT-TAATAATCAA-TATTCTT--ATATGAATTTACTCAAAT
25150762 -A-
59 CAT
* *
25150763 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATTAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
25150824 AATATAT
1 AATATAT
25150831 GATACTATAA
Statistics
Matches: 191, Mismatches: 30, Indels: 52
0.70 0.11 0.19
Matches are distributed among these distances:
55 4 0.02
56 9 0.05
57 10 0.05
58 7 0.04
59 50 0.26
60 26 0.14
61 56 0.29
62 7 0.04
63 9 0.05
64 9 0.05
65 4 0.02
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.42
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:25150636 original size:120 final size:121
Alignment explanation
Indices: 25150491--25150847 Score: 605
Period size: 120 Copynumber: 3.0 Consensus size: 121
25150481 ATCATATTTA
25150491 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
25150556 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAAT-T
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATCT
25150611 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
* * *
25150676 AATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATAT-AATCT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATCT
* *
25150731 AAAATAATTATTATTAAATATAATT-TAA-TATAAATATATAATTTAATAAAATTCTTAATAATT
1 AACATAATTATTATTAAATAT-ATTATAATTA-AAATATATAATTTAATAAAATTCTTAATAATC
* *
25150794 AATATTCTTATATTAATTTACTCAAATCATAATATATGATACTATAAAAGATAA
64 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
25150848 NNNNNNNNNN
Statistics
Matches: 223, Mismatches: 10, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
119 5 0.02
120 214 0.96
121 4 0.02
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.41
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATCT
Found at i:25150656 original size:14 final size:15
Alignment explanation
Indices: 25150607--25150658 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
25150597 ATAAAATATA
25150607 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
25150622 TATTAAATATATTAT
1 AATTAAATATATTAT
25150637 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
25150650 AATTTAATA
1 AATTAAATA
25150659 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:25150679 original size:16 final size:15
Alignment explanation
Indices: 25150654--25150683 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
25150644 ATATATAATT
25150654 TAATAAAATTCTTAA
1 TAATAAAATTCTTAA
25150669 TAATCAAAATTCTTA
1 TAAT-AAAATTCTTA
25150684 TATGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (15 bp):
TAATAAAATTCTTAA
Found at i:25150771 original size:18 final size:17
Alignment explanation
Indices: 25150748--25150782 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
25150738 TTATTATTAA
25150748 ATATAATTTAATATAAAT
1 ATATAATTTAATA-AAAT
25150766 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
25150783 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:25160119 original size:89 final size:89
Alignment explanation
Indices: 25159968--25160143 Score: 334
Period size: 89 Copynumber: 2.0 Consensus size: 89
25159958 ATGAAATTTT
*
25159968 TGTATATAATTGCATTAAATCGGTGTTCCATATCATGTTGCAAATTCAATTAAAGTTAGTGAAAT
1 TGTATACAATTGCATTAAATCGGTGTTCCATATCATGTTGCAAATTCAATTAAAGTTAGTGAAAT
25160033 GTTGGGATTTATCCCTTGAATTCA
66 GTTGGGATTTATCCCTTGAATTCA
*
25160057 TGTATACAATTGCATTAAATCGGTGTTCCATATCATGTTGCAAATTCAATTAAAGTTTGTGAAAT
1 TGTATACAATTGCATTAAATCGGTGTTCCATATCATGTTGCAAATTCAATTAAAGTTAGTGAAAT
25160122 GTTGGGATTTATCCCTTGAATT
66 GTTGGGATTTATCCCTTGAATT
25160144 GATATTCATG
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 85 1.00
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (89 bp):
TGTATACAATTGCATTAAATCGGTGTTCCATATCATGTTGCAAATTCAATTAAAGTTAGTGAAAT
GTTGGGATTTATCCCTTGAATTCA
Found at i:25187737 original size:30 final size:30
Alignment explanation
Indices: 25187701--25187763 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
25187691 TCACCTGCTA
25187701 CAAAATTTAGAATATTGATATTGTATTCAC
1 CAAAATTTAGAATATTGATATTGTATTCAC
25187731 CAAAATTTAGAATATTGATATTGTATTCAC
1 CAAAATTTAGAATATTGATATTGTATTCAC
25187761 CAA
1 CAA
25187764 TTATAGGAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.38
Consensus pattern (30 bp):
CAAAATTTAGAATATTGATATTGTATTCAC
Found at i:25187975 original size:27 final size:27
Alignment explanation
Indices: 25187921--25187975 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
25187911 TGGGCCCCAC
**
25187921 CACAACCATTTGCGCCTCTGAGGTAGG
1 CACAACCATTTGCGCCTCTGAGAAAGG
*
25187948 CACAATCATTTGCGCCT-TAGAGAAAGG
1 CACAACCATTTGCGCCTCT-GAGAAAGG
25187975 C
1 C
25187976 TCGATTAGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.04
27 23 0.96
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (27 bp):
CACAACCATTTGCGCCTCTGAGAAAGG
Found at i:25192645 original size:23 final size:23
Alignment explanation
Indices: 25192617--25192663 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
25192607 ACTCTAACAT
25192617 CCCTATCTCTATTTACTTTATTC
1 CCCTATCTCTATTTACTTTATTC
25192640 CCCTATCTCTATTTACTTTATTC
1 CCCTATCTCTATTTACTTTATTC
25192663 C
1 C
25192664 TTCTAAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.17, C:0.32, G:0.00, T:0.51
Consensus pattern (23 bp):
CCCTATCTCTATTTACTTTATTC
Found at i:25194947 original size:34 final size:34
Alignment explanation
Indices: 25194909--25194975 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
25194899 ATTGCCATTT
* * *
25194909 AACCCATACTCCTCACAGCTCACCATCAACCAGC
1 AACCCATAATCCTAACAACTCACCATCAACCAGC
*
25194943 AACCCATAATCCTAACAACTCACTATCAACCAG
1 AACCCATAATCCTAACAACTCACCATCAACCAG
25194976 TAAGCCCCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.37, C:0.42, G:0.04, T:0.16
Consensus pattern (34 bp):
AACCCATAATCCTAACAACTCACCATCAACCAGC
Found at i:25209897 original size:14 final size:14
Alignment explanation
Indices: 25209878--25209924 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
25209868 TTAAGTAAAA
*
25209878 ATAATATAATATTT
1 ATAATATAAAATTT
25209892 ATAATATATAAATTT
1 ATAATATA-AAATTT
*
25209907 ATAA-ATAAGATTTT
1 ATAATATAA-AATTT
25209921 ATAA
1 ATAA
25209925 ATTGTCTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 1 0.03
14 19 0.66
15 9 0.31
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (14 bp):
ATAATATAAAATTT
Found at i:25209908 original size:15 final size:16
Alignment explanation
Indices: 25209881--25209910 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
25209871 AGTAAAAATA
25209881 ATATAATATTTATAAT
1 ATATAATATTTATAAT
25209897 ATATAA-ATTTATAA
1 ATATAATATTTATAA
25209911 ATAAGATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATATAATATTTATAAT
Found at i:25209913 original size:16 final size:17
Alignment explanation
Indices: 25209876--25209913 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
25209866 AATTAAGTAA
25209876 AAATAATATAATATTTAT
1 AAAT-ATATAATATTTAT
25209894 -AATATATAA-ATTTAT
1 AAATATATAATATTTAT
25209909 AAATA
1 AAATA
25209914 AGATTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 6 0.32
16 10 0.53
17 3 0.16
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AAATATATAATATTTAT
Found at i:25211501 original size:107 final size:109
Alignment explanation
Indices: 25211362--25211570 Score: 332
Period size: 111 Copynumber: 1.9 Consensus size: 109
25211352 ATAAATATAT
* *
25211362 AATATTAGATTTTGAAAACTTGATATTAAAATAAAATTTAT-A-AAAATTAGCAATTGAATTAAA
1 AATAATAGATTTTGAAAACTTGATATTAAAATAAAATTTATAAGAAAATTAACAATTGAATTAAA
25211425 ATAGGTAGAATGATAAAGATACATATAAATAAATCCTCCAAATG
66 ATAGGTAGAATGATAAAGATACATATAAATAAATCCTCCAAATG
* *
25211469 AATAATAGATTTTGTAAACTTGATATTGAAATAAAATTTATAAAAGAAAATTAACAATTGAATTA
1 AATAATAGATTTTGAAAACTTGATATTAAAATAAAATTTAT--AAGAAAATTAACAATTGAATTA
* *
25211534 AATTAGGTAGAATGATAAAGATGCATATAAATAAATC
64 AAATAGGTAGAATGATAAAGATACATATAAATAAATC
25211571 TTCATTTGTC
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
107 38 0.41
110 1 0.01
111 53 0.58
ACGTcount: A:0.52, C:0.05, G:0.11, T:0.32
Consensus pattern (109 bp):
AATAATAGATTTTGAAAACTTGATATTAAAATAAAATTTATAAGAAAATTAACAATTGAATTAAA
ATAGGTAGAATGATAAAGATACATATAAATAAATCCTCCAAATG
Found at i:25214927 original size:21 final size:21
Alignment explanation
Indices: 25214907--25214945 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
25214897 AACATTTAAT
25214907 TAATTTTTAATT-AATTATAA
1 TAATTTTTAATTAAATTATAA
* *
25214927 TATTTTTTATTTAAATTAT
1 TAATTTTTAATTAAATTAT
25214946 TAAATATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TAATTTTTAATTAAATTATAA
Found at i:25222497 original size:16 final size:16
Alignment explanation
Indices: 25222476--25222506 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
25222466 AGGCACTGTC
25222476 AAAACACAAAAAAAAT
1 AAAACACAAAAAAAAT
25222492 AAAACACAAAAAAAA
1 AAAACACAAAAAAAA
25222507 ATCCCCCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.84, C:0.13, G:0.00, T:0.03
Consensus pattern (16 bp):
AAAACACAAAAAAAAT
Found at i:25222666 original size:12 final size:12
Alignment explanation
Indices: 25222633--25222666 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
25222623 TGAGAAGGGA
*
25222633 TTTTTTTTTTCC
1 TTTTCTTTTTCC
*
25222645 TTTTCCTTTTCC
1 TTTTCTTTTTCC
25222657 TTTTCTTTTT
1 TTTTCTTTTT
25222667 TTTTCTAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTCTTTTTCC
Found at i:25226884 original size:23 final size:21
Alignment explanation
Indices: 25226858--25226910 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 21
25226848 TTAATTTTTT
25226858 AAATCTAAAAATTAAAAATACTA
1 AAATCTAAAAA-TAAAAATAC-A
*
25226881 AAATCCTAAAAATAGAAATACA
1 AAAT-CTAAAAATAAAAATACA
25226903 AAAT-TAAA
1 AAATCTAAA
25226911 TTTGAAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 4 0.14
22 5 0.18
23 12 0.43
24 7 0.25
ACGTcount: A:0.66, C:0.09, G:0.02, T:0.23
Consensus pattern (21 bp):
AAATCTAAAAATAAAAATACA
Found at i:25235295 original size:16 final size:18
Alignment explanation
Indices: 25235262--25235297 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
25235252 AAAAATCACA
25235262 TTTTTACATTTAATATAT
1 TTTTTACATTTAATATAT
25235280 TTTTTA-ATTTCAATATAT
1 TTTTTACATTT-AATATAT
25235298 ATAGTGACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTTACATTTAATATAT
Found at i:25238442 original size:21 final size:21
Alignment explanation
Indices: 25238416--25238456 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
25238406 AGACGAGCAA
* *
25238416 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
25238437 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
25238457 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:25240395 original size:16 final size:16
Alignment explanation
Indices: 25240362--25240395 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
25240352 GGAGATTGTT
* *
25240362 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
25240378 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
25240394 AA
1 AA
25240396 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:25242092 original size:23 final size:23
Alignment explanation
Indices: 25242049--25242092 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
25242039 AATATTATAT
* *
25242049 ATATTAAATGAATAAATTAAAAA
1 ATATTAAATCAATAAAATAAAAA
25242072 ATATTAAATC-ATAAAAATAAA
1 ATATTAAATCAAT-AAAATAAA
25242093 TGTGAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 16 0.89
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (23 bp):
ATATTAAATCAATAAAATAAAAA
Found at i:25242474 original size:17 final size:17
Alignment explanation
Indices: 25242452--25242488 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
25242442 ATAAGAGCAT
25242452 AATAAAATATTTAAAAA
1 AATAAAATATTTAAAAA
25242469 AAT-AAATATTTAAAAA
1 AATAAAATATTTAAAAA
25242485 AATA
1 AATA
25242489 TATAGAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.84
17 3 0.16
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AATAAAATATTTAAAAA
Found at i:25244094 original size:21 final size:21
Alignment explanation
Indices: 25244066--25244116 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
25244056 CTTAAACCCC
25244066 AAGGTTTAGGGTTTGAGATTT
1 AAGGTTTAGGGTTTGAGATTT
*
25244087 ATGGTTTAGGGTTTGAGATTT
1 AAGGTTTAGGGTTTGAGATTT
25244108 AAGGTTTAG
1 AAGGTTTAG
25244117 ATTTAAGGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (21 bp):
AAGGTTTAGGGTTTGAGATTT
Found at i:25244115 original size:7 final size:7
Alignment explanation
Indices: 25244066--25244130 Score: 51
Period size: 7 Copynumber: 9.4 Consensus size: 7
25244056 CTTAAACCCC
25244066 AAGGTTT
1 AAGGTTT
*
25244073 AGGGTTT
1 AAGGTTT
* *
25244080 GAGATTT
1 AAGGTTT
*
25244087 ATGGTTT
1 AAGGTTT
*
25244094 AGGGTTT
1 AAGGTTT
* *
25244101 GAGATTT
1 AAGGTTT
25244108 AAGGTTT
1 AAGGTTT
*
25244115 -AGATTT
1 AAGGTTT
25244121 AAGGTTT
1 AAGGTTT
25244128 AAG
1 AAG
25244131 TATTCAAAGT
Statistics
Matches: 42, Mismatches: 15, Indels: 2
0.71 0.25 0.03
Matches are distributed among these distances:
6 5 0.12
7 37 0.88
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.43
Consensus pattern (7 bp):
AAGGTTT
Found at i:25244120 original size:13 final size:13
Alignment explanation
Indices: 25244091--25244128 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
25244081 AGATTTATGG
*
25244091 TTTAGGGTTTGAGA
1 TTTAAGGTTT-AGA
25244105 TTTAAGGTTTAGA
1 TTTAAGGTTTAGA
25244118 TTTAAGGTTTA
1 TTTAAGGTTTA
25244129 AGTATTCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 14 0.61
14 9 0.39
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (13 bp):
TTTAAGGTTTAGA
Found at i:25244194 original size:21 final size:21
Alignment explanation
Indices: 25244168--25244212 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
25244158 GGTTCAAGGG
25244168 TTCAAGATTACGAGTTTAGGA
1 TTCAAGATTACGAGTTTAGGA
* *
25244189 TTCAAGTTTACGATTTTAGGA
1 TTCAAGATTACGAGTTTAGGA
25244210 TTC
1 TTC
25244213 TATATTTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (21 bp):
TTCAAGATTACGAGTTTAGGA
Found at i:25254927 original size:37 final size:38
Alignment explanation
Indices: 25254886--25254958 Score: 112
Period size: 37 Copynumber: 1.9 Consensus size: 38
25254876 TCCCCACTAT
* * *
25254886 TTTAAATTCAAAGCTATTACTATAAT-TTTTTTTTTGC
1 TTTAAAATAAAAGCTATTACTATAATATTTATTTTTGC
25254923 TTTAAAATAAAAGCTATTACTATAATATTTATTTTT
1 TTTAAAATAAAAGCTATTACTATAATATTTATTTTT
25254959 AGTAATCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
37 24 0.75
38 8 0.25
ACGTcount: A:0.36, C:0.08, G:0.04, T:0.52
Consensus pattern (38 bp):
TTTAAAATAAAAGCTATTACTATAATATTTATTTTTGC
Found at i:25256930 original size:22 final size:21
Alignment explanation
Indices: 25256876--25256931 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
25256866 TTACGGTTGG
25256876 TTTTGTTGTTATTTGCTATCA
1 TTTTGTTGTTATTTGCTATCA
* *
25256897 TTTTATTATTATATTGCTA-CTA
1 TTTTGTTGTTAT-TTGCTATC-A
25256919 TTTTGTTGTTATT
1 TTTTGTTGTTATT
25256932 GTTTTGATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 12 0.41
22 17 0.59
ACGTcount: A:0.18, C:0.07, G:0.11, T:0.64
Consensus pattern (21 bp):
TTTTGTTGTTATTTGCTATCA
Found at i:25260745 original size:19 final size:19
Alignment explanation
Indices: 25260723--25260763 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
25260713 GACTAAATTG
25260723 AAAATATGTAAAATTCATGA
1 AAAAT-TGTAAAATTCATGA
* *
25260743 AAAATTGTAAATTTTATGA
1 AAAATTGTAAAATTCATGA
25260762 AA
1 AA
25260764 TATACGGACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.54, C:0.02, G:0.10, T:0.34
Consensus pattern (19 bp):
AAAATTGTAAAATTCATGA
Found at i:25261443 original size:65 final size:65
Alignment explanation
Indices: 25261306--25261492 Score: 218
Period size: 65 Copynumber: 2.9 Consensus size: 65
25261296 GCGAACATCC
* * * *
25261306 TGATCGGTAGTGATCCTGCATGTGTTGCGGACTAC---CGCAACTCTTTGTGAGCATCCTGTTAT
1 TGATCGGTTGTGATCCTGCATATATTGCGGAC-ACAAACGCAACTCTTTGTGAGCATCCTATTAT
25261368 A
65 A
* * * * * * *
25261369 TGATCGGTTGTGATCTTGCATGTATTGTGGACACAAACGTAGCTCTTTGTGAGCGTCCTATTTTA
1 TGATCGGTTGTGATCCTGCATATATTGCGGACACAAACGCAACTCTTTGTGAGCATCCTATTATA
* * *
25261434 TGATTGGTTGTGATCCTGTATATATTGCGGACACAAACGCAACTCTTTGTGAGTATCCT
1 TGATCGGTTGTGATCCTGCATATATTGCGGACACAAACGCAACTCTTTGTGAGCATCCT
25261493 GATATGGCTC
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
62 2 0.02
63 28 0.27
65 73 0.71
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (65 bp):
TGATCGGTTGTGATCCTGCATATATTGCGGACACAAACGCAACTCTTTGTGAGCATCCTATTATA
Found at i:25262284 original size:20 final size:20
Alignment explanation
Indices: 25262256--25262294 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25262246 GTATGGCAAA
25262256 AATAAAATACATGTGTAATT
1 AATAAAATACATGTGTAATT
* *
25262276 AATATAATACATTTGTAAT
1 AATAAAATACATGTGTAAT
25262295 ACATGTATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (20 bp):
AATAAAATACATGTGTAATT
Found at i:25266557 original size:19 final size:19
Alignment explanation
Indices: 25266530--25266574 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
25266520 TTTGATCAAA
* *
25266530 ATAATAACA-TAATTTTTT
1 ATAAAAACACTAATTTTAT
25266548 CATAAAAACACTAATTTTAT
1 -ATAAAAACACTAATTTTAT
25266568 ATAAAAA
1 ATAAAAA
25266575 AATTTATTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (19 bp):
ATAAAAACACTAATTTTAT
Found at i:25270345 original size:21 final size:21
Alignment explanation
Indices: 25270319--25270362 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
25270309 AGACGAGCAA
* *
25270319 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
25270340 TACTCCAAAACAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
25270361 TA
1 TA
25270363 ACAGCCCAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:25270836 original size:8 final size:8
Alignment explanation
Indices: 25270825--25270853 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
25270815 AAATATAACT
25270825 CTAAACCC
1 CTAAACCC
25270833 CTAAACCC
1 CTAAACCC
25270841 CT-AACCC
1 CTAAACCC
25270848 CTAAAC
1 CTAAAC
25270854 TTTAAATCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.38, C:0.48, G:0.00, T:0.14
Consensus pattern (8 bp):
CTAAACCC
Found at i:25270873 original size:21 final size:22
Alignment explanation
Indices: 25270834--25270874 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
25270824 TCTAAACCCC
25270834 TAAACCCCTAACCCCTAAACTT
1 TAAACCCCTAACCCCTAAACTT
* *
25270856 TAAATCCC-AACCCTTAAAC
1 TAAACCCCTAACCCCTAAAC
25270875 AATAAACCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.22
Consensus pattern (22 bp):
TAAACCCCTAACCCCTAAACTT
Found at i:25271094 original size:16 final size:17
Alignment explanation
Indices: 25271061--25271099 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 17
25271051 AAGAACACTA
25271061 TATTTAATATATTAAAT
1 TATTTAATATATTAAAT
25271078 TATTTAATATA-TAAAT
1 TATTTAATATATTAAAT
25271094 TATTTA
1 TATTTA
25271100 TAAAGAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TATTTAATATATTAAAT
Found at i:25271248 original size:21 final size:20
Alignment explanation
Indices: 25271210--25271277 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 20
25271200 AATTAATCTA
* *
25271210 AACCCTAAATCCTAAACCCCT
1 AACCTTAAA-CCTCAACCCCT
25271231 AACTCTT-AACTCTCAACCCCT
1 AAC-CTTAAAC-CTCAACCCCT
*
25271252 AAACCTTAAACCTCAACCCTT
1 -AACCTTAAACCTCAACCCCT
25271273 AACCT
1 AACCT
25271278 ATAACATTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
20 6 0.15
21 26 0.65
22 8 0.20
ACGTcount: A:0.35, C:0.41, G:0.00, T:0.24
Consensus pattern (20 bp):
AACCTTAAACCTCAACCCCT
Found at i:25271336 original size:7 final size:7
Alignment explanation
Indices: 25271285--25271373 Score: 61
Period size: 7 Copynumber: 12.6 Consensus size: 7
25271275 CCTATAACAT
25271285 TAAACCA
1 TAAACCA
*
25271292 TAAACCG
1 TAAACCA
* * *
25271299 CAACCCT
1 TAAACCA
*
25271306 TAAACCC
1 TAAACCA
* *
25271313 TAAATCT
1 TAAACCA
25271320 TAAACCA
1 TAAACCA
*
25271327 TAAACTA
1 TAAACCA
25271334 TAAACCA
1 TAAACCA
* *
25271341 TAACCCT
1 TAAACCA
25271348 TAAACTCA
1 TAAAC-CA
*
25271356 TAATCCA
1 TAAACCA
*
25271363 TAAACCT
1 TAAACCA
25271370 TAAA
1 TAAA
25271374 ATAGTAACTC
Statistics
Matches: 61, Mismatches: 20, Indels: 2
0.73 0.24 0.02
Matches are distributed among these distances:
7 56 0.92
8 5 0.08
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.22
Consensus pattern (7 bp):
TAAACCA
Found at i:25271363 original size:22 final size:21
Alignment explanation
Indices: 25271284--25271431 Score: 82
Period size: 21 Copynumber: 7.0 Consensus size: 21
25271274 ACCTATAACA
* ** *
25271284 TTAAACCATAAACCGCAACCC
1 TTAAACTATAAACCATAAACC
** * *
25271305 TTAAACCCTAAATCTTAAACC
1 TTAAACTATAAACCATAAACC
* *
25271326 ATAAACTATAAACCATAACCC
1 TTAAACTATAAACCATAAACC
*
25271347 TTAAACTCATAATCCATAAACC
1 TTAAACT-ATAAACCATAAACC
* *
25271369 TTAAAATAGT-AACTCTTAAACC
1 TTAAACTA-TAAAC-CATAAACC
* * *
25271391 TTAAACTCTAAATCATATACC
1 TTAAACTATAAACCATAAACC
* * * *
25271412 CTAAACCAAAAACCTTAAAC
1 TTAAACTATAAACCATAAAC
25271432 TATAGAGATA
Statistics
Matches: 94, Mismatches: 29, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
21 60 0.64
22 34 0.36
ACGTcount: A:0.47, C:0.28, G:0.01, T:0.24
Consensus pattern (21 bp):
TTAAACTATAAACCATAAACC
Found at i:25271713 original size:19 final size:20
Alignment explanation
Indices: 25271687--25271732 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
25271677 ATAGAATTTT
25271687 AATT-AATA-TAAATAAACA
1 AATTAAATAGTAAATAAACA
* *
25271705 AATTAAATAGTAATTAGACA
1 AATTAAATAGTAAATAAACA
*
25271725 AATAAAAT
1 AATTAAAT
25271733 GTTTTTGCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 4 0.17
19 4 0.17
20 15 0.65
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.28
Consensus pattern (20 bp):
AATTAAATAGTAAATAAACA
Found at i:25271796 original size:41 final size:41
Alignment explanation
Indices: 25271739--25271847 Score: 173
Period size: 41 Copynumber: 2.7 Consensus size: 41
25271729 AAATGTTTTT
* *
25271739 GCGGCGCTTTTCCAAAAACGCTGCTAAAGACCAGAGCATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAAACCAGAGCATTA
*
25271780 GCGGCGCTTCTCCAAAAACGCCGCTAAAAACCAGAGCATTA
1 GCGGCGCTTTTCCAAAAACGCCGCTAAAAACCAGAGCATTA
* *
25271821 GCGGCACTTTTCTAAAAACGCCGCTAA
1 GCGGCGCTTTTCCAAAAACGCCGCTAA
25271848 TGTCCCGAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.18
Consensus pattern (41 bp):
GCGGCGCTTTTCCAAAAACGCCGCTAAAAACCAGAGCATTA
Found at i:25276233 original size:24 final size:24
Alignment explanation
Indices: 25276201--25276251 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
25276191 AATCAAAGTC
* * *
25276201 AAATATATTATGCTTATAAATGCT
1 AAATATATTATACTCATAAATACT
25276225 AAATATATTATACTCATAAATACT
1 AAATATATTATACTCATAAATACT
25276249 AAA
1 AAA
25276252 ACTTCTAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTCATAAATACT
Found at i:25280853 original size:22 final size:22
Alignment explanation
Indices: 25280828--25280871 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
25280818 TATATATAGT
*
25280828 GGGAAAA-AAAGAAGAAGAAAAA
1 GGGAAAAGAAA-AAGAAAAAAAA
25280850 GGGAAAAGAAAAAGAAAAAAAA
1 GGGAAAAGAAAAAGAAAAAAAA
25280872 AAGTGAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (22 bp):
GGGAAAAGAAAAAGAAAAAAAA
Found at i:25280862 original size:6 final size:6
Alignment explanation
Indices: 25280833--25280874 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
25280823 ATAGTGGGAA
* *
25280833 AAAAAG AAGAAG AAAAAGG GAAAAG AAAAAG AAAAA- AAAAAG
1 AAAAAG AAAAAG AAAAA-G AAAAAG AAAAAG AAAAAG AAAAAG
25280875 TGAACAATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 5 0.17
6 20 0.67
7 5 0.17
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:25301066 original size:26 final size:27
Alignment explanation
Indices: 25301033--25301083 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
25301023 TAAATATATA
25301033 TTTTTA-TTTTTTAATTTTAAAATACT
1 TTTTTATTTTTTTAATTTTAAAATACT
*
25301059 TTTTTATTTTTTTATTTTTAAAATA
1 TTTTTATTTTTTTAATTTTAAAATA
25301084 AATTTTTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (27 bp):
TTTTTATTTTTTTAATTTTAAAATACT
Found at i:25301089 original size:27 final size:26
Alignment explanation
Indices: 25301023--25301090 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
25301013 GAATATATAA
*
25301023 TAAATATATATTTTTATTTTTTAATTT
1 TAAA-ATAAATTTTTATTTTTTAATTT
** *
25301050 TAAAATACTTTTTTATTTTTTTATTTT
1 TAAAATAAATTTTTA-TTTTTTAATTT
25301077 TAAAATAAATTTTT
1 TAAAATAAATTTTT
25301091 GGTGTTTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 9 0.26
27 26 0.74
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (26 bp):
TAAAATAAATTTTTATTTTTTAATTT
Found at i:25330821 original size:16 final size:16
Alignment explanation
Indices: 25330800--25330832 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
25330790 TTGGCAGAAA
25330800 TGTCTCA-AAGGACTGT
1 TGTCTCAGAA-GACTGT
25330816 TGTCTCAGAAGACTGT
1 TGTCTCAGAAGACTGT
25330832 T
1 T
25330833 ATTTATGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (16 bp):
TGTCTCAGAAGACTGT
Found at i:25335680 original size:16 final size:16
Alignment explanation
Indices: 25335659--25335691 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
25335649 TTGGCAGAAA
25335659 TGTCTCA-AAGGACTGT
1 TGTCTCAGAA-GACTGT
25335675 TGTCTCAGAAGACTGT
1 TGTCTCAGAAGACTGT
25335691 T
1 T
25335692 ATTTATGCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.88
17 2 0.12
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (16 bp):
TGTCTCAGAAGACTGT
Found at i:25342251 original size:15 final size:15
Alignment explanation
Indices: 25342231--25342260 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
25342221 CCTTTCTCTC
25342231 TTTTCTTTCTTTTCT
1 TTTTCTTTCTTTTCT
25342246 TTTTCTTTCTTTTCT
1 TTTTCTTTCTTTTCT
25342261 AATTTGCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTCTTTCTTTTCT
Found at i:25346125 original size:23 final size:24
Alignment explanation
Indices: 25346095--25346148 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
25346085 TTTTTAAAAC
25346095 TTTT-TCCCCT-ATTTTTGTTTGA
1 TTTTGTCCCCTAATTTTTGTTTGA
*
25346117 TTTTGTCCCGTAATTTTTGTTTGA
1 TTTTGTCCCCTAATTTTTGTTTGA
*
25346141 TTTAGTCC
1 TTTTGTCC
25346149 ATAATGTTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 4 0.14
23 5 0.18
24 19 0.68
ACGTcount: A:0.11, C:0.17, G:0.13, T:0.59
Consensus pattern (24 bp):
TTTTGTCCCCTAATTTTTGTTTGA
Found at i:25346153 original size:23 final size:24
Alignment explanation
Indices: 25346105--25346153 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
25346095 TTTTTCCCCT
* *
25346105 ATTTTTGTTTGATTTTGTCCCGTA
1 ATTTTTGTTTGATTTAGTCCCATA
25346129 ATTTTTGTTTGATTTAGT-CCATA
1 ATTTTTGTTTGATTTAGTCCCATA
25346152 AT
1 AT
25346154 GTTGACTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.18, C:0.10, G:0.14, T:0.57
Consensus pattern (24 bp):
ATTTTTGTTTGATTTAGTCCCATA
Found at i:25349135 original size:104 final size:104
Alignment explanation
Indices: 25348947--25349152 Score: 367
Period size: 104 Copynumber: 2.0 Consensus size: 104
25348937 ATAGAAGAAT
* *
25348947 TTCGTCAGGCTTTGGATGACTGCTCGTTAGCTAATCTGGGCTTCAAATGACCCTAGTATATATGG
1 TTCGTCAGGATTTGGATGACTGCTCGTTAGCTAATCTGGGCTTCAAATGACCCTAGTATACATGG
*
25349012 GAAAGAGGGCAGAGCTCTGAAACCAATATTCGGGAGCAA
66 GAAAGAGGGCAAAGCTCTGAAACCAATATTCGGGAGCAA
*
25349051 TTCGTCAGGATTTGGATGACTGCTCGTTAGCTAATCTGGGCTTCAAATGACCCTAGTTTACATGG
1 TTCGTCAGGATTTGGATGACTGCTCGTTAGCTAATCTGGGCTTCAAATGACCCTAGTATACATGG
*
25349116 GAAAGAGGGCAAAGTTCTGAAACCAATATTCGGGAGC
66 GAAAGAGGGCAAAGCTCTGAAACCAATATTCGGGAGC
25349153 TGTTGGATAG
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
104 97 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (104 bp):
TTCGTCAGGATTTGGATGACTGCTCGTTAGCTAATCTGGGCTTCAAATGACCCTAGTATACATGG
GAAAGAGGGCAAAGCTCTGAAACCAATATTCGGGAGCAA
Found at i:25353200 original size:17 final size:17
Alignment explanation
Indices: 25353175--25353208 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25353165 CCACACGTCT
*
25353175 GCCATATGGCCATATGC
1 GCCACATGGCCATATGC
25353192 GCCACATGGCCATATGC
1 GCCACATGGCCATATGC
25353209 CAGACCATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.21
Consensus pattern (17 bp):
GCCACATGGCCATATGC
Found at i:25354047 original size:13 final size:13
Alignment explanation
Indices: 25354029--25354053 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25354019 TTGTCGTGTT
25354029 ATTTAGTTAATTA
1 ATTTAGTTAATTA
25354042 ATTTAGTTAATT
1 ATTTAGTTAATT
25354054 TTATTTTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
ATTTAGTTAATTA
Found at i:25355152 original size:22 final size:22
Alignment explanation
Indices: 25355127--25355169 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
25355117 GTATACTTTT
* *
25355127 AATTAACATTATAAATTAAAAA
1 AATTAAAAATATAAATTAAAAA
*
25355149 AATTAAAAATATCAATTAAAA
1 AATTAAAAATATAAATTAAAA
25355170 TTTATTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (22 bp):
AATTAAAAATATAAATTAAAAA
Found at i:25358717 original size:3 final size:3
Alignment explanation
Indices: 25358709--25358737 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
25358699 GCCTCTACTT
25358709 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
25358738 TTTTGTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:25366591 original size:30 final size:30
Alignment explanation
Indices: 25366548--25366665 Score: 146
Period size: 30 Copynumber: 3.9 Consensus size: 30
25366538 CACAGGCTAG
* *
25366548 CACATGGGCGTGTGGCTAGCCCGTGTGGCT
1 CACACGGGCGTGTGGCCAGCCCGTGTGGCT
* * * * *
25366578 CACACGGGTGTGTGTCTAGTCCGTATGGCT
1 CACACGGGCGTGTGGCCAGCCCGTGTGGCT
* *
25366608 CACACGGGCGTATGTCCAGCCCGTGTGGCT
1 CACACGGGCGTGTGGCCAGCCCGTGTGGCT
*
25366638 CACACGGGCGTGTGGCCAACCCGTGTGG
1 CACACGGGCGTGTGGCCAGCCCGTGTGG
25366666 AAATGCCCAG
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 75 1.00
ACGTcount: A:0.13, C:0.29, G:0.36, T:0.22
Consensus pattern (30 bp):
CACACGGGCGTGTGGCCAGCCCGTGTGGCT
Found at i:25366981 original size:10 final size:10
Alignment explanation
Indices: 25366968--25366992 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
25366958 ATTAACAAAT
25366968 AAATAATATA
1 AAATAATATA
25366978 AAATAATATA
1 AAATAATATA
25366988 AAATA
1 AAATA
25366993 TAGTTACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AAATAATATA
Found at i:25368164 original size:31 final size:31
Alignment explanation
Indices: 25368099--25368158 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
25368089 TGGAATTGGG
*
25368099 TTTCCATACTTTAATAGCTTTCTTGCTCTTT
1 TTTCCATACTTTAATAGCTTTCTTGCACTTT
* *
25368130 TTTCCAT-CTTT-ATGGTTTTCTTGCACTTT
1 TTTCCATACTTTAATAGCTTTCTTGCACTTT
25368159 CTTTTCACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 15 0.58
30 4 0.15
31 7 0.27
ACGTcount: A:0.13, C:0.22, G:0.08, T:0.57
Consensus pattern (31 bp):
TTTCCATACTTTAATAGCTTTCTTGCACTTT
Found at i:25371305 original size:20 final size:20
Alignment explanation
Indices: 25371280--25371321 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
25371270 AATTTCATCC
25371280 ATAGATAACACATGTGATGG
1 ATAGATAACACATGTGATGG
25371300 ATAGATAACACATGTGATGG
1 ATAGATAACACATGTGATGG
25371320 AT
1 AT
25371322 TTAATTGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (20 bp):
ATAGATAACACATGTGATGG
Found at i:25378786 original size:337 final size:337
Alignment explanation
Indices: 25378165--25378838 Score: 1233
Period size: 337 Copynumber: 2.0 Consensus size: 337
25378155 TGTGCAATGG
25378165 CTCCATTGTTATCACATCGGAGTTCTATAGCATCTGATATGCTAGGCACAACCCCTAGTTCAGTA
1 CTCCATTGTTATCACATCGGAGTTCTATAGCATCTGATATGCTAGGCACAACCCCTAGTTCAGTA
*
25378230 ATGAACTTTTTGATCCAAACCGCTTCTTTTGCTGCCTCACTGGCTGCAATATACTCAGCCTCTGT
66 ATAAACTTTTTGATCCAAACCGCTTCTTTTGCTGCCTCACTGGCTGCAATATACTCAGCCTCTGT
*
25378295 TGTAGAATCGGCTACTGTACTTTGCTTTGAACTCTTCCAGCTCACAGCACCACCATTAAGGCAAA
131 TGTAGAATCGGCTACAGTACTTTGCTTTGAACTCTTCCAGCTCACAGCACCACCATTAAGGCAAA
25378360 ACACAAAACCTGATTGTGATCGAGAATCGTCCTTATCGGTTTGGAAGCTGGCATCAGTGTAACCT
196 ACACAAAACCTGATTGTGATCGAGAATCGTCCTTATCGGTTTGGAAGCTGGCATCAGTGTAACCT
* *
25378425 TTTACACTTAACTCTTCATCACCTCCATATATTA-GAAAAGTATCCTCAGTCCTTCTCAAGTACT
261 TTTACACTTAACTCTTCATCACCTCCATATAGTAGGAAAA-CATCCTCAGTCCTTCTCAAGTACT
25378489 TAAGGATATTCTT
325 TAAGGATATTCTT
*
25378502 CTCCATTGTTATCACATCGGAGTTCTATAGCATCTGATATGCTTGGCACAACCCCTAGTTCAGTA
1 CTCCATTGTTATCACATCGGAGTTCTATAGCATCTGATATGCTAGGCACAACCCCTAGTTCAGTA
* * *
25378567 ATAAACTTTTTGATCCAAACTGCTTCTTTTGCTGCCTCATTGGCTGCAATATACTCGGCCTCTGT
66 ATAAACTTTTTGATCCAAACCGCTTCTTTTGCTGCCTCACTGGCTGCAATATACTCAGCCTCTGT
25378632 TGTAGAATCGGCTACAGTACTTTGCTTTGAACTCTTCCAGCTCACAGCACCACCATTAAGGCAAA
131 TGTAGAATCGGCTACAGTACTTTGCTTTGAACTCTTCCAGCTCACAGCACCACCATTAAGGCAAA
25378697 ACACAAAACCTGATTGTGATCGAGAATCGTCCTTATCGGTTTGGAAGCTGGCATCAGTGTAACCT
196 ACACAAAACCTGATTGTGATCGAGAATCGTCCTTATCGGTTTGGAAGCTGGCATCAGTGTAACCT
* * *
25378762 TTTACACTTAACTCTTCCTCACCTCCATATAGTAGGAAAACATCCTTAGTTCTTCTCAAGTACTT
261 TTTACACTTAACTCTTCATCACCTCCATATAGTAGGAAAACATCCTCAGTCCTTCTCAAGTACTT
25378827 AAGGATATTCTT
326 AAGGATATTCTT
25378839 GACTGTGGTC
Statistics
Matches: 325, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
337 320 0.98
338 5 0.02
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (337 bp):
CTCCATTGTTATCACATCGGAGTTCTATAGCATCTGATATGCTAGGCACAACCCCTAGTTCAGTA
ATAAACTTTTTGATCCAAACCGCTTCTTTTGCTGCCTCACTGGCTGCAATATACTCAGCCTCTGT
TGTAGAATCGGCTACAGTACTTTGCTTTGAACTCTTCCAGCTCACAGCACCACCATTAAGGCAAA
ACACAAAACCTGATTGTGATCGAGAATCGTCCTTATCGGTTTGGAAGCTGGCATCAGTGTAACCT
TTTACACTTAACTCTTCATCACCTCCATATAGTAGGAAAACATCCTCAGTCCTTCTCAAGTACTT
AAGGATATTCTT
Found at i:25382318 original size:14 final size:14
Alignment explanation
Indices: 25382299--25382331 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
25382289 TATATCAATC
*
25382299 ATTAAAAGGACTTT
1 ATTAAAAGGACTTA
25382313 ATT-AAAGGACTTA
1 ATTAAAAGGACTTA
25382326 ATTAAA
1 ATTAAA
25382332 TGATGTTCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.33
Consensus pattern (14 bp):
ATTAAAAGGACTTA
Found at i:25383812 original size:381 final size:381
Alignment explanation
Indices: 25383109--25383872 Score: 1456
Period size: 381 Copynumber: 2.0 Consensus size: 381
25383099 TGCAGATTAC
25383109 AATATGTAGAAACTCGTTTTACATACGAGGGAGTAAGATGAGAAGAGAAATACAAGAGAATAGTA
1 AATATGTAGAAACTCGTTTTACATACGAGGGAGTAAGATGAGAAGAGAAATACAAGAGAATAGTA
*
25383174 GCAAGGCACGACACGCAGGCCGTATTTATAAAATTACAACCTTTTATCAAATGGGCTGTCGGGCT
66 GCAAGGCAAGACACGCAGGCCGTATTTATAAAATTACAACCTTTTATCAAATGGGCTGTCGGGCT
*
25383239 ATAACTATGCATTTCAAACACTGTGCATATCAAAAATAGCATAAATAAATAAACACTTGTGTTAA
131 ATAACTATGCATTTCAAACACCGTGCATATCAAAAATAGCATAAATAAATAAACACTTGTGTTAA
25383304 GGTGTATGAAAACATATCCTTTCAACTTTTATGGCCCATCAAGTTTTATTTATTAAAAAAAACAT
196 GGTGTATGAAAACATATCCTTTCAACTTTTATGGCCCATCAAGTTTTATTTATTAAAAAAAACAT
25383369 ACTTTAAGAAGATGGGGGCTGAGACAGTGGAGGGAACGGGCCGAAGGCCCACGAGGGGGAGCCCC
261 ACTTTAAGAAGATGGGGGCTGAGACAGTGGAGGGAACGGGCCGAAGGCCCACGAGGGGGAGCCCC
25383434 CGCGGTATGAATCGCATACCCCATTCAAACCTCACGATTCGATAACTGTTACCGAA
326 CGCGGTATGAATCGCATACCCCATTCAAACCTCACGATTCGATAACTGTTACCGAA
*
25383490 AATATGTAGAAACTCGTTTTACATATGAGGGAGTAAGATGAGAAGAGAAATACAAGAGAATAGTA
1 AATATGTAGAAACTCGTTTTACATACGAGGGAGTAAGATGAGAAGAGAAATACAAGAGAATAGTA
* *
25383555 GCAATGCAAGACACGCAGGCCGTTTTTATAAAATTACAACCTTTTATCAAATGGGCTGTCGGGCT
66 GCAAGGCAAGACACGCAGGCCGTATTTATAAAATTACAACCTTTTATCAAATGGGCTGTCGGGCT
* *
25383620 ATAACTATGCATTTCAAACACCGTGCATATCAAAAATAGCATACATAAATAAACACTTTTGTTAA
131 ATAACTATGCATTTCAAACACCGTGCATATCAAAAATAGCATAAATAAATAAACACTTGTGTTAA
*
25383685 GGTGTATTAAAACATATCCTTTCAACTTTTATGGCCCATCAAGTTTTATTTATTAAAAAAAACAT
196 GGTGTATGAAAACATATCCTTTCAACTTTTATGGCCCATCAAGTTTTATTTATTAAAAAAAACAT
25383750 ACTTTAAGAAGATGGGGGCTGAGACAGTGGAGGGAACGGGCCGAAGGCCCACGAGGGGGAGCCCC
261 ACTTTAAGAAGATGGGGGCTGAGACAGTGGAGGGAACGGGCCGAAGGCCCACGAGGGGGAGCCCC
25383815 CGCGGTATGAATCGCATACCCCATTCAAACCTCACGATTCGATAACTGTTACCGAA
326 CGCGGTATGAATCGCATACCCCATTCAAACCTCACGATTCGATAACTGTTACCGAA
25383871 AA
1 AA
25383873 AATCGTGTTT
Statistics
Matches: 375, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
381 375 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (381 bp):
AATATGTAGAAACTCGTTTTACATACGAGGGAGTAAGATGAGAAGAGAAATACAAGAGAATAGTA
GCAAGGCAAGACACGCAGGCCGTATTTATAAAATTACAACCTTTTATCAAATGGGCTGTCGGGCT
ATAACTATGCATTTCAAACACCGTGCATATCAAAAATAGCATAAATAAATAAACACTTGTGTTAA
GGTGTATGAAAACATATCCTTTCAACTTTTATGGCCCATCAAGTTTTATTTATTAAAAAAAACAT
ACTTTAAGAAGATGGGGGCTGAGACAGTGGAGGGAACGGGCCGAAGGCCCACGAGGGGGAGCCCC
CGCGGTATGAATCGCATACCCCATTCAAACCTCACGATTCGATAACTGTTACCGAA
Found at i:25398067 original size:26 final size:25
Alignment explanation
Indices: 25398034--25398104 Score: 88
Period size: 26 Copynumber: 2.8 Consensus size: 25
25398024 TCTAATCCCA
*
25398034 ATTTTACCCTTGATAAAATTATAACG
1 ATTTTACCC-TGGTAAAATTATAACG
* * *
25398060 ATTTTACCCCGGTAAAATTATGATG
1 ATTTTACCCTGGTAAAATTATAACG
25398085 ATTTTACCCCTGGTAAAATT
1 ATTTTA-CCCTGGTAAAATT
25398105 TCGAGAAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 18 0.46
26 21 0.54
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (25 bp):
ATTTTACCCTGGTAAAATTATAACG
Found at i:25398080 original size:25 final size:26
Alignment explanation
Indices: 25398034--25398104 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 26
25398024 TCTAATCCCA
* *
25398034 ATTTTACCCTTGATAAAATTATAACG
1 ATTTTACCCCTGGTAAAATTATAACG
* *
25398060 ATTTTACCCC-GGTAAAATTATGATG
1 ATTTTACCCCTGGTAAAATTATAACG
25398085 ATTTTACCCCTGGTAAAATT
1 ATTTTACCCCTGGTAAAATT
25398105 TCGAGAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 22 0.55
26 18 0.45
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (26 bp):
ATTTTACCCCTGGTAAAATTATAACG
Found at i:25406497 original size:51 final size:52
Alignment explanation
Indices: 25406426--25406529 Score: 183
Period size: 51 Copynumber: 2.0 Consensus size: 52
25406416 AATAATTTTC
*
25406426 TTTTAACTCAAATCTTTCTTTTATCGTTTACCATTAACCAAATCAAATCAAA
1 TTTTAACTCAAATCTTTCTTTTATAGTTTACCATTAACCAAATCAAATCAAA
*
25406478 TTTTAACTC-AATCTTTCTTTTATAGTTTACCATTAACGAAATCAAATCAAA
1 TTTTAACTCAAATCTTTCTTTTATAGTTTACCATTAACCAAATCAAATCAAA
25406529 T
1 T
25406530 CAAATTTAGA
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 41 0.82
52 9 0.18
ACGTcount: A:0.37, C:0.19, G:0.03, T:0.41
Consensus pattern (52 bp):
TTTTAACTCAAATCTTTCTTTTATAGTTTACCATTAACCAAATCAAATCAAA
Found at i:25411914 original size:61 final size:59
Alignment explanation
Indices: 25411764--25411961 Score: 188
Period size: 61 Copynumber: 3.2 Consensus size: 59
25411754 CAGAAATAAA
* * * *
25411764 ATTATTTTAATAAT-TTT-ATATTAAATTTAATTTAATACTTATCTCAG-TAATATTTTATT
1 ATTAATTTAATAATATTTAATATTAAATTTAATTTAATATTTATGT-AGATAA-ATATTA-T
*
25411823 AATTTAATATTAAAGTGATTATCTTAATATTAAATTTAATTTAATATTTATCTTGTAGATAAA-A
1 -A-TTAAT-TT-AA-T-AATAT-TTAATATTAAATTTAATTTAATATTTA---TGTAGATAAATA
25411887 TTAT
56 TTAT
* *
25411891 ATTATTTTAATAATATTTAATATTAAATTTAATTTAATATTTATGTTGATAAATATTAT
1 ATTAATTTAATAATATTTAATATTAAATTTAATTTAATATTTATGTAGATAAATATTAT
25411950 ATTAATTTAATA
1 ATTAATTTAATA
25411962 TTAAAGTGGT
Statistics
Matches: 116, Mismatches: 9, Indels: 27
0.76 0.06 0.18
Matches are distributed among these distances:
58 9 0.08
59 16 0.14
60 1 0.01
61 31 0.27
62 6 0.05
63 3 0.03
64 3 0.03
65 4 0.03
66 5 0.04
67 3 0.03
68 24 0.21
69 3 0.03
70 3 0.03
71 5 0.04
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.53
Consensus pattern (59 bp):
ATTAATTTAATAATATTTAATATTAAATTTAATTTAATATTTATGTAGATAAATATTAT
Found at i:25412873 original size:17 final size:17
Alignment explanation
Indices: 25412839--25412874 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
25412829 AATTAATAAA
**
25412839 TTAAAACCAAGTTGTTG
1 TTAAAACCAAGTAATTG
25412856 TTAAAACCAAGTAATTG
1 TTAAAACCAAGTAATTG
25412873 TT
1 TT
25412875 TAATAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (17 bp):
TTAAAACCAAGTAATTG
Found at i:25413546 original size:7 final size:7
Alignment explanation
Indices: 25413534--25413563 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
25413524 ACTTTTTCAA
25413534 TCATCCC
1 TCATCCC
25413541 TCATCCC
1 TCATCCC
25413548 TCATCCC
1 TCATCCC
*
25413555 TCAACCC
1 TCATCCC
25413562 TC
1 TC
25413564 CCATCTCTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.17, C:0.57, G:0.00, T:0.27
Consensus pattern (7 bp):
TCATCCC
Found at i:25414171 original size:7 final size:7
Alignment explanation
Indices: 25414159--25414188 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
25414149 ACTTTTTCAA
25414159 TCATCCC
1 TCATCCC
25414166 TCATCCC
1 TCATCCC
25414173 TCATCCC
1 TCATCCC
*
25414180 TCAACCC
1 TCATCCC
25414187 TC
1 TC
25414189 CCATCTCTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.17, C:0.57, G:0.00, T:0.27
Consensus pattern (7 bp):
TCATCCC
Found at i:25414270 original size:625 final size:625
Alignment explanation
Indices: 25413075--25414325 Score: 2493
Period size: 625 Copynumber: 2.0 Consensus size: 625
25413065 TTAATAATTC
*
25413075 ATTTTCAATATTTCATTAATAAAATTGGGTTTAATTAATTAAGTAAATTGATTAATTAAAGTGGT
1 ATTTTAAATATTTCATTAATAAAATTGGGTTTAATTAATTAAGTAAATTGATTAATTAAAGTGGT
25413140 TAAATTAATTCATTTGGTCCTCTAAACTATCTACTATTTTTGACAGGTTTGAGAGTTTTCTTCTG
66 TAAATTAATTCATTTGGTCCTCTAAACTATCTACTATTTTTGACAGGTTTGAGAGTTTTCTTCTG
25413205 ATTGCAAAACCGTCAAAAGTGGGGACCAAGTCAACCCAATTTTTGGCTGCACATGGCTGATTATA
131 ATTGCAAAACCGTCAAAAGTGGGGACCAAGTCAACCCAATTTTTGGCTGCACATGGCTGATTATA
25413270 AACCACTTTTTGGTTTAATTATACAAGGCCCTTGAAGAGTTGAAGAAATTAGAGATTTACCTGAA
196 AACCACTTTTTGGTTTAATTATACAAGGCCCTTGAAGAGTTGAAGAAATTAGAGATTTACCTGAA
25413335 GATTTGTTGGAGACCGAGTCTTAGTCCTGAGTTGTTGTGGCATTCAAATTGACCAAAAATTAAGG
261 GATTTGTTGGAGACCGAGTCTTAGTCCTGAGTTGTTGTGGCATTCAAATTGACCAAAAATTAAGG
25413400 AAAAATCAGACACATTTCCTCAATTCATGGCCGACCACTCTTGGAGGAGGTTTCAAAGGATGGAC
326 AAAAATCAGACACATTTCCTCAATTCATGGCCGACCACTCTTGGAGGAGGTTTCAAAGGATGGAC
25413465 ACTCTTAATTTTAGCAAACTAGCTCAATTGCCTCACCTATAAATAAGAGCTCATTTCTCACTTTT
391 ACTCTTAATTTTAGCAAACTAGCTCAATTGCCTCACCTATAAATAAGAGCTCATTTCTCACTTTT
25413530 TCAATCATCCCTCATCCCTCATCCCTCAACCCTCCCATCTCTCATCCTCTCTCTCAATTCTCTTA
456 TCAATCATCCCTCATCCCTCATCCCTCAACCCTCCCATCTCTCATCCTCTCTCTCAATTCTCTTA
25413595 GCTCTCACGCCTATCATCATCCTTGCATAAGGATTTTAGCAAATTAGCCTCTTAAAGAGCCCTTG
521 GCTCTCACGCCTATCATCATCCTTGCATAAGGATTTTAGCAAATTAGCCTCTTAAAGAGCCCTTG
25413660 GTCGACCACTTTGGAGAACCATCAACAAATGAGCAACGCA
586 GTCGACCACTTTGGAGAACCATCAACAAATGAGCAACGCA
25413700 ATTTTAAATATTTCATTAATAAAATTGGGTTTAATTAATTAAGTAAATTGATTAATTAAAGTGGT
1 ATTTTAAATATTTCATTAATAAAATTGGGTTTAATTAATTAAGTAAATTGATTAATTAAAGTGGT
25413765 TAAATTAATTCATTTGGTCCTCTAAACTATCTACTATTTTTGACAGGTTTGAGAGTTTTCTTCTG
66 TAAATTAATTCATTTGGTCCTCTAAACTATCTACTATTTTTGACAGGTTTGAGAGTTTTCTTCTG
25413830 ATTGCAAAACCGTCAAAAGTGGGGACCAAGTCAACCCAATTTTTGGCTGCACATGGCTGATTATA
131 ATTGCAAAACCGTCAAAAGTGGGGACCAAGTCAACCCAATTTTTGGCTGCACATGGCTGATTATA
25413895 AACCACTTTTTGGTTTAATTATACAAGGCCCTTGAAGAGTTGAAGAAATTAGAGATTTACCTGAA
196 AACCACTTTTTGGTTTAATTATACAAGGCCCTTGAAGAGTTGAAGAAATTAGAGATTTACCTGAA
25413960 GATTTGTTGGAGACCGAGTCTTAGTCCTGAGTTGTTGTGGCATTCAAATTGACCAAAAATTAAGG
261 GATTTGTTGGAGACCGAGTCTTAGTCCTGAGTTGTTGTGGCATTCAAATTGACCAAAAATTAAGG
25414025 AAAAATCAGACACATTTCCTCAATTCATGGCCGACCACTCTTGGAGGAGGTTTCAAAGGATGGAC
326 AAAAATCAGACACATTTCCTCAATTCATGGCCGACCACTCTTGGAGGAGGTTTCAAAGGATGGAC
25414090 ACTCTTAATTTTAGCAAACTAGCTCAATTGCCTCACCTATAAATAAGAGCTCATTTCTCACTTTT
391 ACTCTTAATTTTAGCAAACTAGCTCAATTGCCTCACCTATAAATAAGAGCTCATTTCTCACTTTT
25414155 TCAATCATCCCTCATCCCTCATCCCTCAACCCTCCCATCTCTCATCCTCTCTCTCAATTCTCTTA
456 TCAATCATCCCTCATCCCTCATCCCTCAACCCTCCCATCTCTCATCCTCTCTCTCAATTCTCTTA
25414220 GCTCTCACGCCTATCATCATCCTTGCATAAGGATTTTAGCAAATTAGCCTCTTAAAGAGCCCTTG
521 GCTCTCACGCCTATCATCATCCTTGCATAAGGATTTTAGCAAATTAGCCTCTTAAAGAGCCCTTG
25414285 GTCGACCACTTTGGAGAACCATCAACAAATGAGCAACGCA
586 GTCGACCACTTTGGAGAACCATCAACAAATGAGCAACGCA
25414325 A
1 A
25414326 AGAAGCGAAG
Statistics
Matches: 625, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
625 625 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.33
Consensus pattern (625 bp):
ATTTTAAATATTTCATTAATAAAATTGGGTTTAATTAATTAAGTAAATTGATTAATTAAAGTGGT
TAAATTAATTCATTTGGTCCTCTAAACTATCTACTATTTTTGACAGGTTTGAGAGTTTTCTTCTG
ATTGCAAAACCGTCAAAAGTGGGGACCAAGTCAACCCAATTTTTGGCTGCACATGGCTGATTATA
AACCACTTTTTGGTTTAATTATACAAGGCCCTTGAAGAGTTGAAGAAATTAGAGATTTACCTGAA
GATTTGTTGGAGACCGAGTCTTAGTCCTGAGTTGTTGTGGCATTCAAATTGACCAAAAATTAAGG
AAAAATCAGACACATTTCCTCAATTCATGGCCGACCACTCTTGGAGGAGGTTTCAAAGGATGGAC
ACTCTTAATTTTAGCAAACTAGCTCAATTGCCTCACCTATAAATAAGAGCTCATTTCTCACTTTT
TCAATCATCCCTCATCCCTCATCCCTCAACCCTCCCATCTCTCATCCTCTCTCTCAATTCTCTTA
GCTCTCACGCCTATCATCATCCTTGCATAAGGATTTTAGCAAATTAGCCTCTTAAAGAGCCCTTG
GTCGACCACTTTGGAGAACCATCAACAAATGAGCAACGCA
Done.