Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 84 of 203
Found at i:26479985 original size:120 final size:120
Alignment explanation
Indices: 26479769--26479990 Score: 338
Period size: 120 Copynumber: 1.9 Consensus size: 120
26479759 AATGTCTCTG
* * *
26479769 AATGCACATACGTGCCCCTGTTTTTACTTCGGTACCCCTGAATGCAAATGCGTGCCCCTGTTTGT
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGAATGCAAATACGTGCCCCTATTTGT
* *
26479834 ACTTCGGTATCCCTGAATGCACATGCATGCCCCTGTTTGTACTTTGATACCCCCA
66 ACTTCGGCATCCCTAAATGCACATGCATGCCCCTGTTTGTACTTTGATACCCCCA
* * * *
26479889 AATGCACATACGTGCCCTTGTTTGTACTTCGGTACCCCTGAATGCACATATGTTCCCCTATTTGT
1 AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGAATGCAAATACGTGCCCCTATTTGT
*
26479954 ACTTCGGCA-CCCTTAAATGCACATGCGTGCCCCTGTT
66 ACTTCGGCATCCC-TAAATGCACATGCATGCCCCTGTT
26479991 CTACATCTAT
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
119 3 0.03
120 88 0.97
ACGTcount: A:0.19, C:0.31, G:0.18, T:0.32
Consensus pattern (120 bp):
AATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGAATGCAAATACGTGCCCCTATTTGT
ACTTCGGCATCCCTAAATGCACATGCATGCCCCTGTTTGTACTTTGATACCCCCA
Found at i:26483923 original size:20 final size:20
Alignment explanation
Indices: 26483892--26483954 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
26483882 AATTGCCGGA
*
26483892 AATGTGGACAAGCCACCAAT
1 AATGTAGACAAGCCACCAAT
* ** *
26483912 ATTGTAGACAAGCTGCCAGT
1 AATGTAGACAAGCCACCAAT
* *
26483932 AATGTGGACAAGTCACCAAT
1 AATGTAGACAAGCCACCAAT
26483952 AAT
1 AAT
26483955 ACATATAAAC
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (20 bp):
AATGTAGACAAGCCACCAAT
Found at i:26485594 original size:16 final size:16
Alignment explanation
Indices: 26485539--26485587 Score: 98
Period size: 16 Copynumber: 3.1 Consensus size: 16
26485529 CGTTTGGTTC
26485539 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
26485555 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
26485571 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
26485587 G
1 G
26485588 GCGTAATAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.37, C:0.06, G:0.33, T:0.24
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:26489755 original size:58 final size:58
Alignment explanation
Indices: 26489684--26489802 Score: 159
Period size: 58 Copynumber: 2.1 Consensus size: 58
26489674 CTTATTAGGG
* * * *
26489684 AAAGAAAACCCAGAATCG-CCTTTCCTGGTGGCCTAGTTTAACTTCCTATAATTCCTAC
1 AAAGAAAAACCAGAAT-GACATTTCCTAGTGGCATAGTTTAACTTCCTATAATTCCTAC
* * *
26489742 AAAGAAAAACCAGAATGATATTTCCTAGTGGCATTGTTTAACTTCCTGTAATTCCTAC
1 AAAGAAAAACCAGAATGACATTTCCTAGTGGCATAGTTTAACTTCCTATAATTCCTAC
26489800 AAA
1 AAA
26489803 TCCTCCAACC
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
57 1 0.02
58 52 0.98
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (58 bp):
AAAGAAAAACCAGAATGACATTTCCTAGTGGCATAGTTTAACTTCCTATAATTCCTAC
Found at i:26500879 original size:26 final size:26
Alignment explanation
Indices: 26500850--26500905 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
26500840 TCGATATATA
26500850 GCTCTTTGTGAGCTTCCTGATTAAAG
1 GCTCTTTGTGAGCTTCCTGATTAAAG
* *
26500876 GCTCTTTGTGAGTTTCCTGATTAATG
1 GCTCTTTGTGAGCTTCCTGATTAAAG
26500902 GCTC
1 GCTC
26500906 ACCGAAGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.16, C:0.20, G:0.23, T:0.41
Consensus pattern (26 bp):
GCTCTTTGTGAGCTTCCTGATTAAAG
Found at i:26511597 original size:27 final size:26
Alignment explanation
Indices: 26511567--26511633 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
26511557 GTCAACTATC
* *
26511567 CTGTGTTTACTGTTCCGATGAACTACA
1 CTGTGTTTACTGTCCCGACGAACT-CA
* *
26511594 CTGTGTTTATTGTCCCGACGAACTCC
1 CTGTGTTTACTGTCCCGACGAACTCA
*
26511620 CTATGTTTACTGTC
1 CTGTGTTTACTGTC
26511634 TTAACGGGCT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 13 0.38
27 21 0.62
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (26 bp):
CTGTGTTTACTGTCCCGACGAACTCA
Found at i:26514819 original size:55 final size:55
Alignment explanation
Indices: 26514742--26514852 Score: 168
Period size: 55 Copynumber: 2.0 Consensus size: 55
26514732 TTGTCTTAAT
* * * *
26514742 TGTTGGAATACTGCTTCTTTTGAATATATTTTTTTTATGTTTAAATCGATTGTTA
1 TGTTGGAATACTGCTTCTTTTGAATAGATTATTTATATGTTTAAATCGACTGTTA
* *
26514797 TGTTGGAATATTGCTTCTTTTGAATCGATTATTTATATGTTTAAATCGACTGTTA
1 TGTTGGAATACTGCTTCTTTTGAATAGATTATTTATATGTTTAAATCGACTGTTA
26514852 T
1 T
26514853 ATAGCACTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.24, C:0.08, G:0.15, T:0.52
Consensus pattern (55 bp):
TGTTGGAATACTGCTTCTTTTGAATAGATTATTTATATGTTTAAATCGACTGTTA
Found at i:26516001 original size:34 final size:34
Alignment explanation
Indices: 26515958--26516026 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
26515948 AGCAGGAGGC
*
26515958 TGCTGAACTTGCATAAAAGTGGCTTTGGCGGCCT
1 TGCTGAACTTGCATAAAAGTGGCTTCGGCGGCCT
* * *
26515992 TGCTGAACTTGCATACAGGTGGCTTCGGCGTCCT
1 TGCTGAACTTGCATAAAAGTGGCTTCGGCGGCCT
26516026 T
1 T
26516027 CCTGTCCTGC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.17, C:0.23, G:0.29, T:0.30
Consensus pattern (34 bp):
TGCTGAACTTGCATAAAAGTGGCTTCGGCGGCCT
Found at i:26520238 original size:9 final size:9
Alignment explanation
Indices: 26520216--26520261 Score: 85
Period size: 9 Copynumber: 5.2 Consensus size: 9
26520206 TGGTTAAAAA
26520216 TTAACCGA-
1 TTAACCGAT
26520224 TTAACCGAT
1 TTAACCGAT
26520233 TTAACCGAT
1 TTAACCGAT
26520242 TTAACCGAT
1 TTAACCGAT
26520251 TTAACCGAT
1 TTAACCGAT
26520260 TT
1 TT
26520262 GCTATATAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 8 0.22
9 29 0.78
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (9 bp):
TTAACCGAT
Found at i:26521001 original size:44 final size:44
Alignment explanation
Indices: 26520933--26521095 Score: 227
Period size: 44 Copynumber: 3.5 Consensus size: 44
26520923 TCTTTAGTTT
* *
26520933 TAGACTTTAGTTTTATTGGATTGGTAATTGGTAATTGGGTTTGGG
1 TAGACTTTAG-TTTATTGGGTTGGTAAATGGTAATTGGGTTTGGG
*
26520978 TAGACTTTAGTTTATTGGGTTGGTAAATGGTAATTAGGTTTGGG
1 TAGACTTTAGTTTATTGGGTTGGTAAATGGTAATTGGGTTTGGG
26521022 TAGACTTTAGTTTATTGGGTTGGTACTTGGTAAATGGTAATTGGGTTTGGG
1 TAGACTTTAGTTTATT--G--GG---TTGGTAAATGGTAATTGGGTTTGGG
26521073 TAGACTTTAGTTTATTGGGTTGG
1 TAGACTTTAGTTTATTGGGTTGG
26521096 GTAATTGGGT
Statistics
Matches: 107, Mismatches: 4, Indels: 15
0.85 0.03 0.12
Matches are distributed among these distances:
44 51 0.48
45 10 0.09
46 1 0.01
47 2 0.02
48 2 0.02
49 1 0.01
51 40 0.37
ACGTcount: A:0.20, C:0.03, G:0.32, T:0.45
Consensus pattern (44 bp):
TAGACTTTAGTTTATTGGGTTGGTAAATGGTAATTGGGTTTGGG
Found at i:26521052 original size:51 final size:51
Alignment explanation
Indices: 26520997--26521095 Score: 189
Period size: 51 Copynumber: 1.9 Consensus size: 51
26520987 GTTTATTGGG
26520997 TTGGTAAATGGTAATTAGGTTTGGGTAGACTTTAGTTTATTGGGTTGGTAC
1 TTGGTAAATGGTAATTAGGTTTGGGTAGACTTTAGTTTATTGGGTTGGTAC
*
26521048 TTGGTAAATGGTAATTGGGTTTGGGTAGACTTTAGTTTATTGGGTTGG
1 TTGGTAAATGGTAATTAGGTTTGGGTAGACTTTAGTTTATTGGGTTGG
26521096 GTAATTGGGT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.20, C:0.03, G:0.33, T:0.43
Consensus pattern (51 bp):
TTGGTAAATGGTAATTAGGTTTGGGTAGACTTTAGTTTATTGGGTTGGTAC
Found at i:26523097 original size:42 final size:42
Alignment explanation
Indices: 26522984--26523147 Score: 159
Period size: 43 Copynumber: 3.8 Consensus size: 42
26522974 CAAAAAGCTC
* * * *
26522984 ATACAATGCCAATGTCTCAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCAA
* * * * *
26523026 ATAACGATGCCACTGTCTCGGACAAGGTCTTACACGTAATCAT
1 AT-ACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCAA
* *
26523069 ATACGATGCCAATGTCCCAAACATGGTCTTATACGTAAATGACAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGT-AAT--CAA
* * *
26523114 AT-CGATGCCAACGTCCCACACGTGGTCTTACACG
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACG
26523148 ATATCACATA
Statistics
Matches: 100, Mismatches: 18, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
42 30 0.30
43 38 0.38
44 28 0.28
45 4 0.04
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAATCAA
Found at i:26524236 original size:13 final size:13
Alignment explanation
Indices: 26524218--26524242 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26524208 ACAAACGATA
26524218 AAATTTTCACACG
1 AAATTTTCACACG
26524231 AAATTTTCACAC
1 AAATTTTCACAC
26524243 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:26531893 original size:48 final size:48
Alignment explanation
Indices: 26531828--26531926 Score: 144
Period size: 48 Copynumber: 2.1 Consensus size: 48
26531818 TAAAAATTCT
*
26531828 AAAAAAATCACTCTAATGGAGGGTACGAGAAAATTACTAAAAAACAAC
1 AAAAAAATCACTCTAATGGAGGGTACGAGAAAAGTACTAAAAAACAAC
* * * * *
26531876 AAAAAAATCATTTTAATGGAGGGTATGAGAAAAGTACTTAAACACAAC
1 AAAAAAATCACTCTAATGGAGGGTACGAGAAAAGTACTAAAAAACAAC
26531924 AAA
1 AAA
26531927 TAATTCAGGG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.54, C:0.12, G:0.15, T:0.19
Consensus pattern (48 bp):
AAAAAAATCACTCTAATGGAGGGTACGAGAAAAGTACTAAAAAACAAC
Found at i:26540057 original size:7 final size:7
Alignment explanation
Indices: 26540026--26540059 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
26540016 AATATAAAAA
26540026 TTAAATT
1 TTAAATT
*
26540033 TTAGATT
1 TTAAATT
*
26540040 TTAGATT
1 TTAAATT
26540047 TTAAATT
1 TTAAATT
26540054 TTAAAT
1 TTAAAT
26540060 ATATACATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (7 bp):
TTAAATT
Found at i:26544102 original size:92 final size:91
Alignment explanation
Indices: 26543907--26544163 Score: 412
Period size: 92 Copynumber: 2.8 Consensus size: 91
26543897 CAATTGGGAA
* * * *
26543907 ATAAAAACAATTGAATGAAACAGTAGATTGAATCAAATATATGCTTCAATTATTAAAGAG---AA
1 ATAAAAACAATTGAATGAAATAGTAGATTAAATAAAATATATGCTTCAATCATTAAAGAGATAAA
26543969 AGTTTTCATCTTATAATCCCAACCCT
66 AGTTTTCATCTTATAATCCCAACCCT
26543995 ATAAAAACAATTGAATGAAATAGTAGATTAAATAAAATATATGCTTCAATCATTAAAGAGAATAA
1 ATAAAAACAATTGAATGAAATAGTAGATTAAATAAAATATATGCTTCAATCATTAAAGAG-ATAA
*
26544060 AATTTTTCATCTTATAATCCCAACCCT
65 AAGTTTTCATCTTATAATCCCAACCCT
* *
26544087 ATAAAAATAATTGAATGAAATAGTAGATTAAATTAAATATATGCTTCAATCATTAAAGAGATTAA
1 ATAAAAACAATTGAATGAAATAGTAGATTAAATAAAATATATGCTTCAATCATTAAAGAGA-TAA
26544152 AAGTTTTCATCT
65 AAGTTTTCATCT
26544164 ATGGTGGTTG
Statistics
Matches: 156, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
88 56 0.36
91 1 0.01
92 99 0.63
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.32
Consensus pattern (91 bp):
ATAAAAACAATTGAATGAAATAGTAGATTAAATAAAATATATGCTTCAATCATTAAAGAGATAAA
AGTTTTCATCTTATAATCCCAACCCT
Found at i:26550142 original size:14 final size:14
Alignment explanation
Indices: 26550123--26550149 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26550113 AAGTACTAAA
26550123 AATTAAAGTAAAGC
1 AATTAAAGTAAAGC
26550137 AATTAAAGTAAAG
1 AATTAAAGTAAAG
26550150 AAAGATAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.04, G:0.15, T:0.22
Consensus pattern (14 bp):
AATTAAAGTAAAGC
Found at i:26555100 original size:60 final size:60
Alignment explanation
Indices: 26555005--26555122 Score: 157
Period size: 60 Copynumber: 2.0 Consensus size: 60
26554995 CGGTCATCTA
* * *
26555005 TCACCCTATGAACATGAGGATTAGCACCCTAACCATT-GAAATTATCATTGATACCAGGTT
1 TCACCCTATGAACAAGAGGATTACCACCCTAACCATTCG-AATTATCATTGAGACCAGGTT
* * * *
26555065 TCACCCTATGAACAAGAGGATTACCATCTTGACCATTCGGATTATCATTGAGACCAGG
1 TCACCCTATGAACAAGAGGATTACCACCCTAACCATTCGAATTATCATTGAGACCAGG
26555123 ATTATTCCCG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 49 0.98
61 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (60 bp):
TCACCCTATGAACAAGAGGATTACCACCCTAACCATTCGAATTATCATTGAGACCAGGTT
Found at i:26568970 original size:20 final size:19
Alignment explanation
Indices: 26568917--26569011 Score: 66
Period size: 20 Copynumber: 4.7 Consensus size: 19
26568907 TGTAAAACAA
*
26568917 GGGCACCAAAGTGAAATCAG
1 GGGCACC-AAGTGCAATCAG
*
26568937 GAGCA-CAAGTGTGCAATCAG
1 GGGCACCAA--GTGCAATCAG
* *
26568957 GGGCACCGAAGTGCAGTTAG
1 GGGCACC-AAGTGCAATCAG
* * *
26568977 GGGCACAAATATGCTATCAG
1 GGGCACCAA-GTGCAATCAG
26568997 GGGCACCAGAGTGCA
1 GGGCACCA-AGTGCA
26569012 TTTAGGGACA
Statistics
Matches: 56, Mismatches: 13, Indels: 12
0.69 0.16 0.15
Matches are distributed among these distances:
18 2 0.04
19 3 0.05
20 47 0.84
21 2 0.04
22 2 0.04
ACGTcount: A:0.33, C:0.21, G:0.33, T:0.14
Consensus pattern (19 bp):
GGGCACCAAGTGCAATCAG
Found at i:26568983 original size:40 final size:39
Alignment explanation
Indices: 26568939--26569042 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 39
26568929 GAAATCAGGA
26568939 GCACAAGTGTGCAATCAGGGGCACC-GAAGTGCAGTTAGGG
1 GCACAA-TGTGCAATCAGGGGCACCAG-AGTGCAGTTAGGG
* * *
26568979 GCACAAATATGCTATCAGGGGCACCAGAGTGCATTTAGGG
1 GCAC-AATGTGCAATCAGGGGCACCAGAGTGCAGTTAGGG
* * *
26569019 ACACGAATGTGTAAACAGGGGCAC
1 GCAC-AATGTGCAATCAGGGGCAC
26569043 AGTTGTGAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
40 50 0.94
41 3 0.06
ACGTcount: A:0.31, C:0.20, G:0.33, T:0.16
Consensus pattern (39 bp):
GCACAATGTGCAATCAGGGGCACCAGAGTGCAGTTAGGG
Found at i:26570840 original size:16 final size:16
Alignment explanation
Indices: 26570819--26570883 Score: 103
Period size: 16 Copynumber: 4.1 Consensus size: 16
26570809 TTCACTGTAT
* *
26570819 TGGAATAAAAGCGTAA
1 TGGAATAGAGGCGTAA
*
26570835 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
26570851 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
26570867 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
26570883 T
1 T
26570884 AGCAATTCAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 45 1.00
ACGTcount: A:0.40, C:0.05, G:0.34, T:0.22
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:26571143 original size:18 final size:18
Alignment explanation
Indices: 26571102--26571150 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
26571092 ATATTTTAAC
26571102 ATAATTATAATT-AAATAT
1 ATAATT-TAATTAAAATAT
26571120 AT--TTTAATTAAAATAT
1 ATAATTTAATTAAAATAT
26571136 ATAATTTAA-TAAAAT
1 ATAATTTAATTAAAAT
26571151 TCTTAATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.18
16 10 0.36
17 6 0.21
18 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATTTAATTAAAATAT
Found at i:26571309 original size:120 final size:120
Alignment explanation
Indices: 26571096--26571468 Score: 639
Period size: 120 Copynumber: 3.1 Consensus size: 120
26571086 TTAATCATAT
* * *
26571096 TTTAACATAATTATAATTAAATATATTTTAATT-AAAATATATAATTTAATAAAATTCTTAATAT
1 TTTAAAATAATTATTATTAAATATAATTT-ATTAAAAATATATAATTTAATAAAATTCTTAATAT
*
26571160 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTACAAAATATAA
26571216 TTTAAAATAATTATTATTAAATATAATTTATTAAAAATATATAATTTAATAAAATTCTTAATATT
1 TTTAAAATAATTATTATTAAATATAATTTATTAAAAATATATAATTTAATAAAATTCTTAATATT
26571281 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTACAAAATATAA
66 AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTACAAAATATAA
*
26571336 TTT--AA-AATTATTATTAAATATAA-TTAGATAAAAATATATAATTTAATAAAATTCTTAATAT
1 TTTAAAATAATTATTATTAAATATAATTTA-TTAAAAATATATAATTTAATAAAATTCTTAATAT
26571397 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTACAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTACAAAATATAA
*
26571453 TTTAAAATTATTATTA
1 TTTAAAATAATTATTA
26571469 AAGGTTATGA
Statistics
Matches: 242, Mismatches: 6, Indels: 10
0.94 0.02 0.04
Matches are distributed among these distances:
116 3 0.01
117 110 0.45
118 2 0.01
119 5 0.02
120 122 0.50
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (120 bp):
TTTAAAATAATTATTATTAAATATAATTTATTAAAAATATATAATTTAATAAAATTCTTAATATT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTACAAAATATAA
Found at i:26571430 original size:117 final size:116
Alignment explanation
Indices: 26571104--26571470 Score: 635
Period size: 117 Copynumber: 3.1 Consensus size: 116
26571094 ATTTTAACAT
* * *
26571104 AATTATAATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATATTAAATATTC
1 AATTATTATTAAATATA-ATTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTC
*
26571169 TTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAA
65 TTATATGAATTTACTAAAATCATAATATATAATACTACAAAATATAATTT--AA
*
26571223 TAATTATTATTAAATATAATTTATTAAAAATATATAATTTAATAAAATTCTTAATATTAAATATT
1 -AATTATTATTAAATATAA-TTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATT
26571288 CTTATATGAATTTACTAAAATCATAATATATAATACTACAAAATATAATTTAA
64 CTTATATGAATTTACTAAAATCATAATATATAATACTACAAAATATAATTTAA
26571341 AATTATTATTAAATATAATTAGATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTC
1 AATTATTATTAAATATAATTA-ATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTC
26571406 TTATATGAATTTACTAAAATCATAATATATAATACTACAAAATATAATTTAA
65 TTATATGAATTTACTAAAATCATAATATATAATACTACAAAATATAATTTAA
26571458 AATTATTATTAAA
1 AATTATTATTAAA
26571471 GGTTATGATA
Statistics
Matches: 239, Mismatches: 6, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
116 3 0.01
117 125 0.52
118 2 0.01
120 109 0.46
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.43
Consensus pattern (116 bp):
AATTATTATTAAATATAATTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCT
TATATGAATTTACTAAAATCATAATATATAATACTACAAAATATAATTTAA
Found at i:26583918 original size:27 final size:27
Alignment explanation
Indices: 26583873--26583981 Score: 150
Period size: 27 Copynumber: 4.0 Consensus size: 27
26583863 TCGTTAACTG
*
26583873 TACCGAAATATCCTCGATGGGTAAAAT
1 TACCGAAATACCCTCGATGGGTAAAAT
* *
26583900 TATC-AGAATACCCTTGATGGGTAAAAT
1 TACCGA-AATACCCTCGATGGGTAAAAT
*
26583927 TACCGAAATACCCTCGACGGGTAAAAT
1 TACCGAAATACCCTCGATGGGTAAAAT
26583954 TACCGAAATACGCC-CGATGGGTAAAAT
1 TACCGAAATAC-CCTCGATGGGTAAAAT
26583981 T
1 T
26583982 GACTATTGTG
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
26 1 0.01
27 68 0.94
28 3 0.04
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCTCGATGGGTAAAAT
Found at i:26589607 original size:44 final size:44
Alignment explanation
Indices: 26589544--26589631 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
26589534 ACAAAGTCAG
*
26589544 CAGGATAAATAAATGTACATGTACTAATACATCCTCAATTTTTT
1 CAGGAAAAATAAATGTACATGTACTAATACATCCTCAATTTTTT
26589588 CAGGAAAAATAAATGTACATGTACTAATACATCCTCAATTTTTT
1 CAGGAAAAATAAATGTACATGTACTAATACATCCTCAATTTTTT
26589632 TCCTTCTGGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (44 bp):
CAGGAAAAATAAATGTACATGTACTAATACATCCTCAATTTTTT
Found at i:26595829 original size:21 final size:21
Alignment explanation
Indices: 26595771--26595829 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
26595761 CAGGGCTAAT
*
26595771 TTAAAAATGATTTAAAGATCCA
1 TTAAAAAT-ATTTAAAAATCCA
**
26595793 TTAAAAATATGGAAAAATACC-
1 TTAAAAATATTTAAAAAT-CCA
*
26595814 TTTAAAATATTTAAAA
1 TTAAAAATATTTAAAA
26595830 TTCCCCTAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
21 20 0.67
22 10 0.33
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (21 bp):
TTAAAAATATTTAAAAATCCA
Found at i:26599458 original size:42 final size:42
Alignment explanation
Indices: 26599353--26599472 Score: 134
Period size: 42 Copynumber: 2.9 Consensus size: 42
26599343 CACATAAGTG
* * * * * *
26599353 CTAAACAGAAACCCATAAAGGTTGAACGGAAGCTCAACAGAG
1 CTAAACGGAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAA
* *
26599395 CTGAACGGAAACCCATAAGGGTTAAATTGAAGCTCAAAAGAA
1 CTAAACGGAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAA
* *
26599437 CTAAACTGAAACCCA-ATAGGGTTAAACTGAAACTCA
1 CTAAACGGAAACCCATA-AGGGTTAAACTGAAGCTCA
26599473 TATGAGTTAA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 1 0.02
42 64 0.98
ACGTcount: A:0.45, C:0.20, G:0.19, T:0.16
Consensus pattern (42 bp):
CTAAACGGAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAA
Found at i:26599481 original size:21 final size:22
Alignment explanation
Indices: 26599438--26599493 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
26599428 TCAAAAGAAC
* *
26599438 TAAACTGAAACCCA-ATAGGGT
1 TAAACTGAAACTCATATAGAGT
26599459 TAAACTGAAACTCATAT-GAGT
1 TAAACTGAAACTCATATAGAGT
*
26599480 T-AACTGAAGCTCAT
1 TAAACTGAAACTCAT
26599494 GAGAGCTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 12 0.39
21 17 0.55
22 2 0.06
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (22 bp):
TAAACTGAAACTCATATAGAGT
Found at i:26601854 original size:34 final size:35
Alignment explanation
Indices: 26601816--26601892 Score: 113
Period size: 34 Copynumber: 2.2 Consensus size: 35
26601806 TAATAGAGTT
*
26601816 TTGTGCCCTGCACTAATCGAATAA-C-AAACAATAG
1 TTGTGCCCTGCACTAATCGAATAATCGAAA-AATAA
*
26601850 TTGTGCCCTGCACTAGTCGAATAATCGAAAAATAA
1 TTGTGCCCTGCACTAATCGAATAATCGAAAAATAA
26601885 TTGTGCCC
1 TTGTGCCC
26601893 AACTCTAGTC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
34 23 0.59
35 13 0.33
36 3 0.08
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (35 bp):
TTGTGCCCTGCACTAATCGAATAATCGAAAAATAA
Found at i:26601901 original size:35 final size:33
Alignment explanation
Indices: 26601816--26601917 Score: 96
Period size: 34 Copynumber: 3.0 Consensus size: 33
26601806 TAATAGAGTT
** * *
26601816 TTGTGCCCTGCACTAATCGAATAACAAACAATAG
1 TTGTGCCCAACACTAGTCGAATAACAAA-AATAA
**
26601850 TTGTGCCCTGCACTAGTCGAATAATCGAAAAATAA
1 TTGTGCCCAACACTAGTCGAATAA-C-AAAAATAA
* *
26601885 TTGTGCCCAACTCTAGTCGGATAACCAAAAATA
1 TTGTGCCCAACACTAGTCGAATAA-CAAAAATA
26601918 TCAATTACAC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
34 30 0.51
35 26 0.44
36 3 0.05
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.25
Consensus pattern (33 bp):
TTGTGCCCAACACTAGTCGAATAACAAAAATAA
Found at i:26639473 original size:47 final size:47
Alignment explanation
Indices: 26639389--26639607 Score: 303
Period size: 47 Copynumber: 4.6 Consensus size: 47
26639379 TATTTGAATA
26639389 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26639438 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26639485 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * * *
26639532 AATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26639581 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
26639608 TCCCGAAGGG
Statistics
Matches: 154, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
47 103 0.67
49 51 0.33
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:26639579 original size:96 final size:94
Alignment explanation
Indices: 26639389--26639607 Score: 303
Period size: 96 Copynumber: 2.3 Consensus size: 94
26639379 TATTTGAATA
26639389 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * * *
26639454 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGACAAGGCCGAATGGCCAACGTGATG
* * *
26639485 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* *
26639550 TATGTGACAGGGCCGAGTGGCCAACGTGATG
64 TATGTGACAAGGCCGAATGGCCAACGTGATG
* *
26639581 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
26639608 TCCCGAAGGG
Statistics
Matches: 110, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
94 44 0.40
96 66 0.60
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGACAAGGCCGAATGGCCAACGTGATG
Found at i:26639782 original size:37 final size:37
Alignment explanation
Indices: 26639726--26639804 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
26639716 CCGAGCTCTA
* * * *
26639726 AAGACCCGGTGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
26639763 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26639800 AAGAC
1 AAGAC
26639805 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26644911 original size:45 final size:45
Alignment explanation
Indices: 26644862--26644950 Score: 108
Period size: 45 Copynumber: 2.0 Consensus size: 45
26644852 GCCATTGGGT
* *
26644862 TGTGGATATACAACGAAAAT-TCACAGATGAAACTTGCCACTAGGC
1 TGTGGATACACAAC-AAAATGTCACAGATAAAACTTGCCACTAGGC
* * * *
26644907 TGTGGGTGCACAGCAAAATGTCACAGATAAAATTTGCCACTAGG
1 TGTGGATACACAACAAAATGTCACAGATAAAACTTGCCACTAGG
26644951 TTGTAAATGC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
44 5 0.14
45 32 0.86
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.22
Consensus pattern (45 bp):
TGTGGATACACAACAAAATGTCACAGATAAAACTTGCCACTAGGC
Found at i:26644962 original size:45 final size:44
Alignment explanation
Indices: 26644877--26644963 Score: 111
Period size: 45 Copynumber: 2.0 Consensus size: 44
26644867 ATATACAACG
* ***
26644877 AAAATTCACAGATGAAACTTGCCACTAGGCTGTGGGTGCACAGC
1 AAAATTCACAGATAAAACTTGCCACTAGGCTGTAAATGCACAGC
* *
26644921 AAAATGTCACAGATAAAATTTGCCACTAGGTTGTAAATGCACA
1 AAAAT-TCACAGATAAAACTTGCCACTAGGCTGTAAATGCACA
26644964 ACATATTTGC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 5 0.14
45 31 0.86
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (44 bp):
AAAATTCACAGATAAAACTTGCCACTAGGCTGTAAATGCACAGC
Found at i:26646859 original size:14 final size:14
Alignment explanation
Indices: 26646840--26646872 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
26646830 AAATATATAT
26646840 AAATTATAAAAATA
1 AAATTATAAAAATA
26646854 AAATTATAAAAATA
1 AAATTATAAAAATA
26646868 AAATT
1 AAATT
26646873 TACAATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AAATTATAAAAATA
Found at i:26646979 original size:22 final size:21
Alignment explanation
Indices: 26646933--26646988 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
26646923 TTACAGATAA
*
26646933 TGTAAAAA-A-TTGTAAAATT
1 TGTAAAAATATTTTTAAAATT
*
26646952 TGTAAAACTTATTTTTAAAATGT
1 TGTAAAA-ATATTTTTAAAAT-T
26646975 T-TAAAAATATTTTT
1 TGTAAAAATATTTTT
26646989 TTATAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 7 0.23
21 8 0.27
22 13 0.43
23 2 0.07
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.46
Consensus pattern (21 bp):
TGTAAAAATATTTTTAAAATT
Found at i:26647392 original size:13 final size:12
Alignment explanation
Indices: 26647362--26647426 Score: 58
Period size: 13 Copynumber: 4.9 Consensus size: 12
26647352 TATTTAAATA
26647362 TTTAATATTATAATT
1 TTTAAT-TT-TAA-T
*
26647377 TTTTATTTTACAT
1 TTTAATTTTA-AT
26647390 TTTAAATTTTAAT
1 TTT-AATTTTAAT
*
26647403 TTTAATTTAATAT
1 TTTAATTTTA-AT
26647416 TTTAATTTTAA
1 TTTAATTTTAA
26647427 ATAAATCTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
12 7 0.16
13 22 0.51
14 9 0.21
15 5 0.12
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTAATTTTAAT
Found at i:26647403 original size:6 final size:6
Alignment explanation
Indices: 26647362--26647426 Score: 58
Period size: 6 Copynumber: 9.8 Consensus size: 6
26647352 TATTTAAATA
* *
26647362 TTTAAT ATTATAATT TTTTAT TTTACAT TTTAAAT TTTAAT TTTAAT TTAATAT
1 TTTAAT -TT-TAA-T TTTAAT TTTA-AT TTT-AAT TTTAAT TTTAAT TTTA-AT
26647416 TTTAAT TTTAA
1 TTTAAT TTTAA
26647427 ATAAATCTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
6 23 0.47
7 19 0.39
8 6 0.12
9 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (6 bp):
TTTAAT
Found at i:26647410 original size:19 final size:19
Alignment explanation
Indices: 26647362--26647426 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
26647352 TATTTAAATA
* *
26647362 TTTAATATTATAATTTTTTAT
1 TTTAAT-TT-TAAATTTTAAT
26647383 TTTACATTTTAAATTTTAAT
1 TTTA-ATTTTAAATTTTAAT
26647403 TTTAA-TTTAATATTTTAAT
1 TTTAATTTTAA-ATTTTAAT
26647422 TTTAA
1 TTTAA
26647427 ATAAATCTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
18 5 0.12
19 14 0.35
20 13 0.32
21 6 0.15
22 2 0.05
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTAATTTTAAATTTTAAT
Found at i:26648319 original size:24 final size:25
Alignment explanation
Indices: 26648274--26648320 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
26648264 ATACAAATTA
*
26648274 TTTAAAAAAGAAAGATAAATTTTTT
1 TTTAAAAAAGAAACATAAATTTTTT
* *
26648299 TTTAAAAAA-ATACATAGATTTT
1 TTTAAAAAAGAAACATAAATTTT
26648321 GAATCAAGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.40
Consensus pattern (25 bp):
TTTAAAAAAGAAACATAAATTTTTT
Found at i:26656103 original size:27 final size:27
Alignment explanation
Indices: 26656050--26656104 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
26656040 TTAAAAAATT
* *
26656050 TAATTAATTAATGACAAATAAATTAAA
1 TAATTAATTAAAGACAAATAAAATAAA
*
26656077 TAATTAGTTAAAGA-AAATAAAAATAAA
1 TAATTAATTAAAGACAAAT-AAAATAAA
26656104 T
1 T
26656105 GTGTGATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (27 bp):
TAATTAATTAAAGACAAATAAAATAAA
Found at i:26658890 original size:69 final size:69
Alignment explanation
Indices: 26658813--26658949 Score: 265
Period size: 69 Copynumber: 2.0 Consensus size: 69
26658803 AACCCTATAT
26658813 GACTTTCCTGCGAACTCGTGTGCCAATATAATGCGGAACCTATACATGTGAACCCCCTTTATATG
1 GACTTTCCTGCGAACTCGTGTGCCAATATAATGCGGAACCTATACATGTGAACCCCCTTTATATG
26658878 CGAA
66 CGAA
*
26658882 GACTTTCCTGCGAACTCGTGTGCCAATATAATGCGGAACCTATACATGTGACCCCCCTTTATATG
1 GACTTTCCTGCGAACTCGTGTGCCAATATAATGCGGAACCTATACATGTGAACCCCCTTTATATG
26658947 CGA
66 CGA
26658950 CCCCCCTTGT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (69 bp):
GACTTTCCTGCGAACTCGTGTGCCAATATAATGCGGAACCTATACATGTGAACCCCCTTTATATG
CGAA
Found at i:26662021 original size:3 final size:3
Alignment explanation
Indices: 26662009--26662055 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
26661999 TGTGCTTTTA
*
26662009 TAT T-T TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26662056 GCATATTAGT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:26664475 original size:28 final size:29
Alignment explanation
Indices: 26664443--26664505 Score: 83
Period size: 30 Copynumber: 2.2 Consensus size: 29
26664433 AATAAAAATT
* *
26664443 ATTTTATGAGAC-TAGGGGCAAAATCATA
1 ATTTTATGAAACTTAGGGGCAAAAACATA
*
26664471 ATTTTGTGAAACTTTAGGGGCAAAAACATA
1 ATTTTATGAAAC-TTAGGGGCAAAAACATA
26664501 ATTTT
1 ATTTT
26664506 GCCAAAGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 10 0.33
30 20 0.67
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (29 bp):
ATTTTATGAAACTTAGGGGCAAAAACATA
Found at i:26664878 original size:26 final size:26
Alignment explanation
Indices: 26664849--26664929 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
26664839 TTTAATCACG
26664849 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
26664875 TGTGTA-T-CGAATG-GTAATGG-TCAC-A
1 TGTGTAGTAC-TATGTG-CA-GGCT-ACTA
26664900 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
26664926 TGTG
1 TGTG
26664930 AATCGAACAT
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 2 0.05
25 17 0.40
26 21 0.50
27 2 0.05
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:26664887 original size:100 final size:102
Alignment explanation
Indices: 26664744--26664927 Score: 293
Period size: 102 Copynumber: 1.8 Consensus size: 102
26664734 AAAGTGATGG
*
26664744 TCACGTGTGTAGTACTATGGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGTA
1 TCACGTGTGTAGTACTATGGCAGGCTACTACGTGTACCGGAATGATAATGGTCACATGTGTAGTA
*
26664807 CTATTTGCAGGCTACTATGCGTACCGGATAGTTTTAA
66 CTATGTGCAGGCTACTATGCGTACCGGATAGTTTTAA
* * *
26664844 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATC-GAATGGTAATGGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATG-GCAGGCTACTACGTGTACCGGAATGATAATGGTCACATGTGTAGT
26664908 ACTATGTGCAGGCTACTATG
65 ACTATGTGCAGGCTACTATG
26664928 TGAATCGAAC
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
100 25 0.33
101 18 0.24
102 33 0.43
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGGCAGGCTACTACGTGTACCGGAATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGTTTTAA
Found at i:26664936 original size:51 final size:50
Alignment explanation
Indices: 26664740--26664929 Score: 222
Period size: 51 Copynumber: 3.8 Consensus size: 50
26664730 AGTGAAAGTG
* * *
26664740 ATGGTCACGTGTGTAGTACTATG-GCAGGCTACTACGTGTACCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACC-GAATGGT
* * * * *
26664790 A-GGTCGCATGTGTAGTACTATTTGCAGGCTACTATGCGTACCGGATAGTT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAAT-GGT
* ** * *
26664840 TTAATCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATCGAATGGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGGT
26664890 AATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
26664930 AATCGAACAT
Statistics
Matches: 115, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
49 21 0.18
50 22 0.19
51 72 0.63
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGGT
Found at i:26664987 original size:45 final size:45
Alignment explanation
Indices: 26664936--26665023 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
26664926 TGTGAATCGA
* *
26664936 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCAG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCAG
26664981 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
26665024 GAGTATCTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCAG
Found at i:26686327 original size:29 final size:29
Alignment explanation
Indices: 26686294--26686352 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
26686284 AGGAAAGTGA
26686294 ATGCCAAACTAGGAAGGACCTTATGTGGT
1 ATGCCAAACTAGGAAGGACCTTATGTGGT
26686323 ATGCCAAACTAGGAAGGACCTTATGTGGT
1 ATGCCAAACTAGGAAGGACCTTATGTGGT
26686352 A
1 A
26686353 AAGAAGGCCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (29 bp):
ATGCCAAACTAGGAAGGACCTTATGTGGT
Found at i:26687391 original size:44 final size:43
Alignment explanation
Indices: 26687341--26687708 Score: 179
Period size: 44 Copynumber: 8.0 Consensus size: 43
26687331 TCATTGTGAA
* * *
26687341 AAATCTTATCTCACTGAATTTGCAATGGAGCAGATTAAAGCTAC
1 AAATCTTATCTC-CTGAAGTTACAATGGAACAGATTAAAGCTAC
* * ** *
26687385 AAATCTTATCTCCCTAAAGTTACAGTGGAGTAGATTGAAA-CGAC
1 AAATCTTATCT-CCTGAAGTTACAATGGAACAGATT-AAAGCTAC
* * * * * *
26687429 AAATCTTATCTCCTTGGAGTTGCAGTGAAACAGATTGAAGCTGC
1 AAATCTTATCTCC-TGAAGTTACAATGGAACAGATTAAAGCTAC
*
26687473 AAATCTTATTTTCCTGAAGTTACAATGGAACAGATTAAAGCTACAAGTTAC
1 AAATCTTA-TCTCCTGAAGTTACAATGGAACAGATTAAAG---C----TAC
* * * *
26687524 AAATCTTATCTCCCTAAAGTTGCAGTGGAATAGATTGAAA-CTAC
1 AAATCTTATCT-CCTGAAGTTACAATGGAACAGATT-AAAGCTAC
* * ** * *
26687568 AAATCTTATTTCCCTGAGGTTGTAGTGGAATAGATTAAAGCTACAAGTTAC
1 AAATCTTATCT-CCTGAAGTTACAATGGAACAGATTAAAG---C----TAC
* *
26687619 AAATCTTATCTCCCTGAAGTTGC-A-GAGAAGCAGATTGAAA-CTAT
1 AAATCTTATCT-CCTGAAGTTACAATG-GAA-CAGATT-AAAGCTAC
* * * *
26687663 AAATCTTATTTCCTTGAGGTTGCAGTGGAACAGATTAAAGCTAC
1 AAATCTTATCTCC-TGAAGTTACAATGGAACAGATTAAAGCTAC
26687707 AA
1 AA
26687709 GTTACAAATT
Statistics
Matches: 254, Mismatches: 41, Indels: 58
0.72 0.12 0.16
Matches are distributed among these distances:
43 12 0.05
44 156 0.61
45 11 0.04
46 1 0.00
47 2 0.01
48 2 0.01
49 1 0.00
50 5 0.02
51 58 0.23
52 6 0.02
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (43 bp):
AAATCTTATCTCCTGAAGTTACAATGGAACAGATTAAAGCTAC
Found at i:26687553 original size:51 final size:51
Alignment explanation
Indices: 26687472--26687786 Score: 262
Period size: 44 Copynumber: 6.6 Consensus size: 51
26687462 ATTGAAGCTG
* * * *
26687472 CAAATCTTATTTTCCTGAAGTTACAATGGAACAGATTAAAGCTACAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
* * *
26687523 CAAATCTTATCTCCCTAAAGTTGCAGTGGAATAGATT---G--A-AA-CTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
* * * *
26687567 CAAATCTTATTTCCCTGAGGTTGTAGTGGAATAGATTAAAGCTACAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
*
26687618 CAAATCTTATCTCCCTGAAGTTGCAG-AGAAGCAGATTGAAA-CT---A--T-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAA-CAGATT-AAAGCTACAAGTTA
* * *
26687663 -AAATCTTATTTCCTTGAGGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
* * * * *
26687713 CAAATTTTATCTCCTTGAAGATGTAGTGGAGCAGA-T-----TA-AAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
*
26687757 CAAATCTCATCTCCCTGAAGTTGCAGTGGA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGA
26687787 CCAAATTGAC
Statistics
Matches: 214, Mismatches: 32, Indels: 43
0.74 0.11 0.15
Matches are distributed among these distances:
43 3 0.01
44 96 0.45
45 7 0.03
46 2 0.01
47 2 0.01
48 2 0.01
49 2 0.01
50 6 0.03
51 91 0.43
52 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.31
Consensus pattern (51 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTACAAGTTA
Found at i:26687667 original size:139 final size:132
Alignment explanation
Indices: 26687341--26687781 Score: 341
Period size: 139 Copynumber: 3.2 Consensus size: 132
26687331 TCATTGTGAA
* * * *
26687341 AAATCTTATCTCACTGAATTTGCAATGGAGCAGATTAAAGCTACAAATCTTATCTCCCTAAAGTT
1 AAATCTTATCTCCCTGAAGTTGCAATGAAGCAGATTAAAGCTATAAATCTTATCTCCCTAAAGTT
* * * * *
26687406 ACAGTGGAGTAGATTGAAACGACAAATCTTATCTCCTTGGAGTTGCAGTGAAACAGATTGAAGCT
66 GCAGTGGAATAGATTGAAACTACAAATCTTATCTCCCTGGAGTTGCAGTGAAACAGATTAAAGCT
26687471 GC
131 GC
* * *
26687473 AAATCTTATTTTCCTGAAGTTACAATGGAA-CAGATTAAAGCTACAAGTTACAAATCTTATCTCC
1 AAATCTTATCTCCCTGAAGTTGCAAT-GAAGCAGATTAAAGCT---A--T--AAATCTTATCTCC
* * * *
26687537 CTAAAGTTGCAGTGGAATAGATTGAAACTACAAATCTTATTTCCCT-GAGGTTGTAGTGGAATAG
58 CTAAAGTTGCAGTGGAATAGATTGAAACTACAAATCTTATCTCCCTGGA-GTTGCAGTGAAACAG
26687601 ATTAAAGCTACAAGTTAC
122 ATTAAAGCT----G---C
* * * *
26687619 AAATCTTATCTCCCTGAAGTTGCAGA-GAAGCAGATTGAAA-CTATAAATCTTATTTCCTTGAGG
1 AAATCTTATCTCCCTGAAGTTGCA-ATGAAGCAGATT-AAAGCTATAAATCTTATCTCCCTAAAG
* * * * * * * * *
26687682 TTGCAGTGGAACAGATTAAAGCTACAAGTTACAAATTTTATCTCCTTGAAGATGTAGTGGAGCAG
64 TTGCAGTGGAATAGATT---G--A-AA-CTACAAATCTTATCTCCCTGGAGTTGCAGTGAAACAG
* *
26687747 ATTAAAGTTAC
122 ATTAAAGCTGC
*
26687758 AAATCTCATCTCCCTGAAGTTGCA
1 AAATCTTATCTCCCTGAAGTTGCA
26687782 GTGGACCAAA
Statistics
Matches: 247, Mismatches: 35, Indels: 47
0.75 0.11 0.14
Matches are distributed among these distances:
132 33 0.13
133 2 0.01
135 1 0.00
138 2 0.01
139 129 0.52
141 1 0.00
142 1 0.00
143 2 0.01
144 1 0.00
145 5 0.02
146 65 0.26
147 5 0.02
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (132 bp):
AAATCTTATCTCCCTGAAGTTGCAATGAAGCAGATTAAAGCTATAAATCTTATCTCCCTAAAGTT
GCAGTGGAATAGATTGAAACTACAAATCTTATCTCCCTGGAGTTGCAGTGAAACAGATTAAAGCT
GC
Found at i:26687802 original size:95 final size:95
Alignment explanation
Indices: 26687341--26687786 Score: 487
Period size: 95 Copynumber: 4.8 Consensus size: 95
26687331 TCATTGTGAA
* * * * *
26687341 AAATCTTATCTCACTGAATTTGCAATGGAGCAGATTAAAGCTACAAATCTTATCTCCCTAAAGTT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATTTCCCTGAAGTT
* ** *
26687406 ACAGTGGAGTAGATTGAA---AC--G--AC
66 GCAGTGGAACAGATTAAAGCTACAAGTTAC
* * * * * * *
26687429 AAATCTTATCTCCTTGGAGTTGCAGTGAAACAGATTGAAGCTGCAAATCTTATTTTCCTGAAGTT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATTTCCCTGAAGTT
* *
26687494 ACAATGGAACAGATTAAAGCTACAAGTTAC
66 GCAGTGGAACAGATTAAAGCTACAAGTTAC
* ** *
26687524 AAATCTTATCTCCCTAAAGTTGCAGTGGAATAGATTGAAA-CTACAAATCTTATTTCCCTGAGGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCTACAAATCTTATTTCCCTGAAGT
* *
26687588 TGTAGTGGAATAGATTAAAGCTACAAGTTAC
65 TGCAGTGGAACAGATTAAAGCTACAAGTTAC
* * * * *
26687619 AAATCTTATCTCCCTGAAGTTGCAGAGAAGCAGATTGAAA-CTATAAATCTTATTTCCTTGAGGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCTACAAATCTTATTTCCCTGAAGT
26687683 TGCAGTGGAACAGATTAAAGCTACAAGTTAC
65 TGCAGTGGAACAGATTAAAGCTACAAGTTAC
* * * * * * *
26687714 AAATTTTATCTCCTTGAAGATGTAGTGGAGCAGATTAAAGTTACAAATCTCATCTCCCTGAAGTT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATTTCCCTGAAGTT
26687779 GCAGTGGA
66 GCAGTGGA
26687787 CCAAATTGAC
Statistics
Matches: 299, Mismatches: 50, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
88 67 0.22
91 2 0.01
93 1 0.00
94 3 0.01
95 224 0.75
96 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (95 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAATCTTATTTCCCTGAAGTT
GCAGTGGAACAGATTAAAGCTACAAGTTAC
Found at i:26691205 original size:60 final size:59
Alignment explanation
Indices: 26691105--26691258 Score: 193
Period size: 60 Copynumber: 2.6 Consensus size: 59
26691095 GAAGAACAGA
* * * * * *
26691105 CTTTGTGGAAAAACTCTGGATATGAAAGCCTTTATGGCGAGTACTGAGTGTAAATGATGC
1 CTTTGTGG-AAAACTCTTGATAGGAAAGCCTTTGTAGCGAGTACTAAATGTAAATGATGC
*
26691165 CTTTGTGGTAAATCTCTTGATAGGAAAGCCTTTGTAGCGAGTACTAAATGTAAATGATGC
1 CTTTGTGG-AAAACTCTTGATAGGAAAGCCTTTGTAGCGAGTACTAAATGTAAATGATGC
* *
26691225 CTTTGTAGCAAACT-TTGGATAGGAAAGCCTTTGT
1 CTTTGTGGAAAACTCTT-GATAGGAAAGCCTTTGT
26691259 GAAAAAACTC
Statistics
Matches: 82, Mismatches: 11, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
58 2 0.02
59 21 0.26
60 59 0.72
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (59 bp):
CTTTGTGGAAAACTCTTGATAGGAAAGCCTTTGTAGCGAGTACTAAATGTAAATGATGC
Found at i:26691336 original size:61 final size:61
Alignment explanation
Indices: 26691264--26691383 Score: 186
Period size: 61 Copynumber: 2.0 Consensus size: 61
26691254 TTTGTGAAAA
* *
26691264 AACTCTAGACAGGAAAGCCTTTATGGTGAGTATTAGATGTAAAGGACAACTTTTGTGGCAC
1 AACTCTAGACAGGAAAGCCTTTATAGTGAGTATTAGATGTAAAGGACAACCTTTGTGGCAC
* * * *
26691325 AACTCTGGACAGGAAAGTCTTTATAGTGAGTATTGGATGTAAAGGACAGCCTTTGTGGC
1 AACTCTAGACAGGAAAGCCTTTATAGTGAGTATTAGATGTAAAGGACAACCTTTGTGGC
26691384 GAGTATTGGA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (61 bp):
AACTCTAGACAGGAAAGCCTTTATAGTGAGTATTAGATGTAAAGGACAACCTTTGTGGCAC
Found at i:26691411 original size:31 final size:32
Alignment explanation
Indices: 26691352--26691412 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
26691342 TCTTTATAGT
26691352 GAGTATTGGATGTAAAGGACAGCCTTTGTGGC
1 GAGTATTGGATGTAAAGGACAGCCTTTGTGGC
*
26691384 GAGTATTGGATGTAAAGGA-TGCCTTTGTG
1 GAGTATTGGATGTAAAGGACAGCCTTTGTG
26691413 ACAACCTCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 9 0.32
32 19 0.68
ACGTcount: A:0.25, C:0.10, G:0.34, T:0.31
Consensus pattern (32 bp):
GAGTATTGGATGTAAAGGACAGCCTTTGTGGC
Found at i:26693583 original size:17 final size:17
Alignment explanation
Indices: 26693561--26693610 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 17
26693551 TAAAGTCAAA
26693561 TAAATTGTTTAAAAAAT
1 TAAATTGTTTAAAAAAT
*
26693578 TAAATTATTGTTTTAAAAAT
1 T-AA--ATTGTTTAAAAAAT
*
26693598 TAAATTCTTTAAA
1 TAAATTGTTTAAA
26693611 TGTTGTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
17 9 0.33
18 2 0.07
19 2 0.07
20 14 0.52
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (17 bp):
TAAATTGTTTAAAAAAT
Found at i:26693589 original size:20 final size:20
Alignment explanation
Indices: 26693564--26693603 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
26693554 AGTCAAATAA
26693564 ATTGTTTAAAAAATTAAATT
1 ATTGTTTAAAAAATTAAATT
*
26693584 ATTGTTTTAAAAATTAAATT
1 ATTGTTTAAAAAATTAAATT
26693604 CTTTAAATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
ATTGTTTAAAAAATTAAATT
Found at i:26709027 original size:41 final size:41
Alignment explanation
Indices: 26708970--26709075 Score: 167
Period size: 41 Copynumber: 2.6 Consensus size: 41
26708960 AATGAGATAA
* * *
26708970 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATGT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTAAAATAT
*
26709011 TTCAGACTTTACGTCTACCAGGCTTGACGCCGGTAAAATAT
1 TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTAAAATAT
*
26709052 TTCGGACTTTACGTCTAGCAGGCT
1 TTCAGACTTTACGTCTAGCAGGCT
26709076 AATTGCCAGT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAGGCTTGACGCCGGTAAAATAT
Found at i:26732128 original size:125 final size:125
Alignment explanation
Indices: 26731906--26732148 Score: 459
Period size: 125 Copynumber: 1.9 Consensus size: 125
26731896 TTTTAAGGGA
26731906 TCCTGAAAAAATAATTTCGAGTAGACGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGA
1 TCCTGAAAAAATAATTTCGAGTAGACGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGA
26731971 TGCATTGTCAGCAAAAGTACTGAAATCGCTCCCACATGGACGCGCTTTTGCTATACTAGC
66 TGCATTGTCAGCAAAAGTACTGAAATCGCTCCCACATGGACGCGCTTTTGCTATACTAGC
*
26732031 TCCTGAAAAAATAATTTCGAGTAGATGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGA
1 TCCTGAAAAAATAATTTCGAGTAGACGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGA
* *
26732096 TGCTTTGTCAGCAAAAGTACTGAAATCGCTCCCACGTGGACGCGCTTTTGCTA
66 TGCATTGTCAGCAAAAGTACTGAAATCGCTCCCACATGGACGCGCTTTTGCTA
26732149 CAGTAGTACA
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
125 115 1.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (125 bp):
TCCTGAAAAAATAATTTCGAGTAGACGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGA
TGCATTGTCAGCAAAAGTACTGAAATCGCTCCCACATGGACGCGCTTTTGCTATACTAGC
Found at i:26734096 original size:30 final size:29
Alignment explanation
Indices: 26734045--26734111 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
26734035 TTGCTGTTGC
*
26734045 TGGGCCTAGTGATTGTATGGGCGCT-GATGA
1 TGGGCC-AGTGAATGTATGGGC-CTCGATGA
* *
26734075 TGGGCCAGGTGAATGTCTGGGCCTCGTTGA
1 TGGGCCA-GTGAATGTATGGGCCTCGATGA
26734105 TGGGCCA
1 TGGGCCA
26734112 ATGTCATCGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 3 0.09
30 29 0.91
ACGTcount: A:0.15, C:0.18, G:0.40, T:0.27
Consensus pattern (29 bp):
TGGGCCAGTGAATGTATGGGCCTCGATGA
Found at i:26735800 original size:28 final size:27
Alignment explanation
Indices: 26735747--26735805 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 27
26735737 AAAAAAATTC
*
26735747 AAAAAAATAAAAATTTAAAACTTTTTT
1 AAAAAAATAAAAAATTAAAACTTTTTT
*
26735774 AAAAATAATTAAAAAATTAAAGCTTTTTT
1 AAAAA-AA-TAAAAAATTAAAACTTTTTT
26735803 AAA
1 AAA
26735806 TAGGAATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 5 0.18
28 2 0.07
29 21 0.75
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (27 bp):
AAAAAAATAAAAAATTAAAACTTTTTT
Found at i:26735824 original size:11 final size:11
Alignment explanation
Indices: 26735810--26735854 Score: 74
Period size: 11 Copynumber: 4.2 Consensus size: 11
26735800 TTTAAATAGG
26735810 AATTTGAGAGA
1 AATTTGAGAGA
*
26735821 AATTTGAGAGG
1 AATTTGAGAGA
26735832 AATTTGAGAGA
1 AATTTGAGAGA
26735843 AA-TTGAGAGA
1 AATTTGAGAGA
26735853 AA
1 AA
26735855 GAATTAAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
10 10 0.31
11 22 0.69
ACGTcount: A:0.47, C:0.00, G:0.29, T:0.24
Consensus pattern (11 bp):
AATTTGAGAGA
Found at i:26735850 original size:10 final size:10
Alignment explanation
Indices: 26735813--26735854 Score: 57
Period size: 10 Copynumber: 4.0 Consensus size: 10
26735803 AAATAGGAAT
26735813 TTGAGAGAAA
1 TTGAGAGAAA
*
26735823 TTTGAGAGGAAT
1 -TTGAGA-GAAA
26735835 TTGAGAGAAA
1 TTGAGAGAAA
26735845 TTGAGAGAAA
1 TTGAGAGAAA
26735855 GAATTAAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 13 0.46
11 12 0.43
12 3 0.11
ACGTcount: A:0.45, C:0.00, G:0.31, T:0.24
Consensus pattern (10 bp):
TTGAGAGAAA
Found at i:26736903 original size:25 final size:25
Alignment explanation
Indices: 26736872--26736945 Score: 123
Period size: 25 Copynumber: 3.0 Consensus size: 25
26736862 AATTTAAATT
26736872 TTATATTAATATTAAATAAATATAA
1 TTATATTAATATTAAATAAATATAA
*
26736897 TTATATTAATTTTAAATAAATATAA
1 TTATATTAATATTAAATAAATATAA
*
26736922 TTATGTTAATATTAAATAAA-ATAA
1 TTATATTAATATTAAATAAATATAA
26736946 AAATCTCTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
24 4 0.09
25 42 0.91
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (25 bp):
TTATATTAATATTAAATAAATATAA
Found at i:26737539 original size:22 final size:22
Alignment explanation
Indices: 26737514--26737555 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26737504 TCCCAGAAAT
*
26737514 CCCTAAGTTTTTTTCCCCAAAC
1 CCCTAACTTTTTTTCCCCAAAC
**
26737536 CCCTTTCTTTTTTTCCCCAA
1 CCCTAACTTTTTTTCCCCAA
26737556 TTTCTTTCCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.17, C:0.38, G:0.02, T:0.43
Consensus pattern (22 bp):
CCCTAACTTTTTTTCCCCAAAC
Found at i:26737645 original size:81 final size:80
Alignment explanation
Indices: 26737477--26737740 Score: 292
Period size: 79 Copynumber: 3.3 Consensus size: 80
26737467 AAACCACAAA
* *
26737477 TTCTTTTCCCCCAATCAGTTCCCTCTCTCCCAGAAATCCCTAAGTTTTT-TTCCCCAAACCCCTT
1 TTCTTTTCCCCAAATCAGTTCCCCCTCTCCC-GAAATCCCTAAGTTTTTCTTCCCCAAACCCCTT
26737541 TCTTTTTTTCCCCAAT
65 TCTTTTTTTCCCCAAT
* *
26737557 TTC-TTTCCCCAAATCAGTTCCCCCTCTCTCCGAAATCCCTAAGTTGTTTCTTTCCCACACCCCT
1 TTCTTTTCCCCAAATCAGTTCCCCCTCTC-CCGAAATCCCTAAGTT-TTTCTTCCCCAAACCCCT
26737621 TTC-TTTTTTCCCCAAT
64 TTCTTTTTTTCCCCAAT
* * * ** * *
26737637 TTCTTTTCCCCAAATCAATTCCCTCTC-CCCAAAATCCCTAA--TTTT-TT-CTGAAATCTCTTT
1 TTCTTTTCCCCAAATCAGTTCCCCCTCTCCCGAAATCCCTAAGTTTTTCTTCCCCAAACCCCTTT
***
26737697 CTTTCTTTTTCGTGAAT
66 C-TT-TTTTTCCCCAAT
*
26737714 TTCTTTTCCCCAAATCAATTCCCCCTC
1 TTCTTTTCCCCAAATCAGTTCCCCCTC
26737741 CTCGATATAT
Statistics
Matches: 161, Mismatches: 16, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
74 9 0.06
75 2 0.01
76 4 0.02
77 36 0.22
79 49 0.30
80 25 0.16
81 36 0.22
ACGTcount: A:0.18, C:0.37, G:0.04, T:0.41
Consensus pattern (80 bp):
TTCTTTTCCCCAAATCAGTTCCCCCTCTCCCGAAATCCCTAAGTTTTTCTTCCCCAAACCCCTTT
CTTTTTTTCCCCAAT
Found at i:26738315 original size:13 final size:13
Alignment explanation
Indices: 26738299--26738329 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
26738289 ATGGAAGGAA
26738299 GAAATTTTATTAG
1 GAAATTTTATTAG
26738312 GAAATTTTATTAG
1 GAAATTTTATTAG
*
26738325 AAAAT
1 GAAAT
26738330 AATTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (13 bp):
GAAATTTTATTAG
Found at i:26738355 original size:12 final size:12
Alignment explanation
Indices: 26738338--26738363 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26738328 ATAATTAAAA
26738338 TATTTTGTTTGT
1 TATTTTGTTTGT
26738350 TATTTTGTTTGT
1 TATTTTGTTTGT
26738362 TA
1 TA
26738364 AGGCAGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.73
Consensus pattern (12 bp):
TATTTTGTTTGT
Found at i:26740145 original size:25 final size:25
Alignment explanation
Indices: 26740071--26740145 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
26740061 ATACTTTCTC
*
26740071 TTTTTTTTAATAATTT-A-ATTTAA
1 TTTTTTTTTATAATTTGATATTTAA
* * *
26740094 TTTAATTTTTTTTAATTTGGTACTTAA
1 TTT--TTTTTTATAATTTGATATTTAA
*
26740121 TTTTTTTTTCTAATTTGATATTTAA
1 TTTTTTTTTATAATTTGATATTTAA
26740146 ATTTATCAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
23 3 0.07
25 30 0.73
27 8 0.20
ACGTcount: A:0.28, C:0.03, G:0.04, T:0.65
Consensus pattern (25 bp):
TTTTTTTTTATAATTTGATATTTAA
Found at i:26740809 original size:35 final size:35
Alignment explanation
Indices: 26740763--26740832 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
26740753 TAAATGAATA
*
26740763 AAATTTAATGATTATCATAGCTTACATAAACATTT
1 AAATTTAATGATTATCATAACTTACATAAACATTT
*
26740798 AAATTTAATGATTATCATAACTTATATAAACATTT
1 AAATTTAATGATTATCATAACTTACATAAACATTT
26740833 GAAGAATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.41
Consensus pattern (35 bp):
AAATTTAATGATTATCATAACTTACATAAACATTT
Found at i:26740926 original size:7 final size:7
Alignment explanation
Indices: 26740914--26740938 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26740904 TAAATAATTA
26740914 GATACTT
1 GATACTT
26740921 GATACTT
1 GATACTT
26740928 GATACTT
1 GATACTT
26740935 GATA
1 GATA
26740939 TTATATTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (7 bp):
GATACTT
Found at i:26749653 original size:40 final size:40
Alignment explanation
Indices: 26749608--26749919 Score: 324
Period size: 40 Copynumber: 7.8 Consensus size: 40
26749598 ATAACCACAT
* *
26749608 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * * *
26749648 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-CCTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* *
26749688 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * * *
26749728 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-CCTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* *
26749768 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
26749808 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * * * *
26749848 GCACAAATGCCTTCGAGTCTTAGCCCAGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * *
26749888 GCATAAATGCCTTCAGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
26749920 CATTCAAATG
Statistics
Matches: 225, Mismatches: 42, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
39 7 0.03
40 208 0.92
41 10 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:26749821 original size:120 final size:120
Alignment explanation
Indices: 26749608--26749918 Score: 383
Period size: 120 Copynumber: 2.6 Consensus size: 120
26749598 ATAACCACAT
* * * * * *
26749608 GCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
26749672 CCGGATAAAATCCCTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
65 CCGGATAAAAGCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * *
26749728 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCCCTAGCACAATTGCCTTCGGGTCTTAACC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCC
* * * * *
26749793 CGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CGGATAAAAGC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * * * *
26749848 GCACAAATGCCTTCGAGTCTTAGCCCAGATAAAATCACTAGCATAAATGCCTTCAGGACTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCC
26749913 CGGATA
66 CGGATA
26749919 TCATTCAAAT
Statistics
Matches: 161, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
119 3 0.02
120 155 0.96
121 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (120 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCC
CGGATAAAAGCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:26749919 original size:80 final size:80
Alignment explanation
Indices: 26749608--26749918 Score: 464
Period size: 80 Copynumber: 3.9 Consensus size: 80
26749598 ATAACCACAT
26749608 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
26749673 CGGATAAAATCCCTA
66 CGGATAAAATCCCTA
26749688 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
26749753 CGGATAAAATCCCTA
66 CGGATAAAATCCCTA
26749768 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * *
26749833 CGGAT-ATATCAACTC
66 CGGATAAAATC-CCTA
* * * * * * * * * * *
26749848 GCACAAATGCCTTCGAGTCTTAGCCCAGATAAAATC-ACTAGCATAAATGCCTTCAGGACTTAGC
1 GCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
26749912 CCGGATA
65 CCGGATA
26749919 TCATTCAAAT
Statistics
Matches: 214, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
79 4 0.02
80 207 0.97
81 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATAAAATCCCTA
Found at i:26757073 original size:415 final size:418
Alignment explanation
Indices: 26756300--26757132 Score: 1492
Period size: 415 Copynumber: 2.0 Consensus size: 418
26756290 ACGCACAGTT
26756300 AAGCAAATTGCTCAACTTAAAGCGGAGACAACATCAAGAGAAGCAGAGGCTCAAAGAAAATATGA
1 AAGCAAATTGCTCAACTTAAAGCGGAGACAACATCAAGAGAAGCAGAGGCTCAAAGAAAATATGA
*
26756365 AGAACTCCAGCTATAACCTAAAGCGGAGGCAGCAGCGAGGAAGCAAAAGCAACAAGAAAATATTA
66 AGAACTCCAGCTATAACCTAAAGCGGAGGCAGCAGCGAGGAAGCAAAAGAAACAAGAAAATATTA
* * * *
26756430 TGATGAACTCCAGCTACAGCTTCAGAATATGATGAAAATGTTTCAGCGGTCGCAGAATCTGCCAT
131 TGACGAACTCCAGCTACAACTTCAGAATATGATGAAAATGTTTCAGCAGTCGCAGAATCCGCCAT
*
26756495 CTTAGTCTTTTGTTTACTTATTGTGAGAATATCTTAACAATACAACTTTTGAATGTAATACATTT
196 CTTAGTCTTTTGTTTACTTATTATGAGAATATCTTAACAATACAACTTTTGAATGTAATACATTT
*
26756560 TGTTATTTCATTTATTAATTTATATCATATACATATTTCATTCATGATAGTATCATTTAGATTTG
261 TGTTATTTCATTTATTAATTTAGATCATATACATATTTCATTCATGATAGTATCATTTAGATTTG
*
26756625 AAGTTTTTGATTGGATTTGATGTTACAGGAAATTATGTTTAAAATTTGGGTTCTATATGAATTAA
326 AAGTTTTTGATTGGATTTGATGTTACAGGAAATTATGTTGAAAATTTGGGTTCTATATGAATTAA
*
26756690 AATGGATTGGTAAAATATGCTAAAATTA
391 AATGGATAGGTAAAATATGCTAAAATTA
* *
26756718 AAGCAAATTGCTCAACTTAAAGTGGAGACAACATCAAGAGAAGCAGAGGCTTAAAGAAAATATGA
1 AAGCAAATTGCTCAACTTAAAGCGGAGACAACATCAAGAGAAGCAGAGGCTCAAAGAAAATATGA
26756783 AGAACTCCAGCTATAACCTAAAGCGGAGGCAGCAGCGAGGAAGCAAAAGAAACAAG-AAA-A-TA
66 AGAACTCCAGCTATAACCTAAAGCGGAGGCAGCAGCGAGGAAGCAAAAGAAACAAGAAAATATTA
*
26756845 TGACGAACTCCAGCTACAACTTCAGAATATGATGAAAATGTTTCAGCAGTCGTAGAATCCGCCAT
131 TGACGAACTCCAGCTACAACTTCAGAATATGATGAAAATGTTTCAGCAGTCGCAGAATCCGCCAT
* * *
26756910 CTTAGTCTTTTGTTTTCTTATTATGAGAATATTTTAACAATACAACTTTTGAATGTAATATATTT
196 CTTAGTCTTTTGTTTACTTATTATGAGAATATCTTAACAATACAACTTTTGAATGTAATACATTT
*
26756975 TGTTATTTCATTTATTAATTTAGATCATATACATATTTCATTCATGATAGTATTATTTAGATTTG
261 TGTTATTTCATTTATTAATTTAGATCATATACATATTTCATTCATGATAGTATCATTTAGATTTG
*
26757040 AAGTTTTTGGTTGGATTTGATGTTACAGGAAATTATGTTGAAAATTTGGGTTCTATATGAATTAA
326 AAGTTTTTGATTGGATTTGATGTTACAGGAAATTATGTTGAAAATTTGGGTTCTATATGAATTAA
26757105 AATGGATAGGTAAAATATGCTAAAATTA
391 AATGGATAGGTAAAATATGCTAAAATTA
26757133 GTGGCGTTTT
Statistics
Matches: 398, Mismatches: 17, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
415 276 0.69
416 1 0.00
417 3 0.01
418 118 0.30
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (418 bp):
AAGCAAATTGCTCAACTTAAAGCGGAGACAACATCAAGAGAAGCAGAGGCTCAAAGAAAATATGA
AGAACTCCAGCTATAACCTAAAGCGGAGGCAGCAGCGAGGAAGCAAAAGAAACAAGAAAATATTA
TGACGAACTCCAGCTACAACTTCAGAATATGATGAAAATGTTTCAGCAGTCGCAGAATCCGCCAT
CTTAGTCTTTTGTTTACTTATTATGAGAATATCTTAACAATACAACTTTTGAATGTAATACATTT
TGTTATTTCATTTATTAATTTAGATCATATACATATTTCATTCATGATAGTATCATTTAGATTTG
AAGTTTTTGATTGGATTTGATGTTACAGGAAATTATGTTGAAAATTTGGGTTCTATATGAATTAA
AATGGATAGGTAAAATATGCTAAAATTA
Found at i:26757763 original size:25 final size:24
Alignment explanation
Indices: 26757729--26757777 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
26757719 GTGGTGGATT
26757729 TTTATTTTATTTAATATTAATATA
1 TTTATTTTATTTAATATTAATATA
26757753 TTTATCTTTATTTAATATTAATATA
1 TTTAT-TTTATTTAATATTAATATA
26757778 AAATATGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTATTTTATTTAATATTAATATA
Found at i:26758867 original size:188 final size:187
Alignment explanation
Indices: 26758533--26758903 Score: 589
Period size: 188 Copynumber: 2.0 Consensus size: 187
26758523 AAACCTTTCG
* * *
26758533 AATGCCTAGTCTGTGTCATAACCTTGTGGGTTATCTGAAAAAAGGAAACTAAGGGGATGAGCTTA
1 AATGCCGAGTCCGTGCCATAACCTTGTGGGTTATCTGAAAAAAGGAAACTAAGGGGATGAGCTTA
* * *
26758598 AGAAGCACAGTGTGGGTCTAAACATAATAAAATCAATGCAAAAAAGTAGACATGGCATACAAAAT
66 AGAAGCACAATGTGGGTCTAAACACAAGAAAATCAATGCAAAAAAGTAGACATGGCATACAAAAT
* * *
26758663 AATAGTTCTTAGAACAATCACAGTCGCATAGCAATATAGAGTTTGTCCATTTTCCTT
131 AACAGTTCTCAGAACAATCACAGTCGCATAGCAATATAAAGTTTGTCCATTTTCCTT
* * * *
26758720 AATGCCGAGTCCGTGCCATAACCTTGTGGGTTATTTGTAAAGAAGGAAATTAAGGGTATGAGCTT
1 AATGCCGAGTCCGTGCCATAACCTTGTGGGTTATCTG-AAAAAAGGAAACTAAGGGGATGAGCTT
* *
26758785 AAGAATCTCAATGTGGGTCTAAACACAAGAAAATCAATGCAAAAAAGTAGACATGGCATACAAAA
65 AAGAAGCACAATGTGGGTCTAAACACAAGAAAATCAATGCAAAAAAGTAGACATGGCATACAAAA
*
26758850 TAACAGTTCTCAGAACAATCATAGTCGCATAGCAATATAAAGTTTGTCCATTTT
130 TAACAGTTCTCAGAACAATCACAGTCGCATAGCAATATAAAGTTTGTCCATTTT
26758904 GCTTGTGTAT
Statistics
Matches: 167, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
187 33 0.20
188 134 0.80
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (187 bp):
AATGCCGAGTCCGTGCCATAACCTTGTGGGTTATCTGAAAAAAGGAAACTAAGGGGATGAGCTTA
AGAAGCACAATGTGGGTCTAAACACAAGAAAATCAATGCAAAAAAGTAGACATGGCATACAAAAT
AACAGTTCTCAGAACAATCACAGTCGCATAGCAATATAAAGTTTGTCCATTTTCCTT
Found at i:26763128 original size:38 final size:38
Alignment explanation
Indices: 26763033--26763128 Score: 140
Period size: 38 Copynumber: 2.5 Consensus size: 38
26763023 TTATTGATTG
**
26763033 CATGTTCAA-CATGCCTACTATTACTATTAAACTGAATA
1 CATGTT-AAGCATGCCTACTGCTACTATTAAACTGAATA
* *
26763071 CATGTTAAGCATGTCTACTGCTACTATTGAACTGAATA
1 CATGTTAAGCATGCCTACTGCTACTATTAAACTGAATA
26763109 CATGTTAAGCATGCCTACTG
1 CATGTTAAGCATGCCTACTG
26763129 TTTTTACATG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
37 2 0.04
38 50 0.96
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (38 bp):
CATGTTAAGCATGCCTACTGCTACTATTAAACTGAATA
Found at i:26764916 original size:269 final size:269
Alignment explanation
Indices: 26764430--26764923 Score: 720
Period size: 269 Copynumber: 1.8 Consensus size: 269
26764420 ACTTGAACTT
* *
26764430 TTTTGTTTGAAAACTGTAGATATACTTCAAAATTTAAACTTTCGAGAATACAATATGAACACTCA
1 TTTTGTTTGAAAACTATAGATATACTTCAAAACTTAAACTTTCGAGAATACAATATGAACACTCA
* * * *
26764495 AGGTAGATGTGGTAGGGGTAGGCCGCGTAGGGCTGCACCCGCTGAGCCACCCATTGTTCAGAGGG
66 AGGTAGACGTGGTAGGGGTAGGCCGCATAGGGCTGCACCCACTGAGCCACCCATTGTTCAGAAGG
* * *
26764560 GAAACCAAATCCTTAAAGTGGAGTACGTGGAGAATTCTACCACCAATGGTGACAAAGGTTACGAG
131 AAAACCAAATCCCTAAAGAGGAGTACGTGGAGAATTCTACCACCAATGGTGACAAAGGTTACGAG
* *
26764625 AACAGAGATGATGCATTGTCGCAAACAATGCTGAAGGTTCTGCAAAAGGTTGCTAGAGCCCAAGC
196 AACAGAGACGATGCAGTGTCGCAAACAATGCTGAAGGTTCTGCAAAAGGTTGCTAGAGCCCAAGC
26764690 TAGATCGGG
261 TAGATCGGG
* * * **
26764699 TTTTGTTTGAAAACTATAGATATACTTTAGAACTTAAATTTTTTAGAATACAATATGAACACTCA
1 TTTTGTTTGAAAACTATAGATATACTTCAAAACTTAAACTTTCGAGAATACAATATGAACACTCA
* * * * *
26764764 AGGTAGACGTGGTAGGGGTAGGCTGCATAGGGTTGCACCCATTTAGCCACCCATTGTTTAGAAGG
66 AGGTAGACGTGGTAGGGGTAGGCCGCATAGGGCTGCACCCACTGAGCCACCCATTGTTCAGAAGG
* * ** *
26764829 AAAACCCAATCCCTAAGGAGGAGTACGTGGAGAATTCTACCGA-CAATGGTGGTAGAGGTTACGA
131 AAAACCAAATCCCTAAAGAGGAGTACGTGGAGAATTCTACC-ACCAATGGTGACAAAGGTTACGA
* *
26764893 GAACGGAGACGATGCAGTGTCGCAAGCAATG
195 GAACAGAGACGATGCAGTGTCGCAAACAATG
26764924 TTGGGGATTT
Statistics
Matches: 196, Mismatches: 28, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
269 195 0.99
270 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (269 bp):
TTTTGTTTGAAAACTATAGATATACTTCAAAACTTAAACTTTCGAGAATACAATATGAACACTCA
AGGTAGACGTGGTAGGGGTAGGCCGCATAGGGCTGCACCCACTGAGCCACCCATTGTTCAGAAGG
AAAACCAAATCCCTAAAGAGGAGTACGTGGAGAATTCTACCACCAATGGTGACAAAGGTTACGAG
AACAGAGACGATGCAGTGTCGCAAACAATGCTGAAGGTTCTGCAAAAGGTTGCTAGAGCCCAAGC
TAGATCGGG
Found at i:26765626 original size:26 final size:25
Alignment explanation
Indices: 26765597--26765648 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
26765587 AGTACATGTA
*
26765597 AATTTTGTTATTATATAAAGAAATAT
1 AATTTTATTATTATAT-AAGAAATAT
* *
26765623 AATTTTATTTTTATATAATAAATAT
1 AATTTTATTATTATATAAGAAATAT
26765648 A
1 A
26765649 TAAATTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (25 bp):
AATTTTATTATTATATAAGAAATAT
Found at i:26765656 original size:27 final size:26
Alignment explanation
Indices: 26765607--26765658 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
26765597 AATTTTGTTA
*
26765607 TTATATAAAGAAATATAATTTTATTT
1 TTATATAAAGAAATATAAATTTATTT
26765633 TTATATAATA-AATATATAAATTTATT
1 TTATATAA-AGAA-ATATAAATTTATT
26765659 ACCATAAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (26 bp):
TTATATAAAGAAATATAAATTTATTT
Found at i:26767803 original size:61 final size:62
Alignment explanation
Indices: 26767738--26767864 Score: 159
Period size: 61 Copynumber: 2.1 Consensus size: 62
26767728 CTTTTTTTTT
* * * * * *
26767738 TTGAAACTTTT-AGAATTATAACCAAATTTATAAATTTTGTAAATGTTGAGGGTTAAATTTA
1 TTGAAACTTTTAAGAACTAGAACCAAAATGATAAATTTTGTAAATATTGAGGGCTAAATTTA
* * *
26767799 TTG-AATTTTTAAGAACTAGAACTAAAATGATAAATTTTGTAAATATTGAGGGCTAAATTTG
1 TTGAAACTTTTAAGAACTAGAACCAAAATGATAAATTTTGTAAATATTGAGGGCTAAATTTA
26767860 TTGAA
1 TTGAA
26767865 TTTTTTAAAT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
60 6 0.11
61 48 0.87
62 1 0.02
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (62 bp):
TTGAAACTTTTAAGAACTAGAACCAAAATGATAAATTTTGTAAATATTGAGGGCTAAATTTA
Found at i:26774723 original size:57 final size:57
Alignment explanation
Indices: 26774629--26774736 Score: 180
Period size: 57 Copynumber: 1.9 Consensus size: 57
26774619 TTGTTCCAAC
* *
26774629 GAACATGACTATCTCTTGCTATCTCATGGACAGTTTGAGTTAATGTTAAAAGCTGAG
1 GAACATGACTATCTCTTGCTATCTCATGGACAATTTGAATTAATGTTAAAAGCTGAG
* *
26774686 GAACATGACTATCTCTTGCTATTTCATGGATAATTTGAATTAATGTTAAAA
1 GAACATGACTATCTCTTGCTATCTCATGGACAATTTGAATTAATGTTAAAA
26774737 TAGTGTATGT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 47 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (57 bp):
GAACATGACTATCTCTTGCTATCTCATGGACAATTTGAATTAATGTTAAAAGCTGAG
Found at i:26775501 original size:22 final size:20
Alignment explanation
Indices: 26775458--26775516 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 20
26775448 TCAAAGAGAG
*
26775458 AAAAATAAGTTTTTAATCTTTT
1 AAAAATAA-TTTTT-ATATTTT
*
26775480 AAATATTATATTTTTATATTTT
1 AAA-AATA-ATTTTTATATTTT
26775502 AAAAATAATTTTTAT
1 AAAAATAATTTTTAT
26775517 TGTAATTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
20 8 0.25
21 3 0.09
22 12 0.38
23 8 0.25
24 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (20 bp):
AAAAATAATTTTTATATTTT
Found at i:26775782 original size:27 final size:26
Alignment explanation
Indices: 26775752--26775816 Score: 67
Period size: 28 Copynumber: 2.4 Consensus size: 26
26775742 TCCATAATCC
*
26775752 AAAATAAAAAACCAAACCCTAAAATTTA
1 AAAATAAAAAACCAAA-CCTAAAA-TGA
* * **
26775780 AAATTCAAAATTCAAACCTAAAATGA
1 AAAATAAAAAACCAAACCTAAAATGA
26775806 AAAATAAAAAA
1 AAAATAAAAAA
26775817 TAACTATAAT
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
26 10 0.34
27 7 0.24
28 12 0.41
ACGTcount: A:0.66, C:0.14, G:0.02, T:0.18
Consensus pattern (26 bp):
AAAATAAAAAACCAAACCTAAAATGA
Found at i:26775817 original size:27 final size:28
Alignment explanation
Indices: 26775752--26775817 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 28
26775742 TCCATAATCC
**
26775752 AAAATAAAAAA-CCAAACCCTAAAATTT
1 AAAATAAAAAATCCAAACCCTAAAATGA
** *
26775779 AAAATTCAAAATTCAAA-CCTAAAATGA
1 AAAATAAAAAATCCAAACCCTAAAATGA
26775806 AAAATAAAAAAT
1 AAAATAAAAAAT
26775818 AACTATAATT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.65, C:0.14, G:0.02, T:0.20
Consensus pattern (28 bp):
AAAATAAAAAATCCAAACCCTAAAATGA
Found at i:26776480 original size:15 final size:16
Alignment explanation
Indices: 26776462--26776497 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
26776452 TTTCGAGAAT
26776462 TTTTAAATTTATAT-A
1 TTTTAAATTTATATAA
*
26776477 TTTTAAATTTTTATAA
1 TTTTAAATTTATATAA
26776493 TTTTA
1 TTTTA
26776498 TTTTTAGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.68
16 6 0.32
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTAAATTTATATAA
Found at i:26784005 original size:46 final size:46
Alignment explanation
Indices: 26783898--26784141 Score: 325
Period size: 46 Copynumber: 5.6 Consensus size: 46
26783888 TACGTATGAT
* *
26783898 CACTTATCAC-TTCTC-CTTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* * *
26783941 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAGGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
26783987 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
26784033 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T--AG----
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
26784069 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
26784115 CACTTATCACTTTATCTCTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
26784142 AGTACTCAAA
Statistics
Matches: 180, Mismatches: 8, Indels: 23
0.85 0.04 0.11
Matches are distributed among these distances:
36 29 0.16
38 3 0.02
40 3 0.02
42 3 0.02
43 10 0.06
44 7 0.04
45 21 0.12
46 104 0.58
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:26784074 original size:36 final size:36
Alignment explanation
Indices: 26784033--26784105 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
26784023 CTAAAGCTAC
26784033 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
* *
26784069 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
26784105 C
1 C
26784106 TAAAGCTACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
Found at i:26784124 original size:82 final size:82
Alignment explanation
Indices: 26783987--26784141 Score: 283
Period size: 82 Copynumber: 1.9 Consensus size: 82
26783977 CTAAGGCTAT
*
26783987 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACT
26784052 TGATCAGATAAGTATAG
66 TGATCAGATAAGTATAG
* *
26784069 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACT
26784134 TGATCAGA
66 TGATCAGA
26784142 AGTACTCAAA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 70 1.00
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (82 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACT
TGATCAGATAAGTATAG
Found at i:26789580 original size:2 final size:2
Alignment explanation
Indices: 26789569--26789597 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
26789559 TTGGTGATGG
26789569 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26789598 GTGTGTTCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:26789839 original size:33 final size:32
Alignment explanation
Indices: 26789717--26789939 Score: 95
Period size: 33 Copynumber: 6.7 Consensus size: 32
26789707 AACTGACGGA
* * * * *
26789717 TAAGACCATAACTGGGTTATGGCACTATGAACG
1 TAAGACCATAACTGGGCTATGACATTCT-AATG
*** * *
26789750 TAAGACCATGGTTGGGCCATGACAATGTTTATATG
1 TAAGACCATAACTGGGCTATGAC-AT-TCTA-ATG
* * *
26789785 TAAAACCATAGCTAGGCTATGACATTCTAATG
1 TAAGACCATAACTGGGCTATGACATTCTAATG
* * * *
26789817 ATAAGACCATAACTGGGTTATGACACTATGAACG
1 -TAAGACCATAACTGGGCTATGACATTCT-AATG
* *** * * * *
26789851 TAATACCATGGTTGGACCATGGCAGTGTTTATATG
1 TAAGACCATAACTGGGCTATGACA-T-TCTA-ATG
* * *
26789886 TAAGACCATAGCTGGGCTATGGCATTCTGATG
1 TAAGACCATAACTGGGCTATGACATTCTAATG
*
26789918 ATAAGACCATAACTGGGTTATG
1 -TAAGACCATAACTGGGCTATG
26789940 GCACTACGAA
Statistics
Matches: 139, Mismatches: 42, Indels: 18
0.70 0.21 0.09
Matches are distributed among these distances:
32 6 0.04
33 79 0.57
34 9 0.06
35 45 0.32
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (32 bp):
TAAGACCATAACTGGGCTATGACATTCTAATG
Found at i:26789894 original size:101 final size:101
Alignment explanation
Indices: 26789715--26789954 Score: 381
Period size: 101 Copynumber: 2.4 Consensus size: 101
26789705 TGAACTGACG
*
26789715 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGGGCCATGACAATGTTT
1 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGACAATGTTT
26789780 ATATGTAAAACCATAGCTAGGCTATGACATTCTAAT
66 ATATGTAAAACCATAGCTAGGCTATGACATTCTAAT
* * * *
26789816 GATAAGACCATAACTGGGTTATGACACTATGAACGTAATACCATGGTTGGACCATGGCAGTGTTT
1 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGACAATGTTT
* * * *
26789881 ATATGTAAGACCATAGCTGGGCTATGGCATTCTGAT
66 ATATGTAAAACCATAGCTAGGCTATGACATTCTAAT
* *
26789917 GATAAGACCATAACTGGGTTATGGCACTACGAATGTAA
1 GATAAGACCATAACTGGGTTATGGCACTATGAACGTAA
26789955 AGGATGAATT
Statistics
Matches: 127, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 127 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (101 bp):
GATAAGACCATAACTGGGTTATGGCACTATGAACGTAAGACCATGGTTGGACCATGACAATGTTT
ATATGTAAAACCATAGCTAGGCTATGACATTCTAAT
Found at i:26792642 original size:21 final size:21
Alignment explanation
Indices: 26792618--26792668 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
26792608 ATGATAACGT
*
26792618 AAAATGAAAT-AAAAATTAAAA
1 AAAAAGAAATGAAAAATT-AAA
* *
26792639 AAAAAGATATGAAACATTAAA
1 AAAAAGAAATGAAAAATTAAA
*
26792660 TAAAAGAAA
1 AAAAAGAAA
26792669 CTTCCTGTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.73, C:0.02, G:0.08, T:0.18
Consensus pattern (21 bp):
AAAAAGAAATGAAAAATTAAA
Found at i:26793157 original size:21 final size:20
Alignment explanation
Indices: 26793133--26793179 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
26793123 TATAGGTATT
26793133 AATTTATTAATTATAAA-TAAA
1 AATTTATTAA--ATAAATTAAA
*
26793154 AATTAATTAAATAAATTAAA
1 AATTTATTAAATAAATTAAA
*
26793174 CATTTA
1 AATTTA
26793180 ATGTATCTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 5 0.23
20 8 0.36
21 9 0.41
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
AATTTATTAAATAAATTAAA
Found at i:26807376 original size:21 final size:22
Alignment explanation
Indices: 26807338--26807398 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 22
26807328 TGTGTGGGAG
*
26807338 GAGGCACATGACCATGTG-GCT
1 GAGGCACATGACCGTGTGAGCT
*
26807359 GAGGCACATGCCCGTGTGAGCT
1 GAGGCACATGACCGTGTGAGCT
* *
26807381 -AGGGACATGGCCGTGTGA
1 GAGGCACATGACCGTGTGA
26807399 ATAGGCCATG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 32 0.91
22 3 0.09
ACGTcount: A:0.21, C:0.23, G:0.38, T:0.18
Consensus pattern (22 bp):
GAGGCACATGACCGTGTGAGCT
Found at i:26813237 original size:25 final size:25
Alignment explanation
Indices: 26813205--26813260 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
26813195 AAATACTAAT
* **
26813205 TTTTAACGGTATGGATTTATAAAAA
1 TTTTAACGGCATAAATTTATAAAAA
*
26813230 TTTTAACGGCATAAATTTATAAAAT
1 TTTTAACGGCATAAATTTATAAAAA
26813255 TTTTAA
1 TTTTAA
26813261 TAGAAAAACC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (25 bp):
TTTTAACGGCATAAATTTATAAAAA
Found at i:26814883 original size:36 final size:35
Alignment explanation
Indices: 26814801--26814888 Score: 88
Period size: 36 Copynumber: 2.5 Consensus size: 35
26814791 GAAAATGAAT
*
26814801 AAAATTAT-AAACATACAAAAAATATACATGCATGTT
1 AAAATTATGAAA-ATA-AAAAAATATACATGCATGTG
* * * * *
26814837 TAAATCATGAAATATAAAAATATATATATGTATGTG
1 AAAATTATGAAA-ATAAAAAAATATACATGCATGTG
26814873 AAAATTATGAAAATAA
1 AAAATTATGAAAATAA
26814889 GATAAAAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
35 4 0.10
36 32 0.76
37 6 0.14
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.31
Consensus pattern (35 bp):
AAAATTATGAAAATAAAAAAATATACATGCATGTG
Found at i:26815002 original size:12 final size:11
Alignment explanation
Indices: 26814987--26815049 Score: 54
Period size: 12 Copynumber: 5.4 Consensus size: 11
26814977 TGTAGATATA
26814987 ATAATATATAAC
1 ATAATA-ATAAC
*
26814999 ATAACAATAAC
1 ATAATAATAAC
*
26815010 AATAATAATAAAA
1 -ATAATAAT-AAC
26815023 ATAATAATAAC
1 ATAATAATAAC
* *
26815034 AATATTAATAAA
1 -ATAATAATAAC
26815046 ATAA
1 ATAA
26815050 ACTAAAGAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
11 10 0.24
12 29 0.71
13 2 0.05
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (11 bp):
ATAATAATAAC
Found at i:26815010 original size:6 final size:6
Alignment explanation
Indices: 26814994--26815037 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
26814984 ATAATAATAT
* * *
26814994 ATAAC- ATAACA ATAACA ATAATA ATAAAA ATAATA ATAACA ATA
1 ATAACA ATAACA ATAACA ATAACA ATAACA ATAACA ATAACA ATA
26815038 TTAATAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
5 5 0.15
6 29 0.85
ACGTcount: A:0.68, C:0.09, G:0.00, T:0.23
Consensus pattern (6 bp):
ATAACA
Found at i:26815026 original size:24 final size:25
Alignment explanation
Indices: 26814984--26815046 Score: 83
Period size: 24 Copynumber: 2.5 Consensus size: 25
26814974 ATATGTAGAT
26814984 ATAATAATATATAACATAACAATAACA
1 ATAATAATA-A-AACATAACAATAACA
*
26815011 ATAATAATAAAA-ATAATAATAACA
1 ATAATAATAAAACATAACAATAACA
*
26815035 ATATTAATAAAA
1 ATAATAATAAAA
26815047 TAAACTAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 22 0.65
25 2 0.06
26 1 0.03
27 9 0.26
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (25 bp):
ATAATAATAAAACATAACAATAACA
Found at i:26842715 original size:40 final size:40
Alignment explanation
Indices: 26842667--26843054 Score: 623
Period size: 40 Copynumber: 9.7 Consensus size: 40
26842657 GCAAACACAT
* * *
26842667 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
26842707 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
26842747 TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
26842787 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
26842827 TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
26842867 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
26842907 TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
26842947 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
26842987 TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
26843027 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
26843055 TCCAATGCTC
Statistics
Matches: 317, Mismatches: 31, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 317 1.00
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.32
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:26842800 original size:80 final size:80
Alignment explanation
Indices: 26842667--26843054 Score: 704
Period size: 80 Copynumber: 4.8 Consensus size: 80
26842657 GCAAACACAT
* * ** * *
26842667 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGACA
*
26842732 TATCAACTCGCATAA
66 TATCAACTTGCATAA
26842747 TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGACA
1 TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGACA
26842812 TATCAACTTGCATAA
66 TATCAACTTGCATAA
26842827 TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGACA
1 TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGACA
26842892 TATCAACTTGCATAA
66 TATCAACTTGCATAA
26842907 TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGACA
1 TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGACA
26842972 TATCAACTTGCATAA
66 TATCAACTTGCATAA
*
26842987 TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGACA
26843052 TAT
66 TAT
26843055 TCCAATGCTC
Statistics
Matches: 300, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 300 1.00
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.32
Consensus pattern (80 bp):
TTGCCTTCGGGTTTTAGCCCGGTTATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGACA
TATCAACTTGCATAA
Found at i:26851588 original size:15 final size:16
Alignment explanation
Indices: 26851559--26851588 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26851549 CAAACATGCT
26851559 TTAACACATTATCAAA
1 TTAACACATTATCAAA
26851575 TTAACACA-TATCAA
1 TTAACACATTATCAA
26851589 CAAGCCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:26852702 original size:25 final size:25
Alignment explanation
Indices: 26852668--26852761 Score: 152
Period size: 25 Copynumber: 3.8 Consensus size: 25
26852658 TCCTGTACAT
*
26852668 TGCTCACATGAGCTGTGAATCAGAA
1 TGCTCACACGAGCTGTGAATCAGAA
*
26852693 TGCTCACATGAGCTGTGAATCAGAA
1 TGCTCACACGAGCTGTGAATCAGAA
* *
26852718 TGCTCACACGAGCTATGAATTAGAA
1 TGCTCACACGAGCTGTGAATCAGAA
26852743 TGCTCACACGAGCTGTGAA
1 TGCTCACACGAGCTGTGAA
26852762 AATGGGCCTG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (25 bp):
TGCTCACACGAGCTGTGAATCAGAA
Found at i:26854314 original size:28 final size:28
Alignment explanation
Indices: 26854232--26854316 Score: 84
Period size: 28 Copynumber: 3.0 Consensus size: 28
26854222 GAGCTGTTAT
**
26854232 AAAGCCTTTGTGGCAAACCTCTACAAAAG
1 AAAGCCTTTGTGGCAAA-CTCTAGTAAAG
* * *
26854261 AAAGCCTTTATGATG-AACCT-TTGTAAAG
1 AAAGCCTTTGTG--GCAAACTCTAGTAAAG
26854289 AAAGCCTTTGTGGCAAACTCTAGTAAAG
1 AAAGCCTTTGTGGCAAACTCTAGTAAAG
26854317 GAATCCTCGT
Statistics
Matches: 44, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
26 1 0.02
27 4 0.09
28 23 0.52
29 13 0.30
30 2 0.05
31 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (28 bp):
AAAGCCTTTGTGGCAAACTCTAGTAAAG
Found at i:26855963 original size:50 final size:50
Alignment explanation
Indices: 26855902--26856008 Score: 133
Period size: 50 Copynumber: 2.1 Consensus size: 50
26855892 ACATGAGAGT
* * *
26855902 TCTCATATCGGTGCCCATGCCATGTCCTAGAAATGGTCTTACGGGGGACC
1 TCTCATATCGGTACCAACGCCATGTCCTAGAAATGGTCTTACGGGGGACC
* * * * * *
26855952 TCTCATCTCGGTACCAACGCCATGTGCTAGACATTGTCTTATGTGGGACC
1 TCTCATATCGGTACCAACGCCATGTCCTAGAAATGGTCTTACGGGGGACC
26856002 TCTCATA
1 TCTCATA
26856009 ACCTCAATAA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (50 bp):
TCTCATATCGGTACCAACGCCATGTCCTAGAAATGGTCTTACGGGGGACC
Found at i:26868912 original size:16 final size:16
Alignment explanation
Indices: 26868891--26868924 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
26868881 AATTATTCTA
26868891 GGGCTTTAATTAAATT
1 GGGCTTTAATTAAATT
26868907 GGGCTTTAATTAAATT
1 GGGCTTTAATTAAATT
26868923 GG
1 GG
26868925 AAACCATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.41
Consensus pattern (16 bp):
GGGCTTTAATTAAATT
Found at i:26873313 original size:29 final size:29
Alignment explanation
Indices: 26873254--26873323 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
26873244 GTGCCAGTGA
* * * *
26873254 TTACAGTTATCATGTACTTTGTACTGATG
1 TTACAATTATCAAGCACTTTGTACCGATG
*
26873283 TTACAATTATCAAGCACTTTGTACCGGTG
1 TTACAATTATCAAGCACTTTGTACCGATG
* *
26873312 TTATATTTATCA
1 TTACAATTATCA
26873324 GGTACCATTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (29 bp):
TTACAATTATCAAGCACTTTGTACCGATG
Found at i:26879088 original size:20 final size:20
Alignment explanation
Indices: 26879052--26879089 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26879042 TCTAACTTTT
*
26879052 TTGAAAAATAGTTTAACTGA
1 TTGAAAAATAATTTAACTGA
26879072 TTGAAAAA-AATTCTAACT
1 TTGAAAAATAATT-TAACT
26879090 TGACTGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (20 bp):
TTGAAAAATAATTTAACTGA
Found at i:26884712 original size:51 final size:52
Alignment explanation
Indices: 26884657--26884755 Score: 130
Period size: 52 Copynumber: 1.9 Consensus size: 52
26884647 CTCCTTTCCT
* *
26884657 TACAAACATAGAATTAA-AATT-TTGTTTTTAGTATCCAAATTCTTTTGTCCC
1 TACAAACATAAAATTAATAATTATTGTTTTTA-TACCCAAATTCTTTTGTCCC
** *
26884708 TACAAACATAAAATTAATTTTTATTTTTTTTATACCCAAATTCTTTTG
1 TACAAACATAAAATTAATAATTATTGTTTTTATACCCAAATTCTTTTG
26884756 GGTCCATAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
51 16 0.39
52 17 0.41
53 8 0.20
ACGTcount: A:0.34, C:0.14, G:0.05, T:0.46
Consensus pattern (52 bp):
TACAAACATAAAATTAATAATTATTGTTTTTATACCCAAATTCTTTTGTCCC
Found at i:26890122 original size:20 final size:20
Alignment explanation
Indices: 26890093--26890146 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
26890083 ACAAATAGTT
26890093 TAAC-TGATTGAAAAAATTC
1 TAACTTGATTGAAAAAATTC
* *
26890112 TAACTTGATTGAAATAATTT
1 TAACTTGATTGAAAAAATTC
*
26890132 TAACTTGATTTAAAA
1 TAACTTGATTGAAAA
26890147 GTTTATTCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 4 0.13
20 26 0.87
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.39
Consensus pattern (20 bp):
TAACTTGATTGAAAAAATTC
Found at i:26892420 original size:12 final size:12
Alignment explanation
Indices: 26892403--26892440 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
26892393 GGTACAAGCA
26892403 ATCATGGAGGAT
1 ATCATGGAGGAT
26892415 ATCATGGAGGAT
1 ATCATGGAGGAT
**
26892427 ATTGTGGAGGAT
1 ATCATGGAGGAT
26892439 AT
1 AT
26892441 AGAGGCAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.32, C:0.05, G:0.34, T:0.29
Consensus pattern (12 bp):
ATCATGGAGGAT
Found at i:26897300 original size:53 final size:53
Alignment explanation
Indices: 26897233--26897338 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
26897223 TTGAGGGTTA
*
26897233 TTTGTTTTTCGGGTTTTTGGGGTTTAGTTTTATCTCCATCTTTTGTACTCTTC
1 TTTGTTTTTCGGGTTTTCGGGGTTTAGTTTTATCTCCATCTTTTGTACTCTTC
26897286 TTTGTTTTTCGGGTTTTCGGGGTTTAGTTTTATCTCCATCTTTTGTACTCTTC
1 TTTGTTTTTCGGGTTTTCGGGGTTTAGTTTTATCTCCATCTTTTGTACTCTTC
26897339 ATTCTTTTGC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.08, C:0.16, G:0.19, T:0.58
Consensus pattern (53 bp):
TTTGTTTTTCGGGTTTTCGGGGTTTAGTTTTATCTCCATCTTTTGTACTCTTC
Found at i:26906586 original size:3 final size:3
Alignment explanation
Indices: 26906578--26906641 Score: 119
Period size: 3 Copynumber: 21.3 Consensus size: 3
26906568 GCTCCTATTC
*
26906578 ATA ATA ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26906626 ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
26906642 CAGAAATGAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:26924668 original size:15 final size:16
Alignment explanation
Indices: 26924638--26924670 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
26924628 CTCCTAAATC
*
26924638 ACATAATGTCTTTCCA
1 ACATAATGTATTTCCA
26924654 ACATAATG-ATTTCCA
1 ACATAATGTATTTCCA
26924669 AC
1 AC
26924671 TGAACAAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (16 bp):
ACATAATGTATTTCCA
Found at i:26927628 original size:36 final size:36
Alignment explanation
Indices: 26927588--26927663 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 36
26927578 ATGTCCAAAG
* *
26927588 TCCATTTACAACGAAAACTAACTAATTCCTGGGAGT
1 TCCATTTACAACCAAAACCAACTAATTCCTGGGAGT
26927624 TCCATTTACAACCAAAACCAACTAATTCCTGGGAGT
1 TCCATTTACAACCAAAACCAACTAATTCCTGGGAGT
26927660 TCCA
1 TCCA
26927664 CAATGCCTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.36, C:0.26, G:0.12, T:0.26
Consensus pattern (36 bp):
TCCATTTACAACCAAAACCAACTAATTCCTGGGAGT
Done.