Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 86 of 203
Found at i:27378107 original size:29 final size:31
Alignment explanation
Indices: 27378046--27378111 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
27378036 ACAAAAGAAG
*
27378046 AAAAA-AGCTTGTTTAACAAAACGAGATAGA
1 AAAAAGAGCTTGTTTAACAAAACGAGATAAA
*
27378076 AAAAAGAGTTTGTTTAACAAAACGA-A-AAA
1 AAAAAGAGCTTGTTTAACAAAACGAGATAAA
27378105 AAAAAGA
1 AAAAAGA
27378112 AGAGCTGCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 9 0.27
30 6 0.18
31 18 0.55
ACGTcount: A:0.59, C:0.08, G:0.15, T:0.18
Consensus pattern (31 bp):
AAAAAGAGCTTGTTTAACAAAACGAGATAAA
Found at i:27378109 original size:30 final size:29
Alignment explanation
Indices: 27378024--27378109 Score: 84
Period size: 31 Copynumber: 2.9 Consensus size: 29
27378014 ACGGTTTCCA
* *
27378024 TTGTTTAATAGAAC-AAAAGAAGAAAAAAGC
1 TTGTTTAACAAAACGAAAA-AA-AAAAAAGC
* * *
27378054 TTGTTTAACAAAACGAGATAGAAAAAAGAGT
1 TTGTTTAACAAAACGA-A-AAAAAAAAAAGC
27378085 TTGTTTAACAAAACGAAAAAAAAAA
1 TTGTTTAACAAAACGAAAAAAAAAA
27378110 GAAGAGCTGC
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
29 7 0.15
30 13 0.28
31 23 0.49
32 3 0.06
33 1 0.02
ACGTcount: A:0.57, C:0.07, G:0.15, T:0.21
Consensus pattern (29 bp):
TTGTTTAACAAAACGAAAAAAAAAAAAGC
Found at i:27384460 original size:50 final size:50
Alignment explanation
Indices: 27384383--27384725 Score: 454
Period size: 50 Copynumber: 6.8 Consensus size: 50
27384373 ATTTGGGTAA
27384383 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
27384433 -GTAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGACG
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
27384483 AGAGGTCCCATATAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
27384533 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCAAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * *
27384583 AGAGGTCCCATATAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
27384633 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
27384683 AGAACATCCCATGTAAGACCATGTTTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
27384726 TGTTATGGTC
Statistics
Matches: 249, Mismatches: 41, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
49 1 0.00
50 214 0.86
51 34 0.14
ACGTcount: A:0.26, C:0.24, G:0.31, T:0.19
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:27384556 original size:100 final size:100
Alignment explanation
Indices: 27384383--27384725 Score: 544
Period size: 100 Copynumber: 3.4 Consensus size: 100
27384373 ATTTGGGTAA
* * * *
27384383 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG-GTAGGTCCCCTGTA
1 AGAGGTCCCATATAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAG-AGGTCCCCCGTA
27384447 AGACCATGTCTGGGACATGGCATGGGCACCAAGACG
65 AGACCATGTCTGGGACATGGCATGGGCACCAAGACG
27384483 AGAGGTCCCATATAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAA
1 AGAGGTCCCATATAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAA
27384548 GACCATGTCTGGGACATGGCATGGGCACCAAGACG
66 GACCATGTCTGGGACATGGCATGGGCACCAAGACG
27384583 AGAGGTCCCATATAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAA
1 AGAGGTCCCATATAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAA
* * *
27384648 GACCATGTCTGGGACATGGCATGGGCACCGATATG
66 GACCATGTCTGGGACATGGCATGGGCACCAAGACG
** * * * *
27384683 AGAACATCCCATGTAAGACCATGTTTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATATAAGACCATGTCTAGGACATGGCGTTGGCA
27384726 TGTTATGGTC
Statistics
Matches: 228, Mismatches: 13, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
100 193 0.85
101 35 0.15
ACGTcount: A:0.26, C:0.24, G:0.31, T:0.19
Consensus pattern (100 bp):
AGAGGTCCCATATAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAA
GACCATGTCTGGGACATGGCATGGGCACCAAGACG
Found at i:27394210 original size:13 final size:13
Alignment explanation
Indices: 27394192--27394219 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
27394182 ATGGTAAGAA
27394192 AATTTTTTTAATT
1 AATTTTTTTAATT
27394205 AATTTTTTTAATT
1 AATTTTTTTAATT
27394218 AA
1 AA
27394220 AACAATTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
AATTTTTTTAATT
Found at i:27394750 original size:6 final size:6
Alignment explanation
Indices: 27394741--27394774 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
27394731 GCAAGTTCAA
*
27394741 GCTCAG GCTCAG GCTCAG GCTCAG GCTCAA GCTC
1 GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTC
27394775 GGGAGAAAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.35, G:0.29, T:0.18
Consensus pattern (6 bp):
GCTCAG
Found at i:27396800 original size:43 final size:42
Alignment explanation
Indices: 27396739--27396848 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
27396729 CAATACCATC
* *
27396739 GTCCCAAACATGGTCTTACATGTAA-TCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACA-GTAAGTCAAATA-CGATGCCAAT
* **
27396782 GTCCCAGACAGGGTCTTACACAAAGTCAAATACGATGCCAAT
1 GTCCCAGACATGGTCTTACAGTAAGTCAAATACGATGCCAAT
* *
27396824 GTTCCAGAAATGGTCTTACACGTAA
1 GTCCCAGACATGGTCTTACA-GTAA
27396849 ATCTCAAATC
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 28 0.51
43 27 0.49
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACAGTAAGTCAAATACGATGCCAAT
Found at i:27399092 original size:28 final size:28
Alignment explanation
Indices: 27399060--27399120 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
27399050 GATGCACTTT
27399060 ACTTGAACCCGTGACCACAACATCGTCA
1 ACTTGAACCCGTGACCACAACATCGTCA
* * * *
27399088 ACTTGGAGCCGTGATCGCAACATCGTCA
1 ACTTGAACCCGTGACCACAACATCGTCA
27399116 ACTTG
1 ACTTG
27399121 GAGCCCAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (28 bp):
ACTTGAACCCGTGACCACAACATCGTCA
Found at i:27399121 original size:28 final size:28
Alignment explanation
Indices: 27399068--27399125 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
27399058 TTACTTGAAC
27399068 CCGTGACCACAACATCGTCAACTTGGAG
1 CCGTGACCACAACATCGTCAACTTGGAG
* *
27399096 CCGTGATCGCAACATCGTCAACTTGGAG
1 CCGTGACCACAACATCGTCAACTTGGAG
27399124 CC
1 CC
27399126 CAAGTTGCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.26, C:0.33, G:0.22, T:0.19
Consensus pattern (28 bp):
CCGTGACCACAACATCGTCAACTTGGAG
Found at i:27399883 original size:13 final size:13
Alignment explanation
Indices: 27399867--27399904 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
27399857 AATATAATCT
*
27399867 TAAACATTA-AAA
1 TAAATATTATAAA
27399879 CTAAATATTATAAA
1 -TAAATATTATAAA
27399893 TAAATATTATAA
1 TAAATATTATAA
27399905 TATACAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 20 0.87
14 3 0.13
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (13 bp):
TAAATATTATAAA
Found at i:27399981 original size:69 final size:69
Alignment explanation
Indices: 27399908--27400126 Score: 203
Period size: 69 Copynumber: 3.1 Consensus size: 69
27399898 ATTATAATAT
27399908 ACAAATTATTATTACAAACTAAAAAGAACATACATTAAAACTATCATAATCTATCTCTAAAACTC
1 ACAAATTATTATTACAAACTAAAAAGAACATACATTAAAACTATCATAATCTATCTCTAAAACTC
27399973 CAAC
66 CAAC
* * * * * * ***
27399977 ACAAATACAATTTTTACAAAC-AAAACTATAATCTTAAACATTAAATCTA-AAT-AT-TATAAAT
1 ACAAAT--TATTATTACAAACTAAAA--AGAA-C--ATACATTAAAACTATCATAATCTATCTCT
* ** *
27400038 AAATATTATAATAT
59 AAA-ACT-CCA-AC
27400052 ACAAATTATTATTACAAACTAAAAAGAACATACATTAAAACTATCATAATCTATCTCTAAAACTC
1 ACAAATTATTATTACAAACTAAAAAGAACATACATTAAAACTATCATAATCTATCTCTAAAACTC
27400117 CAAC
66 CAAC
27400121 ACAAAT
1 ACAAAT
27400127 ACAATTTTTA
Statistics
Matches: 110, Mismatches: 26, Indels: 28
0.67 0.16 0.17
Matches are distributed among these distances:
69 25 0.23
70 7 0.06
71 16 0.15
72 20 0.18
73 16 0.15
74 7 0.06
75 19 0.17
ACGTcount: A:0.53, C:0.17, G:0.01, T:0.30
Consensus pattern (69 bp):
ACAAATTATTATTACAAACTAAAAAGAACATACATTAAAACTATCATAATCTATCTCTAAAACTC
CAAC
Found at i:27400019 original size:75 final size:75
Alignment explanation
Indices: 27399939--27400165 Score: 231
Period size: 75 Copynumber: 3.1 Consensus size: 75
27399929 AAAAGAACAT
27399939 ACATTAAAACTATCATAATCTATCTCTAAAACTCCAACACAAATACAATTTTTACAAACAAAACT
1 ACATTAAAACTATCATAATCTATCTCTAAAACTCCAACACAAATACAATTTTTACAAACAAAACT
27400004 ATAATCTTAA
66 ATAATCTTAA
* * *** * ** * * *
27400014 ACATTAAATCTA-AAT-AT-TATAAATAAATATTATAATATACAAAT--TATTATTACAAACTAA
1 ACATTAAAACTATCATAATCTATCTCTAAA-ACT-CCA-ACACAAATACAATTTTTACAAAC-AA
* *
27400074 AA--AGAA-C--AT
62 AACTATAATCTTAA
27400083 ACATTAAAACTATCATAATCTATCTCTAAAACTCCAACACAAATACAATTTTTACAAACAAAACT
1 ACATTAAAACTATCATAATCTATCTCTAAAACTCCAACACAAATACAATTTTTACAAACAAAACT
27400148 ATAATCTTAA
66 ATAATCTTAA
27400158 ACATTAAA
1 ACATTAAA
27400166 TCTAAAAATA
Statistics
Matches: 112, Mismatches: 26, Indels: 28
0.67 0.16 0.17
Matches are distributed among these distances:
69 19 0.17
70 7 0.06
71 16 0.14
72 20 0.18
73 16 0.14
74 7 0.06
75 27 0.24
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.30
Consensus pattern (75 bp):
ACATTAAAACTATCATAATCTATCTCTAAAACTCCAACACAAATACAATTTTTACAAACAAAACT
ATAATCTTAA
Found at i:27400032 original size:13 final size:14
Alignment explanation
Indices: 27400003--27400049 Score: 53
Period size: 13 Copynumber: 3.4 Consensus size: 14
27399993 CAAACAAAAC
*
27400003 TATAATCTTAAACAT
1 TATAATC-TAAATAT
27400018 TA-AATCTAAATAT
1 TATAATCTAAATAT
*
27400031 TATAA-ATAAATAT
1 TATAATCTAAATAT
27400044 TATAAT
1 TATAAT
27400050 ATACAAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 20 0.71
14 6 0.21
15 2 0.07
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.40
Consensus pattern (14 bp):
TATAATCTAAATAT
Found at i:27400179 original size:19 final size:19
Alignment explanation
Indices: 27400155--27400199 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
27400145 ACTATAATCT
27400155 TAAACATTAAATCTAAAA-A
1 TAAACATTAAAT-TAAAATA
*
27400174 TAAACAATAAATTAAAATA
1 TAAACATTAAATTAAAATA
27400193 TAAACAT
1 TAAACAT
27400200 ACATATAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (19 bp):
TAAACATTAAATTAAAATA
Found at i:27400185 original size:144 final size:144
Alignment explanation
Indices: 27399843--27400171 Score: 633
Period size: 144 Copynumber: 2.3 Consensus size: 144
27399833 AAAACAATTT
*
27399843 TTTTTACAAACTAAAA-TATAATCTTAAACATTAAAACTAAATATTATAAATAAATATTATAATA
1 TTTTTACAAAC-AAAACTATAATCTTAAACATTAAATCTAAATATTATAAATAAATATTATAATA
27399907 TACAAATTATTATTACAAACTAAAAAGAACATACATTAAAACTATCATAATCTATCTCTAAAACT
65 TACAAATTATTATTACAAACTAAAAAGAACATACATTAAAACTATCATAATCTATCTCTAAAACT
27399972 CCAACACAAATACAA
130 CCAACACAAATACAA
27399987 TTTTTACAAACAAAACTATAATCTTAAACATTAAATCTAAATATTATAAATAAATATTATAATAT
1 TTTTTACAAACAAAACTATAATCTTAAACATTAAATCTAAATATTATAAATAAATATTATAATAT
27400052 ACAAATTATTATTACAAACTAAAAAGAACATACATTAAAACTATCATAATCTATCTCTAAAACTC
66 ACAAATTATTATTACAAACTAAAAAGAACATACATTAAAACTATCATAATCTATCTCTAAAACTC
27400117 CAACACAAATACAA
131 CAACACAAATACAA
27400131 TTTTTACAAACAAAACTATAATCTTAAACATTAAATCTAAA
1 TTTTTACAAACAAAACTATAATCTTAAACATTAAATCTAAA
27400172 AATAAACAAT
Statistics
Matches: 183, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
143 4 0.02
144 179 0.98
ACGTcount: A:0.53, C:0.15, G:0.01, T:0.32
Consensus pattern (144 bp):
TTTTTACAAACAAAACTATAATCTTAAACATTAAATCTAAATATTATAAATAAATATTATAATAT
ACAAATTATTATTACAAACTAAAAAGAACATACATTAAAACTATCATAATCTATCTCTAAAACTC
CAACACAAATACAA
Found at i:27415385 original size:16 final size:17
Alignment explanation
Indices: 27415364--27415396 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
27415354 GCTTAAGTCA
*
27415364 TGTGTT-AAAGGACTTG
1 TGTGTTGAAAGAACTTG
27415380 TGTGTTGAAAGAACTTG
1 TGTGTTGAAAGAACTTG
27415397 ATAAGTGCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.06, G:0.30, T:0.36
Consensus pattern (17 bp):
TGTGTTGAAAGAACTTG
Found at i:27420147 original size:19 final size:19
Alignment explanation
Indices: 27420123--27420185 Score: 108
Period size: 19 Copynumber: 3.3 Consensus size: 19
27420113 ATATCTGAAT
27420123 TGTGGAAGCATTCAAACTG
1 TGTGGAAGCATTCAAACTG
27420142 TGTGGAAGCATTCAAACTG
1 TGTGGAAGCATTCAAACTG
* *
27420161 TGTAGAAGCATTCAAACTA
1 TGTGGAAGCATTCAAACTG
27420180 TGTGGA
1 TGTGGA
27420186 TTTGCGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (19 bp):
TGTGGAAGCATTCAAACTG
Found at i:27421075 original size:27 final size:27
Alignment explanation
Indices: 27421045--27421133 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
27421035 TTTGCATTTA
27421045 AGGGTTCACACAAGTAGGCTCGCACCT
1 AGGGTTCACACAAGTAGGCTCGCACCT
*
27421072 AGGGTTCACACAAGTAGGCTCACACCT
1 AGGGTTCACACAAGTAGGCTCGCACCT
* * *
27421099 AGGGTTCACACAAGTAAGGGTTGCATCT
1 AGGGTTCACACAAGT-AGGCTCGCACCT
27421127 AGGGTTC
1 AGGGTTC
27421134 GTATGTACAT
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 41 0.73
28 15 0.27
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.21
Consensus pattern (27 bp):
AGGGTTCACACAAGTAGGCTCGCACCT
Found at i:27421275 original size:35 final size:34
Alignment explanation
Indices: 27421234--27421326 Score: 105
Period size: 35 Copynumber: 2.6 Consensus size: 34
27421224 GTTGATTCGA
**
27421234 ATAATTTGACTCGCATGTAGTATTAAAAGGCTGGC
1 ATAATTTGACTCGCATGTA-TATTAAAAGGCTCAC
* *
27421269 ATAATTTGACTCGCATATTATATTAAGAGGCTCAC
1 ATAATTTGACTCGCAT-GTATATTAAAAGGCTCAC
* *
27421304 ATAATTTGGCCCGCATGTCATAT
1 ATAATTTGACTCGCATGT-ATAT
27421327 CCTAGGGTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
34 1 0.02
35 46 0.94
36 2 0.04
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (34 bp):
ATAATTTGACTCGCATGTATATTAAAAGGCTCAC
Found at i:27422255 original size:36 final size:32
Alignment explanation
Indices: 27422189--27422260 Score: 83
Period size: 36 Copynumber: 2.1 Consensus size: 32
27422179 CATAAAATAA
*
27422189 AAATATTTTTAGAAAAATTAATTTTATGGTTTT
1 AAATATTTTTAGAAAAATAAATTTTATGG-TTT
27422222 AAATAATTTTTAGGTAAAAATAAATATTT-TGGTTT
1 AAAT-ATTTTTA-G-AAAAATAAAT-TTTATGGTTT
27422257 AAAT
1 AAAT
27422261 TGGAATTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
33 4 0.12
34 7 0.21
35 8 0.24
36 12 0.35
37 3 0.09
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (32 bp):
AAATATTTTTAGAAAAATAAATTTTATGGTTT
Found at i:27427324 original size:16 final size:16
Alignment explanation
Indices: 27427303--27427370 Score: 75
Period size: 16 Copynumber: 4.2 Consensus size: 16
27427293 TAAATTATTG
27427303 ATTACATCTCTATTCC
1 ATTACATCTCTATTCC
27427319 ATTACAGT-TCTATTCC
1 ATTACA-TCTCTATTCC
* * *
27427335 ATTACAGCTCTTTTCA
1 ATTACATCTCTATTCC
* *
27427351 ATTACAACCCTATTCC
1 ATTACATCTCTATTCC
27427367 ATTA
1 ATTA
27427371 TAGTGAACCA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
16 42 0.98
17 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTACATCTCTATTCC
Found at i:27430408 original size:5 final size:5
Alignment explanation
Indices: 27430398--27430430 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
27430388 AAGAGAGGAT
*
27430398 AAGGG AAGGG AAAGG AAGGG AAGGG AAGGG AAG
1 AAGGG AAGGG AAGGG AAGGG AAGGG AAGGG AAG
27430431 AGGGACGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (5 bp):
AAGGG
Found at i:27442001 original size:16 final size:18
Alignment explanation
Indices: 27441970--27442003 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
27441960 CCAATCAATA
27441970 CCACAACCCATTCATCAC
1 CCACAACCCATTCATCAC
27441988 CCAC-ACCC-TTCATCAC
1 CCACAACCCATTCATCAC
27442004 TACCATCACC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 4 0.25
18 4 0.25
ACGTcount: A:0.29, C:0.53, G:0.00, T:0.18
Consensus pattern (18 bp):
CCACAACCCATTCATCAC
Found at i:27443840 original size:111 final size:111
Alignment explanation
Indices: 27443719--27443940 Score: 333
Period size: 111 Copynumber: 2.0 Consensus size: 111
27443709 TGGTAAATTT
*
27443719 GTTTTTAAATAATTGCT-CCCCTTAATGAAAA-TCATTTTGAATTTAAGGCCAAAATAAAAAG-A
1 GTTTTCAAATAATTGCTCCCCCTTAAT-AAAAGTCATTTTGAATTTAAGGCCAAAA-AAAAAGTA
* *
27443781 TTGACATACAATTAACGTTCATTTTTACTTTAAGAAAAATGGTCACATA
64 -TGACATACAATTAACATTCATTTTAACTTTAAGAAAAATGGTCACATA
*
27443830 GTTTTCAAATAATTGCTCCCCCTTAATAAAAGTTATTTTGAATTTAAGGCCAAAAAAAAAGTATG
1 GTTTTCAAATAATTGCTCCCCCTTAATAAAAGTCATTTTGAATTTAAGGCCAAAAAAAAAGTATG
* * *
27443895 ACATACAGTTGACATTCATTTTAACTTTAAGGAAAATGGTCACATA
66 ACATACAATTAACATTCATTTTAACTTTAAGAAAAATGGTCACATA
27443941 ATTTGCATAA
Statistics
Matches: 101, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
111 69 0.68
112 32 0.32
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (111 bp):
GTTTTCAAATAATTGCTCCCCCTTAATAAAAGTCATTTTGAATTTAAGGCCAAAAAAAAAGTATG
ACATACAATTAACATTCATTTTAACTTTAAGAAAAATGGTCACATA
Found at i:27445536 original size:38 final size:38
Alignment explanation
Indices: 27445485--27445560 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
27445475 CTCGAGTTCT
*
27445485 TCGTCAACCAACTAGTCGCCACCCTAGCAGGATCTTCC
1 TCGTCAACCAACTAGTCGCCACCCTAGCAGGATATTCC
** * *
27445523 TCGTCAATTAACTAGTCGCTACTCTAGCAGGATATTCC
1 TCGTCAACCAACTAGTCGCCACCCTAGCAGGATATTCC
27445561 GATCTTCCAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (38 bp):
TCGTCAACCAACTAGTCGCCACCCTAGCAGGATATTCC
Found at i:27446934 original size:13 final size:13
Alignment explanation
Indices: 27446898--27446945 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
27446888 TCTACATTGC
27446898 TTTTGAAAAGTGT
1 TTTTGAAAAGTGT
* *
27446911 TGTGGAAAAGTGT
1 TTTTGAAAAGTGT
* *
27446924 TTTTGAGAAGTGC
1 TTTTGAAAAGTGT
27446937 TTTTGAAAA
1 TTTTGAAAA
27446946 ATTTGAGTGT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.27, T:0.40
Consensus pattern (13 bp):
TTTTGAAAAGTGT
Found at i:27447139 original size:28 final size:30
Alignment explanation
Indices: 27447107--27447167 Score: 83
Period size: 28 Copynumber: 2.1 Consensus size: 30
27447097 ATTATAACTT
*
27447107 ATTTTTAATATTT-TAA-T-ATATAATATTA
1 ATTTTAAATATTTCTAAGTAAT-TAATATTA
27447135 ATTTTAAATATTTCTAAGTAATTAATATTA
1 ATTTTAAATATTTCTAAGTAATTAATATTA
27447165 ATT
1 ATT
27447168 ATTTTTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 12 0.41
29 3 0.10
30 12 0.41
31 2 0.07
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (30 bp):
ATTTTAAATATTTCTAAGTAATTAATATTA
Found at i:27447163 original size:30 final size:28
Alignment explanation
Indices: 27447107--27447167 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 28
27447097 ATTATAACTT
*
27447107 ATTTTTAATATTTTAATATATAATATTA
1 ATTTTAAATATTTTAATATATAATATTA
27447135 ATTTTAAATATTTCTAAGTA-ATTAATATTA
1 ATTTTAAATATTT-TAA-TATA-TAATATTA
27447165 ATT
1 ATT
27447168 ATTTTTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 12 0.41
29 4 0.14
30 13 0.45
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (28 bp):
ATTTTAAATATTTTAATATATAATATTA
Found at i:27449065 original size:14 final size:14
Alignment explanation
Indices: 27449048--27449080 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
27449038 TATTAAATTG
27449048 TAGAACTAAAATGC
1 TAGAACTAAAATGC
27449062 TAGAACTAAAATGC
1 TAGAACTAAAATGC
*
27449076 CAGAA
1 TAGAA
27449081 ATTGTTCGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.18
Consensus pattern (14 bp):
TAGAACTAAAATGC
Found at i:27450220 original size:19 final size:20
Alignment explanation
Indices: 27450196--27450244 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 20
27450186 TTTTCTTACG
27450196 AGTATCGATATTTTATAAA-
1 AGTATCGATATTTTATAAAT
*
27450215 AGTATCGATATTTTTTAAAT
1 AGTATCGATATTTTATAAAT
*
27450235 GGTATCGATA
1 AGTATCGATA
27450245 CCAAATTGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.37, C:0.06, G:0.14, T:0.43
Consensus pattern (20 bp):
AGTATCGATATTTTATAAAT
Found at i:27454967 original size:8 final size:8
Alignment explanation
Indices: 27454954--27454978 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
27454944 TATACTAAAC
27454954 AATAAAAT
1 AATAAAAT
27454962 AATAAAAT
1 AATAAAAT
27454970 AATAAAAT
1 AATAAAAT
27454978 A
1 A
27454979 TTATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:27458072 original size:21 final size:21
Alignment explanation
Indices: 27458048--27458087 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
27458038 TGAAGCAATT
* *
27458048 TTGACTTGTTTAAATGATATC
1 TTGACTTGATAAAATGATATC
27458069 TTGACTTGATAAAATGATA
1 TTGACTTGATAAAATGATA
27458088 AAAGACCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (21 bp):
TTGACTTGATAAAATGATATC
Found at i:27463969 original size:27 final size:28
Alignment explanation
Indices: 27463881--27464123 Score: 253
Period size: 28 Copynumber: 8.8 Consensus size: 28
27463871 AACACGTCAG
*
27463881 GAAAGAATAAGCCTTTGTGGTGAACTAT
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
* *
27463909 GAAAGAATAAGCCTTTATGGCAAACTAT
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
*
27463937 GAAAGAATAAGCCTTTG-GGAGAACTAT
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
*
27463964 GAAAGAATAAGCCTTTGTGGTGAA-TAAT
1 GAAAGAATAAGCCTTTGTGGCGAACT-AT
*
27463992 GAAAGAATAAGCCCTTGT-GCGAA-TAAT
1 GAAAGAATAAGCCTTTGTGGCGAACT-AT
* *
27464019 AAAAGAATAAGCCTTTGT-GCGAACAAT
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
* * *
27464046 GAAAGACTAAGCCCTTGCGGCGAACTAT
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
** * * *
27464074 CTAAGACTAAGCCCTTGTGGTGAACTAT
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
* * * *
27464102 CAAAGACTAAGCCCTTATGGCG
1 GAAAGAATAAGCCTTTGTGGCG
27464124 GACTCCGTAT
Statistics
Matches: 187, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
27 71 0.38
28 116 0.62
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (28 bp):
GAAAGAATAAGCCTTTGTGGCGAACTAT
Found at i:27463973 original size:55 final size:56
Alignment explanation
Indices: 27463881--27464117 Score: 250
Period size: 55 Copynumber: 4.3 Consensus size: 56
27463871 AACACGTCAG
* * * * *
27463881 GAAAGAATAAGCCTTTGTGGTGAACTATGAAAGAATAAGCCTTTATGGCAAACTAT
1 GAAAGAATAAGCCCTTGCGGCGAACTATGAAAGAATAAGCCTTTGTGGCGAACTAT
* * *
27463937 GAAAGAATAAGCCTTTG-GGAGAACTATGAAAGAATAAGCCTTTGTGGTGAA-TAAT
1 GAAAGAATAAGCCCTTGCGGCGAACTATGAAAGAATAAGCCTTTGTGGCGAACT-AT
* * *
27463992 GAAAGAATAAGCCCTTG-TGCGAA-TAATAAAAGAATAAGCCTTTGT-GCGAACAAT
1 GAAAGAATAAGCCCTTGCGGCGAACT-ATGAAAGAATAAGCCTTTGTGGCGAACTAT
* ** * * *
27464046 GAAAGACTAAGCCCTTGCGGCGAACTATCTAAGACTAAGCCCTTGTGGTGAACTAT
1 GAAAGAATAAGCCCTTGCGGCGAACTATGAAAGAATAAGCCTTTGTGGCGAACTAT
* *
27464102 CAAAGACTAAGCCCTT
1 GAAAGAATAAGCCCTT
27464118 ATGGCGGACT
Statistics
Matches: 156, Mismatches: 19, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
54 24 0.15
55 92 0.59
56 40 0.26
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (56 bp):
GAAAGAATAAGCCCTTGCGGCGAACTATGAAAGAATAAGCCTTTGTGGCGAACTAT
Found at i:27464085 original size:82 final size:82
Alignment explanation
Indices: 27463881--27464092 Score: 205
Period size: 82 Copynumber: 2.6 Consensus size: 82
27463871 AACACGTCAG
* * * * * * * *
27463881 GAAAGAATAAGCCTTTGTGGTGAACT-ATGAAAGAATAAGCCTTTATGGCAAACT-ATGAAAGAA
1 GAAAGAATAAGCCCTTGCGGCGAA-TAATCAAAGAATAAGCCCTTGT-GCGAA-TAATAAAAGAA
*
27463944 TAAGCCTTTGGGAGAACTAT
63 TAAGCCTTTGGGAGAACAAT
* * * *
27463964 GAAAGAATAAGCCTTTGTGGTGAATAATGAAAGAATAAGCCCTTGTGCGAATAATAAAAGAATAA
1 GAAAGAATAAGCCCTTGCGGCGAATAATCAAAGAATAAGCCCTTGTGCGAATAATAAAAGAATAA
* *
27464029 GCCTTTGTGCGAACAAT
66 GCCTTTGGGAGAACAAT
* * *
27464046 GAAAGACTAAGCCCTTGCGGCGAACT-ATCTAAGACTAAGCCCTTGTG
1 GAAAGAATAAGCCCTTGCGGCGAA-TAATCAAAGAATAAGCCCTTGTG
27464093 GTGAACTATC
Statistics
Matches: 112, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
81 1 0.01
82 68 0.61
83 43 0.38
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (82 bp):
GAAAGAATAAGCCCTTGCGGCGAATAATCAAAGAATAAGCCCTTGTGCGAATAATAAAAGAATAA
GCCTTTGGGAGAACAAT
Found at i:27475641 original size:16 final size:16
Alignment explanation
Indices: 27475620--27475650 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27475610 GTTTCACTTT
27475620 GACTGCATAGCATTTA
1 GACTGCATAGCATTTA
*
27475636 GACTGCATGGCATTT
1 GACTGCATAGCATTT
27475651 CATTATAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (16 bp):
GACTGCATAGCATTTA
Found at i:27477392 original size:28 final size:28
Alignment explanation
Indices: 27477311--27477392 Score: 81
Period size: 28 Copynumber: 3.1 Consensus size: 28
27477301 AATTTATACT
27477311 TATAATTCAACTCATGAACTTATATATA
1 TATAATTCAACTCATGAACTTATATATA
*
27477339 TAT-ATTC-A-TACA-CAA--TA-ATACT-
1 TATAATTCAACT-CATGAACTTATATA-TA
27477361 TATAATTCAACTCATGAACTTATATATA
1 TATAATTCAACTCATGAACTTATATATA
27477389 TATA
1 TATA
27477393 TATATTCATA
Statistics
Matches: 42, Mismatches: 2, Indels: 20
0.66 0.03 0.31
Matches are distributed among these distances:
22 6 0.14
23 7 0.17
24 3 0.07
25 6 0.14
26 3 0.07
27 7 0.17
28 10 0.24
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.39
Consensus pattern (28 bp):
TATAATTCAACTCATGAACTTATATATA
Found at i:27488890 original size:6 final size:7
Alignment explanation
Indices: 27488867--27488907 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
27488857 AAAAGTGATG
27488867 TGAAAAA
1 TGAAAAA
27488874 TGAAAAGA
1 TGAAAA-A
27488882 TG-AAAA
1 TGAAAAA
27488888 TGAAAAA
1 TGAAAAA
27488895 TGAAAAA
1 TGAAAAA
*
27488902 AGAAAA
1 TGAAAA
27488908 TGGAGAGGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 3 0.10
7 25 0.81
8 3 0.10
ACGTcount: A:0.71, C:0.00, G:0.17, T:0.12
Consensus pattern (7 bp):
TGAAAAA
Found at i:27488891 original size:21 final size:20
Alignment explanation
Indices: 27488867--27488909 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
27488857 AAAAGTGATG
*
27488867 TGAAAAATGAAAAGATGAAAA
1 TGAAAAATGAAAA-AAGAAAA
27488888 TGAAAAATGAAAAAAGAAAA
1 TGAAAAATGAAAAAAGAAAA
27488908 TG
1 TG
27488910 GAGAGGCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14
Consensus pattern (20 bp):
TGAAAAATGAAAAAAGAAAA
Found at i:27490419 original size:132 final size:132
Alignment explanation
Indices: 27490193--27490760 Score: 1012
Period size: 132 Copynumber: 4.3 Consensus size: 132
27490183 TCCCTCGGTT
* *
27490193 GTAGTGGAGCAGATCAAAGATGGC-GAATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAG
1 GTAGTGGAGCAGATCAAAGATGACAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAG
27490257 CCAATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAA
65 CCAATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAA
27490322 GCA
130 GCA
27490325 GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
27490390 CAATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAG
66 CAATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAG
27490455 CA
131 CA
27490457 GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
27490522 CAATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAG
66 CAATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAG
27490587 CA
131 CA
*
27490589 GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTATATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
* * * * *
27490654 CAGTAATTCTACTTCCCTAGGCAGTAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAAG
66 CAATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAG
27490719 CA
131 CA
* * * *
27490721 GTAGCGGAGCAAATAAAAGATGGCAGATTTTACCTCCCTG
1 GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTG
27490761 GGCAGCAGCG
Statistics
Matches: 423, Mismatches: 12, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
132 422 1.00
133 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (132 bp):
GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
CAATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAG
CA
Found at i:27490722 original size:44 final size:44
Alignment explanation
Indices: 27490667--27490812 Score: 148
Period size: 44 Copynumber: 3.3 Consensus size: 44
27490657 TAATTCTACT
* *
27490667 TCCCTAGGCAGTAGCGGAATAGATTGAAGATTTCAAATCTTGTC
1 TCCCTAAGCAGTAGCGGAATAGATTGAAGATTTCAGATCTTGTC
** * ** ** * **
27490711 TCCCTAAGCAGTAGCGGAGCAAATAAAAGATGGCAGATTTTACC
1 TCCCTAAGCAGTAGCGGAATAGATTGAAGATTTCAGATCTTGTC
** * *
27490755 TCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTC
1 TCCCTAAGCAGTAGCGGAATAGATTGAAGATTTCAGATCTTGTC
27490799 TCCCTAAGCAGTAG
1 TCCCTAAGCAGTAG
27490813 TGGAGCAGAT
Statistics
Matches: 73, Mismatches: 29, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
44 73 1.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (44 bp):
TCCCTAAGCAGTAGCGGAATAGATTGAAGATTTCAGATCTTGTC
Found at i:27490778 original size:88 final size:88
Alignment explanation
Indices: 27490658--27490848 Score: 276
Period size: 88 Copynumber: 2.2 Consensus size: 88
27490648 TGAAGCCAGT
* * * * *
27490658 AATTCTACTTCCCTAGGCAGTAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAAGCAGT
1 AATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAAATCTTGTCTCCCTAAGCAGT
27490723 AGCGGAGCAAATAAAAGATGGCAG
66 AGCGGAGCAAATAAAAGATGG-AG
*
27490747 -ATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
1 AATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAAATCTTGTCTCCCTAAGCAGT
* * * *
27490811 AGTGGAGCAGATCAAAGATGGTG
66 AGCGGAGCAAATAAAAGATGGAG
27490834 AATTTTACCTCCCTG
1 AATTTTACCTCCCTG
27490849 TGGTTACAGT
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
87 1 0.01
88 90 0.99
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (88 bp):
AATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAAATCTTGTCTCCCTAAGCAGT
AGCGGAGCAAATAAAAGATGGAG
Found at i:27490829 original size:132 final size:131
Alignment explanation
Indices: 27490726--27491375 Score: 663
Period size: 132 Copynumber: 5.0 Consensus size: 131
27490716 AAGCAGTAGC
* * * * * *
27490726 GGAGCAAATAAAAGATGGCAGATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAG
1 GGAGCAAATAAAAGACGACAGATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAG
27490791 ATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTAC
66 ATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTT--
27490856 AGT
129 AGT
* * ** * *
27490859 GGAGTACATTGAAG-C--CAGTAATTCTACTTCCTTGGGCAGTAGTGGAATAGATTGAAGATTTC
1 GGAGCAAATAAAAGACGACAG--ATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTC
27490921 AGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTT
64 AGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTT
27490986 ACAGT
129 --AGT
* * ** * * * * * *
27490991 GGAGTACATTGAAGCCAATA-ATTCTACTTCCCTGGGTAGTAGCGGAATAGATTGAAGATTTCAG
1 GGAGCAAATAAAAGACGACAGATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAG
27491055 ATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTAC
66 ATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTT--
27491120 AGT
129 AGT
* * * ** *
27491123 GAAGTACATTGAAG-C--CAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAGGATTTC
1 GGAGCAAATAAAAGACGACAG--ATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTC
* *
27491185 AGATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGAGGTT
64 AGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTT
27491250 GCAGT
129 --AGT
* * ** *
27491255 GGAGTACATTGAAG-C--CAGTAATTCTA-TATCCCTGGGCAGCAGTGGAATAGATTAAAGA-TT
1 GGAGCAAATAAAAGACGACAG--ATTCTACT-TCCCTGGGCAGCAGTGGAATAGATTGAAGATTT
* * * * *
27491315 ---A-C--ATATCCCTAAGCAGTAGTGGAGCAGATCAATGATGG-CAGATTTTACCTCCCTGAGG
63 CAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGA-ATTTTACCTCCCTGTGG
27491373 TTA
127 TTA
27491376 CAGTGGAGTA
Statistics
Matches: 475, Mismatches: 32, Indels: 30
0.88 0.06 0.06
Matches are distributed among these distances:
123 1 0.00
124 1 0.00
125 51 0.11
127 1 0.00
128 1 0.00
129 1 0.00
130 3 0.01
131 4 0.01
132 400 0.84
133 11 0.02
135 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (131 bp):
GGAGCAAATAAAAGACGACAGATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAG
ATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTAG
T
Found at i:27490841 original size:220 final size:220
Alignment explanation
Indices: 27490526--27490980 Score: 752
Period size: 220 Copynumber: 2.1 Consensus size: 220
27490516 TGAAGCCAAT
* * *
27490526 AATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAGCAGT
1 AATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
*
27490591 AGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTATATTGAAGCCA
66 AGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
27490656 GTAATTCTACTTCCCTAGGCAGTAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAAGCA
131 GTAATTCTACTTCCCTAGGCAGTAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAAGCA
27490721 GTAGCGGAGCAAATAAAAGATGGCAG
196 GTAGCGGAGCAAATAAAAGATGG-AG
27490747 -ATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
1 AATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
**
27490811 AGTGGAGCAGATCAAAGATG-GTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
66 AGTGGAGCAGATCAAAGATGACAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
* * * *
27490875 AGTAATTCTACTTCCTTGGGCAGTAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC
130 AGTAATTCTACTTCCCTAGGCAGTAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAAGC
* * * *
27490940 AGTAGTGGAGCAGATCAAAGATGGTG
195 AGTAGCGGAGCAAATAAAAGATGGAG
27490966 AATTTTACCTCCCTG
1 AATTTTACCTCCCTG
27490981 TGGTTACAGT
Statistics
Matches: 218, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
219 2 0.01
220 216 0.99
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (220 bp):
AATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
AGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTAGGCAGTAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAAGCA
GTAGCGGAGCAAATAAAAGATGGAG
Found at i:27490944 original size:264 final size:263
Alignment explanation
Indices: 27490667--27491399 Score: 799
Period size: 264 Copynumber: 2.8 Consensus size: 263
27490657 TAATTCTACT
* * ** * **
27490667 TCCCTAGGCAGTAGCGGAATAGATTGAAGAT-TTCAAATCTTGTCTCCCTAAGCAG-T-AGCGGA
1 TCCCTAAGCAGTAGCGGAACAGATCAAAGATGGT-AAATCTTACCTCCCT--GCAGTTAAGCGGA
*** *
27490729 GCAAATAAAAGATGGCAGATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATC
63 GCAAATAAAAGACAACA-ATTCTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATC
27490794 TTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGT
127 TTGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGT
* * *
27490859 GGAGTACATTGAAGCCAGTAATTCTACTTCCTTGGGCAGTAGTGGAATAGATTGAAGATTTCAGA
192 GAAGTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGA
27490924 TCTTGTC
257 TCTTGTC
* * * * ** * *
27490931 TCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGGAGT
1 TCCCTAAGCAGTAGCGGAACAGATCAAAGATGGTAAATCTTACCTCCCTGCAGTTA-AGCGGAGC
* ** * * * * * *
27490996 ACATTGAAGCCAATAATTCTACTTCCCTGGGTAGTAGCGGAATAGATTGAAGATTTCAGATCTTG
65 AAATAAAAGACAACAATTCTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTG
27491061 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGAA
130 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGAA
*
27491126 GTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAGGATTTCAGATCT
195 GTACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCT
27491191 TGTC
260 TGTC
* * * * * * *
27491195 TCCCCAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTG-AGGTTGCAGTGGAG
1 TCCCTAAGCAGTAGCGGAACAGATCAAAGATGGTAAATCTTACCTCCCTGCA-GTT-AAGCGGAG
* * ** * ** ** *
27491259 TACATTGAAGCCAGTAATTCTATATCCCTGGGCAGCAGTGGAATAGATT-AAAGA-TT---A-C-
64 CAAATAAAAGACAACAATTCTACCTCCCTGGGCAGCAGCGGAATAGATTGAAA-ATTTCAGATCT
* * * * *
27491317 -ATATCCCTAAGCAGTAGTGGAGCAGATCAATGATGG-CAGATTTTACCTCCCTGAGGTTACAGT
128 TGTCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGA-ATTTTACCTCCCTGTGGTTACAGT
*
27491380 GGAGTACATTGAAGCCAGTA
192 GAAGTACATTGAAGCCAGTA
27491400 TTCCTATCTT
Statistics
Matches: 413, Mismatches: 48, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
256 1 0.00
257 75 0.18
259 1 0.00
260 1 0.00
262 2 0.00
263 5 0.01
264 314 0.76
265 14 0.03
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (263 bp):
TCCCTAAGCAGTAGCGGAACAGATCAAAGATGGTAAATCTTACCTCCCTGCAGTTAAGCGGAGCA
AATAAAAGACAACAATTCTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGT
CTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAATTTTACCTCCCTGTGGTTACAGTGAAG
TACATTGAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTT
GTC
Found at i:27490973 original size:352 final size:352
Alignment explanation
Indices: 27490394--27491112 Score: 1201
Period size: 352 Copynumber: 2.0 Consensus size: 352
27490384 TGAAGCCAAT
* * *
27490394 AATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAGCAGT
1 AATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
27490459 AGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
66 AGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
*
27490524 ATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAGCA
131 ATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
*
27490589 GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTATATTGAAGC
196 GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
*
27490654 CAGTAATTCTACTTCCCTAGGCAGTAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAAG
261 CAATAATTCTACTTCCCTAGGCAGTAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAAG
27490719 CAGTAGCGGAGCAAATAAAAGATGGCAG
326 CAGTAGCGGAGCAAATAAAAGATGG-AG
27490747 -ATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
1 AATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
**
27490811 AGTGGAGCAGATCAAAGATG-GTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
66 AGTGGAGCAGATCAAAGATGACAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
* * * *
27490875 AGTAATTCTACTTCCTTGGGCAGTAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC
130 AATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC
**
27490940 AGTAGTGGAGCAGATCAAAGATG-GTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
195 AGTAGTGGAGCAGATCAAAGATGACAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
* * *
27491004 GCCAATAATTCTACTTCCCTGGGTAGTAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTA
259 GCCAATAATTCTACTTCCCTAGGCAGTAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTA
* * * *
27491069 AGCAGTAGTGGAGCAGATCAAAGATGGTG
324 AGCAGTAGCGGAGCAAATAAAAGATGGAG
27491098 AATTTTACCTCCCTG
1 AATTTTACCTCCCTG
27491113 TGGTTACAGT
Statistics
Matches: 342, Mismatches: 21, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
351 3 0.01
352 339 0.99
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (352 bp):
AATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
AGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
ATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
CAATAATTCTACTTCCCTAGGCAGTAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTAAG
CAGTAGCGGAGCAAATAAAAGATGGAG
Found at i:27491185 original size:484 final size:484
Alignment explanation
Indices: 27490262--27491244 Score: 1641
Period size: 484 Copynumber: 2.0 Consensus size: 484
27490252 TGAAGCCAAT
* * *
27490262 AATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAGCAGT
1 AATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
27490327 AGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
66 AGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
*
27490392 ATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAGCA
131 ATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
27490457 GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
196 GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
*
27490522 CAATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAG
261 CAATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
* *
27490587 CAGTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTATATTGAA
326 CAGTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGAAGTACATTGAA
* *
27490652 GCCAGTAATTCTACTTCCCTAGGCAGTAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCTA
391 GCCAGTAATTCTACTTCCCTAGGCAGCAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCCA
27490717 AGCAGTAGCGGAGCAAATAAAAGATGGCAG
456 AGCAGTAGCGGAGCAAATAAAAGATGG-AG
27490747 -ATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
1 AATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
**
27490811 AGTGGAGCAGATCAAAGATG-GTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
66 AGTGGAGCAGATCAAAGATGACAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCC
* * * *
27490875 AGTAATTCTACTTCCTTGGGCAGTAGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC
130 AATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGC
**
27490940 AGTAGTGGAGCAGATCAAAGATG-GTGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
195 AGTAGTGGAGCAGATCAAAGATGACAG-ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
* *
27491004 GCCAATAATTCTACTTCCCTGGGTAGTAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTA
259 GCCAATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTA
**
27491069 AGCAGTAGTGGAGCAGATCAAAGATG-GTGAATTTTACCTCCCTGTGGTTACAGTGAAGTACATT
324 AGCAGTAGTGGAGCAGATCAAAGATGACAG-ATTTTACCTCCCTGTGGTTACAGTGAAGTACATT
* * * *
27491133 GAAGCCAGTAATTCTACTTCCCTGGGCAGCAGTGGAATAGATTGAGGATTTCAGATCTTGTCTCC
388 GAAGCCAGTAATTCTACTTCCCTAGGCAGCAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCC
* * * *
27491198 CCAAGCAGTAGTGGAGCAGATCAAAGATGGTG
453 CCAAGCAGTAGCGGAGCAAATAAAAGATGGAG
27491230 AATTTTACCTCCCTG
1 AATTTTACCTCCCTG
27491245 AGGTTGCAGT
Statistics
Matches: 465, Mismatches: 29, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
483 4 0.01
484 461 0.99
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (484 bp):
AATTTTACCTCCCTGGGCAGCAGCGGAATAGATTGAAAATTTCAGATCTTGTCTCCCTAAGCAGT
AGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA
ATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAGCA
GTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
CAATAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
CAGTAGTGGAGCAGATCAAAGATGACAGATTTTACCTCCCTGTGGTTACAGTGAAGTACATTGAA
GCCAGTAATTCTACTTCCCTAGGCAGCAGCGGAATAGATTGAAGATTTCAAATCTTGTCTCCCCA
AGCAGTAGCGGAGCAAATAAAAGATGGAG
Found at i:27492274 original size:12 final size:11
Alignment explanation
Indices: 27492255--27492294 Score: 62
Period size: 12 Copynumber: 3.5 Consensus size: 11
27492245 ATCGAGACTA
27492255 TTTTTTTATTT
1 TTTTTTTATTT
27492266 TTCTTTTTATTT
1 TT-TTTTTATTT
27492278 TATTTTTTATTT
1 T-TTTTTTATTT
27492290 TTTTT
1 TTTTT
27492295 ATTTATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 6 0.22
12 20 0.74
13 1 0.04
ACGTcount: A:0.10, C:0.03, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTTTTTATTT
Found at i:27492280 original size:17 final size:16
Alignment explanation
Indices: 27492255--27492298 Score: 63
Period size: 17 Copynumber: 2.7 Consensus size: 16
27492245 ATCGAGACTA
27492255 TTTTTTTATTTTTCT-T
1 TTTTTTTATTTTT-TAT
27492271 TTTATTTTATTTTTTAT
1 TTT-TTTTATTTTTTAT
27492288 TTTTTTTATTT
1 TTTTTTTATTT
27492299 ATAATAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 12 0.46
17 14 0.54
ACGTcount: A:0.11, C:0.02, G:0.00, T:0.86
Consensus pattern (16 bp):
TTTTTTTATTTTTTAT
Found at i:27493019 original size:24 final size:24
Alignment explanation
Indices: 27492948--27493027 Score: 90
Period size: 26 Copynumber: 3.3 Consensus size: 24
27492938 TTTTACATAA
* * *
27492948 TATATATACATTTTTTTCATATAG
1 TATATATGCATATTTTTAATATAG
* *
27492972 TACATACGCATATTTTTTATATATAG
1 TATATATGCATA-TTTTTA-ATATAG
27492998 TATATATGCATATTTTTAATATA-
1 TATATATGCATATTTTTAATATAG
27493021 TATATAT
1 TATATAT
27493028 TAAGCTTTTA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
23 7 0.15
24 13 0.28
25 11 0.23
26 16 0.34
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.51
Consensus pattern (24 bp):
TATATATGCATATTTTTAATATAG
Found at i:27496737 original size:33 final size:33
Alignment explanation
Indices: 27496695--27496759 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
27496685 GGTTGAGAAG
*
27496695 ATTTGATCCAAGTTATGTAATTGGGATGCGAAT
1 ATTTGATCCAAATTATGTAATTGGGATGCGAAT
27496728 ATTTGATCCAAATTATGTAATTGGGATGCGAA
1 ATTTGATCCAAATTATGTAATTGGGATGCGAA
27496760 ACAGCTCTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.35
Consensus pattern (33 bp):
ATTTGATCCAAATTATGTAATTGGGATGCGAAT
Found at i:27498241 original size:15 final size:15
Alignment explanation
Indices: 27498211--27498256 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
27498201 ATAATGTAAA
27498211 TTCAATACTTGATTTT
1 TTCAATACTT-ATTTT
*
27498227 TT-AGTACTTATTTT
1 TTCAATACTTATTTT
*
27498241 TTCAATGCTTATTTT
1 TTCAATACTTATTTT
27498256 T
1 T
27498257 CATCATTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
14 7 0.27
15 17 0.65
16 2 0.08
ACGTcount: A:0.22, C:0.11, G:0.07, T:0.61
Consensus pattern (15 bp):
TTCAATACTTATTTT
Found at i:27498455 original size:18 final size:18
Alignment explanation
Indices: 27498434--27498478 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
27498424 AAATTCAAAC
*
27498434 TAACAATAATCTAA-ATT
1 TAACAATAAACTAACATT
27498451 ATAACAATAAACTAACATT
1 -TAACAATAAACTAACATT
27498470 TAA-AATAAA
1 TAACAATAAA
27498479 AAATTTCCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 6 0.24
18 16 0.64
19 3 0.12
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.29
Consensus pattern (18 bp):
TAACAATAAACTAACATT
Found at i:27498895 original size:19 final size:19
Alignment explanation
Indices: 27498871--27498911 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
27498861 GAGAAGCTGT
27498871 TGGAAGAATGAAAAGAATG
1 TGGAAGAATGAAAAGAATG
*
27498890 TGGAAGAATGGAAAGAATG
1 TGGAAGAATGAAAAGAATG
27498909 TGG
1 TGG
27498912 CTTTATATCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.46, C:0.00, G:0.37, T:0.17
Consensus pattern (19 bp):
TGGAAGAATGAAAAGAATG
Found at i:27499259 original size:32 final size:29
Alignment explanation
Indices: 27499212--27499282 Score: 88
Period size: 32 Copynumber: 2.3 Consensus size: 29
27499202 TGCCAACTTC
27499212 AAAAGTTATACTTAAATTCATTAAATTATTA
1 AAAAGTTATACTTAAATT-ATTAAATT-TTA
* * *
27499243 ATAAATTTATATTTAAATTATTTAATTTTA
1 A-AAAGTTATACTTAAATTATTAAATTTTA
27499273 AAAAGTTATA
1 AAAAGTTATA
27499283 AAATAATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
29 8 0.23
30 4 0.11
31 8 0.23
32 15 0.43
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (29 bp):
AAAAGTTATACTTAAATTATTAAATTTTA
Found at i:27505322 original size:42 final size:41
Alignment explanation
Indices: 27505256--27505349 Score: 134
Period size: 42 Copynumber: 2.3 Consensus size: 41
27505246 ATATGGCATC
* *
27505256 GGCATTGGTATGAATTTCATGTAAGACCATATCTGGGATAT
1 GGCATTGATATGAATTTCATGTAAGACCATATCTGGGACAT
* * *
27505297 GGCGTTGATATGAGATTTCGTGTAAGACCATGTCTGGGACAT
1 GGCATTGATATGA-ATTTCATGTAAGACCATATCTGGGACAT
27505339 GGCATTGATAT
1 GGCATTGATAT
27505350 AAGGTCCCGT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
41 11 0.24
42 35 0.76
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (41 bp):
GGCATTGATATGAATTTCATGTAAGACCATATCTGGGACAT
Found at i:27505365 original size:42 final size:42
Alignment explanation
Indices: 27505277--27505384 Score: 126
Period size: 42 Copynumber: 2.6 Consensus size: 42
27505267 GAATTTCATG
* * * * ** *
27505277 TAAGACCATATCTGGGATATGGCGTTGATATGAGATTTCGTG
1 TAAGACCATGTCTGGGACATGGCATTGATATAAGATCCCGTA
*
27505319 TAAGACCATGTCTGGGACATGGCATTGATATAAGGTCCCGTA
1 TAAGACCATGTCTGGGACATGGCATTGATATAAGATCCCGTA
* *
27505361 TAAGACCATGTATAGGACATGGCA
1 TAAGACCATGTCTGGGACATGGCA
27505385 ACGGTATCGA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATGGCATTGATATAAGATCCCGTA
Found at i:27507123 original size:55 final size:54
Alignment explanation
Indices: 27507035--27507289 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
27507025 ATTAGGGTTT
**
27507035 AAGGATACCATGTAAGACCATGACAAGGGATGGCAATTGGTAAAGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAATTGGT-AAGTTTCTAAGGC
* * * * *
27507090 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * *
27507145 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGACAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
27507198 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-GGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAATTGGTAAGTTTCTAAGGC
* *
27507247 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGACAAGACATGGCAATTGGTAAG
27507290 GTACCCGCGT
Statistics
Matches: 169, Mismatches: 24, Indels: 20
0.79 0.11 0.09
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 42 0.25
54 10 0.06
55 67 0.40
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGACAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:27507241 original size:108 final size:110
Alignment explanation
Indices: 27507042--27507242 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
27507032 TTTAAGGATA
* *
27507042 CCATGTAAGACCATGACAAGGGATGGCAATTGGTAAAGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGACAAGGCATGGCAATTGGTAAAGTTTCTAAGGCAAGGAAACCATGTAAGA
**
27507107 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAAGGATAAGTTACTATAAGGCAAAGGTC
* * *
27507152 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGT-GAG-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGACAAGGCATGGCAATTGGTAAAGTTTC-TAAGGCAAGGAAACCATGTAAG
*
27507214 ACCATGTCAAGACATGGCAAGGGTAAGTT
65 ACCATGTCAAGACATGGCAAGGATAAGTT
27507243 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 6 0.07
110 25 0.30
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGACAAGGCATGGCAATTGGTAAAGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAAGGATAAGTTACTATAAGGCAAAGGTC
Found at i:27514307 original size:49 final size:47
Alignment explanation
Indices: 27514247--27514605 Score: 540
Period size: 47 Copynumber: 7.6 Consensus size: 47
27514237 GATAATTGTG
* *
27514247 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
27514294 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
27514341 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
27514390 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
27514439 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
27514486 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
27514533 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
* *
27514580 ATGTGAAAGTATATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
27514606 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 18, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
46 2 0.01
47 192 0.66
48 2 0.01
49 94 0.32
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:27519002 original size:55 final size:53
Alignment explanation
Indices: 27518902--27519102 Score: 179
Period size: 55 Copynumber: 3.7 Consensus size: 53
27518892 TTAAGGATAC
* ** * * *
27518902 CATGTAAGACCATGCCAAGGGATGGAGATTGATAAGGTTTCTAAGGCAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGG-CATTGATAA-GTCTATAAGGCAAGGAAAT
***
27518957 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTAACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATAAGT--CTATAAGGC-AAGGAAAT
* ** * * *
27519012 CATGTAAGACCATGCCAAGGGATGGAGATTGATAAGGTTTCTAAGGCAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGG-CATTGATAA-GTCTATAAGGCAAGGAAAT
* *
27519067 CATGTAAGACCATGTCAAGACATGGCAATGGTAAGT
1 CATGTAAGACCATGTCAAGACATGGCATTGATAAGT
27519103 TTCAAAAGGA
Statistics
Matches: 116, Mismatches: 24, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
53 4 0.03
54 18 0.16
55 80 0.69
56 12 0.10
57 2 0.02
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATAAGTCTATAAGGCAAGGAAAT
Found at i:27519102 original size:110 final size:110
Alignment explanation
Indices: 27518901--27519102 Score: 386
Period size: 110 Copynumber: 1.8 Consensus size: 110
27518891 TTTAAGGATA
27518901 CCATGTAAGACCATGCCAAGGGATGGAGATTGATAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGGATGGAGATTGATAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
*
27518966 CCATGTCAAGACATGGCATTGATAAGTAACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTAACTATAAGGCAAAGGTC
27519011 CCATGTAAGACCATGCCAAGGGATGGAGATTGATAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGGATGGAGATTGATAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
*
27519076 CCATGTCAAGACATGGCAATGGTAAGT
66 CCATGTCAAGACATGGCAATGATAAGT
27519103 TTCAAAAGGA
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 90 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGGATGGAGATTGATAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTAACTATAAGGCAAAGGTC
Found at i:27519363 original size:16 final size:16
Alignment explanation
Indices: 27519342--27519372 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27519332 ATAAATTTGA
27519342 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
27519358 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
27519373 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:27522735 original size:38 final size:38
Alignment explanation
Indices: 27522679--27522755 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
27522669 TTGATGTATC
* *
27522679 TCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATA
1 TCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTATA
*
27522717 TCCGGGTTAAATCTCGCAGGCCTAGTGCTGGTATTATA
1 TCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTATA
27522755 T
1 T
27522756 TCAGGCCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.32
Consensus pattern (38 bp):
TCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTATA
Found at i:27522811 original size:45 final size:45
Alignment explanation
Indices: 27522753--27523017 Score: 415
Period size: 45 Copynumber: 5.9 Consensus size: 45
27522743 GCTGGTATTA
*
27522753 TATTCAGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
*
27522798 TATTCGGGGCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
* *
27522843 TATTCGGGCCTTTGAGCCTAGTAGGCTATTATGCCGGTGAGACAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
* * *
27522888 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
* * *
27522933 TATTCGGGCCTTTGAGTCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
*
27522978 TATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATTATGCCGGTGA
27523018 AATGATAATC
Statistics
Matches: 205, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
44 4 0.02
45 201 0.98
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
Found at i:27522995 original size:135 final size:135
Alignment explanation
Indices: 27522753--27523060 Score: 428
Period size: 135 Copynumber: 2.3 Consensus size: 135
27522743 GCTGGTATTA
* * *
27522753 TATTCAGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACACTATTCGGGGCTTTGAGCCTA
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAACACTATTCGGGCCTTTGAGCCTA
* * *
27522818 GCAGGCTATTATGCCGGTGAGACACTATTCGGGCCTTTGAGCCTAGTAGGCTATTATGCCGGTGA
66 GCAGGCTATAATGCCGGTGAGACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
27522883 GACAT
131 GACAT
* * *
27522888 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGAGTCTA
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAACACTATTCGGGCCTTTGAGCCTA
*
27522953 GCAGGCTATAATGCCGGTGAGATACTATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGGTG
66 GCAGGCTATAATGCCGGTGAGACACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTG
27523017 A-A-AT
130 AGACAT
* * **
27523021 GATAATCAGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 --TATTCAGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGA
27523061 TTTGAGAAAA
Statistics
Matches: 155, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
133 13 0.08
134 19 0.12
135 123 0.79
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (135 bp):
TATTCAGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAACACTATTCGGGCCTTTGAGCCTA
GCAGGCTATAATGCCGGTGAGACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
GACAT
Found at i:27523020 original size:90 final size:89
Alignment explanation
Indices: 27522753--27523060 Score: 424
Period size: 90 Copynumber: 3.4 Consensus size: 89
27522743 GCTGGTATTA
*
27522753 TATTCAGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACACTATTCGGGGCTTTGAGCCTA
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACACTATTC-GGGCTTTGAGCCTA
* * *
27522818 GCAGGCTATTATGCCGGTGAGACAC
65 GCAGGCTATAATGCCGGTGAAATAC
* * * *
27522843 TATTCGGGCCTTTGAGCCTAGTAGGCTATTATGCCGGTGAGACATTATTCGGGCCTTTGAGCCTA
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACACTATTCGGG-CTTTGAGCCTA
*
27522908 GCAGGCTATGATGCCGGTGAAATAC
65 GCAGGCTATAATGCCGGTGAAATAC
* * *
27522933 TATTCGGGCCTTTGAGTCTAGCAGGCTATAATGCCGGTGAGATACTATTCGGGCTTTCGAGCCTA
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACACTATTCGGGCTTT-GAGCCTA
27522998 GCAGGCTATAATGCCGGTGAAATGA-
65 GCAGGCTATAATGCCGGTGAAAT-AC
* * *
27523023 TAATCAGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
27523061 TTTGAGAAAA
Statistics
Matches: 198, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
88 12 0.06
89 20 0.10
90 165 0.83
91 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (89 bp):
TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACACTATTCGGGCTTTGAGCCTAG
CAGGCTATAATGCCGGTGAAATAC
Found at i:27532348 original size:13 final size:13
Alignment explanation
Indices: 27532330--27532354 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27532320 TATTTTAATA
27532330 TTATTTTGTGTGT
1 TTATTTTGTGTGT
27532343 TTATTTTGTGTG
1 TTATTTTGTGTG
27532355 CATTCGATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:27534058 original size:41 final size:41
Alignment explanation
Indices: 27533892--27534047 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
27533882 TTTATCGTTA
* * * *
27533892 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
27533933 GTGA-A-ATTATTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACA-T-TTCAGACTATAAGTCTAGCAGGCTTAATGCCG
27533974 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
27534015 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
27534048 AAGAGCCGGT
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 102 0.95
42 2 0.02
43 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Found at i:27534318 original size:33 final size:32
Alignment explanation
Indices: 27534263--27534325 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
27534253 TAGATATGTA
27534263 TATATATATATGTTGCATTCGGCATAGGTGGT
1 TATATATATATGTTGCATTCGGCATAGGTGGT
* *
27534295 TATATTTATGTGTATGCATTCGGCATAGGTG
1 TATATATATATGT-TGCATTCGGCATAGGTG
27534326 AAAATAAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.24, C:0.10, G:0.25, T:0.41
Consensus pattern (32 bp):
TATATATATATGTTGCATTCGGCATAGGTGGT
Found at i:27539940 original size:40 final size:40
Alignment explanation
Indices: 27539881--27540068 Score: 313
Period size: 40 Copynumber: 4.7 Consensus size: 40
27539871 GAGCACTGGA
* *
27539881 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
27539921 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
27539961 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
*
27540001 ATATATCCGGGTTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
27540041 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
27540069 ATGTGTTTGC
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
Found at i:27548591 original size:40 final size:40
Alignment explanation
Indices: 27548532--27548719 Score: 313
Period size: 40 Copynumber: 4.7 Consensus size: 40
27548522 GAGCACTGGA
* *
27548532 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
27548572 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
27548612 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
*
27548652 ATATATCCGGGTTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
* *
27548692 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
27548720 ATGTGTTTGC
Statistics
Matches: 142, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
Found at i:27553524 original size:15 final size:15
Alignment explanation
Indices: 27553504--27553532 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
27553494 ATGATTTATT
27553504 CTAAGATTTATCTAA
1 CTAAGATTTATCTAA
27553519 CTAAGATTTATCTA
1 CTAAGATTTATCTA
27553533 CTTAAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (15 bp):
CTAAGATTTATCTAA
Found at i:27554683 original size:139 final size:139
Alignment explanation
Indices: 27554433--27554713 Score: 553
Period size: 139 Copynumber: 2.0 Consensus size: 139
27554423 ATATTTTAAA
*
27554433 ATTTATAATTGGGATGAATTTCAACTTATATTTTAGAAGAACATTGTCTTTTTTGCTTTTTTTTT
1 ATTTATAATTGGGATGAATTTCAACTTATATTTTAGAAGAACATTGTCTTTTTTACTTTTTTTTT
27554498 TTAAATAAAGAAAGCAATGACTTAACCATTAGAGTTGGCAAAACAGGTCCGAGCTTGAAAGTTCA
66 TTAAATAAAGAAAGCAATGACTTAACCATTAGAGTTGGCAAAACAGGTCCGAGCTTGAAAGTTCA
27554563 TCCATGTCG
131 TCCATGTCG
27554572 ATTTATAATTGGGATGAATTTCAACTTATATTTTAGAAGAACATTGTCTTTTTTACTTTTTTTTT
1 ATTTATAATTGGGATGAATTTCAACTTATATTTTAGAAGAACATTGTCTTTTTTACTTTTTTTTT
27554637 TTAAATAAAGAAAGCAATGACTTAACCATTAGAGTTGGCAAAACAGGTCCGAGCTTGAAAGTTCA
66 TTAAATAAAGAAAGCAATGACTTAACCATTAGAGTTGGCAAAACAGGTCCGAGCTTGAAAGTTCA
27554702 TCCATGTCG
131 TCCATGTCG
27554711 ATT
1 ATT
27554714 CGAGCCTGTA
Statistics
Matches: 141, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
139 141 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (139 bp):
ATTTATAATTGGGATGAATTTCAACTTATATTTTAGAAGAACATTGTCTTTTTTACTTTTTTTTT
TTAAATAAAGAAAGCAATGACTTAACCATTAGAGTTGGCAAAACAGGTCCGAGCTTGAAAGTTCA
TCCATGTCG
Found at i:27557976 original size:28 final size:29
Alignment explanation
Indices: 27557923--27557982 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
27557913 CCATAAAGTA
*
27557923 ATATTATAATATAACTATTACCAAAA-AT
1 ATATTATAATATAACTATTAACAAAAGAT
* *
27557951 ATATTATAATATAGATTA-TAATAAAAGAT
1 ATATTATAATATA-ACTATTAACAAAAGAT
27557980 ATA
1 ATA
27557983 ATATTACATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (29 bp):
ATATTATAATATAACTATTAACAAAAGAT
Found at i:27559480 original size:19 final size:21
Alignment explanation
Indices: 27559429--27559481 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 21
27559419 AAGATTTTTC
*
27559429 TTTTCTTCTATCCGATTCGGTTA
1 TTTTCTTCT-TTCGATTC-GTTA
27559452 TTTT-TTCTTTCGATTC-TT-
1 TTTTCTTCTTTCGATTCGTTA
27559470 TTTTCTTCTTTC
1 TTTTCTTCTTTC
27559482 CTTTTTGTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 4 0.14
19 9 0.32
21 7 0.25
22 4 0.14
23 4 0.14
ACGTcount: A:0.08, C:0.21, G:0.08, T:0.64
Consensus pattern (21 bp):
TTTTCTTCTTTCGATTCGTTA
Found at i:27560295 original size:24 final size:25
Alignment explanation
Indices: 27560268--27560316 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
27560258 TTTTGAGGGT
* *
27560268 GTTTTTAAATTTATT-ATTATTATG
1 GTTTTAAAATATATTAATTATTATG
27560292 GTTTTAAAATATATTAAATTATTAT
1 GTTTTAAAATATATT-AATTATTAT
27560317 TTTAATTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 13 0.62
26 8 0.38
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (25 bp):
GTTTTAAAATATATTAATTATTATG
Found at i:27564821 original size:45 final size:46
Alignment explanation
Indices: 27564750--27564838 Score: 103
Period size: 47 Copynumber: 1.9 Consensus size: 46
27564740 CAGGTTCAAT
27564750 AAAAAAAAAGAGAAAAATCAAAATCAAAAATCAAAAT-AAAATAAGAG
1 AAAAAAAAAGAGAAAAATC-AAATC-AAAATCAAAATGAAAATAAGAG
* **
27564797 AAAAAAAGAA-AGAAAAATC-TATCAAGGTCAAAATGAAAATAA
1 AAAAAAA-AAGAGAAAAATCAAATCAAAATCAAAATGAAAATAA
27564839 AAAGGAGAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
44 9 0.24
45 10 0.27
47 16 0.43
48 2 0.05
ACGTcount: A:0.71, C:0.07, G:0.10, T:0.12
Consensus pattern (46 bp):
AAAAAAAAAGAGAAAAATCAAATCAAAATCAAAATGAAAATAAGAG
Found at i:27565716 original size:7 final size:7
Alignment explanation
Indices: 27565704--27565764 Score: 90
Period size: 7 Copynumber: 9.0 Consensus size: 7
27565694 CTGAGTCAAA
27565704 AAAAATG
1 AAAAATG
27565711 AAAAATG
1 AAAAATG
27565718 AAAAATG
1 AAAAATG
*
27565725 -AGAATG
1 AAAAATG
27565731 AAAAATG
1 AAAAATG
*
27565738 AAAAACG
1 AAAAATG
27565745 -AAAATG
1 AAAAATG
27565751 AAAAATG
1 AAAAATG
27565758 AAAAATG
1 AAAAATG
27565765 GAGAGGATAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
6 10 0.21
7 38 0.79
ACGTcount: A:0.69, C:0.02, G:0.16, T:0.13
Consensus pattern (7 bp):
AAAAATG
Found at i:27565730 original size:13 final size:13
Alignment explanation
Indices: 27565705--27565761 Score: 71
Period size: 13 Copynumber: 4.3 Consensus size: 13
27565695 TGAGTCAAAA
27565705 AAAATGAAAAATG
1 AAAATGAAAAATG
*
27565718 AAAAATG-AGAATG
1 -AAAATGAAAAATG
*
27565731 AAAAATGAAAAACG
1 -AAAATGAAAAATG
27565745 AAAATGAAAAATG
1 AAAATGAAAAATG
27565758 AAAA
1 AAAA
27565762 ATGGAGAGGA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
13 28 0.74
14 10 0.26
ACGTcount: A:0.70, C:0.02, G:0.16, T:0.12
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:27565732 original size:20 final size:20
Alignment explanation
Indices: 27565705--27565764 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
27565695 TGAGTCAAAA
27565705 AAAATGAAAAATGAAAAATG
1 AAAATGAAAAATGAAAAATG
* *
27565725 AGAATGAAAAATGAAAAACG
1 AAAATGAAAAATGAAAAATG
27565745 AAAATGAAAAATGAAAAATG
1 AAAATGAAAAATGAAAAATG
27565765 GAGAGGATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.68, C:0.02, G:0.17, T:0.13
Consensus pattern (20 bp):
AAAATGAAAAATGAAAAATG
Found at i:27565734 original size:27 final size:27
Alignment explanation
Indices: 27565705--27565764 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
27565695 TGAGTCAAAA
* *
27565705 AAAATGAAAAATGAAAAATG-AGAATGA
1 AAAATGAAAAACG-AAAATGAAAAATGA
27565732 AAAATGAAAAACGAAAATGAAAAATGA
1 AAAATGAAAAACGAAAATGAAAAATGA
27565759 AAAATG
1 AAAATG
27565765 GAGAGGATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 6 0.20
27 24 0.80
ACGTcount: A:0.68, C:0.02, G:0.17, T:0.13
Consensus pattern (27 bp):
AAAATGAAAAACGAAAATGAAAAATGA
Found at i:27567093 original size:44 final size:44
Alignment explanation
Indices: 27567034--27567423 Score: 254
Period size: 44 Copynumber: 8.7 Consensus size: 44
27567024 GACACTGTCC
*
27567034 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGGATCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATAAAGGATCT
* * *** *
27567078 TATCTCTCTGAAGTTACAGTAGAGTAGA-TCGCAT-CAGG-TCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATAAAGGATCT
* ** * **
27567119 TATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGATTTTCAGAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGA-TTAA-A-ATAAAG-GATCT
* * * * ** *
27567167 TATCTCCCTG-AGATTACAGCGGAGTAGATT-GAAGACACTATCC
1 TATCTCCCTGAAG-TTACAGTGGAGTAGATTAAAATAAAGGATCT
*
27567210 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGGATCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATAAAGGATCT
* * * *
27567254 TATCTCACTGAAGTTACAGTAGAGTAGATCGCATCAAATTGAAGCCAGAAATCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGAT----T-AAAAT-AA---AG-GATCT
* * * * * ** *
27567308 TATCTCCCTG-AGATTACAGCGGAGCAGATT-GAAGACACTATCC
1 TATCTCCCTGAAG-TTACAGTGGAGTAGATTAAAATAAAGGATCT
* *
27567351 TATCTCCCTGAAGTTACAGTGGGGCAGATTAAAATAAAGGATCT
1 TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATAAAGGATCT
* *
27567395 TATCTCTCTGAAGTTACAGTAGAGTAGAT
1 TATCTCCCTGAAGTTACAGTGGAGTAGAT
27567424 CGCATCAGAT
Statistics
Matches: 261, Mismatches: 62, Indels: 46
0.71 0.17 0.12
Matches are distributed among these distances:
41 28 0.11
42 3 0.01
43 59 0.23
44 97 0.37
45 2 0.01
46 3 0.01
47 3 0.01
48 29 0.11
49 4 0.02
50 3 0.01
53 4 0.02
54 26 0.10
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
TATCTCCCTGAAGTTACAGTGGAGTAGATTAAAATAAAGGATCT
Found at i:27567279 original size:176 final size:174
Alignment explanation
Indices: 27566974--27567289 Score: 578
Period size: 176 Copynumber: 1.8 Consensus size: 174
27566964 AACAGACCAT
*
27566974 CGAAGATTTTCAGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGACACTGTCCTATCT
1 CGAAGATTTTCAGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGACACTATCCTATCT
*
27567039 CCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTA
66 CCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCACTGAAGTTACAGTAGAGTA
27567104 GATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGAC
131 GATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGAC
* *
27567148 CGAAGATTTTCAGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGACACTATCCTAT
1 CGAAGATTTTC--AGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGACACTATCCTAT
27567213 CTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCACTGAAGTTACAGTAGAG
64 CTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCACTGAAGTTACAGTAGAG
27567278 TAGATCGCATCA
129 TAGATCGCATCA
27567290 AATTGAAGCC
Statistics
Matches: 136, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
174 11 0.08
176 125 0.92
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (174 bp):
CGAAGATTTTCAGATCTTATCTCCCTGAGATTACAGCAGAGCAGATTGAAGACACTATCCTATCT
CCCTGAAGTTACAGTGGAGCAGATTAAAATAAAGGATCTTATCTCACTGAAGTTACAGTAGAGTA
GATCGCATCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGAC
Found at i:27567498 original size:44 final size:44
Alignment explanation
Indices: 27567450--27567664 Score: 148
Period size: 44 Copynumber: 4.7 Consensus size: 44
27567440 CAAAAATCTT
27567450 ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCA
1 ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCA
* * ** * **
27567494 ATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAAG-GATCTT
1 ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCT--AGTAATCCA
* * * ** **
27567538 ATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATCAGATTGAAGCCAAAAATCTT
1 ATCTCCCTGAGA-TTAC---AGCG--GA--G---CAGATTGAAGCTAGTAATCCA
27567592 ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCA
1 ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCA
* *
27567636 ATCTCCCTGAGATTACAGTGGAGCGGATT
1 ATCTCCCTGAGATTACAGCGGAGCAGATT
27567665 AAAATAAAGG
Statistics
Matches: 131, Mismatches: 24, Indels: 32
0.70 0.13 0.17
Matches are distributed among these distances:
43 4 0.03
44 86 0.66
45 2 0.02
47 4 0.03
49 4 0.03
51 4 0.03
53 1 0.01
54 23 0.18
55 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (44 bp):
ATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCA
Found at i:27567571 original size:142 final size:141
Alignment explanation
Indices: 27567163--27567857 Score: 1128
Period size: 142 Copynumber: 4.9 Consensus size: 141
27567153 ATTTTCAGAG
* *
27567163 ATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGACACT-ATCCTATCTCCCTGA-AGTTA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-CAGTAATCCTATCTCCCTGAGA-TTA
* * *
27567226 CAGTGGAGCAGATTAAAATAAAGGATCTTATCTCACTGAAGTTACAGTAGAGTAGATCGCATCAA
64 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
*
27567291 ATTGAAGCCAGAA
129 ATTGAAGCCAAAA
*
27567304 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGACACT-ATCCTATCTCCCTGA-AGTTA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAG-CAGTAATCCTATCTCCCTGAGA-TTA
* *
27567367 CAGTGGGGCAGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
64 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
27567432 ATTGAAGCCAAAA
129 ATTGAAGCCAAAA
*
27567445 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCAATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC-AGTAATCCTATCTCCCTGAGATTAC
27567510 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
65 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
27567575 TTGAAGCCAAAA
130 TTGAAGCCAAAA
*
27567587 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCAATCTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGC-AGTAATCCTATCTCCCTGAGATTAC
*
27567652 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCGTCAGA
65 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGA
*
27567717 TTGAAGCCAGAA
130 TTGAAGCCAAAA
** * *
27567729 ATCTTATCTCCCTGAGATTACAGCGGAGCACCTTGAAACCAGTAATCCTATCTCCCTAAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTG-AAGCAGTAATCCTATCTCCCTGAGATTAC
* *
27567794 AATGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
65 AGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAG
27567858 GTCTTATCTC
Statistics
Matches: 531, Mismatches: 19, Indels: 7
0.95 0.03 0.01
Matches are distributed among these distances:
140 1 0.00
141 176 0.33
142 350 0.66
143 4 0.01
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (141 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCAGTAATCCTATCTCCCTGAGATTACA
GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGAT
TGAAGCCAAAA
Found at i:27567684 original size:44 final size:44
Alignment explanation
Indices: 27567586--27567800 Score: 112
Period size: 44 Copynumber: 4.7 Consensus size: 44
27567576 TGAAGCCAAA
* **
27567586 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAGT
** *
27567630 AATCCAATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAAG-
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAAT--AGT
* * *** *
27567674 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCGTCAGATTGAAGCCAGA
1 AATCTTATCTCCCTGAGA-TTACAGT---G--GA----G-CAGATTGAAAATAGT
* ** **
27567728 AATCTTATCTCCCTGAGATTACAGCGGAGCACCTTGAAACCAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAGT
* * *
27567772 AATCCTATCTCCCTAAGATTACAATGGAG
1 AATCTTATCTCCCTGAGATTACAGTGGAG
27567801 TGGATTAAAA
Statistics
Matches: 130, Mismatches: 25, Indels: 32
0.70 0.13 0.17
Matches are distributed among these distances:
43 4 0.03
44 86 0.66
45 3 0.02
47 1 0.01
49 4 0.03
51 1 0.01
53 3 0.02
54 25 0.19
55 3 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (44 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAAATAGT
Found at i:27567991 original size:50 final size:50
Alignment explanation
Indices: 27567933--27568392 Score: 361
Period size: 50 Copynumber: 9.2 Consensus size: 50
27567923 ACAGTGGAAC
27567933 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
* * * ** * * * ** *
27567983 AGATTAAAGCCACAGCGGTGAATCCTACTTCCTTGGCAGTATAGTGGAAC
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
* * *
27568033 AGGTTAAAGCCACATCGGTGAATCTTGCTTCCTCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
* * * * * * * ** *
27568083 AGATTAAAGCCACAGCAGCGAATCCTACTTCCCAGACGA-TGCAGTGGAAC
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGAC-ATTGTAGTTAAAA
* * *
27568133 AGATTAAAGCCATATTGGTGAATCTTGCTTCCTCGACATTGTAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
* ** * * * * * ** *
27568183 AGATTAAAGCCACAGCGGCAAATCCTACTTCCCAGGCAATGTAGTGGAAT
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
* * *
27568233 AGATTAAAGCTACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTCAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
* * * * * * * ** ** *
27568283 AGATTAAAGCTACAAT-AGCGAAT-TTAACCTCCCAGGCGATACT-GTGGAAT
1 AGATTAAAGCCAC-ATCGGTGAATCTT-GCTTCCCCGAC-ATTGTAGTTAAAA
* *
27568333 AGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
27568383 AGATTAAAGC
1 AGATTAAAGC
27568393 TTCAACAGCG
Statistics
Matches: 302, Mismatches: 100, Indels: 16
0.72 0.24 0.04
Matches are distributed among these distances:
49 6 0.02
50 289 0.96
51 7 0.02
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (50 bp):
AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
Found at i:27568457 original size:100 final size:100
Alignment explanation
Indices: 27567918--27568442 Score: 658
Period size: 100 Copynumber: 5.2 Consensus size: 100
27567908 TATCTCTCAA
*
27567918 GCGATACAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
1 GCGATACAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* * **
27567983 AGATTAAAGCCACAGCGGTGAATCCTACTTCCTTG
66 AGATTAAAGCCACAGCAGCGAATCCTACTTCCCAG
* * *
27568018 GC-AGTATAGTGGAACAGGTTAAAGCCACATCGGTGAATCTTGCTTCCTCGACATTGCAGTTAAA
1 GCGA-TACAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAA
27568082 AAGATTAAAGCCACAGCAGCGAATCCTACTTCCCAG
65 AAGATTAAAGCCACAGCAGCGAATCCTACTTCCCAG
* * * * * *
27568118 ACGATGCAGTGGAACAGATTAAAGCCATATTGGTGAATCTTGCTTCCTCGACATTGTAGTTAAAA
1 GCGATACAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* *
27568183 AGATTAAAGCCACAGCGGCAAATCCTACTTCCCAG
66 AGATTAAAGCCACAGCAGCGAATCCTACTTCCCAG
* ** * * *
27568218 GCAATGTAGTGGAATAGATTAAAGCTACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTCAAA
1 GCGATACAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
* ** * *
27568283 AGATTAAAGCTACAATAGCGAAT-TTAACCTCCCAG
66 AGATTAAAGCCACAGCAGCGAATCCT-ACTTCCCAG
* * *
27568318 GCGATACTGTGGAATAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 GCGATACAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
** * * * *
27568383 AGATTAAAGCTTCAACAGCGAATCTTACTCCCCAA
66 AGATTAAAGCCACAGCAGCGAATCCTACTTCCCAG
* * * *
27568418 GCGGTCCAGTGGAACAAATTGAAGC
1 GCGATACAGTGGAACAGATTAAAGC
27568443 TACAACAGCA
Statistics
Matches: 369, Mismatches: 52, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
99 2 0.01
100 364 0.99
101 3 0.01
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (100 bp):
GCGATACAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
AGATTAAAGCCACAGCAGCGAATCCTACTTCCCAG
Found at i:27569267 original size:22 final size:22
Alignment explanation
Indices: 27569231--27569287 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 22
27569221 CAAAAGGTTT
27569231 TTCTTTTCTTCTTTCCGATTCGG
1 TTCTTTTCTTCTTT-CGATTCGG
27569254 TTCTTTT-TTCTTTCGATTC--
1 TTCTTTTCTTCTTTCGATTCGG
27569273 TAT-TTTTCTTCTTTC
1 T-TCTTTTCTTCTTTC
27569288 CTTTTTGTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
19 5 0.16
20 8 0.25
21 6 0.19
22 6 0.19
23 7 0.22
ACGTcount: A:0.05, C:0.23, G:0.07, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTCTTTCGATTCGG
Found at i:27569273 original size:16 final size:17
Alignment explanation
Indices: 27569249--27569282 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
27569239 TTCTTTCCGA
*
27569249 TTCGGTTCT-TTTTTCT
1 TTCGATTCTATTTTTCT
27569265 TTCGATTCTATTTTTCT
1 TTCGATTCTATTTTTCT
27569282 T
1 T
27569283 CTTTCCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.06, C:0.18, G:0.09, T:0.68
Consensus pattern (17 bp):
TTCGATTCTATTTTTCT
Found at i:27570100 original size:24 final size:25
Alignment explanation
Indices: 27570073--27570121 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
27570063 TTTTGAGGGT
* *
27570073 GTTTTTAAATTTATT-ATTATTATG
1 GTTTTAAAATATATTAATTATTATG
27570097 GTTTTAAAATATATTAAATTATTAT
1 GTTTTAAAATATATT-AATTATTAT
27570122 TTTAATTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 13 0.62
26 8 0.38
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (25 bp):
GTTTTAAAATATATTAATTATTATG
Found at i:27572868 original size:19 final size:18
Alignment explanation
Indices: 27572846--27572905 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 18
27572836 AAATTACAAA
27572846 AAAAATCAAAATAATTTT
1 AAAAATCAAAATAATTTT
*
27572864 CAAAAATTAAAAATAAATTTT
1 -AAAAA-TCAAAAT-AATTTT
* *
27572885 AAAATTCAAAATATTTTT
1 AAAAATCAAAATAATTTT
27572903 AAA
1 AAA
27572906 TATTCTAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
18 8 0.23
19 11 0.31
20 10 0.29
21 6 0.17
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAAATCAAAATAATTTT
Found at i:27572910 original size:19 final size:19
Alignment explanation
Indices: 27572846--27572916 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 19
27572836 AAATTACAAA
* *
27572846 AAAAATCAAAATAATTTTCA
1 AAAATTCAAAATAATTTT-T
* *
27572866 AAAATTAAAAATAAATTTT
1 AAAATTCAAAATAATTTTT
27572885 AAAATTCAAAAT-ATTTTT
1 AAAATTCAAAATAATTTTT
27572903 AAATATTCTAAAAT
1 AAA-ATTC-AAAAT
27572917 TTGTATTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
18 8 0.19
19 15 0.35
20 20 0.47
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:27581291 original size:118 final size:117
Alignment explanation
Indices: 27581045--27581262 Score: 253
Period size: 118 Copynumber: 1.9 Consensus size: 117
27581035 ATGTACTACT
* * * * *
27581045 ATAC-TATATAACTATTATTATACTATAGGTTATAATAAAAGATACAGTACTACATAATATTATA
1 ATACATATATAACTATTATTATAATACAGATTATAATAAAAGATACAATACTACAT-AGATTATA
* * * *
27581109 ATGTTTAGTAATTAATACACACCTATAAACTATTAATATTACTAAAAATATTA
65 ATGTTTAATAATCAATACACACATATAAACTATTAATATTACTAAAAATATAA
* *
27581162 ATACATATATAACTATTATTATAATACAGATTATAATAAAAGATATAATATTACAT-GA-TATAA
1 ATACATATATAACTATTATTATAATACAGATTATAATAAAAGATACAATACTACATAGATTATAA
* * * * * *
27581225 TGTTTAATCATCGATGCATATATATAAATTATTAATAT
66 TGTTTAATAATCAATACACACATATAAACTATTAATAT
27581263 ATTATATAAT
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
115 34 0.40
116 1 0.01
117 4 0.05
118 45 0.54
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.39
Consensus pattern (117 bp):
ATACATATATAACTATTATTATAATACAGATTATAATAAAAGATACAATACTACATAGATTATAA
TGTTTAATAATCAATACACACATATAAACTATTAATATTACTAAAAATATAA
Found at i:27581482 original size:232 final size:230
Alignment explanation
Indices: 27581193--27581632 Score: 591
Period size: 239 Copynumber: 1.9 Consensus size: 230
27581183 TAATACAGAT
* *
27581193 TATAATAAAAGATATAATATTACATGATATAATGTTTAATCATCGATGCATATATATAAATTATT
1 TATAATAAAAGATATAATATTACATGATATAATGTTTAATCATCGATGCATATATATAAACTATC
* * *
27581258 AATATATTATATA-ATATG-A-AAT-AACATTATATAATATAGTAGGTGGTTTAACTTTCAAATG
66 AATATATTATATACATATGAACAATAAACATTATATAATATAGTAGGAGGTCTAACTTCCAAATG
*
27581319 TACACAAAGGATAGGAACTTAAAGCATATTTCAACCAATATAATAATAAACAATAACATATGATA
131 CACACAAAGGATAGGAACTTAAAGCATATTTCAACC-A-AT-ATAATAAACAATAACATATGATA
27581384 ATAATTAATATATAATGTACTACTGTTATATTATAGAA
193 ATAATTAATATATAATGTACTACTGTTATATTATAGAA
** * *
27581422 TATAATAAAAGATATGGTATTACATAATATTATAATGTTTAATCATTGATGCATATATATAAACT
1 TATAATAAAAGATATAATATTACAT--GA-TATAATGTTTAATCATCGATGCATATATATAAACT
27581487 ATCAATATATTATATACTATATGACACAATACAACATTATATAATATAGTAGGAGGTCTAACTTC
63 ATCAATATATTATATAC-ATATGA-ACAATA-AACATTATATAATATAGTAGGAGGTCTAACTTC
* * ** * * * * * *
27581552 CAAATGCATATAAATTATAGGGATTTAGAGCATATTTCAACCAGTATAATAAATAATAATATATG
125 CAAATGCACACAAAGGATAGGAACTTAAAGCATATTTCAACCAATATAATAAACAATAACATATG
27581617 ATAATAATTAATATAT
190 ATAATAATTAATATAT
27581633 TATATATTAC
Statistics
Matches: 181, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
229 23 0.13
231 1 0.01
232 48 0.27
234 5 0.03
236 35 0.19
237 4 0.02
238 1 0.01
239 64 0.35
ACGTcount: A:0.46, C:0.08, G:0.09, T:0.36
Consensus pattern (230 bp):
TATAATAAAAGATATAATATTACATGATATAATGTTTAATCATCGATGCATATATATAAACTATC
AATATATTATATACATATGAACAATAAACATTATATAATATAGTAGGAGGTCTAACTTCCAAATG
CACACAAAGGATAGGAACTTAAAGCATATTTCAACCAATATAATAAACAATAACATATGATAATA
ATTAATATATAATGTACTACTGTTATATTATAGAA
Found at i:27584305 original size:25 final size:26
Alignment explanation
Indices: 27584262--27584333 Score: 87
Period size: 25 Copynumber: 2.8 Consensus size: 26
27584252 TGTGCCCATA
*
27584262 CGAG-CATATAATCGGGAAGCTC-TTT
1 CGAGCCATATAA-CGGGAAGCTCATGT
*
27584287 CGAGCCATATAACGAGAAGCTCATGT
1 CGAGCCATATAACGGGAAGCTCATGT
*
27584313 -GAGCCATGTAACGGGAAGCTC
1 CGAGCCATATAACGGGAAGCTC
27584334 CGGAGAACCA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 32 0.78
26 9 0.22
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (26 bp):
CGAGCCATATAACGGGAAGCTCATGT
Found at i:27584405 original size:24 final size:24
Alignment explanation
Indices: 27584274--27584405 Score: 86
Period size: 24 Copynumber: 5.4 Consensus size: 24
27584264 AGCATATAAT
***
27584274 CGGGAAGCTCTTTCGAGCCATATAA
1 CGGGAAGCTCTGGAGAGCCAT-TAA
* *
27584299 CGAGAAGCTCAT-GTGAGCCATGTAA
1 CGGGAAGCTC-TGGAGAGCCAT-TAA
* *
27584324 CGGGAAGCTCCGGAGAACCATTAA
1 CGGGAAGCTCTGGAGAGCCATTAA
* * ** * * *
27584348 TGGGAAGTTCAAGTGAGCCAATAT
1 CGGGAAGCTCTGGAGAGCCATTAA
* *
27584372 CAGGACGCTCTGGAGAGCCATTAA
1 CGGGAAGCTCTGGAGAGCCATTAA
27584396 CGGGAAGCTC
1 CGGGAAGCTC
27584406 ATAAGAGCCA
Statistics
Matches: 78, Mismatches: 27, Indels: 5
0.71 0.25 0.05
Matches are distributed among these distances:
24 42 0.54
25 35 0.45
26 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.19
Consensus pattern (24 bp):
CGGGAAGCTCTGGAGAGCCATTAA
Found at i:27584414 original size:48 final size:49
Alignment explanation
Indices: 27584288--27584416 Score: 127
Period size: 48 Copynumber: 2.6 Consensus size: 49
27584278 AAGCTCTTTC
* * * *
27584288 GAGCCATATAACGAGAAGCTCATGTGAGCCATGTAACGGGAAGCTCCGGA
1 GAGCCAT-TAACGGGAAGCTCATATGAGCCATATAACAGGAAGCTCCGGA
* * * * * *
27584338 GAACCATTAATGGGAAGTTCA-AGTGAGCCA-ATATCAGGACGCTCTGGA
1 GAGCCATTAACGGGAAGCTCATA-TGAGCCATATAACAGGAAGCTCCGGA
*
27584386 GAGCCATTAACGGGAAGCTCATAAGAGCCAT
1 GAGCCATTAACGGGAAGCTCATATGAGCCAT
27584417 TTATCGAGAA
Statistics
Matches: 62, Mismatches: 14, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
48 37 0.60
49 19 0.31
50 6 0.10
ACGTcount: A:0.33, C:0.21, G:0.28, T:0.18
Consensus pattern (49 bp):
GAGCCATTAACGGGAAGCTCATATGAGCCATATAACAGGAAGCTCCGGA
Found at i:27584436 original size:25 final size:25
Alignment explanation
Indices: 27584399--27584463 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
27584389 CCATTAACGG
** ** *
27584399 GAAGCTCATAAGAGCCATTTATCGA
1 GAAGCTCCGAAGAGCCAAATATCAA
*
27584424 GAAGCTTCGAAGAGCCAAATATCAA
1 GAAGCTCCGAAGAGCCAAATATCAA
27584449 GAAGCTCCGAAGAGC
1 GAAGCTCCGAAGAGC
27584464 AATAAACGAG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (25 bp):
GAAGCTCCGAAGAGCCAAATATCAA
Found at i:27586155 original size:9 final size:9
Alignment explanation
Indices: 27586136--27586175 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
27586126 TTTGGTTAAA
*
27586136 AATTACCCG
1 AATTAACCG
*
27586145 AATTAATCG
1 AATTAACCG
*
27586154 AATTAACCA
1 AATTAACCG
27586163 AATTAACCG
1 AATTAACCG
27586172 AATT
1 AATT
27586176 GAATCACTAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:27586318 original size:18 final size:18
Alignment explanation
Indices: 27586278--27586321 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
27586268 AATTTTTATT
**
27586278 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
27586296 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
27586314 CTTGGGTT
1 ATTGGGTT
27586322 TAAATTGAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:27590312 original size:3 final size:3
Alignment explanation
Indices: 27590304--27590330 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
27590294 TGAATTTACC
27590304 AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA
27590331 GAACTGGGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:27594538 original size:3 final size:3
Alignment explanation
Indices: 27594530--27594563 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
27594520 GAGAGCCAAT
*
27594530 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAA AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
27594564 GCAAAGACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:27597514 original size:22 final size:22
Alignment explanation
Indices: 27597489--27597530 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
27597479 ATCAATCCCT
27597489 TAATAAAAAAAAGGACCCATTC
1 TAATAAAAAAAAGGACCCATTC
27597511 TAATAAAAAAAAGGACCCAT
1 TAATAAAAAAAAGGACCCAT
27597531 GAGAATGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.17, G:0.10, T:0.17
Consensus pattern (22 bp):
TAATAAAAAAAAGGACCCATTC
Found at i:27607829 original size:18 final size:18
Alignment explanation
Indices: 27607806--27607840 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
27607796 ACCGCTTACC
27607806 GTCTCCGCCGTGGGAGTG
1 GTCTCCGCCGTGGGAGTG
*
27607824 GTCTCCGCCTTGGGAGT
1 GTCTCCGCCGTGGGAGT
27607841 AGCGGGCGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.29, G:0.40, T:0.26
Consensus pattern (18 bp):
GTCTCCGCCGTGGGAGTG
Found at i:27616116 original size:3 final size:3
Alignment explanation
Indices: 27616108--27616180 Score: 112
Period size: 3 Copynumber: 24.7 Consensus size: 3
27616098 GAAATCAAGA
*
27616108 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAT AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
* *
27616156 AAT AAG -AG AAG TAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
27616181 AAAGTAAAAG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
2 2 0.03
3 61 0.97
ACGTcount: A:0.66, C:0.00, G:0.30, T:0.04
Consensus pattern (3 bp):
AAG
Found at i:27617847 original size:21 final size:21
Alignment explanation
Indices: 27617806--27617844 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
27617796 GTTTATGTTT
*
27617806 TATTATTTTAACCATTATTAA
1 TATTATTATAACCATTATTAA
27617827 TATTATTATAA-CATTATT
1 TATTATTATAACCATTATT
27617845 TAACATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (21 bp):
TATTATTATAACCATTATTAA
Found at i:27619010 original size:79 final size:79
Alignment explanation
Indices: 27618801--27619003 Score: 388
Period size: 79 Copynumber: 2.6 Consensus size: 79
27618791 GCTACAATTC
* *
27618801 TTTTATTATCCAATGGTTGCAAATATTAGCATATGTTAGCATGAAAAATTTTCAACATTTCAAAG
1 TTTTATTATCCAACGGTTGCAAATAGTAGCATATGTTAGCATGAAAAATTTTCAACATTTCAAAG
27618866 TCCAAACTATTGAA
66 TCCAAACTATTGAA
27618880 TTTTATTATCCAACGGTTGCAAATAGTAGCATATGTTAGCATGAAAAATTTTCAACATTTCAAAG
1 TTTTATTATCCAACGGTTGCAAATAGTAGCATATGTTAGCATGAAAAATTTTCAACATTTCAAAG
27618945 TCCAAACTATTGAA
66 TCCAAACTATTGAA
27618959 TTTTATTATCCAACGGTTGCAAATAGTAGCATATGTTAGCATGAA
1 TTTTATTATCCAACGGTTGCAAATAGTAGCATATGTTAGCATGAA
27619004 GTATTTTGAC
Statistics
Matches: 122, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
79 122 1.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.35
Consensus pattern (79 bp):
TTTTATTATCCAACGGTTGCAAATAGTAGCATATGTTAGCATGAAAAATTTTCAACATTTCAAAG
TCCAAACTATTGAA
Found at i:27619431 original size:12 final size:12
Alignment explanation
Indices: 27619414--27619466 Score: 52
Period size: 12 Copynumber: 4.0 Consensus size: 12
27619404 CTTATTATGA
27619414 ATTTTTATAATT
1 ATTTTTATAATT
*
27619426 ATTTTTAATATGTTTT
1 ATTTTT-ATA---ATT
27619442 ATTTTTTATAATT
1 A-TTTTTATAATT
27619455 ATTTTTATAATT
1 ATTTTTATAATT
27619467 TATTATAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
12 17 0.50
13 6 0.18
16 6 0.18
17 5 0.15
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (12 bp):
ATTTTTATAATT
Found at i:27619477 original size:19 final size:19
Alignment explanation
Indices: 27619387--27619517 Score: 88
Period size: 19 Copynumber: 6.6 Consensus size: 19
27619377 TCAATAAATG
* *
27619387 ATTATAATTTATTAGAACTT
1 ATTATAATTT-TTATAATTT
27619407 ATTATGAATTTTTATAA-TT
1 ATTAT-AATTTTTATAATTT
* **
27619426 ATTTTTAATATGTTTTATTTTTT
1 A-TTAT-A-AT-TTTTATAATTT
* *
27619449 ATAATTATTTTTATAATTT
1 ATTATAATTTTTATAATTT
* *
27619468 ATTATAATTTATATAATAT
1 ATTATAATTTTTATAATTT
27619487 -TTATAAGTTTTTATGAATTT
1 ATTATAA-TTTTTAT-AATTT
27619507 -TTATAATTTTT
1 ATTATAATTTTT
27619518 GTAGGTTTAC
Statistics
Matches: 88, Mismatches: 16, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
18 6 0.07
19 38 0.43
20 26 0.30
21 7 0.08
22 8 0.09
23 3 0.03
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (19 bp):
ATTATAATTTTTATAATTT
Found at i:27619478 original size:29 final size:28
Alignment explanation
Indices: 27619417--27619506 Score: 85
Period size: 29 Copynumber: 3.1 Consensus size: 28
27619407 ATTATGAATT
**
27619417 TTTATAATTATTTTTA-ATATGTTTTATTT
1 TTTATAATTATTTTTATA-AT-TTTTATAA
27619446 TTTATAATTATTTTTATAATTTATTATAA
1 TTTATAATTATTTTTATAATTT-TTATAA
* *
27619475 TTTAT-ATAATATTTATAAGTTTTTATGAA
1 TTTATAATTATTTTTATAA-TTTTTAT-AA
27619504 TTT
1 TTT
27619507 TTATAATTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
28 17 0.32
29 35 0.66
30 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (28 bp):
TTTATAATTATTTTTATAATTTTTATAA
Found at i:27619482 original size:9 final size:9
Alignment explanation
Indices: 27619388--27619517 Score: 91
Period size: 10 Copynumber: 13.2 Consensus size: 9
27619378 CAATAAATGA
27619388 TTATAATTT
1 TTATAATTT
* *
27619397 ATTAGAACTTA
1 -TTATAA-TTT
27619408 TTATGAATTT
1 TTAT-AATTT
27619418 TTATAATTAT
1 TTATAATT-T
*
27619428 TTTTAATATGT
1 TTATAAT-T-T
*
27619439 TT-TATTTT
1 TTATAATTT
27619447 TTATAATTATTT
1 TTAT-A--ATTT
27619459 TTATAATTT
1 TTATAATTT
27619468 ATTATAATTT
1 -TTATAATTT
* *
27619478 ATATAATAT
1 TTATAATTT
27619487 TTATAAGTTT
1 TTATAA-TTT
27619497 TTATGAATTT
1 TTAT-AATTT
27619507 TTATAATTT
1 TTATAATTT
27619516 TT
1 TT
27619518 GTAGGTTTAC
Statistics
Matches: 97, Mismatches: 12, Indels: 23
0.73 0.09 0.17
Matches are distributed among these distances:
8 3 0.03
9 29 0.30
10 47 0.48
11 11 0.11
12 7 0.07
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.62
Consensus pattern (9 bp):
TTATAATTT
Found at i:27619589 original size:21 final size:22
Alignment explanation
Indices: 27619563--27619605 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
27619553 TTACTTTTTT
27619563 TATTTTTAATGA-TTTTTGAAA
1 TATTTTTAATGATTTTTTGAAA
**
27619584 TATTTTTTTTGATTTTTTGAAA
1 TATTTTTAATGATTTTTTGAAA
27619606 AAAAATATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (22 bp):
TATTTTTAATGATTTTTTGAAA
Found at i:27633866 original size:416 final size:416
Alignment explanation
Indices: 27633095--27633928 Score: 1650
Period size: 416 Copynumber: 2.0 Consensus size: 416
27633085 TTGGAAAAAG
* *
27633095 GTACTCAGATTTGGCCGTAAGGGCAAGTTGAGTCCGAGATTCATTGGGCCGTACGAAATCTCCGA
1 GTACTCAGATTTGGCCGTAAAGGCAAGTTGAGCCCGAGATTCATTGGGCCGTACGAAATCTCCGA
27633160 ACGAGTTGGTCCAGTTGCGTATAGATTGATTTTGCCCCCTGAACTTGAAAAGATTCACGACGTCT
66 ACGAGTTGGTCCAGTTGCGTATAGATTGATTTTGCCCCCTGAACTTGAAAAGATTCACGACGTCT
27633225 TTCATGTTTCGATGCTTTGACGTTATAGATCCGATCCGTCACACGTGATTAATCCATCAGAAGTT
131 TTCATGTTTCGATGCTTTGACGTTATAGATCCGATCCGTCACACGTGATTAATCCATCAGAAGTT
27633290 GAAATTCAATCTGACTTGAGTTATGAAGAAGAACCGATTCGTATCCTAGCTCGTGAAGTGAAAGA
196 GAAATTCAATCTGACTTGAGTTATGAAGAAGAACCGATTCGTATCCTAGCTCGTGAAGTGAAAGA
27633355 GTTGCAAAACAAAAGGGTTCCGTTAGTAAAGGTGTTATGGCTCAAACACGGAGTCGAAGAAGCTA
261 GTTGCAAAACAAAAGGGTTCCGTTAGTAAAGGTGTTATGGCTCAAACACGGAGTCGAAGAAGCTA
27633420 CTTGGGAAACCGAGAATGCCATGAAAGAACGATACCCAAACTTATTTACCGGTAAGATTTTCGGG
326 CTTGGGAAACCGAGAATGCCATGAAAGAACGATACCCAAACTTATTTACCGGTAAGATTTTCGGG
27633485 GACGAAAATTTCTTAAGTGGGGGAGA
391 GACGAAAATTTCTTAAGTGGGGGAGA
27633511 GTACTCAGATTTGGCCGTAAAGGCAAGTTGAGCCCGAGATTCATTGGGCCGTACGAAATCTCCGA
1 GTACTCAGATTTGGCCGTAAAGGCAAGTTGAGCCCGAGATTCATTGGGCCGTACGAAATCTCCGA
27633576 ACGAGTTGGTCCAGTTGCGTATAGATTGATTTTGCCCCCTGAACTTGAAAAGATTCACGACGTCT
66 ACGAGTTGGTCCAGTTGCGTATAGATTGATTTTGCCCCCTGAACTTGAAAAGATTCACGACGTCT
27633641 TTCATGTTTCGATGCTTTGACGTTATAGATCCGATCCGTCACACGTGATTAATCCATCAGAAGTT
131 TTCATGTTTCGATGCTTTGACGTTATAGATCCGATCCGTCACACGTGATTAATCCATCAGAAGTT
27633706 GAAATTCAATCTGACTTGAGTTATGAAGAAGAACCGATTCGTATCCTAGCTCGTGAAGTGAAAGA
196 GAAATTCAATCTGACTTGAGTTATGAAGAAGAACCGATTCGTATCCTAGCTCGTGAAGTGAAAGA
27633771 GTTGCAAAACAAAAGGGTTCCGTTAGTAAAGGTGTTATGGCTCAAACACGGAGTCGAAGAAGCTA
261 GTTGCAAAACAAAAGGGTTCCGTTAGTAAAGGTGTTATGGCTCAAACACGGAGTCGAAGAAGCTA
27633836 CTTGGGAAACCGAGAATGCCATGAAAGAACGATACCCAAACTTATTTACCGGTAAGATTTTCGGG
326 CTTGGGAAACCGAGAATGCCATGAAAGAACGATACCCAAACTTATTTACCGGTAAGATTTTCGGG
27633901 GACGAAAATTTCTTAAGTGGGGGAGA
391 GACGAAAATTTCTTAAGTGGGGGAGA
27633927 GT
1 GT
27633929 TGTGACAGCC
Statistics
Matches: 416, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
416 416 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (416 bp):
GTACTCAGATTTGGCCGTAAAGGCAAGTTGAGCCCGAGATTCATTGGGCCGTACGAAATCTCCGA
ACGAGTTGGTCCAGTTGCGTATAGATTGATTTTGCCCCCTGAACTTGAAAAGATTCACGACGTCT
TTCATGTTTCGATGCTTTGACGTTATAGATCCGATCCGTCACACGTGATTAATCCATCAGAAGTT
GAAATTCAATCTGACTTGAGTTATGAAGAAGAACCGATTCGTATCCTAGCTCGTGAAGTGAAAGA
GTTGCAAAACAAAAGGGTTCCGTTAGTAAAGGTGTTATGGCTCAAACACGGAGTCGAAGAAGCTA
CTTGGGAAACCGAGAATGCCATGAAAGAACGATACCCAAACTTATTTACCGGTAAGATTTTCGGG
GACGAAAATTTCTTAAGTGGGGGAGA
Found at i:27634428 original size:38 final size:38
Alignment explanation
Indices: 27634385--27634460 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
27634375 TTCATCCTTT
*
27634385 TTCATTTCTTTTGGCCGAAAATTCTAAGGAATGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
27634423 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
27634461 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:27635743 original size:40 final size:40
Alignment explanation
Indices: 27635649--27635792 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
27635639 TACTCGAATG
*
27635649 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
27635690 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
27635730 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
27635770 ATATCC-GGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
27635793 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 16 0.18
40 44 0.49
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:27641465 original size:53 final size:53
Alignment explanation
Indices: 27641257--27642295 Score: 1733
Period size: 53 Copynumber: 20.0 Consensus size: 53
27641247 TGAACATACG
* **
27641257 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGCGAACCCG--TATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
**
27641308 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG------CG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
* * * **
27641355 CATGTGTGATAAGGCCGAATGGCCACTGTGATGGATGTGAACATG------CG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27641402 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27641455 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27641508 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27641561 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27641614 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27641667 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27641720 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27641773 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27641826 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27641879 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27641932 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27641985 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27642038 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
27642091 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
** * * ***
27642144 TATGTGTGATAAGGCCGAATGGCCAATGTGATG-ATGATGAATGTGAACATGCG
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG-TGAACATGTATATATA
**
27642197 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC----ATCCATA
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
* *
27642246 TA--TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATAT
1 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATAT
27642296 GTGGTAAGGC
Statistics
Matches: 946, Mismatches: 30, Indels: 24
0.95 0.03 0.02
Matches are distributed among these distances:
47 123 0.13
49 3 0.00
51 46 0.05
52 3 0.00
53 768 0.81
54 3 0.00
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (53 bp):
TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATA
Found at i:27642381 original size:46 final size:46
Alignment explanation
Indices: 27642292--27642382 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
27642282 GAACATGAAT
* * * *
27642292 ATATGTGGTAAGGCCGAATGACTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGACTAATGCGAAACATGTACGAGATGG
* * * *
27642338 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGACTAATGCGAAACATGTACGAGATG
27642383 TGTATATATA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGACTAATGCGAAACATGTACGAGATGG
Found at i:27642637 original size:37 final size:37
Alignment explanation
Indices: 27642529--27642637 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
27642519 GGAAATATAT
*
27642529 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
27642566 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * *
27642603 TCTGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
27642638 CGTTTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Done.