Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65570391
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1216948 characters in sequence are not A, C, G, or T
File 94 of 203
Found at i:29647952 original size:16 final size:16
Alignment explanation
Indices: 29647933--29647963 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
29647923 AATACATAAC
*
29647933 TTTCATAACTTACATT
1 TTTCACAACTTACATT
29647949 TTTCACAACTTACAT
1 TTTCACAACTTACAT
29647964 AGCTTATAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTCACAACTTACATT
Found at i:29648028 original size:16 final size:16
Alignment explanation
Indices: 29648009--29648147 Score: 71
Period size: 16 Copynumber: 9.0 Consensus size: 16
29647999 TATATAACCG
*
29648009 ACATAACTAACATAAT
1 ACATAACTTACATAAT
*
29648025 ACATAGCTTACATAAT
1 ACATAACTTACATAAT
*
29648041 AC---AC-AAC-T--T
1 ACATAACTTACATAAT
* *
29648050 ACATAGCTTACATACT
1 ACATAACTTACATAAT
* *
29648066 AAATAACTTACATAAA
1 ACATAACTTACATAAT
* * *
29648082 ATACAACTTACATAGCT
1 ACATAACTTACATA-AT
*
29648099 CACATAA--TACGTAACTT
1 -ACATAACTTACATAA--T
*
29648116 ACATAACTTATATAAT
1 ACATAACTTACATAAT
29648132 ACATAACTTACATAAT
1 ACATAACTTACATAAT
29648148 TTACTTAATA
Statistics
Matches: 89, Mismatches: 21, Indels: 26
0.65 0.15 0.19
Matches are distributed among these distances:
9 3 0.03
11 1 0.01
12 3 0.03
13 3 0.03
14 1 0.01
16 68 0.76
17 1 0.01
18 9 0.10
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.29
Consensus pattern (16 bp):
ACATAACTTACATAAT
Found at i:29648038 original size:41 final size:41
Alignment explanation
Indices: 29647983--29648147 Score: 154
Period size: 41 Copynumber: 4.0 Consensus size: 41
29647973 CTGAACAACT
** * ** *
29647983 TACATAACAAACATAATATATAACCGACATAACTAACATAA
1 TACATAACTTACATAATATACAACTTACATAACTTACATAA
* * * *
29648024 TACATAGCTTACATAATACACAACTTACATAGCTTACATAC
1 TACATAACTTACATAATATACAACTTACATAACTTACATAA
* * * *
29648065 TAAATAACTTACATAAAATACAACTTACATAGCTCACATAA
1 TACATAACTTACATAATATACAACTTACATAACTTACATAA
* *
29648106 TACGTAACTTACATAACTTATATAA--TACATAACTTACATAA
1 TACATAACTTACATAA--TATACAACTTACATAACTTACATAA
29648147 T
1 T
29648148 TTACTTAATA
Statistics
Matches: 100, Mismatches: 22, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
41 95 0.95
43 5 0.05
ACGTcount: A:0.48, C:0.20, G:0.03, T:0.28
Consensus pattern (41 bp):
TACATAACTTACATAATATACAACTTACATAACTTACATAA
Found at i:29648073 original size:25 final size:25
Alignment explanation
Indices: 29648024--29648079 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
29648014 ACTAACATAA
*
29648024 TACATAGCTTACATAATACACAACT
1 TACATAGCTTACATAATAAACAACT
* *
29648049 TACATAGCTTACATACTAAATAACT
1 TACATAGCTTACATAATAAACAACT
29648074 TACATA
1 TACATA
29648080 AAATACAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.45, C:0.21, G:0.04, T:0.30
Consensus pattern (25 bp):
TACATAGCTTACATAATAAACAACT
Found at i:29648156 original size:25 final size:25
Alignment explanation
Indices: 29648068--29648159 Score: 87
Period size: 25 Copynumber: 3.7 Consensus size: 25
29648058 TACATACTAA
* * * *
29648068 ATAACTTACATAAAATACAACTTAC
1 ATAACTTATATAATACATAACTTAC
* * * *
29648093 ATAGCTCACATAATACGTAACTTAC
1 ATAACTTATATAATACATAACTTAC
29648118 ATAACTTATATAATACATAACTTAC
1 ATAACTTATATAATACATAACTTAC
*
29648143 ATAATTTACT-TAATACA
1 ATAACTTA-TATAATACA
29648160 GAAATATATA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
25 54 0.98
26 1 0.02
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (25 bp):
ATAACTTATATAATACATAACTTAC
Found at i:29650926 original size:43 final size:42
Alignment explanation
Indices: 29650864--29651133 Score: 362
Period size: 43 Copynumber: 6.3 Consensus size: 42
29650854 TATGCCAAAA
* *
29650864 TTAGCGGCGTTTGTGGGAGAAGCGCCACTAACGGTCTTGGTCT
1 TTAGCGGCGTTTGT-GGAGAAGCGCCGCTAAAGGTCTTGGTCT
* * *
29650907 TTAGCGGCATTTGTAGGAGAAGCGCCTCTAAAGGTCTTGGTTT
1 TTAGCGGCGTTTGT-GGAGAAGCGCCGCTAAAGGTCTTGGTCT
**
29650950 TTAGCGGCGTTTGTAAAAGAAGCGCCGCTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGT-GGAGAAGCGCCGCTAAAGGTCTTGGTCT
**
29650993 TTAGCGGCGTTTGTGGGAGAAGCGTAGCTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGT-GGAGAAGCGCCGCTAAAGGTCTTGGTCT
*
29651036 TTAGCGGCGTTTGTGGA-ATTAGCACCGCTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGTGGAGA--AGCGCCGCTAAAGGTCTTGGTCT
* *
29651079 TTAGCGGCGTTTGTGTGAAAAGCGCCGCTAAAGGTCTTGATCT
1 TTAGCGGCGTTTGTG-GAGAAGCGCCGCTAAAGGTCTTGGTCT
29651122 TTAGCGGCGTTT
1 TTAGCGGCGTTT
29651134 TTTTGTGGAA
Statistics
Matches: 203, Mismatches: 20, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
41 1 0.00
42 3 0.01
43 196 0.97
44 2 0.01
45 1 0.00
ACGTcount: A:0.19, C:0.18, G:0.32, T:0.31
Consensus pattern (42 bp):
TTAGCGGCGTTTGTGGAGAAGCGCCGCTAAAGGTCTTGGTCT
Found at i:29654213 original size:3 final size:3
Alignment explanation
Indices: 29654207--29654265 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
29654197 ATTTCAAAAA
29654207 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
29654255 AAG AAG AAG AA
1 AAG AAG AAG AA
29654266 ATTCTCGCTT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:29656563 original size:14 final size:14
Alignment explanation
Indices: 29656546--29656576 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
29656536 ACATAAGCAG
29656546 TCACTAAGGTTCAC
1 TCACTAAGGTTCAC
29656560 TCACTAAGGTTCAC
1 TCACTAAGGTTCAC
29656574 TCA
1 TCA
29656577 AAGCATTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (14 bp):
TCACTAAGGTTCAC
Found at i:29657852 original size:6 final size:6
Alignment explanation
Indices: 29657840--29657896 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
29657830 TGAAAAATAA
* * * *
29657840 AAAAAT AACAAT AAAAAT AAAAGT ACAAAT AAAAA- AAACAT AAAACAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT
*
29657888 AAAACT AAA
1 AAAAAT AAA
29657897 TAAATTCACT
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
5 4 0.10
6 30 0.75
7 6 0.15
ACGTcount: A:0.75, C:0.09, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:29666579 original size:21 final size:21
Alignment explanation
Indices: 29666541--29666619 Score: 68
Period size: 21 Copynumber: 3.6 Consensus size: 21
29666531 TTTTTTTGTT
* *
29666541 ATTATTCTTATTCTTGTTATG
1 ATTATTTTTATTATTGTTATG
* *
29666562 ATTATTTTTATTAGTGTTATC
1 ATTATTTTTATTATTGTTATG
* *
29666583 ATTCTTTGCACTATTATTGTTATTG
1 ATTATTT---TTATTATTGTTA-TG
29666608 ATTATTTTTATT
1 ATTATTTTTATT
29666620 TTATTTTTAT
Statistics
Matches: 44, Mismatches: 10, Indels: 7
0.72 0.16 0.11
Matches are distributed among these distances:
21 23 0.52
22 4 0.09
24 10 0.23
25 7 0.16
ACGTcount: A:0.22, C:0.08, G:0.09, T:0.62
Consensus pattern (21 bp):
ATTATTTTTATTATTGTTATG
Found at i:29674738 original size:20 final size:20
Alignment explanation
Indices: 29674700--29674738 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
29674690 GCTACTCATA
*
29674700 TTTTTAAAAACTTATCAGAG
1 TTTTTAAAAACATATCAGAG
29674720 TTTTTAAAACACATA-CAGA
1 TTTTTAAAA-ACATATCAGA
29674739 ATCGGTGCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.36
Consensus pattern (20 bp):
TTTTTAAAAACATATCAGAG
Found at i:29678047 original size:19 final size:19
Alignment explanation
Indices: 29678013--29678053 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
29678003 TCAGTTTCAG
29678013 TTTCATTTTTAATTTTCTT
1 TTTCATTTTTAATTTTCTT
29678032 TTTC-TTTTTAATTTTTCTT
1 TTTCATTTTTAA-TTTTCTT
29678051 TTT
1 TTT
29678054 TTAGTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTCATTTTTAATTTTCTT
Found at i:29678090 original size:29 final size:29
Alignment explanation
Indices: 29678032--29678097 Score: 82
Period size: 27 Copynumber: 2.3 Consensus size: 29
29678022 TAATTTTCTT
* *
29678032 TTTCTTTTTAATTTTTCTTTTTTTAGTTA
1 TTTCGTTTTAATTTTTATTTTTTTAGTTA
29678061 TTT-GTTTT-ATTTTTATTTTTTTAGACTTA
1 TTTCGTTTTAATTTTTATTTTTTTAG--TTA
29678090 TTTCGTTT
1 TTTCGTTT
29678098 ATTATCTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 15 0.47
28 4 0.12
29 9 0.28
30 4 0.12
ACGTcount: A:0.14, C:0.06, G:0.06, T:0.74
Consensus pattern (29 bp):
TTTCGTTTTAATTTTTATTTTTTTAGTTA
Found at i:29686049 original size:27 final size:27
Alignment explanation
Indices: 29686019--29686084 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
29686009 CCTCACGTGG
29686019 TAAAATGACTGTTATACCCCTATGCTA
1 TAAAATGACTGTTATACCCCTATGCTA
* * *
29686046 TAAAATGACTATTATTCCCCTATGTTA
1 TAAAATGACTGTTATACCCCTATGCTA
29686073 TAAAATGACTGT
1 TAAAATGACTGT
29686085 ATGATTTATG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (27 bp):
TAAAATGACTGTTATACCCCTATGCTA
Found at i:29686404 original size:34 final size:32
Alignment explanation
Indices: 29686365--29686428 Score: 110
Period size: 34 Copynumber: 1.9 Consensus size: 32
29686355 TGTGACTATC
29686365 ACTATAATGGGCTAAGGCCCACACTGATACTGAT
1 ACTATAATGGGCTAAGGCCCA-ACTGA-ACTGAT
29686399 ACTATAATGGGCTAAGGCCCAACTGAACTG
1 ACTATAATGGGCTAAGGCCCAACTGAACTG
29686429 GACTATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 4 0.13
33 5 0.17
34 21 0.70
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (32 bp):
ACTATAATGGGCTAAGGCCCAACTGAACTGAT
Found at i:29693526 original size:27 final size:27
Alignment explanation
Indices: 29693493--29693669 Score: 254
Period size: 27 Copynumber: 6.6 Consensus size: 27
29693483 CCCTAAACTA
*
29693493 TTATAAAATGACTGTTATG-CCCTCACG
1 TTATAAAATGACTGTTATGCCCCT-ATG
*
29693520 -TAGTAAAATGACTGTTATG-CCCTCACG
1 TTA-TAAAATGACTGTTATGCCCCT-ATG
29693547 -TAGTAAAATGACTGTTATGCCCCTATG
1 TTA-TAAAATGACTGTTATGCCCCTATG
* *
29693574 CTATAAAATGACTGTTAAGCCCCTATG
1 TTATAAAATGACTGTTATGCCCCTATG
29693601 TTATAAAATGACTGTTATGCCCCTATG
1 TTATAAAATGACTGTTATGCCCCTATG
29693628 TTATAAAATGACTGTTATGCCCCTATG
1 TTATAAAATGACTGTTATGCCCCTATG
29693655 TTATAAAATGACTGT
1 TTATAAAATGACTGT
29693670 ATGATTTATG
Statistics
Matches: 143, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
26 2 0.01
27 135 0.94
28 6 0.04
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (27 bp):
TTATAAAATGACTGTTATGCCCCTATG
Found at i:29695933 original size:24 final size:26
Alignment explanation
Indices: 29695900--29695952 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
29695890 TTTAATTATA
29695900 ATTTAATATAAACACAT-ATAATATT
1 ATTTAATATAAACACATAATAATATT
*
29695925 ATTT-ATATAAACATATAAATAATATT
1 ATTTAATATAAACACAT-AATAATATT
29695951 AT
1 AT
29695953 ACTTTTTTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 11 0.44
25 4 0.16
26 10 0.40
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (26 bp):
ATTTAATATAAACACATAATAATATT
Found at i:29698003 original size:353 final size:353
Alignment explanation
Indices: 29697357--29698062 Score: 1394
Period size: 353 Copynumber: 2.0 Consensus size: 353
29697347 TTTTTCTTTT
*
29697357 TTATGATTACTATGTAAGAGAAAATATGTTATGGAAGTACAAAGTACCATCTTCAAACTTCAATG
1 TTATGATTACCATGTAAGAGAAAATATGTTATGGAAGTACAAAGTACCATCTTCAAACTTCAATG
29697422 ACGATCTAGTTCAGAAACCAAAGCCTAATTGACAGAGACTTGGACGGTTTCTCTTTTAGATTGAT
66 ACGATCTAGTTCAGAAACCAAAGCCTAATTGACAGAGACTTGGACGGTTTCTCTTTTAGATTGAT
29697487 TAGAGAAGGATGATGACTTCGACTTCGTTTCTCTCTCCCTGATGGAATGCATAGACAATGGAGGT
131 TAGAGAAGGATGATGACTTCGACTTCGTTTCTCTCTCCCTGATGGAATGCATAGACAATGGAGGT
*
29697552 GCCGATGGCATTGGAAGAGAGATGGAATAGCTACTAAGCATGAGAACCGCAGAGGCCATGGTTGG
196 GCCGATGGCATTGGAAGAGAGATGGAATAGCTACTAAGCATGAGAACCGCAGAGGCCATGGTAGG
29697617 TCTATAAGCAGTATCTTCTTGAACACAAAGCAACCCAAGCTGGATACATCTCGTTATTTCACTTC
261 TCTATAAGCAGTATCTTCTTGAACACAAAGCAACCCAAGCTGGATACATCTCGTTATTTCACTTC
29697682 TCGAGCCATCCCTCAGAATTGGATCTAC
326 TCGAGCCATCCCTCAGAATTGGATCTAC
29697710 TTATGATTACCATGTAAGAGAAAATATGTTATGGAAGTACAAAGTACCATCTTCAAACTTCAATG
1 TTATGATTACCATGTAAGAGAAAATATGTTATGGAAGTACAAAGTACCATCTTCAAACTTCAATG
29697775 ACGATCTAGTTCAGAAACCAAAGCCTAATTGACAGAGACTTGGACGGTTTCTCTTTTAGATTGAT
66 ACGATCTAGTTCAGAAACCAAAGCCTAATTGACAGAGACTTGGACGGTTTCTCTTTTAGATTGAT
29697840 TAGAGAAGGATGATGACTTCGACTTCGTTTCTCTCTCCCTGATGGAATGCATAGACAATGGAGGT
131 TAGAGAAGGATGATGACTTCGACTTCGTTTCTCTCTCCCTGATGGAATGCATAGACAATGGAGGT
29697905 GCCGATGGCATTGGAAGAGAGATGGAATAGCTACTAAGCATGAGAACCGCAGAGGCCATGGTAGG
196 GCCGATGGCATTGGAAGAGAGATGGAATAGCTACTAAGCATGAGAACCGCAGAGGCCATGGTAGG
29697970 TCTATAAGCAGTATCTTCTTGAACACAAAGCAACCCAAGCTGGATACATCTCGTTATTTCACTTC
261 TCTATAAGCAGTATCTTCTTGAACACAAAGCAACCCAAGCTGGATACATCTCGTTATTTCACTTC
29698035 TCGAGCCATCCCTCAGAATTGGATCTAC
326 TCGAGCCATCCCTCAGAATTGGATCTAC
29698063 AACTTCCAAA
Statistics
Matches: 351, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
353 351 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (353 bp):
TTATGATTACCATGTAAGAGAAAATATGTTATGGAAGTACAAAGTACCATCTTCAAACTTCAATG
ACGATCTAGTTCAGAAACCAAAGCCTAATTGACAGAGACTTGGACGGTTTCTCTTTTAGATTGAT
TAGAGAAGGATGATGACTTCGACTTCGTTTCTCTCTCCCTGATGGAATGCATAGACAATGGAGGT
GCCGATGGCATTGGAAGAGAGATGGAATAGCTACTAAGCATGAGAACCGCAGAGGCCATGGTAGG
TCTATAAGCAGTATCTTCTTGAACACAAAGCAACCCAAGCTGGATACATCTCGTTATTTCACTTC
TCGAGCCATCCCTCAGAATTGGATCTAC
Found at i:29701005 original size:8 final size:9
Alignment explanation
Indices: 29700992--29701089 Score: 63
Period size: 9 Copynumber: 10.2 Consensus size: 9
29700982 ATAATAAATA
29700992 TTTTT-ATT
1 TTTTTAATT
29701000 TTTTTAATT
1 TTTTTAATT
29701009 TTTTTAATT
1 TTTTTAATT
***
29701018 TTAAAATATAT
1 TTTTTA-AT-T
*
29701029 TTTTTAAAT
1 TTTTTAATT
*
29701038 TTTTTAAAT
1 TTTTTAATT
**
29701047 TTTAAAATT
1 TTTTTAATT
29701056 TTTTTAAAATAAT
1 TTTTT--AAT--T
29701069 TTTTTAATT
1 TTTTTAATT
29701078 TTTTTAAATT
1 TTTTT-AATT
29701088 TT
1 TT
29701090 AAAATATTTT
Statistics
Matches: 70, Mismatches: 12, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
8 5 0.07
9 40 0.57
10 9 0.13
11 10 0.14
13 6 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTTTAATT
Found at i:29701032 original size:30 final size:29
Alignment explanation
Indices: 29700995--29701079 Score: 109
Period size: 30 Copynumber: 2.9 Consensus size: 29
29700985 ATAAATATTT
*
29700995 TTATTTTTTTAATTTTTTTAATTTTAAAA
1 TTATTTTTTAAATTTTTTTAATTTTAAAA
*
29701024 TATATTTTTTAAATTTTTTAAATTTTAAAA
1 T-TATTTTTTAAATTTTTTTAATTTTAAAA
*
29701054 TT-TTTTTAAAATAATTTTTTAATTTT
1 TTATTTTTTAAAT--TTTTTTAATTTT
29701080 TTTAAATTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
28 9 0.18
29 2 0.04
30 38 0.78
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (29 bp):
TTATTTTTTAAATTTTTTTAATTTTAAAA
Found at i:29701071 original size:40 final size:40
Alignment explanation
Indices: 29701016--29701121 Score: 167
Period size: 40 Copynumber: 2.6 Consensus size: 40
29701006 ATTTTTTTAA
*
29701016 TTTTAAAATATATTTTTTAAATTTTTTAAATTTTAAAATTT
1 TTTTAAAATA-ATTTTTTAAATTTTTTAAATTTTAAAATAT
*
29701057 TTTTAAAATAATTTTTTAATTTTTTTAAATTTTAAAATAT
1 TTTTAAAATAATTTTTTAAATTTTTTAAATTTTAAAATAT
* *
29701097 TTTTAAAATACTTTTTTTAATTTTT
1 TTTTAAAATAATTTTTTAAATTTTT
29701122 GTTTTAATTT
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
40 50 0.83
41 10 0.17
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (40 bp):
TTTTAAAATAATTTTTTAAATTTTTTAAATTTTAAAATAT
Found at i:29701106 original size:11 final size:11
Alignment explanation
Indices: 29701046--29701112 Score: 54
Period size: 11 Copynumber: 6.4 Consensus size: 11
29701036 ATTTTTTAAA
*
29701046 TTTTAAAATTT
1 TTTTAAAATAT
29701057 TTTTAAAATAAT
1 TTTTAAAAT-AT
*
29701069 TTTT-TAAT-T
1 TTTTAAAATAT
*
29701078 TTTT-TAA-A-
1 TTTTAAAATAT
29701086 TTTTAAAATAT
1 TTTTAAAATAT
29701097 TTTTAAAATACT
1 TTTTAAAATA-T
29701109 TTTT
1 TTTT
29701113 TTAATTTTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
8 4 0.09
9 10 0.21
10 1 0.02
11 22 0.47
12 10 0.21
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:29701623 original size:48 final size:49
Alignment explanation
Indices: 29701531--29701629 Score: 148
Period size: 48 Copynumber: 2.0 Consensus size: 49
29701521 CTTTTTTTGG
* *
29701531 AGGCACCAACTTTCAATGAATTATTTTTTAGTGTTAATTCTAGATGTGA
1 AGGCACCAACTTCCAATGAATTATCTTTTAGTGTTAATTCTAGATGTGA
*
29701580 AGGCACCAACTTCCAATGGATTA-CTTTTAGTGTTAACTT-TAGATGTGA
1 AGGCACCAACTTCCAATGAATTATCTTTTAGTGTTAA-TTCTAGATGTGA
29701628 AG
1 AG
29701630 ACACTAATAT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
48 23 0.50
49 23 0.50
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.37
Consensus pattern (49 bp):
AGGCACCAACTTCCAATGAATTATCTTTTAGTGTTAATTCTAGATGTGA
Found at i:29704199 original size:26 final size:27
Alignment explanation
Indices: 29704147--29704227 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
29704137 AGACTATCCA
*
29704147 TTCATAATTCACCATAAAAGCTTTTCT
1 TTCATAATTCACCACAAAAGCTTTTCT
*
29704174 TTCATGATTCACCAC-AAAGAC-TTTCTT
1 TTCATAATTCACCACAAAAG-CTTTTC-T
* * * *
29704201 TTCATATTTCGCTACAAAGGCTTTTCT
1 TTCATAATTCACCACAAAAGCTTTTCT
29704228 CTTGTATTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
26 8 0.19
27 28 0.65
28 7 0.16
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.41
Consensus pattern (27 bp):
TTCATAATTCACCACAAAAGCTTTTCT
Found at i:29704262 original size:27 final size:26
Alignment explanation
Indices: 29704186--29704264 Score: 79
Period size: 27 Copynumber: 3.0 Consensus size: 26
29704176 CATGATTCAC
* *
29704186 CACAAAGACTTTCTTTTCATATTTCG
1 CACAAAGGCTTTCCTTTCATATTTCG
* * *
29704212 CTACAAAGGCTTTTCTCTT-GTATTTTG
1 C-ACAAAGGCTTTCCT-TTCATATTTCG
29704239 TCACAAAGGCTTTCCTTTCATATTTC
1 -CACAAAGGCTTTCCTTTCATATTTC
29704265 ACCAAAAATA
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
26 3 0.07
27 35 0.85
28 3 0.07
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.44
Consensus pattern (26 bp):
CACAAAGGCTTTCCTTTCATATTTCG
Found at i:29705031 original size:15 final size:16
Alignment explanation
Indices: 29705011--29705040 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
29705001 GTCCCATAAA
29705011 TTAAAAAT-ATATATC
1 TTAAAAATAATATATC
29705026 TTAAAAATAATATAT
1 TTAAAAATAATATAT
29705041 ATATATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
TTAAAAATAATATATC
Found at i:29705769 original size:30 final size:30
Alignment explanation
Indices: 29705697--29705769 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
29705687 TGCAACTAAG
* **
29705697 TTAGGGGCTTAATTAAATTTTTTAAAAATT
1 TTAGGGGCTTAATTAAAATCCTTAAAAATT
** * * *
29705727 TTAATGGTTTAATTAAAATCCTTAGAACTT
1 TTAGGGGCTTAATTAAAATCCTTAAAAATT
29705757 TTAGGGGCTTAAT
1 TTAGGGGCTTAAT
29705770 GAGGATCTCC
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (30 bp):
TTAGGGGCTTAATTAAAATCCTTAAAAATT
Found at i:29709367 original size:20 final size:20
Alignment explanation
Indices: 29709342--29709382 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
29709332 GTATTTAGCA
*
29709342 AAGTTACGGTTTTCCAACAC
1 AAGTTACGGTTTTCAAACAC
*
29709362 AAGTTATGGTTTTCAAACAC
1 AAGTTACGGTTTTCAAACAC
29709382 A
1 A
29709383 CTACCATGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.32
Consensus pattern (20 bp):
AAGTTACGGTTTTCAAACAC
Found at i:29712258 original size:34 final size:34
Alignment explanation
Indices: 29712215--29712308 Score: 131
Period size: 34 Copynumber: 2.8 Consensus size: 34
29712205 ATTTAAAAAA
*
29712215 TAATTAAATTAAGTTTTAGAGGTTTTAAGTAAA-T
1 TAATTAAATTAAGGTTTAGAGGTTTTAAG-AAAGT
*
29712249 TAATTAAATTAAGGTTTAGAGTTTTTAAGAAAGT
1 TAATTAAATTAAGGTTTAGAGGTTTTAAGAAAGT
*
29712283 TAATTAAATTAGGGTTT--AGGTTTTAA
1 TAATTAAATTAAGGTTTAGAGGTTTTAA
29712309 AAAAATAATT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
32 8 0.15
33 3 0.05
34 44 0.80
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (34 bp):
TAATTAAATTAAGGTTTAGAGGTTTTAAGAAAGT
Found at i:29712627 original size:126 final size:126
Alignment explanation
Indices: 29712402--29712794 Score: 504
Period size: 126 Copynumber: 3.1 Consensus size: 126
29712392 GGATTTTATT
* * * * *
29712402 TTTTTCTACACTAGTT-TCTGAAAAATTAATTTTGAGAAGATGGTTATGAAAAGATAATGTCAAA
1 TTTTTCTACACTAGTTCT-TGAAAAAATAATTTTGAGAAGACGGTTATGAAAAAATAGTGTTAAA
* * * *
29712466 AACGCTTCAAACAGGATGTACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
65 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTC
* * *
29712528 TTTTTCTACATTAATTCTTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTTAAAA
1 TTTTTCTACACTAGTTCTTGAAAAAATAATTTTGAGAAGACGGTTATGAAAAAATAGTGTTAAAA
* * * *
29712593 ATGCTTCAAGCAGGATACATTGTCAACAAAATTACTGAAAAAAACTCCCACGTGGATGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTC
* * * * *
29712654 TTTTT-TACAGTAGTTCTTGAAAAAATAATTTTGCGAAGACGGTTTTGAAAAACTAGTG-TCAAA
1 TTTTTCTACACTAGTTCTTGAAAAAATAATTTTGAGAAGACGGTTATGAAAAAATAGTGTTAAAA
* * * *
29712717 ACGCTTCAAGCAGGAGGCACTATCAGCAACATTACTGAAAAAATCTCCCACGTGGATGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTC
* * *
29712778 CTTTTCTATAGTAGTTC
1 TTTTTCTACACTAGTTC
29712795 CTGCTTGGCC
Statistics
Matches: 233, Mismatches: 32, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
124 61 0.26
125 58 0.25
126 113 0.48
127 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (126 bp):
TTTTTCTACACTAGTTCTTGAAAAAATAATTTTGAGAAGACGGTTATGAAAAAATAGTGTTAAAA
ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAACTCCCACGTGGATGCTC
Found at i:29716338 original size:18 final size:18
Alignment explanation
Indices: 29716312--29716361 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
29716302 GACTAGAAAA
*
29716312 AGGAAACATATAAGAGTT
1 AGGATACATATAAGAGTT
29716330 AGGATACATATAAGAGTT
1 AGGATACATATAAGAGTT
29716348 AGGATACATATAAG
1 AGGATACATATAAG
29716362 TTTTGGAGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.48, C:0.06, G:0.22, T:0.24
Consensus pattern (18 bp):
AGGATACATATAAGAGTT
Found at i:29719513 original size:20 final size:21
Alignment explanation
Indices: 29719485--29719523 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
29719475 ATTAATTAAA
*
29719485 ATTACATAA-ATGAAAAAAAT
1 ATTAAATAATATGAAAAAAAT
*
29719505 ATTAAATAATATTAAAAAA
1 ATTAAATAATATGAAAAAA
29719524 TTGAAATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (21 bp):
ATTAAATAATATGAAAAAAAT
Found at i:29719529 original size:30 final size:31
Alignment explanation
Indices: 29719455--29719529 Score: 73
Period size: 30 Copynumber: 2.4 Consensus size: 31
29719445 CAATCTATTA
* *
29719455 TAAAAAATTCTAAAATAAAAATTAATTAAAAT
1 TAAAAAATT-GAAAATAAAAATTAAATAAAAT
* * *
29719487 TACATAAA-TGAAAA-AAATATTAAATAATAT
1 TA-AAAAATTGAAAATAAAAATTAAATAAAAT
29719517 TAAAAAATTGAAA
1 TAAAAAATTGAAA
29719530 TTAACCCTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
29 4 0.11
30 20 0.57
31 4 0.11
32 3 0.09
33 4 0.11
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (31 bp):
TAAAAAATTGAAAATAAAAATTAAATAAAAT
Found at i:29721137 original size:26 final size:26
Alignment explanation
Indices: 29721066--29721137 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 26
29721056 ATGTTCGTAT
*
29721066 AAAAGAAATTATAATT-TGAATAAATTG
1 AAAATAAA-TATAATTAT-AATAAATTG
* *
29721093 AAAATAAATATTATATATAATAATTTG
1 AAAATAAATATAAT-TATAATAAATTG
29721120 -AAATAAATCATAATTATA
1 AAAATAAAT-ATAATTATA
29721138 GTTAAAAAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 17 0.45
27 20 0.53
28 1 0.03
ACGTcount: A:0.57, C:0.01, G:0.06, T:0.36
Consensus pattern (26 bp):
AAAATAAATATAATTATAATAAATTG
Found at i:29722034 original size:6 final size:7
Alignment explanation
Indices: 29722019--29722043 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
29722009 ACCTAAACAG
29722019 AAAAGAA
1 AAAAGAA
29722026 AAAAGAA
1 AAAAGAA
29722033 AAAAGAA
1 AAAAGAA
29722040 AAAA
1 AAAA
29722044 AACCTAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:29723187 original size:16 final size:16
Alignment explanation
Indices: 29723168--29723203 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
29723158 TAAAATCTAT
*
29723168 ATAAATATTTAATTAA
1 ATAAAAATTTAATTAA
*
29723184 ATAAAAATTTAATTAG
1 ATAAAAATTTAATTAA
29723200 ATAA
1 ATAA
29723204 TGTATCCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
ATAAAAATTTAATTAA
Found at i:29723772 original size:21 final size:22
Alignment explanation
Indices: 29723731--29723773 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
29723721 AAAATGTTAC
29723731 TAAATTTATCATAAAAAAATTA
1 TAAATTTATCATAAAAAAATTA
29723753 TAAATTT-T-ATAAAAACAATTA
1 TAAATTTATCATAAAAA-AATTA
29723774 AATTAAAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 6 0.30
22 7 0.35
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (22 bp):
TAAATTTATCATAAAAAAATTA
Found at i:29729192 original size:38 final size:38
Alignment explanation
Indices: 29729114--29729194 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
29729104 TGAAAAATGT
* * *
29729114 CAAAAATCATAATTAACCCCAGTGCCAATGGGTCGAAA
1 CAAAAACCACAATTAACCCCAATGCCAATGGGTCGAAA
* * * *
29729152 CAAAAACCACAATTAACCCCAATGGCAATTGGTTGGAA
1 CAAAAACCACAATTAACCCCAATGCCAATGGGTCGAAA
29729190 CAAAA
1 CAAAA
29729195 TTATTAAAAG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.44, C:0.23, G:0.15, T:0.17
Consensus pattern (38 bp):
CAAAAACCACAATTAACCCCAATGCCAATGGGTCGAAA
Found at i:29729506 original size:339 final size:339
Alignment explanation
Indices: 29728848--29729681 Score: 1284
Period size: 339 Copynumber: 2.4 Consensus size: 339
29728838 AAAACCTGTA
*
29728848 AAAATATTAAAAAGATGGAGTGAGTTTAACTACACAGTAAGTAACTAGCATTTCCCTTGGTTGGG
1 AAAATATT-AAAAGATGGAGTGAGTTTAACTA-ACAG-AAGTAACTAGCATTTCCCTTGGTTGAG
* *
29728913 TTAAGCAAGCACAAAAGCATTTAAGCTAAATATCTAGTAAAAAATCCATAATTTTAAAATTTATG
63 TTAAGCAAGCACAAAAGCATTTAGGCTAAATATCTAGTAAAAAATCCATAATTGTAAAATTTATG
29728978 ATTATACCCACAATAAATAATTCAAAGCATATTCCGTGTCAAAACTGTGATAAAGACAAATCAAT
128 ATTATA-CCACAATAAATAATTCAAAGCATATTCCGTGTCAAAACTGTGATAAAGACAAATCAAT
* *
29729043 AATTTTTGAAATACTGATAGATAAAAAAATAACAACTCCATTTTTTCTCCCTTAACCTCGATGAA
192 AATTTTTGAAATACTAATAGATAAAAAAATAACAACTCCATTTTTTATCCCTTAACCTCGATGAA
* * *
29729108 AAATGTCAAAAATCATAATTAACCCCAGTGCCAATGGGTCGAAACAAAAACCACAATTAACCCCA
257 AAATATCAAAAACCATAATTAACCCCAGTGCCAATGAGTCGAAACAAAAACCACAATTAACCCCA
*
29729173 ATGGCAATTGGTTGGAAC
322 ATGACAATTGGTTGGAAC
* *
29729191 AAAATTATTAAAAGATAGAGTGAGTTTAACT-ACA-AAGTAACTAGCATTTCCCTTAGTTGAGTT
1 AAAA-TATTAAAAGATGGAGTGAGTTTAACTAACAGAAGTAACTAGCATTTCCCTTGGTTGAGTT
* * *
29729254 AAGCAAGCACAAAAGAATTTAGGCTAAATACCTAGTAAAAAATCCATAGTTGTAAAATTTATGAT
65 AAGCAAGCACAAAAGCATTTAGGCTAAATATCTAGTAAAAAATCCATAATTGTAAAATTTATGAT
* *
29729319 TATACCACAATAAATAATTCAAAGCATATTCCGTGTCAAAACTGTGATAAAGATAATTCAATAAT
130 TATACCACAATAAATAATTCAAAGCATATTCCGTGTCAAAACTGTGATAAAGACAAATCAATAAT
* * *
29729384 TTCTT-AAATACTAATAGATAAAAAAAATAACAACTCCCTTTTTTATCCTTTAACCTCGATGATA
195 TT-TTGAAATACTAATAGAT-AAAAAAATAACAACTCCATTTTTTATCCCTTAACCTCGATGAAA
* *
29729448 AATATCAAAAACCATAATTAACCCTAGTGGCAATGAGTCGAAACAAAAACCACAATTAACCCCAA
258 AATATCAAAAACCATAATTAACCCCAGTGCCAATGAGTCGAAACAAAAACCACAATTAACCCCAA
29729513 TGACAATTGGTTGGAAC
323 TGACAATTGGTTGGAAC
* * * * * *
29729530 AAGAATGTTAAAAGATGGAGTTAGTTTTACTACACAGTAAGTAACTAGAATTTCCTTTGGTTTAG
1 AA-AATATTAAAAGATGGAGTGAGTTTAACTA-ACAG-AAGTAACTAGCATTTCCCTTGGTTGAG
*
29729595 TTAAGCAAGCACAAAAGCA--TAGGCTAAATATTTAG-AAAAAATCCATAATTGTAAAATTTATG
63 TTAAGCAAGCACAAAAGCATTTAGGCTAAATATCTAGTAAAAAATCCATAATTGTAAAATTTATG
29729657 ATTATACCACAATAAATAATTCAAA
128 ATTATACCACAATAAATAATTCAAA
29729682 TTGTAACACC
Statistics
Matches: 450, Mismatches: 33, Indels: 19
0.90 0.07 0.04
Matches are distributed among these distances:
338 74 0.16
339 233 0.52
340 53 0.12
341 20 0.04
343 66 0.15
344 4 0.01
ACGTcount: A:0.43, C:0.16, G:0.12, T:0.28
Consensus pattern (339 bp):
AAAATATTAAAAGATGGAGTGAGTTTAACTAACAGAAGTAACTAGCATTTCCCTTGGTTGAGTTA
AGCAAGCACAAAAGCATTTAGGCTAAATATCTAGTAAAAAATCCATAATTGTAAAATTTATGATT
ATACCACAATAAATAATTCAAAGCATATTCCGTGTCAAAACTGTGATAAAGACAAATCAATAATT
TTTGAAATACTAATAGATAAAAAAATAACAACTCCATTTTTTATCCCTTAACCTCGATGAAAAAT
ATCAAAAACCATAATTAACCCCAGTGCCAATGAGTCGAAACAAAAACCACAATTAACCCCAATGA
CAATTGGTTGGAAC
Found at i:29731063 original size:27 final size:27
Alignment explanation
Indices: 29731033--29731210 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
29731023 ATATTGAGTC
* * * *
29731033 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
29731060 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
29731087 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
29731115 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
29731142 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
29731169 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
29731196 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
29731211 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:29731172 original size:82 final size:81
Alignment explanation
Indices: 29731054--29731209 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
29731044 TGCTATATAA
* *
29731054 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
29731119 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
29731136 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
29731200 CACTTAGTGC
65 CACTTAGTGC
29731210 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:29741874 original size:38 final size:38
Alignment explanation
Indices: 29741793--29741886 Score: 107
Period size: 38 Copynumber: 2.4 Consensus size: 38
29741783 GACAAATGTC
*
29741793 AAAACCACAATTAACCCCAGTGACAATGGGTCGAAACA
1 AAAACCACAATTAACCCCAATGACAATGGGTCGAAACA
* * * * * * *
29741831 TAAACCGCAATTAACCCCAATGATAATTGGTTGGAATA
1 AAAACCACAATTAACCCCAATGACAATGGGTCGAAACA
29741869 AAAACCACAATTCAACCC
1 AAAACCACAATT-AACCC
29741887 AGTGCCAATG
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
38 40 0.89
39 5 0.11
ACGTcount: A:0.44, C:0.26, G:0.13, T:0.18
Consensus pattern (38 bp):
AAAACCACAATTAACCCCAATGACAATGGGTCGAAACA
Found at i:29749477 original size:32 final size:32
Alignment explanation
Indices: 29749436--29749499 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
29749426 ATGAAAGACG
29749436 TTAGGCCATTTTTTTAGAGCACTTACTAGTAT
1 TTAGGCCATTTTTTTAGAGCACTTACTAGTAT
29749468 TTAGGCCATTTTTTTAGAGCACTTACTAGTAT
1 TTAGGCCATTTTTTTAGAGCACTTACTAGTAT
29749500 CTCGAGGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.44
Consensus pattern (32 bp):
TTAGGCCATTTTTTTAGAGCACTTACTAGTAT
Found at i:29753506 original size:28 final size:28
Alignment explanation
Indices: 29753447--29753506 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
29753437 CGGGTTGGCG
* * *
29753447 TGTGTTAGGCCGTGGGGCCACACGAGCG
1 TGTGTTAGGCCATAGGGCCACACGAGCA
*
29753475 TGTGTTAGGCCATAGGGCTACA-GTAGCA
1 TGTGTTAGGCCATAGGGCCACACG-AGCA
29753503 TGTG
1 TGTG
29753507 GGCTCATTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.04
28 26 0.96
ACGTcount: A:0.18, C:0.20, G:0.38, T:0.23
Consensus pattern (28 bp):
TGTGTTAGGCCATAGGGCCACACGAGCA
Found at i:29757085 original size:14 final size:14
Alignment explanation
Indices: 29757061--29757125 Score: 85
Period size: 14 Copynumber: 4.4 Consensus size: 14
29757051 TTCAAGTATT
*
29757061 TAAAGATGAAAATAA
1 TAAA-ATGAAAATAG
29757076 TAAAATGAAAATAG
1 TAAAATGAAAATAG
*
29757090 TAAAATAATAAAATAG
1 TAAAAT--GAAAATAG
29757106 TAAAATGAAAATAG
1 TAAAATGAAAATAG
29757120 TAAAAT
1 TAAAAT
29757126 AATTGAATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
14 28 0.62
15 4 0.09
16 13 0.29
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (14 bp):
TAAAATGAAAATAG
Found at i:29757094 original size:8 final size:8
Alignment explanation
Indices: 29757069--29757126 Score: 70
Period size: 8 Copynumber: 7.8 Consensus size: 8
29757059 TTTAAAGATG
*
29757069 AAAATAAT
1 AAAATAGT
29757077 AAAAT-G-
1 AAAATAGT
29757083 AAAATAGT
1 AAAATAGT
*
29757091 AAAATAAT
1 AAAATAGT
29757099 AAAATAGT
1 AAAATAGT
29757107 AAAAT-G-
1 AAAATAGT
29757113 AAAATAGT
1 AAAATAGT
29757121 AAAATA
1 AAAATA
29757127 ATTGAATAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
6 10 0.23
7 3 0.07
8 30 0.70
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (8 bp):
AAAATAGT
Found at i:29757094 original size:22 final size:22
Alignment explanation
Indices: 29757061--29757126 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
29757051 TTCAAGTATT
29757061 TAAAGATGAAAATAATAAAAT-G
1 TAAA-ATGAAAATAATAAAATAG
29757083 -AAAATAGTAAAATAATAAAATAG
1 TAAAAT-G-AAAATAATAAAATAG
*
29757106 TAAAATGAAAATAGTAAAATA
1 TAAAATGAAAATAATAAAATA
29757127 ATTGAATAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
20 2 0.05
21 4 0.10
22 26 0.67
23 2 0.05
24 5 0.13
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.23
Consensus pattern (22 bp):
TAAAATGAAAATAATAAAATAG
Found at i:29757103 original size:30 final size:30
Alignment explanation
Indices: 29757069--29757128 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
29757059 TTTAAAGATG
29757069 AAAATAATAAAATGAAAATAGTAAAATAAT
1 AAAATAATAAAATGAAAATAGTAAAATAAT
*
29757099 AAAATAGTAAAATGAAAATAGTAAAATAAT
1 AAAATAATAAAATGAAAATAGTAAAATAAT
29757129 TGAATAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.23
Consensus pattern (30 bp):
AAAATAATAAAATGAAAATAGTAAAATAAT
Found at i:29765490 original size:21 final size:21
Alignment explanation
Indices: 29765466--29765517 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
29765456 CATCTTAAAC
*
29765466 TTAAATTAAATAATAAAAATG
1 TTAAATTAAATAACAAAAATG
*
29765487 TTAAGA-TAAATAACATAAATG
1 TTAA-ATTAAATAACAAAAATG
29765508 TTAAAATTAA
1 TT-AAATTAA
29765518 TCAAATATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 20 0.77
22 6 0.23
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.33
Consensus pattern (21 bp):
TTAAATTAAATAACAAAAATG
Found at i:29785240 original size:103 final size:101
Alignment explanation
Indices: 29785063--29785256 Score: 257
Period size: 103 Copynumber: 1.9 Consensus size: 101
29785053 GAATTGACGA
* ** * **
29785063 ATAAGACCATGATTGGACCATGGCAATGTTTGGATGTAAGACCCTAGCTTGGCTATGGCATTTTA
1 ATAAGACCACGATTGGACCATGGCAATGTTACGATGTAAGACCATAGCTTGGCTATGGCATCCTA
29785128 ATGAAAAGACAATAACTGGGTTATGGCACTTTGAAC
66 ATGAAAAGACAATAACTGGGTTATGGCACTTTGAAC
*
29785164 ATAAGACCACGGTTGGACCATGGCAGTATGTATACG-TGTAAGACCATAGC-TGTGCTATGGCAT
1 ATAAGACCACGATTGGACCATGGCA--ATGT-TACGATGTAAGACCATAGCTTG-GCTATGGCAT
* *
29785227 CCTAATGATAAGACCATAACTGGGTTATGG
62 CCTAATGAAAAGACAATAACTGGGTTATGG
29785257 AAATAGTGTA
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
101 23 0.29
102 2 0.03
103 53 0.66
104 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (101 bp):
ATAAGACCACGATTGGACCATGGCAATGTTACGATGTAAGACCATAGCTTGGCTATGGCATCCTA
ATGAAAAGACAATAACTGGGTTATGGCACTTTGAAC
Found at i:29787392 original size:23 final size:22
Alignment explanation
Indices: 29787325--29787398 Score: 100
Period size: 21 Copynumber: 3.5 Consensus size: 22
29787315 CCTGATCAGT
* *
29787325 ATACGACACA-TAAGTGCCTGA
1 ATACGACACACGAGGTGCCTGA
29787346 A-ACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
29787366 ATACGACACACGAGGTGCCTGA
1 ATACGACACACGAGGTGCCTGA
29787388 TATACGACACA
1 -ATACGACACA
29787399 TAAAGTGNNN
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
20 9 0.19
21 28 0.60
23 10 0.21
ACGTcount: A:0.35, C:0.27, G:0.23, T:0.15
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:29787839 original size:3 final size:3
Alignment explanation
Indices: 29787831--29787859 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
29787821 CTTTATTCCT
29787831 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
29787860 TATTTTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:29788010 original size:11 final size:11
Alignment explanation
Indices: 29787994--29788035 Score: 57
Period size: 11 Copynumber: 3.5 Consensus size: 11
29787984 ATTTAAAATA
29787994 TAATAATAATT
1 TAATAATAATT
29788005 TAATAATACTAATT
1 TAAT-A-A-TAATT
29788019 TAATAATAATT
1 TAATAATAATT
29788030 TAATAA
1 TAATAA
29788036 CAGTTTTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 15 0.54
12 2 0.07
13 2 0.07
14 9 0.32
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (11 bp):
TAATAATAATT
Found at i:29788012 original size:14 final size:14
Alignment explanation
Indices: 29787993--29788028 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
29787983 TATTTAAAAT
29787993 ATAATAATAATTTA
1 ATAATAATAATTTA
*
29788007 ATAATACTAATTTA
1 ATAATAATAATTTA
29788021 ATAATAAT
1 ATAATAAT
29788029 TTAATAACAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAATAATAATTTA
Found at i:29792722 original size:23 final size:21
Alignment explanation
Indices: 29792649--29792713 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
29792639 CCTGATCAGT
* *
29792649 ATACGACACA-TAAGTGCCTG
1 ATACGACACACGAGGTGCCTG
*
29792669 AAACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
29792690 ATACGACACACGAGGTGCCTG
1 ATACGACACACGAGGTGCCTG
29792711 ATA
1 ATA
29792714 TATGACACAT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
20 9 0.22
21 31 0.77
ACGTcount: A:0.34, C:0.26, G:0.25, T:0.15
Consensus pattern (21 bp):
ATACGACACACGAGGTGCCTG
Found at i:29793913 original size:3 final size:3
Alignment explanation
Indices: 29793898--29793935 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
29793888 TATTCCTAGT
*
29793898 TAA TAA TAC TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
29793936 TATTTTAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:29794086 original size:11 final size:11
Alignment explanation
Indices: 29794070--29794111 Score: 57
Period size: 11 Copynumber: 3.5 Consensus size: 11
29794060 ATTTAAAATA
29794070 TAATAATAATT
1 TAATAATAATT
29794081 TAATAATACTAATT
1 TAAT-A-A-TAATT
29794095 TAATAATAATT
1 TAATAATAATT
29794106 TAATAA
1 TAATAA
29794112 CATTTTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 15 0.54
12 2 0.07
13 2 0.07
14 9 0.32
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (11 bp):
TAATAATAATT
Found at i:29794088 original size:14 final size:14
Alignment explanation
Indices: 29794069--29794104 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
29794059 TATTTAAAAT
29794069 ATAATAATAATTTA
1 ATAATAATAATTTA
*
29794083 ATAATACTAATTTA
1 ATAATAATAATTTA
29794097 ATAATAAT
1 ATAATAAT
29794105 TTAATAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAATAATAATTTA
Found at i:29796088 original size:30 final size:30
Alignment explanation
Indices: 29796052--29796154 Score: 118
Period size: 30 Copynumber: 3.5 Consensus size: 30
29796042 GTGTTTTTAA
*
29796052 AAAATTACATTTTGACCCCTAAACTTTTTT
1 AAAATTACATTTTGACCCCTAAACTTTCTT
*
29796082 AAAATTACATTTTAACCCCTAAACTTTCTT
1 AAAATTACATTTTGACCCCTAAACTTTCTT
* * * * **
29796112 AAAATTATAATTTGACCTC-AAATTTTCCC
1 AAAATTACATTTTGACCCCTAAACTTTCTT
*
29796141 AAAATTACACTTTG
1 AAAATTACATTTTG
29796155 TCCCTAGAAG
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
29 19 0.31
30 43 0.69
ACGTcount: A:0.37, C:0.20, G:0.03, T:0.40
Consensus pattern (30 bp):
AAAATTACATTTTGACCCCTAAACTTTCTT
Found at i:29796519 original size:21 final size:21
Alignment explanation
Indices: 29796488--29796528 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
29796478 TGGGGTTATT
29796488 GAAAATAGAAGAGAAAAAAAGG
1 GAAAATAGAAGA-AAAAAAAGG
*
29796510 GAAAA-AGAAGAAAAGAAAG
1 GAAAATAGAAGAAAAAAAAG
29796529 AAAGGAGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.71, C:0.00, G:0.27, T:0.02
Consensus pattern (21 bp):
GAAAATAGAAGAAAAAAAAGG
Found at i:29796548 original size:23 final size:21
Alignment explanation
Indices: 29796517--29796560 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
29796507 AGGGAAAAAG
29796517 AAGAAAAGAAAGAAAGGAGAGAA
1 AAGAAAAGAAA-AAA-GAGAGAA
*
29796540 AAGAGAAGAAAAAAGAGAGAA
1 AAGAAAAGAAAAAAGAGAGAA
29796561 GAGGAGAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.35
22 3 0.15
23 10 0.50
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (21 bp):
AAGAAAAGAAAAAAGAGAGAA
Found at i:29796556 original size:19 final size:19
Alignment explanation
Indices: 29796511--29796563 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
29796501 AAAAAAAGGG
29796511 AAAAAGAAGAAAAGA-AAGA
1 AAAAAG-AGAAAAGAGAAGA
**
29796530 AAGGAGAGAAAAGAGAAGA
1 AAAAAGAGAAAAGAGAAGA
*
29796549 AAAAAGAGAGAAGAG
1 AAAAAGAGAAAAGAG
29796564 GAGAGGAAGA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 8 0.29
19 20 0.71
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAAAAGAGAAAAGAGAAGA
Found at i:29796670 original size:21 final size:19
Alignment explanation
Indices: 29796646--29796685 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
29796636 GCCCTGAAGT
29796646 GAAGAAGAAGAAGAAAGAAAG
1 GAAGAAGAAGAA-AAA-AAAG
29796667 GAAGAAGAAGAAAAAAAAG
1 GAAGAAGAAGAAAAAAAAG
29796686 AAAAATGGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 3 0.16
21 12 0.63
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
GAAGAAGAAGAAAAAAAAG
Found at i:29796686 original size:15 final size:17
Alignment explanation
Indices: 29796647--29796687 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
29796637 CCCTGAAGTG
29796647 AAGAAGAAGAAGAAAGA
1 AAGAAGAAGAAGAAAGA
29796664 AAGGAAGAAGAAGAAA-A
1 AA-GAAGAAGAAGAAAGA
29796681 AA-AAGAA
1 AAGAAGAA
29796688 AAATGGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 5 0.22
17 5 0.22
18 13 0.57
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (17 bp):
AAGAAGAAGAAGAAAGA
Found at i:29796701 original size:46 final size:45
Alignment explanation
Indices: 29796650--29796754 Score: 110
Period size: 46 Copynumber: 2.3 Consensus size: 45
29796640 TGAAGTGAAG
* *
29796650 AAGAAG-AAGAAAGAAAGGAAGAAGAAGAAAA-AAAA-GAAAAATGGGA
1 AAGAAGAAAGAAA-AAAGAAAGAA-AA-AAAAGAAAAGGAAAAA-AGGA
*
29796696 AAGAAGAAAGTAAAAAGAAAGAAAAAAAAGAAAAGGAAAAAAGGA
1 AAGAAGAAAGAAAAAAGAAAGAAAAAAAAGAAAAGGAAAAAAGGA
*
29796741 AAGAA-AAATAAAAA
1 AAGAAGAAAGAAAAA
29796755 TAGTTGGGTC
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
44 11 0.22
45 14 0.27
46 21 0.41
47 5 0.10
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (45 bp):
AAGAAGAAAGAAAAAAGAAAGAAAAAAAAGAAAAGGAAAAAAGGA
Found at i:29796715 original size:11 final size:10
Alignment explanation
Indices: 29796694--29796748 Score: 53
Period size: 9 Copynumber: 5.6 Consensus size: 10
29796684 AGAAAAATGG
29796694 GAAAGAAGAAA
1 GAAA-AAGAAA
29796705 GTAAAAAGAAA
1 G-AAAAAGAAA
29796716 GAAAAA-AAA
1 GAAAAAGAAA
*
29796725 G-AAAAGGAA
1 GAAAAAGAAA
*
29796734 -AAAAGGAAA
1 GAAAAAGAAA
29796743 GAAAAA
1 GAAAAA
29796749 TAAAAATAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
8 4 0.11
9 12 0.33
10 9 0.25
11 8 0.22
12 3 0.08
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (10 bp):
GAAAAAGAAA
Found at i:29796725 original size:27 final size:27
Alignment explanation
Indices: 29796695--29796748 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
29796685 GAAAAATGGG
*
29796695 AAAGAAGAAAGTAAAAA-GAAAGAAAAA
1 AAAGAA-AAAGAAAAAAGGAAAGAAAAA
*
29796722 AAAGAAAAGGAAAAAAGGAAAGAAAAA
1 AAAGAAAAAGAAAAAAGGAAAGAAAAA
29796749 TAAAAATAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (27 bp):
AAAGAAAAAGAAAAAAGGAAAGAAAAA
Found at i:29796730 original size:14 final size:13
Alignment explanation
Indices: 29796707--29796748 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
29796697 AGAAGAAAGT
29796707 AAAAAGAAAGAAA
1 AAAAAGAAAGAAA
*
29796720 AAAAAGAAAAGGAA
1 AAAAAG-AAAGAAA
*
29796734 AAAAGGAAAGAAA
1 AAAAAGAAAGAAA
29796747 AA
1 AA
29796749 TAAAAATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAGAAA
Found at i:29796730 original size:18 final size:17
Alignment explanation
Indices: 29796647--29796730 Score: 53
Period size: 18 Copynumber: 4.5 Consensus size: 17
29796637 CCCTGAAGTG
*
29796647 AAGAAGAAGAAGAAAGAA
1 AAGAA-AAGAAGAAAAAA
*
29796665 AGGAAGAAGAAGAAAAAA
1 AAGAA-AAGAAGAAAAAA
*
29796683 AAGAAAA-ATGGGAAAGAAGA
1 AAGAAAAGA--AGAAA-AA-A
29796703 AAGTAAAAAGAAAGAAAAAA
1 AAG--AAAAG-AAGAAAAAA
29796723 AAGAAAAG
1 AAGAAAAG
29796731 GAAAAAAGGA
Statistics
Matches: 53, Mismatches: 5, Indels: 16
0.72 0.07 0.22
Matches are distributed among these distances:
16 1 0.02
17 2 0.04
18 29 0.55
19 2 0.04
20 8 0.15
21 2 0.04
22 8 0.15
24 1 0.02
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (17 bp):
AAGAAAAGAAGAAAAAA
Found at i:29797355 original size:24 final size:25
Alignment explanation
Indices: 29797309--29797356 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
29797299 AAGCATTTTT
*
29797309 TTATTTTGTATTTATATTTTTAATG
1 TTATTTTATATTTATATTTTTAATG
29797334 TTATTTTAT-TTTAT-TTTATTAAT
1 TTATTTTATATTTATATTT-TTAAT
29797357 TTAAATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 3 0.14
24 10 0.48
25 8 0.38
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (25 bp):
TTATTTTATATTTATATTTTTAATG
Found at i:29807038 original size:50 final size:50
Alignment explanation
Indices: 29806980--29807111 Score: 133
Period size: 50 Copynumber: 2.6 Consensus size: 50
29806970 TATTGAGGTT
*
29806980 ATGAGAGGTCCCATGTAAGACCA-ATTCTGGGACACGACATTGGAACCGAG
1 ATGAGAGGTCCCATGTAAGACCATA-TCTGGGACACGACATGGGAACCGAG
* * * * ** * *
29807030 ATGAGAGGTCACC-CGTAAGACCATGTCTCGGACATGGGATGGGCACCGAT
1 ATGAGAGGTC-CCATGTAAGACCATATCTGGGACACGACATGGGAACCGAG
**
29807080 ATGAGAACTCCCATGTAAGACCATATCTGGGA
1 ATGAGAGGTCCCATGTAAGACCATATCTGGGA
29807112 TATGGCATTG
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
49 2 0.03
50 61 0.94
51 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.19
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATATCTGGGACACGACATGGGAACCGAG
Found at i:29807146 original size:49 final size:50
Alignment explanation
Indices: 29807044--29807174 Score: 149
Period size: 49 Copynumber: 2.6 Consensus size: 50
29807034 GAGGTCACCC
* * * * * *
29807044 GTAAGACCATGTCTCGGACATGGGATGGGCACCGATATGAGAACTCCCAT
1 GTAAGACCATGTCTGGGATATGGCATTGGCAACGATAGGAGAACTCCCAT
*
29807094 GTAAGACCATATCTGGGATATGGCATTGGCAAC-ATAGGA-AACATCCCAT
1 GTAAGACCATGTCTGGGATATGGCATTGGCAACGATAGGAGAAC-TCCCAT
* * *
29807143 GTAAGACCTTGTCTGGCATATGGCTTTGGCAA
1 GTAAGACCATGTCTGGGATATGGCATTGGCAA
29807175 GTTATTATCA
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
48 3 0.04
49 39 0.57
50 27 0.39
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGATATGGCATTGGCAACGATAGGAGAACTCCCAT
Found at i:29807333 original size:20 final size:20
Alignment explanation
Indices: 29807296--29807333 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
29807286 TAAGTAAGCA
*
29807296 AGTAAGTAAACAATTAAGTG
1 AGTAAGTAAACAAGTAAGTG
*
29807316 AGTAAGTAAAGAAGTAAG
1 AGTAAGTAAACAAGTAAG
29807334 CAAAGACCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.24, T:0.21
Consensus pattern (20 bp):
AGTAAGTAAACAAGTAAGTG
Found at i:29814298 original size:50 final size:49
Alignment explanation
Indices: 29814240--29814426 Score: 207
Period size: 50 Copynumber: 3.8 Consensus size: 49
29814230 TATTGAGGTT
*
29814240 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGAC
* * * * *
29814290 ATGAGAGGTCCTC-CGTAAGACCATGTCTAGGACATGACATGGGCATCGAT
1 ATGAGAGGTCC-CATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGAC
** * *
29814340 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-GTAC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACG-AC
* **
29814389 ATGAAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGC
29814427 TTTCGCATGT
Statistics
Matches: 114, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 35 0.31
50 77 0.68
51 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (49 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGAC
Found at i:29814661 original size:20 final size:20
Alignment explanation
Indices: 29814636--29814686 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
29814626 TGAGTTTTTT
*
29814636 AAGTAAGCAAATAGGTAAAC
1 AAGTAAGCAAATAAGTAAAC
* *
29814656 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AATAAGTAAAC
29814676 AAGTAAGCAAA
1 AAGTAAGCAAA
29814687 GACCATGATA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.14
Consensus pattern (20 bp):
AAGTAAGCAAATAAGTAAAC
Found at i:29816052 original size:76 final size:76
Alignment explanation
Indices: 29815837--29817091 Score: 1284
Period size: 76 Copynumber: 16.4 Consensus size: 76
29815827 TGGGCACATG
* * * * *
29815837 CCGATGTATTTTTCAATTTCTATTTTTTCAAAAGTCAACTTATAATCCGAGAGGTGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCT-GTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
**
29815902 TCGGGTCGCATG
65 TCGGGTCGCACA
29815914 CCGAGGTA-TTTTCAATTTCTGTTTTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGA
1 CCGAGGTATTTTTCAATTTCTG----TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGA
*
29815978 GCCTCGGGTCGTACA
62 GCCTCGGGTCGCACA
* * * *
29815993 CTGAGGTATTTTTCAGTTTCTGGTTTTCAAAAATCAACTCATAATGTGAGAGGTGAGTTGAGCCT
1 CCGAGGTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
* * *
29816058 CAGG-CACACG
66 CGGGTCGCACA
* * * ** *
29816068 CCGATGTATTTTTCAATTTCTATTTTTTTCAAAAATCAACTCATAGTTTGAGAGGTGAGTTGAGT
1 CCGAGGTATTTTTCAATTTC--TGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGC
* **
29816133 CTCGGGTCACATG
64 CTCGGGTCGCACA
* * *
29816146 CCGAGGCATTTTTCAATTTCTATTTTTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAG
1 CCGAGGTATTTTTCAATTTC---TGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAG
* * *
29816211 CCCCAGGTCGCACG
63 CCTCGGGTCGCACA
* * *
29816225 CTGAGGTGTTTTTCAATTTCTGATTTTTCAAAAATCAACTCATAATGCAAGAGGTGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCTG-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
* * ***
29816290 TCAGG-CACGTG
65 TCGGGTCGCACA
* * ** * *
29816301 CCGAGGTATTTTTTAATTTATGTTTTTTTTAAAATCAACTCATAATGCCAGATGTGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCTG-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
* * **
29816366 TTGGG-CACATG
65 TCGGGTCGCACA
* * * *
29816377 CCGAGGTACTTTTCAATTTCTGTTTTTTCAAAAATTAACTCATAATACGAGAGGCGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCTG-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
* **
29816442 TCGGG-CACATG
65 TCGGGTCGCACA
* *
29816453 CCGAGGTACTTTTCAATTTTTGTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCTG-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
* *
29816518 TCGGG-CACATGA
65 TCGGGTCGCA-CA
* * *
29816530 -CGAGGTATTTTTTTAATTTCTATTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGCC
1 CCGAGGTA-TTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
* **
29816594 TCGGG-CACATG
65 TCGGGTCGCACA
*
29816605 CCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCAAGAGGTGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCTG-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
** * *
29816670 TTAGGTCACACG
65 TCGGGTCGCACA
* *
29816682 CCCAGGTATTTTTCAAATTC--TTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGC
1 CCGAGGTATTTTTCAATTTCTGTTTTTC--AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGC
* * *
29816745 CACGAGTCGCACG
64 CTCGGGTCGCACA
* *
29816758 CTGAGGTA-TTTTCAATTTCTGTTTTTCAAATATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
1 CCGAGGTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
* **
29816822 CGGG-CACATG
66 CGGGTCGCACA
* *
29816832 TCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCAAGAGGTGAGTTGAGCC
1 CCGAGGTATTTTTCAATTTCTG-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCC
** * *
29816897 TTAGGTCACACG
65 TCGGGTCGCACA
* *
29816909 CCCAGGTATTTTTCAAATT-TG-TTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGC
1 CCGAGGTATTTTTCAATTTCTGTTTTTC--AAAAATCAACTCATAATGCGAGAGGTGAGTTGAGC
* *
29816972 CACGGGTCGCACG
64 CTCGGGTCGCACA
* * * * *
29816985 CTGAGGTA-TTTTCAATTTCTGTTTTTCAAATATCAACTCATAATCCGATAGGTGAGTTGAGCTT
1 CCGAGGTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
*
29817049 CGGGTCGTC-GA
66 CGGGTCG-CACA
* * * *
29817060 CCGAGCTA-TTTTCGATTTATGCTTTTCAAAAA
1 CCGAGGTATTTTTCAATTTCTGTTTTTCAAAAA
29817092 AAAGATAAAA
Statistics
Matches: 1013, Mismatches: 138, Indels: 56
0.84 0.11 0.05
Matches are distributed among these distances:
74 21 0.02
75 167 0.16
76 511 0.50
77 159 0.16
78 23 0.02
79 120 0.12
80 12 0.01
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (76 bp):
CCGAGGTATTTTTCAATTTCTGTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCT
CGGGTCGCACA
Found at i:29816430 original size:152 final size:152
Alignment explanation
Indices: 29815829--29817046 Score: 1432
Period size: 152 Copynumber: 8.0 Consensus size: 152
29815819 GTTACACTTG
* * * * * *
29815829 GGCACATGCCGATGTATTTTTCAATTTCTATTTTTTCAAAAGTCAACTTATAATCCGAGAGGTGA
1 GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTGA
* *
29815894 GTTGAGCCTCGGGTCGCATGCCGAGGTA-TTTTCAATTTCTGTTTTTTTTTCAAAAATCAACTCA
66 GTTGAGCCTCGGG-CACACGCCGAGGTATTTTTCAATTTCTG---TTTTTTCAAAAATCAACTCA
*
29815958 TAATGCGAGAGGTGAGTTGAGCCTCG
127 TAATGCGAGAGGTGAGTTGAGCCTCA
* * * * *
29815984 GGTCGTACA--CTGAGGTATTTTTCAGTTTCTG-GTTTTCAAAAATCAACTCATAATGTGAGAGG
1 GG-C--ACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGG
* * *
29816046 TGAGTTGAGCCTCAGGCACACGCCGATGTATTTTTCAATTTCTATTTTTTTCAAAAATCAACTCA
63 TGAGTTGAGCCTCGGGCACACGCCGAGGTATTTTTCAATTTCT-GTTTTTTCAAAAATCAACTCA
* ** * *
29816111 TAGTTTGAGAGGTGAGTTGAGTCTCG
127 TAATGCGAGAGGTGAGTTGAGCCTCA
* * *
29816137 GGTCACATGCCGAGGCATTTTTCAATTTCTATTTTTTTTCAAAAATCAACTCATAATACGAGAGG
1 GG-CACATGCCGAGGTATTTTTCAATTTCT-GTTTTTTT-AAAAATCAACTCATAATGCGAGAGG
* * * * * *
29816202 TGAGTTGAGCCCCAGGTCGCACGCTGAGGTGTTTTTCAATTTCTGATTTTTCAAAAATCAACTCA
63 TGAGTTGAGCCTC-GGGCACACGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCA
*
29816267 TAATGCAAGAGGTGAGTTGAGCCTCA
127 TAATGCGAGAGGTGAGTTGAGCCTCA
* * * * * *
29816293 GGCACGTGCCGAGGTATTTTTTAATTTATGTTTTTTTTAAAATCAACTCATAATGCCAGATGTGA
1 GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTGA
* * * *
29816358 GTTGAGCCTTGGGCACATGCCGAGGTACTTTTCAATTTCTGTTTTTTCAAAAATTAACTCATAAT
66 GTTGAGCCTCGGGCACACGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAAT
* * *
29816423 ACGAGAGGCGAGTTGAGCCTCG
131 GCGAGAGGTGAGTTGAGCCTCA
* * *
29816445 GGCACATGCCGAGGTACTTTTCAATTTTTGTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGA
1 GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTGA
* * * *
29816510 GTTGAGCCTCGGGCACATGACGAGGTATTTTTTTAATTTCT-ATTTTTCAAAAATCAACTCATAA
66 GTTGAGCCTCGGGCACACGCCGAGGTA-TTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAA
* *
29816574 TACGAGAGGTGAGTTGAGCCTCG
130 TGCGAGAGGTGAGTTGAGCCTCA
* *
29816597 GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCAAGAGGTGA
1 GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTGA
* * * * ***
29816662 GTTGAGCCTTAGGTCACACGCCCAGGTATTTTTCAAATTCT-TTTTCAAAAAAATCAACTCATAA
66 GTTGAGCC-TCGGGCACACGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAA
*
29816726 TGCGAGAGGTGAGTTGAGCCACGA
130 TGCGAGAGGTGAGTTGAGCCTC-A
* * * * * *
29816750 GTCGCACGCTGAGGTA-TTTTCAATTTCTG-TTTTTCAAATATCAACTCATAATGCGAGAGGTGA
1 GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTGA
* *
29816813 GTTGAGCCTCGGGCACATGTCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAAT
66 GTTGAGCCTCGGGCACACGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAAT
* *
29816878 GCAAGAGGTGAGTTGAGCCTTA
131 GCGAGAGGTGAGTTGAGCCTCA
* * * ***
29816900 GGTCACACGCCCAGGTATTTTTCAAATT-TGTTTTCAAAAAAATCAACTCATAATGCGAGAGGTG
1 GG-CACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTG
* * * *
29816964 AGTTGAGCCACGGGTCGCACGCTGAGGTA-TTTTCAATTTCTG-TTTTTCAAATATCAACTCATA
65 AGTTGAGCCTCGGG-CACACGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATA
* *
29817027 ATCCGATAGGTGAGTTGAGC
129 ATGCGAGAGGTGAGTTGAGC
29817047 TTCGGGTCGT
Statistics
Matches: 912, Mismatches: 132, Indels: 42
0.84 0.12 0.04
Matches are distributed among these distances:
150 28 0.03
151 132 0.14
152 387 0.42
153 143 0.16
154 18 0.02
155 82 0.09
156 95 0.10
157 24 0.03
158 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.34
Consensus pattern (152 bp):
GGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTTAAAAATCAACTCATAATGCGAGAGGTGA
GTTGAGCCTCGGGCACACGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAAT
GCGAGAGGTGAGTTGAGCCTCA
Found at i:29816857 original size:227 final size:226
Alignment explanation
Indices: 29815836--29817052 Score: 1502
Period size: 227 Copynumber: 5.3 Consensus size: 226
29815826 TTGGGCACAT
* * *
29815836 GCCGATGTATTTTTCAATTTCTATTTTTTCAAAAGTCAACTTATAATCCGAGAGGTGAGTTGAGC
1 GCCGAGGTATTTTTCAATTTCT-GTTTTTCAAAA-TCAACTCATAATCCGAGAGGTGAGTTGAGC
*
29815901 CTCGGGTCGCATGCCGAGGTA-TTTTCAATTTCTGTTTTTTTTTCAAAAATCAACTCATAATGCG
64 CTCGGG-CACATGCCGAGGTATTTTTCAATTTCTG---TTTTTTCAAAAATCAACTCATAATGCG
** ** * * *
29815965 AGAGGTGAGTTGAGCCTCGGGTCGTACACTGAGGTATTTTTCAGTTTCTGGTTTTCAAAAATCAA
125 AGAGGTGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTTCAATTTCT-GTTTTCAAAAATCAA
* *
29816030 CTCATAATGTGAGAGGTGAGTTGAGCCTC-AGGCACAC
189 CTCATAATGCGAGAGGTGAGTTGAGCCTCGAGGCGCAC
* * * **
29816067 GCCGATGTATTTTTCAATTTCTATTTTTTTCAAAAATCAACTCATAGTTTGAGAGGTGAGTTGAG
1 GCCGAGGTATTTTTCAATTTC--TGTTTTTC-AAAATCAACTCATAATCCGAGAGGTGAGTTGAG
* * * *
29816132 TCTCGGGTCACATGCCGAGGCATTTTTCAATTTCTATTTTTTTTCAAAAATCAACTCATAATACG
63 CCTCGGG-CACATGCCGAGGTATTTTTCAATTTC--TGTTTTTTCAAAAATCAACTCATAATGCG
** * * *
29816197 AGAGGTGAGTTGAGCCCCAGGTCGCACGCTGAGGTGTTTTTCAATTTCTGATTTTTCAAAAATCA
125 AGAGGTGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTTCAATTTCTG--TTTTCAAAAATCA
* * **
29816262 ACTCATAATGCAAGAGGTGAGTTGAGCCTC-AGGCACGT
188 ACTCATAATGCGAGAGGTGAGTTGAGCCTCGAGGCGCAC
* * * *
29816300 GCCGAGGTATTTTTTAATTTATGTTTTTTTTAAAATCAACTCATAATGCC-AGATGTGAGTTGAG
1 GCCGAGGTATTTTTCAATTTCTG--TTTTTCAAAATCAACTCATAAT-CCGAGAGGTGAGTTGAG
* * * *
29816364 CCTTGGGCACATGCCGAGGTACTTTTCAATTTCTGTTTTTTCAAAAATTAACTCATAATACGAGA
63 CCTCGGGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCGAGA
* * * * * *
29816429 GGCGAGTTGAGCC-TCGGGCACATGCCGAGGTACTTTTCAATTTTTGTTTTTTCAAAAATCAACT
128 GGTGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTTCAATTTCTG--TTTTCAAAAATCAACT
* *
29816493 CATAATGCGAGAGGTGAGTTGAGCCTCG-GGCACAT
191 CATAATGCGAGAGGTGAGTTGAGCCTCGAGGCGCAC
* * * *
29816528 GACGAGGTATTTTTTTAATTTCTATTTTTCAAAAATCAACTCATAATACGAGAGGTGAGTTGAGC
1 GCCGAGGTA-TTTTTCAATTTCTGTTTTTC-AAAATCAACTCATAATCCGAGAGGTGAGTTGAGC
*
29816593 CTCGGGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCAAGAG
64 CTCGGGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCGAGAG
* *
29816658 GTGAGTTGAGCCTTAGGTCACACGCCCAGGTATTTTTCAAATTCT-TTTTCAAAAAAATCAACTC
129 GTGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTTCAATTTCTGTTTTC--AAAAATCAACTC
* *
29816722 ATAATGCGAGAGGTGAGTTGAGCCACGAGTCGCAC
192 ATAATGCGAGAGGTGAGTTGAGCCTCGAGGCGCAC
* *
29816757 GCTGAGGTA-TTTTCAATTTCTGTTTTTCAAATATCAACTCATAATGCGAGAGGTGAGTTGAGCC
1 GCCGAGGTATTTTTCAATTTCTGTTTTTCAAA-ATCAACTCATAATCCGAGAGGTGAGTTGAGCC
* *
29816821 TCGGGCACATGTCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCAAGAGG
65 TCGGGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCGAGAGG
* *
29816886 TGAGTTGAGCCTTAGGTCACACGCCCAGGTATTTTTCAAATT-TGTTTTCAAAAAAATCAACTCA
130 TGAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTTCAATTTCTGTTTTC--AAAAATCAACTCA
*
29816950 TAATGCGAGAGGTGAGTTGAGCCACG-GGTCGCAC
193 TAATGCGAGAGGTGAGTTGAGCCTCGAGG-CGCAC
* * *
29816984 GCTGAGGTA-TTTTCAATTTCTGTTTTTCAAATATCAACTCATAATCCGATAGGTGAGTTGAGCT
1 GCCGAGGTATTTTTCAATTTCTGTTTTTCAAA-ATCAACTCATAATCCGAGAGGTGAGTTGAGCC
29817048 TCGGG
65 TCGGG
29817053 TCGTCGACCG
Statistics
Matches: 884, Mismatches: 80, Indels: 48
0.87 0.08 0.05
Matches are distributed among these distances:
226 10 0.01
227 277 0.31
228 220 0.25
229 90 0.10
231 47 0.05
232 153 0.17
233 86 0.10
235 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (226 bp):
GCCGAGGTATTTTTCAATTTCTGTTTTTCAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCT
CGGGCACATGCCGAGGTATTTTTCAATTTCTGTTTTTTCAAAAATCAACTCATAATGCGAGAGGT
GAGTTGAGCCTTAGGTCACACGCCGAGGTATTTTTCAATTTCTGTTTTCAAAAATCAACTCATAA
TGCGAGAGGTGAGTTGAGCCTCGAGGCGCAC
Found at i:29824121 original size:16 final size:16
Alignment explanation
Indices: 29824099--29824152 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
29824089 GTAGTGGACG
29824099 CAAAAAAATAAAAAAA
1 CAAAAAAATAAAAAAA
* *
29824115 TAAAAAAACAAAAAAA
1 CAAAAAAATAAAAAAA
*
29824131 CAAGAAAAT-AAAAAA
1 CAAAAAAATAAAAAAA
29824146 CAAAAAA
1 CAAAAAA
29824153 CCTCTACCGG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
15 12 0.38
16 20 0.62
ACGTcount: A:0.85, C:0.07, G:0.02, T:0.06
Consensus pattern (16 bp):
CAAAAAAATAAAAAAA
Found at i:29824127 original size:23 final size:23
Alignment explanation
Indices: 29824099--29824152 Score: 81
Period size: 24 Copynumber: 2.3 Consensus size: 23
29824089 GTAGTGGACG
* *
29824099 CAAAAAAATAAAAAAATAAAAAAA
1 CAAAAAAACAAGAAAAT-AAAAAA
29824123 CAAAAAAACAAGAAAATAAAAAA
1 CAAAAAAACAAGAAAATAAAAAA
29824146 CAAAAAA
1 CAAAAAA
29824153 CCTCTACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
23 13 0.46
24 15 0.54
ACGTcount: A:0.85, C:0.07, G:0.02, T:0.06
Consensus pattern (23 bp):
CAAAAAAACAAGAAAATAAAAAA
Found at i:29824151 original size:8 final size:8
Alignment explanation
Indices: 29824099--29824152 Score: 65
Period size: 8 Copynumber: 6.9 Consensus size: 8
29824089 GTAGTGGACG
29824099 CAAAAAAA
1 CAAAAAAA
*
29824107 TAAAAAAA
1 CAAAAAAA
*
29824115 TAAAAAAA
1 CAAAAAAA
29824123 CAAAAAAA
1 CAAAAAAA
*
29824131 CAAGAAAA
1 CAAAAAAA
*
29824139 -TAAAAAA
1 CAAAAAAA
29824146 CAAAAAA
1 CAAAAAA
29824153 CCTCTACCGG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
7 5 0.13
8 34 0.87
ACGTcount: A:0.85, C:0.07, G:0.02, T:0.06
Consensus pattern (8 bp):
CAAAAAAA
Found at i:29825007 original size:93 final size:96
Alignment explanation
Indices: 29824843--29825021 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 96
29824833 TGAATCTTGG
*
29824843 CAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGCTTTGCTATCAACAAAATTTCATCTTAT
1 CAAAATTTGCTATCTTAATTAATTTATT-ATTTCGAGCTTTGCTATCAACAAAATTTCATCTTAT
29824908 CCATTGTGATAATCTTTTTCATCTTATCTTAA
65 CCATTGTGATAATCTTTTTCATCTTATCTTAA
* * * * * *
29824940 CAAAATTTGCTATCTTAATTAATTTA-T-TTT-GAGCTTTGTTCTTAATAAAATTTCATTTTGTC
1 CAAAATTTGCTATCTTAATTAATTTATTATTTCGAGCTTTGCTATCAACAAAATTTCATCTTATC
29825002 CATTGTGATAATCTTTTTCA
66 CATTGTGATAATCTTTTTCA
29825022 AGCATTTTTC
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
93 46 0.61
94 3 0.04
96 1 0.01
97 25 0.33
ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49
Consensus pattern (96 bp):
CAAAATTTGCTATCTTAATTAATTTATTATTTCGAGCTTTGCTATCAACAAAATTTCATCTTATC
CATTGTGATAATCTTTTTCATCTTATCTTAA
Found at i:29825527 original size:24 final size:24
Alignment explanation
Indices: 29825495--29825552 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
29825485 ATGTCCCAAA
*
29825495 ATTATAGTGGACTGAACCTTAAAG
1 ATTACAGTGGACTGAACCTTAAAG
* *
29825519 ATTACAGTGGATTGAACTTTAAAG
1 ATTACAGTGGACTGAACCTTAAAG
29825543 ATTACAGTGG
1 ATTACAGTGG
29825553 GGGCAATCCG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.31
Consensus pattern (24 bp):
ATTACAGTGGACTGAACCTTAAAG
Found at i:29825879 original size:85 final size:84
Alignment explanation
Indices: 29825790--29826716 Score: 518
Period size: 85 Copynumber: 10.8 Consensus size: 84
29825780 AAACCAATCC
*
29825790 TATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
*
29825855 GAGCAGATCACATCCAGTCT
65 GAGCAGATCAAATCCAGTCT
* * * * * * *
29825875 TATCTCCCTAAAGTTACAGCGGAACAGACAGAAGA-AACTA-ATCCTATCTAC-CTGAAGTTGCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATA-AA-ACCAC-AGATCTTATCT-CTCTGAAGTTGCA
* * *
29825937 GT-GAAGC-GAATTAAAACCACAAATCT
62 GTAG-AGCAG-A-TCAAATC-C-AGTCT
* ** *** * *
29825963 TATCTCTCTGAAGTTGCAGTAAAGCAGATCGCATC-CAG-TCTTATCTCTCTGAAGTTGCAGTGG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAG
* ** * * *
29826026 AGCAAAAAAAGAAACCAATCC
66 AGC-AGATCA-AATCCAGTCT
* * *
29826047 TATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* **
29826112 GAGTAGATCGCATCCAGTCT
65 GAGCAGATCAAATCCAGTCT
* * ** * ** * * *
29826132 TATCTCTCTGAAGTTACAGCAGAGCAGACAAAAGAAACCA-ATCTTATCTCCCTAAAATTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAA-CCA-CAGATCTTATCTCTCTGAAGTTGCAGT
* * * *
29826196 GGAGCGGATTAAAACCACAGATCT
64 AGAGCAGA-TCAAATC-CAG-TCT
* * * *** *
29826220 TATCTCTCTGAAGTTGCAGTAGAGCATATCGCATC-CAG-TCTTATCTCTCTGAAGTTGCAGTAG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAG
** * *
29826283 AACAGACAGAAGAAAT-CAATCC
66 ---AG-CAGATCAAATCCAGTCT
* * * * * * *
29826305 TATCTTCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTCATCTCTTTGAAGTTGTAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
* * **
29826370 GAACAAATCGCATCCAGTCT
65 GAGCAGATCAAATCCAGTCT
* * ** * * *
29826390 TATCTCCCTAAAGTTGCAGTGGAGCAGACAAAAGAAACCA-ATCCTATCTCCCTAAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAA-CCA-CAGATCTTATCTCTCTGAAGTTGCAGT
* * *
29826454 GGAGCAGATTAAAACCAAAGATCT
64 AGAGCAGATCAAATCC--AG-TCT
* * * *** * * *
29826478 TATCTCTCTGAAGTTGTAGTAGAGCAGATCGCATC-CAG-TCTTATCTCCCTGAAGTTGCAGCGG
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAACCACAGATCTTATCTCTCTGAAGTTGCA--GT
** * *
29826541 AGCAGACAGAAGAAAT-CAATCC
64 AG-AG-CAGATCAAATCCAGTCT
* *
29826563 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTA
**
29826628 GAGCAGATCGCATCCAGTCT
65 GAGCAGATCAAATCCAGTCT
* * * * *
29826648 TATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGCCACTA-ATCCTATCTCCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAACCAC-AGATCTTATCTCTCTGAAGTTGCAGT
*
29826712 GGAGC
64 AGAGC
29826717 GGATTAAAAC
Statistics
Matches: 625, Mismatches: 169, Indels: 96
0.70 0.19 0.11
Matches are distributed among these distances:
84 52 0.08
85 354 0.57
86 39 0.06
87 38 0.06
88 132 0.21
89 10 0.02
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25
Consensus pattern (84 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAG
AGCAGATCAAATCCAGTCT
Found at i:29826738 original size:44 final size:43
Alignment explanation
Indices: 29825654--29826726 Score: 503
Period size: 44 Copynumber: 25.0 Consensus size: 43
29825644 CAGTAAAGCT
* * * *
29825654 ACAATCATATCTCCCTGAAGTTGCAGGGGAGCGGATTAAAACC
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * ** *
29825697 ACAGATCTTATCTCTCTGAAGTTGCAATAGAGCAGATC-GCATC
1 ACA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * **
29825740 -CAATCTTATCTCCCTGAAGTTGTAATGGAGCAGA-CAAAAGAA
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAA-CC
* *
29825782 ACCAATCCTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACC
1 A-CAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * *
29825826 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC-ACATC
1 ACA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * * * *
29825869 -CAGTCTTATCTCCCTAAAGTTACAGCGGAACAGA-CAGAAGA-A
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCA-AA-ACC
* * *
29825911 ACTAATCCTATCTACCTGAAGTTGCAGTGAAGC-GAATTAAAACC
1 AC-AATCCTATCTCCCTGAAGTTGCAGTGGAGCAG-ATCAAAACC
* * ** ** *
29825955 ACAAATCTTATCTCTCTGAAGTTGCAGTAAAGCAGATC-GCATC
1 AC-AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * ** *
29825998 -CAGTCTTATCTCTCTGAAGTTGCAGTGGAGCAAAAAAAGAAAC
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAA-AACC
* * *
29826041 -CAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACC
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * * ** *
29826083 ACAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC-GCATC
1 ACA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * ** **
29826126 -CAGTCTTATCTCTCTGAAGTTACAGCAGAGCAGA-CAAAAGAA
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAA-CC
* * * * *
29826168 ACCAATCTTATCTCCCTAAAATTGCAGTGGAGCGGATTAAAACC
1 A-CAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * ** *
29826212 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCATATC-GCATC
1 ACA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * * *
29826255 -CAGTCTTATCTCTCTGAAGTTGCAGTAGAACAGA-CAGAAGA-A
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCA-AA-ACC
* * * *
29826297 ATCAATCCTATCTTCCTGAAGTTACAGTGGAGCGGATTAAAACC
1 A-CAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
** * * * * ** *
29826341 ACAAAT-CTCATCTCTTTGAAGTTGTAGTAGAACAAATC-GCATC
1 AC-AATCCT-ATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * **
29826384 -CAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-CAAAAGAA
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAA-CC
* *
29826426 ACCAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACC
1 A-CAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * * ** *
29826470 AAAGATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATC-GCATC
1 ACA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * *
29826513 -CAGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGA-CAGAAGA-A
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCA-AA-ACC
* * *
29826555 ATCAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACC
1 A-CAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * ** *
29826599 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC-GCATC
1 ACA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
* * * * *
29826642 -CAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGA-CTGAAGCC
1 ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATC-AAAACC
* *
29826684 ACTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
1 AC-AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAAC
29826727 GATGAATCCT
Statistics
Matches: 764, Mismatches: 211, Indels: 109
0.70 0.19 0.10
Matches are distributed among these distances:
40 7 0.01
41 221 0.29
42 19 0.02
43 73 0.10
44 428 0.56
45 16 0.02
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (43 bp):
ACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATCAAAACC
Found at i:29826754 original size:129 final size:129
Alignment explanation
Indices: 29825655--29826726 Score: 1588
Period size: 129 Copynumber: 8.3 Consensus size: 129
29825645 AGTAAAGCTA
* *
29825655 CAATCATATCTCCCTGAAGTTGCAGGGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * *
29825720 GCAATAGAGCAGATCGCATCCAATCTTATCTCCCTGAAGTTGTAATGGAGCAGACAAAAGAAAC
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
* *
29825784 CAATCCTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * * * *
29825849 GCAGTAGAGCAGATCACATCCAGTCTTATCTCCCTAAAGTTACAGCGGAACAGACAGAAGAAAC
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
* * * * *
29825913 TAATCCTATCTACCTGAAGTTGCAGTGAAGCGAATTAAAACCACAAATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * *
29825978 GCAGTAAAGCAGATCGCATCCAGTCTTATCTCTCTGAAGTTGCAGTGGAGCA-AAAAAAGAAAC
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
*
29826041 CAATCCTATCTCCCTGAAGTTGCAGTAGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * * **
29826106 ACAGTAGAGTAGATCGCATCCAGTCTTATCTCTCTGAAGTTACAGCAGAGCAGACAAAAGAAAC
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
* * *
29826170 CAATCTTATCTCCCTAAAATTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * * * *
29826235 GCAGTAGAGCATATCGCATCCAGTCTTATCTCTCTGAAGTTGCAGTAGAACAGACAGAAGAAAT
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
* * * * *
29826299 CAATCCTATCTTCCTGAAGTTACAGTGGAGCGGATTAAAACCACAAATCTCATCTCTTTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * *
29826364 GTAGTAGAACAAATCGCATCCAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACAAAAGAAAC
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
* * *
29826428 CAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCAAAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* * * *
29826493 GTAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACAGAAGAAAT
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
*
29826557 CAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
* ** **
29826622 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGCCAC
66 GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
*
29826686 TAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
1 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAC
29826727 GATGAATCCT
Statistics
Matches: 843, Mismatches: 99, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
128 114 0.14
129 729 0.86
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (129 bp):
CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTT
GCAGTAGAGCAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAGAAAC
Found at i:29828820 original size:39 final size:41
Alignment explanation
Indices: 29828753--29828829 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
29828743 GTATCCTTTT
*
29828753 TATAAATATATATACACGTACTTATTTTTATAATTTATCTA
1 TATAAATATATACACACGTACTTATTTTTATAATTTATCTA
* * *
29828794 TATAAATATATACATACTTA-TT-TTTTTATATTTTAT
1 TATAAATATATACACACGTACTTATTTTTATAATTTAT
29828830 AATTTTCATA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 13 0.41
40 2 0.06
41 17 0.53
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.53
Consensus pattern (41 bp):
TATAAATATATACACACGTACTTATTTTTATAATTTATCTA
Found at i:29832441 original size:28 final size:28
Alignment explanation
Indices: 29832401--29832470 Score: 140
Period size: 28 Copynumber: 2.5 Consensus size: 28
29832391 AATTCAAAAC
29832401 AGGCTATTCTTTTCAGAGTTCGCCACAA
1 AGGCTATTCTTTTCAGAGTTCGCCACAA
29832429 AGGCTATTCTTTTCAGAGTTCGCCACAA
1 AGGCTATTCTTTTCAGAGTTCGCCACAA
29832457 AGGCTATTCTTTTC
1 AGGCTATTCTTTTC
29832471 TATTGAGTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (28 bp):
AGGCTATTCTTTTCAGAGTTCGCCACAA
Found at i:29833733 original size:27 final size:27
Alignment explanation
Indices: 29833675--29833734 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
29833665 TAAACCAACT
* * *
29833675 AAAAAAATTAAGAAAAAAATAAAGATT
1 AAAAAAATAAAGAAAAAAATAAAAATA
* * *
29833702 TAAAAAATAAATAAATAAATAAAAATA
1 AAAAAAATAAAGAAAAAAATAAAAATA
29833729 AAAAAA
1 AAAAAA
29833735 GCAAAACATG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.18
Consensus pattern (27 bp):
AAAAAAATAAAGAAAAAAATAAAAATA
Found at i:29838883 original size:5 final size:5
Alignment explanation
Indices: 29838875--29838904 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
29838865 TATTTTAACC
*
29838875 TATTA TATTG TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA
29838905 GAAGGTAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:29841975 original size:6 final size:7
Alignment explanation
Indices: 29841956--29841980 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
29841946 GTTTTAATTG
29841956 AATTTTT
1 AATTTTT
29841963 AATTTTT
1 AATTTTT
29841970 AATTTTT
1 AATTTTT
29841977 AATT
1 AATT
29841981 GATATTTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
AATTTTT
Found at i:29848262 original size:24 final size:24
Alignment explanation
Indices: 29848207--29848266 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
29848197 GTAGAACGAT
*
29848207 GATGGTGACCTAGTGGACGTCGGAC
1 GATGGTGA-CTAGTGGACCTCGGAC
*
29848232 GGT-GTGACTAGTGGACACT-GGAC
1 GATGGTGACTAGTGGAC-CTCGGAC
29848255 GATGGTGACTAG
1 GATGGTGACTAG
29848267 CAATAGGGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 15 0.50
24 13 0.43
25 2 0.07
ACGTcount: A:0.22, C:0.17, G:0.40, T:0.22
Consensus pattern (24 bp):
GATGGTGACTAGTGGACCTCGGAC
Found at i:29849810 original size:14 final size:14
Alignment explanation
Indices: 29849791--29849828 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
29849781 AATTTTGTAT
29849791 TTTATATATAAAAA
1 TTTATATATAAAAA
* *
29849805 TTTATAAATAATAA
1 TTTATATATAAAAA
29849819 TTTA-ATATAA
1 TTTATATATAA
29849829 TTTAATATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 5 0.24
14 16 0.76
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TTTATATATAAAAA
Found at i:29852825 original size:16 final size:16
Alignment explanation
Indices: 29852794--29852824 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
29852784 ACATTTTAAG
29852794 ATTTTGGGTTTATTTT
1 ATTTTGGGTTTATTTT
29852810 ATTTT-GGTTTATTTT
1 ATTTTGGGTTTATTTT
29852825 TGTTTATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.13, C:0.00, G:0.16, T:0.71
Consensus pattern (16 bp):
ATTTTGGGTTTATTTT
Found at i:29853254 original size:44 final size:43
Alignment explanation
Indices: 29853191--29853502 Score: 143
Period size: 44 Copynumber: 6.9 Consensus size: 43
29853181 GATCTACTCT
* * *
29853191 ACTGTAA-CTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCC
1 ACTGTAATC-TCAGGGAGATAAGAT-CTTTGCTTCAATCCGCTCC
* * *
29853235 ACTGTAATCTCAGGGAGATAGGAT-TACTAGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATCT--TTGCTTCAATCCGCTCC
** * *
29853279 GTTATAATCACAGGGAGATAAGAT-TTCTGGCTTCAATCTGATGCGATCTACTC
1 ACTGTAATCTCAGGGAGATAAGATCTT-T-GCTTCAATC-----CG--CT-C-C
* * * *
29853332 TACTATAA-CTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCC
1 -ACTGTAATC-TCAGGGAGATAAGAT-CTTTGCTTCAATCCGCTCC
* * ** * *
29853377 ACTGTAATCTTAGGGAGATAGGAT-TACAAGCTTCAATCTGCTTC
1 ACTGTAATCTCAGGGAGATAAGATCT--TTGCTTCAATCCGCTCC
* **
29853421 GCTGTAATCTCAGGGAGATAAGAT-TTCTGGCTTCAATCTACTCC
1 ACTGTAATCTCAGGGAGATAAGATCTT-T-GCTTCAATCCGCTCC
*
29853465 GCTGTAATCTCAGGGAGATAAGAT-TTCTAGCTTCAATC
1 ACTGTAATCTCAGGGAGATAAGATCTT-T-GCTTCAATC
29853503 TGATGTGATC
Statistics
Matches: 208, Mismatches: 37, Indels: 46
0.71 0.13 0.16
Matches are distributed among these distances:
42 3 0.01
44 163 0.78
45 3 0.01
46 1 0.00
47 2 0.01
49 3 0.01
51 2 0.01
52 1 0.00
53 2 0.01
54 25 0.12
55 1 0.00
56 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (43 bp):
ACTGTAATCTCAGGGAGATAAGATCTTTGCTTCAATCCGCTCC
Found at i:29853411 original size:142 final size:142
Alignment explanation
Indices: 29853149--29853459 Score: 543
Period size: 142 Copynumber: 2.2 Consensus size: 142
29853139 GCACCGCTTG
* *
29853149 AGGGAG-TAAGATTCCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAG
1 AGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAG
*
29853213 ATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTC
66 ATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACAAGCTTCAATCTGCTC
*
29853278 CGTTATAATCAC
131 CGCTATAATCAC
29853290 AGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAG
1 AGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAG
* *
29853355 ATCCTTTGTTTTAATCCGCTCCACTGTAATCTTAGGGAGATAGGATTACAAGCTTCAATCTGCTT
66 ATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACAAGCTTCAATCTGCTC
* *
29853420 CGCTGTAATCTC
131 CGCTATAATCAC
29853432 AGGGAGATAAGATTTCTGGCTTCAATCT
1 AGGGAGATAAGATTTCTGGCTTCAATCT
29853460 ACTCCGCTGT
Statistics
Matches: 161, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
141 6 0.04
142 155 0.96
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (142 bp):
AGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAG
ATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACAAGCTTCAATCTGCTC
CGCTATAATCAC
Found at i:29853456 original size:186 final size:186
Alignment explanation
Indices: 29853236--29853634 Score: 611
Period size: 186 Copynumber: 2.1 Consensus size: 186
29853226 ATCCGCTCCA
* * * *
29853236 CTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGTTATAATCACAGGGAGATAAG
1 CTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTACTCCGCTATAATCACAGGGAGATAAG
* * *
29853301 ATTTCTGGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTGTTT
66 ATTTCTAGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGACAAGATCCTTTATTT
* *
29853366 TAATCCGCTCCACTGTAATCTTAGGGAGATAGGATTACAAGCTTCAATCTGCT-TCG
131 TAATCCGCTCCACTATAATCTCAGGGAGATAGGATTACAAGCTTCAATCTGCTCT-G
* * *
29853422 CTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAG
1 CTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTACTCCGCTATAATCACAGGGAGATAAG
* * *
29853487 ATTTCTAGCTTCAATCTGATGTGATCTACTCTATTGTAACTTCAGAGAGACAAGATCCTTTATTT
66 ATTTCTAGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGACAAGATCCTTTATTT
* *
29853552 TAATTCGCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTG
131 TAATCCGCTCCACTATAATCTCAGGGAGATAGGATTACAAGCTTCAATCTGCTCTG
* *
29853608 TTGTAATCTCAGGGAGATGAGATTTCT
1 CTGTAATCTCAGGGAGATAAGATTTCT
29853635 TCTTCAGTCT
Statistics
Matches: 193, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
186 192 0.99
187 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (186 bp):
CTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTACTCCGCTATAATCACAGGGAGATAAG
ATTTCTAGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGACAAGATCCTTTATTT
TAATCCGCTCCACTATAATCTCAGGGAGATAGGATTACAAGCTTCAATCTGCTCTG
Found at i:29853503 original size:44 final size:44
Alignment explanation
Indices: 29853373--29853503 Score: 190
Period size: 44 Copynumber: 3.0 Consensus size: 44
29853363 TTTTAATCCG
* * * * * *
29853373 CTCCACTGTAATCTTAGGGAGATAGGATTACAAGCTTCAATCTG
1 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTA
* *
29853417 CTTCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTA
1 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTA
29853461 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCT
1 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCT
29853504 GATGTGATCT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 77 1.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (44 bp):
CTCCGCTGTAATCTCAGGGAGATAAGATTTCTAGCTTCAATCTA
Found at i:29855622 original size:31 final size:30
Alignment explanation
Indices: 29855564--29855640 Score: 100
Period size: 31 Copynumber: 2.5 Consensus size: 30
29855554 TCATATTTTA
**
29855564 TTTTGACTTTGATTGATTTCTCTTTTTTGC
1 TTTTGACTTTGATTTTTTTCTCTTTTTTGC
* *
29855594 TTTTGACTTTGATTTTTCTTTTCTTTTTTGT
1 TTTTGACTTTGATTTTT-TTCTCTTTTTTGC
*
29855625 TTTTGATTTTGATTTT
1 TTTTGACTTTGATTTT
29855641 GATTTTTGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 15 0.37
31 26 0.63
ACGTcount: A:0.09, C:0.09, G:0.12, T:0.70
Consensus pattern (30 bp):
TTTTGACTTTGATTTTTTTCTCTTTTTTGC
Found at i:29855634 original size:7 final size:7
Alignment explanation
Indices: 29855618--29855654 Score: 53
Period size: 6 Copynumber: 5.7 Consensus size: 7
29855608 TTTCTTTTCT
29855618 TTTTTG-
1 TTTTTGA
29855624 TTTTTGA
1 TTTTTGA
29855631 -TTTTGA
1 TTTTTGA
29855637 -TTTTGA
1 TTTTTGA
29855643 TTTTTGA
1 TTTTTGA
29855650 TTTTT
1 TTTTT
29855655 TTATCAGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 18 0.62
7 11 0.38
ACGTcount: A:0.11, C:0.00, G:0.14, T:0.76
Consensus pattern (7 bp):
TTTTTGA
Found at i:29863044 original size:50 final size:49
Alignment explanation
Indices: 29862990--29863616 Score: 190
Period size: 50 Copynumber: 12.5 Consensus size: 49
29862980 TCGTTATGGT
*
29862990 TTCAATCTTTCTAATTGCACTGTCGGAGAAACCAGATCCGCCGTTGTGAC
1 TTCAATCTTTCTAATTGCACTGCCGG-GAAACCAGATCCGCCGTTGTGAC
* * * * *** * * * *
29863040 TTCAATC-TGCTACACTGTACCGCCAGGGAAGTAAGGTTCGCCATTGTGGC
1 TTCAATCTTTCTA-ATTGCACTGCC-GGGAAACCAGATCCGCCGTTGTGAC
* ** * * *
29863090 TTCAATCTTTTTAATTGCGTTGTCGAAGAAACCAAATCCGCCGTTGTGAC
1 TTCAATCTTTCTAATTGCACTGCCG-GGAAACCAGATCCGCCGTTGTGAC
* * * * * * *** * * *
29863140 TTGAATC-TGCTCCACTACACCGCCAGGGAAGTAAGATTCGCCATTGTGGC
1 TTCAATCTTTCT-AATTGCACTGCC-GGGAAACCAGATCCGCCGTTGTGAC
* * * * * *
29863190 TTCAATCTTTTTAATTACGCTGTCGAAGAAACCAGATCCGCCGTTGTAAC
1 TTCAATCTTTCTAATTGCACTGCCG-GGAAACCAGATCCGCCGTTGTGAC
* * * * ** * ** *
29863240 TTCAATC-TGCTCCATTACACCGCCAGGGAAATAAGATCTGCTATTGTGGC
1 TTCAATCTTTCT-AATTGCACTGCC-GGGAAACCAGATCCGCCGTTGTGAC
* * * *
29863290 GTCAAAAAAT-TTTTTAATTGCGCTGTCGGGGAAACCAGATCCGCCGTTGTGAC
1 TTC----AATCTTTCTAATTGCACTG-CCGGGAAACCAGATCCGCCGTTGTGAC
* * * * * *** * *
29863343 TTCAATC-TGCTCCACTACACAGCCAGGGAAGTAAGATCCGCCGTTGAGGC
1 TTCAATCTTTCT-AATTGCACTGCC-GGGAAACCAGATCCGCCGTTGTGAC
* * * * *
29863393 TTCAATCTTTTTAATTGCGCTGTCGAAGAAACCAGATCCGCCGTTGTGCC
1 TTCAATCTTTCTAATTGCACTGCCG-GGAAACCAGATCCGCCGTTGTGAC
* * * * *** * *
29863443 TTCAATCTGCTCT-ACTACACCGCCAGGGAAGTAAGATCCGCCGTTGAGGC
1 TTCAATCT-TTCTAATTGCACTGCC-GGGAAACCAGATCCGCCGTTGTGAC
* * *
29863493 TTCAATCTTTTTAATTGC-GTAGCCGGGGAAACCAGATCCGCTGTTGTGAC
1 TTCAATCTTTCTAATTGCACT-GCC-GGGAAACCAGATCCGCCGTTGTGAC
* * * * *** * *
29863543 TTCAAT-ATGCTCCACTGCACTGCCAGGGAAGTAAGATCCGCCATTGTGGC
1 TTCAATCTTTCT-AATTGCACTGCC-GGGAAACCAGATCCGCCGTTGTGAC
* * *
29863593 TTCAATATTTTTAATTGCAATGCC
1 TTCAATCTTTCTAATTGCACTGCC
29863617 AAAGAGATAG
Statistics
Matches: 385, Mismatches: 164, Indels: 56
0.64 0.27 0.09
Matches are distributed among these distances:
49 21 0.05
50 314 0.82
51 17 0.04
53 27 0.07
54 6 0.02
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (49 bp):
TTCAATCTTTCTAATTGCACTGCCGGGAAACCAGATCCGCCGTTGTGAC
Found at i:29863548 original size:303 final size:303
Alignment explanation
Indices: 29863001--29863597 Score: 890
Period size: 303 Copynumber: 2.0 Consensus size: 303
29862991 TCAATCTTTC
** *
29863001 TAATTGCACTGTCGGAGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTACACTGTACCGCCAG
1 TAATTGCACTGTCGGAGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTACACTACACAGCCAG
* * * *
29863066 GGAAGTAAGGTTCGCCATTGTGGCTTCAATCTTTTTAATTGCGTTGTCGAAGAAACCAAATCCGC
66 GGAAGTAAGATCCGCCATTGAGGCTTCAATCTTTTTAATTGCGCTGTCGAAGAAACCAAATCCGC
* * *
29863131 CGTTGTGACTTGAATCTGCTCCACTACACCGCCAGGGAAGTAAGATTCGCCATTGTGGCTTCAAT
131 CGTTGTGACTTCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGAGGCTTCAAT
* * *
29863196 CTTTTTAATTACGCTGTCGAAGAAACCAGATCCGCCGTTGTAACTTCAATCTGCTCCATTACACC
196 CTTTTTAATTACGCTGCCGAAGAAACCAGATCCGCCGTTGTAACTTCAATATGCTCCACTACACC
* *
29863261 GCCAGGGAAATAAGATCTGCTATTGTGGCGTCAAAAAATTTTT
261 GCCAGGGAAATAAGATCCGCCATTGTGGCGTCAAAAAATTTTT
* * *
29863304 TAATTGCGCTGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTACACAGCCAG
1 TAATTGCACTGTCGGAGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTACACTACACAGCCAG
* *
29863369 GGAAGTAAGATCCGCCGTTGAGGCTTCAATCTTTTTAATTGCGCTGTCGAAGAAACCAGATCCGC
66 GGAAGTAAGATCCGCCATTGAGGCTTCAATCTTTTTAATTGCGCTGTCGAAGAAACCAAATCCGC
* * *
29863434 CGTTGTGCCTTCAATCTGCTCTACTACACCGCCAGGGAAGTAAGATCCGCCGTTGAGGCTTCAAT
131 CGTTGTGACTTCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGAGGCTTCAAT
* ** * * *
29863499 CTTTTTAATTGCG-TAGCCGGGGAAACCAGATCCGCTGTTGTGACTTCAATATGCTCCACTGCAC
196 CTTTTTAATTACGCT-GCCGAAGAAACCAGATCCGCCGTTGTAACTTCAATATGCTCCACTACAC
* * *
29863563 TGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAA
260 CGCCAGGGAAATAAGATCCGCCATTGTGGCGTCAA
29863598 TATTTTTAAT
Statistics
Matches: 261, Mismatches: 32, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
302 1 0.00
303 260 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (303 bp):
TAATTGCACTGTCGGAGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTACACTACACAGCCAG
GGAAGTAAGATCCGCCATTGAGGCTTCAATCTTTTTAATTGCGCTGTCGAAGAAACCAAATCCGC
CGTTGTGACTTCAATCTGCTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGAGGCTTCAAT
CTTTTTAATTACGCTGCCGAAGAAACCAGATCCGCCGTTGTAACTTCAATATGCTCCACTACACC
GCCAGGGAAATAAGATCCGCCATTGTGGCGTCAAAAAATTTTT
Found at i:29863635 original size:100 final size:100
Alignment explanation
Indices: 29862949--29863610 Score: 869
Period size: 100 Copynumber: 6.6 Consensus size: 100
29862939 CTCAAGTCCA
* * ** * * * * * *
29862949 CTCCACTGCACCGCCATGGAAGTAAGATATGTCGTTATGGTTTCAATCTTTCTAATTGCACTGTC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCTGTC
*
29863014 GGAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
66 GAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
* ** * * *
29863049 CTACACTGTACCGCCAGGGAAGTAAGGTTCGCCATTGTGGCTTCAATCTTTTTAATTGCGTTGTC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCTGTC
* *
29863114 GAAGAAACCAAATCCGCCGTTGTGACTTGAATCTG
66 GAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
* *
29863149 CTCCACTACACCGCCAGGGAAGTAAGATTCGCCATTGTGGCTTCAATCTTTTTAATTACGCTGTC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCTGTC
*
29863214 GAAGAAACCAGATCCGCCGTTGTAACTTCAATCTG
66 GAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
* * * * *
29863249 CTCCATTACACCGCCAGGGAAATAAGATCTGCTATTGTGGCGTCAAAAAAT-TTTTTAATTGCGC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTC----AATCTTTTTAATTGCGC
**
29863313 TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTG
62 TGTCGAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
* * *
29863352 CTCCACTACACAGCCAGGGAAGTAAGATCCGCCGTTGAGGCTTCAATCTTTTTAATTGCGCTGTC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCTGTC
*
29863417 GAAGAAACCAGATCCGCCGTTGTGCCTTCAATCTG
66 GAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
* * * *
29863452 CTCTACTACACCGCCAGGGAAGTAAGATCCGCCGTTGAGGCTTCAATCTTTTTAATTGCG-TAGC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCT-GT
** * *
29863516 CGGGGAAACCAGATCCGCTGTTGTGACTTCAATATG
65 CGAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
* * *
29863552 CTCCACTGCACTGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATATTTTTAATTGC
1 CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGC
29863611 AATGCCAAAG
Statistics
Matches: 496, Mismatches: 60, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
99 4 0.01
100 405 0.82
103 84 0.17
104 3 0.01
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (100 bp):
CTCCACTACACCGCCAGGGAAGTAAGATCCGCCATTGTGGCTTCAATCTTTTTAATTGCGCTGTC
GAAGAAACCAGATCCGCCGTTGTGACTTCAATCTG
Found at i:29865036 original size:14 final size:15
Alignment explanation
Indices: 29864994--29865038 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
29864984 CTAGCCTCTC
*
29864994 CATTTTTTACTTTTT
1 CATTTTTCACTTTTT
29865009 CCATTTTTCA-TTTTT
1 -CATTTTTCACTTTTT
29865024 CA-TTTTCACTTTTT
1 CATTTTTCACTTTTT
29865038 C
1 C
29865039 GTCATTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 6 0.22
14 8 0.30
15 5 0.19
16 8 0.30
ACGTcount: A:0.13, C:0.20, G:0.00, T:0.67
Consensus pattern (15 bp):
CATTTTTCACTTTTT
Found at i:29868584 original size:21 final size:23
Alignment explanation
Indices: 29868537--29868584 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 23
29868527 TCAAACTCAC
*
29868537 TTTTTCTTCCTCTATTTGCTCTA
1 TTTTTCTTCCTCTAGTTGCTCTA
*
29868560 -TTTTCTT-CTCTAGTT-CTGTA
1 TTTTTCTTCCTCTAGTTGCTCTA
29868580 TTTTT
1 TTTTT
29868585 TCTTTCAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 4 0.18
21 11 0.50
22 7 0.32
ACGTcount: A:0.08, C:0.21, G:0.06, T:0.65
Consensus pattern (23 bp):
TTTTTCTTCCTCTAGTTGCTCTA
Found at i:29869085 original size:22 final size:22
Alignment explanation
Indices: 29869059--29869105 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
29869049 CCGAGATGTC
29869059 ATCCCTCCTTGGTGTAGCCACT
1 ATCCCTCCTTGGTGTAGCCACT
29869081 ATCCCTCCTTGGTGTAGCCACT
1 ATCCCTCCTTGGTGTAGCCACT
29869103 ATC
1 ATC
29869106 TCCTTCAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.15, C:0.36, G:0.17, T:0.32
Consensus pattern (22 bp):
ATCCCTCCTTGGTGTAGCCACT
Found at i:29869110 original size:20 final size:21
Alignment explanation
Indices: 29869062--29869110 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 21
29869052 AGATGTCATC
29869062 CCTCCTTGGTGTAGCCACTAT
1 CCTCCTTGGTGTAGCCACTAT
29869083 CCCTCCTTGGTGTAGCCACTAT
1 -CCTCCTTGGTGTAGCCACTAT
29869105 -CTCCTT
1 CCTCCTT
29869111 CAATGGTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 6 0.22
22 21 0.78
ACGTcount: A:0.12, C:0.37, G:0.16, T:0.35
Consensus pattern (21 bp):
CCTCCTTGGTGTAGCCACTAT
Found at i:29871478 original size:22 final size:21
Alignment explanation
Indices: 29871453--29871507 Score: 74
Period size: 22 Copynumber: 2.6 Consensus size: 21
29871443 GTAAGTTATG
*
29871453 AAAATATGTATACATATATACT
1 AAAATATGTATACATATA-AAT
*
29871475 AAAATATGTATATATATAAAT
1 AAAATATGTATACATATAAAT
*
29871496 ATAATATGTATA
1 AAAATATGTATA
29871508 TATAAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.53, C:0.04, G:0.05, T:0.38
Consensus pattern (21 bp):
AAAATATGTATACATATAAAT
Found at i:29871830 original size:3 final size:3
Alignment explanation
Indices: 29871822--29871882 Score: 54
Period size: 3 Copynumber: 21.0 Consensus size: 3
29871812 ATACATAGTT
* * * * *
29871822 ATA ATA ATA ACA ATT ATA ATA AT- ATA A-A ATA CTA ATA CTA ATA CTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
29871868 ATA CTA ATA ATA ATA
1 ATA ATA ATA ATA ATA
29871883 GTATAAAAAT
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
2 4 0.09
3 40 0.91
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:29876258 original size:19 final size:17
Alignment explanation
Indices: 29876229--29876275 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 17
29876219 TATGTATACG
29876229 AAAAATGAAAGAACAGAA
1 AAAAATGAAAGAA-AGAA
29876247 AAAAATGCAAAGAAAGAA
1 AAAAATG-AAAGAAAGAA
29876265 AAAAATAGAAA
1 AAAAAT-GAAA
29876276 AAGAACCACC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 20 0.74
19 7 0.26
ACGTcount: A:0.74, C:0.04, G:0.15, T:0.06
Consensus pattern (17 bp):
AAAAATGAAAGAAAGAA
Found at i:29876880 original size:15 final size:16
Alignment explanation
Indices: 29876860--29876890 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
29876850 TAAATAAACA
29876860 AAAATAAA-CCAAAAT
1 AAAATAAACCCAAAAT
29876875 AAAATAAACCCAAAAT
1 AAAATAAACCCAAAAT
29876891 CTTAAAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.71, C:0.16, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAATAAACCCAAAAT
Found at i:29878704 original size:21 final size:22
Alignment explanation
Indices: 29878680--29878724 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
29878670 ATAAAATATG
*
29878680 TTATAATTTGAAATTTT-CTTT
1 TTATAATTTAAAATTTTACTTT
**
29878701 TTATGTTTTAAAATTTTACTTT
1 TTATAATTTAAAATTTTACTTT
29878723 TT
1 TT
29878725 TTTGATTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.64
Consensus pattern (22 bp):
TTATAATTTAAAATTTTACTTT
Found at i:29888216 original size:8 final size:8
Alignment explanation
Indices: 29888205--29888229 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
29888195 CCACCTACCC
29888205 CCCACTTG
1 CCCACTTG
29888213 CCCACTTG
1 CCCACTTG
29888221 CCCACTTG
1 CCCACTTG
29888229 C
1 C
29888230 GCCGAACACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.52, G:0.12, T:0.24
Consensus pattern (8 bp):
CCCACTTG
Found at i:29899066 original size:9 final size:9
Alignment explanation
Indices: 29899054--29899088 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
29899044 TGCTTCCTAA
*
29899054 AAAAAAGAAA
1 AAAAAA-AAG
29899064 AAAAAAAAG
1 AAAAAAAAG
29899073 AAAAAAAAG
1 AAAAAAAAG
29899082 AAAAAAA
1 AAAAAAA
29899089 CTTTGGGGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 18 0.75
10 6 0.25
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:29899088 original size:12 final size:12
Alignment explanation
Indices: 29899052--29899080 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
29899042 TTTGCTTCCT
29899052 AAAAAAAAGAAA
1 AAAAAAAAGAAA
29899064 AAAAAAAAGAAA
1 AAAAAAAAGAAA
29899076 AAAAA
1 AAAAA
29899081 GAAAAAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:29901327 original size:15 final size:15
Alignment explanation
Indices: 29901307--29901337 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
29901297 ATGAAGAACG
29901307 TAAAATTGTGGTGGT
1 TAAAATTGTGGTGGT
29901322 TAAAATTGTGGTGGT
1 TAAAATTGTGGTGGT
29901337 T
1 T
29901338 GACTTAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (15 bp):
TAAAATTGTGGTGGT
Found at i:29902187 original size:106 final size:106
Alignment explanation
Indices: 29902060--29902527 Score: 652
Period size: 106 Copynumber: 4.4 Consensus size: 106
29902050 AAATTTAAAT
* * * *
29902060 AAACTTGGGTTGTGATTTTAAATCAGCTAACCTTTATAATATTAGCTGTAAACGTAGGTCATTGA
1 AAACTTAGGTTGTGATCTTAAATCAGCTAACCTTTATAATATCAGCTGTGAACGTAGGTCATTGA
*
29902125 GCTATTTTAGGAGTTGCGATATTAAATCAGCTAACTCAAAG
66 GCTATTTTAGGAGTTGCGATCTTAAATCAGCTAACTCAAAG
* *
29902166 AAGCTTAGGTTGTGATCTTAAATCAGCTAACCTTTATAATATCAGCTGTGAACGTAGGTCAGTGA
1 AAACTTAGGTTGTGATCTTAAATCAGCTAACCTTTATAATATCAGCTGTGAACGTAGGTCATTGA
* * * *
29902231 GATGTTTTAGGAGTTGCGATCTCAAATCAGCTAACTCAAAA
66 GCTATTTTAGGAGTTGCGATCTTAAATCAGCTAACTCAAAG
* * * *
29902272 AAACTTAGGTTG-CAGTCTTAAATTAACTAACCTTTATAATATCAGCTATGAACGTAGGTCATTG
1 AAACTTAGGTTGTGA-TCTTAAATCAGCTAACCTTTATAATATCAGCTGTGAACGTAGGTCATTG
*
29902336 AGCTATTTTAGGAGTT-CTAATCTTAAATCAGCTAACTCAAAG
65 AGCTATTTTAGGAGTTGC-GATCTTAAATCAGCTAACTCAAAG
* **
29902378 AAACTTAGGTTGTGATCGTAAATCAGCTAACCTTTATAATATCAGCTGTGAACGTAGGTCATCAA
1 AAACTTAGGTTGTGATCTTAAATCAGCTAACCTTTATAATATCAGCTGTGAACGTAGGTCATTGA
* * * *
29902443 GCTGTTTTAGGAGTTGTGATCTTAAATAAACTAACTCAAAG
66 GCTATTTTAGGAGTTGCGATCTTAAATCAGCTAACTCAAAG
* * * * *
29902484 AAACTTAGATTGCGATATTAAATTAGCTAACCTTTATCATATCA
1 AAACTTAGGTTGTGATCTTAAATCAGCTAACCTTTATAATATCA
29902528 TCACTTGTAA
Statistics
Matches: 318, Mismatches: 40, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
105 2 0.01
106 315 0.99
107 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (106 bp):
AAACTTAGGTTGTGATCTTAAATCAGCTAACCTTTATAATATCAGCTGTGAACGTAGGTCATTGA
GCTATTTTAGGAGTTGCGATCTTAAATCAGCTAACTCAAAG
Found at i:29912867 original size:5 final size:5
Alignment explanation
Indices: 29912857--29912884 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
29912847 TGCAAAGCCC
29912857 AAAGA AAAGA AAAGA AAAGA AAAGA AAA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAA
29912885 AAAGTGCTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:29913061 original size:17 final size:17
Alignment explanation
Indices: 29913036--29913075 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
29913026 GATAAGTATA
* *
29913036 TATTATCATTGCATTTT
1 TATTTTCATTACATTTT
29913053 TATTTTCATTACATTTT
1 TATTTTCATTACATTTT
*
29913070 CATTTT
1 TATTTT
29913076 AGTGCATTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.23, C:0.12, G:0.03, T:0.62
Consensus pattern (17 bp):
TATTTTCATTACATTTT
Found at i:29914737 original size:36 final size:35
Alignment explanation
Indices: 29914697--29914774 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 35
29914687 CCACTTGTTC
29914697 TTAATAGTGACATGTTGCCATCATTGGAAGGTGGGG
1 TTAAT-GTGACATGTTGCCATCATTGGAAGGTGGGG
29914733 ----T-T-A-ATGTTGCCATCATTGGAAGGTGGGG
1 TTAATGTGACATGTTGCCATCATTGGAAGGTGGGG
29914761 TTAATGTG-CATGTT
1 TTAATGTGACATGTT
29914775 TAAGTCTCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 16
0.69 0.00 0.31
Matches are distributed among these distances:
28 25 0.71
29 1 0.03
30 1 0.03
32 2 0.06
33 1 0.03
34 5 0.14
ACGTcount: A:0.23, C:0.10, G:0.32, T:0.35
Consensus pattern (35 bp):
TTAATGTGACATGTTGCCATCATTGGAAGGTGGGG
Done.