Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 103 of 153
Found at i:32358358 original size:44 final size:44
Alignment explanation
Indices: 32358288--32358497 Score: 264
Period size: 44 Copynumber: 4.8 Consensus size: 44
32358278 ATCTGCTATT
* * *
32358288 TTCAACCTACTCCACAGCTG-CTCAGGGAGATATGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATC
* * *
32358332 TTCAACCCATTCCACTGTTGACCAGGGAGATAGGA-CCTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC-ACAATC
** * * *
32358376 TTCAATTTATTCCACTGCTG-CACAGGGAGATAGAATTCTCAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATC
32358420 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
*
32358464 TTTAACCTATTCCACTGCTGACCAGGGAGATAGG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGG
32358498 GTTGGGGTCA
Statistics
Matches: 141, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
43 2 0.01
44 136 0.96
45 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
Found at i:32358615 original size:88 final size:88
Alignment explanation
Indices: 32358508--32358726 Score: 321
Period size: 88 Copynumber: 2.5 Consensus size: 88
32358498 GTTGGGGTCA
* * * *
32358508 TCGATCTGCGTCGCTGTCGGTGTAGCAAGGCAAGATCTATTATTTTTAACATGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAACATGCTCCGCTGCAAC
32358573 CCAGGGAGGCAAGGCTAGTGCCT
66 CCAGGGAGGCAAGGCTAGTGCCT
* * * *
32358596 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTCCTATTTTTAGCCTGCTCTGCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAACATGCTCCGCTGCAAC
* *
32358661 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTAGTGCCT
* * *
32358684 TCGATCTACTTTGTTGTCGGTGCAGGAAGGCAAGATCTACTAT
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTAT
32358727 CTTCGATCTA
Statistics
Matches: 117, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 117 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (88 bp):
TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAACATGCTCCGCTGCAAC
CCAGGGAGGCAAGGCTAGTGCCT
Found at i:32358777 original size:44 final size:44
Alignment explanation
Indices: 32358706--32358995 Score: 289
Period size: 44 Copynumber: 6.6 Consensus size: 44
32358696 GTTGTCGGTG
* * *
32358706 CAGGAAGGCAAGATCTACTATCTTCGATCTACTTCACGCCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATA
* * * * *
32358750 CATGAAGACAAGATTTGCTTTCTTCGATCTACTTCGCCACCAGTA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATA
* *
32358795 TAGGAAGACAAGATCTG-TATCTTCGATCCACTTC-CTACCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATA
* * * *
32358838 TAGGAAGACAGGACCTGCTATCTTCGATCTACTCCACACCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATA
* * * *
32358882 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATA
** * * *
32358927 TGGGAAGACAAGATCTGC-ATATTCGATCCACTTCGCTACCAATA
1 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATA
* * *
32358971 TAGGAAGATAGGATCTGCTATCTTC
1 CAGGAAGACAAGATCTGCTATCTTC
32358996 ACTGATCTGC
Statistics
Matches: 201, Mismatches: 38, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
42 1 0.00
43 22 0.11
44 130 0.65
45 48 0.24
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (44 bp):
CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATA
Found at i:32358846 original size:88 final size:89
Alignment explanation
Indices: 32358707--32358995 Score: 318
Period size: 88 Copynumber: 3.3 Consensus size: 89
32358697 TTGTCGGTGC
* * * * * * *
32358707 AGGAAGGCAAGATCTACTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATTTGCTTTC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTATC
*
32358772 TTCGATCTACTTCGCCACCAGTAT
66 TTCGATCTACTTCGCCACCAATAT
* * *
32358796 AGGAAGACAAGATCTG-TATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGACCTGCTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATATAGGAAGACAAGATCTGCTAT
*
32358859 CTTCGATCTAC-TC-CACACCAATAC
65 CTTCGATCTACTTCGC-CACCAATAT
* * * * *
32358883 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGC-AT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATATAGGAAGACAAGATCTGCTAT
* * *
32358947 ATTCGATCCACTTCGCTACCAATAT
65 CTTCGATCTACTTCGCCACCAATAT
* *
32358972 AGGAAGATAGGATCTGCTATCTTC
1 AGGAAGACAAGATCTGCTATCTTC
32358996 ACTGATCTGC
Statistics
Matches: 166, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
86 1 0.01
87 25 0.15
88 74 0.45
89 64 0.39
90 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (89 bp):
AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATATAGGAAGACAAGATCTGCTATC
TTCGATCTACTTCGCCACCAATAT
Found at i:32358888 original size:132 final size:133
Alignment explanation
Indices: 32358723--32358995 Score: 467
Period size: 132 Copynumber: 2.1 Consensus size: 133
32358713 GCAAGATCTA
* * *
32358723 CTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATTTGCTTTCTTCGATCTACTTCGCC
1 CTATCTTCGATCTACTCCACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCC
* *
32358788 ACCAGTATAGGAAGACAAGATCTGTATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGAC
66 ACCAGTATAGGAAGACAAGATCTGCATATTCGATCCACTTCGCTACCAATATAGGAAGACAGGAC
32358852 CTG
131 CTG
32358855 CTATCTTCGATCTACTCCACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCC
1 CTATCTTCGATCTACTCCACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCC
* * *
32358920 ACCAGTATGGGAAGACAAGATCTGCATATTCGATCCACTTCGCTACCAATATAGGAAGATAGGAT
66 ACCAGTATAGGAAGACAAGATCTGCATATTCGATCCACTTCGCTACCAATATAGGAAGACAGGAC
32358985 CTG
131 CTG
32358988 CTATCTTC
1 CTATCTTC
32358996 ACTGATCTGC
Statistics
Matches: 132, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
132 100 0.76
133 32 0.24
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (133 bp):
CTATCTTCGATCTACTCCACACCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCC
ACCAGTATAGGAAGACAAGATCTGCATATTCGATCCACTTCGCTACCAATATAGGAAGACAGGAC
CTG
Found at i:32363989 original size:3 final size:3
Alignment explanation
Indices: 32363981--32364019 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
32363971 GTATATATAG
* *
32363981 TAA TAA TAA TAA TGA TAA TAA TAA CAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32364020 CTTAATAACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:32364766 original size:16 final size:16
Alignment explanation
Indices: 32364741--32364790 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
32364731 TTATTTATAT
*
32364741 TTATTTATATAATAAA
1 TTATTAATATAATAAA
32364757 TTATTAATATAAT---
1 TTATTAATATAATAAA
* *
32364770 TTATTATTTTAATAAA
1 TTATTAATATAATAAA
32364786 TTATT
1 TTATT
32364791 TGATATTTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 11 0.39
16 17 0.61
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTATTAATATAATAAA
Found at i:32364823 original size:13 final size:14
Alignment explanation
Indices: 32364805--32364846 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
32364795 ATTTCAATTT
32364805 TATTTTAATAATAA
1 TATTTTAATAATAA
*
32364819 T-TTTTAAAAATAA
1 TATTTTAATAATAA
32364832 TAGTTTTAAATAATA
1 TA-TTTT-AATAATA
32364847 TTCTTCATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
13 12 0.52
14 1 0.04
15 4 0.17
16 6 0.26
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (14 bp):
TATTTTAATAATAA
Found at i:32371177 original size:14 final size:14
Alignment explanation
Indices: 32371158--32371184 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32371148 GAAAAGTAAG
32371158 TCATTTTCCAGAAA
1 TCATTTTCCAGAAA
32371172 TCATTTTCCAGAA
1 TCATTTTCCAGAA
32371185 GCCATTTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.07, T:0.37
Consensus pattern (14 bp):
TCATTTTCCAGAAA
Found at i:32371190 original size:14 final size:14
Alignment explanation
Indices: 32371159--32371193 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
32371149 AAAAGTAAGT
*
32371159 CATTTTCCAGAAAT
1 CATTTTCCAGAAAC
*
32371173 CATTTTCCAGAAGC
1 CATTTTCCAGAAAC
32371187 CATTTTC
1 CATTTTC
32371194 AGCGAAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.37
Consensus pattern (14 bp):
CATTTTCCAGAAAC
Found at i:32375488 original size:12 final size:12
Alignment explanation
Indices: 32375473--32375498 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32375463 ATACAGGTCA
32375473 ACGGGTCAAAAT
1 ACGGGTCAAAAT
32375485 ACGGGTCAAAAT
1 ACGGGTCAAAAT
32375497 AC
1 AC
32375499 CCGTGACCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.15
Consensus pattern (12 bp):
ACGGGTCAAAAT
Found at i:32376026 original size:110 final size:107
Alignment explanation
Indices: 32375909--32376225 Score: 323
Period size: 110 Copynumber: 3.0 Consensus size: 107
32375899 TGAATGTAAT
* * * *
32375909 TTTTTTTATAATTATTTTAAAATTGTTTTGTTAGTAATTTATGATTATGTTATAATTTGTTTGTT
1 TTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTA-GTTATAA-TTGTTTG-T
32375974 GTTTTAGTTTAGTGTTTTGTGAATTTTTATTAATGTAAATTTTTG-
63 G-TTTAGTTTAGTGTTTTGTGAATTTTTATTAATGTAAATTTTTGA
* * * * * *
32376019 TTTTTTTAAAATTATTTTATAGTTATTTTGTTAATAATTTTTTATTAGCTTATAAATGGTTGCGT
1 TTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAG-TTATAATTGTTTGTGT
* *
32376084 TTGGTTTAGTGTTTTCTTG-A---TT-TT--TG---ATTTTTGA
65 TTAGTTTAGTGTTTT-GTGAATTTTTATTAATGTAAATTTTTGA
** *
32376118 TTAATTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTG
1 TTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTA-GTTAT-AATTGTTTGTG
* *
32376183 TTTAGTTTAGTGCTTTGTGATTTTTTATTAATGTAAACTTTTT
64 TTTAGTTTAGTGTTTTGTGAATTTTTATTAATGTAAA-TTTTT
32376226 ATAATGTAAT
Statistics
Matches: 166, Mismatches: 25, Indels: 32
0.74 0.11 0.14
Matches are distributed among these distances:
98 7 0.04
99 48 0.29
100 22 0.13
101 2 0.01
103 4 0.02
104 4 0.02
106 2 0.01
107 16 0.10
108 3 0.02
109 7 0.04
110 51 0.31
ACGTcount: A:0.25, C:0.02, G:0.14, T:0.60
Consensus pattern (107 bp):
TTTTTTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGTTATAATTGTTTGTGTT
TAGTTTAGTGTTTTGTGAATTTTTATTAATGTAAATTTTTGA
Found at i:32376140 original size:99 final size:99
Alignment explanation
Indices: 32376023--32376207 Score: 273
Period size: 99 Copynumber: 1.9 Consensus size: 99
32376013 TTTTTGTTTT
* * *
32376023 TTTAAAATTATTTTATAGTTATTTTGTTAATAATTTTTTATTAGCTTATAAATGGTT-GCGTTTG
1 TTTAAAATTATTTTATAGTTATTTTGTTAATAATTTATGATTAGCTTATAAATGGTTAGCGTTTA
* *
32376087 GTTTAGTGTTTTCTTGATTTTTGATTTTTGATTAA
66 GTTTAGTGCTTT-GTGATTTTTGATTTTTGATTAA
* * * *
32376122 TTTAAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTGTTTA
1 TTTAAAATTATTTTATAGTTATTTTGTTAATAATTTATGATTAGCTTATAAATGGTTAGCGTTTA
32376187 GTTTAGTGCTTTGTGATTTTT
66 GTTTAGTGCTTTGTGATTTTT
32376208 TATTAATGTA
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
99 60 0.79
100 16 0.21
ACGTcount: A:0.25, C:0.02, G:0.15, T:0.58
Consensus pattern (99 bp):
TTTAAAATTATTTTATAGTTATTTTGTTAATAATTTATGATTAGCTTATAAATGGTTAGCGTTTA
GTTTAGTGCTTTGTGATTTTTGATTTTTGATTAA
Found at i:32378264 original size:33 final size:33
Alignment explanation
Indices: 32378227--32378360 Score: 119
Period size: 33 Copynumber: 4.1 Consensus size: 33
32378217 GATATCTTCA
32378227 GCCCACTA-CCACCGCAGTACTCCACTTCTCCCG
1 GCCCA-TATCCACCGCAGTACTCCACTTCTCCCG
* ** *
32378260 GCCCATATCTACCTTAGTACTCTAC-TCTTCCCG
1 GCCCATATCCACCGCAGTACTCCACTTC-TCCCG
* * *
32378293 GCCCATATCCACTGCAGTACTTCACTCCTCCCG
1 GCCCATATCCACCGCAGTACTCCACTTCTCCCG
* * * * * *
32378326 GTCCGTATCCATCGTAGCACTCCACTTCTCTCG
1 GCCCATATCCACCGCAGTACTCCACTTCTCCCG
32378359 GC
1 GC
32378361 TCAAGTTCAT
Statistics
Matches: 77, Mismatches: 21, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
32 4 0.05
33 72 0.94
34 1 0.01
ACGTcount: A:0.17, C:0.44, G:0.13, T:0.26
Consensus pattern (33 bp):
GCCCATATCCACCGCAGTACTCCACTTCTCCCG
Found at i:32381971 original size:13 final size:13
Alignment explanation
Indices: 32381949--32381992 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 13
32381939 ACACCACTAA
*
32381949 TAAAATAATATAT
1 TAAAAAAATATAT
32381962 TAAAAAAATA-A-
1 TAAAAAAATATAT
32381973 -AAAAAAAT-TAT
1 TAAAAAAATATAT
32381984 TAAAAAAAT
1 TAAAAAAAT
32381993 GGTGGTGCCG
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
10 9 0.33
12 9 0.33
13 9 0.33
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (13 bp):
TAAAAAAATATAT
Found at i:32381984 original size:22 final size:23
Alignment explanation
Indices: 32381950--32381992 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
32381940 CACCACTAAT
*
32381950 AAAATAATATATTAAAAAAATAA
1 AAAAAAATATATTAAAAAAATAA
32381973 AAAAAAAT-TATTAAAAAAAT
1 AAAAAAATATATTAAAAAAAT
32381993 GGTGGTGCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (23 bp):
AAAAAAATATATTAAAAAAATAA
Found at i:32382453 original size:20 final size:20
Alignment explanation
Indices: 32382430--32382467 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
32382420 AAAAAAGAAT
32382430 TCAAAATAATTTTCAAAAAA
1 TCAAAATAATTTTCAAAAAA
*
32382450 TCAAAATAATTTTTAAAA
1 TCAAAATAATTTTCAAAA
32382468 TTTAAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (20 bp):
TCAAAATAATTTTCAAAAAA
Found at i:32392470 original size:43 final size:43
Alignment explanation
Indices: 32392405--32392534 Score: 142
Period size: 43 Copynumber: 3.0 Consensus size: 43
32392395 TAGGATCTCC
*
32392405 GATATGTGTTTTCGTGTAAGACCACGTTTGGGACGTTGGCATT
1 GATATGTGTTTACGTGTAAGACCACGTTTGGGACGTTGGCATT
* *
32392448 GA-ATTGTGTTTACGTGTAAGACC-C-TATCTGGGACAG-TGACATC
1 GATA-TGTGTTTACGTGTAAGACCACGT-T-TGGGAC-GTTGGCATT
* * *
32392491 GATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATT
1 GATATGTGTTTACGTGTAAGACCACGTTTGGGACGTTGGCATT
32392534 G
1 G
32392535 TATCAGCTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
41 1 0.01
42 4 0.06
43 62 0.87
44 3 0.04
45 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.32
Consensus pattern (43 bp):
GATATGTGTTTACGTGTAAGACCACGTTTGGGACGTTGGCATT
Found at i:32397545 original size:3 final size:3
Alignment explanation
Indices: 32397539--32397571 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
32397529 AAAAAAACCC
32397539 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32397572 AAGAAACCCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:32398869 original size:19 final size:20
Alignment explanation
Indices: 32398835--32398873 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
32398825 TAATATTAGT
*
32398835 TTTATTGTATATTATAATAA
1 TTTATTATATATTATAATAA
32398855 TTTATTATA-ATTATAATAA
1 TTTATTATATATTATAATAA
32398874 AGATTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
TTTATTATATATTATAATAA
Found at i:32398884 original size:22 final size:20
Alignment explanation
Indices: 32398836--32398886 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 20
32398826 AATATTAGTT
*
32398836 TTATTGTAT-ATTATAATAAT
1 TTATT-TATAATTATAATAAA
32398856 TTA-TTATAATTATAATAAAGA
1 TTATTTATAATTATAAT-AA-A
32398877 TTATTTATAA
1 TTATTTATAA
32398887 CTTAAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
18 3 0.12
19 9 0.35
20 5 0.19
21 3 0.12
22 6 0.23
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (20 bp):
TTATTTATAATTATAATAAA
Found at i:32401794 original size:16 final size:17
Alignment explanation
Indices: 32401775--32401813 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
32401765 AAATACTAAT
32401775 ATTTTAAAATACTTT-A
1 ATTTTAAAATACTTTAA
* *
32401791 ATTTTAAATTTCTTTAA
1 ATTTTAAAATACTTTAA
32401808 ATTTTA
1 ATTTTA
32401814 GAGTTCTCGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTTTAAAATACTTTAA
Found at i:32402144 original size:13 final size:13
Alignment explanation
Indices: 32402126--32402155 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
32402116 CAAATATTTA
32402126 AAAATAAAAAAAT
1 AAAATAAAAAAAT
32402139 AAAATAAAAAAAT
1 AAAATAAAAAAAT
32402152 AAAA
1 AAAA
32402156 AATAAAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (13 bp):
AAAATAAAAAAAT
Found at i:32402194 original size:20 final size:20
Alignment explanation
Indices: 32402171--32402211 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
32402161 AACTTTTAAT
32402171 AATTATTAAAAA-ATATAAAA
1 AATTATTAAAAATAT-TAAAA
32402191 AATTATTAAAAATATTAAAA
1 AATTATTAAAAATATTAAAA
32402211 A
1 A
32402212 CAATGTCTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 18 0.90
21 2 0.10
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AATTATTAAAAATATTAAAA
Found at i:32403395 original size:11 final size:11
Alignment explanation
Indices: 32403381--32403405 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32403371 ATTTTAAATG
32403381 ATTTTTTTATA
1 ATTTTTTTATA
32403392 ATTTTTTTATA
1 ATTTTTTTATA
32403403 ATT
1 ATT
32403406 CTTAATAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
ATTTTTTTATA
Found at i:32403552 original size:16 final size:16
Alignment explanation
Indices: 32403531--32403562 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32403521 AATTATAGGA
*
32403531 AAATTTTTTATTTTTT
1 AAATTTTTAATTTTTT
32403547 AAATTTTTAATTTTTT
1 AAATTTTTAATTTTTT
32403563 TTAAATATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
AAATTTTTAATTTTTT
Found at i:32406468 original size:51 final size:51
Alignment explanation
Indices: 32406408--32406506 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 51
32406398 TCATATTCGC
* * *
32406408 ATATTCATGCCTTGTAATTATTTACATTTACCCGTCATACCCTATAATCTT
1 ATATTCATGCCCTGTAATCATTTACATTTACCCATCATACCCTATAATCTT
* *
32406459 ATATTCATGCCCTGTAATCATTTACATTTACCTATCATACCCTGTAAT
1 ATATTCATGCCCTGTAATCATTTACATTTACCCATCATACCCTATAAT
32406507 AATTCATATT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.28, C:0.24, G:0.06, T:0.41
Consensus pattern (51 bp):
ATATTCATGCCCTGTAATCATTTACATTTACCCATCATACCCTATAATCTT
Found at i:32406504 original size:30 final size:30
Alignment explanation
Indices: 32406463--32406639 Score: 102
Period size: 30 Copynumber: 5.8 Consensus size: 30
32406453 AATCTTATAT
* * * *
32406463 TCATGCCCTGTAATCATTTACATTTACCTA
1 TCATACCCTATAATCATTCACATTTACATA
* * * *
32406493 TCATACCCTGTAATAATTCATATTTGCATA
1 TCATACCCTATAATCATTCACATTTACATA
* * * * *
32406523 TTTATGCCCTATAATCATTTACATTTACTTT
1 -TCATACCCTATAATCATTCACATTTACATA
* * **
32406554 TCATACCCTATAATTATTCATATTCGCATA
1 TCATACCCTATAATCATTCACATTTACATA
* * * * * * *
32406584 TTCATGCCATGTAATCATTTACATATACCTG
1 -TCATACCCTATAATCATTCACATTTACATA
* *
32406615 TCATACCTTATAATCAGTCACATTT
1 TCATACCCTATAATCATTCACATTT
32406640 GTATTTTCTT
Statistics
Matches: 104, Mismatches: 41, Indels: 4
0.70 0.28 0.03
Matches are distributed among these distances:
30 64 0.62
31 40 0.38
ACGTcount: A:0.30, C:0.23, G:0.06, T:0.42
Consensus pattern (30 bp):
TCATACCCTATAATCATTCACATTTACATA
Found at i:32406530 original size:61 final size:61
Alignment explanation
Indices: 32406459--32406628 Score: 241
Period size: 61 Copynumber: 2.8 Consensus size: 61
32406449 CTATAATCTT
* *
32406459 ATATTCATGCCCTGTAATCATTTACATTTACCTATCATACCCTGTAATAATTCATATTTGC
1 ATATTCATGCCCTGTAATCATTTACATTTACCTATCATACCCTATAATAATTCATATTCGC
* * * * *
32406520 ATATTTATGCCCTATAATCATTTACATTTACTTTTCATACCCTATAATTATTCATATTCGC
1 ATATTCATGCCCTGTAATCATTTACATTTACCTATCATACCCTATAATAATTCATATTCGC
* * * *
32406581 ATATTCATGCCATGTAATCATTTACATATACCTGTCATACCTTATAAT
1 ATATTCATGCCCTGTAATCATTTACATTTACCTATCATACCCTATAAT
32406629 CAGTCACATT
Statistics
Matches: 95, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 95 1.00
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.42
Consensus pattern (61 bp):
ATATTCATGCCCTGTAATCATTTACATTTACCTATCATACCCTATAATAATTCATATTCGC
Found at i:32411767 original size:28 final size:28
Alignment explanation
Indices: 32411726--32411972 Score: 176
Period size: 28 Copynumber: 8.6 Consensus size: 28
32411716 CACACCAAAA
32411726 AAAGGAAAGCCTTTGTGGCAAACCTATGG
1 AAAGGAAAGCCTTTGTGGCAAACCTAT-G
** *
32411755 AAA-GAAAGCCTTTGTGGTGAACCTGTG
1 AAAGGAAAGCCTTTGTGGCAAACCTATG
* * *** *
32411782 AAAGAAAAACCTACATGGAAAACCTATG
1 AAAGGAAAGCCTTTGTGGCAAACCTATG
** ** * *
32411810 AAAGGAAAGATTTTGTGGTGAATCTCTG
1 AAAGGAAAGCCTTTGTGGCAAACCTATG
* * *
32411838 AAAGGAAAGCTTTTGTGGCGAACCTTTG
1 AAAGGAAAGCCTTTGTGGCAAACCTATG
* * *
32411866 TAAAGGAAAAACCTTTGTGGTGAACCTCTAT-
1 -AAAGG-AAAGCCTTTGTGG-CAAAC-CTATG
32411897 AAAGGAAAAGCCTTTGTGGCAAACCTATG
1 AAAGG-AAAGCCTTTGTGGCAAACCTATG
* ** *
32411926 CAAATGAAAGATTTTGTGG-AGAACCTTTG
1 -AAAGGAAAGCCTTTGTGGCA-AACCTATG
32411955 AAAGGAAAGCCTTTGTGG
1 AAAGGAAAGCCTTTGTGG
32411973 TAACCTCTAA
Statistics
Matches: 168, Mismatches: 42, Indels: 17
0.74 0.19 0.07
Matches are distributed among these distances:
27 4 0.02
28 97 0.58
29 29 0.17
30 33 0.20
31 2 0.01
32 3 0.02
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (28 bp):
AAAGGAAAGCCTTTGTGGCAAACCTATG
Found at i:32411862 original size:56 final size:57
Alignment explanation
Indices: 32411726--32411972 Score: 264
Period size: 56 Copynumber: 4.3 Consensus size: 57
32411716 CACACCAAAA
* * *
32411726 AAAGGAAAGCCTTTGTGGCAAACCTATGGAAA-GAAAGCCTTTGTGGTGAACCTGTG
1 AAAGGAAAGCCTTTGTGGCAAACCTATGCAAAGGAAAGACTTTGTGGTGAACCTCTG
* * *** * * *
32411782 AAAGAAAAACCTACATGGAAAACCTATG-AAAGGAAAGATTTTGTGGTGAATCTCTG
1 AAAGGAAAGCCTTTGTGGCAAACCTATGCAAAGGAAAGACTTTGTGGTGAACCTCTG
* * * * * *
32411838 AAAGGAAAGCTTTTGTGGCGAACCTTTGTAAAGGAAAAACCTTTGTGGTGAACCTCTAT
1 AAAGGAAAGCCTTTGTGGCAAACCTATGCAAAGGAAAGA-CTTTGTGGTGAACCTCT-G
* * * *
32411897 AAAGGAAAAGCCTTTGTGGCAAACCTATGCAAATGAAAGATTTTGTGGAGAACCTTTG
1 AAAGG-AAAGCCTTTGTGGCAAACCTATGCAAAGGAAAGACTTTGTGGTGAACCTCTG
32411955 AAAGGAAAGCCTTTGTGG
1 AAAGGAAAGCCTTTGTGG
32411973 TAACCTCTAA
Statistics
Matches: 153, Mismatches: 33, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
55 3 0.02
56 61 0.40
57 22 0.14
58 20 0.13
59 19 0.12
60 28 0.18
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (57 bp):
AAAGGAAAGCCTTTGTGGCAAACCTATGCAAAGGAAAGACTTTGTGGTGAACCTCTG
Found at i:32411957 original size:117 final size:112
Alignment explanation
Indices: 32411726--32411972 Score: 305
Period size: 117 Copynumber: 2.2 Consensus size: 112
32411716 CACACCAAAA
* *
32411726 AAAGGAAAGCCTTTGTGGCAAACCTATGGAAAGAAAGCCTTTGTGGTGAACCTGTGAAAGAAAAA
1 AAAGGAAAGCCTTTGTGGCAAACCTATGGAAAGAAAACCTTTGTGGTGAACCTCTGAAAGAAAAA
* *
32411791 CCTACATGGAAAACCTATGAAAGGAAAGATTTTGTGGTGAATCTCTG
66 CCTACATGGAAAACCTATGAAAGGAAAGATTTTGTGGAGAACCTCTG
* * * * *
32411838 AAAGGAAAGCTTTTGTGGCGAACCTTTGTAAAGGAAAAACCTTTGTGGTGAACCTCTATAAAGGA
1 AAAGGAAAGCCTTTGTGGCAAACCTATGGAAA-G-AAAACCTTTGTGGTGAACCTCT-GAAA-GA
* *** * * *
32411903 AAAGCCTTTGTGGCAAACCTATGCAAATGAAAGATTTTGTGGAGAACCTTTG
62 AAAACCTACATGGAAAACCTATG-AAAGGAAAGATTTTGTGGAGAACCTCTG
32411955 AAAGGAAAGCCTTTGTGG
1 AAAGGAAAGCCTTTGTGG
32411973 TAACCTCTAA
Statistics
Matches: 113, Mismatches: 17, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
112 28 0.25
113 1 0.01
114 20 0.18
115 3 0.03
116 20 0.18
117 41 0.36
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (112 bp):
AAAGGAAAGCCTTTGTGGCAAACCTATGGAAAGAAAACCTTTGTGGTGAACCTCTGAAAGAAAAA
CCTACATGGAAAACCTATGAAAGGAAAGATTTTGTGGAGAACCTCTG
Found at i:32412044 original size:28 final size:28
Alignment explanation
Indices: 32412013--32412098 Score: 83
Period size: 27 Copynumber: 3.1 Consensus size: 28
32412003 TCTTTGGAAT
32412013 GAAAAGCCTTTATGGTAATTCATGAAAG
1 GAAAAGCCTTTATGGTAATTCATGAAAG
* *
32412041 GAAAA-CCTTAATGGTTCAA-TC-T-AAAT
1 GAAAAGCCTTTATGG-T-AATTCATGAAAG
*
32412067 GAAAAGCCTCTT-TGGTGATTCATGAAAG
1 GAAAAGCCT-TTATGGTAATTCATGAAAG
32412095 GAAA
1 GAAA
32412099 TGCCCCCGTG
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
25 1 0.02
26 11 0.24
27 16 0.35
28 16 0.35
29 2 0.04
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.28
Consensus pattern (28 bp):
GAAAAGCCTTTATGGTAATTCATGAAAG
Found at i:32412189 original size:27 final size:27
Alignment explanation
Indices: 32412159--32412245 Score: 72
Period size: 27 Copynumber: 3.2 Consensus size: 27
32412149 GAAATGCCTT
32412159 TGTGGCATAATATGAAAGAAAAGATTC
1 TGTGGCATAATATGAAAGAAAAGATTC
* * *
32412186 TGTGGCGT-ATCATAAAAAGAGAAGACTT-
1 TGTGGCATAAT-AT-GAAAGAAAAGA-TTC
* *
32412214 TGTGGCGA-AGTATGAAAGAAAAGCTTC
1 TGTGGC-ATAATATGAAAGAAAAGATTC
32412241 TGTGG
1 TGTGG
32412246 AAAACTTGGA
Statistics
Matches: 46, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
26 4 0.09
27 22 0.48
28 17 0.37
29 3 0.07
ACGTcount: A:0.38, C:0.09, G:0.28, T:0.25
Consensus pattern (27 bp):
TGTGGCATAATATGAAAGAAAAGATTC
Found at i:32417855 original size:34 final size:34
Alignment explanation
Indices: 32417779--32417857 Score: 97
Period size: 34 Copynumber: 2.3 Consensus size: 34
32417769 ATCACAATGC
* **
32417779 TAGTAATCAGTAGGGCCTTTGCCCAATTTCAGTAA
1 TAGT-ATCAGTAGGGCCTTGGCCCAATAACAGTAA
*
32417814 TAGTATCAGTAGGGCCTTGGCCCAA-AACAGTTA
1 TAGTATCAGTAGGGCCTTGGCCCAATAACAGTAA
32417847 TAGATATCAGT
1 TAG-TATCAGT
32417858 CATGCAGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
33 8 0.21
34 27 0.69
35 4 0.10
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (34 bp):
TAGTATCAGTAGGGCCTTGGCCCAATAACAGTAA
Found at i:32418338 original size:27 final size:27
Alignment explanation
Indices: 32418308--32418456 Score: 221
Period size: 27 Copynumber: 5.6 Consensus size: 27
32418298 TCATCTCCTA
*
32418308 GGGGTATTTTGGTCATTTTACCCTATG
1 GGGGTATTTCGGTCATTTTACCCTATG
*
32418335 GGGGTATTTCGGCCA-TTTACCCTATG
1 GGGGTATTTCGGTCATTTTACCCTATG
* * *
32418361 GAGGTATTTCGGTCATTCTATCCTATG
1 GGGGTATTTCGGTCATTTTACCCTATG
*
32418388 GGGGTATTTCGGTCATTTTATCCTATG
1 GGGGTATTTCGGTCATTTTACCCTATG
*
32418415 GGGGTATTTCGGTCATTTTACCCT-TT
1 GGGGTATTTCGGTCATTTTACCCTATG
32418441 GGGGTATTTCGGTCAT
1 GGGGTATTTCGGTCAT
32418457 ACATGGACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
26 41 0.37
27 70 0.63
ACGTcount: A:0.15, C:0.17, G:0.26, T:0.42
Consensus pattern (27 bp):
GGGGTATTTCGGTCATTTTACCCTATG
Found at i:32418447 original size:80 final size:80
Alignment explanation
Indices: 32418308--32418456 Score: 246
Period size: 80 Copynumber: 1.9 Consensus size: 80
32418298 TCATCTCCTA
*
32418308 GGGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCGGCCATTTACCCTATGGAGGTATTTCGG
1 GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGCCATTTACCCTATGGAGGTATTTCGG
32418373 TCATTCTATCCTATG
66 TCATTCTATCCTATG
* * *
32418388 GGGGTATTTCGGTCATTTTATCCTATGGGGGTATTTCGGTCATTTTACCCTTTGG-GGTATTTCG
1 GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGCCA-TTTACCCTATGGAGGTATTTCG
32418452 GTCAT
65 GTCAT
32418457 ACATGGACCA
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
80 53 0.83
81 11 0.17
ACGTcount: A:0.15, C:0.17, G:0.26, T:0.42
Consensus pattern (80 bp):
GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGCCATTTACCCTATGGAGGTATTTCGG
TCATTCTATCCTATG
Found at i:32418453 original size:53 final size:54
Alignment explanation
Indices: 32418308--32418456 Score: 221
Period size: 53 Copynumber: 2.8 Consensus size: 54
32418298 TCATCTCCTA
* *
32418308 GGGGTATTTTGGTCATTTTACCCTATGGGGGTATTTCGGCCA-TTTACCCTATG
1 GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATG
* * * *
32418361 GAGGTATTTCGGTCATTCTATCCTATGGGGGTATTTCGGTCATTTTATCCTATG
1 GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATG
*
32418415 GGGGTATTTCGGTCATTTTACCCT-TTGGGGTATTTCGGTCAT
1 GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCAT
32418457 ACATGGACCA
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 54 0.64
54 31 0.36
ACGTcount: A:0.15, C:0.17, G:0.26, T:0.42
Consensus pattern (54 bp):
GGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATG
Found at i:32424079 original size:50 final size:49
Alignment explanation
Indices: 32423961--32424201 Score: 205
Period size: 50 Copynumber: 4.8 Consensus size: 49
32423951 GATAATAACA
* * ** * * * *
32423961 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGAATGTTTCTTGT-AT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCCATCTCAG
* * ** *
32424010 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCCAATATCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCC-ATCTCAG
* * *
32424060 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTC-CATCTCAG
* * *
32424110 TGCCAACGCCATGTCCCAAACATGGTCTTACGTGGGACCTCCATAATCTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCC---ATCTC-A-G
* *
32424164 ATGCCAATGCCATGTCCTAGACATGGTCTTACGTGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
32424202 TCTCTTTACC
Statistics
Matches: 158, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
48 4 0.03
49 36 0.23
50 77 0.49
51 1 0.01
52 5 0.03
54 1 0.01
55 34 0.22
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCCATCTCAG
Found at i:32424139 original size:100 final size:104
Alignment explanation
Indices: 32423960--32424195 Score: 248
Period size: 99 Copynumber: 2.3 Consensus size: 104
32423950 TGATAATAAC
* * * ** * * * ** *
32423960 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGAATGTTTCTTGT-ATTGCCAATGCCATAT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACGCCATAT
* * **
32424024 CCCAGATATGGTCTTACATGGGAGTTCC-AATATC-A-G
66 CCCAAACATGGTCTTACATGGGACCTCCAAATATCAATG
* *
32424060 -TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACGCCATGT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACGCCATAT
* *
32424124 CCCAAACATGGTCTTACGTGGGACCTCCATAATCTCAATG
66 CCCAAACATGGTCTTACATGGGACCTCCA-AATATCAATG
*
32424164 ATGCCAATGCCATGTCCTAGACATGGTCTTAC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTAC
32424196 GTGGGATCTC
Statistics
Matches: 109, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
99 38 0.35
100 35 0.32
102 5 0.05
103 1 0.01
104 1 0.01
105 29 0.27
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (104 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACGCCATAT
CCCAAACATGGTCTTACATGGGACCTCCAAATATCAATG
Found at i:32447057 original size:12 final size:10
Alignment explanation
Indices: 32447028--32447067 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
32447018 TCAAAAATAG
32447028 TTAAAATTAA
1 TTAAAATTAA
*
32447038 TCAAAATTAA
1 TTAAAATTAA
32447048 CTATAAAATTAA
1 -T-TAAAATTAA
32447060 TTAAAATT
1 TTAAAATT
32447068 CATCATGTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 16 0.62
11 2 0.08
12 8 0.31
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (10 bp):
TTAAAATTAA
Found at i:32475498 original size:32 final size:33
Alignment explanation
Indices: 32475455--32475519 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
32475445 TCGAAAAAGA
*
32475455 AAGGAAAAGATAAAATTTTCGATGAATAGATCG
1 AAGGAAAAGATAAAATTTTCGACGAATAGATCG
*
32475488 AAGG-AAAGATAAAATTTTTGACGAATAGATCG
1 AAGGAAAAGATAAAATTTTCGACGAATAGATCG
32475520 GAGTTTACGC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 26 0.87
33 4 0.13
ACGTcount: A:0.48, C:0.06, G:0.22, T:0.25
Consensus pattern (33 bp):
AAGGAAAAGATAAAATTTTCGACGAATAGATCG
Found at i:32479415 original size:15 final size:15
Alignment explanation
Indices: 32479382--32479430 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 15
32479372 CCCGACTGTA
32479382 TTTTTTTATTTTTTCC
1 TTTTTTTATTTTTT-C
32479398 TTTTTTTATTTTTTC
1 TTTTTTTATTTTTTC
*
32479413 TTTCTTTT-TTTCTTC
1 TTT-TTTTATTTTTTC
32479428 TTT
1 TTT
32479431 CTTTCCTTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
15 13 0.42
16 18 0.58
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTTTTTATTTTTTC
Found at i:32479419 original size:19 final size:19
Alignment explanation
Indices: 32479382--32479435 Score: 69
Period size: 19 Copynumber: 3.0 Consensus size: 19
32479372 CCCGACTGTA
32479382 TTTTTTTATTTTTTC---C
1 TTTTTTTATTTTTTCTTTC
32479398 TTTTTTTATTTTTTCTTTC
1 TTTTTTTATTTTTTCTTTC
* *
32479417 TTTTTTTCTTCTTTCTTTC
1 TTTTTTTATTTTTTCTTTC
32479436 CTTCTTGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
16 15 0.45
19 18 0.55
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTTTATTTTTTCTTTC
Found at i:32479431 original size:15 final size:15
Alignment explanation
Indices: 32479397--32479453 Score: 62
Period size: 15 Copynumber: 3.8 Consensus size: 15
32479387 TTATTTTTTC
*
32479397 CTTT-TTTTATTTTTT
1 CTTTCTTTT-TTTCTT
32479412 CTTTCTTTTTTTCTT
1 CTTTCTTTTTTTCTT
**
32479427 CTTTCTTTCCTTCTT
1 CTTTCTTTTTTTCTT
*
32479442 GTTTCTTTTTTT
1 CTTTCTTTTTTT
32479454 TCTCTCTTCC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 31 0.89
16 4 0.11
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.79
Consensus pattern (15 bp):
CTTTCTTTTTTTCTT
Found at i:32480012 original size:30 final size:30
Alignment explanation
Indices: 32479973--32480100 Score: 111
Period size: 30 Copynumber: 4.4 Consensus size: 30
32479963 GAAAAATTTC
* *
32479973 GGGTTAAAATGTAAATTTAAGAAATTTTAG
1 GGGTCAAAATGTAAATTTAGGAAATTTTAG
* *
32480003 GGGTCAAAAT-T-AATGTTTGGAAATTTTAA
1 GGGTCAAAATGTAAAT-TTAGGAAATTTTAG
* * * *
32480032 GGGTCAAAATATAATTTTTGGAAACTTTAG
1 GGGTCAAAATGTAAATTTAGGAAATTTTAG
* * * *
32480062 GGGTTAAAATGTTATTTTAGGAAA-GTT-G
1 GGGTCAAAATGTAAATTTAGGAAATTTTAG
32480090 GGGTCAAAATG
1 GGGTCAAAATG
32480101 ATTTTTTTTA
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
28 14 0.17
29 24 0.29
30 42 0.51
31 2 0.02
ACGTcount: A:0.38, C:0.03, G:0.23, T:0.36
Consensus pattern (30 bp):
GGGTCAAAATGTAAATTTAGGAAATTTTAG
Found at i:32480027 original size:29 final size:30
Alignment explanation
Indices: 32479993--32480071 Score: 115
Period size: 30 Copynumber: 2.7 Consensus size: 30
32479983 GTAAATTTAA
32479993 GAAATTTTAGGGGTCAAAAT-TAATGTTTG
1 GAAATTTTAGGGGTCAAAATATAATGTTTG
* *
32480022 GAAATTTTAAGGGTCAAAATATAATTTTTG
1 GAAATTTTAGGGGTCAAAATATAATGTTTG
* *
32480052 GAAACTTTAGGGGTTAAAAT
1 GAAATTTTAGGGGTCAAAAT
32480072 GTTATTTTAG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
29 19 0.43
30 25 0.57
ACGTcount: A:0.38, C:0.04, G:0.22, T:0.37
Consensus pattern (30 bp):
GAAATTTTAGGGGTCAAAATATAATGTTTG
Found at i:32480492 original size:77 final size:77
Alignment explanation
Indices: 32480294--32480497 Score: 277
Period size: 76 Copynumber: 2.6 Consensus size: 77
32480284 ACGACCTGAA
* * *
32480294 GCTCAATTCACCTCTCGCATTATGCGTTGATTTTATTTCGAAAAAACATAAATTGAAAAATACAT
1 GCTCAACTCACCTCTCGCATTATGAGTTGA--TT-TTT-GAAAAAACAGAAATTGAAAAATACAT
*
32480359 CGACATGTGACCCGAG
62 CGACATGTGACCCAAG
* *
32480375 GCTCAACTCACCACTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATACCTC-AG
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATACATCGA-
*
32480439 CATGTG-CCTAAG
65 CATGTGACCCAAG
*
32480451 GCTCAGCTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAA
1 GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAA
32480498 TATAACATCC
Statistics
Matches: 113, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
76 50 0.44
77 31 0.27
78 3 0.03
79 2 0.02
81 27 0.24
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (77 bp):
GCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATACATCGAC
ATGTGACCCAAG
Found at i:32485537 original size:22 final size:26
Alignment explanation
Indices: 32485509--32485565 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 26
32485499 CTATTAAACA
*
32485509 GAGAGCACTAAA-GTG-TTAT-A-CG
1 GAGAGCACTAAATGTGCTAATAATCG
32485531 GAGAGCA-TAAATGTGCTAATAATCG
1 GAGAGCACTAAATGTGCTAATAATCG
32485556 GAGAGCACTA
1 GAGAGCACTA
32485566 CCGTGCTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 4 0.14
22 10 0.34
23 3 0.10
24 1 0.03
25 9 0.31
26 2 0.07
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (26 bp):
GAGAGCACTAAATGTGCTAATAATCG
Found at i:32489330 original size:75 final size:76
Alignment explanation
Indices: 32489130--32490500 Score: 1797
Period size: 75 Copynumber: 18.2 Consensus size: 76
32489120 GGAGTATTAC
* * * * ** *
32489130 ACAGAAATTGAAAAATACATCAGCGTGCGACCTAAGGCTCAACTCACCTCTCGAATTATGAGTTG
1 ACAGAAATTGAAAAATACCTCGGCATGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTG
*
32489195 GTTTTTGAAAAA
65 ATTTTTGAAAAA
** * * * * * * * * *
32489207 ACATCAATTGCAAATTAGCTCAGCATGTGCCCGAGACTCAGCTCACCTCTCTCATCATGAGTTTA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
32489272 TTTTTGAAAAA
66 TTTTTGAAAAA
* * *
32489283 ACAGAAATTGAAAAATACAT-GGCATGTGCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
32489347 TTTTT---AAA
66 TTTTTGAAAAA
** *
32489355 A-A-AAATTGAAAAATACCTCGGCATGTG-CCGAGGCTCAACTCACCTCTCGTGTTATTAGTTGA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
32489417 TTTTTG-AAAA
66 TTTTTGAAAAA
* * * *
32489427 ACATAAATTAAAAAATACCTCGACATGTGCCCGAGGCTCAACTCACCTCTCGCACTATGAGTTGA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
32489492 TTTTTG-AAAA
66 TTTTTGAAAAA
* * * * *
32489502 ATAGAAATTGAAAACTACCTCGGCATGTGCCCGATGCTCAACTCACCTCTCGCATTATCATTTGA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
32489567 TTTTTGAAAAAA
66 TTTTTG-AAAAA
* * *
32489579 ATAGAAATTAAAAAATACTTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
32489644 TTTTTGAAAAA
66 TTTTTGAAAAA
*
32489655 ACAGAAATTGAAAAATACCTCGGCATGTGCCTGAGGCTCAACTCACCTCT-GCATTATGAGTTGA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
32489719 TTTTTGAAAAA
66 TTTTTGAAAAA
* *
32489730 ACAGAAATTGAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTG
1 ACAGAAATTGAAAAATACCTCGGCATGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTG
32489795 ATTTTTG-AAAA
65 ATTTTTGAAAAA
* * * *
32489806 ACAGCAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTTGCATTATCATTTGA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
32489871 TTTTTGAAAAA
66 TTTTTGAAAAA
* * * * * *
32489882 ATAGAAATTGAAAAACACCTCAGCATGTGCCCTAGGCTCCACTCACCTCTAGCATTATGAGTTGA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
32489947 TTTTTGAAAAA
66 TTTTTGAAAAA
* *
32489958 ATAGAAATTGAAAAATACTTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
*
32490023 TTTTTTAAAAA
66 TTTTTGAAAAA
* * * *
32490034 ACAGAAATTAAAAAATACCTCAGTGTATG-ACCCGAGGCTCAACTCACTTCTCGCATTATGAGTT
1 ACAGAAATTGAAAAATACCTC-G-GCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTT
32490098 GA-TTTT-AAAAA
64 GATTTTTGAAAAA
* * * * * *
32490109 AAATAAATTGAAAAATACCTCAGCATGTGCCCCAGGCTCAACTCATCTCTCGCATTATCAGTTGA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
*
32490174 TTTTTGAAAGA
66 TTTTTGAAAAA
* * *
32490185 ACAGAAATTG-AAAATACCTTGGCATGTGCGCAAGGCTCAACTCACCTCTCGCATTATGAGTTGA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
32490249 TTTTTG-AAAA
66 TTTTTGAAAAA
* * * *
32490259 ACATAAATTGAAAAATACCTCGGCATGTGCCTGAGGCTCAACTCACCTGTCGTATTATGAGTTGA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
32490324 TTTTTG-AAAA
66 TTTTTGAAAAA
* * * *
32490334 ATAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTGAACTAATCTCTCGCATTATGAGTTGA
1 ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
32490399 TTTTT-AAAAA
66 TTTTTGAAAAA
* * * * * * * *
32490409 GATAGAAATTTAAAAATTCCTCGACATGTGCCCGGGGCTCAATTCACCTATTGCATTATGAGTTG
1 -ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTG
32490474 ATTTTTGAAAAAA
65 ATTTTTG-AAAAA
*
32490487 ATAGAAATTGAAAA
1 ACAGAAATTGAAAA
32490501 TAATTCTTGG
Statistics
Matches: 1134, Mismatches: 139, Indels: 42
0.86 0.11 0.03
Matches are distributed among these distances:
70 50 0.04
71 9 0.01
72 8 0.01
73 5 0.00
74 67 0.06
75 440 0.39
76 387 0.34
77 159 0.14
78 9 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (76 bp):
ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
TTTTTGAAAAA
Found at i:32489619 original size:152 final size:151
Alignment explanation
Indices: 32489132--32490500 Score: 1783
Period size: 151 Copynumber: 9.1 Consensus size: 151
32489122 AGTATTACAC
* * * * ** * *
32489132 AGAAATTGAAAAATACATCAGCGTGCGACCTAAGGCTCAACTCACCTCTCGAATTATGAGTTGGT
1 AGAAATTGAAAAATACCTCGGCATGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGAT
** * * * * * * *
32489197 TTTTGAAAAAACATCAATTGCAAATTAGCTCAGCATGTGCCCGAGACTCAGCTCACCTCTCTCAT
65 TTTTG-AAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAT
* * *
32489262 CATGAGTTTATTTTTGAAAAAAC
129 TATGAGTTGATTTTTGAAAAAAT
* * *
32489285 AGAAATTGAAAAATACAT-GGCATGTGCCCGAGGTTCAACTCACCTCTCGCAATATGAGTTGATT
1 AGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATT
**
32489349 TTT--AAAA-A-AAATTGAAAAATACCTCGGCATGTG-CCGAGGCTCAACTCACCTCTCGTGTTA
66 TTTGAAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTA
*
32489409 TTAGTTGATTTTTGAAAAACAT
131 TGAGTTGATTTTTGAAAAA-AT
* * *
32489431 --AAATTAAAAAATACCTCGACATGTGCCCGAGGCTCAACTCACCTCTCGCACTATGAGTTGATT
1 AGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATT
* * *
32489494 TTTGAAAAATAGAAATTGAAAACTACCTCGGCATGTGCCCGATGCTCAACTCACCTCTCGCATTA
66 TTTGAAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTA
* *
32489559 TCATTTGATTTTTGAAAAAAAT
131 TGAGTTGATTTTTG-AAAAAAT
* *
32489581 AGAAATTAAAAAATACTTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATT
1 AGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATT
*
32489646 TTTGAAAAAACAGAAATTGAAAAATACCTCGGCATGTGCCTGAGGCTCAACTCACCTCT-GCATT
66 TTTG-AAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATT
*
32489710 ATGAGTTGATTTTTGAAAAAAC
130 ATGAGTTGATTTTTGAAAAAAT
* *
32489732 AGAAATTGAAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGAT
1 AGAAATTGAAAAATACCTCGGCATGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGAT
* *
32489797 TTTTGAAAAACAGCAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTTGCATT
65 TTTTGAAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATT
* *
32489862 ATCATTTGATTTTTGAAAAAAT
130 ATGAGTTGATTTTTGAAAAAAT
* * * * *
32489884 AGAAATTGAAAAACACCTCAGCATGTGCCCTAGGCTCCACTCACCTCTAGCATTATGAGTTGATT
1 AGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATT
* *
32489949 TTTGAAAAAATAGAAATTGAAAAATACTTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATT
66 TTTG-AAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATT
* *
32490014 ATGAGTTGATTTTTTAAAAAAC
130 ATGAGTTGATTTTTGAAAAAAT
* * * *
32490036 AGAAATTAAAAAATACCTCAGTGTATG-ACCCGAGGCTCAACTCACTTCTCGCATTATGAGTTGA
1 AGAAATTGAAAAATACCTC-G-GCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
* * * * * *
32490100 -TTTTAAAAAAAATAAATTGAAAAATACCTCAGCATGTGCCCCAGGCTCAACTCATCTCTCGCAT
64 TTTTTGAAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCAT
* * *
32490164 TATCAGTTGATTTTTGAAAGAAC
129 TATGAGTTGATTTTTGAAAAAAT
* * *
32490187 AGAAATTG-AAAATACCTTGGCATGTGCGCAAGGCTCAACTCACCTCTCGCATTATGAGTTGATT
1 AGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATT
* * * *
32490251 TTTGAAAAACATAAATTGAAAAATACCTCGGCATGTGCCTGAGGCTCAACTCACCTGTCGTATTA
66 TTTGAAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTA
32490316 TGAGTTGATTTTTG-AAAAAT
131 TGAGTTGATTTTTGAAAAAAT
* * *
32490336 AGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTGAACTAATCTCTCGCATTATGAGTTGATT
1 AGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATT
* * * * * * * * *
32490401 TTTAAAAAGATAGAAATTTAAAAATTCCTCGACATGTGCCCGGGGCTCAATTCACCTATTGCATT
66 TTTGAAAA-ACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATT
32490466 ATGAGTTGATTTTTGAAAAAAAT
130 ATGAGTTGATTTTTG-AAAAAAT
32490489 AGAAATTGAAAA
1 AGAAATTGAAAA
32490501 TAATTCTTGG
Statistics
Matches: 1073, Mismatches: 121, Indels: 44
0.87 0.10 0.04
Matches are distributed among these distances:
144 14 0.01
145 84 0.08
146 21 0.02
147 5 0.00
148 9 0.01
149 70 0.07
150 175 0.16
151 300 0.28
152 273 0.25
153 118 0.11
154 4 0.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (151 bp):
AGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATT
TTTGAAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTA
TGAGTTGATTTTTGAAAAAAT
Found at i:32499668 original size:19 final size:19
Alignment explanation
Indices: 32499644--32499712 Score: 75
Period size: 19 Copynumber: 3.4 Consensus size: 19
32499634 GACTGTTTAT
*
32499644 TTTTTTTATTTTTTTCTTC
1 TTTTTTTCTTTTTTTCTTC
*
32499663 TTTTTTTCCTTTTTTCTTTC
1 TTTTTTTCTTTTTTTC-TTC
32499683 TTCTTTCCTTCTTTTTTTCTTC
1 TT-TTT--TTCTTTTTTTCTTC
*
32499705 TTTCTTTC
1 TTTTTTTC
32499713 ATTCTTCTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
19 17 0.40
20 5 0.12
21 5 0.12
22 5 0.12
23 10 0.24
ACGTcount: A:0.01, C:0.20, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTTTCTTTTTTTCTTC
Found at i:32499682 original size:23 final size:23
Alignment explanation
Indices: 32499652--32499712 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
32499642 ATTTTTTTTA
**
32499652 TTTT-TTTCTTCTTTTTTTCCTT
1 TTTTCTTTCTTCTTTCCTTCCTT
*
32499674 TTTTCTTTCTTCTTTCCTTCTTT
1 TTTTCTTTCTTCTTTCCTTCCTT
32499697 TTTTC-TTCTTTCTTTC
1 TTTTCTTTC-TTCTTTC
32499713 ATTCTTCTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 7 0.21
23 27 0.79
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTCTTTCTTCTTTCCTTCCTT
Found at i:32499717 original size:8 final size:8
Alignment explanation
Indices: 32499656--32499718 Score: 53
Period size: 8 Copynumber: 8.2 Consensus size: 8
32499646 TTTTTATTTT
32499656 TTTC-TTC
1 TTTCTTTC
*
32499663 TTTTTTTCC
1 TTTCTTT-C
32499672 TTT-TTTC
1 TTTCTTTC
32499679 TTTC-TTC
1 TTTCTTTC
*
32499686 TTTCCTTC
1 TTTCTTTC
*
32499694 TTTTTTTC
1 TTTCTTTC
32499702 -TTCTTTC
1 TTTCTTTC
*
32499709 TTTCATTC
1 TTTCTTTC
32499717 TT
1 TT
32499719 CTCTCTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
7 20 0.43
8 22 0.48
9 4 0.09
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTCTTTC
Found at i:32499719 original size:15 final size:14
Alignment explanation
Indices: 32499657--32499730 Score: 55
Period size: 15 Copynumber: 5.3 Consensus size: 14
32499647 TTTTATTTTT
32499657 TTCTTCTTT-TTT-
1 TTCTTCTTTCTTTC
* *
32499669 TCCTTTTTTCTTTC
1 TTCTTCTTTCTTTC
* *
32499683 TTCTTTCCTTCTTTTT
1 TTC-TTCTTTC-TTTC
32499699 TTCTTCTTTCTTTC
1 TTCTTCTTTCTTTC
*
32499713 ATTCTTCTCTCTTT-
1 -TTCTTCTTTCTTTC
32499727 TTCT
1 TTCT
32499731 CTCTCCTCCA
Statistics
Matches: 48, Mismatches: 9, Indels: 9
0.73 0.14 0.14
Matches are distributed among these distances:
12 7 0.15
13 7 0.15
14 5 0.10
15 23 0.48
16 6 0.12
ACGTcount: A:0.01, C:0.26, G:0.00, T:0.73
Consensus pattern (14 bp):
TTCTTCTTTCTTTC
Found at i:32499720 original size:11 final size:11
Alignment explanation
Indices: 32499656--32499730 Score: 61
Period size: 11 Copynumber: 7.1 Consensus size: 11
32499646 TTTTTATTTT
*
32499656 TTTCTTCTTTT
1 TTTCTTCTTTC
*
32499667 TTTCCTTTTTTC
1 TTT-CTTCTTTC
32499679 TTTCTTCTTTC
1 TTTCTTCTTTC
*
32499690 ---CTTCTTTT
1 TTTCTTCTTTC
32499698 TTTCTTCTTTC
1 TTTCTTCTTTC
32499709 TTTCATTC-TTC
1 TTTC-TTCTTTC
*
32499720 TCTCTT-TTTC
1 TTTCTTCTTTC
32499730 T
1 T
32499731 CTCTCCTCCA
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
8 7 0.13
10 6 0.12
11 27 0.52
12 12 0.23
ACGTcount: A:0.01, C:0.25, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTCTTCTTTC
Found at i:32500278 original size:30 final size:30
Alignment explanation
Indices: 32500216--32500329 Score: 140
Period size: 30 Copynumber: 3.8 Consensus size: 30
32500206 AAAACCTTTG
* * *
32500216 GGGTTAAAATGAAATTTT-GGGAAATTTTA
1 GGGTTAAAATGTAATTTTAGGAAAATTTAA
* * *
32500245 GGGTCAAAATATAATATTAGGAAAATTTAA
1 GGGTTAAAATGTAATTTTAGGAAAATTTAA
* *
32500275 GGGTTAAAATGTAATTTTTGGGAAAGTTTAA
1 GGGTTAAAATGTAA-TTTTAGGAAAATTTAA
32500306 GGGTTAAAATGTAATTTTAGGAAA
1 GGGTTAAAATGTAATTTTAGGAAA
32500330 GTTGGGGTTA
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
29 14 0.20
30 30 0.42
31 27 0.38
ACGTcount: A:0.41, C:0.01, G:0.23, T:0.35
Consensus pattern (30 bp):
GGGTTAAAATGTAATTTTAGGAAAATTTAA
Found at i:32500331 original size:30 final size:30
Alignment explanation
Indices: 32500216--32500344 Score: 147
Period size: 31 Copynumber: 4.4 Consensus size: 30
32500206 AAAACCTTTG
* * *
32500216 GGGTTAAAATGAAATTTTGGGAAA-TTTTA
1 GGGTTAAAATGTAATTTTAGGAAAGTTTAA
* * * *
32500245 GGGTCAAAATATAATATTAGGAAAATTTAA
1 GGGTTAAAATGTAATTTTAGGAAAGTTTAA
*
32500275 GGGTTAAAATGTAATTTTTGGGAAAGTTTAA
1 GGGTTAAAATGTAA-TTTTAGGAAAGTTTAA
*
32500306 GGGTTAAAATGTAATTTTAGGAAAG-TT-G
1 GGGTTAAAATGTAATTTTAGGAAAGTTTAA
32500334 GGGTTAAAATG
1 GGGTTAAAATG
32500345 ATATTAAAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
28 11 0.13
29 21 0.25
30 26 0.31
31 27 0.32
ACGTcount: A:0.40, C:0.01, G:0.25, T:0.35
Consensus pattern (30 bp):
GGGTTAAAATGTAATTTTAGGAAAGTTTAA
Found at i:32500338 original size:59 final size:58
Alignment explanation
Indices: 32500213--32500345 Score: 169
Period size: 59 Copynumber: 2.3 Consensus size: 58
32500203 AGCAAAACCT
* *
32500213 TTGGGGTTAAAATGAAATTTTGGGAAATTTTAGGGTCAAAATATAATATTAGGAAAAT
1 TTGGGGTTAAAATGAAATTTTGGGAAATTTAAGGGTCAAAATATAATATTAGGAAAAG
* * * * *
32500271 TTAAGGGTTAAAATGTAATTTTTGGGAAAGTTTAAGGGTTAAAATGTAATTTTAGG-AAAG
1 TT-GGGGTTAAAATG-AAATTTTGGGAAA-TTTAAGGGTCAAAATATAATATTAGGAAAAG
32500331 TTGGGGTTAAAATGA
1 TTGGGGTTAAAATGA
32500346 TATTAAAAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
58 3 0.05
59 22 0.34
60 17 0.27
61 22 0.34
ACGTcount: A:0.39, C:0.01, G:0.25, T:0.35
Consensus pattern (58 bp):
TTGGGGTTAAAATGAAATTTTGGGAAATTTAAGGGTCAAAATATAATATTAGGAAAAG
Found at i:32500663 original size:76 final size:76
Alignment explanation
Indices: 32500502--32500991 Score: 524
Period size: 76 Copynumber: 6.4 Consensus size: 76
32500492 ATTCTTTTTT
* * * * * * *
32500502 TTTTTG-AAAAATAGAAATCG-AAAATAGCTTGGCGTATGACCCGAAGCTCAACTCACCTCTCGC
1 TTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCATGTG-CCCGAGGCTCAACTCACCTCTCGC
*
32500565 ATTATGAATTGA
65 ATTATGAGTTGA
**** * * * *
32500577 TTAAAAAAAAAACATAAATTG-GAAATACCTCGG-AGTGTGACCCAAGGATCAACTCACCTCTCG
1 TTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCA-TGTG-CCCGAGGCTCAACTCACCTCTCG
32500640 CATTATGAGTTGA
64 CATTATGAGTTGA
* * ** * * * *
32500653 TTTTTGAAAAAATAGACATTGAAAAATTAATTCGGCAAGTGCCCAAGGCTAAACTCACATCTCGC
1 TTTTTGAAAAAACAGAAATTGAAAAA-TACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGC
*
32500718 ATTAAGAGTTGA
65 ATTATGAGTTGA
* * * *
32500730 TTTTTGAAAAAACAGAAATTGAAAAATAACTCGGCATGTGCCTGAGGCTCAACTCACATCTTGCA
1 TTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCA
32500795 TTATGAGTTGA
66 TTATGAGTTGA
* * * *
32500806 TTTTTGAAAAAACAGAAATTGAAAAATACCTCAGCATGTGACTCGAGGCTCAACTCATCTCTCAC
1 TTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCATGTG-CCCGAGGCTCAACTCACCTCTCGC
*
32500871 ATTATGAGTTAA
65 ATTATGAGTTGA
* * * * *
32500883 TTTTTGAAAAAATATAAATTAAAAAATACCTCGGCATGTCCCCGAGGCTCAACTCACCTCTCACA
1 TTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCA
32500948 TTATAAGAG-T-A
66 TTAT--GAGTTGA
32500959 TTTTTGAAAAAACAGAAATTGAAAAATACCTCG
1 TTTTTGAAAAAACAGAAATTGAAAAATACCTCG
32500992 CATTATGAGT
Statistics
Matches: 348, Mismatches: 59, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
75 2 0.01
76 209 0.60
77 124 0.36
78 12 0.03
79 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (76 bp):
TTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCA
TTATGAGTTGA
Found at i:32500986 original size:153 final size:151
Alignment explanation
Indices: 32500599--32500994 Score: 476
Period size: 153 Copynumber: 2.6 Consensus size: 151
32500589 CATAAATTGG
* *
32500599 AAATACCTCGG-AGTGTGACCCAAGGATCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
1 AAATACCTCGGCA-TGT-ACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
* * ** * *
32500663 AATAGACATTGAAAAATTAATTCGGCAAGTGCCCAAGGCTAAACTCACATCTCGCATTAAGAGTT
64 AACAGAAATTGAAAAA-TACCTC-GCATGTGCCCAAGGCTAAACTCACATCTCACATTAAGAGTT
* *
32500728 GATTTTTGAAAAAACAGAAATTGAA
127 AATTTTTGAAAAAACAGAAATTAAA
* * * * *
32500753 AAATAACTCGGCATGTGCCTGAGGCTCAACTCACATCTTGCATTATGAGTTGATTTTTGAAAAAA
1 AAATACCTCGGCATGTACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA
* * * *
32500818 CAGAAATTGAAAAATACCTCAGCATGTGACTCGAGGCTCAACTCATC-TCTCACATTATGAGTTA
66 CAGAAATTGAAAAATACCTC-GCATGTG-CCCAAGGCTAAACTCA-CATCTCACATTAAGAGTTA
* *
32500882 ATTTTTGAAAAAATATAAATTAAA
128 ATTTTTGAAAAAACAGAAATTAAA
* *
32500906 AAATACCTCGGCATGTCCCCGAGGCTCAACTCACCTCTCACATTATAAGAG-T-ATTTTTGAAAA
1 AAATACCTCGGCATGTACCCGAGGCTCAACTCACCTCTCGCATTAT--GAGTTGATTTTTGAAAA
32500969 AACAGAAATTGAAAAATACCTCGCAT
64 AACAGAAATTGAAAAATACCTCGCAT
32500995 TATGAGTTGA
Statistics
Matches: 209, Mismatches: 28, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
152 14 0.07
153 176 0.84
154 15 0.07
155 4 0.02
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (151 bp):
AAATACCTCGGCATGTACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA
CAGAAATTGAAAAATACCTCGCATGTGCCCAAGGCTAAACTCACATCTCACATTAAGAGTTAATT
TTTGAAAAAACAGAAATTAAA
Found at i:32501087 original size:122 final size:121
Alignment explanation
Indices: 32500870--32501112 Score: 371
Period size: 122 Copynumber: 2.0 Consensus size: 121
32500860 TCATCTCTCA
* *
32500870 CATTATGAGTTAATTTTTGAAAAAATATAAATTAAAAAATACCTCGGCATGTCCCCGAGGCTCAA
1 CATTATGAGTTAATTTTTGAAAAAATAGAAATTAAAAAATACCACGGCATGTCCCCGAGGCTCAA
32500935 CTCACCTCTCACATTATAAGAGTATTTTTGAAAAA-ACAGAAATTGAAAAATACCTCG
66 CTCACCTCTCACATTATAAGAGTATTTTTGAAAAATA-A-AAATTGAAAAATACCTCG
* * * *
32500992 CATTATGAGTTGATTTTTGAAAAAATAGAAATTGAAAAATACCACGGCATGTGCCCGAGGTTCAA
1 CATTATGAGTTAATTTTTGAAAAAATAGAAATTAAAAAATACCACGGCATGTCCCCGAGGCTCAA
* * * *
32501057 TTCACCTCTCATATTGTGAGAGTATTTTTGAAAAATAAAAATTGAAAAATACCTCG
66 CTCACCTCTCACATTATAAGAGTATTTTTGAAAAATAAAAATTGAAAAATACCTCG
32501113 GCATGTGCCC
Statistics
Matches: 110, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
121 18 0.16
122 91 0.83
123 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (121 bp):
CATTATGAGTTAATTTTTGAAAAAATAGAAATTAAAAAATACCACGGCATGTCCCCGAGGCTCAA
CTCACCTCTCACATTATAAGAGTATTTTTGAAAAATAAAAATTGAAAAATACCTCG
Found at i:32501159 original size:75 final size:75
Alignment explanation
Indices: 32500988--32501163 Score: 246
Period size: 75 Copynumber: 2.3 Consensus size: 75
32500978 TGAAAAATAC
* * *
32500988 CTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTGAAAAATACCACGGCATGTGCCCGAGGT
1 CTCGCATTATGAATTGATTTTTG-AAAAATAAAAATTGAAAAATACCACGGCATGTGCCCGAGGC
*
32501053 TCAATTCACCT
65 TCAACTCACCT
** * * *
32501064 CTCATATTGTGAGAGT-ATTTTTGAAAAATAAAAATTGAAAAATACCTCGGCATGTGCCCGAGGC
1 CTCGCATTATGA-ATTGATTTTTGAAAAATAAAAATTGAAAAATACCACGGCATGTGCCCGAGGC
32501128 TCAACTCACCT
65 TCAACTCACCT
32501139 CTCGCATTATGAATTGATTTTTGAA
1 CTCGCATTATGAATTGATTTTTGAA
32501164 NGCAGCTGCT
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
74 2 0.02
75 66 0.78
76 16 0.19
77 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31
Consensus pattern (75 bp):
CTCGCATTATGAATTGATTTTTGAAAAATAAAAATTGAAAAATACCACGGCATGTGCCCGAGGCT
CAACTCACCT
Found at i:32501251 original size:19 final size:19
Alignment explanation
Indices: 32501227--32501295 Score: 75
Period size: 19 Copynumber: 3.4 Consensus size: 19
32501217 GACTGTTTAT
*
32501227 TTTTTTTATTTTTTTCTTC
1 TTTTTTTCTTTTTTTCTTC
*
32501246 TTTTTTTCCTTTTTTCTTTC
1 TTTTTTTCTTTTTTTC-TTC
32501266 TTCTTTCCTTCTTTTTTTCTTC
1 TT-TTT--TTCTTTTTTTCTTC
*
32501288 TTTCTTTC
1 TTTTTTTC
32501296 ATTCTTCTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
19 17 0.40
20 5 0.12
21 5 0.12
22 5 0.12
23 10 0.24
ACGTcount: A:0.01, C:0.20, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTTTCTTTTTTTCTTC
Found at i:32501265 original size:23 final size:23
Alignment explanation
Indices: 32501235--32501295 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
32501225 ATTTTTTTTA
**
32501235 TTTT-TTTCTTCTTTTTTTCCTT
1 TTTTCTTTCTTCTTTCCTTCCTT
*
32501257 TTTTCTTTCTTCTTTCCTTCTTT
1 TTTTCTTTCTTCTTTCCTTCCTT
32501280 TTTTC-TTCTTTCTTTC
1 TTTTCTTTC-TTCTTTC
32501296 ATTCTTCTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 7 0.21
23 27 0.79
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTCTTTCTTCTTTCCTTCCTT
Found at i:32501300 original size:8 final size:8
Alignment explanation
Indices: 32501239--32501301 Score: 53
Period size: 8 Copynumber: 8.2 Consensus size: 8
32501229 TTTTTATTTT
32501239 TTTC-TTC
1 TTTCTTTC
*
32501246 TTTTTTTCC
1 TTTCTTT-C
32501255 TTT-TTTC
1 TTTCTTTC
32501262 TTTC-TTC
1 TTTCTTTC
*
32501269 TTTCCTTC
1 TTTCTTTC
*
32501277 TTTTTTTC
1 TTTCTTTC
32501285 -TTCTTTC
1 TTTCTTTC
*
32501292 TTTCATTC
1 TTTCTTTC
32501300 TT
1 TT
32501302 CTCTCTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
7 20 0.43
8 22 0.48
9 4 0.09
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTCTTTC
Found at i:32501302 original size:15 final size:14
Alignment explanation
Indices: 32501240--32501313 Score: 55
Period size: 15 Copynumber: 5.3 Consensus size: 14
32501230 TTTTATTTTT
32501240 TTCTTCTTT-TTT-
1 TTCTTCTTTCTTTC
* *
32501252 TCCTTTTTTCTTTC
1 TTCTTCTTTCTTTC
* *
32501266 TTCTTTCCTTCTTTTT
1 TTC-TTCTTTC-TTTC
32501282 TTCTTCTTTCTTTC
1 TTCTTCTTTCTTTC
*
32501296 ATTCTTCTCTCTTT-
1 -TTCTTCTTTCTTTC
32501310 TTCT
1 TTCT
32501314 CTCTCCTCCA
Statistics
Matches: 48, Mismatches: 9, Indels: 9
0.73 0.14 0.14
Matches are distributed among these distances:
12 7 0.15
13 7 0.15
14 5 0.10
15 23 0.48
16 6 0.12
ACGTcount: A:0.01, C:0.26, G:0.00, T:0.73
Consensus pattern (14 bp):
TTCTTCTTTCTTTC
Found at i:32501303 original size:11 final size:11
Alignment explanation
Indices: 32501239--32501313 Score: 61
Period size: 11 Copynumber: 7.1 Consensus size: 11
32501229 TTTTTATTTT
*
32501239 TTTCTTCTTTT
1 TTTCTTCTTTC
*
32501250 TTTCCTTTTTTC
1 TTT-CTTCTTTC
32501262 TTTCTTCTTTC
1 TTTCTTCTTTC
*
32501273 ---CTTCTTTT
1 TTTCTTCTTTC
32501281 TTTCTTCTTTC
1 TTTCTTCTTTC
32501292 TTTCATTC-TTC
1 TTTC-TTCTTTC
*
32501303 TCTCTT-TTTC
1 TTTCTTCTTTC
32501313 T
1 T
32501314 CTCTCCTCCA
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
8 7 0.13
10 6 0.12
11 27 0.52
12 12 0.23
ACGTcount: A:0.01, C:0.25, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTCTTCTTTC
Found at i:32501861 original size:30 final size:30
Alignment explanation
Indices: 32501799--32501912 Score: 140
Period size: 30 Copynumber: 3.8 Consensus size: 30
32501789 AAAACCTTTG
* * *
32501799 GGGTTAAAATGAAATTTT-GGGAAATTTTA
1 GGGTTAAAATGTAATTTTAGGAAAATTTAA
* * *
32501828 GGGTCAAAATATAATATTAGGAAAATTTAA
1 GGGTTAAAATGTAATTTTAGGAAAATTTAA
* *
32501858 GGGTTAAAATGTAATTTTTGGGAAAGTTTAA
1 GGGTTAAAATGTAA-TTTTAGGAAAATTTAA
32501889 GGGTTAAAATGTAATTTTAGGAAA
1 GGGTTAAAATGTAATTTTAGGAAA
32501913 GTTGGGGTTA
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
29 14 0.20
30 30 0.42
31 27 0.38
ACGTcount: A:0.41, C:0.01, G:0.23, T:0.35
Consensus pattern (30 bp):
GGGTTAAAATGTAATTTTAGGAAAATTTAA
Found at i:32501914 original size:30 final size:30
Alignment explanation
Indices: 32501799--32501927 Score: 147
Period size: 31 Copynumber: 4.4 Consensus size: 30
32501789 AAAACCTTTG
* * *
32501799 GGGTTAAAATGAAATTTTGGGAAA-TTTTA
1 GGGTTAAAATGTAATTTTAGGAAAGTTTAA
* * * *
32501828 GGGTCAAAATATAATATTAGGAAAATTTAA
1 GGGTTAAAATGTAATTTTAGGAAAGTTTAA
*
32501858 GGGTTAAAATGTAATTTTTGGGAAAGTTTAA
1 GGGTTAAAATGTAA-TTTTAGGAAAGTTTAA
*
32501889 GGGTTAAAATGTAATTTTAGGAAAG-TT-G
1 GGGTTAAAATGTAATTTTAGGAAAGTTTAA
32501917 GGGTTAAAATG
1 GGGTTAAAATG
32501928 ATATTAAAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
28 11 0.13
29 21 0.25
30 26 0.31
31 27 0.32
ACGTcount: A:0.40, C:0.01, G:0.25, T:0.35
Consensus pattern (30 bp):
GGGTTAAAATGTAATTTTAGGAAAGTTTAA
Found at i:32501921 original size:59 final size:58
Alignment explanation
Indices: 32501796--32501928 Score: 169
Period size: 59 Copynumber: 2.3 Consensus size: 58
32501786 AGCAAAACCT
* *
32501796 TTGGGGTTAAAATGAAATTTTGGGAAATTTTAGGGTCAAAATATAATATTAGGAAAAT
1 TTGGGGTTAAAATGAAATTTTGGGAAATTTAAGGGTCAAAATATAATATTAGGAAAAG
* * * * *
32501854 TTAAGGGTTAAAATGTAATTTTTGGGAAAGTTTAAGGGTTAAAATGTAATTTTAGG-AAAG
1 TT-GGGGTTAAAATG-AAATTTTGGGAAA-TTTAAGGGTCAAAATATAATATTAGGAAAAG
32501914 TTGGGGTTAAAATGA
1 TTGGGGTTAAAATGA
32501929 TATTAAAAAA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
58 3 0.05
59 22 0.34
60 17 0.27
61 22 0.34
ACGTcount: A:0.39, C:0.01, G:0.25, T:0.35
Consensus pattern (58 bp):
TTGGGGTTAAAATGAAATTTTGGGAAATTTAAGGGTCAAAATATAATATTAGGAAAAG
Found at i:32502246 original size:76 final size:76
Alignment explanation
Indices: 32502085--32502574 Score: 524
Period size: 76 Copynumber: 6.4 Consensus size: 76
32502075 ATTCTTTTTT
* * * * * * *
32502085 TTTTTG-AAAAATAGAAATCG-AAAATAGCTTGGCGTATGACCCGAAGCTCAACTCACCTCTCGC
1 TTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCATGTG-CCCGAGGCTCAACTCACCTCTCGC
*
32502148 ATTATGAATTGA
65 ATTATGAGTTGA
**** * * * *
32502160 TTAAAAAAAAAACATAAATTG-GAAATACCTCGG-AGTGTGACCCAAGGATCAACTCACCTCTCG
1 TTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCA-TGTG-CCCGAGGCTCAACTCACCTCTCG
32502223 CATTATGAGTTGA
64 CATTATGAGTTGA
* * ** * * * *
32502236 TTTTTGAAAAAATAGACATTGAAAAATTAATTCGGCAAGTGCCCAAGGCTAAACTCACATCTCGC
1 TTTTTGAAAAAACAGAAATTGAAAAA-TACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGC
*
32502301 ATTAAGAGTTGA
65 ATTATGAGTTGA
* * * *
32502313 TTTTTGAAAAAACAGAAATTGAAAAATAACTCGGCATGTGCCTGAGGCTCAACTCACATCTTGCA
1 TTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCA
32502378 TTATGAGTTGA
66 TTATGAGTTGA
* * * *
32502389 TTTTTGAAAAAACAGAAATTGAAAAATACCTCAGCATGTGACTCGAGGCTCAACTCATCTCTCAC
1 TTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCATGTG-CCCGAGGCTCAACTCACCTCTCGC
*
32502454 ATTATGAGTTAA
65 ATTATGAGTTGA
* * * * *
32502466 TTTTTGAAAAAATATAAATTAAAAAATACCTCGGCATGTCCCCGAGGCTCAACTCACCTCTCACA
1 TTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCA
32502531 TTATAAGAG-T-A
66 TTAT--GAGTTGA
32502542 TTTTTGAAAAAACAGAAATTGAAAAATACCTCG
1 TTTTTGAAAAAACAGAAATTGAAAAATACCTCG
32502575 CATTATGAGT
Statistics
Matches: 348, Mismatches: 59, Indels: 15
0.82 0.14 0.04
Matches are distributed among these distances:
75 2 0.01
76 209 0.60
77 124 0.36
78 12 0.03
79 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (76 bp):
TTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTCAACTCACCTCTCGCA
TTATGAGTTGA
Found at i:32502569 original size:153 final size:151
Alignment explanation
Indices: 32502182--32502577 Score: 476
Period size: 153 Copynumber: 2.6 Consensus size: 151
32502172 CATAAATTGG
* *
32502182 AAATACCTCGG-AGTGTGACCCAAGGATCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
1 AAATACCTCGGCA-TGT-ACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAA
* * ** * *
32502246 AATAGACATTGAAAAATTAATTCGGCAAGTGCCCAAGGCTAAACTCACATCTCGCATTAAGAGTT
64 AACAGAAATTGAAAAA-TACCTC-GCATGTGCCCAAGGCTAAACTCACATCTCACATTAAGAGTT
* *
32502311 GATTTTTGAAAAAACAGAAATTGAA
127 AATTTTTGAAAAAACAGAAATTAAA
* * * * *
32502336 AAATAACTCGGCATGTGCCTGAGGCTCAACTCACATCTTGCATTATGAGTTGATTTTTGAAAAAA
1 AAATACCTCGGCATGTACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA
* * * *
32502401 CAGAAATTGAAAAATACCTCAGCATGTGACTCGAGGCTCAACTCATC-TCTCACATTATGAGTTA
66 CAGAAATTGAAAAATACCTC-GCATGTG-CCCAAGGCTAAACTCA-CATCTCACATTAAGAGTTA
* *
32502465 ATTTTTGAAAAAATATAAATTAAA
128 ATTTTTGAAAAAACAGAAATTAAA
* *
32502489 AAATACCTCGGCATGTCCCCGAGGCTCAACTCACCTCTCACATTATAAGAG-T-ATTTTTGAAAA
1 AAATACCTCGGCATGTACCCGAGGCTCAACTCACCTCTCGCATTAT--GAGTTGATTTTTGAAAA
32502552 AACAGAAATTGAAAAATACCTCGCAT
64 AACAGAAATTGAAAAATACCTCGCAT
32502578 TATGAGTTGA
Statistics
Matches: 209, Mismatches: 28, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
152 14 0.07
153 176 0.84
154 15 0.07
155 4 0.02
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (151 bp):
AAATACCTCGGCATGTACCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAA
CAGAAATTGAAAAATACCTCGCATGTGCCCAAGGCTAAACTCACATCTCACATTAAGAGTTAATT
TTTGAAAAAACAGAAATTAAA
Found at i:32502670 original size:122 final size:121
Alignment explanation
Indices: 32502453--32502695 Score: 371
Period size: 122 Copynumber: 2.0 Consensus size: 121
32502443 TCATCTCTCA
* *
32502453 CATTATGAGTTAATTTTTGAAAAAATATAAATTAAAAAATACCTCGGCATGTCCCCGAGGCTCAA
1 CATTATGAGTTAATTTTTGAAAAAATAGAAATTAAAAAATACCACGGCATGTCCCCGAGGCTCAA
32502518 CTCACCTCTCACATTATAAGAGTATTTTTGAAAAA-ACAGAAATTGAAAAATACCTCG
66 CTCACCTCTCACATTATAAGAGTATTTTTGAAAAATA-A-AAATTGAAAAATACCTCG
* * * *
32502575 CATTATGAGTTGATTTTTGAAAAAATAGAAATTGAAAAATACCACGGCATGTGCCCGAGGTTCAA
1 CATTATGAGTTAATTTTTGAAAAAATAGAAATTAAAAAATACCACGGCATGTCCCCGAGGCTCAA
* * * *
32502640 TTCACCTCTCATATTGTGAGAGTATTTTTGAAAAATAAAAATTGAAAAATACCTCG
66 CTCACCTCTCACATTATAAGAGTATTTTTGAAAAATAAAAATTGAAAAATACCTCG
32502696 GCATGTGCCC
Statistics
Matches: 110, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
121 18 0.16
122 91 0.83
123 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (121 bp):
CATTATGAGTTAATTTTTGAAAAAATAGAAATTAAAAAATACCACGGCATGTCCCCGAGGCTCAA
CTCACCTCTCACATTATAAGAGTATTTTTGAAAAATAAAAATTGAAAAATACCTCG
Found at i:32502744 original size:197 final size:200
Alignment explanation
Indices: 32502375--32502775 Score: 596
Period size: 197 Copynumber: 2.0 Consensus size: 200
32502365 CTCACATCTT
* *
32502375 GCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATACCTCAGCATGTGACTCGAGGCTC
1 GCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATACCACAGCATGTGACCCGAGGCTC
* * *
32502440 AACTCATCTCTCACATTATGAGTTAATTTTTGAAAAAATATAAATTAAAAAATACCTCGGCATGT
66 AACTCACCTCTCACATTATGAGGTAATTTTTGAAAAAATAAAAATTAAAAAATACCTCGGCATGT
32502505 CCCCGAGGCTCAACTCACCTCTCACATTATAAGAGTATTTTTGAAAAAACAGAAATTGAAAAATA
131 CCCCGAGGCTCAACTCACCTCTCACATTATAAGAGTATTTTTGAAAAAACAGAAATTGAAAAATA
32502570 CCTC-
196 CCTCA
* * *
32502574 GCATTATGAGTTGATTTTTGAAAAAATAGAAATTGAAAAATACCACGGCATGTG-CCCGAGGTTC
1 GCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATACCACAGCATGTGACCCGAGGCTC
* * * *
32502638 AATTCACCTCTCATATTGTGAGAGT-ATTTTTG-AAAAATAAAAATTGAAAAATACCTCGGCATG
66 AACTCACCTCTCACATTATGAG-GTAATTTTTGAAAAAATAAAAATTAAAAAATACCTCGGCATG
* * * * *
32502701 TGCCCGAGGCTCAACTCACCTCTCGCATTATGA-ATTGATTTTTGAAAAAACATAAATTGAAAAA
130 TCCCCGAGGCTCAACTCACCTCTCACATTATAAGAGT-ATTTTTGAAAAAACAGAAATTGAAAAA
32502765 TACCTCA
194 TACCTCA
32502772 GCAT
1 GCAT
32502776 GTGCCCGAGG
Statistics
Matches: 182, Mismatches: 17, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
196 2 0.01
197 91 0.50
198 37 0.20
199 52 0.29
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (200 bp):
GCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATACCACAGCATGTGACCCGAGGCTC
AACTCACCTCTCACATTATGAGGTAATTTTTGAAAAAATAAAAATTAAAAAATACCTCGGCATGT
CCCCGAGGCTCAACTCACCTCTCACATTATAAGAGTATTTTTGAAAAAACAGAAATTGAAAAATA
CCTCA
Found at i:32502784 original size:76 final size:74
Alignment explanation
Indices: 32502571--32502912 Score: 490
Period size: 76 Copynumber: 4.5 Consensus size: 74
32502561 TGAAAAATAC
* *
32502571 CTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTGAAAAATACCACGGCATGTGCCCGAGGT
1 CTCGCATTATGAGTTGATTTTTGAAAAAA-A-AAATTGAAAAATACCTCGGCATGTGCCCGAGGC
*
32502636 TCAATTCACCT
64 TCAACTCACCT
** * *
32502647 CTCATATTGTGAG-AGTATTTTTGAAAAATAAAAATTGAAAAATACCTCGGCATGTGCCCGAGGC
1 CTCGCATTATGAGTTG-ATTTTTGAAAAA-AAAAATTGAAAAATACCTCGGCATGTGCCCGAGGC
32502711 TCAACTCACCT
64 TCAACTCACCT
* *
32502722 CTCGCATTATGAATTGATTTTTGAAAAAACATAAATTGAAAAATACCTCAGCATGTGCCCGAGGC
1 CTCGCATTATGAGTTGATTTTTGAAAAAA-A-AAATTGAAAAATACCTCGGCATGTGCCCGAGGC
32502787 TCAACTCACCT
64 TCAACTCACCT
* *
32502798 CTCGCATTATGAGTTGATATTTGAAAAAAAAAATT-AAAAATACCTCGGCATGTGCCTGAGGCTC
1 CTCGCATTATGAGTTGATTTTTGAAAAAAAAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTC
*
32502862 AACTCACAT
66 AACTCACCT
32502871 CTCGCATTATGAGTTGATTTTTGAAAAAACAAAAATTGAAAA
1 CTCGCATTATGAGTTGATTTTTG-AAAAA-AAAAATTGAAAA
32502913 TAATTCTTGA
Statistics
Matches: 239, Mismatches: 19, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
73 57 0.24
74 11 0.05
75 72 0.30
76 98 0.41
77 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (74 bp):
CTCGCATTATGAGTTGATTTTTGAAAAAAAAAATTGAAAAATACCTCGGCATGTGCCCGAGGCTC
AACTCACCT
Found at i:32502791 original size:273 final size:272
Alignment explanation
Indices: 32502296--32502844 Score: 768
Period size: 273 Copynumber: 2.0 Consensus size: 272
32502286 AAACTCACAT
* *
32502296 CTCGCATTAAGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATAACTCGGCATGTGCCTGAGGC
1 CTCGCATTAAGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATAACACGGCATGTGCCCGAGGC
** *
32502361 TCAACTCACATCTTGCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATACCTCAGCAT
66 TCAACTCACATCTCACATTATGAGGTGATTTTTGAAAAAACAGAAATTGAAAAATACCTCAGCAT
* * * *
32502426 GTGACTCGAGGCTCAACTCATCTCTCACATTATGAGTTAATTTTTGAAAAAATATAAATTAAAAA
131 GTGACCCGAGGCTCAACTCACCTCTCACATTATGAATTAATTTTTGAAAAAACATAAATTAAAAA
* *
32502491 ATACCTCGGCATGTCCCCGAGGCTCAACTCACCTCTCACATTATAAGAG-T-ATTTTTGAAAAAA
196 ATACCTCAGCATGTCCCCGAGGCTCAACTCACCTCTCACATTAT--GAGTTGATATTTGAAAAAA
32502554 CAGAAATTGAAAAATAC
259 -A-AAATT-AAAAATAC
* * * *
32502571 CTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTGAAAAATACCACGGCATGTGCCCGAGGT
1 CTCGCATTAAGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATAACACGGCATGTGCCCGAGGC
* * * * *
32502636 TCAATTCACCTCTCATATTGTGAGAGT-ATTTTTGAAAAATA-A-AAATTGAAAAATACCTCGGC
66 TCAACTCACATCTCACATTATGAG-GTGATTTTTGAAAAA-ACAGAAATTGAAAAATACCTCAGC
* * *
32502698 ATGTG-CCCGAGGCTCAACTCACCTCTCGCATTATGAATTGATTTTTGAAAAAACATAAATTGAA
129 ATGTGACCCGAGGCTCAACTCACCTCTCACATTATGAATTAATTTTTGAAAAAACATAAATTAAA
* *
32502762 AAATACCTCAGCATGTGCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATATTTGAAAAAA
194 AAATACCTCAGCATGTCCCCGAGGCTCAACTCACCTCTCACATTATGAGTTGATATTTGAAAAAA
32502827 AAAATTAAAAATAC
259 AAAATTAAAAATAC
32502841 CTCG
1 CTCG
32502845 GCATGTGCCT
Statistics
Matches: 245, Mismatches: 25, Indels: 13
0.87 0.09 0.05
Matches are distributed among these distances:
270 12 0.05
271 8 0.03
272 2 0.01
273 107 0.44
274 24 0.10
275 90 0.37
276 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (272 bp):
CTCGCATTAAGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATAACACGGCATGTGCCCGAGGC
TCAACTCACATCTCACATTATGAGGTGATTTTTGAAAAAACAGAAATTGAAAAATACCTCAGCAT
GTGACCCGAGGCTCAACTCACCTCTCACATTATGAATTAATTTTTGAAAAAACATAAATTAAAAA
ATACCTCAGCATGTCCCCGAGGCTCAACTCACCTCTCACATTATGAGTTGATATTTGAAAAAAAA
AATTAAAAATAC
Found at i:32502893 original size:149 final size:151
Alignment explanation
Indices: 32502571--32502912 Score: 519
Period size: 151 Copynumber: 2.3 Consensus size: 151
32502561 TGAAAAATAC
* * * *
32502571 CTCGCATTATGAGTTGATTTTTGAAAAAATAGAAATTGAAAAATACCACGGCATGTGCCCGAGGT
1 CTCGCATTATGAGTTGATTTTTGAAAAAACAAAAATTGAAAAATACCACAGCATGTGCCCGAGGC
* * * *
32502636 TCAATTCACCTCTCATATTGTGAGAGTATTTTTGAAAAATAAAAATTGAAAAATACCTCGGCATG
66 TCAACTCACCTCTCACATTATGAGAGTATATTTGAAAAATAAAAATTGAAAAATACCTCGGCATG
*
32502701 TGCCCGAGGCTCAACTCACCT
131 TGCCCGAGGCTCAACTCACAT
* * *
32502722 CTCGCATTATGAATTGATTTTTGAAAAAACATAAATTGAAAAATACCTCAGCATGTGCCCGAGGC
1 CTCGCATTATGAGTTGATTTTTGAAAAAACAAAAATTGAAAAATACCACAGCATGTGCCCGAGGC
* *
32502787 TCAACTCACCTCTCGCATTATGAG-TTGATATTTGAAAAA-AAAAATT-AAAAATACCTCGGCAT
66 TCAACTCACCTCTCACATTATGAGAGT-ATATTTGAAAAATAAAAATTGAAAAATACCTCGGCAT
*
32502849 GTGCCTGAGGCTCAACTCACAT
130 GTGCCCGAGGCTCAACTCACAT
32502871 CTCGCATTATGAGTTGATTTTTGAAAAAACAAAAATTGAAAA
1 CTCGCATTATGAGTTGATTTTTGAAAAAACAAAAATTGAAAA
32502913 TAATTCTTGA
Statistics
Matches: 174, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
149 76 0.44
150 8 0.05
151 90 0.52
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (151 bp):
CTCGCATTATGAGTTGATTTTTGAAAAAACAAAAATTGAAAAATACCACAGCATGTGCCCGAGGC
TCAACTCACCTCTCACATTATGAGAGTATATTTGAAAAATAAAAATTGAAAAATACCTCGGCATG
TGCCCGAGGCTCAACTCACAT
Found at i:32504480 original size:29 final size:28
Alignment explanation
Indices: 32504414--32504515 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
32504404 AAACTTCTAT
* * * *
32504414 GGTCAAAGTGTTATTTTAGGAAAATTTG
1 GGTCAAAATGTAATTTTAGGAAAGTTAG
*
32504442 ATGTCAAAATGTAATTTTAGGAAAGGTTAGG
1 -GGTCAAAATGTAATTTTAGGAAA-GTTA-G
*
32504473 GGTC-AAATGTAATTTAAGGAAAGTTAG
1 GGTCAAAATGTAATTTTAGGAAAGTTAG
32504500 GGTCAAAATG-AATTTT
1 GGTCAAAATGTAATTTT
32504516 TTTTTAAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
27 10 0.16
28 9 0.15
29 37 0.60
30 5 0.08
31 1 0.02
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.34
Consensus pattern (28 bp):
GGTCAAAATGTAATTTTAGGAAAGTTAG
Found at i:32505873 original size:30 final size:29
Alignment explanation
Indices: 32505811--32505895 Score: 102
Period size: 29 Copynumber: 2.9 Consensus size: 29
32505801 GTCAAAGTGA
* *
32505811 AATTTTAGGAAATTTTAGGTTCAAAATTT
1 AATTTTAGGAAAGTTTAGGTTCAAAATAT
32505840 AATTTTAGGAAAGTTTAGGAGTT-AAAATAT
1 AATTTTAGGAAAGTTTA-G-GTTCAAAATAT
* *
32505870 AATTTTTGGAAAG-TTAGGGTCAAAAT
1 AATTTTAGGAAAGTTTAGGTTCAAAAT
32505896 GATATTATTA
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
27 2 0.04
28 6 0.12
29 19 0.39
30 19 0.39
31 3 0.06
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.39
Consensus pattern (29 bp):
AATTTTAGGAAAGTTTAGGTTCAAAATAT
Found at i:32506254 original size:76 final size:76
Alignment explanation
Indices: 32506084--32506595 Score: 683
Period size: 75 Copynumber: 6.7 Consensus size: 76
32506074 TGACCCGAAC
* * * *
32506084 CTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTAAAAAAACATAAATTGGAAAATACCTTG
1 CTCAACTCACCTCTCGCATTATGAGTTGA---TTTTTGAAAAAACAGAAATTGAAAAATACCTCG
*
32506149 G-AGTGTAACCCGAGG
63 GCA-TGT-GCCCGAGG
* * * *
32506164 CTTAACTTACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAATTTGAAAAATACCTCAGCA
1 CTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCA
32506229 TGTGCCCGAGG
66 TGTGCCCGAGG
* * *
32506240 CTAAACTCACCTCTCGCATTTTGAGTTGATTTTTGAAAAAATAGAAATTGAAAAATACCTCGGCA
1 CTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCA
32506305 TGTGCCCGAGG
66 TGTGCCCGAGG
* * * * *
32506316 CTCAACTCACCTCTCGCATTCTGACTTAATTTTTG-AAAAACATAAATTGAAAAATACCTCAGCA
1 CTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCA
32506380 TGTGCCCGAGG
66 TGTGCCCGAGG
*
32506391 CTCAACTCACCTCTCCCATTATGAGTTGATTTTTG-AAAAACAGAAATTGAAAAATACCTCGGCA
1 CTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCA
*
32506455 TGTGCCCGACG
66 TGTGCCCGAGG
* * * *
32506466 CTCAACTCACCTCACGCATTATGAGTTGATTTTTGAAAAAAATATAAATTTAAAAATATCC-CGG
1 CTCAACTCACCTCTCGCATTATGAGTTGATTTTTG-AAAAAACAGAAATTGAAAAATA-CCTCGG
*
32506530 CATTTGCCCGAGG
64 CATGTGCCCGAGG
* * *
32506543 CTCAACTCACCTCTCGCATTATAATTTGATTTTTG-AAACACAGAAATTGAAAA
1 CTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAA
32506596 TAATTCTTGA
Statistics
Matches: 385, Mismatches: 43, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
75 152 0.39
76 108 0.28
77 95 0.25
78 3 0.01
80 27 0.07
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.29
Consensus pattern (76 bp):
CTCAACTCACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAAATACCTCGGCA
TGTGCCCGAGG
Found at i:32506544 original size:227 final size:228
Alignment explanation
Indices: 32506084--32506595 Score: 708
Period size: 227 Copynumber: 2.2 Consensus size: 228
32506074 TGACCCGAAC
* * * * *
32506084 CTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTAAAAAAACATAAATTGGAAAATACCTTG
1 CTCAACTCACCTCTCGCATTATGACTT-A--ATTTTT-GAAAAACATAAATTGAAAAATACCTAG
* * * * *
32506149 GAGTGTAACCCGAGGCTTAACTTACCTCTCGCATTATGAGTTGATTTTTGAAAAAACAGAATTTG
62 CAGTGTAACCCGAGGCTCAACTCACCTCTCCCATTATGAGTTGATTTTTGAAAAAACAGAAATTG
* * *
32506214 AAAAATACCTCAGCATGTGCCCGAGGCTAAACTCACCTCTCGCATTTTGAGTTGATTTTTGAAAA
127 AAAAATACCTCAGCATGTGCCCGACGCTAAACTCACCTCACGCATTATGAGTTGATTTTTGAAAA
32506279 AATAGAAATTGAAAAATACCTCGGCATGTGCCCGAGG
192 AATAGAAATTGAAAAATACCTCGGCATGTGCCCGAGG
*
32506316 CTCAACTCACCTCTCGCATTCTGACTTAATTTTTGAAAAACATAAATTGAAAAATACCTCAGCA-
1 CTCAACTCACCTCTCGCATTATGACTTAATTTTTGAAAAACATAAATTGAAAAATACCT-AGCAG
*
32506380 TGT-GCCCGAGGCTCAACTCACCTCTCCCATTATGAGTTGATTTTTG-AAAAACAGAAATTGAAA
65 TGTAACCCGAGGCTCAACTCACCTCTCCCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAA
* *
32506443 AATACCTCGGCATGTGCCCGACGCTCAACTCACCTCACGCATTATGAGTTGATTTTTGAAAAAAA
130 AATACCTCAGCATGTGCCCGACGCTAAACTCACCTCACGCATTATGAGTTGATTTTTG-AAAAAA
* * *
32506508 TATAAATTTAAAAATATCC-CGGCATTTGCCCGAGG
194 TAGAAATTGAAAAATA-CCTCGGCATGTGCCCGAGG
* * * * *
32506543 CTCAACTCACCTCTCGCATTATAATTTGATTTTTGAAACACAGAAATTGAAAA
1 CTCAACTCACCTCTCGCATTATGACTTAATTTTTGAAAAACATAAATTGAAAA
32506596 TAATTCTTGA
Statistics
Matches: 251, Mismatches: 26, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
226 69 0.27
227 121 0.48
228 28 0.11
229 7 0.03
231 1 0.00
232 25 0.10
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.29
Consensus pattern (228 bp):
CTCAACTCACCTCTCGCATTATGACTTAATTTTTGAAAAACATAAATTGAAAAATACCTAGCAGT
GTAACCCGAGGCTCAACTCACCTCTCCCATTATGAGTTGATTTTTGAAAAAACAGAAATTGAAAA
ATACCTCAGCATGTGCCCGACGCTAAACTCACCTCACGCATTATGAGTTGATTTTTGAAAAAATA
GAAATTGAAAAATACCTCGGCATGTGCCCGAGG
Found at i:32508114 original size:30 final size:30
Alignment explanation
Indices: 32508078--32508169 Score: 107
Period size: 30 Copynumber: 3.1 Consensus size: 30
32508068 AAATGCAGTA
* *
32508078 AAAATTTTAGGTTCAAAGTGTAATTTTGGG
1 AAAATTTTAGGTTCAAAATGTAATTTTAGG
* *
32508108 AAAATTTGATG-TCAAAATGTAATTTTAGG
1 AAAATTTTAGGTTCAAAATGTAATTTTAGG
* *
32508137 -AAAGTTTAGGGTTTAAAATGTAATTTTAGG
1 AAAATTTTA-GGTTCAAAATGTAATTTTAGG
32508167 AAA
1 AAA
32508170 GTTTAGGCGT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
28 6 0.12
29 17 0.33
30 26 0.51
31 2 0.04
ACGTcount: A:0.39, C:0.02, G:0.21, T:0.38
Consensus pattern (30 bp):
AAAATTTTAGGTTCAAAATGTAATTTTAGG
Found at i:32508196 original size:29 final size:30
Alignment explanation
Indices: 32508121--32508201 Score: 121
Period size: 30 Copynumber: 2.7 Consensus size: 30
32508111 ATTTGATGTC
32508121 AAAATGTAATTTTAGGAAAGTTTAGGGTTT
1 AAAATGTAATTTTAGGAAAGTTTAGGGTTT
32508151 AAAATGTAATTTTAGGAAAGTTTAGGCG-TT
1 AAAATGTAATTTTAGGAAAGTTTAGG-GTTT
* *
32508181 -AAATGTTATTTAAGGAAAGTT
1 AAAATGTAATTTTAGGAAAGTT
32508202 GGGGTCAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
29 19 0.40
30 28 0.58
31 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.22, T:0.38
Consensus pattern (30 bp):
AAAATGTAATTTTAGGAAAGTTTAGGGTTT
Found at i:32520223 original size:27 final size:27
Alignment explanation
Indices: 32520193--32520256 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 27
32520183 TACGGAGTTT
* *
32520193 GCCACAAAGGCATTCCTTTCATGTTCC
1 GCCACAAAGGCATTCCTTTCATATTAC
* **
32520220 GCCA-AAAGGGATTTTTTTCATATTAC
1 GCCACAAAGGCATTCCTTTCATATTAC
*
32520246 ACCACAAAGGC
1 GCCACAAAGGC
32520257 TGTCATTGCA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
26 20 0.69
27 9 0.31
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (27 bp):
GCCACAAAGGCATTCCTTTCATATTAC
Found at i:32524725 original size:11 final size:11
Alignment explanation
Indices: 32524698--32524734 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
32524688 TATATTTTTT
32524698 TATTTTT-AAA
1 TATTTTTAAAA
32524708 -A-TTTTAAAA
1 TATTTTTAAAA
32524717 TATTTTTAAAA
1 TATTTTTAAAA
32524728 TATTTTT
1 TATTTTT
32524735 TTTATTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
8 4 0.17
9 4 0.17
10 1 0.04
11 15 0.62
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:32530274 original size:5 final size:5
Alignment explanation
Indices: 32530266--32530293 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
32530256 TTGTTTTTTT
32530266 AAAGA AAAGA AAAGA AAAGA AAAGA AAA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAA
32530294 AGTGGAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:32536605 original size:13 final size:13
Alignment explanation
Indices: 32536587--32536625 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
32536577 TGGCTCAAGC
32536587 CAAAACAAAAAAA
1 CAAAACAAAAAAA
32536600 CAAAACAAACAAAA
1 CAAAACAAA-AAAA
*
32536614 AAAATACAAAAA
1 CAAA-ACAAAAA
32536626 GCTTATGGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 9 0.39
14 9 0.39
15 5 0.22
ACGTcount: A:0.82, C:0.15, G:0.00, T:0.03
Consensus pattern (13 bp):
CAAAACAAAAAAA
Found at i:32539076 original size:20 final size:20
Alignment explanation
Indices: 32539061--32539108 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
32539051 ATGTGCTGTT
32539061 AAGGGCACCGAAGTGCATTC
1 AAGGGCACCGAAGTGCATTC
* *
32539081 AAGGACACCGAAGTG-TTTAC
1 AAGGGCACCGAAGTGCATT-C
32539101 AAGGGCAC
1 AAGGGCAC
32539109 TGGGGTGCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.33, C:0.23, G:0.29, T:0.15
Consensus pattern (20 bp):
AAGGGCACCGAAGTGCATTC
Found at i:32561530 original size:79 final size:77
Alignment explanation
Indices: 32561379--32561534 Score: 276
Period size: 79 Copynumber: 2.0 Consensus size: 77
32561369 TTGTCTATAA
*
32561379 TTTTCCTTTTGAAAGAAATTGTTTATCTTTTAGAAAAAAATTTCAAATATTGATAGTTTTCACAA
1 TTTTCCTTTTGAAAGAAATCGTTTATCTTTTAGAAAAAAATTTCAAATATTGATAGTTTTCACAA
32561444 AACGTAGTTTTT
66 AACGTAGTTTTT
*
32561456 TTTTCCTTTTGAAAGAAATCGTTTATCTTTTAGAAAAAAAAATTTCAAATATTGATAGTTTTCAG
1 TTTTCCTTTTGAAAGAAATCGTTTATCTTTTAG--AAAAAAATTTCAAATATTGATAGTTTTCAC
32561521 AAAACGTAGTTTTT
64 AAAACGTAGTTTTT
32561535 CAGTTAAACA
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
77 32 0.43
79 43 0.57
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.44
Consensus pattern (77 bp):
TTTTCCTTTTGAAAGAAATCGTTTATCTTTTAGAAAAAAATTTCAAATATTGATAGTTTTCACAA
AACGTAGTTTTT
Found at i:32564960 original size:27 final size:27
Alignment explanation
Indices: 32564930--32564987 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
32564920 ACAAAATATT
*
32564930 CATTTCATGC-ATTCCATGCAACCCATG
1 CATTTCATGCGAAT-CATGCAACCCATG
* *
32564957 CATTTTATGCGAATCATGCATCCCATG
1 CATTTCATGCGAATCATGCAACCCATG
32564984 CATT
1 CATT
32564988 ATGCTACATG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (27 bp):
CATTTCATGCGAATCATGCAACCCATG
Found at i:32565217 original size:39 final size:39
Alignment explanation
Indices: 32565108--32565217 Score: 175
Period size: 39 Copynumber: 2.8 Consensus size: 39
32565098 TTAAATATGC
* *
32565108 GTCTTAAATATTGCACTTTAATTATGAGTCATTAAATGT
1 GTCTTAAATACTGCACTTTAATTATGAGTCTTTAAATGT
*
32565147 GTCTTAAATACTGCACTTTAATTATAAGTCTTTAAATGT
1 GTCTTAAATACTGCACTTTAATTATGAGTCTTTAAATGT
* *
32565186 GTCTTAAACACTGCACTTTAATTATGTGTCTT
1 GTCTTAAATACTGCACTTTAATTATGAGTCTT
32565218 AGTTTTTACA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.44
Consensus pattern (39 bp):
GTCTTAAATACTGCACTTTAATTATGAGTCTTTAAATGT
Found at i:32565634 original size:16 final size:16
Alignment explanation
Indices: 32565613--32565646 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
32565603 CTATTGAAAC
32565613 CATTCAATTCCATGCA
1 CATTCAATTCCATGCA
32565629 CATTCAATTCCATGCA
1 CATTCAATTCCATGCA
32565645 CA
1 CA
32565647 CTTCTTAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.32, G:0.06, T:0.29
Consensus pattern (16 bp):
CATTCAATTCCATGCA
Found at i:32571113 original size:27 final size:27
Alignment explanation
Indices: 32571060--32571113 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
32571050 CAAGTTTGGG
* *
32571060 CATGCACTCCATGCAAAATATGGATTT
1 CATGCACTCCATGCAAAACATGCATTT
* **
32571087 CATGCATTCCATGCAACCCATGCATTT
1 CATGCACTCCATGCAAAACATGCATTT
32571114 TATGTGGACC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.30
Consensus pattern (27 bp):
CATGCACTCCATGCAAAACATGCATTT
Found at i:32577557 original size:32 final size:32
Alignment explanation
Indices: 32577516--32577593 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
32577506 ATCTAGATTT
*
32577516 TTGCCACAAAGGCTGACCTTTACATCCAGTAC
1 TTGCCACAAAGGCTGACCTTTACATCCAATAC
* * * *
32577548 TTGCCACAAAAGCTGTCTTTTACATTCAATAC
1 TTGCCACAAAGGCTGACCTTTACATCCAATAC
*
32577580 TTGCCATAAAGGCT
1 TTGCCACAAAGGCT
32577594 TTCATGTCCA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (32 bp):
TTGCCACAAAGGCTGACCTTTACATCCAATAC
Found at i:32577588 original size:93 final size:93
Alignment explanation
Indices: 32577457--32577650 Score: 237
Period size: 93 Copynumber: 2.1 Consensus size: 93
32577447 CCAAAGTTTC
* * * * * *
32577457 GCCACAAAGGTTGTCCTTTATATCCAATACTCGCCATAAAATCTTTCCTATCTAGATTTTTGCCA
1 GCCACAAAAGCTGTCCTTTACATCCAATACTCGCCATAAAAGCTTTCATATCCAGATTTTTGCCA
32577522 CAA-AGGCTGACCTTTACATCCAGTACTT
66 CAACA-GCTGACCTTTACATCCAGTACTT
* * * * *
32577550 GCCACAAAAGCTGTCTTTTACATTCAATACTTGCCATAAAGGCTTTCATGTCCAGATTTTTGCCA
1 GCCACAAAAGCTGTCCTTTACATCCAATACTCGCCATAAAAGCTTTCATATCCAGATTTTTGCCA
* **
32577615 CAACAGTTGTTCTTTACATCCAGTACTT
66 CAACAGCTGACCTTTACATCCAGTACTT
*
32577643 ACCACAAA
1 GCCACAAA
32577651 GGTTTTCTTG
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
93 84 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (93 bp):
GCCACAAAAGCTGTCCTTTACATCCAATACTCGCCATAAAAGCTTTCATATCCAGATTTTTGCCA
CAACAGCTGACCTTTACATCCAGTACTT
Found at i:32577631 original size:61 final size:61
Alignment explanation
Indices: 32577548--32577664 Score: 146
Period size: 61 Copynumber: 1.9 Consensus size: 61
32577538 CATCCAGTAC
* * *
32577548 TTGCCACAAAAGCTGTCTTTTACATTCAATACTTGCCATAAAGGCTTTCATGTCCAGATTT
1 TTGCCACAAAAGCTGTCTTTTACATCCAATACTTACCACAAAGGCTTTCATGTCCAGATTT
* * * * *
32577609 TTGCCACAACAGTTGT-TCTTTACATCCAGTACTTACCACAAAGGTTTTCTTGTCCA
1 TTGCCACAAAAGCTGTCT-TTTACATCCAATACTTACCACAAAGGCTTTCATGTCCA
32577665 NAAATAAACA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
60 1 0.02
61 46 0.98
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (61 bp):
TTGCCACAAAAGCTGTCTTTTACATCCAATACTTACCACAAAGGCTTTCATGTCCAGATTT
Found at i:32579553 original size:32 final size:32
Alignment explanation
Indices: 32579512--32579589 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
32579502 ATCTAGATTT
*
32579512 TTGCCACAAAGGCTGACCTTTACATCCAGTAC
1 TTGCCACAAAGGCTGACCTTTACATCCAATAC
* * * *
32579544 TTGCCACAAAAGCTGTCTTTTACATTCAATAC
1 TTGCCACAAAGGCTGACCTTTACATCCAATAC
*
32579576 TTGCCATAAAGGCT
1 TTGCCACAAAGGCT
32579590 TTCATGTCCA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (32 bp):
TTGCCACAAAGGCTGACCTTTACATCCAATAC
Found at i:32579584 original size:93 final size:93
Alignment explanation
Indices: 32579453--32579646 Score: 237
Period size: 93 Copynumber: 2.1 Consensus size: 93
32579443 CCAAAGTTTC
* * * * * *
32579453 GCCACAAAGGTTGTCCTTTATATCCAATACTCGCCATAAAATCTTTCCTATCTAGATTTTTGCCA
1 GCCACAAAAGCTGTCCTTTACATCCAATACTCGCCATAAAAGCTTTCATATCCAGATTTTTGCCA
32579518 CAA-AGGCTGACCTTTACATCCAGTACTT
66 CAACA-GCTGACCTTTACATCCAGTACTT
* * * * *
32579546 GCCACAAAAGCTGTCTTTTACATTCAATACTTGCCATAAAGGCTTTCATGTCCAGATTTTTGCCA
1 GCCACAAAAGCTGTCCTTTACATCCAATACTCGCCATAAAAGCTTTCATATCCAGATTTTTGCCA
* **
32579611 CAACAGTTGTTCTTTACATCCAGTACTT
66 CAACAGCTGACCTTTACATCCAGTACTT
*
32579639 ACCACAAA
1 GCCACAAA
32579647 GGTTTTCTTG
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
93 84 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (93 bp):
GCCACAAAAGCTGTCCTTTACATCCAATACTCGCCATAAAAGCTTTCATATCCAGATTTTTGCCA
CAACAGCTGACCTTTACATCCAGTACTT
Found at i:32579627 original size:61 final size:60
Alignment explanation
Indices: 32579544--32579807 Score: 251
Period size: 61 Copynumber: 4.3 Consensus size: 60
32579534 CATCCAGTAC
* * * * * * *
32579544 TTGCCACAAAAGCTG-TCTTTTACATTCAATACTTGCCATAAAGGCTTTCATGTCCAGATTT
1 TTGCCAC-AAAGTTGTTC-TTTACATCCAGTACTTACCACAAAGGCTTTCTTGTCCAGAGTT
* * *
32579605 TTGCCACAACAGTTGTTCTTTACATCCAGTACTTACCACAAAGGTTTTCTTGTCCAAAATT
1 TTGCCACAA-AGTTGTTCTTTACATCCAGTACTTACCACAAAGGCTTTCTTGTCCAGAGTT
* * * ** * *
32579666 TTTCCACAAAGGTTGTTATTTACATCTAGTACTCGCCACAAAGGCTTTCTTATCTAGAGTT
1 TTGCCACAAA-GTTGTTCTTTACATCCAGTACTTACCACAAAGGCTTTCTTGTCCAGAGTT
* * * * * * *
32579727 TTGCCATAAAGGCTGTCCTTTCCATCCAGTACTTACTACAAAGGCTTTCCTGTCTAGAGTT
1 TTGCCACAAA-GTTGTTCTTTACATCCAGTACTTACCACAAAGGCTTTCTTGTCCAGAGTT
*
32579788 TTGCCACAAAGTTTTTCTTT
1 TTGCCACAAAGTTGTTCTTT
32579808 TAGCTGGTGT
Statistics
Matches: 165, Mismatches: 35, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
60 10 0.06
61 153 0.93
62 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (60 bp):
TTGCCACAAAGTTGTTCTTTACATCCAGTACTTACCACAAAGGCTTTCTTGTCCAGAGTT
Found at i:32579768 original size:122 final size:122
Alignment explanation
Indices: 32579573--32579798 Score: 283
Period size: 122 Copynumber: 1.9 Consensus size: 122
32579563 TTACATTCAA
* * * * * *
32579573 TACTTGCCATAAAGGCTTTCATGTCCAGATTTTTGCCACAACAGTTGTTCTTTACATCCAGTACT
1 TACTCGCCACAAAGGCTTTCATATCCAGAGTTTTGCCACAACAGCTGTCCTTTACATCCAGTACT
* * *
32579638 TACCACAAAGGTTTTCTTGTCCAAAATTTTTCCACAAAGGTTGTTATTTACATCTAG
66 TACCACAAAGGCTTTCCTGTCCAAAATTTTGCCACAAAGGTTGTTATTTACATCTAG
* * * *
32579695 TACTCGCCACAAAGGCTTTCTTATCTAGAGTTTTGCCATAA-AGGCTGTCCTTTCCATCCAGTAC
1 TACTCGCCACAAAGGCTTTCATATCCAGAGTTTTGCCACAACA-GCTGTCCTTTACATCCAGTAC
* * * *
32579759 TTACTACAAAGGCTTTCCTGTCTAGAGTTTTGCCACAAAG
65 TTACCACAAAGGCTTTCCTGTCCAAAATTTTGCCACAAAG
32579799 TTTTTCTTTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
121 1 0.01
122 85 0.99
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (122 bp):
TACTCGCCACAAAGGCTTTCATATCCAGAGTTTTGCCACAACAGCTGTCCTTTACATCCAGTACT
TACCACAAAGGCTTTCCTGTCCAAAATTTTGCCACAAAGGTTGTTATTTACATCTAG
Found at i:32579982 original size:53 final size:53
Alignment explanation
Indices: 32579924--32580029 Score: 140
Period size: 53 Copynumber: 2.0 Consensus size: 53
32579914 TTAAATTTTC
* * *
32579924 CCATATGATGCCATAACCCACCAGTTACGGTCTTACACGATATGGTCTTCTTT
1 CCATATGATGCCATAACCCACCAATTACAGTCTTACACGATATGGTCTACTTT
* * * * *
32579977 CCATATGATGTCATAACCCACTAATTATAGTTTTACACGATATTGTCTACTTT
1 CCATATGATGCCATAACCCACCAATTACAGTCTTACACGATATGGTCTACTTT
32580030 ACTGTCATGA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (53 bp):
CCATATGATGCCATAACCCACCAATTACAGTCTTACACGATATGGTCTACTTT
Found at i:32594935 original size:4 final size:4
Alignment explanation
Indices: 32594926--32594968 Score: 50
Period size: 4 Copynumber: 10.5 Consensus size: 4
32594916 TCTGTTCTTG
* * *
32594926 AAGA AAGA AAGA AAGA AAAA AAGAA AAAA AATA AAGA AAGA AA
1 AAGA AAGA AAGA AAGA AAGA AAG-A AAGA AAGA AAGA AAGA AA
32594969 AAAAAGGGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
4 30 0.91
5 3 0.09
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.02
Consensus pattern (4 bp):
AAGA
Found at i:32594943 original size:12 final size:12
Alignment explanation
Indices: 32594926--32594972 Score: 67
Period size: 12 Copynumber: 3.8 Consensus size: 12
32594916 TCTGTTCTTG
*
32594926 AAGAAAGAAAGA
1 AAGAAAAAAAGA
32594938 AAGAAAAAAAGA
1 AAGAAAAAAAGA
*
32594950 AAAAAAATAAAGA
1 AAGAAAA-AAAGA
32594963 AAGAAAAAAA
1 AAGAAAAAAA
32594973 AGGGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
12 20 0.65
13 11 0.35
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (12 bp):
AAGAAAAAAAGA
Found at i:32598735 original size:44 final size:43
Alignment explanation
Indices: 32598687--32598783 Score: 106
Period size: 44 Copynumber: 2.2 Consensus size: 43
32598677 TAATTTCAGA
*
32598687 GAGATAAGA-TCCATCATTCTAATCTACTCCACTACAACTTTAGG
1 GAGATAAGATTCC-TCATTC-AATCTACCCCACTACAACTTTAGG
* * * * *
32598731 GAGATAGGATTTGCTCATTCAGTCTACCCCACTGCAATTTTAGG
1 GAGATAAGA-TTCCTCATTCAATCTACCCCACTACAACTTTAGG
32598775 GAGATAAGA
1 GAGATAAGA
32598784 CCAGATGCGA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
44 36 0.82
45 6 0.14
46 2 0.05
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.29
Consensus pattern (43 bp):
GAGATAAGATTCCTCATTCAATCTACCCCACTACAACTTTAGG
Found at i:32599190 original size:44 final size:42
Alignment explanation
Indices: 32599142--32599641 Score: 466
Period size: 44 Copynumber: 11.8 Consensus size: 42
32599132 ACCTGCTATT
*
32599142 TTCAACCTATTCCACTGCTGACTAGGGAGATAGGACCTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-CT-CAATC
* * *
32599186 TTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA--CTCAATC
* *
32599230 TTCAACCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA--CTCAATC
* * * * * *
32599274 TTTAACCTATACCACTGTTGTCCAGGGATATAGGA-T---TG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAATC
* * * *
32599312 TTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA--CTCAATC
* *
32599356 TTCAACCTATTCCACTGCTGACTAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA--CTCAATC
* * * *
32599400 TTTAACCTATACCACTGTTGTCCAGGGAGATAGGA-T---TC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAATC
* * * *
32599438 TTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA--CTCAATC
*
32599482 TTCAACCTATTCCACTGCTGACTAGGGAGATAGGA-T---TC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAATC
* * * *
32599520 TTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA--CTCAATC
* *
32599564 TTCAACCTATTCCACTGCTGACCATGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA--CTCAATC
*
32599608 TTTAACCTATTCCACTGCTGACCAGGGAGATAGG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGG
32599642 GCTAGGGTTA
Statistics
Matches: 377, Mismatches: 60, Indels: 38
0.79 0.13 0.08
Matches are distributed among these distances:
38 94 0.25
41 4 0.01
44 277 0.73
45 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (42 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAATC
Found at i:32599343 original size:126 final size:126
Alignment explanation
Indices: 32599189--32599641 Score: 675
Period size: 126 Copynumber: 3.6 Consensus size: 126
32599179 TACAATCTTC
32599189 AATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACTA
1 AATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACTA
* *
32599254 GGGAGATAGGATTCACAATCTTTAACCTATACCACTGTTGTCCAGGGATATAGGATTGTTT
66 GGGAGATAGGATTCACAATCTTTAACCTATACCACTGTTGTCCAGGGAGATAGGATTATTT
32599315 AATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACTA
1 AATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACTA
*
32599380 GGGAGATAGGATTCACAATCTTTAACCTATACCACTGTTGTCCAGGGAGATAGGATTCTTT
66 GGGAGATAGGATTCACAATCTTTAACCTATACCACTGTTGTCCAGGGAGATAGGATTATTT
32599441 AATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACTA
1 AATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACTA
* * * * *
32599506 GGGAGATAGGA-T-----TCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCT
66 GGGAGATAGGATTCACAATCTTTAACCTATACCACTGTTGTCCAGGGAGATAGGA-T-T--AT-T
32599565 T
126 T
* * * * * * *
32599566 CAACCTATTCCACTGCTGACCATGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACC
1 -AATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACT
32599631 AGGGAGATAGG
65 AGGGAGATAGG
32599642 GCTAGGGTTA
Statistics
Matches: 306, Mismatches: 15, Indels: 12
0.92 0.05 0.04
Matches are distributed among these distances:
120 32 0.10
121 1 0.00
122 1 0.00
124 1 0.00
125 3 0.01
126 268 0.88
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (126 bp):
AATCTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACTA
GGGAGATAGGATTCACAATCTTTAACCTATACCACTGTTGTCCAGGGAGATAGGATTATTT
Found at i:32599355 original size:82 final size:82
Alignment explanation
Indices: 32599148--32599641 Score: 285
Period size: 82 Copynumber: 5.9 Consensus size: 82
32599138 TATTTTCAAC
* * * * * *
32599148 CTATTCCACTGCTGACTAGGGAGATAGGA-CCTACAATCTTCAATCTATTCCACTGCTGCCCAGG
1 CTATTCCACTGCTGACCAGGGAGATAGAATTC-ACAATCTTCAACCTATACCACTGCTGACCAGG
* * *
32599212 GAGATAGAATTCTCAATCTTCAAC
65 GAGATAGGA-T-T--GT-TT-AAT
* * * * *
32599236 CTATTCCACTGCTGACTAGGGAGATAGGATTCACAATCTTTAACCTATACCACTGTTGTCCAGGG
1 CTATTCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATACCACTGCTGACCAGGG
*
32599301 ATATAGGATTGTTTAAT
66 AGATAGGATTGTTTAAT
* * * *
32599318 CTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACTAGGG
1 CTATTCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATACCACTGCTGACCAGGG
* *
32599383 AGATAGGATTCACAATCTTTAAC
66 AGATAGGA-T-----TGTTTAAT
* * * * * * *
32599406 CTATACCACTGTTGTCCAGGGAGATAGGATT--C--T-TT-AATCTATTCCACTGCTGCCCAGGG
1 CTATTCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATACCACTGCTGACCAGGG
* * *
32599465 AGATAGAATTCTCAATCTTCAAC
66 AGATAGGA-T-T--GT-TT-AAT
* * * * *
32599488 CTATTCCACTGCTGACTAGGGAGATAGGATT--C--T-TT-AATCTATTCCACTGCTGCCCAGGG
1 CTATTCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATACCACTGCTGACCAGGG
* * *
32599547 AGATAGAATTCTCAATCTTCAAC
66 AGATAGGA-T-T--GT-TT-AAT
* * * *
32599570 CTATTCCACTGCTGACCATGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACCAGGG
1 CTATTCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATACCACTGCTGACCAGGG
32599635 AGATAGG
66 AGATAGG
32599642 GCTAGGGTTA
Statistics
Matches: 348, Mismatches: 41, Indels: 34
0.82 0.10 0.08
Matches are distributed among these distances:
78 1 0.00
80 1 0.00
81 2 0.01
82 205 0.59
83 5 0.01
84 3 0.01
86 3 0.01
87 3 0.01
88 124 0.36
89 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (82 bp):
CTATTCCACTGCTGACCAGGGAGATAGAATTCACAATCTTCAACCTATACCACTGCTGACCAGGG
AGATAGGATTGTTTAAT
Found at i:32599700 original size:88 final size:87
Alignment explanation
Indices: 32599655--32600134 Score: 636
Period size: 88 Copynumber: 5.5 Consensus size: 87
32599645 AGGGTTATCA
* * *
32599655 ATCTGCTTCGCTGTCGGTGCAGAAAGGCAAGATCTGCTATTTTTAACCTGCTCTGCTGCAACCCA
1 ATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCA
* *
32599720 GGGAGGCAATGCTAGTGTCTTTG
66 GGGAGGCAAGGCT-GGGTCTTTG
* * * *
32599743 ATCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCTGCTGCAACCAA
1 ATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCA
* *
32599808 GGGAGGCAAGGCTGGTGTATTCG
66 GGGAGGCAAGGCTGG-GTCTTTG
* * *
32599831 ATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTGCAACCCT
1 ATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCA
32599896 GGGAGGCAAGGCTGGTGTCTTTG
66 GGGAGGCAAGGCTGG-GTCTTTG
* *
32599919 ATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGTAACCCA
1 ATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCA
* *
32599984 GGGAGGTAAGGTTGGTGTCTTTG
66 GGGAGGCAAGGCTGG-GTCTTTG
* * * ** **
32600007 ATCTGTTTCGTTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTACTATGCTATAACCCA
1 ATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCA
* **
32600072 AGGAGGCAAGGCTGGTGTCTTCA
66 GGGAGGCAAGGCTGG-GTCTTTG
* **
32600095 ATCTGCTTCGCTGTCGGTATAGGAAGGCAAGATCTGCTAT
1 ATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTAT
32600135 CTTCACTGAT
Statistics
Matches: 349, Mismatches: 42, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
87 1 0.00
88 348 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (87 bp):
ATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCA
GGGAGGCAAGGCTGGGTCTTTG
Found at i:32599815 original size:44 final size:43
Alignment explanation
Indices: 32599679--32599989 Score: 138
Period size: 44 Copynumber: 7.1 Consensus size: 43
32599669 CGGTGCAGAA
32599679 AGGCAAGATCTGCTATTTTTAACCTGCTCTGCTGCAACCCAGGG
1 AGGCAAGATCTGCTATTTTTAACCTGCTCTGCTGCAA-CCAGGG
* * * * *
32599723 AGGC-A-A--TGCTAGTGTCTTTGATCTGCT-TCGTTGTCAATGCAGGA
1 AGGCAAGATCTGCTA-T-T-TTTAACCTGCTCT-GCTG-CAA-CCAGGG
32599767 AGGCAAGATCTGCTATTTTTAACCTGCTCTGCTGCAACCAAGGG
1 AGGCAAGATCTGCTATTTTTAACCTGCTCTGCTGCAACC-AGGG
* * * * ** * *** *
32599811 AGGCAAG-GCTGGTGTATTCGATCTGCT-TCGCTGTCGGTGCAGGA
1 AGGCAAGATCTGCTATTTTTAACCTGCTCT-GCTG-C-AACCAGGG
*
32599855 AGGCAAGATCTGCTATTTTTAACCTGCT-TCGCTGCAACCCTGGG
1 AGGCAAGATCTGCTATTTTTAACCTGCTCT-GCTGCAA-CCAGGG
* * * * * * ** *
32599899 AGGCAAG-GCTGGTGTCTTTGATCTGCT-TCGCTGTCAGTGCAGGA
1 AGGCAAGATCTGCTATTTTTAACCTGCTCT-GCTG-CA-ACCAGGG
** *
32599943 AGGCAAGATCTGCTATTTTTAACCTGCTCCACTGTAACCCAGGG
1 AGGCAAGATCTGCTATTTTTAACCTGCTCTGCTGCAA-CCAGGG
32599987 AGG
1 AGG
32599990 TAAGGTTGGT
Statistics
Matches: 190, Mismatches: 56, Indels: 42
0.66 0.19 0.15
Matches are distributed among these distances:
40 5 0.03
41 1 0.01
42 4 0.02
43 51 0.27
44 70 0.37
45 50 0.26
46 3 0.02
47 1 0.01
48 5 0.03
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (43 bp):
AGGCAAGATCTGCTATTTTTAACCTGCTCTGCTGCAACCAGGG
Found at i:32600079 original size:264 final size:264
Alignment explanation
Indices: 32599655--32600134 Score: 773
Period size: 264 Copynumber: 1.8 Consensus size: 264
32599645 AGGGTTATCA
* **
32599655 ATCTGCTTCGCTGTCGGTGCAGAAAGGCAAGATCTGCTATTTTTAACCTGCTCTGCTGCAACCCA
1 ATCTGCTTCGCTGTCAGTGCAGAAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGCAACCCA
*
32599720 GGGAGGCAATGCTAGTGTCTTTGATCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTGCTATTT
66 GGGAGGCAAGGCTAGTGTCTTTGATCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTGCTATTT
* * * * *
32599785 TTAACCTGCTCTGCTGCAACCAAGGGAGGCAAGGCTGGTGTATTCGATCTGCTTCGCTGTCGGTG
131 TTAACCTACTATGCTACAACCAAGGGAGGCAAGGCTGGTGTATTCAATCTGCTTCGCTGTCGGTA
32599850 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTGCAACCCTGGGAGGCAAGGCTGGTGTC
196 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTGCAACCCTGGGAGGCAAGGCTGGTGTC
32599915 TTTG
261 TTTG
* *
32599919 ATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGTAACCCA
1 ATCTGCTTCGCTGTCAGTGCAGAAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGCAACCCA
* * * * *
32599984 GGGAGGTAAGGTTGGTGTCTTTGATCTGTTTCGTTGTCAGTGCAGGAAGGCAAGATCTGCTATTT
66 GGGAGGCAAGGCTAGTGTCTTTGATCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTGCTATTT
* *
32600049 TTAACCTACTATGCTATAACCCAA-GGAGGCAAGGCTGGTGTCTTCAATCTGCTTCGCTGTCGGT
131 TTAACCTACTATGCTACAA-CCAAGGGAGGCAAGGCTGGTGTATTCAATCTGCTTCGCTGTCGGT
*
32600113 ATAGGAAGGCAAGATCTGCTAT
195 ACAGGAAGGCAAGATCTGCTAT
32600135 CTTCACTGAT
Statistics
Matches: 196, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
264 192 0.98
265 4 0.02
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (264 bp):
ATCTGCTTCGCTGTCAGTGCAGAAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGCAACCCA
GGGAGGCAAGGCTAGTGTCTTTGATCTGCTTCGTTGTCAATGCAGGAAGGCAAGATCTGCTATTT
TTAACCTACTATGCTACAACCAAGGGAGGCAAGGCTGGTGTATTCAATCTGCTTCGCTGTCGGTA
CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTTCGCTGCAACCCTGGGAGGCAAGGCTGGTGTC
TTTG
Found at i:32605784 original size:20 final size:20
Alignment explanation
Indices: 32605761--32605798 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32605751 ATGAAACCAT
32605761 AAATAAATAGAA-AATAAACA
1 AAATAAATA-AAGAATAAACA
*
32605781 AAATATATAAAGAATAAA
1 AAATAAATAAAGAATAAA
32605799 GGTACATGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (20 bp):
AAATAAATAAAGAATAAACA
Found at i:32606265 original size:14 final size:13
Alignment explanation
Indices: 32606239--32606281 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
32606229 CCATTTAATT
*
32606239 AAAAAATAAATAA
1 AAAAAAAAAATAA
32606252 AAAACAAAAAATAA
1 AAAA-AAAAAATAA
*
32606266 AAAAAAGAAATAA
1 AAAAAAAAAATAA
32606279 AAA
1 AAA
32606282 GGGACCAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 15 0.56
14 12 0.44
ACGTcount: A:0.86, C:0.02, G:0.02, T:0.09
Consensus pattern (13 bp):
AAAAAAAAAATAA
Found at i:32615114 original size:50 final size:50
Alignment explanation
Indices: 32615059--32615187 Score: 170
Period size: 50 Copynumber: 2.6 Consensus size: 50
32615049 CATTGAGATT
* * * *
32615059 ATGAGAGGTCTCATGTAAGACCATGTCTTGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
* *
32615109 ATGAGAGGTTCCCA-GTAAGACCATGTCTGGGACATGGCATGGGCACTGAT
1 ATGAGAGG-TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
* *
32615159 ATGAGAGCTCCCATGTAAGACCATATCTG
1 ATGAGAGGTCCCATGTAAGACCATGTCTG
32615188 CAATATGGCA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
49 5 0.07
50 60 0.87
51 4 0.06
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAG
Found at i:32615196 original size:50 final size:49
Alignment explanation
Indices: 32615058--32615252 Score: 164
Period size: 50 Copynumber: 3.9 Consensus size: 49
32615048 TCATTGAGAT
* * *
32615058 TATGAGAGGTCTCATGTAAGACCATGTCTTGGACATGGCGTTGGCACCGA
1 TATGAGAGCTCCCATGTAAGACCATGTC-TGGACATGGCATTGGCACCGA
* * * *
32615108 GATGAGAGGTTCCCA-GTAAGACCATGTCTGGGACATGGCATGGGCACTGA
1 TATGAGA-GCTCCCATGTAAGACCATGTCT-GGACATGGCATTGGCACCGA
* * *
32615158 TATGAGAGCTCCCATGTAAGACCATATCTGCAATATGGCATTGGCA--G-
1 TATGAGAGCTCCCATGTAAGACCATGTCTG-GACATGGCATTGGCACCGA
* * * * *
32615205 TACTGAAAACATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 TA-TGAGAGC-TCCCATGTAAGACCATGTCT-GGACATGGCATTGGCA
32615253 TGTATTATCA
Statistics
Matches: 118, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
47 2 0.02
48 6 0.05
49 37 0.31
50 68 0.58
51 5 0.04
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (49 bp):
TATGAGAGCTCCCATGTAAGACCATGTCTGGACATGGCATTGGCACCGA
Found at i:32615478 original size:12 final size:13
Alignment explanation
Indices: 32615452--32615481 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
32615442 ATGAGTTATT
32615452 TAAGTAAAGCAAG
1 TAAGTAAAGCAAG
32615465 TAAGTAAA-CAAG
1 TAAGTAAAGCAAG
32615477 TAAGT
1 TAAGT
32615482 GAGTAAGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (13 bp):
TAAGTAAAGCAAG
Found at i:32621611 original size:23 final size:23
Alignment explanation
Indices: 32621585--32621659 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
32621575 TGATTTTTAA
*
32621585 ATTTTGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
*
32621608 ATTTAAAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
*
32621631 ATTTAGGATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
*
32621654 ACTTAG
1 ATTTAG
32621660 GAAAAATCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.37, C:0.01, G:0.13, T:0.48
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:32621612 original size:13 final size:13
Alignment explanation
Indices: 32621594--32621659 Score: 65
Period size: 13 Copynumber: 5.5 Consensus size: 13
32621584 AATTTTGAAT
32621594 TATTTAGTGATAA
1 TATTTAGTGATAA
32621607 TATTTA---A-AA
1 TATTTAGTGATAA
32621616 TTATTTAGTGATAA
1 -TATTTAGTGATAA
32621630 TATTTAG-GAT--
1 TATTTAGTGATAA
32621640 TATTTAGTGATAA
1 TATTTAGTGATAA
*
32621653 TACTTAG
1 TATTTAG
32621660 GAAAAATCTA
Statistics
Matches: 44, Mismatches: 1, Indels: 16
0.72 0.02 0.26
Matches are distributed among these distances:
9 2 0.05
10 14 0.32
11 3 0.07
12 3 0.07
13 20 0.45
14 2 0.05
ACGTcount: A:0.38, C:0.02, G:0.14, T:0.47
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:32621645 original size:10 final size:11
Alignment explanation
Indices: 32621592--32621650 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 11
32621582 TAAATTTTGA
32621592 ATTATTTAGTG
1 ATTATTTAGTG
**
32621603 ATAATATTTA-AA
1 AT--TATTTAGTG
32621615 ATTATTTAGTG
1 ATTATTTAGTG
32621626 ATAATATTTAG-G
1 AT--TATTTAGTG
32621638 ATTATTTAGTG
1 ATTATTTAGTG
32621649 AT
1 AT
32621651 AATACTTAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
10 13 0.34
11 7 0.18
12 5 0.13
13 13 0.34
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (11 bp):
ATTATTTAGTG
Found at i:32633606 original size:19 final size:18
Alignment explanation
Indices: 32633581--32633635 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 18
32633571 ATATTTAATT
32633581 TTTTTTCTATATTTTTAA
1 TTTTTTCTATATTTTTAA
* *
32633599 TGTTTTTCTATTTTTTTCA
1 T-TTTTTCTATATTTTTAA
* *
32633618 TTTTTTTTATAATTTTAA
1 TTTTTTCTATATTTTTAA
32633636 AAATTCTTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
18 14 0.47
19 16 0.53
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTTTTCTATATTTTTAA
Done.