Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 104 of 153
Found at i:32633692 original size:19 final size:18
Alignment explanation
Indices: 32633647--32633696 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
32633637 AATTCTTATA
*
32633647 TTTTTATTTTTTTGAAAC
1 TTTTAATTTTTTTGAAAC
32633665 TTTTGAATTTTATTT-AAATC
1 TTTT-AATTTT-TTTGAAA-C
32633685 TTTTAATTTTTT
1 TTTTAATTTTTT
32633697 ATTTTTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 6 0.21
19 14 0.50
20 8 0.29
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.68
Consensus pattern (18 bp):
TTTTAATTTTTTTGAAAC
Found at i:32645135 original size:42 final size:39
Alignment explanation
Indices: 32645089--32645169 Score: 117
Period size: 42 Copynumber: 2.0 Consensus size: 39
32645079 AGGGTAAATC
* *
32645089 CAACAACCCAAGTTTATCTTCTTCTTTTCTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTT-TT-TTTT-AAAATTCTTTTTT
32645131 CAACAACCCAAGATTATCTTTTTTTTAAAATTCTTTTTT
1 CAACAACCCAAGATTATCTTTTTTTTAAAATTCTTTTTT
32645170 TCTAGGATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
39 12 0.32
40 4 0.11
41 2 0.05
42 19 0.51
ACGTcount: A:0.27, C:0.21, G:0.02, T:0.49
Consensus pattern (39 bp):
CAACAACCCAAGATTATCTTTTTTTTAAAATTCTTTTTT
Found at i:32647190 original size:21 final size:21
Alignment explanation
Indices: 32647160--32647211 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
32647150 CTTGATGTCT
*
32647160 CGACACCACTATCTTATGACA
1 CGACATCACTATCTTATGACA
* *
32647181 TGACATCACTATCTTATGACG
1 CGACATCACTATCTTATGACA
32647202 CGACATCACT
1 CGACATCACT
32647212 GACAGTCTCC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.27
Consensus pattern (21 bp):
CGACATCACTATCTTATGACA
Found at i:32647423 original size:24 final size:23
Alignment explanation
Indices: 32647371--32647433 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
32647361 GCACAACCCA
**
32647371 ACTTTTTAACTCT-AAAAGCACCT
1 ACTTTTTAAC-CTAAAAAAAACCT
*
32647394 AGTTTTTAACCTAAAAAAAACACT
1 ACTTTTTAACCTAAAAAAAAC-CT
* *
32647418 ACTTTTAAACATAAAA
1 ACTTTTTAACCTAAAA
32647434 TTACACTATT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
22 2 0.06
23 15 0.47
24 15 0.47
ACGTcount: A:0.46, C:0.19, G:0.03, T:0.32
Consensus pattern (23 bp):
ACTTTTTAACCTAAAAAAAACCT
Found at i:32648958 original size:76 final size:76
Alignment explanation
Indices: 32648865--32649009 Score: 254
Period size: 76 Copynumber: 1.9 Consensus size: 76
32648855 TGTTTATAGA
* * *
32648865 ACTCTTGATTAATAACTGCAATGAATTTTCTTCTCTGCACAACTCGCAACATCTATGTCTAGAGT
1 ACTCTGGATTAATAACTGCAATGAATGTTCTTCTCTGCACAACTCGAAACATCTATGTCTAGAGT
32648930 GCTAGGAAAAT
66 GCTAGGAAAAT
*
32648941 ACTCTGGATTAATAACTGCAATGAATGTTCTTCTCTGCACAACTTGAAACATCTATGTCTAGAGT
1 ACTCTGGATTAATAACTGCAATGAATGTTCTTCTCTGCACAACTCGAAACATCTATGTCTAGAGT
32649006 GCTA
66 GCTA
32649010 CAAATATTCT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 65 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (76 bp):
ACTCTGGATTAATAACTGCAATGAATGTTCTTCTCTGCACAACTCGAAACATCTATGTCTAGAGT
GCTAGGAAAAT
Found at i:32649315 original size:29 final size:29
Alignment explanation
Indices: 32649267--32649324 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
32649257 AGGAAAAGTA
*
32649267 AACACCAAATTTGAACCATTCATCAACAT
1 AACACCAAATTTAAACCATTCATCAACAT
*
32649296 AACACCAAATTTAAATCATTCATCAACAT
1 AACACCAAATTTAAACCATTCATCAACAT
32649325 TTAAAGAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.47, C:0.26, G:0.02, T:0.26
Consensus pattern (29 bp):
AACACCAAATTTAAACCATTCATCAACAT
Found at i:32649752 original size:12 final size:12
Alignment explanation
Indices: 32649737--32649767 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
32649727 GAAATTTCCA
*
32649737 TGGCAATTCTAT
1 TGGCAATACTAT
32649749 TGGCAATACTAT
1 TGGCAATACTAT
32649761 TGGCAAT
1 TGGCAAT
32649768 CAATGTCACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (12 bp):
TGGCAATACTAT
Found at i:32652931 original size:25 final size:24
Alignment explanation
Indices: 32652896--32652958 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
32652886 TAACAAGAAG
* *
32652896 GAAAAATTAAATGAATTTAGTGAA
1 GAAAAATTAAATGAATTAAATGAA
* **
32652920 TAAAAATATAAAAAAATTAAATGAA
1 GAAAAAT-TAAATGAATTAAATGAA
32652945 GAAAAATTTAAATG
1 GAAAAA-TTAAATG
32652959 CAGGAGAAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
24 6 0.21
25 22 0.76
26 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.11, T:0.27
Consensus pattern (24 bp):
GAAAAATTAAATGAATTAAATGAA
Found at i:32652955 original size:16 final size:18
Alignment explanation
Indices: 32652930--32652972 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 18
32652920 TAAAAATATA
*
32652930 AAAAAATTAAATG-A-AG
1 AAAAATTTAAATGCAGAG
32652946 AAAAATTTAAATGCAGGAG
1 AAAAATTTAAATGCA-GAG
32652965 AAAAATTT
1 AAAAATTT
32652973 TAATTATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 12 0.52
17 1 0.04
19 10 0.43
ACGTcount: A:0.60, C:0.02, G:0.14, T:0.23
Consensus pattern (18 bp):
AAAAATTTAAATGCAGAG
Found at i:32664986 original size:58 final size:58
Alignment explanation
Indices: 32664916--32665039 Score: 203
Period size: 58 Copynumber: 2.1 Consensus size: 58
32664906 ATCCATAACA
* *
32664916 AAAACATGCTCCCGACTTTGATCAACATTCACCAAAATGCCTTTTGTTGCAATCAACG
1 AAAACAAGCTCCCGACTTTGATCAACATTCACCAAAATGCCTTTTCTTGCAATCAACG
* *
32664974 AAAACAAGCTCCCTACTTTGATCAACATTCACCAAAATGCCTTTTCTTGCAATCATCG
1 AAAACAAGCTCCCGACTTTGATCAACATTCACCAAAATGCCTTTTCTTGCAATCAACG
*
32665032 CAAACAAG
1 AAAACAAG
32665040 AACGATTCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 61 1.00
ACGTcount: A:0.35, C:0.28, G:0.10, T:0.27
Consensus pattern (58 bp):
AAAACAAGCTCCCGACTTTGATCAACATTCACCAAAATGCCTTTTCTTGCAATCAACG
Found at i:32668159 original size:47 final size:47
Alignment explanation
Indices: 32667972--32668238 Score: 390
Period size: 49 Copynumber: 5.6 Consensus size: 47
32667962 TTAAACCCAT
32667972 ATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGATGA
32668021 ATGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATGA
* *
32668070 ATGTGAAAGTGTATACATACGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGTGATGA
32668119 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
32668166 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
32668213 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
32668239 TCCCGAAGGG
Statistics
Matches: 200, Mismatches: 14, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
47 96 0.48
49 101 0.50
51 3 0.01
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:32668413 original size:37 final size:37
Alignment explanation
Indices: 32668357--32668435 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32668347 CCGAGCTCTA
* * *
32668357 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
32668394 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32668431 AAGAC
1 AAGAC
32668436 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32681902 original size:14 final size:14
Alignment explanation
Indices: 32681883--32681909 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32681873 TGATTCGATA
32681883 TAACCTTTTATGAT
1 TAACCTTTTATGAT
32681897 TAACCTTTTATGA
1 TAACCTTTTATGA
32681910 AATAATCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.48
Consensus pattern (14 bp):
TAACCTTTTATGAT
Found at i:32686578 original size:132 final size:131
Alignment explanation
Indices: 32686331--32687921 Score: 2451
Period size: 132 Copynumber: 12.1 Consensus size: 131
32686321 CAACTTTAGA
* * * *
32686331 GAGATAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGACTCGTCGA-CCT
1 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCG-C-ATCTT
* * ** *
32686395 CGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTATTGCTT
64 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTC
32686460 AGG
129 AGG
* * * *
32686463 GAGACAAGGTTTGGTGGCTTAAATCTGCTTCCTACTATCTTAGAAAGATAAGATTCACCATCTTC
1 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTC-GCATCTTC
* * * * *
32686528 GATTTGCTCCACTACTGCTTAGGGAGATAAGATCAATAATCTTTAACCTTCTCTGCTGCTGCTCA
65 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCA
32686593 GG
130 GG
32686595 GAGACAAGGCTTGGTGGCTTAAATCTGCTTAAATATGCTTCCCACTATCTTGGAAAGATAAGATT
1 GAGACAAGGCTTGGTGGCTTAAA--T-C-------TGCTTCCCACTATCTTGGAAAGATAAGATT
* * **
32686660 CGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACACTCTTCAACCTTCTCTA
56 CG-CATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCG
*
32686725 CTGCTGCTCAGA
120 CTGCTGCTCAGG
* *
32686737 GTGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAG---CGA---G--TCTTCG
1 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCATCTTCG
* **
32686794 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACACTCTTCAACCTTCTCTACTGCTGCTCAG
66 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAG
*
32686859 A
131 G
*
32686860 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAG---CGA---G--TCTTCG
1 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCATCTTCG
* *
32686917 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACACTCTTCAACCTTCTCCACTGCTGCTCAG
66 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAG
32686982 G
131 G
*
32686983 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTC
1 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCG-CATCTTC
*
32687048 GATCTGCTCCACTACGGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCA
65 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCA
32687113 GG
130 GG
*
32687115 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGTCGTCTTC
1 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCG-CATCTTC
* * *
32687180 AATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACACTCTTCAACCTTCTCCACTGCTGCTCA
65 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCA
32687245 GG
130 GG
*
32687247 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGTAGTCTTC
1 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCA-TCTTC
32687312 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCA
65 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCA
32687377 GG
130 GG
*
32687379 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGTAGTCTTC
1 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCA-TCTTC
32687444 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCA
65 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCA
32687509 GG
130 GG
*
32687511 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGTAGTCTTC
1 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCA-TCTTC
32687576 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCA
65 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCA
32687641 GG
130 GG
*
32687643 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGTAGTCTTC
1 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCA-TCTTC
32687708 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCA
65 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCA
32687773 GG
130 GG
**
32687775 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGTCGCCTTC
1 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCG-CATCTTC
* *
32687840 GATCTGCTCCACTACTGCTTAAGGAGATAAGATCTACAATCTTCAACCTTCTCCACTGCTGCTCA
65 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCA
32687905 GG
130 GG
*
32687907 GAGACAAGACTTGGT
1 GAGACAAGGCTTGGT
32687922 TACCGATCTG
Statistics
Matches: 1382, Mismatches: 53, Indels: 48
0.93 0.04 0.03
Matches are distributed among these distances:
123 239 0.17
126 3 0.00
129 3 0.00
131 1 0.00
132 1015 0.73
134 1 0.00
135 1 0.00
139 1 0.00
140 1 0.00
142 117 0.08
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (131 bp):
GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCATCTTCG
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAG
G
Found at i:32690227 original size:41 final size:41
Alignment explanation
Indices: 32690170--32690252 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
32690160 ATCTAAGACA
32690170 TAGTCAATAGCTAGTCTCCTCAATGTCCTCTTATCATTCTC
1 TAGTCAATAGCTAGTCTCCTCAATGTCCTCTTATCATTCTC
32690211 TAGTCAATAGCTAGTCTCCTCAATGTCCTCTTATCATTCTC
1 TAGTCAATAGCTAGTCTCCTCAATGTCCTCTTATCATTCTC
32690252 T
1 T
32690253 GTTGCCTGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.22, C:0.29, G:0.10, T:0.40
Consensus pattern (41 bp):
TAGTCAATAGCTAGTCTCCTCAATGTCCTCTTATCATTCTC
Found at i:32695555 original size:40 final size:40
Alignment explanation
Indices: 32695507--32695652 Score: 240
Period size: 40 Copynumber: 3.7 Consensus size: 40
32695497 GCAAACACAT
*
32695507 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAACCCGGATATATCAACTCGCATAA
* * *
32695547 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAACCCGGATATATCAACTCGCATAA
*
32695587 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAACCCGGATATATCAACTCGCATAA
32695627 TTGCCTTCGGGTCTT-ACCCGGATATA
1 TTGCCTTCGGGTCTTAACCCGGATATA
32695653 ATCCAATGTT
Statistics
Matches: 99, Mismatches: 7, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 10 0.10
40 89 0.90
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAACCCGGATATATCAACTCGCATAA
Found at i:32703127 original size:109 final size:109
Alignment explanation
Indices: 32702936--32703149 Score: 383
Period size: 109 Copynumber: 2.0 Consensus size: 109
32702926 CAAAAATCAT
**
32702936 ATCTTGAGTTTCACAACTCGAAAATCAGTTTTGTGATTTTTCCCTGAAACTAGACTCATATCCCC
1 ATCTTGAGTTTCACAACTCGAAAATCAGTTTTGTGATTTTTCCCCAAAACTAGACTCATATCCCC
32703001 ACCTATGTATTTTTTTCTAGAATTTTTGGTCGGGCCAATTTCAG
66 ACCTATGTATTTTTTTCTAGAATTTTTGGTCGGGCCAATTTCAG
* *
32703045 ATCTTGAGTTTTACAACTCGAAAATCAGTTTTGTGATTTTTCCCCAAAACTAGACTCATGTCCCC
1 ATCTTGAGTTTCACAACTCGAAAATCAGTTTTGTGATTTTTCCCCAAAACTAGACTCATATCCCC
*
32703110 ACCTATGTATTTTTTTCTAGAATTTTTTGTCGGGCCAATT
66 ACCTATGTATTTTTTTCTAGAATTTTTGGTCGGGCCAATT
32703150 AGTACAGTTT
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
109 100 1.00
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (109 bp):
ATCTTGAGTTTCACAACTCGAAAATCAGTTTTGTGATTTTTCCCCAAAACTAGACTCATATCCCC
ACCTATGTATTTTTTTCTAGAATTTTTGGTCGGGCCAATTTCAG
Found at i:32704356 original size:40 final size:40
Alignment explanation
Indices: 32704308--32704414 Score: 187
Period size: 40 Copynumber: 2.7 Consensus size: 40
32704298 GCAAACACAT
* *
32704308 TTGCCTTCGGGTCTTAACCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
32704348 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
32704388 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
32704415 ATCCAATGCT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:32720506 original size:54 final size:54
Alignment explanation
Indices: 32720443--32720611 Score: 180
Period size: 65 Copynumber: 2.9 Consensus size: 54
32720433 TTGATTAGGT
* *
32720443 TTTATGAAAAATTAAATTAGGGTATTATGTTTTTAATTG-TATAGGGTTTTAAGG
1 TTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTA-AGGGTTTTAAGG
32720497 TTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTAAGGGTTTCTGGGCTTAATTAGGG
1 TTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTAAGGG--T-T----TT-A--A-GG
*
32720562 TTTAGGAAAAATTAAATCAGGGTATTAGGTTTTTAATTGTTTAA-GGTTTT
1 TTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTG-TTAAGGGTTTT
32720612 GGGATTTGAT
Statistics
Matches: 99, Mismatches: 3, Indels: 22
0.80 0.02 0.18
Matches are distributed among these distances:
54 41 0.41
55 2 0.02
56 1 0.01
57 1 0.01
58 2 0.02
61 2 0.02
62 2 0.02
63 1 0.01
64 1 0.01
65 42 0.42
66 4 0.04
ACGTcount: A:0.31, C:0.02, G:0.22, T:0.44
Consensus pattern (54 bp):
TTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTAAGGGTTTTAAGG
Found at i:32720645 original size:130 final size:130
Alignment explanation
Indices: 32720496--32720740 Score: 382
Period size: 130 Copynumber: 1.9 Consensus size: 130
32720486 GGGTTTTAAG
* * *
32720496 GTTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTAAGGGTTTCTGGGCTTAATTAGG
1 GTTTAGGAAAAATTAAATTACGGTATTAAGTTTTTAATTGTTAAGGGTTTCTGGGCTTAATTAAG
* *
32720561 GTTTAGGAAAAATTAAATCAGGGTATTAGGTTTTTAATTGTTTAAGGTTTTGGGATTTGATTAGT
66 GATTAGAAAAAATTAAATCAGGGTATTAGGTTTTTAATTGTTTAAGGTTTTGGGATTTGATTAGT
** * * * *
32720626 GTTTAGGAAATTTTAAATTACGGTATTAAGTTTTTAATTGTTTAGGGTTTTTGGGTTTGATTAAG
1 GTTTAGGAAAAATTAAATTACGGTATTAAGTTTTTAATTGTTAAGGGTTTCTGGGCTTAATTAAG
*
32720691 GATTAGAAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGGTTT
66 GATTAGAAAAAATTAAATCAGGGTATTAGGTTTTTAATTGTTTAAGGTTT
32720741 AATTACTTTT
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
130 103 1.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.45
Consensus pattern (130 bp):
GTTTAGGAAAAATTAAATTACGGTATTAAGTTTTTAATTGTTAAGGGTTTCTGGGCTTAATTAAG
GATTAGAAAAAATTAAATCAGGGTATTAGGTTTTTAATTGTTTAAGGTTTTGGGATTTGATTAGT
Found at i:32720740 original size:65 final size:65
Alignment explanation
Indices: 32720491--32720740 Score: 344
Period size: 65 Copynumber: 3.8 Consensus size: 65
32720481 GTATAGGGTT
* * *
32720491 TTAAGGTTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTG-TTAAGGGTTTCTGGGCTTA
1 TTAAGGTTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAA-GGTTTTTGGGTTTG
32720555 A
65 A
* *
32720556 TTAGGGTTTAGGAAAAATTAAATCAGGGTATTAGGTTTTTAATTGTTTAAGG-TTTTGGGATTTG
1 TTAAGGTTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGGTTTTTGGG-TTTG
32720620 A
65 A
** * * *
32720621 TT-AGTGTTTAGGAAATTTTAAATTACGGTATTAAGTTTTTAATTGTTTAGGGTTTTTGGGTTTG
1 TTAAG-GTTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGGTTTTTGGGTTTG
32720685 A
65 A
* *
32720686 TTAAGGATTAGAAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGGTTT
1 TTAAGGTTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGGTTT
32720741 AATTACTTTT
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
64 7 0.04
65 141 0.88
66 13 0.08
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.45
Consensus pattern (65 bp):
TTAAGGTTTAGGAAAAATTAAATTAGGGTATTAGGTTTTTAATTGTTTAAGGTTTTTGGGTTTGA
Found at i:32724798 original size:113 final size:113
Alignment explanation
Indices: 32724640--32724862 Score: 301
Period size: 114 Copynumber: 2.0 Consensus size: 113
32724630 GATTCACAAA
32724640 AAGCGCCGCAAAAAAATAAGGCCAACAACGTCGTTTATTGAG-TTTTTGGGCCATTAGCGGCGTT
1 AAGCGCCGCAAAAAAATAAGGCCAACAACGTCGTTTATTGAGTTTTTTGGGCCATTAGCGGCGTT
*
32724704 TT-TACAAAAGCGCCGCTAATGCTCTTG-TCTTTAGCGGCGTTTTTTGAG
66 TTCT-CAAAAGCGCCGCTAATGAT-TTGTTCTTTAGCGGCGTTTTTTGAG
* * ** *
32724752 AAGCGCCGCAAAAAACCTAAGGGCAACAACGTCGTTT-TCTTTGTTTTTTGGGCCTTTAGCGGCG
1 AAGCGCCGCAAAAAA-ATAAGGCCAACAACGTCGTTTAT-TGAGTTTTTTGGGCCATTAGCGGCG
* * *
32724816 TTTTCTTAAAAGCGCTGCTAATGATTTGTTTTTTAGCGGCGTTTTTT
64 TTTTCTCAAAAGCGCCGCTAATGATTTGTTCTTTAGCGGCGTTTTTT
32724863 TGTAAGTGCC
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
112 16 0.16
113 24 0.25
114 56 0.58
115 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (113 bp):
AAGCGCCGCAAAAAAATAAGGCCAACAACGTCGTTTATTGAGTTTTTTGGGCCATTAGCGGCGTT
TTCTCAAAAGCGCCGCTAATGATTTGTTCTTTAGCGGCGTTTTTTGAG
Found at i:32725263 original size:18 final size:21
Alignment explanation
Indices: 32725217--32725265 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 21
32725207 TAGTTCGACT
32725217 AAATTAATATATAAATCAAAC
1 AAATTAATATATAAATCAAAC
* *
32725238 AAAGTAATATA-AAA-C-ACC
1 AAATTAATATATAAATCAAAC
32725256 AAATTAATAT
1 AAATTAATAT
32725266 CGTGATTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 11 0.44
19 1 0.04
20 3 0.12
21 10 0.40
ACGTcount: A:0.61, C:0.10, G:0.02, T:0.27
Consensus pattern (21 bp):
AAATTAATATATAAATCAAAC
Found at i:32725867 original size:7 final size:7
Alignment explanation
Indices: 32725855--32725881 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
32725845 GAGGTAAGGG
32725855 TTTGGGA
1 TTTGGGA
32725862 TTTGGGA
1 TTTGGGA
32725869 TTTGGGA
1 TTTGGGA
32725876 TTTGGG
1 TTTGGG
32725882 TTTTTGAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.00, G:0.44, T:0.44
Consensus pattern (7 bp):
TTTGGGA
Found at i:32726828 original size:231 final size:231
Alignment explanation
Indices: 32726331--32726812 Score: 786
Period size: 230 Copynumber: 2.1 Consensus size: 231
32726321 AAGTTGTGAA
*
32726331 GAAAACGGCGCCGTTTTCTTATTACATTTAGTGGCGTTTTATACAAAACGCCGCAACTATGTTTT
1 GAAAACGGCGCCGTTTTCTTATTACATTTAGTGGCGTTTTAGACAAAACGCCGCAACTATGTTTT
* * * ** *
32726396 CTTTGTTACGGGAACGGCGTCGTTTTCCATTGTTATTAGTGGCGTTACACCCAAAACGCCGCAAA
66 CTTTGTTACAGAAACGGCATCGTTTTCCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAA
*
32726461 TATATTTTAAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCATT
131 TATATTTTAAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACT
* *
32726526 TATATATAAACGTCGCAAACTCGAAATGGTGTTACG
196 TATATATAAACGCCGCAAAATCGAAATGGTGTTACG
* * * *
32726562 AAAAACGGCGCCATTTTCTTATTACATTTAGTGGCGTTTTAGATAAAACGCCGCAAGTATGTTTT
1 GAAAACGGCGCCGTTTTCTTATTACATTTAGTGGCGTTTTAGACAAAACGCCGCAACTATGTTTT
*
32726627 CTTTGTTACAGAAACGGCATCGTTTT-CAAGGATATTTGTGGCGTTACACCCAAAACGCCGCAAA
66 CTTTGTTACAGAAACGGCATCGTTTTCCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAA
* * *
32726691 TATATTTTAAAGATTACAGGAGTTTGCTTTAAACGACTGCGTTTGACCTTATATTTAGTGGCGCT
131 TATATTTTAAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACT
32726756 TATATATAAACGCCGCAAAATCGAAATGGTGTTACG
196 TATATATAAACGCCGCAAAATCGAAATGGTGTTACG
*
32726792 GAAAACGGCGCCGTTTACTTA
1 GAAAACGGCGCCGTTTTCTTA
32726813 GTTGGTTTTA
Statistics
Matches: 230, Mismatches: 21, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
230 147 0.64
231 83 0.36
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (231 bp):
GAAAACGGCGCCGTTTTCTTATTACATTTAGTGGCGTTTTAGACAAAACGCCGCAACTATGTTTT
CTTTGTTACAGAAACGGCATCGTTTTCCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAA
TATATTTTAAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACT
TATATATAAACGCCGCAAAATCGAAATGGTGTTACG
Found at i:32726882 original size:230 final size:229
Alignment explanation
Indices: 32726332--32726883 Score: 667
Period size: 230 Copynumber: 2.4 Consensus size: 229
32726322 AGTTGTGAAG
* * * * ** *
32726332 AAAACGGCGCCGTTTTCTTATTACATTTAGTGGCGTTTTATACAAAACGCCGCAACTATGTTTTC
1 AAAACGGCGCCATTTACTTATTACATTTAGTGGCGTTTTA-ATAAAACGCCGCAAATATGCATTA
*** * * * ** *
32726397 TTTGTTACGGGAACGGCGTCGTTTTCCATTGTTATTAGTGGCGTTACACCCAAAACGCCGCAAAT
65 TAACTTACAGAAACGGCATCGTTTT-CAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAAT
*
32726462 ATATTTTAAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCATTT
129 ATATTTTAAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTT
* *
32726527 ATATATAAACGTCGCAAACTCGAAATGGTGTTACGA
194 ATATATAAACGCCGCAAAATCGAAATGGTGTTACGA
* * ** *
32726563 AAAACGGCGCCATTTTCTTATTACATTTAGTGGCGTTTTAGATAAAACGCCGCAAGTATGTTTTC
1 AAAACGGCGCCATTTACTTATTACATTTAGTGGCGTTTTA-ATAAAACGCCGCAAATATGCATTA
*** *
32726628 TTTGTTACAGAAACGGCATCGTTTTCAAGGATATTTGTGGCGTTACACCCAAAACGCCGCAAATA
65 TAACTTACAGAAACGGCATCGTTTTCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATA
* * *
32726693 TATTTTAAAGATTACAGGAGTTTGCTTTAAACGACTGCGTTTGACCTTATATTTAGTGGCGCTTA
130 TATTTTAAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTA
*
32726758 TATATAAACGCCGCAAAATCGAAATGGTGTTACGG
195 TATATAAACGCCGCAAAATCGAAATGGTGTTACGA
* *** * * *
32726793 AAAACGGCGCCGTTTACTTAGTTGGTTTTAGTGGCGCTTTT-ATTAAACGCTGCAAATTTGCATT
1 AAAACGGCGCCATTTACTTA-TTACATTTAGTGGCG-TTTTAATAAAACGCCGCAAATATGCATT
* *
32726857 ATAACTTA-AGGAAACTGCGTCGTTTTC
64 ATAACTTACA-GAAACGGCATCGTTTTC
32726884 CATTGTTAGT
Statistics
Matches: 283, Mismatches: 35, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
229 1 0.00
230 183 0.65
231 95 0.34
232 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (229 bp):
AAAACGGCGCCATTTACTTATTACATTTAGTGGCGTTTTAATAAAACGCCGCAAATATGCATTAT
AACTTACAGAAACGGCATCGTTTTCAAGGATATTAGTGGCGTTACACCCAAAACGCCGCAAATAT
ATTTTAAAGATTACACGAGTTTGCGTTAAACGACTGCGTTTGACCTTATATTTAGTGGCACTTAT
ATATAAACGCCGCAAAATCGAAATGGTGTTACGA
Found at i:32727198 original size:19 final size:19
Alignment explanation
Indices: 32727176--32727219 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
32727166 CAGACATCTC
*
32727176 CCCCAAATCCCTAAAATTT
1 CCCCAAATCCCTAAAAGTT
* *
32727195 CCCCTAATCCCTAACAGTT
1 CCCCAAATCCCTAAAAGTT
32727214 CCCCAA
1 CCCCAA
32727220 CGTAGTCCAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.32, C:0.43, G:0.02, T:0.23
Consensus pattern (19 bp):
CCCCAAATCCCTAAAAGTT
Found at i:32729297 original size:39 final size:39
Alignment explanation
Indices: 32729240--32729352 Score: 124
Period size: 37 Copynumber: 2.9 Consensus size: 39
32729230 TACAATTTCT
32729240 TAACTTATATAATATTAAGATAACTTATATAATATTACA
1 TAACTTATATAATATTAAGATAACTTATATAATATTACA
* * * * *
32729279 TAACTTATATCATGTTAAGATAA--AAAATCGA-ATTACA
1 TAACTTATATAATATTAAGATAACTTATAT-AATATTACA
* * *
32729316 TAACTTATATAATATTAATATTACTTTTATAATATTA
1 TAACTTATATAATATTAAGATAACTTATATAATATTA
32729353 AGATCAAATT
Statistics
Matches: 57, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
37 28 0.49
38 2 0.04
39 27 0.47
ACGTcount: A:0.47, C:0.08, G:0.04, T:0.42
Consensus pattern (39 bp):
TAACTTATATAATATTAAGATAACTTATATAATATTACA
Found at i:32729373 original size:57 final size:57
Alignment explanation
Indices: 32729259--32730090 Score: 851
Period size: 57 Copynumber: 14.3 Consensus size: 57
32729249 TAATATTAAG
* * * * **
32729259 ATAACTTATATAATATTACATA--ACTTATATCATGTTAAGATAAAAAATCGAATTAC
1 ATAACTTATATAATATTA-ATATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
32729315 ATAACTTATATAATATTAATATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
1 ATAACTTATATAATATTAATATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
* * ** * ** * * ** *
32729372 ATAACTTATACAATAATAAGGTAAAATTTCTAATTACATAACTTACACAATATTAAGATAAAATT
1 ATAACTTATATAATATTAATATTACTTTTATAA-TA-TTAAGAT-CA-AAT-TT-CG----AATT
*
32729437 CCAA
56 --AC
* * * *
32729441 ATTACATAACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
1 ATAACTTAT-----ATAATATTAATATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
* * *
32729503 ATAACTTATATAATATTACATA--ACTTACGTACAATATTAAGATAAAATTTCGAATTAC
1 ATAACTTATATAATATTA-ATATTACTT--TTATAATATTAAGATCAAATTTCGAATTAC
* *
32729561 ATAAGTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
1 ATAACTTATATAATATTAATATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
* * *
32729618 ATAACTTATATAATATTACATA--ACTTACGTACAATATTAAGATAAAATTTCGAATTAC
1 ATAACTTATATAATATTA-ATATTACTT--TTATAATATTAAGATCAAATTTCGAATTAC
* *
32729676 ATAAGTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
1 ATAACTTATATAATATTAATATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
* * *
32729733 ATAACTTATATAATATTACATA--ACTTACGTACAATATTAAGATAAAATTTCGAATTAC
1 ATAACTTATATAATATTA-ATATTACTT--TTATAATATTAAGATCAAATTTCGAATTAC
* *
32729791 ATAAGTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
1 ATAACTTATATAATATTAATATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
* * *
32729848 ATAACTTATATAATATTACATA--ACTTACGTACAATATTAAGATAAAATTTCGAATTAC
1 ATAACTTATATAATATTA-ATATTACTT--TTATAATATTAAGATCAAATTTCGAATTAC
* *
32729906 ATAAGTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
1 ATAACTTATATAATATTAATATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
* * * * **
32729963 ATAACTTATATAATATTACATA--ACTTATATCATGTTAAGATAAAAAATCGAATTAC
1 ATAACTTATATAATATTA-ATATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
32730019 ATAACTTATATAATATTAATATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
1 ATAACTTATATAATATTAATATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
*
32730076 ATAACTTATACAATA
1 ATAACTTATATAATA
32730091 ATAAGGTAAA
Statistics
Matches: 643, Mismatches: 91, Indels: 83
0.79 0.11 0.10
Matches are distributed among these distances:
55 6 0.01
56 80 0.12
57 288 0.45
58 188 0.29
59 20 0.03
60 2 0.00
61 3 0.00
62 9 0.01
63 1 0.00
64 4 0.01
67 4 0.01
68 1 0.00
69 9 0.01
70 3 0.00
71 2 0.00
72 4 0.01
73 2 0.00
74 17 0.03
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (57 bp):
ATAACTTATATAATATTAATATTACTTTTATAATATTAAGATCAAATTTCGAATTAC
Found at i:32729400 original size:37 final size:37
Alignment explanation
Indices: 32729346--32729467 Score: 172
Period size: 37 Copynumber: 3.3 Consensus size: 37
32729336 TTACTTTTAT
* *
32729346 AATATTAAGATCAAATTTCGAATTACATAACTTATAC
1 AATATTAAGATAAAATTTCAAATTACATAACTTATAC
* * * *
32729383 AATAATAAGGTAAAATTTCTAATTACATAACTTACAC
1 AATATTAAGATAAAATTTCAAATTACATAACTTATAC
* *
32729420 AATATTAAGATAAAATTCCAAATTACATAACTTATAT
1 AATATTAAGATAAAATTTCAAATTACATAACTTATAC
32729457 AATATTAAGAT
1 AATATTAAGAT
32729468 TACTTTTATA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.34
Consensus pattern (37 bp):
AATATTAAGATAAAATTTCAAATTACATAACTTATAC
Found at i:32729546 original size:115 final size:115
Alignment explanation
Indices: 32729404--32730090 Score: 1249
Period size: 115 Copynumber: 6.0 Consensus size: 115
32729394 AAAATTTCTA
* * *
32729404 ATTACATAACTTAC--ACAATATTAAGATAAAATTCCAAATTACATAACTTATATAATATTAAGA
1 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
32729467 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
66 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
32729517 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
1 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
32729582 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
66 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
32729632 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
1 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
32729697 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
66 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
32729747 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
1 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
32729812 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
66 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
32729862 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
1 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
32729927 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
66 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
* ** * *
32729977 ATTACATAACTTA--TATC-ATGTTAAGATAAAAAATCGAATTACATAACTTATATAATATTAAT
1 ATTACATAACTTACGTA-CAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAG
*
32730039 ATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATACAAT
65 ATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
32730090 A
1 A
32730091 ATAAGGTAAA
Statistics
Matches: 562, Mismatches: 9, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
113 107 0.19
114 1 0.00
115 454 0.81
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (115 bp):
ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
Found at i:32729676 original size:230 final size:229
Alignment explanation
Indices: 32729404--32730842 Score: 1774
Period size: 230 Copynumber: 6.3 Consensus size: 229
32729394 AAAATTTCTA
* * *
32729404 ATTACATAACTTAC-ACAATATTAAGATAAAATTCCAAATTACATAACTTATATAATATTAAGAT
1 ATTACATAACTTACTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGAT
32729468 TACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTACGT
66 TACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTACGT
32729533 ACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAATATT
131 ACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAATATT
32729598 AAGATCAAATTTCGAATTACATAACTTATATAAT
196 AAGATCAAATTTCGAATTACATAACTTATATAAT
32729632 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
1 ATTACATAACTTAC-TACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
32729697 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTACG
65 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTACG
32729762 TACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAATAT
130 TACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAATAT
32729827 TAAGATCAAATTTCGAATTACATAACTTATATAAT
195 TAAGATCAAATTTCGAATTACATAACTTATATAAT
32729862 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
1 ATTACATAACTTAC-TACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
32729927 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTA--
65 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTACG
* ** * *
32729990 TATC-ATGTTAAGATAAAAAATCGAATTACATAACTTATATAATATTAATATTACTTTTATAATA
130 TA-CAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAATA
32730054 TTAAGATCAAATTTCGAATTACATAACTTATACAATAATAAGGTAAAATTTCT
194 TTAAGATCAAATTTCGAATTACATAAC---T----T-AT-A--T--AA----T
32730107 AATTACATAACTTAC-ACAATATTAAGATATAAAATTTCGAATTACATAAGTTATATAATATTAA
1 -ATTACATAACTTACTACAATATTAAG--ATAAAATTTCGAATTACATAAGTTATATAATATTAA
32730171 GATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTA
63 GATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTA
32730236 CGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAAT
128 CGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAAT
32730301 ATTAAGATCAAATTTCGAATTACATAACTTATATAAT
193 ATTAAGATCAAATTTCGAATTACATAACTTATATAAT
32730338 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
1 ATTACATAACTTAC-TACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
** * * * *
32730403 TTACTTTTATAATATTAAGATCAAATTTTTAATTACGTAACTTATATAATTTTCCATAAC-T-CA
65 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTACG
* * ** * * * * * *
32730466 TACAATATTAAGAT-TACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTT-T
130 TACAATATTAAGATAAAATT-T-CGA-ATT-ACATAAGTTATATAATATTAAGAT-TACTTTTAT
* * ** * *
32730529 -A-ATTACG-T-AACTTATATAATTTTCCGTAACTTATATAAT
190 AATATTAAGATCAAATT-TCGAA--TTACATAACTTATATAAT
* * * * * * *
32730568 ATTAAGATTACTTA-TATAATATTAAGATAAAATTTCTAATTACATAACTTACATAA-ATT-ACA
1 ATT-ACATAACTTACTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
* * * * * * * * *
32730630 TAACTTATACAATATTAAGGT-AAGATTTCAAATTACATAACTCATACAATATTAAGATTACTTA
65 TTACTTTTATAATATTAAGATCAA-ATTTCGAATTACATAACTTATATAATATT-ACATAACTTA
* * * * *
32730694 --TATAATATTAAGATAAAATTTCTAATTACATAA---AT-T-ACA-T---A--ACTTATACAAT
128 CGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAAT
* * *
32730746 ATTAAGGT-AAGATTTCGAATTACATAACTCATACAAT
193 ATTAAGATCAA-ATTTCGAATTACATAACTTATATAAT
* * * * * *
32730783 ATTAAGATTACTTA-TATAATATTAAGATAAAATTTCTAATTACATAACTTACATAA-ATTA
1 ATT-ACATAACTTACTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTA
32730843 CATAAATTAC
Statistics
Matches: 1088, Mismatches: 75, Indels: 108
0.86 0.06 0.08
Matches are distributed among these distances:
213 4 0.00
215 74 0.07
216 6 0.01
217 6 0.01
218 2 0.00
219 1 0.00
220 2 0.00
221 1 0.00
222 1 0.00
225 4 0.00
226 5 0.00
227 50 0.05
228 139 0.13
229 50 0.05
230 469 0.43
231 31 0.03
232 16 0.01
235 3 0.00
236 2 0.00
237 2 0.00
239 2 0.00
240 2 0.00
241 3 0.00
244 11 0.01
245 2 0.00
246 115 0.11
247 1 0.00
248 84 0.08
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.39
Consensus pattern (229 bp):
ATTACATAACTTACTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGAT
TACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTACGT
ACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAATATT
AAGATCAAATTTCGAATTACATAACTTATATAAT
Found at i:32730149 original size:361 final size:361
Alignment explanation
Indices: 32729747--32730833 Score: 1281
Period size: 361 Copynumber: 2.9 Consensus size: 361
32729737 CTTATATAAT
32729747 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
1 ATTACATAACTTACG-ACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
32729812 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTACG
65 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTACG
32729877 TACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAATAT
130 TACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAATAT
*
32729942 TAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTA-TATC-ATGTTAAGATA
195 TAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTACTA-CAATATTAAGATA
*
32730005 AAAAATCGAATTACATAACTTATATAATATTAATATTACTTTTATAATATTAAGATCAAATTTCG
259 AAAAATCGAATTACATAACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTCG
32730070 AATTACATAACTTATACAATAATAAGGTAAAATTTCTA
324 AATTACATAACTTATACAATAATAAGGTAAAATTTCTA
32730108 ATTACATAACTTAC-ACAATATTAAGATATAAAATTTCGAATTACATAAGTTATATAATATTAAG
1 ATTACATAACTTACGACAATATTAAG--ATAAAATTTCGAATTACATAAGTTATATAATATTAAG
32730172 ATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTAC
64 ATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTAC
32730237 GTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAATA
129 GTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAATA
32730302 TTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTACGTACAATATTAAGAT
194 TTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTAC-TACAATATTAAGAT
** * *
32730367 AAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTT
258 AAAAAATCGAATTACATAACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTC
* * * ** *
32730432 TAATTACGTAACTTATATAATTTTCCATAACTCATACAATATTAAGATTACTTA
323 GAATTACATAAC-T-TAT-A----CAATAA-T-A-A-GGTA--AA-ATTTC-TA
* * * * * * *
32730486 TATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTTTAATTACGTAACTTATATAATTT
1 -ATTACA-TAA-CTTAC---GACAATATTAAGAT-AAA-----ATTT-CG-AA-TTACATAA---
* * *
32730551 TCCGTAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAATTACATAAC
48 ---G----TTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAAC
* * * * * * *
32730616 TTACATAA-ATTACATAACTTA--TACAATATTAAGGTAAGATTTCAAATTACATAACTCATACA
106 TTATATAATATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATA
* * *
32730678 ATATTAAGATTACTTATATAATATTAAGAT--AA-----AATTTC-TAA-TTACATAA-ATTACA
171 ATATTAAGATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACA
* * ** * * *
32730733 TAACTTA-TACAATATTAAGGTAAGATTTCGAATTACATAACTCATACAATATTAAGATTACTTA
236 TAACTTACTACAATATTAAGATAAAAAATCGAATTACATAACTTATATAATATTAAGATTACTTT
* *
32730797 TATAATATTAAGATAAAATTTCTAATTACATAACTTA
301 TATAATATTAAGATCAAATTTCGAATTACATAACTTA
32730834 CATAAATTAC
Statistics
Matches: 640, Mismatches: 40, Indels: 68
0.86 0.05 0.09
Matches are distributed among these distances:
359 11 0.02
361 230 0.36
362 1 0.00
363 81 0.13
364 1 0.00
365 3 0.00
366 1 0.00
370 5 0.01
371 1 0.00
372 1 0.00
373 1 0.00
374 2 0.00
376 2 0.00
377 4 0.01
378 2 0.00
379 4 0.01
380 3 0.00
381 4 0.01
383 2 0.00
384 3 0.00
385 12 0.02
386 1 0.00
387 82 0.13
389 16 0.03
390 9 0.01
391 5 0.01
392 12 0.02
397 2 0.00
398 1 0.00
399 64 0.10
401 13 0.02
402 61 0.10
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.39
Consensus pattern (361 bp):
ATTACATAACTTACGACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGAT
TACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTACGT
ACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTATAATATT
AAGATCAAATTTCGAATTACATAACTTATATAATATTACATAACTTACTACAATATTAAGATAAA
AAATCGAATTACATAACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTCGAA
TTACATAACTTATACAATAATAAGGTAAAATTTCTA
Found at i:32730151 original size:39 final size:37
Alignment explanation
Indices: 32730050--32730173 Score: 167
Period size: 37 Copynumber: 3.3 Consensus size: 37
32730040 TTACTTTTAT
*
32730050 AATATTAAGATCAAATTTCGAATTACATAACTTATAC
1 AATATTAAGATAAAATTTCGAATTACATAACTTATAC
* * * *
32730087 AATAATAAGGTAAAATTTCTAATTACATAACTTACAC
1 AATATTAAGATAAAATTTCGAATTACATAACTTATAC
* *
32730124 AATATTAAGATATAAAATTTCGAATTACATAAGTTATAT
1 AATATTAAG--ATAAAATTTCGAATTACATAACTTATAC
32730163 AATATTAAGAT
1 AATATTAAGAT
32730174 TACTTTTATA
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
37 42 0.57
39 32 0.43
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (37 bp):
AATATTAAGATAAAATTTCGAATTACATAACTTATAC
Found at i:32730152 original size:133 final size:131
Alignment explanation
Indices: 32729977--32730448 Score: 488
Period size: 115 Copynumber: 3.8 Consensus size: 131
32729967 CTTATATAAT
* * *
32729977 ATTACATAACTTATATCATGTTAAGATAAAAAATCGAATTACATAACTTATATAATATTAATATT
1 ATTACATAACTTACATCATATTAAGATAAAAAATCGAATTACATAACTTATATAATATTAAGATT
32730042 ACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATACAATAATAAGGTAAAATTTCT
66 ACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATACAATAATAAGGTAAAATTTCT
32730107 A
131 A
* *
32730108 ATTACATAACTTACA-CAATATTAAGATATAAAATTTCGAATTACATAAGTTATATAATATTAAG
1 ATTACATAACTTACATC-ATATTAAGATA-AAAA-ATCGAATTACATAACTTATATAATATTAAG
32730172 ATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAAC-T-T---AT-ATAA--T---ATT
63 ATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATACAATAATAAGGTAAAATT
*
32730226 AC--
128 TCTA
* * * ** *
32730228 ATAAC-TTACGTACA--ATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATT
1 ATTACATAACTTACATCATATTAAGATAAAAAATCGAATTACATAACTTATATAATATTAAGATT
*
32730290 ACTTTTATAATATTAAGATCAAATTTCGAATTACATAAC-T-T---AT-ATAA--T---ATTAC-
66 ACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATACAATAATAAGGTAAAATTTCT
32730343 -
131 A
* * * ** *
32730343 ATAAC-TTACGTACA--ATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATT
1 ATTACATAACTTACATCATATTAAGATAAAAAATCGAATTACATAACTTATATAATATTAAGATT
** *
32730405 ACTTTTATAATATTAAGATCAAATTTTTAATTACGTAACTTATA
66 ACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATA
32730449 TAATTTTCCA
Statistics
Matches: 322, Mismatches: 13, Indels: 25
0.89 0.04 0.07
Matches are distributed among these distances:
115 184 0.57
116 4 0.01
117 12 0.04
119 7 0.02
120 4 0.01
122 4 0.01
125 1 0.00
127 4 0.01
128 2 0.01
130 1 0.00
131 25 0.08
132 5 0.02
133 69 0.21
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.39
Consensus pattern (131 bp):
ATTACATAACTTACATCATATTAAGATAAAAAATCGAATTACATAACTTATATAATATTAAGATT
ACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATACAATAATAAGGTAAAATTTCT
A
Found at i:32730205 original size:57 final size:57
Alignment explanation
Indices: 32730124--32730842 Score: 620
Period size: 57 Copynumber: 12.8 Consensus size: 57
32730114 TAACTTACAC
* *
32730124 AATATTAAGATATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTAT
1 AATATTAAG--ATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTATAT
* * * *
32730183 AATATTAAGATCAAATTTCGAATTACATAACTTATATAATATT-ACATAACTTACGTAC
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTA--TAT
* *
32730241 AATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTAT
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTATAT
* * * *
32730298 AATATTAAGATCAAATTTCGAATTACATAACTTATATAATATT-ACATAACTTACGTAC
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTA--TAT
* *
32730356 AATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGATTACTTTTAT
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTATAT
* ** * *** * * *
32730413 AATATTAAGATCAAATTTTTAATTACGTAACTTATATAAT-TTTCCATAACTCATAC
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTATAT
* * ** * * * * *
32730469 AATATTAAGAT-TACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATT-T-T
1 AATATTAAGATAAAATT-T-CGA-ATT-ACATAACTTATATAATATTAAGAT-TACTTATAT
* * * ** * *
32730528 TA-ATTACG-T-AACTTATATAATTTTCCGTAACTTATATAATATTAAGATTACTTATAT
1 AATATTAAGATAAAATT-TCGAA--TTACATAACTTATATAATATTAAGATTACTTATAT
* * * * *
32730585 AATATTAAGATAAAATTTCTAATTACATAACTTACATAA-ATT-ACATAACTTATAC
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTATAT
* * * * *
32730640 AATATTAAGGTAAGATTTCAAATTACATAACTCATACAATATTAAGATTACTTATAT
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTATAT
* * *
32730697 AATATTAAGATAAAATTTCTAATTACATAA---AT-T-ACA-T---A--ACTTATAC
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTATAT
* * * *
32730743 AATATTAAGGTAAGATTTCGAATTACATAACTCATACAATATTAAGATTACTTATAT
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTATAT
* *
32730800 AATATTAAGATAAAATTTCTAATTACATAACTTACATAA-ATTA
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTA
32730843 CATAAATTAC
Statistics
Matches: 530, Mismatches: 98, Indels: 67
0.76 0.14 0.10
Matches are distributed among these distances:
46 34 0.06
48 1 0.00
49 2 0.00
51 3 0.01
52 3 0.01
54 2 0.00
55 51 0.10
56 66 0.12
57 216 0.41
58 99 0.19
59 41 0.08
60 9 0.02
61 3 0.01
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (57 bp):
AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTATAT
Found at i:32730254 original size:115 final size:115
Alignment explanation
Indices: 32730108--32730479 Score: 644
Period size: 115 Copynumber: 3.3 Consensus size: 115
32730098 AAAATTTCTA
32730108 ATTACATAACTTAC--ACAATATTAAGATATAAAATTTCGAATTACATAAGTTATATAATATTAA
1 ATTACATAACTTACGTACAATATTAAG--ATAAAATTTCGAATTACATAAGTTATATAATATTAA
32730171 GATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
64 GATTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
32730223 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
1 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
32730288 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
66 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
32730338 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
1 ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
** *
32730403 TTACTTTTATAATATTAAGATCAAATTTTTAATTACGTAACTTATATAAT
66 TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
* * *
32730453 TTTCCATAAC-T-CATACAATATTAAGAT
1 ATTACATAACTTACGTACAATATTAAGAT
32730480 TACTTATATA
Statistics
Matches: 249, Mismatches: 6, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
113 15 0.06
114 1 0.00
115 222 0.89
117 11 0.04
ACGTcount: A:0.45, C:0.10, G:0.06, T:0.40
Consensus pattern (115 bp):
ATTACATAACTTACGTACAATATTAAGATAAAATTTCGAATTACATAAGTTATATAATATTAAGA
TTACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAAT
Found at i:32730488 original size:96 final size:96
Alignment explanation
Indices: 32730387--32730595 Score: 391
Period size: 96 Copynumber: 2.2 Consensus size: 96
32730377 ATTACATAAG
32730387 TTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTTTAATTACGTAACTTATATAA
1 TTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTTTAATTACGTAACTTATATAA
32730452 TTTTCCATAACTCATACAATATTAAGATTAC
66 TTTTCCATAACTCATACAATATTAAGATTAC
32730483 TTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTTTAATTACGTAACTTATATAA
1 TTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTTTAATTACGTAACTTATATAA
* * *
32730548 TTTTCCGTAACTTATATAATATTAAGATTAC
66 TTTTCCATAACTCATACAATATTAAGATTAC
32730579 TTATATAATATTAAGAT
1 TTATATAATATTAAGAT
32730596 AAAATTTCTA
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 110 1.00
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.45
Consensus pattern (96 bp):
TTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTTTAATTACGTAACTTATATAA
TTTTCCATAACTCATACAATATTAAGATTAC
Found at i:32730561 original size:76 final size:75
Alignment explanation
Indices: 32730318--32730648 Score: 253
Period size: 76 Copynumber: 4.3 Consensus size: 75
32730308 TCAAATTTCG
* * * *
32730318 AATTACATAACTTATATAATATT-ACATAACTTACGTACAATATTAAGATAAAATTTCGAATTAC
1 AATTACATAACTTATATAATATTAAGATTACTTA--TATAATATTAAGATAAAATTTCTAATTAC
* *
32730382 ATAAGTTATATA
64 ATAACTTACATA
* * * * * * * * *
32730394 ATATTAAGATTACTTTTATAATATTAAGATCAAATT-T-TTA-ATTACG-T-AACTTATATAATT
1 A-ATT-ACATAACTTATATAATATTAAGAT-TACTTATATAATATTAAGATAAAATT-TCTAA--
*
32730454 TTCCATAACTCATACA-A
60 TTACATAACT--TACATA
* * * * * * *
32730471 TATTAAGATTACTTATATAATATTAAGATTACTTTTATAATATTAAGATCAAATTTTTAATTACG
1 AATT-ACATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAATTACA
*
32730536 TAACTTATATA
65 TAACTTACATA
* * *
32730547 ATTTTCCGTAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAATTACA
1 A-ATTACATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAATTACA
32730612 TAACTTACATA
65 TAACTTACATA
*
32730623 AATTACATAACTTATACAATATTAAG
1 AATTACATAACTTATATAATATTAAG
32730649 GTAAGATTTC
Statistics
Matches: 199, Mismatches: 40, Indels: 33
0.73 0.15 0.12
Matches are distributed among these distances:
73 4 0.02
74 4 0.02
75 32 0.16
76 102 0.51
77 17 0.09
78 24 0.12
79 8 0.04
80 8 0.04
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (75 bp):
AATTACATAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAATTACAT
AACTTACATA
Found at i:32730621 original size:9 final size:9
Alignment explanation
Indices: 32730607--32730636 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
32730597 AAATTTCTAA
32730607 TTACATAAC
1 TTACATAAC
*
32730616 TTACATAAA
1 TTACATAAC
32730625 TTACATAAC
1 TTACATAAC
32730634 TTA
1 TTA
32730637 TACAATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.37
Consensus pattern (9 bp):
TTACATAAC
Found at i:32730669 original size:46 final size:46
Alignment explanation
Indices: 32730616--32730772 Score: 161
Period size: 46 Copynumber: 3.2 Consensus size: 46
32730606 ATTACATAAC
32730616 TTACATAAATTACATAACTTATACAATATTAAGGTAAGATTTCAAA
1 TTACATAAATTACATAACTTATACAATATTAAGGTAAGATTTCAAA
* * * * *
32730662 TTACATAACTCATACAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAA
1 TTACATAAAT--TAC---A-T---A--ACTTATACAATATTAAGGTAAGATTTCAAA
*
32730719 TTACATAAATTACATAACTTATACAATATTAAGGTAAGATTTCGAA
1 TTACATAAATTACATAACTTATACAATATTAAGGTAAGATTTCAAA
32730765 TTACATAA
1 TTACATAA
32730773 CTCATACAAT
Statistics
Matches: 90, Mismatches: 10, Indels: 22
0.74 0.08 0.18
Matches are distributed among these distances:
46 43 0.48
48 4 0.04
51 2 0.02
52 2 0.02
55 4 0.04
57 35 0.39
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.36
Consensus pattern (46 bp):
TTACATAAATTACATAACTTATACAATATTAAGGTAAGATTTCAAA
Found at i:32730705 original size:112 final size:112
Alignment explanation
Indices: 32730555--32730847 Score: 496
Period size: 103 Copynumber: 2.7 Consensus size: 112
32730545 TAATTTTCCG
* *
32730555 TAACTTATATAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTAC
1 TAACTCATACAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTAC
32730620 ATAAATTACATAACTTATACAATATTAAGGTAAGATTTCAAATTACA
66 ATAAATTACATAACTTATACAATATTAAGGTAAGATTTCAAATTACA
32730667 TAACTCATACAATATTAAGATTACTTATATAATATTAAGATAAAA----T--TT-C-TAA-TTAC
1 TAACTCATACAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTAC
*
32730723 ATAAATTACATAACTTATACAATATTAAGGTAAGATTTCGAATTACA
66 ATAAATTACATAACTTATACAATATTAAGGTAAGATTTCAAATTACA
32730770 TAACTCATACAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTAC
1 TAACTCATACAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTAC
32730835 ATAAATTACATAA
66 ATAAATTACATAA
32730848 ATTACATAAC
Statistics
Matches: 169, Mismatches: 3, Indels: 18
0.89 0.02 0.09
Matches are distributed among these distances:
103 95 0.56
104 3 0.02
105 1 0.01
106 2 0.01
107 1 0.01
108 1 0.01
109 2 0.01
110 1 0.01
111 3 0.02
112 60 0.36
ACGTcount: A:0.47, C:0.11, G:0.04, T:0.38
Consensus pattern (112 bp):
TAACTCATACAATATTAAGATTACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTAC
ATAAATTACATAACTTATACAATATTAAGGTAAGATTTCAAATTACA
Found at i:32730836 original size:9 final size:9
Alignment explanation
Indices: 32730822--32731067 Score: 206
Period size: 9 Copynumber: 28.1 Consensus size: 9
32730812 AAATTTCTAA
32730822 TTACATAAC
1 TTACATAAC
*
32730831 TTACATAAA
1 TTACATAAC
*
32730840 TTACATAAA
1 TTACATAAC
32730849 TTACATAAC
1 TTACATAAC
*
32730858 TTACATAAA
1 TTACATAAC
*
32730867 TTAAATAAC
1 TTACATAAC
*
32730876 TTGCATAAC
1 TTACATAAC
*
32730885 TTAAATAAC
1 TTACATAAC
32730894 TTACATAAC
1 TTACATAAC
*
32730903 --AGATAACC
1 TTACATAA-C
* *
32730911 TT-CCTAGC
1 TTACATAAC
* *
32730919 TTACATTAT
1 TTACATAAC
*
32730928 TTAGATAA-
1 TTACATAAC
*
32730936 -TACATAGC
1 TTACATAAC
*
32730944 CTACATAAC
1 TTACATAAC
32730953 TTACATAAC
1 TTACATAAC
*
32730962 TTACATAAA
1 TTACATAAC
*
32730971 TTAAATAAC
1 TTACATAAC
32730980 TTACATAAC
1 TTACATAAC
32730989 TTACATAAC
1 TTACATAAC
*
32730998 TCACATAA-
1 TTACATAAC
*
32731006 -TACACAAC
1 TTACATAAC
32731014 TTACATAAC
1 TTACATAAC
32731023 TTACATAA-
1 TTACATAAC
32731031 -TACATAAC
1 TTACATAAC
* *
32731039 ATT-CCTATC
1 -TTACATAAC
*
32731048 ATATCATAAC
1 TTA-CATAAC
32731058 TTACATAAC
1 TTACATAAC
32731067 T
1 T
32731068 CATTTATAGT
Statistics
Matches: 186, Mismatches: 38, Indels: 26
0.74 0.15 0.10
Matches are distributed among these distances:
7 22 0.12
8 5 0.03
9 152 0.82
10 7 0.04
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.33
Consensus pattern (9 bp):
TTACATAAC
Found at i:32731026 original size:104 final size:104
Alignment explanation
Indices: 32730841--32731028 Score: 279
Period size: 104 Copynumber: 1.8 Consensus size: 104
32730831 TTACATAAAT
* * *
32730841 TACATAAATTACATAACTTACATAAATTAAATAACTTGCATAACTTAAATAACTTACATAACAGA
1 TACATAAATTACATAACTTACATAAATTAAATAACTTACATAACTTAAATAACTCACATAACACA
* * *
32730906 TAACCTTCCTAGCTTACATTATTTAGATAATACATAGCC
66 CAACCTTCATAACTTACATTATTTAGATAATACATAGCC
* * *
32730945 TACATAACTTACATAACTTACATAAATTAAATAACTTACATAACTTACATAACTCACATAATACA
1 TACATAAATTACATAACTTACATAAATTAAATAACTTACATAACTTAAATAACTCACATAACACA
32731010 CAA-CTTACATAACTTACAT
66 CAACCTT-CATAACTTACAT
32731029 AATACATAAC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
103 3 0.04
104 71 0.96
ACGTcount: A:0.46, C:0.20, G:0.03, T:0.32
Consensus pattern (104 bp):
TACATAAATTACATAACTTACATAAATTAAATAACTTACATAACTTAAATAACTCACATAACACA
CAACCTTCATAACTTACATTATTTAGATAATACATAGCC
Found at i:32736562 original size:21 final size:21
Alignment explanation
Indices: 32736536--32736606 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 21
32736526 CTACAACTTA
*
32736536 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGGG
* * *
32736557 AAGCAGCGGCTGTAGCGAAGG
1 AAGCAGAGGCTGCAGCGAGGG
*
32736578 AAGCAGAGGCTGCAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGGG
*
32736599 AAGTAGAG
1 AAGCAGAG
32736607 CAGAGCAAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.32, C:0.17, G:0.45, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGGG
Found at i:32738126 original size:14 final size:15
Alignment explanation
Indices: 32738107--32738141 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
32738097 TTTAATTTTC
*
32738107 AAAATTTCAAAAA-A
1 AAAATTTAAAAAATA
32738121 AAAATTTAAAAAATA
1 AAAATTTAAAAAATA
32738136 AAAATT
1 AAAATT
32738142 ACTTTTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATTTAAAAAATA
Found at i:32738171 original size:30 final size:30
Alignment explanation
Indices: 32738145--32738238 Score: 120
Period size: 30 Copynumber: 3.1 Consensus size: 30
32738135 AAAAATTACT
32738145 TTTTGACCCCTAAACTTT-TCCTAAATTTCA
1 TTTTGACCCCTAAACTTTCT-CTAAATTTCA
* *
32738175 TTTTGACCCTTAAACTTTCTTTAAATTTCA
1 TTTTGACCCCTAAACTTTCTCTAAATTTCA
* *
32738205 TTTAGACCCCTAAACATTCAT-TAAATTTCA
1 TTTTGACCCCTAAACTTTC-TCTAAATTTCA
32738235 TTTT
1 TTTT
32738239 AATCCTAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
30 54 0.96
31 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.03, T:0.46
Consensus pattern (30 bp):
TTTTGACCCCTAAACTTTCTCTAAATTTCA
Found at i:32738213 original size:60 final size:59
Alignment explanation
Indices: 32738134--32738272 Score: 156
Period size: 60 Copynumber: 2.4 Consensus size: 59
32738124 ATTTAAAAAA
* * * *
32738134 TAAAAATTACTTTTTGACCCCTAAACTTTTC-CTAAATTTCATTTTGACCCTTAAACTTTC
1 TAAAAATTACATTTAGACCCCTAAAC-ATTCACTAAATTTCATTTTAACCC-TAAACTTTC
** * * * *
32738194 TTTAAATTTCATTTAGACCCCTAAACATTCATTAAATTTCATTTTAATCCTAAATTTTC
1 TAAAAATTACATTTAGACCCCTAAACATTCACTAAATTTCATTTTAACCCTAAACTTTC
32738253 TAAAAATTACATTTAG-CCCC
1 TAAAAATTACATTTAGACCCC
32738273 AGAAGTTTTG
Statistics
Matches: 65, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
58 4 0.06
59 24 0.37
60 37 0.57
ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42
Consensus pattern (59 bp):
TAAAAATTACATTTAGACCCCTAAACATTCACTAAATTTCATTTTAACCCTAAACTTTC
Found at i:32739601 original size:17 final size:17
Alignment explanation
Indices: 32739504--32739601 Score: 90
Period size: 17 Copynumber: 5.6 Consensus size: 17
32739494 AAAAAAATAA
* *
32739504 TTTCGTATTTCAAAAAT
1 TTTCGTGTTTTAAAAAT
**
32739521 TTTCGTGTTTCCAAAAT
1 TTTCGTGTTTTAAAAAT
32739538 TTTGCGTGTTTTAAAAAT
1 TTT-CGTGTTTTAAAAAT
**
32739556 CCTCGTGTTTTCAAAAA-
1 TTTCGTGTTTT-AAAAAT
*
32739573 TTTCAGTGTTTTGAAAAT
1 TTTC-GTGTTTTAAAAAT
*
32739591 TTTTGTGTTTT
1 TTTCGTGTTTT
32739602 TTTAAAAAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
17 39 0.58
18 28 0.42
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (17 bp):
TTTCGTGTTTTAAAAAT
Found at i:32739601 original size:35 final size:35
Alignment explanation
Indices: 32739502--32739601 Score: 105
Period size: 35 Copynumber: 2.9 Consensus size: 35
32739492 AAAAAAAAAT
* * *
32739502 AATTT-CGTATTTCAAAAATTTTCGTGTTTCCAAA
1 AATTTGCGTGTTTTAAAAATTTTCGTGTTTTCAAA
* **
32739536 ATTTTGCGTGTTTTAAAAATCCTCGTGTTTTCAAA
1 AATTTGCGTGTTTTAAAAATTTTCGTGTTTTCAAA
* *
32739571 AATTT-CAGTGTTTTGAAAATTTTTGTGTTTT
1 AATTTGC-GTGTTTTAAAAATTTTCGTGTTTT
32739602 TTTAAAAAAA
Statistics
Matches: 53, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
34 5 0.09
35 48 0.91
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (35 bp):
AATTTGCGTGTTTTAAAAATTTTCGTGTTTTCAAA
Found at i:32739665 original size:40 final size:37
Alignment explanation
Indices: 32739579--32739668 Score: 99
Period size: 39 Copynumber: 2.3 Consensus size: 37
32739569 AAAATTTCAG
* * * *
32739579 TGTTTTGAAAATTTTTGTGTTTTTTTAAAAAAAAATCT
1 TGTTTTCAAAATTTTCGT-TTTTTTAAAAAAAAAATAT
32739617 TGTGTTTCATAAATTTTCGTTTTTTTAAAAAAAATAATAAT
1 TGT-TTTCA-AAATTTTCGTTTTTTTAAAAAAAA-AAT-AT
32739658 TGTTTTCAAAA
1 TGTTTTCAAAA
32739669 ATCTTCGTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
38 3 0.07
39 20 0.45
40 17 0.39
41 4 0.09
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (37 bp):
TGTTTTCAAAATTTTCGTTTTTTTAAAAAAAAAATAT
Found at i:32739676 original size:40 final size:38
Alignment explanation
Indices: 32739597--32739681 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 38
32739587 AAATTTTTGT
* * *
32739597 GTTTTTTTAAAAAAAAATCTTGTGTTTCATAAATTTTC
1 GTTTTTTTAAAAAAAAATATTGTGTTTCAAAAATCTTC
32739635 GTTTTTTTAAAAAAAATAATAATTGT-TTTCAAAAATCTTC
1 GTTTTTTT-AAAAAAA-AAT-ATTGTGTTTCAAAAATCTTC
*
32739675 GTGTTTT
1 GTTTTTT
32739682 CAAGATTTCG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
38 8 0.20
39 7 0.17
40 21 0.52
41 4 0.10
ACGTcount: A:0.35, C:0.07, G:0.08, T:0.49
Consensus pattern (38 bp):
GTTTTTTTAAAAAAAAATATTGTGTTTCAAAAATCTTC
Found at i:32739741 original size:21 final size:21
Alignment explanation
Indices: 32739717--32739756 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
32739707 TCATGTTTTT
32739717 AAAAAATTTTCTCGTGTTCAA
1 AAAAAATTTTCTCGTGTTCAA
*
32739738 AAAAAATTTTTTCGTGTTC
1 AAAAAATTTTCTCGTGTTC
32739757 TTTTTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (21 bp):
AAAAAATTTTCTCGTGTTCAA
Found at i:32739858 original size:17 final size:17
Alignment explanation
Indices: 32739833--32740037 Score: 137
Period size: 17 Copynumber: 11.8 Consensus size: 17
32739823 AAAAAATTGT
*
32739833 TTTCAAAAAATTTTCATG
1 TTTC-AAAAATTTTCGTG
32739851 TTTCAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
32739868 TTTTCAAAAATTTTCGTG
1 -TTTCAAAAATTTTCGTG
* * *
32739886 TTTTCAACAATTCTCATG
1 -TTTCAAAAATTTTCGTG
** *
32739904 TTTCACGAATTTTCGCG
1 TTTCAAAAATTTTCGTG
* **
32739921 CTTCAAAAA-AATCAG-G
1 TTTCAAAAATTTTC-GTG
** *
32739937 TTTTCAAAAAAATTCGCGTA
1 -TTTC--AAAAATTTTCGTG
*
32739957 TTTC-AAAATTGTCGTG
1 TTTCAAAAATTTTCGTG
32739973 TTCTCAAAAATTTTCGTG
1 TT-TCAAAAATTTTCGTG
* *
32739991 TTTTAAGAATTTTCGTG
1 TTTCAAAAATTTTCGTG
* * *
32740008 TCTCTAAAATTCTCGTG
1 TTTCAAAAATTTTCGTG
*
32740025 TTTTAAAAATTTT
1 TTTCAAAAATTTT
32740038 TCTTGTCTAA
Statistics
Matches: 144, Mismatches: 34, Indels: 19
0.73 0.17 0.10
Matches are distributed among these distances:
16 14 0.10
17 70 0.49
18 49 0.34
19 10 0.07
20 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43
Consensus pattern (17 bp):
TTTCAAAAATTTTCGTG
Found at i:32740051 original size:34 final size:34
Alignment explanation
Indices: 32739944--32740051 Score: 112
Period size: 34 Copynumber: 3.2 Consensus size: 34
32739934 AGGTTTTCAA
* * * *
32739944 AAAAATTCGCGT-ATTTCAAAATTGTCGTGTTCTC
1 AAAAATTCTCGTGTTTTAAAAATTTTCGTG-TCTC
* *
32739978 AAAAATTTTCGTGTTTTAAGAATTTTCGTGTCTC
1 AAAAATTCTCGTGTTTTAAAAATTTTCGTGTCTC
* *
32740012 TAAAATTCTCGTGTTTTAAAAATTTTTCTTGTCT-
1 AAAAATTCTCGTGTTTTAAAAA-TTTTCGTGTCTC
32740046 AAAAAT
1 AAAAAT
32740052 AAAAATAAAA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
34 38 0.62
35 23 0.38
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.44
Consensus pattern (34 bp):
AAAAATTCTCGTGTTTTAAAAATTTTCGTGTCTC
Found at i:32740144 original size:17 final size:16
Alignment explanation
Indices: 32740079--32740176 Score: 54
Period size: 17 Copynumber: 5.8 Consensus size: 16
32740069 CAAAAAATGT
* *
32740079 TCGTGTTTTAAATTTT
1 TCGTGTTTTAAAATTC
*
32740095 TTGTGTTTTGAATAAATTTC
1 TCGTGTTTT--A-AAA-TTC
* * *
32740115 TCGTGCTTCAAAAGTTG
1 TCGTGTTTTAAAA-TTC
*
32740132 TCGTGTTTTAAAAATTT
1 TCGTGTTTT-AAAATTC
*
32740149 TCATGTTTCTAAAATTC
1 TCGTGTTT-TAAAATTC
32740166 TCGT-TTTTAAA
1 TCGTGTTTTAAA
32740177 GAAATTGTGT
Statistics
Matches: 62, Mismatches: 14, Indels: 13
0.70 0.16 0.15
Matches are distributed among these distances:
15 4 0.06
16 11 0.18
17 30 0.48
18 7 0.11
19 2 0.03
20 8 0.13
ACGTcount: A:0.26, C:0.10, G:0.13, T:0.51
Consensus pattern (16 bp):
TCGTGTTTTAAAATTC
Found at i:32748514 original size:69 final size:71
Alignment explanation
Indices: 32748392--32748567 Score: 200
Period size: 69 Copynumber: 2.5 Consensus size: 71
32748382 CTGCCTTTAA
* **
32748392 AAAAAATCAACTCATATTGCGA-TAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATT
1 AAAAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATT
32748456 T-T-TTT
65 TATGTTT
** * *
32748461 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT
32748526 ATGTTT
66 ATGTTT
* ** * *
32748532 --TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
32748568 TTTAATTTTT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
69 86 0.93
70 3 0.03
71 3 0.03
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (71 bp):
AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT
ATGTTT
Found at i:32753324 original size:17 final size:17
Alignment explanation
Indices: 32753298--32753584 Score: 145
Period size: 18 Copynumber: 16.4 Consensus size: 17
32753288 TTTTTAAAAA
*
32753298 AAAAACTTTCGTGTTTC
1 AAAAATTTTCGTGTTTC
32753315 AAAAATTTTCACGT-TTTC
1 AAAAATTTT--CGTGTTTC
** * *
32753333 AAAAATTCCCATG-ATC
1 AAAAATTTTCGTGTTTC
*
32753349 AAAAAAAAATTT-GTGTTTTC
1 ---AAAAATTTTCGTG-TTTC
*
32753369 AAAAAATTTTCATGTTTC
1 -AAAAATTTTCGTGTTTC
32753387 AAAAATTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
32753405 AAAAATTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
* * *
32753423 AACAATTCTCATGTTTC
1 AAAAATTTTCGTGTTTC
** * *
32753440 ACGAATTTTCGCGCTTC
1 AAAAATTTTCGTGTTTC
***
32753457 AAAAAAAATCAG-GTTTTC
1 AAAAATTTTC-GTG-TTTC
** *
32753475 AAAAAAATTCGCGTATTTC
1 --AAAAATTTTCGTGTTTC
*
32753494 -AAAATTGTCGTGTTCTC
1 AAAAATTTTCGTGTT-TC
*
32753511 AAAAATTTTCGTGTTTT
1 AAAAATTTTCGTGTTTC
* *
32753528 AAGAATTTTCGTGTCTC
1 AAAAATTTTCGTGTTTC
* * *
32753545 TAAAATTCTCGTGTTTT
1 AAAAATTTTCGTGTTTC
*
32753562 AAAAATTTTTCTTGTTT-
1 AAAAA-TTTTCGTGTTTC
32753579 AAAAAT
1 AAAAAT
32753585 AAAAATAAAA
Statistics
Matches: 203, Mismatches: 49, Indels: 37
0.70 0.17 0.13
Matches are distributed among these distances:
16 16 0.08
17 79 0.39
18 84 0.41
19 16 0.08
20 8 0.04
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.42
Consensus pattern (17 bp):
AAAAATTTTCGTGTTTC
Found at i:32753423 original size:36 final size:36
Alignment explanation
Indices: 32753298--32753570 Score: 161
Period size: 35 Copynumber: 7.8 Consensus size: 36
32753288 TTTTTAAAAA
* **
32753298 AAAAACTTTCGTG-TTTCAAAAATTTTCACGTTTTC
1 AAAAATTTTCGTGTTTTCAAAAATTTTCGTGTTTTC
** * **** *
32753333 AAAAATTCCCATGATCAAAAAAAAATTT-GTGTTTTC
1 AAAAATTTTCGTG-TTTTCAAAAATTTTCGTGTTTTC
*
32753369 AAAAAATTTTCATG-TTTCAAAAATTTTCGTGTTTTC
1 -AAAAATTTTCGTGTTTTCAAAAATTTTCGTGTTTTC
* * *
32753405 AAAAATTTTCGTGTTTTCAACAATTCTCATG-TTTC
1 AAAAATTTTCGTGTTTTCAAAAATTTTCGTGTTTTC
** * * ***
32753440 ACGAATTTTCGCG-CTTCAAAAAAAATCAG-GTTTTC
1 AAAAATTTTCGTGTTTTCAAAAATTTTC-GTGTTTTC
** * * *
32753475 AAAAAAATTCGCGTATTTC-AAAATTGTCGTGTTCTC
1 AAAAATTTTCGTGT-TTTCAAAAATTTTCGTGTTTTC
* *
32753511 AAAAATTTTCGTGTTTT-AAGAATTTTCGTG-TCTC
1 AAAAATTTTCGTGTTTTCAAAAATTTTCGTGTTTTC
* *
32753545 TAAAATTCTCGTGTTTT-AAAAATTTT
1 AAAAATTTTCGTGTTTTCAAAAATTTT
32753571 TCTTGTTTAA
Statistics
Matches: 179, Mismatches: 48, Indels: 23
0.72 0.19 0.09
Matches are distributed among these distances:
34 37 0.21
35 70 0.39
36 50 0.28
37 22 0.12
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (36 bp):
AAAAATTTTCGTGTTTTCAAAAATTTTCGTGTTTTC
Found at i:32753584 original size:34 final size:35
Alignment explanation
Indices: 32753477--32753570 Score: 104
Period size: 34 Copynumber: 2.7 Consensus size: 35
32753467 AGGTTTTCAA
* * * *
32753477 AAAAATTCGCGT-ATTTCAAAATTGTCGTGT-TCT
1 AAAAATTCTCGTGTTTTAAAAATTTTCGTGTCTCT
* *
32753510 CAAAAATTTTCGTGTTTTAAGAATTTTCGTGTCTCT
1 -AAAAATTCTCGTGTTTTAAAAATTTTCGTGTCTCT
32753546 -AAAATTCTCGTGTTTTAAAAATTTT
1 AAAAATTCTCGTGTTTTAAAAATTTT
32753571 TCTTGTTTAA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
34 33 0.66
35 14 0.28
36 3 0.06
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.45
Consensus pattern (35 bp):
AAAAATTCTCGTGTTTTAAAAATTTTCGTGTCTCT
Found at i:32754679 original size:16 final size:16
Alignment explanation
Indices: 32754658--32754712 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
32754648 AGTTTGGTTC
32754658 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
*
32754674 GCTGTAATTGAATAGA
1 GCTGTAATGGAATAGA
* *
32754690 GCTGTAATGGGATAAA
1 GCTGTAATGGAATAGA
32754706 GCTGTAA
1 GCTGTAA
32754713 ACAGTAATTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.27
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:32755117 original size:159 final size:159
Alignment explanation
Indices: 32754828--32755145 Score: 636
Period size: 159 Copynumber: 2.0 Consensus size: 159
32754818 AAATGACTAG
32754828 AATACCCTTAGCAGAATTTTTTTTAAGTAGATGATTGTTGTTATTATTTTTAAGTTTTAATAGGA
1 AATACCCTTAGCAGAATTTTTTTTAAGTAGATGATTGTTGTTATTATTTTTAAGTTTTAATAGGA
32754893 TTAAAAAATAATAACTAATTTAATCATTTTTTAAAATATAATTATTATTAAAATATGAATTAATA
66 TTAAAAAATAATAACTAATTTAATCATTTTTTAAAATATAATTATTATTAAAATATGAATTAATA
32754958 CATATTATAACCCTTAAACTAGATATTAT
131 CATATTATAACCCTTAAACTAGATATTAT
32754987 AATACCCTTAGCAGAATTTTTTTTAAGTAGATGATTGTTGTTATTATTTTTAAGTTTTAATAGGA
1 AATACCCTTAGCAGAATTTTTTTTAAGTAGATGATTGTTGTTATTATTTTTAAGTTTTAATAGGA
32755052 TTAAAAAATAATAACTAATTTAATCATTTTTTAAAATATAATTATTATTAAAATATGAATTAATA
66 TTAAAAAATAATAACTAATTTAATCATTTTTTAAAATATAATTATTATTAAAATATGAATTAATA
32755117 CATATTATAACCCTTAAACTAGATATTAT
131 CATATTATAACCCTTAAACTAGATATTAT
32755146 TTATTTATTT
Statistics
Matches: 159, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
159 159 1.00
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.44
Consensus pattern (159 bp):
AATACCCTTAGCAGAATTTTTTTTAAGTAGATGATTGTTGTTATTATTTTTAAGTTTTAATAGGA
TTAAAAAATAATAACTAATTTAATCATTTTTTAAAATATAATTATTATTAAAATATGAATTAATA
CATATTATAACCCTTAAACTAGATATTAT
Found at i:32756959 original size:26 final size:26
Alignment explanation
Indices: 32756927--32757295 Score: 452
Period size: 26 Copynumber: 14.2 Consensus size: 26
32756917 GTGTTGACCA
*
32756927 AAATACCCTCGATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACCG
* *
32756953 AAATACCCTTGATGGGTAAATTACTG
1 AAATACCCTCGATGGGTAAATTACCG
* *
32756979 AAATACCCTCAATGGGTAAATTACAG
1 AAATACCCTCGATGGGTAAATTACCG
* * *
32757005 AAATATCCTCAATGGGTATATTACCG
1 AAATACCCTCGATGGGTAAATTACCG
*
32757031 AAATACCCTCGATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTACCG
*
32757057 AAATACCCTCGATGGGTAAATTACTG
1 AAATACCCTCGATGGGTAAATTACCG
* *
32757083 AAATACCCTCAATCGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTACCG
** * *
32757109 AAATACCCTTAATAGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTACCG
* *
32757135 AATTACCCTCGAT-GGTAAATTGCCG
1 AAATACCCTCGATGGGTAAATTACCG
* *
32757160 AAATACCCTCGATAGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACCG
* * *
32757186 AAATACCCTCAATGGGTAAAGTATCG
1 AAATACCCTCGATGGGTAAATTACCG
** * *
32757212 AAATACCCTTAATGGGTAAAGTGCCG
1 AAATACCCTCGATGGGTAAATTACCG
* *
32757238 AAATATCCTTGATGGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTACCG
* *
32757264 AAATACCCCCGATGGGTAAATTACTG
1 AAATACCCTCGATGGGTAAATTACCG
32757290 AAATAC
1 AAATAC
32757296 GCCCAAAAGG
Statistics
Matches: 297, Mismatches: 45, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
25 22 0.07
26 275 0.93
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (26 bp):
AAATACCCTCGATGGGTAAATTACCG
Found at i:32763676 original size:28 final size:28
Alignment explanation
Indices: 32763602--32763667 Score: 114
Period size: 28 Copynumber: 2.3 Consensus size: 28
32763592 TCAAGGAAGT
32763602 GGGAGAGTATGGGAGTGTGGTGCCGTTTGG
1 GGGAG-GT-TGGGAGTGTGGTGCCGTTTGG
32763632 GGGAGGTTGGGAGTGTGGTGCCGTTTGG
1 GGGAGGTTGGGAGTGTGGTGCCGTTTGG
32763660 GGGAGGTT
1 GGGAGGTT
32763668 TTGCTTGTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
28 29 0.81
29 2 0.06
30 5 0.14
ACGTcount: A:0.11, C:0.06, G:0.56, T:0.27
Consensus pattern (28 bp):
GGGAGGTTGGGAGTGTGGTGCCGTTTGG
Found at i:32764683 original size:26 final size:26
Alignment explanation
Indices: 32764655--32764885 Score: 304
Period size: 26 Copynumber: 8.9 Consensus size: 26
32764645 GTGTTGATTA
*
32764655 AAATACCCTCGATGGGTAAATTATCA
1 AAATACCCTCGATGGGTAAATTATCG
**
32764681 AAATACATTCGATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTATCG
* *
32764707 AAATACCTTCGATGGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTATCG
*
32764733 CAATACCCTCGATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTATCG
* * *
32764759 AAATACCCTCAATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTATCG
* * *
32764785 AAATACCTTCAATGGGTAAATTATTG
1 AAATACCCTCGATGGGTAAATTATCG
* *
32764811 AAATACCCTCGATTGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTATCG
32764837 AAATACCCTCGATGGGTAAATTA-CTG
1 AAATACCCTCGATGGGTAAATTATC-G
32764863 AAATACCC-CTGATGGGTAAATTA
1 AAATACCCTC-GATGGGTAAATTA
32764886 CTAAAATACC
Statistics
Matches: 181, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
25 2 0.01
26 179 0.99
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (26 bp):
AAATACCCTCGATGGGTAAATTATCG
Found at i:32764719 original size:52 final size:52
Alignment explanation
Indices: 32764655--32764896 Score: 335
Period size: 52 Copynumber: 4.7 Consensus size: 52
32764645 GTGTTGATTA
* **
32764655 AAATACCCTCGATGGGTAAATTATCAAAATACATTCGATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATTATCG
* **
32764707 AAATACCTTCGATGGGTAAATTACCGCAATACCCTCGATGGGTAAATTATCG
1 AAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATTATCG
* * * *
32764759 AAATACCCTCAATGGGTAAATTACCAAAATACCTTCAATGGGTAAATTATTG
1 AAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATTATCG
* *
32764811 AAATACCCTCGATTGGTAAATTACCGAAATACCCTCGATGGGTAAATTA-CTG
1 AAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATTATC-G
*
32764863 AAATACCC-CTGATGGGTAAATTACTAAAATACCC
1 AAATACCCTC-GATGGGTAAATTACCAAAATACCC
32764897 CAGAAGGGTA
Statistics
Matches: 166, Mismatches: 22, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
51 1 0.01
52 165 0.99
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.27
Consensus pattern (52 bp):
AAATACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATTATCG
Found at i:32764886 original size:26 final size:26
Alignment explanation
Indices: 32764655--32764923 Score: 287
Period size: 26 Copynumber: 10.3 Consensus size: 26
32764645 GTGTTGATTA
*
32764655 AAATACCCTCGATGGGTAAATTA-TCA
1 AAATACCCTCGATGGGTAAATTACT-G
**
32764681 AAATACATTCGATGGGTAAATTA-TCG
1 AAATACCCTCGATGGGTAAATTACT-G
* *
32764707 AAATACCTTCGATGGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTACTG
*
32764733 CAATACCCTCGATGGGTAAATTA-TCG
1 AAATACCCTCGATGGGTAAATTACT-G
* **
32764759 AAATACCCTCAATGGGTAAATTACCA
1 AAATACCCTCGATGGGTAAATTACTG
* * *
32764785 AAATACCTTCAATGGGTAAATTATTG
1 AAATACCCTCGATGGGTAAATTACTG
* *
32764811 AAATACCCTCGATTGGTAAATTACCG
1 AAATACCCTCGATGGGTAAATTACTG
32764837 AAATACCCTCGATGGGTAAATTACTG
1 AAATACCCTCGATGGGTAAATTACTG
*
32764863 AAATACCC-CTGATGGGTAAATTACTA
1 AAATACCCTC-GATGGGTAAATTACTG
* *
32764889 AAATACCC-CAGAAGGGTAGATTGACTG
1 AAATACCCTC-GATGGGTAAATT-ACTG
*
32764916 ATATACCC
1 AAATACCC
32764924 CTAGTAGATG
Statistics
Matches: 209, Mismatches: 29, Indels: 9
0.85 0.12 0.04
Matches are distributed among these distances:
25 1 0.00
26 198 0.95
27 10 0.05
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (26 bp):
AAATACCCTCGATGGGTAAATTACTG
Found at i:32765672 original size:21 final size:22
Alignment explanation
Indices: 32765648--32765691 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
32765638 TACAAATAAG
32765648 TTTTCACA-ACAAACAC-TATTT
1 TTTTCA-AGACAAACACGTATTT
32765669 TTTTCAAGACAAACACGTATTT
1 TTTTCAAGACAAACACGTATTT
32765691 T
1 T
32765692 CAATTACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.05
21 14 0.67
22 6 0.29
ACGTcount: A:0.36, C:0.20, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTTCAAGACAAACACGTATTT
Found at i:32766305 original size:142 final size:146
Alignment explanation
Indices: 32766131--32766412 Score: 419
Period size: 146 Copynumber: 2.0 Consensus size: 146
32766121 TCCAAATCAC
* * * * *
32766131 ATTTTATAGATCTATTATTAAGAAATGGGTTTTAGTTT-TAGTTTTTTTGT-TT-TCTTC-TGTA
1 ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTAAAATTTTTTTGTATTATCTTCTTGGA
*
32766192 AATTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTGTTGTGTTCTACAAAT
66 AATTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTGTTATGTTCTACAAAT
32766257 TCATGGAGAGAAGAGA
131 TCATGGAGAGAAGAGA
*
32766273 ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTAAAATTTTTTTTTATTATCTTCTTGGA
1 ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTAAAATTTTTTTGTATTATCTTCTTGGA
* * * * *
32766338 AATTGATTGAGAGTTGAAAGTGTTGAGAAATGATTTTTTTTTCTTTCTTGTTATGTTGTAGAAAT
66 AATTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTGTTATGTTCTACAAAT
*
32766403 TGATGGAGAG
131 TCATGGAGAG
32766413 TAGAAGAGAA
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
142 36 0.29
143 9 0.07
144 2 0.02
145 5 0.04
146 71 0.58
ACGTcount: A:0.29, C:0.05, G:0.19, T:0.47
Consensus pattern (146 bp):
ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTAAAATTTTTTTGTATTATCTTCTTGGA
AATTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTGTTATGTTCTACAAAT
TCATGGAGAGAAGAGA
Found at i:32767077 original size:23 final size:24
Alignment explanation
Indices: 32767033--32767078 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
32767023 AATATAATTT
32767033 TTAAATATTTTTAAGAAATTAATA
1 TTAAATATTTTTAAGAAATTAATA
* *
32767057 TTAATTATTTTTAA-AATTTAAT
1 TTAAATATTTTTAAGAAATTAAT
32767079 TTGAACGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
TTAAATATTTTTAAGAAATTAATA
Found at i:32791086 original size:4 final size:4
Alignment explanation
Indices: 32791077--32791102 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
32791067 GTTTATCAGT
32791077 TTAA TTAA TTAA TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TT
32791103 TCTTTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (4 bp):
TTAA
Found at i:32800977 original size:182 final size:181
Alignment explanation
Indices: 32800642--32801004 Score: 636
Period size: 182 Copynumber: 2.0 Consensus size: 181
32800632 ATAAAGTGTA
*
32800642 AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAATTTATATGAATGAATGAT
1 AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAAGTTATATGAATGAATGAT
*
32800707 TAGCGATGTCACACTAGTTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAATG
66 TAGCGATGTCACACTAATTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAATG
32800772 GATTGGCGAATTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
131 GATTGGCGAATTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
* * *
32800823 AATATGGTATTTTTGTGTGAATATATGATGCTAAGATTTGAGAATAAGTTGTATGAATGAATGAT
1 AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAAGTTATATGAATGAATGAT
**
32800888 TAGCGATGTCACACCTAATTATCCTTTATGTCCTTAAATTTAAGAAAGTTAGGATTAAATTGAAT
66 TAGCGATGTCACA-CTAATTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAAT
* *
32800953 GGATTGGTGAATTGTTGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
130 GGATTGGCGAATTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
32801005 GTTTGTGATT
Statistics
Matches: 172, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
181 74 0.43
182 98 0.57
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (181 bp):
AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAAGTTATATGAATGAATGAT
TAGCGATGTCACACTAATTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAATG
GATTGGCGAATTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
Found at i:32802090 original size:68 final size:70
Alignment explanation
Indices: 32801980--32802165 Score: 225
Period size: 70 Copynumber: 2.7 Consensus size: 70
32801970 AGGTTTGTGG
* * * *
32801980 TGTAAGACCATAGCTC-ACTATGATAACCAATAGAGTCCGCTAGGA-AA-ATAAACATGAGGTTA
1 TGTAAGACCATAGCTCGACTATGACAACAAATAGAGTCCGCTAGGACAACAAAAACAAGAGGTTA
32802042 CATTA
66 CATTA
* * * * *
32802047 TGTAAGACCATGGCTCGGCCATGACAACAAATAGAGTCTGCTAGGACAACAAAAACAAGGGGTTA
1 TGTAAGACCATAGCTCGACTATGACAACAAATAGAGTCCGCTAGGACAACAAAAACAAGAGGTTA
*
32802112 CATTG
66 CATTA
* * *
32802117 TGTAAAACCATAGCTCGACTATGGCAACAAATAAAAGTCCGCTAGGACA
1 TGTAAGACCATAGCTCGACTATGACAACAAAT-AGAGTCCGCTAGGACA
32802166 GTGAACCAGG
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
67 15 0.15
68 24 0.24
69 2 0.02
70 43 0.44
71 14 0.14
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (70 bp):
TGTAAGACCATAGCTCGACTATGACAACAAATAGAGTCCGCTAGGACAACAAAAACAAGAGGTTA
CATTA
Found at i:32804372 original size:13 final size:13
Alignment explanation
Indices: 32804354--32804417 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
32804344 AGTTCTTCAT
32804354 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
32804367 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
32804380 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
* *
32804393 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
32804406 TGCTTTTGAAAA
1 TGCTTTTGAAAA
32804418 TTTTGTGTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:32806551 original size:72 final size:72
Alignment explanation
Indices: 32806461--32806628 Score: 205
Period size: 72 Copynumber: 2.3 Consensus size: 72
32806451 AAAATCACAT
* * * *
32806461 ATAAACAACTATTGATAAAACTA-ATTTAGTA-AAAAATAAGTAGAATATAAATTCAATATCTAA
1 ATAAACAACTATTAATAAAACTAGA-TTA-CACAAAAATAAGTAGAACATAAATTCAATATCCAA
*
32806524 AGACCAAAC
64 AAACCAAAC
* *
32806533 ATAAACAACTTTTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTAATAAAACTAGATTACACAAAAATAAGTAGAACATAAATTCAATATCCAAAA
32806598 ACCAAAC
66 ACCAAAC
* * * *
32806605 ATAAATAATTATTGATAAACCTAG
1 ATAAACAACTATTAATAAAACTAG
32806629 TTTAGCATTG
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
71 1 0.01
72 80 0.98
73 1 0.01
ACGTcount: A:0.55, C:0.13, G:0.06, T:0.26
Consensus pattern (72 bp):
ATAAACAACTATTAATAAAACTAGATTACACAAAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:32807074 original size:18 final size:18
Alignment explanation
Indices: 32807057--32807121 Score: 87
Period size: 18 Copynumber: 3.7 Consensus size: 18
32807047 TCCATCAATT
*
32807057 TGAACATCATTTGAAATT
1 TGAACATCATTTGAAATG
* *
32807075 TGAACACCATTAGAAATG
1 TGAACATCATTTGAAATG
*
32807093 TGAACATCATAT-AAATG
1 TGAACATCATTTGAAATG
32807110 TGAACATCATTT
1 TGAACATCATTT
32807122 CTCATATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
17 16 0.40
18 24 0.60
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Found at i:32809606 original size:19 final size:19
Alignment explanation
Indices: 32809582--32809705 Score: 86
Period size: 19 Copynumber: 6.9 Consensus size: 19
32809572 GGTGGAGAAA
*
32809582 AGGAACAAAGCACCAGCAG
1 AGGAACAAAGAACCAGCAG
* *
32809601 AGGAACAAATAACCAACAG
1 AGGAACAAAGAACCAGCAG
* *
32809620 AGGAAAAAAGAACCAGCACC
1 AGGAACAAAGAACCAGCA-G
32809640 A-G--CAGAAGAA-CA--A-
1 AGGAACA-AAGAACCAGCAG
* *
32809653 A-GAAC-CAGCACCAGCAG
1 AGGAACAAAGAACCAGCAG
* *
32809670 AGGATCAAAGAAGCAGCAG
1 AGGAACAAAGAACCAGCAG
32809689 AGGAACAAAGAACCAGC
1 AGGAACAAAGAACCAGC
32809706 GATTAGAAAA
Statistics
Matches: 79, Mismatches: 16, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
13 5 0.06
14 2 0.03
15 2 0.03
16 1 0.01
17 4 0.05
18 8 0.10
19 56 0.71
20 1 0.01
ACGTcount: A:0.52, C:0.23, G:0.23, T:0.02
Consensus pattern (19 bp):
AGGAACAAAGAACCAGCAG
Found at i:32809640 original size:25 final size:25
Alignment explanation
Indices: 32809590--32809705 Score: 112
Period size: 25 Copynumber: 5.1 Consensus size: 25
32809580 AAAGGAACAA
*
32809590 AGCACCAGCAGAGGAACAAATAA-C
1 AGCACCAGCAGAGGAACAAAGAACC
*
32809614 --CA--A-CAGAGGAAAAAAGAACC
1 AGCACCAGCAGAGGAACAAAGAACC
*
32809634 AGCACCAGCAGAAGAACAAAGAACC
1 AGCACCAGCAGAGGAACAAAGAACC
*
32809659 AGCACCAGCAGAGGATCAAAG-A--
1 AGCACCAGCAGAGGAACAAAGAACC
32809681 AG---CAGCAGAGGAACAAAGAACC
1 AGCACCAGCAGAGGAACAAAGAACC
32809703 AGC
1 AGC
32809706 GATTAGAAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 21
0.73 0.07 0.20
Matches are distributed among these distances:
19 28 0.37
20 3 0.04
22 8 0.11
24 2 0.03
25 34 0.45
ACGTcount: A:0.51, C:0.24, G:0.23, T:0.02
Consensus pattern (25 bp):
AGCACCAGCAGAGGAACAAAGAACC
Found at i:32813894 original size:29 final size:30
Alignment explanation
Indices: 32813834--32813903 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 30
32813824 ACAGATACAA
* *
32813834 CCACAAAGACTCTTCATATAACAGAATCAG
1 CCACAAAGGCTCTTCATACAACAGAATCAG
* *
32813864 CCTCAAAGGCTCTT-ATACAACAGAATTAG
1 CCACAAAGGCTCTTCATACAACAGAATCAG
*
32813893 CCACGAAGGCT
1 CCACAAAGGCT
32813904 TTACTTTAAC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 22 0.65
30 12 0.35
ACGTcount: A:0.39, C:0.27, G:0.14, T:0.20
Consensus pattern (30 bp):
CCACAAAGGCTCTTCATACAACAGAATCAG
Found at i:32821595 original size:23 final size:23
Alignment explanation
Indices: 32821564--32821608 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
32821554 TACAATCAAC
32821564 ATTACACATATC-AACAAGTCATA
1 ATTACACAT-TCAAACAAGTCATA
*
32821587 ATTAGACATTCAAAACAAGTCA
1 ATTACACATTC-AAACAAGTCA
32821609 AAATAAGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 8 0.42
24 9 0.47
ACGTcount: A:0.49, C:0.20, G:0.07, T:0.24
Consensus pattern (23 bp):
ATTACACATTCAAACAAGTCATA
Found at i:32822693 original size:24 final size:24
Alignment explanation
Indices: 32822661--32822711 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
32822651 TACTTGGGTA
*
32822661 ATTTGCCGTCAATTCAACCTTTAC
1 ATTTGCCGTCAATTCAACCATTAC
* *
32822685 ATTTTCCGTCAATTCATCCATTAC
1 ATTTGCCGTCAATTCAACCATTAC
32822709 ATT
1 ATT
32822712 CGTAGTGCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.06, T:0.41
Consensus pattern (24 bp):
ATTTGCCGTCAATTCAACCATTAC
Found at i:32824754 original size:11 final size:11
Alignment explanation
Indices: 32824738--32824784 Score: 58
Period size: 11 Copynumber: 4.1 Consensus size: 11
32824728 TTTTATACTA
32824738 AATAAAATAAT
1 AATAAAATAAT
32824749 AATAAAATATAT
1 AATAAAATA-AT
* *
32824761 CATTAAAATATT
1 -AATAAAATAAT
32824773 AATAAAATAAT
1 AATAAAATAAT
32824784 A
1 A
32824785 TTTATCTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 19 0.63
12 3 0.10
13 8 0.27
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:32825643 original size:27 final size:27
Alignment explanation
Indices: 32825595--32825651 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
32825585 CATCCTGACT
* *
32825595 ATTTGGATTATTATTGCAACCAAGACC
1 ATTTGGATTATCATTGAAACCAAGACC
*
32825622 ATTTGGATTATCATT-AAGACCAAGATC
1 ATTTGGATTATCATTGAA-ACCAAGACC
32825649 ATT
1 ATT
32825652 CCGATTTCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (27 bp):
ATTTGGATTATCATTGAAACCAAGACC
Found at i:32827771 original size:13 final size:13
Alignment explanation
Indices: 32827753--32827782 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
32827743 TTTCAATGAC
32827753 TTAATTAATGGAA
1 TTAATTAATGGAA
*
32827766 TTAATTAATGTAA
1 TTAATTAATGGAA
32827779 TTAA
1 TTAA
32827783 AAGATTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.43
Consensus pattern (13 bp):
TTAATTAATGGAA
Found at i:32829542 original size:17 final size:17
Alignment explanation
Indices: 32829483--32829542 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 17
32829473 AAAGAGTGAG
32829483 AAGTAAAAGTTTAGGCGGA
1 AAGTAAAAGTTT-GG-GGA
*
32829502 AAATAAAAAGTTTTGGGG-
1 AAGT-AAAAG-TTTGGGGA
32829520 AA-TAAAAGTTTGGGGA
1 AAGTAAAAGTTTGGGGA
32829536 AAGTAAA
1 AAGTAAA
32829543 TAGGGGAAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
15 7 0.19
16 7 0.19
17 5 0.14
18 2 0.06
19 5 0.14
20 7 0.19
21 3 0.08
ACGTcount: A:0.47, C:0.02, G:0.28, T:0.23
Consensus pattern (17 bp):
AAGTAAAAGTTTGGGGA
Found at i:32829913 original size:9 final size:9
Alignment explanation
Indices: 32829895--32829931 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
32829885 TATAGTTTGA
*
32829895 TATTCAAAT
1 TATTCGAAT
32829904 TATTCGAAT
1 TATTCGAAT
*
32829913 TATTCGAGT
1 TATTCGAAT
32829922 TATTCGAAT
1 TATTCGAAT
32829931 T
1 T
32829932 CGAAAATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:32833331 original size:64 final size:65
Alignment explanation
Indices: 32833251--32833379 Score: 206
Period size: 65 Copynumber: 2.0 Consensus size: 65
32833241 ATAACCATTC
* *
32833251 AAATTGGGACGAAATGGA-TGTCATACAAAACTACCCAGCCAAATTGCCTTGCAAAAATTTGATT
1 AAATTGGGACGAAATGGACTATCATACAAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
* * *
32833315 AAATTGGGATGAAATGGACTATCATGCCAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
1 AAATTGGGACGAAATGGACTATCATACAAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
32833380 GAATGCACTT
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
64 17 0.29
65 42 0.71
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (65 bp):
AAATTGGGACGAAATGGACTATCATACAAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
Found at i:32833494 original size:100 final size:101
Alignment explanation
Indices: 32833315--32834213 Score: 646
Period size: 101 Copynumber: 9.3 Consensus size: 101
32833305 AAATTTGATT
* * * * *
32833315 AAATTGGGATGAAATGGACTATCATGCCAAACTACCCAGCCAAATTGCCCTGCAAAAATTTGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
** * * *
32833380 GAATGC-ACTTTAAGATGACATTTTTATAAGTATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * *
32833415 AAATTGGGGCGAAATAGACTGTCATGCAAAACTACCTAGCCAAACTGCCCTACCAAAA-TTGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
* * * *
32833479 GAAAGCAAAAATAAGAGGATATTTCTATAAGCAATC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
** * ** * *
32833515 AAATTGAAACAAAATGGGTTGTCATGCTAAACTACCCCTA-CCAAACTCCCCTGCCAAAATTTGA
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTA--CCTAGCCAAACTGCCCTGCCAAAATTTGA
* * *
32833579 TTTAATGTAAAATTAAGAGGACATTTCTATAAGTATTC
64 TTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * * *
32833617 AATTTGGGACGAAATGGACTGTCTTGTCAAACGAACCT-GCTAAACTGCCCTGCCAATATTTGCT
1 AAATTGGGACGAAATGGACTGTCATGCCAAAC-TACCTAGCCAAACTGCCCTGCCAAAATTTGAT
* * * *
32833681 TGAATGCAAAATTAAGAGGTCATTTCTGTTAGCATTT
65 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * *
32833718 AAATTGGAACAAAATAGACTATCATGCCAAACTA--T--------T---CTGCCAAAATTTGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
* * * * *
32833770 TAATGAAAAATTAAGAGGATATTTTTATAAGCACTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * *
32833806 AAATTGGGACAAAATTGACTG---T-------TA---AGTCAAACTGTCCTGCTAAAATTT-ATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
** * *
32833857 GAATGATAAATTAAAAGGACAGTTCTATAA-CTATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGC-ATTC
* * * * * * * *
32833893 AAATTAGGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAAATTGGTT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
* ** * * *
32833958 AAATATAAATTTAAAAGGACATTTTTATAAGCATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
32833994 AAATTGGGACGAAATGGACTGTCATGCCAAACTA-C---CC-AA--------CCAAAATTTGATT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
32834046 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * ** * * * * * *
32834082 AATTTGGGACAAAATGGGTTGTCATGTCAAACTACCTTGCCAAACTACCCTGCTAATATTTGCTT
1 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
* *
32834147 GAATGCAAAATTAAGAGAACATTTCTATTAGCATTC
66 GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * *
32834183 ATATTAGGACGACATGAACTGTTATACCAAA
1 AAATTGGGACGAAATGGACTGTCATGCCAAA
32834214 TTGCTCAAAA
Statistics
Matches: 618, Mismatches: 135, Indels: 91
0.73 0.16 0.11
Matches are distributed among these distances:
78 2 0.00
85 2 0.00
86 1 0.00
87 48 0.08
88 140 0.23
89 1 0.00
90 1 0.00
91 1 0.00
92 2 0.00
93 2 0.00
96 2 0.00
97 4 0.01
98 1 0.00
99 11 0.02
100 117 0.19
101 219 0.35
102 63 0.10
103 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (101 bp):
AAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATT
GAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
Found at i:32833810 original size:88 final size:87
Alignment explanation
Indices: 32833665--32833936 Score: 271
Period size: 88 Copynumber: 3.1 Consensus size: 87
32833655 GCTAAACTGC
* * * * * *
32833665 CCTGCCAATATTTGCTTGAATGCAAAATTAAGAGG-TCATTTCTGTTAGCATTTAAATTGGAACA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAGAGGAT-ATTTCTATAAGCATTCAAATTGG-ACA
32833729 AAATAGACTATCATGCCAAACTAT
64 AAATAGACTATCATGCCAAACTAT
* * * *
32833753 TCTGCCAAAATTTGATTTAATGAAAAATTAAGAGGATATTTTTATAAGCACTCAAATTGGGACAA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAGAGGATATTTCTATAAGCATTCAAATT-GGACAA
* * * * * *
32833818 AATTGACTGTTAAGTCAAACTGT
65 AATAGACTATCATGCCAAACTAT
* * * * *
32833841 CCTGCTAAAATTT-ATTGAATGATAAATTAAAAGGACAGTTCTATAA-CTATTCAAATTAGGACA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAGAGGATATTTCTATAAGC-ATTCAAATT-GGACA
*
32833904 AAATAGACTATCATGCCAAACTAC
64 AAATAGACTATCATGCCAAACTAT
*
32833928 CCAGCCAAA
1 CCTGCCAAA
32833937 CTGCCCTACC
Statistics
Matches: 146, Mismatches: 35, Indels: 7
0.78 0.19 0.04
Matches are distributed among these distances:
86 1 0.01
87 64 0.44
88 78 0.53
89 3 0.02
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (87 bp):
CCTGCCAAAATTTGATTGAATGAAAAATTAAGAGGATATTTCTATAAGCATTCAAATTGGACAAA
ATAGACTATCATGCCAAACTAT
Found at i:32833924 original size:87 final size:87
Alignment explanation
Indices: 32833665--32834096 Score: 256
Period size: 88 Copynumber: 4.8 Consensus size: 87
32833655 GCTAAACTGC
* * * * * * * * * *
32833665 CCTGCCAATATTTGCTTGAATGCAAAATTAAGAGGTCATTTCTGTTAGCATTTAAATTGGAACAA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAAAGGACAGTTCTATAAGCACTCAAATTGG-ACAA
32833730 AATAGACTATCATGCCAAACTAT
65 AATAGACTATCATGCCAAACTAT
* * * * * *
32833753 TCTGCCAAAATTTGATTTAATGAAAAATTAAGAGGATATTTTTATAAGCACTCAAATTGGGACAA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAAAGGACAGTTCTATAAGCACTCAAATT-GGACAA
* * * * * *
32833818 AATTGACTGTTAAGTCAAACTGT
65 AATAGACTATCATGCCAAACTAT
* * *
32833841 CCTGCTAAAATTT-ATTGAATGATAAATTAAAAGGACAGTTCTATAA-CTATTCAAATTAGGACA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAAAGGACAGTTCTATAAGC-ACTCAAATT-GGACA
*
32833904 AAATAGACTATCATGCCAAACTAC
64 AAATAGACTATCATGCCAAACTAT
* * ** ** * * * *
32833928 CCAGCCAAACTGCCCTACCAAAAATTGGTTAAATATAAATTTAAAAGGACATTTTTATAAGCATT
1 CCTGCCAAAAT----T-----TGATTGAATGAA---AAA-TTAAAAGGACAGTTCTATAAGCACT
* * * *
32833993 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
53 CAAATT-GGACAAAATAGACTATCATGCCAAACTAT
** * * * * *
32834029 CCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGACAA
1 CCTGCCAAAATTTGATTGAATGAAAAATTAAAAGGACAGTTCTATAAGCACTCAAATT-GGACAA
32834094 AAT
65 AAT
32834097 GGGTTGTCAT
Statistics
Matches: 266, Mismatches: 61, Indels: 34
0.74 0.17 0.09
Matches are distributed among these distances:
86 1 0.00
87 65 0.24
88 115 0.43
89 5 0.02
91 1 0.00
92 6 0.02
97 7 0.03
100 3 0.01
101 62 0.23
102 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.29
Consensus pattern (87 bp):
CCTGCCAAAATTTGATTGAATGAAAAATTAAAAGGACAGTTCTATAAGCACTCAAATTGGACAAA
ATAGACTATCATGCCAAACTAT
Found at i:32834080 original size:88 final size:88
Alignment explanation
Indices: 32833931--32834117 Score: 239
Period size: 88 Copynumber: 2.1 Consensus size: 88
32833921 AAACTACCCA
* * * * * *
32833931 GCCAAACTGCCCTACCAAAAATTGGTTAAATATAAATTTAAAAGGACATTTTTATAAGCATTCAA
1 GCCAAACTACCCAACCAAAAATTGATTAAATACAAAATTAAAAGGACATTTCTATAAGCATTCAA
*
32833996 ATTGGGACGAAATGGACTGTCAT
66 ATTGGGACAAAATGGACTGTCAT
* * * *
32834019 GCCAAACTACCCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTACCCAACCAAAAATTGATTAAATACAAAATTAAAAGGACATTTCTATAAGCATTCAA
* **
32834084 TTTGGGACAAAATGGGTTGTCAT
66 ATTGGGACAAAATGGACTGTCAT
*
32834107 GTCAAACTACC
1 GCCAAACTACC
32834118 TTGCCAAACT
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (88 bp):
GCCAAACTACCCAACCAAAAATTGATTAAATACAAAATTAAAAGGACATTTCTATAAGCATTCAA
ATTGGGACAAAATGGACTGTCAT
Found at i:32834091 original size:276 final size:277
Alignment explanation
Indices: 32833564--32834096 Score: 647
Period size: 276 Copynumber: 1.9 Consensus size: 277
32833554 ACCAAACTCC
* * * * * * *
32833564 CCTGCCAAAATTTGATTTAATGTAAAATTAAGAGGACATTTCTATAAGTATTCAATTTGGGACGA
1 CCTGCCAAAATTTGATTGAATGTAAAATTAAAAGGACAGTTCTATAACTATTCAAATTAGGACAA
* * * * * * * * * * *
32833629 AATGGACTGTCTTGTCAAACGAACCTGCTAAACTGCCCTGCCAATATTTGCTTGAATGCAAAATT
66 AATAGACTATCATGCCAAACGAACCAGCCAAACTGCCCTACCAAAAATTGCTTAAATACAAAATT
* * * * * ** **
32833694 AAGAGGTCATTTCTGTTAGCATTTAAATTGGAACAAAATAGACTATCATGCCAAACTATTCTGCC
131 AAAAGGACATTTCTATAAGCATTCAAATTGGAACAAAATAGACTATCATGCCAAACTACCCAACC
* * *
32833759 AAAATTTGATTTAATGAAAAATTAAGAGGATATTTTTATAAGCACTCAAATTGGGACAAAATTGA
196 AAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAATTGA
32833824 CTGTTAAGTCAAACTGT
261 CTGTTAAGTCAAACTGT
*
32833841 CCTGCTAAAATTT-ATTGAATG-ATAAATTAAAAGGACAGTTCTATAACTATTCAAATTAGGACA
1 CCTGCCAAAATTTGATTGAATGTA-AAATTAAAAGGACAGTTCTATAACTATTCAAATTAGGACA
* * * * *
32833904 AAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAAATTGGTTAAATATAAATT
65 AAATAGACTATCATGCCAAACGAACCAGCCAAACTGCCCTACCAAAAATTGCTTAAATACAAAAT
* * * * *
32833969 TAAAAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAAC
130 TAAAAGGACATTTCTATAAGCATTCAAATTGGAACAAAATAGACTATCATGCCAAACTACCCAAC
* * *
32834034 CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGACAAAAT
195 CAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAAT
32834097 GGGTTGTCAT
Statistics
Matches: 211, Mismatches: 44, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
275 1 0.00
276 198 0.94
277 12 0.06
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (277 bp):
CCTGCCAAAATTTGATTGAATGTAAAATTAAAAGGACAGTTCTATAACTATTCAAATTAGGACAA
AATAGACTATCATGCCAAACGAACCAGCCAAACTGCCCTACCAAAAATTGCTTAAATACAAAATT
AAAAGGACATTTCTATAAGCATTCAAATTGGAACAAAATAGACTATCATGCCAAACTACCCAACC
AAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAATTGA
CTGTTAAGTCAAACTGT
Found at i:32834116 original size:189 final size:188
Alignment explanation
Indices: 32833776--32834279 Score: 517
Period size: 189 Copynumber: 2.7 Consensus size: 188
32833766 GATTTAATGA
* * * * * * *
32833776 AAAATTAAGAGGATATTTTTATAAGCACTCAAATTGGGACAAAATTGACTGTTAAGTCAAACTGT
1 AAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCCAAACTGC
** * * *
32833841 CCTGCTAAAATTT-ATTGAATGATAAATTAAAAGGACAGTTCTATAA-CTATTCAAATTAGGACA
66 CCAACAAAAATTTGATTGAATGA-AAATTAAGAGGACATTTCTATAAGC-ATTCAAATTAGGACA
* * *
32833904 AAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAAATTGGTTAAATAT
129 AAATAGACTATCATGCCAAACTACCCAGCCAAACTACCCTACCAAAAATTGCTTAAATAC
* * * *
32833964 AAATTTAAAAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
1 AAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCCAAACTGC
* * *
32834029 CCAACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGACAA
66 CCAACAAAAATTTGATTGAATG-AAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAA
* ** * * ** * * * * * *
32834094 AATGGGTTGTCATGTCAAACTACCTTGCCAAACTACCCTGCTAATATTTGCTTGAATGC
130 AATAGACTATCATGCCAAACTACCCAGCCAAACTACCCTACCAAAAATTGCTTAAATAC
* * * * * * * * *
32834153 AAAATTAAGAGAACATTTCTATTAGCATTCATATTAGGACGACATGAACTGTTATACCAAATTGC
1 AAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCCAAACTGC
* * * * *
32834218 TCAAAAAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTGTAAGCATTAAAATTAGGA
66 CCAACAAAAATTTGATTGAATG-AAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGA
32834280 TGAAATGAAC
Statistics
Matches: 257, Mismatches: 56, Indels: 5
0.81 0.18 0.02
Matches are distributed among these distances:
188 64 0.25
189 191 0.74
190 2 0.01
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.29
Consensus pattern (188 bp):
AAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCCAAACTGC
CCAACAAAAATTTGATTGAATGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAA
ATAGACTATCATGCCAAACTACCCAGCCAAACTACCCTACCAAAAATTGCTTAAATAC
Found at i:32834297 original size:42 final size:42
Alignment explanation
Indices: 32834251--32834334 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
32834241 AAAATTAAGA
32834251 GAACATTTCTGTAAGCATTAAAATTAGGATGAAATGAACTGT
1 GAACATTTCTGTAAGCATTAAAATTAGGATGAAATGAACTGT
32834293 GAACATTTCTGTAAGCATTAAAATTAGGATGAAATGAACTGT
1 GAACATTTCTGTAAGCATTAAAATTAGGATGAAATGAACTGT
32834335 ACTGCCAAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (42 bp):
GAACATTTCTGTAAGCATTAAAATTAGGATGAAATGAACTGT
Found at i:32834630 original size:101 final size:101
Alignment explanation
Indices: 32834349--32834631 Score: 397
Period size: 101 Copynumber: 2.8 Consensus size: 101
32834339 CCAAATTTCC
* * * **
32834349 CAGCCAAACTACTCTGCCAAAATAAGATTGAATGCAAAATTAAGAAGACATTTATATAAGCATTC
1 CAGCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTATATAAGCATTC
* *
32834414 AAATTCGGACGAAAAGGAATGTCATGCCAAACTACT
66 AAATTCGGACGAAATGGAATGCCATGCCAAACTACT
* * * *
32834450 CAGCCAAACTGCCCTACCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTC
1 CAGCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTATATAAGCATTC
* * *
32834515 AAATTGGGACGAAATGGACTGCCATGCGAAACTAC-
66 AAATTCGGACGAAATGGAATGCCATGCCAAACTACT
* *
32834550 CTAGCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAGAAGATATTTCTATAAGCATT
1 C-AGCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTATATAAGCATT
*
32834615 CAATTTCGGACGAAATG
65 CAAATTCGGACGAAATG
32834632 TACGTCATGT
Statistics
Matches: 160, Mismatches: 21, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
100 1 0.01
101 159 0.99
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (101 bp):
CAGCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTATATAAGCATTC
AAATTCGGACGAAATGGAATGCCATGCCAAACTACT
Found at i:32834714 original size:86 final size:87
Alignment explanation
Indices: 32834553--32834886 Score: 275
Period size: 87 Copynumber: 3.8 Consensus size: 87
32834543 AAACTACCTA
* *** * * *
32834553 GCCAAACTGCCCTACCAAAATTTGATTGAATGCAAAATTAAGAAGATATTTCTATAAGCATTCAA
1 GCCAAACTACCCTACTTCAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAA
* *
32834618 TTTCGGACGAAAT-GTAC-GTCAT
66 ATT-GGACGAAATAG-ACTCTCAT
* * * * * *
32834640 GTCAAACTACCCTA-TT-AATATTGCTTGAATGCACAGTTAAGAGGACATTTCTATTAGAATTTA
1 GCCAAACTACCCTACTTCAAT-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCA
32834703 AATTGGAACGAAATAGACTCTCAT
65 AATTGG-ACGAAATAGACTCTCAT
* * * *
32834727 GCCAAACTACTCTACTTCAATTTGATTTATTGCAAAATTAAGAGGACATTTCTATAAGTATTCAA
1 GCCAAACTACCCTACTTCAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAA
* * * * *
32834792 ATTGAGACAAAATTGATTGTCAA
66 ATTG-GACGAAATAGACTCTCAT
* * * * * * * *
32834815 GCCAAACTACCCTGC-TAAAATTGATTGAGTG-ATAAATTAAGAGAAAATTTCAATAAGCATTCA
1 GCCAAACTACCCTACTTCAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGAATTCA
32834878 AATTTGGAC
65 AA-TTGGAC
32834887 ATTTTTAAGA
Statistics
Matches: 199, Mismatches: 39, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
85 5 0.03
86 48 0.24
87 72 0.36
88 70 0.35
89 4 0.02
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (87 bp):
GCCAAACTACCCTACTTCAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAA
ATTGGACGAAATAGACTCTCAT
Found at i:32834778 original size:88 final size:84
Alignment explanation
Indices: 32834571--32834886 Score: 251
Period size: 88 Copynumber: 3.6 Consensus size: 84
32834561 GCCCTACCAA
* * * * *
32834571 AATTTGATTGAATGCAAAATTAAGAAGATATTTCTATAAGCATTCAATTTCGGACGAAATGTACG
1 AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATT-GGACGAAATGTACC
*
32834636 TCATGTCAAACTACCCTATT
65 TCATGCCAAACTACCCTATT
* * * * *
32834656 AATATTGCTTGAATGCACAGTTAAGAGGACATTTCTATTAGAATTTAAATTGGAACGAAATAG-A
1 AAT-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATTGG-ACGAAAT-GTA
*
32834720 CTCTCATGCCAAACTACTCTACTT
63 C-CTCATGCCAAACTACCCTA-TT
* * * *
32834744 CAATTTGATTTATTGCAAAATTAAGAGGACATTTCTATAAGTATTCAAATTGAGACAAAAT-TGA
1 -AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATTG-GACGAAATGT-A
** * * *
32834808 TTGTCAAGCCAAACTACCCTGCTA
63 -CCTCATGCCAAACTACCCT-ATT
* * * * * *
32834832 AAATTGATTGAGTG-ATAAATTAAGAGAAAATTTCAATAAGCATTCAAATTTGGAC
1 AATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGAATTCAAA-TTGGAC
32834887 ATTTTTAAGA
Statistics
Matches: 184, Mismatches: 34, Indels: 24
0.76 0.14 0.10
Matches are distributed among these distances:
85 5 0.03
86 48 0.26
87 59 0.32
88 68 0.37
89 4 0.02
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32
Consensus pattern (84 bp):
AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATTGGACGAAATGTACCT
CATGCCAAACTACCCTATT
Found at i:32835138 original size:101 final size:100
Alignment explanation
Indices: 32834995--32835284 Score: 321
Period size: 101 Copynumber: 2.9 Consensus size: 100
32834985 CAAGCTACCT
* * * * *
32834995 AGCCAAACTGTCCTGCTAATATTTTGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAA-AATTTGTTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCA
*
32835060 AATTGGAACAAAATGGACTATCATG-CAAAACTAACC
65 AATTGGAACGAAATGGACTATCATGTC-AAACTAACC
* * * * *
32835096 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATGAGTAATCA
1 AGCCAAACTGCCCTGCCAAAATTTG-TTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCA
* * * * **
32835161 ATTTGGAATGAAATGGATTGTCATGTCAAACTTCCC
65 AATTGGAACGAAATGGACTATCATGTCAAACTAACC
* * * * * * *
32835197 TGACAAACTGCCTTGCCAATATTTGCTTCAATGCAAAATTAAGAGCACATTTATATTAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTG-TTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCA
32835262 AATTGGAACGAAATGGACTATCA
65 AATTGGAACGAAATGGACTATCA
32835285 CTACTCTACC
Statistics
Matches: 155, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
100 5 0.03
101 149 0.96
102 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (100 bp):
AGCCAAACTGCCCTGCCAAAATTTGTTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAA
ATTGGAACGAAATGGACTATCATGTCAAACTAACC
Found at i:32835655 original size:100 final size:101
Alignment explanation
Indices: 32835366--32838008 Score: 1232
Period size: 101 Copynumber: 27.0 Consensus size: 101
32835356 TTGATAGTCA
* *
32835366 AGCCAAACTGCCCTG-CTAAACTTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCATTC
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATTC
* * **
32835429 AAATT-GAGACGAAATGAACTGTCTTGTTAAACTACCC
65 AAATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
* * *
32835466 AACCAAACTGCCCTGCCAAAATTTTG-TTGAATG-AAAATTTAAGAGGGCATTTTTATAAGCATT
1 AGCCAAACTGCCCTGCCAAAA-TTTGATTGAATGCAAAA-TTAAGAGGACATTTCTATAAGCATT
* * *
32835529 TAAATT-GAGACGAAATAGACTGTCATGCCAAACTACCT
64 CAAATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
* ** * *
32835567 AGCCAAATTGCCCTGCCAAAATTTGATTGAATGC-ACTTTAAGAGGACATTTTTATAGGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* *
32835631 AATTGGAATGAAATGGACTATCATGCCAAACTACCC
66 AATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * * * * * **
32835667 AGCAAAACTGCGCTACCAAAA-TTAATTGAATGCAAAAATAATAGGGTATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
32835731 AATTGGGACAAAATGG---GCCATGCAAAACTACCC
66 AATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * * * * *
32835764 AACCAAACTACCTTGTCAAAATTTGATTGAATGCAAAATTAACAGGACATTTCTATAAGTATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* *
32835829 ATTTGGCAA-GAAATGGACTGTCATGTCAAACTACCC
66 AATTGG-AACGAAATGGACTGTCATGCCAAACTACCC
* * * * * * * * * *
32835865 TGCCAAATTGCCCT-TCAAATATTTGCTTGAGTGCAAAATTAAGATGACATTTTTATTAGCTTTT
1 AGCCAAACTGCCCTGCCAAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* *
32835929 AAATTAGAACGATATGGACTGTCATGCCAAACT----
65 AAATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * *
32835962 ------ACT---CTGCCAAAATTTGATTTAATGCAAAATTAAGAGAACATTTCTATAAGTATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
32836018 AA-TGTGAACTAAAT----TG-AATG-----TTA---
66 AATTG-GAACGAAATGGACTGTCATGCCAAACTACCC
* *** *
32836041 AGCCAAACTGCCCTGCTAAAA-TTGATTGAATAATAAATTAAGAGCACATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
*
32836105 AATTGGGAA-AAAATGGAC-GATCATGCCAAACTACCC
66 AATT-GGAACGAAATGGACTG-TCATGCCAAACTACCC
*** * * *
32836141 AGCCAAACTGTAATGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * * * *
32836206 AATTGGGATGAAATGGATTGTCATGCAAAACTTCCT
66 AATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * * * * * *
32836242 AGCCAAACTGCCTTGCCAAAA-TTGATTCAAAGCAAAATTAAGAAGAGATTTATATAAACATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
32836306 AATTGTG-ACAAAATGGACAGTCATGCAAAACTACCC
66 AATTG-GAACGAAATGGACTGTCATGCCAAACTACCC
* * * * * *** * * * * * *
32836342 AACAAAACTACCCAG-CATTAAATTTGGGA-TGAAATGGATTCTCACGA-CAAACTTCCCTACCA
1 AGCCAAACTGCCCTGCCA--AAATTT--GATTG-AATGCAAAATTAAGAGGACA-TT-TCTA-TA
* *** * ** * * * * *
32836404 A-TATT-TTCTT-GAATGCAAATTTAATAGAACAAT-CC-TATTA-GC
58 AGCATTCAAATTGGAACG-AAATGGACT-G-TC-ATGCCAAACTACCC
** * * * * * * *
32836446 ATTCAAATTG---GGACAAAA--TGAATTGTTATTTCAAACCACTT-TGCA--ACAATTT-TGT-
1 AGCCAAACTGCCCTGCCAAAATTTG-ATTG--AATGCAAA--A-TTAAG-AGGAC-ATTTCTATA
* * ** ** * * *
32836501 TGAATGAATAATTAAGAGAAC-ATTTCGGTAAGCAT-TAAAATTGGGGCGAAA-TGGACTGTC
58 AGCATTCA-AATT--G-GAACGAAAT-GG--A-C-TGT--CA-T---GCCAAACT--AC--CC
* * * * * *
32836561 ATTCCAAACTACTCTGACAAAATATGATTTAATGC---------A--ACATTTCTATAAGCATTC
1 A-GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
*
32836615 AAATT-GAGACAAAATGGACTGTCATGCCAAACTACCC
65 AAATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
* * * * * * * *
32836652 AGCCAAATTACCCTG-CAATATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGAATTTA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
32836716 AATGGGATA--AAATAGTCTGTCATTCCAAACTACCC
66 AATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
* * * * * *
32836751 AGCCAAATTGCCCTACCAAAA-TTGATTGAAAGTAAAAATAAGAGGACATTTATATCAA-CATTC
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AAGCATTC
* * *
32836814 AAATTGCG-ACAAAATGGACTATCATGCAAAACTACCC
65 AAATTG-GAACGAAATGGACTGTCATGCCAAACTACCC
* * * *
32836851 TA-CCAAACTGCCCTGCCAAAATTTAATTAAATGGAAAATTAAGAGGGCATTTCTATAAGCATTC
1 -AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * * * *
32836915 -AATTTGAGACGAAATGGATTGTTATGTCATACTGCCC
65 AAATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
* * * ** * **
32836952 TA-ACAAATTGCCCTGCCAATATTTTCTTGAATGCAAAATAAAGAAAACATTTCTATTAA-CATT
1 -AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCATT
* *
32837015 CAAATTGGAACGAAATGGACTGTTATGTC--A-T----
64 CAAATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * *
32837046 A--C-TA-T-TCCT-CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
*
32837105 AATTGGGAA-AAAATGGACT-T--T----AA-T----
66 AATT-GGAACGAAATGGACTGTCATGCCAAACTACCC
* * * * * * *
32837129 -GCCAAGCTACCCTGCCAATATTTGGTTGAATGCAAATTTAAAAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
32837193 AATTGGGACAAAATGGA-TAGTCATGCAAAACTACCC
66 AATTGGAACGAAATGGACT-GTCATGCCAAACTACCC
* * *
32837229 AACCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTC-
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
32837293 AATTTGAGACGAAATGGATTGTCATGTCAAACTAGCC
66 AATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
* * * * * *
32837330 TGCCAAATTGCCCTGCCAACATTTGCTTGAACT-CAAAATTAAGAGAACATTTCTATTAGCATTC
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAA-TGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * *
32837394 AAATTGGGACGAAATAGACTGTTATGCCAAA-T----
65 AAATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * * * *
32837426 -----TACT---CTACCAAAAATTTGATTTAATGAAAAATTAAAAGGACATTTCTATAAGCATTC
1 AGCCAAACTGCCCTGCC-AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
*
32837483 AAATTGGGAA-GAAATTGAC--T-AT------C-A---
65 AAATT-GGAACGAAATGGACTGTCATGCCAAACTACCC
* * * * ** * *
32837507 AGCCAAACTGTCTTGCTAAAA-TTGGTTGAATGTTAAATTAATAGGACATTTCTATAAACATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
32837571 AATTGGGACGAAAAGGACTGTCAAGTCAAACTACTCC
66 AATTGGAACGAAATGGACTGTCATGCCAAACTAC-CC
* * *
32837608 -TCCAAACTGCACTGCCAAAATTTTG-TTGAATG-ATAAATTAAAAGGACATTTCTATAAGCATT
1 AGCCAAACTGCCCTGCCAAAA-TTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATT
* * *
32837670 CAAATT-GAGACGAAAAGGACTGTTATGCCAAACTACTC
64 CAAATTGGA-ACGAAATGGACTGTCATGCCAAACTACCC
** * * *
32837708 AGCCAAACTGCTTTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
32837773 AATTGGGACAAAATTGACTGTCATGCGAAACTACCC
66 AATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * *
32837809 AGCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * * * * *
32837874 ATTTCGTACAAAATGTACTATCATGTCAAACTACCC
66 AATTGGAACGAAATGGACTGTCATGCCAAACTACCC
* * *** * * * * * * *
32837910 TGCCAAACTACCCTATTAATATTTGCTTGAATGCAAAGTTAAAAGGACATTTCTATTAGAATTTA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* *
32837975 AATTGGGACGAAATGGACTCTCATGCCAAACTAC
66 AATTGGAACGAAATGGACTGTCATGCCAAACTAC
32838009 TCTACTTAAA
Statistics
Matches: 1922, Mismatches: 427, Indels: 387
0.70 0.16 0.14
Matches are distributed among these distances:
78 1 0.00
83 5 0.00
84 3 0.00
85 4 0.00
86 9 0.00
87 104 0.05
88 175 0.09
89 81 0.04
90 17 0.01
91 8 0.00
92 4 0.00
93 3 0.00
94 5 0.00
95 3 0.00
96 3 0.00
97 33 0.02
98 57 0.03
99 93 0.05
100 330 0.17
101 846 0.44
102 37 0.02
103 8 0.00
104 30 0.02
105 15 0.01
106 14 0.01
107 7 0.00
110 2 0.00
111 1 0.00
112 1 0.00
115 2 0.00
116 6 0.00
118 3 0.00
119 7 0.00
120 3 0.00
121 2 0.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.29
Consensus pattern (101 bp):
AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
AATTGGAACGAAATGGACTGTCATGCCAAACTACCC
Found at i:32836133 original size:87 final size:87
Alignment explanation
Indices: 32835880--32836147 Score: 220
Period size: 88 Copynumber: 3.0 Consensus size: 87
32835870 AATTGCCCTT
* * * * * * * ** * *
32835880 CAAATATTTGCTTGAGTGCAAAATTAAGATG-ACATTTTTATTAGCTTTTAAATTAGAACGATAT
1 CAAA-ATTTGATTGAATGAAAAATTAAGA-GAACATTTCTATAAGCATTCAAATGGGAACAAAAT
*
32835944 GGACTGTCATGCCAAACTACTCTGC
64 GGAC-GTCATGCCAAACTACCCTGC
* * * * *
32835969 CAAAATTTGATTTAATGCAAAATTAAGAGAACATTTCTATAAGTATTCAAATGTGAACTAAATTG
1 CAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGCATTCAAATGGGAAC-AAAATG
* * * * *
32836034 AATGTTAAGCCAAACTGCCCTGC
65 GACGTCATGCCAAACTACCCTGC
* *
32836057 TAAAA-TTGATTGAAT-AATAAATTAAGAGCACATTTCTATAAGCATTCAAATTGGGAA-AAAAT
1 CAAAATTTGATTGAATGAA-AAATTAAGAGAACATTTCTATAAGCATTCAAA-TGGGAACAAAAT
*
32836119 GGACGATCATGCCAAACTACCCAGC
64 GGACG-TCATGCCAAACTACCCTGC
32836144 CAAA
1 CAAA
32836148 CTGTAATGCC
Statistics
Matches: 141, Mismatches: 33, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
86 8 0.06
87 58 0.41
88 67 0.48
89 8 0.06
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.30
Consensus pattern (87 bp):
CAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGCATTCAAATGGGAACAAAATGG
ACGTCATGCCAAACTACCCTGC
Found at i:32836349 original size:13 final size:13
Alignment explanation
Indices: 32836331--32836355 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32836321 GACAGTCATG
32836331 CAAAACTACCCAA
1 CAAAACTACCCAA
32836344 CAAAACTACCCA
1 CAAAACTACCCA
32836356 GCATTAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.40, G:0.00, T:0.08
Consensus pattern (13 bp):
CAAAACTACCCAA
Found at i:32837152 original size:88 final size:89
Alignment explanation
Indices: 32836962--32837209 Score: 283
Period size: 88 Copynumber: 2.8 Consensus size: 89
32836952 TAACAAATTG
** * **
32836962 CCCTGCCAATATTTTCTTGAATGCAAAATAAAGAAAACATTTCTATTAA-CATTCAAATT-GGAA
1 CCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCATTCAAATTGGGAA
* *
32837025 CGAAATGGACTGTTATGTCATACTAT
65 -AAAATGGACTGTTATGCCATACTAT
* * *
32837051 TCCT-CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAA
1 CCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAA
32837115 AAATGGACT-TTAATGCCA-AGCTA-
66 AAATGGACTGTT-ATGCCATA-CTAT
* * * * *
32837138 CCCTGCCAATATTTGGTTGAATGCAAATTTAAAAGGACATTTTTATAAGCATTCAAATTGGGACA
1 CCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAA
32837203 AAATGGA
66 AAATGGA
32837210 TAGTCATGCA
Statistics
Matches: 136, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
87 9 0.07
88 120 0.88
89 7 0.05
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (89 bp):
CCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAA
AAATGGACTGTTATGCCATACTAT
Found at i:32837246 original size:378 final size:377
Alignment explanation
Indices: 32836751--32837704 Score: 1194
Period size: 378 Copynumber: 2.5 Consensus size: 377
32836741 CAAACTACCC
* * * * * * * *
32836751 AGCCAAATTGCCCTACCAAAATTGATTGAAAGTAAAAATAAGAGGACATTTATATCAACATTCAA
1 AGCCAAACTACCCTGCCAAAATTGGTTGAATGTCAAATTAAAAGGACATTTATAT-AACATTCAA
* *
32836816 ATTGCGACAAAATGGACTA-TCATGCAAAACTACCCTACCAAACTGCCCTGCCAAAATTTAATTA
65 ATTGGGACAAAATGGACTAGTCATGCAAAACTACCC-ACCAAACTGCCCTGCCAAAATTTAATTG
* *
32836880 AATGGAAAATTAAGAGGGCATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAT
129 AATGGAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAA
* *
32836945 ACT-GCCCTAACAAATTGCCCTGCCAATATTTTCTTGAA-TGCAAAATAAAGAAAACATTTCTAT
194 ACTAG-CCTAACAAATTGCCCTGCCAACATTTGCTTGAACT-CAAAATAAAGAAAACATTTCTAT
* * * *
32837008 TAACATTCAAATTGGAACGAAATGGACTGTTATGTCATACTATTCCT-CC-AAAATTTGATTGAA
257 TAACATTCAAATTGGAACGAAATAGACTGTTATGCCAAACTACT-CTACCAAAAATTTGATTGAA
* *
32837071 TGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACT-TTA
321 TGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTATCA
* * *
32837127 ATGCCAAGCTACCCTGCCAATATTTGGTTGAATG-CAAATTTAAAAGGACATTTTTATAAGCATT
1 A-GCCAAACTACCCTGCCAA-AATTGGTTGAATGTCAAA-TTAAAAGGACATTTATATAA-CATT
* *
32837191 CAAATTGGGACAAAATGGA-TAGTCATGCAAAACTACCCAACCAAACTACCCTGCCAAAATTTGA
62 CAAATTGGGACAAAATGGACTAGTCATGCAAAACTACCC-ACCAAACTGCCCTGCCAAAATTTAA
* * *
32837255 TTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTCAATTTGAGACGAAATGGATTGTCATGT
126 TTGAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGT
** * *
32837320 CAAACTAGCCTGCCAAATTGCCCTGCCAACATTTGCTTGAACTCAAAATTAAGAGAACATTTCTA
191 CAAACTAGCCTAACAAATTGCCCTGCCAACATTTGCTTGAACTCAAAATAAAGAAAACATTTCTA
* * * *
32837385 TTAGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAATTACTCTACCAAAAATTTGATTTAA
256 TTAACATTCAAATTGGAACGAAATAGACTGTTATGCCAAACTACTCTACCAAAAATTTGATTGAA
* *
32837450 TGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAGAAATTGACTATCA
321 TGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTATCA
** * * * * *
32837507 AGCCAAACTGTCTTGCTAAAATTGGTTGAATGTTAAATTAATAGGACATTTCTATAAACATTCAA
1 AGCCAAACTACCCTGCCAAAATTGGTTGAATGTCAAATTAAAAGGACATTTATAT-AACATTCAA
* * * **
32837572 ATTGGGACGAAAA-GGACT-GTCAAGTC-AAACTACTCCTCCAAACTGCACTGCCAAAATTTTGT
65 ATTGGGAC-AAAATGGACTAGTCATG-CAAAACTAC-CCACCAAACTGCCCTGCCAAAATTTAAT
* * * * *
32837634 TGAAT-GATAAATTAAAAGGACATTTCTATAAGCATTCAAATTGAGACGAAAAGGACTGTTATGC
127 TGAATGGA-AAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGT
32837698 CAAACTA
191 CAAACTA
32837705 CTCAGCCAAA
Statistics
Matches: 499, Mismatches: 62, Indels: 32
0.84 0.10 0.05
Matches are distributed among these distances:
376 1 0.00
377 24 0.05
378 380 0.76
379 91 0.18
380 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (377 bp):
AGCCAAACTACCCTGCCAAAATTGGTTGAATGTCAAATTAAAAGGACATTTATATAACATTCAAA
TTGGGACAAAATGGACTAGTCATGCAAAACTACCCACCAAACTGCCCTGCCAAAATTTAATTGAA
TGGAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAAAC
TAGCCTAACAAATTGCCCTGCCAACATTTGCTTGAACTCAAAATAAAGAAAACATTTCTATTAAC
ATTCAAATTGGAACGAAATAGACTGTTATGCCAAACTACTCTACCAAAAATTTGATTGAATGAAA
AATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTATCA
Found at i:32837407 original size:479 final size:476
Alignment explanation
Indices: 32836653--32840302 Score: 1811
Period size: 478 Copynumber: 7.6 Consensus size: 476
32836643 AAACTACCCA
* * * * * *
32836653 GCCAAATTACCCTG-CAATATTTGGTTGAATGCA-AATTTAAGAGGACATTTTTATAAGAATTTA
1 GCCAAACTACCCTGCCAATATTTGGTTGAATG-ATAAATTAAAAGGACATTTCTATAAGCATTCA
* * * * * * *
32836716 AA-TGGGATAAAATAGTCTGTCATTCCAAACTACCCAGCCAAATTGCCCTACCAAAA-TTGATTG
65 AATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCCTGCCAAAATTTGATTG
* * * * * * *
32836779 AAAGTAAAAATAAGAGGACATTTATATCAA-CATTCAAATTGCGACAAAATGGACTATCATGCAA
130 AATGCAAAATTAAGAGGACATTTTTAT-AAGCATTCAAATTGGGACAAAATGGACTGTCATGCGA
* * * * * *
32836843 AACTACCCTA-CCAAACTGCCCTGCCAAAATTTAATTAAATGGAAAATTAAGAGGGCATTTCTAT
194 AACTACCC-AGCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTAT
* * * *
32836907 AAGCATTCAATTTGAGACGAAATGGATTGTTATGTCATACTGCCCTAACAAATTGCCCTGCCAAT
258 AAGCATTCAAATTGGGACGAAAT-GA-TG-TATGTCATACTGCCCT--CAAATTACCCTACCAAT
* ** *
32836972 ATTTTCTTGAATGCAAAATAAAGAAAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTG
318 ATTTGCTTGAATGCAAAATAAA-AGGACATTTCTATTAACATTCAAATTGGAACGAAATGGACTA
* * * * *
32837037 TTATGTCATACTATTCCT-CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCA
382 TCATGCCAAACTACTCCTACTAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCA
32837101 TTCAAATTGGGAAAAAATGGACTT-T-AAT
447 TTCAAATTGGGAAAAAATGGACTTATAAAT
* * *
32837129 GCCAAGCTACCCTGCCAATATTTGGTTGAATGCA-AATTTAAAAGGACATTTTTATAAGCATTCA
1 GCCAAACTACCCTGCCAATATTTGGTTGAATG-ATAAATTAAAAGGACATTTCTATAAGCATTCA
* *
32837193 AATTGGGACAAAATGGA-TAGTCATGCAAAACTACCCAACCAAACTACCCTGCCAAAATTTGATT
65 AATTGGGACAAAATGGACT-GTCATGCCAAACTACCCAACCAAACTGCCCTGCCAAAATTTGATT
* * * * * *
32837257 GAATGCAAAATTAAGAGGACATTTCTATAAGTATTCAATTTGAGACGAAATGGATTGTCATGTC-
129 GAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACAAAATGGACTGTCATG-CG
* * * *
32837321 AAACTAGCCTGCCAAATTGCCCTG-CCAACATTTGCTTGAACT-CAAAATTAAG-AGAACATTTC
193 AAACTACCCAGCCAAACTGCCCTGCCCAA-ATTTGATTGAA-TGCAAAATTAAGAAG-ACATTTC
* * *
32837383 TATTAGCATTCAAATTGGGACGAAAT-A-G-ACTGT--TA-TG--C-CAAATTACTCTACCAAAA
255 TATAAGCATTCAAATTGGGACGAAATGATGTA-TGTCATACTGCCCTCAAATTACCCTACC-AAT
* * * *
32837439 ATTTGATTTAATGAAAAATTAAAAGGACATTTCTA-TAAGCATTCAAATTGGGAA-GAAATTGAC
318 ATTTGCTTGAATGCAAAA-TAAAAGGACATTTCTATTAA-CATTCAAATT-GGAACGAAATGGAC
* * * * * ** * *
32837502 TATCAAGCCAAACT-GTCTTGCTAAAA-TTGGTTGAATGTTAAATTAATAGGACATTTCTATAAA
380 TATCATGCCAAACTACTCCTACTAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAG
*
32837565 CATTCAAATTGGGACGAAAA-GGACTGTCAAGTCAAACTACT
445 CATTCAAATTGGGA-AAAAATGGACT-T--A-T--AA--A-T
* * * * *
32837606 CCTCCAAACTGCACTGCCAAAATTTTGTTGAATGATAAATTAAAAGGACATTTCTATAAGCATTC
1 --GCCAAACTACCCTGCCAATATTTGGTTGAATGATAAATTAAAAGGACATTTCTATAAGCATTC
* * * * ** *
32837671 AAATTGAGACGAAAA-GGACTGTTATGCCAAACTACTCAGCCAAACTGCTTTGCCAAAATTTGGT
64 AAATTGGGAC-AAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCCTGCCAAAATTTGAT
* *
32837735 TGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACAAAATTGACTGTCATGCG
128 TGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCG
*
32837800 AAACTACCCAGCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAATAAGACATTTCTAT
193 AAACTACCCAGCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTAT
* * * * * * * * **
32837865 AAGCATTCAATTTCGTACAAAATGTACTATCATGTCAAACTACCCTGCCAAACTACCCTATTAAT
258 AAGCATTCAAATTGGGACGAAATG-A-TGT-ATGTCATACTGCCCT--CAAATTACCCTACCAAT
* * *
32837930 ATTTGCTTGAATGCAAAGTTAAAAGGACATTTCTATTAGA-ATTTAAATTGGGACGAAATGGACT
318 ATTTGCTTGAATGCAAA-ATAAAAGGACATTTCTATTA-ACATTCAAATTGGAACGAAATGGACT
* * * * *
32837994 CTCATGCCAAACTACT-CTACTTAAATTTGATTTAAT-ACAAAATTAAGAAGACAATTCTATAAG
381 ATCATGCCAAACTACTCCTACTAAAATTTGATTGAATGA-AAAATTAAGAGGACATTTCTATAAG
* ** * * *
32838057 TATTCAAATTGGGACGAAATTGA-TTGTCAA-
445 CATTCAAATTGGGAAAAAATGGACTTATAAAT
* * * * ** * * *
32838087 GCCAAACTGCCTTGCTAA-AATTAATTGAATGATAAATTAAGAGAAAATTTCTATAAGCATTCAA
1 GCCAAACTACCCTGCCAATATTTGGTTGAATGATAAATTAAAAGGACATTTCTATAAGCATTCAA
* * * * *
32838151 ATTGGGACGAAATTGACTGTCATGCCAAACTA-CCAAGCCAAACTGCCCTGCTAATATTTGGTTG
66 ATTGGGACAAAATGGACTGTCATGCCAAACTACCCAA-CCAAACTGCCCTGCCAAAATTTGATTG
* * *
32838215 AATGCAAATTTAAGAGGATATTTTTATAAGCATTCAAATTGGGACAAAATTGACTGTCATGCGAA
130 AATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCGAA
* *
32838280 ACTACCCAGTCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAATAAGACATTTCTATAA
195 ACTACCCAGCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAA
* * * * * * *
32838345 GCATTCAAATTGGGACGAAATTGACTGTCATGCCAAACTACCAAGC-CAAACTGCCCTGCTAATA
260 GCATTCAAATTGGGACGAAA-TGA-TGT-ATGTCATACTGCC---CTCAAATTACCCTACCAATA
* * * * * * * * *
32838409 TTTGGTTGAATGCAAATTTAAGAGGAAATTTTTA-TAAGTATTCATATTGGAATGAAATGGACTG
319 TTTGCTTGAATGCAAA-ATAAAAGGACATTTCTATTAA-CATTCAAATTGGAACGAAATGGACTA
* *
32838473 T-ATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACA
382 TCATGCCAAACTA-CT---C---CT--ACT---AAAATTTGATTGAATGAAAAATTAAGAGGACA
* * * * * *
32838537 TTTCTATGAGTAATC-AATTTGGAACGAAATGGATTGTCATGTCAATAT
435 TTTCTATAAGCATTCAAATTGGGAA-AAAATGGACT-T-A--T-AA-AT
* * * * * * * * *
32838585 TCTCTAGGAAACTGCCCTGCCAATATTTGCTTCAAT-ACAAAATTAAGAGCACATTTCTATTAGT
1 GC-C----AAACTACCCTGCCAATATTTGGTTGAATGA-TAAATTAAAAGGACATTTCTATAAGC
* *
32838649 ATTCAAATTGGGACGGAAA-GGACTGTCATGCCAAA-T---------TACT---CTGCCAAAATT
60 ATTCAAATTGGGAC-AAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCCTGCCAAAATT
* * * * * *
32838700 TGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTTAAAATGGGACGAAAT----TG--A
124 TGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACAAAATGGACTGTCA
* * * * * *
32838759 T-----AGT--CAAGCCAAACTGCTCTG-CTAAAATTGATTGAATG-ATAAATTAAGAGGACATT
189 TGCGAAACTACCCAGCCAAACTGCCCTGCCCAAATTTGATTGAATGCA-AAATTAAGAAGACATT
* * * * * * * * **
32838815 TCTATAAGCATTCAAATTGAGG-CGAAATGGACTATCTTGCCAAAATACCCAACCAAACTGTCCT
253 TCTATAAGCATTCAAATTG-GGACGAAAT-GA-TGT-ATGTCATACTGCCC--TCAAATTACCCT
* * ** * * * * * * * *
32838879 GCCAAAATTTTATTGACTGCAAATTTAAGAGGACATTTTTA-TAAGAATTTATATT-GAGATGAA
312 ACCAATATTTGCTTGAATGCAAA-ATAAAAGGACATTTCTATTAA-CATTCAAATTGGA-ACGAA
* * * * **
32838942 ATGGACTGTCATGCCAAACTAACAAGCCAAATTGCCCTGCCAAAATTTGATTGAATG-CACTTTA
374 ATGGACTATCATGCCAAACT----A--C----T--CCTACTAAAATTTGATTGAATGAAAAATTA
* * * * ** *
32839006 ATATGACACTTT-TATAGGCATTCAAATTAGGATGAAATAGACTGTCATGCCAAACT
427 AGAGGACA-TTTCTATAAGCATTCAAATTGGGAAAAAATGGACT-T-AT---AAA-T
* * * * * * ** **
32839062 ACCCAGCCAAACTGCGCTACCAA-A-ATGAATTGAATGCA-AAAATAATTGGGTATTTCTATAAG
1 -----GCCAAACTACCCTGCCAATATTTG-GTTGAATG-ATAAATTAAAAGGACATTTCTATAAG
* * * * *
32839124 CATTCACATTGGGACAAAATGGGCTGTCATGCAAAACTACCCAACCAAACTGCCTTGTCAAAATT
59 CATTCAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCCTGCCAAAATT
* * * * * *
32839189 TGATTGAATAG-AAAATTAACAGGATATTTCTATAAGCATTCAATTTGGCA-AGAAATGGATTGT
124 TGATTGAAT-GCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACA-AAATGGACTGT
* * ** * * *
32839252 CATGTCG-AACTACCCTGCCAAACTACCC-AACAAATATTTGCTTGAGTGCAAAATTAA-AACGA
187 CATG-CGAAACTACCCAGCCAAACTGCCCTGCCCAA-ATTTGATTGAATGCAAAATTAAGAA-GA
* * * * * ** *
32839314 CATTTCTATTAGCATTTAAATTGGAACGAAATG--G-ACTG-C-CA-TG--C-CAAACTACTTTG
249 CATTTCTATAAGCATTCAAATTGGGACGAAATGATGTA-TGTCATACTGCCCTCAAATTACCCTA
* * * * * * * *
32839370 GCAAAATTTGATTTAATTCAAAATTAAGACGACATTTCTA-TAAGTATTCAAATTTGG-ACGAAA
313 CCAATATTTGCTTGAATGCAAAA-TAAAAGGACATTTCTATTAA-CATTCAAA-TTGGAACGAAA
* * * * * * *
32839433 TTGACTGTCAAGCCAAACTGC-CCTGCTAAAA-TTGATTGAATGATAAATTAAAAGGACATTTCT
375 TGGACTATCATGCCAAACTACTCCTACTAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCT
* **
32839496 ATAAGCATTCAATTTGGGACGAAATGGACGGTTATGCCAAACT
440 ATAAGCATTCAAATTGGGAAAAAATGGAC--TTAT---AAA-T
** * * * * * *
32839539 ACCCAGCCAAACTGTCCTGCCAAAATTTGGTTGAATGCA-AATTTAAGAGAACATTTTTTTAAGC
1 -----GCCAAACTACCCTGCCAATATTTGGTTGAATG-ATAAATTAAAAGGACATTTCTATAAGC
* *** * * * * * * * *
32839603 ATTCAAATTTGGTTGAAATAGACTATTATACAAAACTA-CCAAGCTAAATTGCCTTGCCAAAA-T
60 ATTCAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAA-CCAAACTGCCCTGCCAAAATT
* * * * * * * *
32839666 TGATTAAAAGCAAAACTAAGAGGCCATTTATATAAGCGTTCAAATTGTGACAAAATCGACTGTCA
124 TGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACAAAATGGACTGTCA
* * * * * *
32839731 TG-GAAAACTACCCAACCAGACTGCCCTGCCAAAATTTGATTAAATTG-AAAATTGAGAGGACAT
189 TGCG-AAACTACCCAGCCAAACTGCCCTGCCCAAATTTGATTGAA-TGCAAAATTAAGAAGACAT
* * * * * * *
32839794 TTCTATAAGCAAT-AAATTTGCGACAAAATGGATTGTCATG-CTAAACTACCATGCCAAAACTAC
252 TTCTATAAGCATTCAAA-TTGGGACGAAAT-GA-TGT-ATGTC-ATACTGCCCT--C-AAATTAC
* * * * * * *
32839857 CCTGCTAATATTTTCTTAAATGCAAAATTCAGAGAACATTTCTATTAACATTCAAATTGGAACGA
309 CCTACCAATATTTGCTTGAATGCAAAA-TAAAAGGACATTTCTATTAACATTCAAATTGGAACGA
** * * *
32839922 AATGGACTATCACACCAAACTACT-CTGC-CAAATTTGATTGAATGAAAAATTAAGAGAACATTT
373 AATGGACTATCATGCCAAACTACTCCTACTAAAATTTGATTGAATGAAAAATTAAGAGGACATTT
* * * **
32839985 CTATACGTATTAAAATTGGGATGAAATGGACTGTAATGCCAAACT
438 CTATAAGCATTCAAATTGGGAAAAAATGGACT-T-AT---AAA-T
** * * *
32840030 ACCCAGCCAAACCGCCCTGCCAAAATTAGATTGAATGCA-AAATTAATAA-GACATTTCTATAAG
1 -----GCCAAACTACCCTGCCAATATTTGGTTGAATG-ATAAATTAA-AAGGACATTTCTATAAG
* *** * * * * *
32840093 CATTCAAATTAGGAGGGAATTGATTGTCA-G------------GCCAAACTGCCTTGCTAAAA-T
59 CATTCAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCCTGCCAAAATT
* * * * * *
32840144 TCATTGAATGCAAAATTAAGAGGACATTTCTCTAAGCATTCAAATTGGGACGAAATGGACTATCT
124 TGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACAAAATGGACTGTCA
* * * * * * * * ** *
32840209 TGCCAAACTACTCATCCAAACTTCCCTACCAAAATTTGGTTGAATGCAAATTTTTGAGGACATTT
189 TGCGAAACTACCCAGCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAAGAAGACATTT
* **
32840274 TTATAATTATTCAAATTGGGACGAAATGA
254 CTATAAGCATTCAAATTGGGACGAAATGA
32840303 ACTGTCATTC
Statistics
Matches: 2506, Mismatches: 462, Indels: 411
0.74 0.14 0.12
Matches are distributed among these distances:
466 68 0.03
467 63 0.03
468 8 0.00
469 1 0.00
471 3 0.00
472 2 0.00
473 1 0.00
474 5 0.00
475 8 0.00
476 87 0.03
477 447 0.18
478 636 0.25
479 367 0.15
480 15 0.01
481 5 0.00
482 5 0.00
483 6 0.00
484 5 0.00
485 7 0.00
486 7 0.00
487 7 0.00
489 63 0.03
490 129 0.05
491 337 0.13
492 62 0.02
493 4 0.00
494 3 0.00
495 4 0.00
496 2 0.00
497 2 0.00
498 3 0.00
499 1 0.00
500 2 0.00
502 17 0.01
503 61 0.02
504 59 0.02
505 4 0.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (476 bp):
GCCAAACTACCCTGCCAATATTTGGTTGAATGATAAATTAAAAGGACATTTCTATAAGCATTCAA
ATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCCTGCCAAAATTTGATTGA
ATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGGACAAAATGGACTGTCATGCGAAA
CTACCCAGCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAG
CATTCAAATTGGGACGAAATGATGTATGTCATACTGCCCTCAAATTACCCTACCAATATTTGCTT
GAATGCAAAATAAAAGGACATTTCTATTAACATTCAAATTGGAACGAAATGGACTATCATGCCAA
ACTACTCCTACTAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG
GGAAAAAATGGACTTATAAAT
Found at i:32837752 original size:378 final size:374
Alignment explanation
Indices: 32836752--32842639 Score: 1663
Period size: 377 Copynumber: 15.4 Consensus size: 374
32836742 AAACTACCCA
* * * * * * * *
32836752 GCCAAATTGCCCTACCAAAATTGATTGAAAGTAAAAATAAGAGGACATTTATATCAACATTCAAA
1 GCCAAACTACCCTGCCAAAATTGGTTGAATGTAAAATTAAAAGGACATTTATATAAACATTCAAA
* * ** *
32836817 TTGCGACAAAATGGACTATCATGCAAAACTACCCTACCAAACTGCCCTGCCAAAATTTAATTAAA
66 TTGGGACAAAATGGACTGTCATGCAAAACTACCCT-CCAAACTGCCCTGCCAAAATTTTGTTGAA
* *
32836882 TGGAAAATTAAGAGGGCATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCATAC
130 T-GAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAAAC
* * * * * * *
32836947 TGCCCTA-ACAAATTGCCCTGCCAATATTTTCTTGAATGCAAAATAAAGAAAACATTTCTATTAA
194 T-ACC-AGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGAACATTTCTATTAG
* * * * *
32837011 CATTCAAATTGGAACGAAATGGACTGTTATGTCATACTATTCCTCCAAAATTTGATTGAATGAAA
257 CATTCAAATTGGGACGAAATAGACTGTTATGCCAAACTACTCCTCCAAAATTTGATTGAATGAAA
* *
32837076 AATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTTTAAT
322 AATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTTCAAT
* * * * * *
32837129 GCCAAGCTACCCTGCCAATATTTGGTTGAATGCAAATTTAAAAGGACATTTTTATAAGCATTCAA
1 GCCAAACTACCCTGCCAA-AATTGGTTGAATGTAAAATTAAAAGGACATTTATATAAACATTCAA
* *
32837194 ATTGGGACAAAATGGA-TAGTCATGCAAAACTACCCAACCAAACTACCCTGCCAAAA-TTTGATT
65 ATTGGGACAAAATGGACT-GTCATGCAAAACTACCC-TCCAAACTGCCCTGCCAAAATTTTG-TT
* *
32837257 GAATGCAAAATTAAGAGGACATTTCTATAAGTATTCAATTTGAGACGAAATGGATTGTCATGTCA
127 GAATG-AAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCA
* *
32837322 AACTAGCCTGCCAAATTGCCCTGCCAACATTTGCTTGAACT-CAAAATTAAGAGAACATTTCTAT
191 AACTA-CCAGCCAAATTGCCCTGCCAAAATTTGCTTGAA-TGCAAAATTAAGAGAACATTTCTAT
* *
32837386 TAGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAATTACT-CTACCAAAAATTTGATTTAA
254 TAGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAACTACTCCT-CC-AAAATTTGATTGAA
* *
32837450 TGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAGAAATTGACTATCAA-
317 TGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACT-TCAAT
** * * * * *
32837508 GCCAAACTGTCTTGCTAAAATTGGTTGAATGTTAAATTAATAGGACATTTCTATAAACATTCAAA
1 GCCAAACTACCCTGCCAAAATTGGTTGAATGTAAAATTAAAAGGACATTTATATAAACATTCAAA
* *
32837573 TTGGGACGAAAA-GGACTGTCAAGTC-AAACTACTCCTCCAAACTGCACTGCCAAAATTTTGTTG
66 TTGGGAC-AAAATGGACTGTCATG-CAAAACTAC-CCTCCAAACTGCCCTGCCAAAATTTTGTTG
* * * * *
32837636 AATGATAAATTAAAAGGACATTTCTATAAGCATTCAAATTGAGACGAAAAGGACTGTTATGCCAA
128 AATGA-AAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAA
* ** * * * * *
32837701 ACTACTCAGCCAAACTGCTTTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAA
192 ACTAC-CAGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGAACATTTCTATTA
* * * * *
32837766 GCATTCAAATTGGGACAAAATTGACTGTCATGCGAAACTACCCAGCCAAACTGCCCTGCCCAAAT
256 GCATTCAAATTGGGACGAAATAGACTGTTATGCCAAACT----------ACT--CCT-CCAAAAT
* * * * * *
32837831 TTGATTGAATGCAAAATTAATAA-GACATTTCTATAAGCATTCAATTTCGTACAAAATGTACTAT
308 TTGATTGAATGAAAAATTAA-AAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACT-T
32837895 C-AT
371 CAAT
* * * * *
32837898 GTCAAACTACCCTGCCAAACTACCCTATTAATATTTGCTTGAATGCAAAGTTAAAAGGACATTTC
1 GCCAAACTACCCTG---------CC-A--AA-A-TTGGTTGAATGTAAAATTAAAAGGACATTTA
* * * * * *
32837963 TATTAGA-ATTTAAATTGGGACGAAATGGACTCTCATGCCAAACTA--CT-C-TACT----T---
52 TA-TAAACATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCTCCAAACTGCCCTGCC
* * * * * * *
32838016 -AAA-TTTGATTTAATACAAAATTAAGAAGACAATTCTATAAGTATTCAAATTGGGACG-AA---
116 AAAATTTTG-TTGAAT-GAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGG
* * * * **
32838075 ATTGAT-TGT----C-A--AGCCAAACTGCCTTGCTAAAA-TTAATTGAATG-ATAAATTAAGAG
179 ATTGTTATGTCAAACTACCAGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCA-AAATTAAGAG
* * * *
32838130 AAAATTTCTATAAGCATTCAAATTGGGACGAAATTGACTGTCATGCCAAACTACCAAGCCAAACT
243 AACATTTCTATTAGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAACT----------ACT
* * * * * * * * *
32838195 GCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGGATATTTTTATAAGCATTCAAATTGGGAC
298 --CCT-CCAAAATTTGATTGAATGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAA
*
32838260 AAAATTGACTGTCATGCGAAACT
360 AAAATGGAC--T--T-C--AA-T
* * * * * * *
32838283 ACCCAGTCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAATAA-GACATTTCTATAAGC
1 -----GCCAAACTACCCTG-CCAAAATTGGTTGAATGTAAAATTAA-AAGGACATTTATATAAAC
* * * ** * *
32838347 ATTCAAATTGGGACGAAATTGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCTAATATTT
59 ATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACC-CTCCAAACTGCCCTGCCAAAATTT
* * * * * * * *
32838412 GGTTGAATGCAAATTTAAGAGGAAATTTTTATAAGTATTCATATTGGA-ATGAAATGGACTG-TA
123 TGTTGAATG-AAAATTAAGAGGACATTTCTATAAGCATTCA-ATTTGAGACGAAATGGATTGTTA
* * * *
32838475 TGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTT
186 TGTCAAACTACC-AGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGAACATTT
* * * * * * * * *
32838540 CTATGAGTAATCAATTTGGAACGAAATGGATTGTCATGTCAATATTCTCTAGGAAACTGCCCTGC
250 CTATTAGCATTCAAATTGGGACGAAATAGACTGTTATGCCAA-A----CT-----ACT--CCT-C
* * * * * * * **
32838605 CAATATTTGCTTCAAT-ACAAAATTAAGAGCACATTTCTATTAGTATTCAAATTGGGACGGAAA-
302 CAAAATTTGATTGAATGA-AAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGA-AAAAAT
32838668 GGACTGTC-AT
365 GGACT-TCAAT
* * * * ** * * * *
32838678 GCCAAATTACTCTGCCAAAATTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTTAA
1 GCCAAACTACCCTGCCAAAA-TTGGTTGAATGTAAAATTAAAAGGACATTTATATAAACATTCAA
* * * * * *
32838743 AATGGGACGAAATTGA---T-A-GTC---A--A---GCCAAACTGCTCTGCTAAAA--TTGATTG
65 ATTGGGACAAAATGGACTGTCATG-CAAAACTACCCTCCAAACTGCCCTGCCAAAATTTTG-TTG
* * * * *
32838793 AATGATAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAGGCGAAATGGACTATCT-TGCCA
128 AATGA-AAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGT-TATGTCA
* * * * ** * * * * *
32838857 AAATACCCAACCAAACTGTCCTGCCAAAATTTTATTGACTGCAAATTTAAGAGGACATTTTTATA
191 AACTA-CCAGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGAACATTTCTATT
* * * * * * *
32838922 AGAATTTATATTGAGATGAAATGGACTGTCATGCCAAACTAACAAGCCAAATTGCCCTGCCAAAA
255 AGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAACT----A--C----T--CCT-CCAAAA
* ** * * * * ** *
32838987 TTTGATTGAATG-CACTTTAATATGACACTTT-TATAGGCATTCAAATTAGGATGAAATAGACTG
307 TTTGATTGAATGAAAAATTAAAAGGACA-TTTCTATAAGCATTCAAATTGGGAAAAAATGGACT-
32839050 TC-AT
370 TCAAT
* * * * ** ** *
32839054 GCCAAACTACCCAGCCAAACTGCGCTACCAAAATGAATTGAATGCAAAAATAATTGGGTATTTCT
1 GCCAAACT----A-CC---CTGC-C-A--AAATTG-GTTGAATGTAAAATTAAAAGGACATTTAT
* * * * * *
32839119 ATAAGCATTCACATTGGGACAAAATGGGCTGTCATGCAAAACTACCCAACCAAACTGCCTTGTCA
53 ATAAACATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCC-TCCAAACTGCCCTGCCA
* * *
32839184 AAA-TTTGATTGAATAGAAAATTAACAGGATATTTCTATAAGCATTCAATTTG-GCAAGAAATGG
117 AAATTTTG-TTGAAT-GAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAG-ACGAAATGG
* * * * * ** * *
32839247 ATTGTCATGTCGAACTACCCTGCCAAACTACCC-AACAAATATTTGCTTGAGTGCAAAATTAAAA
179 ATTGTTATGTCAAACTA-CCAGCCAAATTGCCCTGCCAAA-ATTTGCTTGAATGCAAAATTAAGA
* * * ** * *
32839311 CG-ACATTTCTATTAGCATTTAAATTGGAACGAAATGGACTGCCATGCCAAACTACT-TTGGCAA
242 -GAACATTTCTATTAGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAACTACTCCT-CCAA
* ** * * * * ** *
32839374 AATTTGATTTAATTCAAAATTAAGACGACATTTCTATAAGTATTCAAATTTGGACGAAATTGACT
305 AATTTGATTGAATGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACT
32839439 GTCAA-
370 -TCAAT
* * * * *
32839444 GCCAAACTGCCCTGCTAAAATTGATTGAATG-ATAAATTAAAAGGACATTTCTATAAGCATTCAA
1 GCCAAACTACCCTGCCAAAATTGGTTGAATGTA-AAATTAAAAGGACATTTATATAAACATTCAA
* * * * * * * *
32839508 TTTGGGACGAAATGGACGGTTATGCCAAACTACCCAGCCAAACTGTCCTGCCAAAATTTGGTTGA
65 ATTGGGACAAAATGGACTGTCATGCAAAACTACCC-TCCAAACTGCCCTGCCAAAATTTTGTTGA
* * * * ** * * * *
32839573 ATGCAAATTTAAGAGAACATTTTTTTAAGCATTCAAATTTG-GTTGAAATAGACTATTAT-ACAA
129 ATG-AAAATTAAGAGGACATTTCTATAAGCATTC-AATTTGAGACGAAATGGATTGTTATGTC-A
* * * * * * ** * *
32839636 AACTACCAAGCTAAATTGCCTTGCCAAAA-TTGATTAAAAGCAAAACTAAGAGGCCATTTATATA
191 AACTACC-AGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGAACATTTCTATT
* * * * * * *
32839700 AGCGTTCAAATTGTGACAAAATCGACTGTCATGGAAAACTACCCAACCAGACTGCCCTGCCAAAA
255 AGCATTCAAATTGGGACGAAATAGACTGT--T-----A-T-GCCAAAC-TACT--CCT-CCAAAA
* * * * * *
32839765 TTTGATTAAATTG-AAAATTGAGAGGACATTTCTATAAGCAAT-AAATTTGCGACAAAATGGATT
307 TTTGATTGAA-TGAAAAATTAAAAGGACATTTCTATAAGCATTCAAA-TTGGGAAAAAATGGA--
32839828 GTCATGCTAAACTACCAT
368 --C-T--T---C-A--AT
* * ** * * * * * * *
32839846 GCCAAAACTACCCTGCTAATATTTTCTTAAATGCAAAATTCAGAGAACATTTCTATTAACATTCA
1 GCC-AAACTACCCTGCCAA-AATTGGTTGAATGTAAAATTAAAAGGACATTTATATAAACATTCA
* * * *
32839911 AATTGGAACGAAATGGAC--T-AT-C---AC-A----CCAAACTACTCTGCC-AAA-TTTGATTG
64 AATTGGGACAAAATGGACTGTCATGCAAAACTACCCTCCAAACTGCCCTGCCAAAATTTTG-TTG
* * * * * * * * * *
32839962 AATGAAAAATTAAGAGAACATTTCTATACGTATTAAAATTGGGATGAAATGGACTGTAATGCCAA
128 AATG-AAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAA
** * * * *
32840027 ACTACCCAGCCAAACCGCCCTGCCAAAATTAGATTGAATGCAAAATTAATA-AGACATTTCTATA
192 ACTA-CCAGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGA-ACATTTCTATT
* * * * * * * * * * *
32840091 AGCATTCAAATTAGGAGGGAATTGATTGTCAGGCCAAACTGC-CTTGCTAAAA-TTCATTGAATG
255 AGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAACTACTCCT-CCAAAATTTGATTGAATG
* * * **
32840154 CAAAATTAAGAGGACATTTCTCTAAGCATTCAAATTGGGACGAAATGGACTATCTTGCCAAACTA
319 AAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGG---A-CTT--C--A--A
32840219 CT
374 -T
* * * * * *** * **
32840221 CATCCAAACTTCCCTACCAAAATTTGGTTGAATGCAAATTTTTGAGGACATTTTTATAATTATTC
1 --GCCAAACTACCCTGCCAAAA-TTGGTTGAATGTAAAATTAAAAGGACATTTATATAAACATTC
* * * * * *
32840286 AAATTGGGACGAAATGAACTGTCATTCCAAACTA-CCTAGCAAACAGCCCTGCCAAAA--TTGAT
63 AAATTGGGACAAAATGGACTGTCATGCAAAACTACCCT-CCAAACTGCCCTGCCAAAATTTTG-T
* * * * * * * * * *
32840348 TGAAAGCAAAAATAAGAGGACGTTTATATAAGCATTCAAATTGCGACAAAATGGCA-TATCATGG
126 TGAATG-AAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGG-ATTGTTATGT
* * * * * * * *
32840412 AAAACTACCTAACCAAACTACTCC-GCCAAAATTTGCTTAAATGGAAAATTAAGAGGACATTTTT
189 CAAACTACC-AGCCAAATTGC-CCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGAACATTTCT
* * * * ** * *
32840476 ATAAGCATTCAATTTGGGACGAAATGGATTGCCATGACAAACTGCCCTGCCAAACTACCCAGCCA
252 ATTAGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAACT--ACT--C---CT--CCA---A
** * ** * * * **
32840541 ATATTTGCCTGAATGCAAAA-TAAAGAAAAAATGTCTATTAGCATTCAAATT-GGAACAAAATAA
305 A-ATTTGATTGAATGAAAAATTAAA-AGGACATTTCTATAAGCATTCAAATTGGGAA-AAAATGG
32840604 ACTGTC-AT
367 ACT-TCAAT
* * * * *
32840612 GCCAAA--A---T-------TTGATTTAATGCAAAATTATAAGGACATTTATATAAGCATTCAAA
1 GCCAAACTACCCTGCCAAAATTGGTTGAATGTAAAATTAAAAGGACATTTATATAAACATTCAAA
** * ** * *
32840665 TTGGGATGAAAT----TGTC-TG-----TTA--AGCCAAACTGCCCTGCTAAAA--GTGATTGAA
66 TTGGGACAAAATGGACTGTCATGCAAAACTACCCTCCAAACTGCCCTGCCAAAATTTTG-TTGAA
* * * * * * * ** *
32840716 TGATAAATTAAGAGGACGTTTATATAAGAATTCAAATTGGGATGAAATGGGTTGCAATGACAAAC
130 TGA-AAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAAAC
* * * * * * * *
32840781 TACCCAGCCAAACTGCCATGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAATC
194 TA-CCAGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGAACATTTCTATTAGC
* * * *
32840846 ATTCAAATTGAGACGAAATGGACTATTATTCCAAACTACCCAGCCAAACTGCTCTGCCAAAA-TT
258 ATTCAAATTGGGACGAAATAGACTGTTATGCCAAACT----------ACT-C-CT-CCAAAATTT
* * * * ** * * *
32840910 GATTGAAAGCAAAAA-TAAGAGGAAATTTATATAAATATTCAAATT-GTAACAAATAGACTGTC-
310 GATTGAATG-AAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACT-TCA
32840972 AT
373 AT
* * * * * * *
32840974 GCAAAACTGCGCTGCCAATATTTGCG-TGAGA-GCAAAATTAAAAGGACATTTTTACT-AGCATT
1 GCCAAACTACCCTGCCAA-AATTG-GTTGA-ATGTAAAATTAAAAGGACATTTATA-TAAACATT
* * * *
32841036 TAAATTGGAACGAAATGGACTGTCATGCCAAACTA--CT------T----TGCCAAAA-TTTGAT
62 CAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCTCCAAACTGCCCTGCCAAAATTTTG-T
* * * * * * * ** * * * *
32841088 TCAATGCAGAATTAATAGGACAATTCTATAAGCATTCAAATTGGGATGAAATTAACTGTCAAGCC
126 TGAATG-AAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTC
** * *
32841153 AAACT---A-CC---TT--AAT---AAAA-TTGATTGAATG-ATAAATTAAGAGGACATTTCTAT
190 AAACTACCAGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCA-AAATTAAGAGAACATTTCTAT
* * * * * *
32841204 AAGCAATCAAATTGCGACGAAATGGACTGTCATGCCAAACTAACCAGCTAAACTGCCCTGCTAAA
254 TAGCATTCAAATTGGGACGAAATAGACTGTTATG-C---C-AA--A-CT--ACT--CCT-CCAAA
* * * * * **
32841269 ATTTTG-TTCAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACT
306 A-TTTGATTGAATGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACT
32841333 GTCAAT
370 -TCAAT
* * * * * * * ** *
32841339 -CTAAACTATCCAGCCAAACTGCCCTGCCAATATTAAT-CAAAAGCAAAAATAAGACATTTATAT
1 GCCAAACTACCCTGCCAAAAT----TG---GT-TGAATGTAAAA--TTAAA-AGGACATTTATAT
** * * * * *
32841402 AAGGATTCAAATTGTGAAAAAATAGACTGTCATGCAAAACTACCCAACCAAACTGCCTTGCCAAA
55 AAACATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCC-TCCAAACTGCCCTGCCAAA
* * * *
32841467 A-TTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATACAATTTGGGATGAAATGGATT
119 ATTTTG-TTGAAT-GAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATT
* * * * *
32841531 GTCATGT----C-A--A-CC----TACCCTGCCAAGATTTTCTTGAATGCAAAATAAAGAGAACA
182 GTTATGTCAAACTACCAGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGAACA
* * *
32841584 TTTCTATTAGCATTCAAATTGGAACGAAATGGACT-TTCATGCCAAACTACT-CTGCCAATATTT
247 TTTCTATTAGCATTCAAATTGGGACGAAATAGACTGTT-ATGCCAAACTACTCCT-CCAAAATTT
* * * * **
32841647 GATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAGATTGGGACGAAATGGACTGTAAT
310 GATTGAATGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGAC--T--T
*
32841712 GGAAAACT
371 ---CAA-T
** * * ** * * * *
32841720 ACCCAGCCAAACCGCCCTGCCAAAATATGAATT-AATG-CACTTTAAGAGAACATTTTTATAAGC
1 -----GCCAAACTACCCTGCCAAAAT-TG-GTTGAATGTAAAATTAAAAGGACATTTATATAAAC
** * * * * *
32841783 ATTCAAATTGGGATGAAATGGACTATAATGAAAAACTACCCAGCCAAACTGCCATGCCAAAA--T
59 ATTCAAATTGGGACAAAATGGACTGTCATGCAAAACTACCC-TCCAAACTGCCCTGCCAAAATTT
* * * * * * * * *
32841846 TGATTGAATGCAAAAAT-AGAAGAATATTTATATAAGCTTTCAAATTGAGACAAAATGGGTTGTC
123 TG-TTGAATG-AAAATTAAG-AGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTT
* * ** * * * *
32841910 ATG-CAAAACTACCCAACCAAACTGCCCTATCAAAATTTGATTGAATGTAAAATTATGAGGACAT
185 ATGTC-AAACTA-CCAGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGAACAT
* * * * *
32841974 TTCTATAAGCATTCAATTTGGGAAGAAATGGACTATCATGTCAAACTACCTTGCCAAACTTC-CC
248 TTCTATTAGCATTCAAATTGGGACGAAAT--A-GA-C-TGT-----TA---TGCCAAACTACTCC
* * * * * * * * *
32842038 TGCCAATATTTGCTTGAGTGCAAAATTAAGAGGACTTTTCCATTAA-CATTTAAATT-GGAACGA
300 T-CCAAAATTTGATTGAATGAAAAATTAAAAGGACATTTCTA-TAAGCATTCAAATTGGGAA-AA
*
32842101 AATAGACTATC-AT
362 AATGGACT-TCAAT
* * * * * *
32842114 GCCAAACTACTCTGCCAAAATTTGATTTAATGCAAAATTAAGAA-GACATTTCTATAAGCATTCA
1 GCCAAACTACCCTGCCAAAA-TTGGTTGAATGTAAAATTAA-AAGGACATTTATATAAACATTCA
* * * * * *
32842178 AATTGGGATGAAACT-GACTGACAAGCCAAACCA-CCT------TG--CT---AAAA--TTGATT
64 AATTGGGA-CAAAATGGACTGTCATGCAAAACTACCCTCCAAACTGCCCTGCCAAAATTTTG-TT
* ** * * * * * * * *
32842228 GATTGATAAATTAAGATAACATTTTTACAAGCATTCAAATTGGGACAAAATGGACTGTAATGCCA
127 GAATGA-AAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCA
* * * * * * * * *
32842293 AACAACCTAGTCTAATTGCCCTGCCAATATTTGCTTGAGTGTAAAATTAAAAAAGGACATTTTTA
191 AACTACC-AGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATT--AAGAGAACATTTCTA
* * * * * * * *
32842358 TTAGCATTTAAATTGGAATGAAATGGACTATCATGCCAAACTACT-CTGGCAAAATTTGATTTAA
253 TTAGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAACTACTCCT-CCAAAATTTGATTGAA
* * * * *
32842422 TGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATTGTCTGTCAA-
317 TGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACT-TCAAT
* * * * * * *
32842480 GCCAAACTGCCTTG-CTAAA----TTGAATG-ATAAATTAAGAGGACATTTCTACAAGCATTCAA
1 GCCAAACTACCCTGCCAAAATTGGTTGAATGTA-AAATTAAAAGGACATTTATATAAACATTCAA
** * * ** * *
32842539 ATTGGGATGAAATGGGCTGTCATGCCAAACTACCAAGCCAAACAGCCCTGCCAAAATTTTGTTCA
65 ATTGGGACAAAATGGACTGTCATGCAAAACTACC-CTCCAAACTGCCCTGCCAAAATTTTGTTGA
* *
32842604 AT-ACGAATTTAAGAGGACATTTTTATAAGCATTCAA
129 ATGA--AAATTAAGAGGACATTTCTATAAGCATTCAA
32842640 ATTAGGACAA
Statistics
Matches: 4212, Mismatches: 874, Indels: 853
0.71 0.15 0.14
Matches are distributed among these distances:
359 5 0.00
360 54 0.01
361 2 0.00
362 91 0.02
363 71 0.02
364 191 0.05
365 13 0.00
366 80 0.02
367 9 0.00
368 5 0.00
369 4 0.00
370 10 0.00
371 8 0.00
372 13 0.00
373 54 0.01
374 96 0.02
375 74 0.02
376 366 0.09
377 696 0.17
378 520 0.12
379 132 0.03
380 20 0.00
381 11 0.00
382 28 0.01
383 6 0.00
384 12 0.00
385 14 0.00
386 79 0.02
387 79 0.02
388 201 0.05
389 180 0.04
390 347 0.08
391 126 0.03
392 6 0.00
393 5 0.00
394 8 0.00
395 6 0.00
396 4 0.00
397 6 0.00
398 5 0.00
399 12 0.00
400 8 0.00
401 36 0.01
402 257 0.06
403 145 0.03
404 111 0.03
405 4 0.00
408 2 0.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (374 bp):
GCCAAACTACCCTGCCAAAATTGGTTGAATGTAAAATTAAAAGGACATTTATATAAACATTCAAA
TTGGGACAAAATGGACTGTCATGCAAAACTACCCTCCAAACTGCCCTGCCAAAATTTTGTTGAAT
GAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTATGTCAAACTA
CCAGCCAAATTGCCCTGCCAAAATTTGCTTGAATGCAAAATTAAGAGAACATTTCTATTAGCATT
CAAATTGGGACGAAATAGACTGTTATGCCAAACTACTCCTCCAAAATTTGATTGAATGAAAAATT
AAAAGGACATTTCTATAAGCATTCAAATTGGGAAAAAATGGACTTCAAT
Found at i:32838072 original size:88 final size:87
Alignment explanation
Indices: 32837910--32838184 Score: 281
Period size: 88 Copynumber: 3.1 Consensus size: 87
32837900 CAAACTACCC
* * * * *
32837910 TGCCAAACTACCCTA-TTAATATTTGCTTGAATGCAAAGTTAA-AAGGACATTTCTATTAGAATT
1 TGCCAAACTA-CCTACTTAA-ATTTGATTGAATACAAAATTAAGAA-GACAATTCTATAAGAATT
* * *
32837973 TAAATTGGGACGAAATGGACTCTCA
63 CAAATTGGGACGAAATTGACTGTCA
* *
32837998 TGCCAAACTACTCTACTTAAATTTGATTTAATACAAAATTAAGAAGACAATTCTATAAGTATTCA
1 TGCCAAACTAC-CTACTTAAATTTGATTGAATACAAAATTAAGAAGACAATTCTATAAGAATTCA
*
32838063 AATTGGGACGAAATTGATTGTCA
65 AATTGGGACGAAATTGACTGTCA
* * * * * * * *
32838086 AGCCAAACTGCCTTGC-TAAAATTAATTGAATGA-TAAATTAAG-AGAAAATTTCTATAAGCATT
1 TGCCAAACTACC-TACTTAAATTTGATTGAAT-ACAAAATTAAGAAGACAA-TTCTATAAGAATT
32838148 CAAATTGGGACGAAATTGACTGTCA
63 CAAATTGGGACGAAATTGACTGTCA
32838173 TGCCAAACTACC
1 TGCCAAACTACC
32838185 AAGCCAAACT
Statistics
Matches: 158, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
86 5 0.03
87 68 0.43
88 79 0.50
89 6 0.04
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.31
Consensus pattern (87 bp):
TGCCAAACTACCTACTTAAATTTGATTGAATACAAAATTAAGAAGACAATTCTATAAGAATTCAA
ATTGGGACGAAATTGACTGTCA
Found at i:32838258 original size:101 final size:101
Alignment explanation
Indices: 32838084--32839365 Score: 1118
Period size: 101 Copynumber: 13.0 Consensus size: 101
32838074 AATTGATTGT
* * * * *
32838084 CAAGCCAAACTGCCTTGCTAAAA-TTAATTGAATG-ATAAATTAAGAGAAAATTTCTATAAGCAT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCAT
*
32838147 TCAAATTGGGACGAAATTGACTGTCATGCCAAACTAC
65 TCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * * *
32838184 CAAGCCAAACTGCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGGATATTTTTATAAGCATT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * *
32838249 CAAATTGGGACAAAATTGACTGTCATGCGAAACTAC
66 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * *
32838285 CCAGTCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
*
32838350 CAAATTGGGACGAAATTGACTGTCATGCCAAACTAC
66 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * * * *
32838386 CAAGCCAAACTGCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGGAAATTTTTATAAGTATT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * *
32838451 CATATTGGAATGAAATGGACTGT-ATGCCAAACTAC
66 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * *
32838486 CTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATGAGTAAT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * * * *
32838551 CAATTTGGAACGAAATGGATTGTCATGTCAATA-TTC
66 CAAATTGGGACGAAATGGACTGTCATGCCAA-ACTAC
* * * * * * * * *
32838587 TCTAG-GAAACTGCCCTGCCAATATTTGCTTCAATACAAAATTAAGAGCACATTTCTATTAGTAT
1 -CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCAT
32838651 TCAAATTGGGACGGAAA-GGACTGTCATGCCAAA-T--
65 TCAAATTGGGAC-GAAATGGACTGTCATGCCAAACTAC
* * *
32838685 -------TACT---CTGCCAAAATTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * *
32838740 TAAAATGGGACGAAAT----TG--AT-----AGT--
66 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * **
32838763 CAAGCCAAACTGCTCTGCTAAAA-TTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCATT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * *
32838827 CAAATTGAGG-CGAAATGGACTATCTTGCCAAAATACC
66 CAAATTG-GGACGAAATGGACTGTCATGCCAAACTA-C
* * * * * *
32838864 CAA-CCAAACTGTCCTGCCAAAATTTTATTGACTGCAAATTTAAGAGGACATTTTTATAAGAATT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* * * * *
32838928 TATATTGAGATGAAATGGACTGTCATGCCAAACTAA
66 CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* ** * * *
32838964 CAAGCCAAATTGCCCTGCCAAAATTTGATTGAATGC-ACTTTAATATGACACTTT-TATAGGCAT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACA-TTTCTATAAGCAT
* * *
32839027 TCAAATTAGGATGAAATAGACTGTCATGCCAAACTAC
65 TCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
* * * * ** **
32839064 CCAGCCAAACTGCGCTACCAAAA--TGAATTGAATGCAAAAATAATTGGGTATTTCTATAAGCAT
1 CAAGCCAAACTGCCCTGCCAAAATTTG-ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCAT
* * * *
32839127 TCACATTGGGACAAAATGGGCTGTCATGCAAAACTACC
65 TCAAATTGGGACGAAATGGACTGTCATGCCAAACTA-C
* * * *
32839165 CAA-CCAAACTGCCTTGTCAAAATTTGATTGAATAG-AAAATTAACAGGATATTTCTATAAGCAT
1 CAAGCCAAACTGCCCTGCCAAAATTTGATTGAAT-GCAAAATTAAGAGGACATTTCTATAAGCAT
* * * * * *
32839228 TCAATTTGGCAAGAAATGGATTGTCATGTCGAACTAC
65 TCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
** * ** * * * * *
32839265 CCTGCCAAACTACCC-AACAAATATTTGCTTGAGTGCAAAATTAAAACGACATTTCTATTAGCAT
1 CAAGCCAAACTGCCCTGCCAAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCAT
* * *
32839329 TTAAATTGGAACGAAATGGACTGCCATGCCAAACTAC
65 TCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
32839366 TTTGGCAAAA
Statistics
Matches: 958, Mismatches: 177, Indels: 93
0.78 0.14 0.08
Matches are distributed among these distances:
77 1 0.00
78 1 0.00
82 2 0.00
84 2 0.00
85 3 0.00
87 52 0.05
88 64 0.07
91 4 0.00
93 1 0.00
98 4 0.00
99 12 0.01
100 264 0.28
101 535 0.56
102 13 0.01
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (101 bp):
CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
CAAATTGGGACGAAATGGACTGTCATGCCAAACTAC
Found at i:32838802 original size:679 final size:678
Alignment explanation
Indices: 32834983--32845154 Score: 4774
Period size: 679 Copynumber: 15.2 Consensus size: 678
32834973 ATTTCAATAA
* * * * * *
32834983 GCCAAGCTACCTAGCCAAACTGTCCTGCTAATATTTTG-TTGAATGCAAATTTAAGAGGACATTT
1 GCCAAACTACCAAGCCAAACTGCCCTGCCAA-AATTTGATTGAATGCAAAATTAAGAGGACATTT
* *
32835047 TTATAAGCATTCAAATTGGAACAAAATGGACTATCATGCAAAACTAACC-AGCCAAACTGCCCTG
65 CTATAAGCATTCAAATTGGAACAAAATGGACTGT-ATGCAAAACT-ACCTAGCCAAACTGCCCTG
* * * * *
32835111 CCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATGAGTAATCAATTTGGAATGAAATG
128 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGAACGAAATG
* * * * *
32835176 GATTGTCATGTCAAACTTCCCTGACAAACTGCCTTGCCAATATTTGCTTCAATGCAAAATTAAGA
193 GATTGTCATGTCAAACTACCCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAGA
* * * *
32835241 GCACATTTATATTAGCATTCAAATTGGAACGAAATGGAC--T-AT--C--ACTACTCTACCAAAA
258 GCACATTTCTATTAGTATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGCCAAAA
*
32835299 TTTGATTTAATGA-AAAATTAAGAGGACATTTCTATAAACATTTC-AAATGGGACGAAATTGATA
323 TTTGATTTAAT-ACAAAATTAAGAGGACATTTCTATAAGCA-TTCAAAATGGGACGAAATTGATA
*
32835362 GTCAAGCCAAACTGCCCTGCTAAACTTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCAT
386 GTCAAGCCAAACTGCCCTGCTAAAATTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCAT
* * * ** *
32835427 TCAAATTGAGACGAAATGAACTGTCTTGTTAAACTACCCAA-CCAAACTGCCCTGCCAAAATTTT
451 TCAAATTGGGACGAAATGGACTGTCATGCCAAACTA-CCAAGCCAAACTGCCCTGCCAAAATTTG
* * * * *
32835491 GTTGAATGAAAATTTAAGAGGGCATTTTTATAAGCATTTAAATTGAGACGAAATAGACTGTCATG
515 GTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* * ** * *
32835556 CCAAACTACCTAGCCAAATTGCCCTGCCAAAATTTGATTGAATGC-ACTTTAAGAGGACATTTTT
580 CCAAACTACCCAGCCAAACTGCCCTGCC-AAATTTGATTGAATGCAAAATTAAGAAGACATTTAT
* * * *
32835620 ATAGGCATTCAAATTGGAATGAAATGGACTATCAT
644 ATAAGCATTCAAATTGGGACGAAATGGACTGTCAT
* * * * * * * **
32835655 GCCAAACTACCCAGCAAAACTGCGCTACCAAAA-TTAATTGAATGCAAAAATAATAGGGTATTTC
1 GCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTC
* * * * * * * *
32835719 TATAAGCATTCAAATTGGGACAAAATGGGC--CATGCAAAACTACCCAACCAAACTACCTTGTCA
66 TATAAGCATTCAAATTGGAACAAAATGGACTGTATGCAAAACTACCTAGCCAAACTGCCCTGCCA
* *
32835782 AAATTTGATTGAATGCAAAATTAACAGGACATTTCTATAAGTATTCAATTTGGCAA-GAAATGGA
131 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGG-AACGAAATGGA
* * * * * *
32835846 CTGTCATGTCAAACTACCCTGCCAAATTGCCCTTCAAATATTTGCTTGAGTGCAAAATTAAGATG
195 TTGTCATGTCAAACTACCCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAGA-G
* * * * *
32835911 -ACATTTTTATTAGCT-TTTAAATTAGAACGATATGGACTGTCATGCCAAACTACTCTGCCAAAA
259 CACATTTCTATTAG-TATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGCCAAAA
* * * * *
32835974 TTTGATTTAATGCAAAATTAAGAGAACATTTCTATAAGTATTC-AAATGTGAACTAAATTGA-AT
323 TTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAAATG-GGACGAAATTGATA-
* * *
32836037 GTTAAGCCAAACTGCCCTGCTAAAATTGATTGAATAATAAATTAAGAGCACATTTCTATAAGCAT
386 GTCAAGCCAAACTGCCCTGCTAAAATTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCAT
** * ***
32836102 TCAAATTGGGAAAAAATGGAC-GATCATGCCAAACTACCCAGCCAAACTGTAATGCCAAAATTTG
451 TCAAATTGGGACGAAATGGACTG-TCATGCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTG
* *
32836166 GTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGATGAAATGGATTGTCATG
515 GTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* * * * * * * *
32836231 CAAAACTTCCTAGCCAAACTGCCTTGCCAAAATTGATTCAAAGCAAAATTAAGAAGAGATTTATA
580 CCAAACTACCCAGCCAAACTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAAGACATTTATA
* * * *
32836296 TAAACATTCAAATTGTGACAAAATGGACAGTCAT
645 TAAGCATTCAAATTGGGACGAAATGGACTGTCAT
* * * *
32836330 GCAAAACTACCCAA-CAAAACTACCCAG-CATTAAATTTGGGA-TGAAATGGATTCTCACGACAA
1 GCCAAACTA-CCAAGCCAAACTGCCCTGCCA--AAATTT--GATTG-AAT-G-------C-A-AA
*** ** * * * * * * **
32836392 ACTTCCCTACCAATATTTTCT-TGAATGCAAATT-TAA-TAGAACAATCCTATTAGCATTCAAAT
50 A-TT-AAGA-GGACA-TTTCTAT-AA-GC--ATTCAAATTGGAACAA----AAT-GGACT-GTA-
** ** ** **
32836454 TGGGACAAAA-TGAATTGTTATTTCAAACCACTTTG-CAACAATTTTG-TTGAATG-AATAATTA
100 T--G-CAAAACT--A--CCTA-GCCAAACTGCCCTGCCAA-AA-TTTGATTGAATGCAA-AATTA
* ** * * ** * * *
32836515 AGAGAACATTTCGGTAAGCATTAAAATTGGGGCGAAATGGACTGTCAT-TCCAAACTACTCTGAC
154 AGAGGACATTTCTATAAGCATTCAATTTGGAACGAAATGGATTGTCATGT-CAAACTACCCTGCC
* * *
32836579 AAAATA---TG-----A--T--TT-AATGC---------A--ACATTTCTATAAGCATTCAAATT
218 AAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAGAGCACATTTCTATTAGTATTCAAATT
* * * * *
32836620 GAGACAAAATGGACTGTCATGCCAAACTACCCAGCC-AAATTACCCTGCAATATTTGGTTGAATG
283 GGGACGAAATGGACTGTCATGCCAAACTACTCTGCCAAAATT----TG----A--T--TT-AATA
* * * * ** *
32836684 CAAATTTAAGAGGACATTTTTATAAGAATT-TAAATGGGATAAAATAGTCTGTCATTCCAAACTA
335 CAAAATTAAGAGGACATTTCTATAAGCATTCAAAATGGGA-CGAA-A-T-TG--A-T----AGT-
* * * * * * *
32836748 CCCAGCCAAATTGCCCTACCAAAATTGATTGAAAG-TAAAAATAAGAGGACATTTATATCAA-CA
388 -CAAGCCAAACTGCCCTGCTAAAATTGATTGAATGAT-AAATTAAGAGGACATTTCTAT-AAGCA
* * * * *
32836811 TTCAAATTGCGACAAAATGGACTATCATGCAAAACTACCCTA-CCAAACTGCCCTGCCAAAATTT
450 TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTA-CCAAGCCAAACTGCCCTGCCAAAATTT
** * * * * * * * * *
32836875 AATTAAATGGAAAATTAAGAGGGCATTTCTATAAGCATTCAATTTGAGACGAAATGGATTGTTAT
514 GGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCAT
* * * * * ** * *
32836940 GTCATACTGCCCTA-ACAAATTGCCCTGCCAATATTTTCTTGAATGCAAAATAAAGAAAACATTT
579 GCCAAACTACCC-AGCCAAACTGCCCTGCCAA-ATTTGATTGAATGCAAAATTAAGAAGACATTT
* * *
32837004 CTATTAA-CATTCAAATTGGAACGAAATGGACTGTTAT
642 ATA-TAAGCATTCAAATTGGGACGAAATGGACTGTCAT
* * * *
32837041 GTC--A-T----A--C-TA-T-TCCT-CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTC
1 GCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTC
* *
32837093 TATAAGCATTCAAATTGGGAA-AAAATGGACT-T-T-----A--A--T-GCCAAGCTACCCTGCC
66 TATAAGCATTCAAATT-GGAACAAAATGGACTGTATGCAAAACTACCTAGCCAAACTGCCCTGCC
* * * * * * * *
32837145 AATATTTGGTTGAATGCAAATTTAAAAGGACATTTTTATAAGCATTCAAATTGGGACAAAATGGA
130 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGAACGAAATGGA
* ** * *
32837210 TAGTCATG-CAAAACTACCCAACCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAG
195 TTGTCATGTC-AAACTACCCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAGAG
* * * * * *
32837274 GACATTTCTATAAGTATTCAATTTGAGACGAAATGGATTGTCATGTCAAACTAGCCTGCCAAATT
259 CACATTTCTATTAGTATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTA------C----T
* * * * * *
32837339 GCCCTGCCAACATTTGCTTGAACT-CAAAATTAAGAGAACATTTCTATTAGCATTCAAATTGGGA
314 ---CTGCCAAAATTTGATTTAA-TACAAAATTAAGAGGACATTTCTATAAGCATTCAAAATGGGA
* * * * * * * * * * *
32837403 CGAAATAGACT-GTTATGCCAAATTACTCTACCAAAAATTTGATTTAATGAAAAATTAAAAGGAC
375 CGAAATTGA-TAGTCAAGCCAAACTGCCCT-GCTAAAA-TTGATTGAATGATAAATTAAGAGGAC
* * *
32837467 ATTTCTATAAGCATTCAAATTGGGAAG-AA---A---T--TG----ACTATCAAGCCAAACTGTC
437 ATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCC
* * * * * *
32837519 TTGCTAAAA-TTGGTTGAATGTTAAA-TTAATAGGACATTTCTATAAACATTCAAATTGGGACGA
502 CTGCCAAAATTTGGTTGAATG-CAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGA
* * * * *
32837582 AAAGGACTGTCAAGTCAAACTACTCC-TCCAAACTGCACTGCCAAAATTTTG-TTGAATG-ATAA
566 AATGGACTGTCATGCCAAACTAC-CCAGCCAAACTGCCCTGCC-AAA-TTTGATTGAATGCA-AA
* * * *
32837644 ATTAA-AAGGACATTTCTATAAGCATTCAAATTGAGACGAAAAGGACTGTTAT
627 ATTAAGAA-GACATTTATATAAGCATTCAAATTGGGACGAAATGGACTGTCAT
** * *
32837696 GCCAAACTACTC-AGCCAAACTGCTTTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTT
1 GCCAAACTAC-CAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTT
* * * * *
32837760 TTATAAGCATTCAAATTGGGACAAAATTGACTGTCATGCGAAACTACCCAGCCAAACTGCCCTGC
65 CTATAAGCATTCAAATTGGAACAAAATGGACTGT-ATGCAAAACTACCTAGCCAAACTGCCCTGC
* * * * * * *
32837825 CCAAATTTGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCAATTTCGTACAAAATGT
129 CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGAACGAAATGG
* * *** * *
32837890 ACTATCATGTCAAACTACCCTGCCAAACTACCCTATTAATATTTGCTTGAATGCAAAGTTAAAAG
194 ATTGTCATGTCAAACTACCCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAGAG
* * * * * **
32837955 GACATTTCTATTAGAATTTAAATTGGGACGAAATGGACTCTCATGCCAAACTACTCTACTTAAAT
259 CACATTTCTATTAGTATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGCCAAAAT
* * * * *
32838020 TTGATTTAATACAAAATTAAGAAGACAATTCTATAAGTATTCAAATTGGGACGAAATTGATTGTC
324 TTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAAATGGGACGAAATTGATAGTC
* * * *
32838085 AAGCCAAACTGCCTTGCTAAAATTAATTGAATGATAAATTAAGAGAAAATTTCTATAAGCATTCA
389 AAGCCAAACTGCCCTGCTAAAATTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
32838150 AATTGGGACGAAATTGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCTAATATTTGGTTG
454 AATTGGGACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGGTTG
* * * *
32838215 AATGCAAATTTAAGAGGATATTTTTATAAGCATTCAAATTGGGACAAAATTGACTGTCATGCGAA
519 AATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAA
* * *
32838280 ACTACCCAGTCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAATAAGACATTTCTATAA
584 ACTACCCAGCCAAACTGCCCTG-CCAAATTTGATTGAATGCAAAATTAAGAAGACATTTATATAA
*
32838345 GCATTCAAATTGGGACGAAATTGACTGTCAT
648 GCATTCAAATTGGGACGAAATGGACTGTCAT
* * * * * *
32838376 GCCAAACTACCAAGCCAAACTGCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGGAAATTTT
1 GCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTC
* * ** *
32838441 TATAAGTATTCATATTGGAATGAAATGGACTGTATGCCAAACTACCTAGCCAAACTGCCCTGCCA
66 TATAAGCATTCAAATTGGAACAAAATGGACTGTATGCAAAACTACCTAGCCAAACTGCCCTGCCA
* * *
32838506 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATGAGTAATCAATTTGGAACGAAATGGAT
131 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGAACGAAATGGAT
* * * * * *
32838571 TGTCATGTCAATA-TTCTCTAG-GAAACTGCCCTGCCAATATTTGCTTCAATACAAAATTAAGAG
196 TGTCATGTCAA-ACTACCCT-GCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAGAG
*
32838634 CACATTTCTATTAGTATTCAAATTGGGACGGAAA-GGACTGTCATGCCAAATTACTCTGCCAAAA
259 CACATTTCTATTAGTATTCAAATTGGGAC-GAAATGGACTGTCATGCCAAACTACTCTGCCAAAA
*
32838698 TTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTTAAAATGGGACGAAATTGATAGT
323 TTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAAATGGGACGAAATTGATAGT
*
32838763 CAAGCCAAACTGCTCTGCTAAAATTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCATTC
388 CAAGCCAAACTGCCCTGCTAAAATTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCATTC
* * * * **
32838828 AAATTGAGG-CGAAATGGACTATCTTGCCAAAATACCCAA-CCAAACTGTCCTGCCAAAATTTTA
453 AAATTG-GGACGAAATGGACTGTCATGCCAAACTA-CCAAGCCAAACTGCCCTGCCAAAATTTGG
* * * * * *
32838891 TTGACTGCAAATTTAAGAGGACATTTTTATAAGAATTTATATTGAGATGAAATGGACTGTCATGC
516 TTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * ** * *
32838956 CAAACTAACAAGCCAAATTGCCCTGCCAAAATTTGATTGAATGC-ACTTTAATATGACACTTT-T
581 CAAACTACCCAGCCAAACTGCCCTGCC-AAATTTGATTGAATGCAAAATTAAGAAGACA-TTTAT
* * * *
32839019 ATAGGCATTCAAATTAGGATGAAATAGACTGTCAT
644 ATAAGCATTCAAATTGGGACGAAATGGACTGTCAT
* * * * ** **
32839054 GCCAAACTACCCAGCCAAACTGCGCTACCAAAA--TGAATTGAATGCAAAAATAATTGGGTATTT
1 GCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTG-ATTGAATGCAAAATTAAGAGGACATTT
* * * * * * *
32839117 CTATAAGCATTCACATTGGGACAAAATGGGCTGTCATGCAAAACTACCCAACCAAACTGCCTTGT
65 CTATAAGCATTCAAATTGGAACAAAATGGACTGT-ATGCAAAACTACCTAGCCAAACTGCCCTGC
* *
32839182 CAAAATTTGATTGAATAG-AAAATTAACAGGATATTTCTATAAGCATTCAATTTGGCAA-GAAAT
129 CAAAATTTGATTGAAT-GCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGG-AACGAAAT
* ** * *
32839245 GGATTGTCATGTCGAACTACCCTGCCAAACTACCCAACAAATATTTGCTTGAGTGCAAAATTAA-
192 GGATTGTCATGTCAAACTACCCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAG
* * * * * * *
32839309 AACGACATTTCTATTAGCATTTAAATTGGAACGAAATGGACTGCCATGCCAAACTACTTTGGCAA
257 AGC-ACATTTCTATTAGTATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGCCAA
* * * * *
32839374 AATTTGATTTAATTCAAAATTAAGACGACATTTCTATAAGTATTCAAATTTGGACGAAATTGACT
321 AATTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAAATGGGACGAAATTGA-T
*
32839439 -GTCAAGCCAAACTGCCCTGCTAAAATTGATTGAATGATAAATTAAAAGGACATTTCTATAAGCA
385 AGTCAAGCCAAACTGCCCTGCTAAAATTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCA
* * * * *
32839503 TTCAATTTGGGACGAAATGGACGGTTATGCCAAACTACCCAGCCAAACTGTCCTGCCAAAATTTG
450 TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTG
* * * ** * * * *
32839568 GTTGAATGCAAATTTAAGAGAACATTTTTTTAAGCATTCAAATTTGGTTGAAATAGACTATTATA
515 GTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* * * * * * * * * * *
32839633 CAAAACTACCAAGCTAAATTGCCTTGCCAAAATTGATTAAAAGCAAAACTAAGAGGCCATTTATA
580 CCAAACTACCCAGCCAAACTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAAGACATTTATA
* * * *
32839698 TAAGCGTTCAAATTGTGACAAAATCGACTGTCAT
645 TAAGCATTCAAATTGGGACGAAATGGACTGTCAT
** * * *
32839732 GGAAAACTACCCAA-CCAGACTGCCCTGCCAAAATTTGATTAAATTG-AAAATTGAGAGGACATT
1 GCCAAACTA-CCAAGCCAAACTGCCCTGCCAAAATTTGATTGAA-TGCAAAATTAAGAGGACATT
* * * *
32839795 TCTATAAGCAAT-AAATTTGCG-ACAAAATGGATTGTCATGCTAAACTACC-ATGCCAAAACTAC
64 TCTATAAGCATTCAAA-TTG-GAACAAAATGGACTGT-ATGCAAAACTACCTA-GCC-AAACTGC
* * ** * * * *
32839857 CCTGCTAATATTTTCTTAAATGCAAAATTCAGAGAACATTTCTATTAA-CATTCAAATTGGAACG
124 CCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCATTCAATTTGGAACG
* * * *
32839921 AAATGGA----C-TATC--AC-A-----CCAAACTACTCTGCCAA-ATTTGATTGAATGAAAAAT
188 AAATGGATTGTCATGTCAAACTACCCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAAT
* * * *
32839972 TAAGAGAACATTTCTA-TACGTATTAAAATTGGGATGAAATGGACTGTAATGCCAAACTACCCAG
253 TAAGAGCACATTTCTATTA-GTATTCAAATTGGGACGAAATGGACTGTCATGCCAAACT------
* * * * * *
32840036 CCAAACCGCCCTGCCAAAATTAGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCAAA
311 ----A---CTCTGCCAAAATTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* * * * * * * *
32840101 TTAGGAGGGAATTGATTGTCAGGCCAAACTGCCTTGCTAAAATTCATTGAATGCA-AAATTAAGA
369 ATGGGACGAAATTGATAGTCAAGCCAAACTGCCCTGCTAAAATTGATTGAATG-ATAAATTAAGA
* * * *
32840165 GGACATTTCTCTAAGCATTCAAATTGGGACGAAATGGACTATCTTGCCAAACTACTC-ATCCAAA
433 GGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTAC-CAAGCCAAA
* * ** **
32840229 CTTCCCTACCAAAATTTGGTTGAATGCAAATTTTTGAGGACATTTTTATAATTATTCAAATTGGG
497 CTGCCCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGG
* * * * * *
32840294 ACGAAATGAACTGTCATTCCAAACTACCTAG-CAAACAGCCCTGCCAAAATTGATTGAAAGCAAA
562 ACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAATTTGATTGAATGCAAA
* * * * * *
32840358 AATAAGAGGACGTTTATATAAGCATTCAAATTGCGACAAAATGG-CATATCAT
627 ATTAAGAAGACATTTATATAAGCATTCAAATTGGGACGAAATGGAC-TGTCAT
** * * * *
32840410 GGAAAACTACCTAA-CCAAACTACTCC-GCCAAAATTTGCTTAAATGGAAAATTAAGAGGACATT
1 GCCAAACTACC-AAGCCAAACTGC-CCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATT
* * * * * * * *
32840473 TTTATAAGCATTCAATTTGGGACGAAATGGATTGCCATG-ACAAACTGCCCT-GCCAAACTACCC
64 TCTATAAGCATTCAAATTGGAACAAAATGGACTG-TATGCA-AAACT-ACCTAGCCAAACTGCCC
* * ** * ** * * * *
32840536 AGCCAATATTTGCCTGAATGCAAAATAAAGAAAAAATGTCTATTAGCATTCAAATTGGAAC--AA
126 TGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGAACGAAA
* * * *
32840599 ---A-----A--T--AA--A--CTG------T--CATGCCAAAATTTGATTTAATGCAAAATTAT
191 TGGATTGTCATGTCAAACTACCCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTA-
* * * * * * * * * * * *
32840640 A-AGGACATTTATATAAGCATTCAAATTGGGATGAAATTGTCTGTTAAGCCAAACTGCCCTGCTA
255 AGAGCACATTTCTATTAGTATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGCCA
* * * * * * * *
32840704 AAA-GTGATTGAATGA-TAAATTAAGAGGACGTTTATATAAGAATTCAAATTGGGATGAAATGGG
320 AAATTTGATTTAAT-ACAAAATTAAGAGGACATTTCTATAAGCATTCAAAATGGGACGAAA----
* * * * * *
32840767 TTGCAATGACAAACTACCCAGCCAAACTGCCATGCCAAAATTTGGTTGAATGCA-AATTTAAGAG
380 TTG--AT-----AGT--CAAGCCAAACTGCCCTGCTAAAA-TTGATTGAATG-ATAAATTAAGAG
* * * * * * *
32840831 GACATTTTTATAATCATTCAAATTGAGACGAAATGGACTATTATTCCAAACTACCCAGCCAAACT
434 GACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACT
* * * ** * * ** **
32840896 GCTCTGCCAAAA-TTGATTGAAAGCAAAAATAAGAGGAAATTTATATAAATATTCAAATTGTAAC
499 GCCCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* * **
32840960 -AAATAGACTGTCATG----------CA---AAACTGCGCTGCCAATATTTGCGTGAGA-GCAAA
564 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAA-ATTTGATTGA-ATGCAAA
* * *
32841010 ATTAA-AAGGACATTTTTACT-AGCATTTAAATTGGAACGAAATGGACTGTCAT
627 ATTAAGAA-GACATTTATA-TAAGCATTCAAATTGGGACGAAATGGACTGTCAT
* * * * *
32841062 GCCAAACT----------ACT---TTGCCAAAATTTGATTCAATGCAGAATTAATAGGACAATTC
1 GCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTC
* ** ** * * *
32841114 TATAAGCATTCAAATTGGGATGAAATTAACTGTCAAGCCAAACTACCT----TAA------T---
66 TATAAGCATTCAAATTGGAACAAAATGGACTGT-ATGCAAAACTACCTAGCCAAACTGCCCTGCC
* *
32841166 AAAA-TTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCAATCAAATTGCG-ACGAAATG
130 AAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATTCAATTTG-GAACGAAATG
* * * * * * * * * *
32841228 GACTGTCATGCCAAACTAACCAGCTAAACTGCCCTGCTAAAATTTTG-TTCAATGCAAATTTAAG
193 GATTGTCATGTCAAACTACCCTGCCAAACTACCCTGCCAATA-TTTGCTTGAATGCAAAATTAAG
* * * * * *
32841292 AGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCAAT-CTAAACTA-TCCAGCCA
257 AGCACATTTCTATTAGTATTCAAATTGGGACGAAATGGACTGTC-ATGCCAAACTACT-CTGCCA
* * ** * * * * * *
32841355 AACTGCCCTGCCAATATTAAT-CAAAAGCAAAAATAAGACATTTATATAAGGATTCAAATTGTGA
320 AAAT---TTG---AT-TTAATAC-AAA--ATTAAGAGGACATTTCTATAAGCATTCAAAATGGGA
** * * * *
32841419 AAAAATAGACTGTCATGCAAAACTACCCAA-CCAAACTGCCTTGCCAAAATTTGATTAAATGGA-
375 CGAAAT----TG--AT-----AGT---CAAGCCAAACTGCCCTGCTAAAA-TTGATTGAAT-GAT
* * * *
32841482 AAATTAAGAGGACATTTCTATAAGCATACAATTTGGGATGAAATGGATTGTCATG------T--C
424 AAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACC
* * ** * * * * *
32841539 AA--C---CTACCCTGCCAAGATTTTCTTGAATGCAAAATAAAGAGAACATTTCTATTAGCATTC
489 AAGCCAAACTGCCCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTC
* *
32841599 AAATTGGAACGAAATGGACTTTCATGCCAAACT----------ACT---CTGCCAATATTTGATT
554 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAA-ATTTGATT
* * * * * *
32841651 GAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAGATTGGGACGAAATGGACTGTAAT
618 GAATGCAAAATTAAGAAGACATTTATATAAGCATTCAAATTGGGACGAAATGGACTGTCAT
** * * * ** *
32841712 GGAAAACTACCCAGCCAAACCGCCCTGCCAAAATATGAATT-AATGC-ACTTTAAGAGAACATTT
1 GCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTG-ATTGAATGCAAAATTAAGAGGACATTT
* * ** * * * *
32841775 TTATAAGCATTCAAATTGGGATGAAATGGACTATAATGAAAAACTACCCAGCCAAACTGCCATGC
65 CTATAAGCATTCAAATTGGAACAAAATGGACTGT-ATGCAAAACTACCTAGCCAAACTGCCCTGC
* * * * * * *
32841840 CAAAA-TTGATTGAATGCAAAAAT-AGAAGAATATTTATATAAGCTTTCAAATT-GAGACAAAAT
129 CAAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCAATTTGGA-ACGAAAT
* ** * ** * * * *
32841902 GGGTTGTCATG-CAAAACTACCCAACCAAACTGCCCTATCAAAATTTGATTGAATGTAAAATTAT
192 GGATTGTCATGTC-AAACTACCCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAA
* * * * * * *
32841966 GAGGACATTTCTATAAGCATTCAATTTGGGAAGAAATGGACTATCATGTCAAACTAC-CTTGCCA
256 GAGCACATTTCTATTAGTATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTC-TGCCA
* * * * * * *
32842030 AACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGACTTTTCCATTAA-CATTTAAATT
320 AAATT---TG-----A--T--TT-AATACAAAATTAAGAGGACATTTCTA-TAAGCATTCAAAAT
* * * * * * *
32842094 GGAACGAAATAGACTA-TCATGCCAAACTACTCTGCCAAAATTTGATTTAATGCA-AAATTAAGA
371 GGGACGAAATTGA-TAGTCAAGCCAAACTGCCCTGCTAAAA-TTGATTGAATG-ATAAATTAAGA
* * * *
32842157 AGACATTTCTATAAGCATTCAAATTGGGATGAAACT-GACTGACAAGCC-AA--ACC-A--C---
433 GGACATTTCTATAAGCATTCAAATTGGGACGAAA-TGGACTGTCATGCCAAACTACCAAGCCAAA
* * * * ** *
32842212 CT----TGCTAAAA-TTGATTGATTG-ATAAATTAAGATAACATTTTTACAAGCATTCAAATTGG
497 CTGCCCTGCCAAAATTTGGTTGAATGCA-AATTTAAGAGGACATTTTTATAAGCATTCAAATTGG
* * * * * * * * * *
32842271 GACAAAATGGACTGTAATGCCAAACAACCTAGTCTAATTGCCCTGCCAATATTTGCTTGAGTGTA
561 GACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAA-ATTTGATTGAATGCA
* * * * * * *
32842336 AAATTAAAAAAGGACATTTTTATTAGCATTTAAATTGGAATGAAATGGACTATCAT
625 AAATT-AAGAA-GACATTTATATAAGCATTCAAATTGGGACGAAATGGACTGTCAT
* *
32842392 GCCAAACT----------ACT---CTGGCAAAATTTGATTTAATGCAAAATTAAGAGGACATTTC
1 GCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTC
* * * * *
32842444 TATAAGCATTCAAATTGGGACAAAAT----TGTCTG------T--CAAGCCAAACTGCCTTG-CT
66 TATAAGCATTCAAATTGGAACAAAATGGACTGTATGCAAAACTACCTAGCCAAACTGCCCTGCCA
* * * * * **
32842496 AAA-TTGAATG-AT---AAATTAAGAGGACATTTCTACAAGCATTCAAATTGGGATGAAATGGGC
131 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGAACGAAATGGAT
* ** * * * * *
32842556 TGTCATGCCAAACTACCAAGCCAAAC-AGCCCTGCCAAAATTTTG-TTCAATACGAATTTAAGAG
196 TGTCATGTCAAACTACCCTGCCAAACTA-CCCTGCCAATA-TTTGCTTGAATGCAAAATTAAGAG
* * * * * * * * * * ** *
32842619 GACATTTTTATAAGCATTCAAATTAGGACAAAATGGACTGTCTTTCCAAATTACCCAACC-AAAC
259 CACATTTCTATTAGTATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGCCAAAAT
** * * * * * *
32842683 TTGATAGAA-AGAAAAAATAAGAGGACATTTATATAAGCATTCAAATTGCGACAAAATGGAATGT
324 TTGATTTAATA-CAAAATTAAGAGGACATTTCTATAAGCATTCAAAATGGGACGAAAT----TG-
* * * * * *
32842747 CATGCAAAACTGCCAAACCAAACTGCCCTGCCGAAATTTGATTAAATGGA-AAATTAAGATGACA
383 -AT-----A--GTCAAGCCAAACTGCCCTG-CTAAAATTGATTGAAT-GATAAATTAAGAGGACA
* * * *
32842811 TTTCTATAAGCATTCAATTTAGGACTAAATGGATTGTCATG------T-------CAAACTGCCC
438 TTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCC
* * * * * * * * * * *
32842863 TGCCAATATTTGCTTGGATGAAAAATAAAGAGAACATTTCTATTAGCATTAAAATTGGAACGAAA
503 TGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAA
* *
32842928 TAGACTTTCATGCCAAACT----------ACT--CC-GCCAATATTTGATTGAATG-AAAAGTTA
568 TGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAA-ATTTGATTGAATGCAAAA-TTA
* * * * * *
32842979 AGAGGACATTTCTGTAAGCATTTAAATTGGGACGAAATGGATTGTAAT
631 AGAAGACATTTATATAAGCATTCAAATTGGGACGAAATGGACTGTCAT
* * * * * * * * * *
32843027 GCAAAACTACCTAGCCAAACCGCTCTGCGAAAATTAGAGTGAATACAAAATTAAGAAGACATTCC
1 GCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTC
* *** * * * *
32843092 TATAAGCATTCAAATTGGGAGGGAATTGACTG--T------C-A---GGCCAAAGTGCCCTGCTA
66 TATAAGCATTCAAATTGGAACAAAATGGACTGTATGCAAAACTACCTAGCCAAACTGCCCTGCCA
* * * * * * * *
32843145 AAA-TTCATTTAAAGCAAAATTAATAGGACATTTTTATAAGCATTCAAATTGGGACTAAATGGAT
131 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGAACGAAATGGAT
* * * * * **
32843209 TGTCATG-CAAAACTACCCAGCCTAATTTCCCTGCCACA-ATTTGATTGAATGC-ACTTTAAGAG
196 TGTCATGTC-AAACTACCCTGCCAAACTACCCTGCCA-ATATTTGCTTGAATGCAAAATTAAGAG
* * * * * * * * *
32843271 GACATTTTTATCAGCATTCAGATTGAGACGAAATAGACTATAAAGCAAAATTATGCAGCCAACCT
259 CACATTTCTATTAGTATTCAAATTGGGACGAAATGGAC--T---G-----TCAT---GCCAAACT
* * * * * * * *
32843336 GCCCTGCCAAAA-TTGATTGAATGCAAAGA-TAGGAGAATATTTCTATAAGCATTCAAATTGGGA
311 ACTCTGCCAAAATTTGATTTAATACAAA-ATTAAGAGGACATTTCTATAAGCATTCAAAATGGGA
* * * * *
32843399 CAAAATGGGCTGTCATGCAAAACTACTCAA-CCAAATTGCCTTG-TCAAAATTTGATTGTATGCA
375 CGAAA-------T--TG----A-TAGTCAAGCCAAACTGCCCTGCT-AAAA-TTGATTGAATG-A
* * * *
32843462 -AAATTAAGAGGACATTTTTATAAGCATTC-AATTCGGGAAGAAATGGTCTGTCATGTCAAACTA
423 TAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GGGACGAAATGGACTGTCATGCCAAACTA
** * * * * * * *
32843525 CCCTGCCAAACTGCCCTGCCAATATTTGCTTGAGTGTAAAATTAAGAGAACATTTCTATTAATG-
487 CCAAGCCAAACTGCCCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTA-TAA-GC
* * * * *
32843589 ATT-AAATTGGAACGAAATGGAATGTCAAGCCAAACT----A--C--TCTG---T-CAAAATTTG
550 ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAATTTG
* * * **
32843641 ATTTAATGCAAAATTAAAAAGACATTTCTATAAGCATTCAAATTGGGAC-AACATTTACTGT-A-
615 ATTGAATGCAAAATTAAGAAGACATTTATATAAGCATTCAAATTGGGACGAA-ATGGACTGTCAT
* * * * * * *
32843703 G-----C-GCCAAG-C---C-GCCCTACTAAAA-TTAATTGATTG-ATAAATTAAAATGACATTT
1 GCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTT
* * * * * * *
32843755 CAATAAGCATTCAAAATTGGGACGAAATGGACTGTCATGCCAAACTACCAAGCCAAGCTGCCCTA
65 CTATAAGCATTC-AAATTGGAACAAAATGGACTGT-ATGCAAAACTACCTAGCCAAACTGCCCTG
* * * * * * * *
32843820 CTAATATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGTATTCAAATTGGAATGAAATG
128 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGAACGAAATG
** * * * * * * *
32843885 GGCTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAACGTAAAATTAAGA
193 GATTGTCATGTCAAACTACCCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAGA
* ** * * * * *
32843950 GGATGTTTCTATGAGTAATCAATTTGGAACGAAATGGATTGTCATGTTAAACTTCCCTAGCAAAC
258 GCACATTTCTATTAGTATTCAAATTGGGACGAAATGGACTGTCATG----------C---CAAAC
* * * *** * ** * * * *
32844015 TGCCCTGCCAATATTTTCCTCAATGTAAAATTAAGAGCACATTTCTATTAGGATTCAAATTGGGA
310 TACTCTGCCAAAATTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAAATGGGA
* * * * * * *
32844080 C-AAAATGCACTA-TCATGCC-AACTACTCTGCCAAAATTTGATTTAATGCA-AAATTAAGAGAA
375 CGAAATTG-A-TAGTCAAGCCAAACTGCCCTGCTAAAA-TTGATTGAATG-ATAAATTAAGAGGA
* * ** * * * *
32844141 CAATTCTATAAGCATTCAAATTGGGACAAAATTAATTGTTAAGCTAAACTACCCAA-CCAAACTG
436 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTA-CCAAGCCAAACTG
* * * ** * * * ** *
32844205 CCCTGCCAAAA-TTGATTGAAAGTAAAAATAAGAGGAAATTTATATCAGCATTCAAATTGCAACA
500 CCCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACG
* * * * * * * *
32844269 AAATGAACTGTCACGCAAAACTACCCAACCAAACTGCCCCTACCAATGTTTGATTAAATGGAAAA
565 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTG-CCCTGCCAA-ATTTGATTGAATGCAAAA
* * * *
32844334 TTAAGAGGACATTTCTATAAGCATTTAATTTGGGACGAAATGGA-T-TC-T
628 TTAAGAAGACATTTATATAAGCATTCAAATTGGGACGAAATGGACTGTCAT
* * * * * * *
32844382 --C--A-T----A-TCAAACTACCCTGTCAATATTT-ACTTGAATGCACAATAAAGAGAACATTT
1 GCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGA-TTGAATGCAAAATTAAGAGGACATTT
** * * * * * *
32844436 CTATTTGCATTCAAATTGGAACGAAATAGATTGTCATGCCAAACTA--T--------T--TC-AC
65 CTATAAGCATTCAAATTGGAACAAAATGGACTGT-ATGCAAAACTACCTAGCCAAACTGCCCTGC
* * * *
32844488 CAAAATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAAATTGGGAA--AAATG
129 CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC-AATTTGGAACGAAATG
* * * * *
32844551 GA----C-TGT---A--A---TGCCAAACTGCCCTGCCAAAATTAGATTGAATGCAATATTAAGA
193 GATTGTCATGTCAAACTACCCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAG-
* * * * * * * * * *
32844603 AG-ACATTTCTATAAGCATTCAAATTGGGAGGGAATTGACTATCA-GAACAAACTGCCCTGCTAA
257 AGCACATTTCTATTAGTATTCAAATTGGGACGAAATGGACTGTCATG-CCAAACTACTCTGCCAA
* * *
32844666 AA-TTCATTGAATGA-AAAATTAAGAGGACATTTATATAAGCATTCAAATTAGGATGAAATGGAC
321 AATTTGATTTAAT-ACAAAATTAAGAGGACATTTCTATAAGCATTC-AA--A--ATG----GGAC
** * * **
32844729 TGTCATTCGAAACTA-TCAAGCCAAATTGCCCTGCCAAAATTTGATTGAATGA-ACTTTAAGAGG
376 -GAAATT-G--A-TAGTCAAGCCAAACTGCCCTGCTAAAA-TTGATTGAATGATAAATTAAGAGG
* * * *
32844792 ATATTT-TATAAGCATTCAAATTAGGACAAAATGGACTGTCATGCCAAACGACCCAA-CCAAACT
435 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTA-CCAAGCCAAACT
* * * ** * * *
32844855 ACCCTGCC-AAACTTGATTGAATGCAAAAATAAGAGGTCATTTCTATAAGCATTTAAATTGGGAC
499 GCCCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* * * * * *
32844919 AAAATGGA-TGGTCATGCCAAACTACCCAGCCAAATTGCCATTCTAAAATTGATTGAATG-ATAA
564 GAAATGGACT-GTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAATTTGATTGAATGCA-AA
* * * ** * *
32844982 ATTAAGAGGACATCTCTATAAGCATTCAAATTTTGTCGAAATGGATTGTCAT
627 ATTAAGAAGACATTTATATAAGCATTCAAATTGGGACGAAATGGACTGTCAT
* * * * * *
32845034 G-CAACACTACCCAA-CCAAATTGACCAGCTAAAA-TCGATTGAATGCAAAATTCAGAGGACATT
1 GCCAA-ACTA-CCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATT
** * *
32845096 TCTATAATAATTCAAATTTGG-ACAAAATGGACTGTCATGCCAAACTACCAAGCCAAACT
64 TCTATAAGCATTCAAA-TTGGAACAAAATGGACTGT-ATGCAAAACTACCTAGCCAAACT
32845155 ATCCCACAAA
Statistics
Matches: 7367, Mismatches: 1460, Indels: 1347
0.72 0.14 0.13
Matches are distributed among these distances:
624 1 0.00
625 39 0.01
626 4 0.00
627 2 0.00
630 1 0.00
635 49 0.01
636 41 0.01
637 19 0.00
638 5 0.00
639 101 0.01
640 21 0.00
641 3 0.00
642 6 0.00
643 2 0.00
644 2 0.00
645 4 0.00
646 3 0.00
648 85 0.01
649 178 0.02
650 283 0.04
651 273 0.04
652 143 0.02
653 186 0.03
654 92 0.01
655 150 0.02
656 33 0.00
657 9 0.00
658 4 0.00
659 6 0.00
660 5 0.00
661 173 0.02
662 79 0.01
663 32 0.00
664 114 0.02
665 363 0.05
666 265 0.04
667 195 0.03
668 363 0.05
669 48 0.01
670 24 0.00
671 61 0.01
672 30 0.00
673 7 0.00
674 45 0.01
675 470 0.06
676 21 0.00
677 146 0.02
678 940 0.13
679 955 0.13
680 499 0.07
681 257 0.03
682 7 0.00
683 1 0.00
684 3 0.00
685 8 0.00
686 48 0.01
687 1 0.00
688 4 0.00
689 5 0.00
690 1 0.00
691 6 0.00
692 7 0.00
693 8 0.00
694 9 0.00
695 8 0.00
696 5 0.00
697 14 0.00
698 41 0.01
699 6 0.00
700 3 0.00
701 3 0.00
702 2 0.00
703 3 0.00
705 2 0.00
706 5 0.00
707 2 0.00
708 2 0.00
709 10 0.00
710 251 0.03
711 62 0.01
712 3 0.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (678 bp):
GCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTC
TATAAGCATTCAAATTGGAACAAAATGGACTGTATGCAAAACTACCTAGCCAAACTGCCCTGCCA
AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGAACGAAATGGAT
TGTCATGTCAAACTACCCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAGAGCA
CATTTCTATTAGTATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACTCTGCCAAAATTT
GATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAAATGGGACGAAATTGATAGTCAA
GCCAAACTGCCCTGCTAAAATTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCATTCAAA
TTGGGACGAAATGGACTGTCATGCCAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGGTTGAA
TGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAAC
TACCCAGCCAAACTGCCCTGCCAAATTTGATTGAATGCAAAATTAAGAAGACATTTATATAAGCA
TTCAAATTGGGACGAAATGGACTGTCAT
Found at i:32838857 original size:87 final size:88
Alignment explanation
Indices: 32838601--32838858 Score: 292
Period size: 88 Copynumber: 2.9 Consensus size: 88
32838591 GGAAACTGCC
* * * * * *
32838601 CTGCCAATATTTGCTTCAATACAAAATTAAGAGCACATTTCTATTAGTATTCAAATTGGGACGGA
1 CTGCCAAAATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC-GA
* *
32838666 AA-GGACTGTCATGCCAAATTACT
65 AATGGACTATCATGCCAAACTACT
* * *
32838689 CTGCCAAAATTTGATTTAATACAAAATTAAGAGGACATTTCTATAAGCATTTAAAATGGGACGAA
1 CTGCCAAAATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
* * *
32838754 ATTGA-TAGTCAAGCCAAACTGCT
66 ATGGACTA-TCATGCCAAACTACT
* *
32838777 CTGCTAAAA-TTGATTGAATGA-TAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAGG-CG
1 CTGCCAAAATTTGATTGAAT-ACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG-GGACG
*
32838839 AAATGGACTATCTTGCCAAA
64 AAATGGACTATCATGCCAAA
32838859 ATACCCAACC
Statistics
Matches: 144, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
87 63 0.44
88 81 0.56
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (88 bp):
CTGCCAAAATTTGATTGAATACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
ATGGACTATCATGCCAAACTACT
Found at i:32839423 original size:88 final size:85
Alignment explanation
Indices: 32839300--32839542 Score: 272
Period size: 87 Copynumber: 2.8 Consensus size: 85
32839290 TGCTTGAGTG
* * *
32839300 CAAAATTAAAACGACATTTCTATTAGCATTTAAATTGGAACGAAATGGACTGCCATGCCAAACTA
1 CAAAATTAAAACGACATTTCTATAAGCATTCAAATTGG-ACGAAATGGACTGTCATGCCAAACTA
** *
32839365 CTTTGGC-AAAATTTGATTTAATT
65 CCCT-GCTAAAA-TTGATTGAA-T
* * * * *
32839388 CAAAATTAAGACGACATTTCTATAAGTATTCAAATTTGGACGAAATTGACTGTCAAGCCAAACTG
1 CAAAATTAAAACGACATTTCTATAAGCATTCAAA-TTGGACGAAATGGACTGTCATGCCAAACTA
32839453 CCCTGCTAAAATTGATTGAAT
65 CCCTGCTAAAATTGATTGAAT
* * * * *
32839474 GATAAATTAAAAGGACATTTCTATAAGCATTCAATTTGGGACGAAATGGACGGTTATGCCAAACT
1 CA-AAATTAAAACGACATTTCTATAAGCATTCAAATT-GGACGAAATGGACTGTCATGCCAAACT
32839539 ACCC
64 ACCC
32839543 AGCCAAACTG
Statistics
Matches: 130, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
86 4 0.03
87 64 0.49
88 58 0.45
89 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (85 bp):
CAAAATTAAAACGACATTTCTATAAGCATTCAAATTGGACGAAATGGACTGTCATGCCAAACTAC
CCTGCTAAAATTGATTGAAT
Found at i:32839451 original size:578 final size:578
Alignment explanation
Indices: 32836477--32841730 Score: 1843
Period size: 578 Copynumber: 9.2 Consensus size: 578
32836467 ATTGTTATTT
* * * ** *
32836477 CAAACCACTTTGCAACAATTTTG-TTGAATGAATAATTAAGAGAACATTTCGGTAAGCATTAAAA
1 CAAACTACTCTGCAA-AA-TTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGTATTAAAA
* * * * * * * **
32836541 TTGGGGCGAAATGGACTGTCATTCCAAACTACTCTGACAAAA-T-A-TG-AT--TTAA-T-GCA-
64 TTGGGACGAAATGGACTGTAATGCCAAACTGCCCTGCCAAAATTGATTGAATGATAAATTAAAAG
* * * * * * *
32836597 -ACATTTCTATAAGCATTCAAATTGAGACAAAATGGACTGTCATGCCAAACTACCCAGCCAAATT
129 GACATTTCTATAAGAATTCAATTTGAGACGAAATGGACGGTCATGCCAAACTAACAAGCCAAACT
* * * * * * * *
32836661 ACCCTG-CAATATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGAATTTAAA-TGGGAT
194 GCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGAACACTTTTATAAGCATTCAAATTAGGAT
* * * * * * * * * *
32836724 AAAATAGTCTGTCATTCCAAACTACCCAGCCAAATTGCCCTACCAAAATTGATTGAAAGTAAAAA
259 GAAATAGACTATCATACAAAACTACCAAGCCAAACTGCCTTACCAAAATTGATTAAAAGCAAAAA
* * * * *
32836789 TAAGAGGACATTTATATCAA-CATTCAAATTGCGACAAAATGGACTATCATGCAAAACTACCCTA
324 TAAGAGGCCATTTATAT-AAGCATTCAAATTGGGACAAAATCGACTGTCATGCAAAACTACCCAA
* * * * * *
32836853 CCAAACTGCCCTGCCAAAATTTAATTAAATGGAAAATTAAGAGGGCATTTCTATAAGCATTCAAT
388 CCAAACTGCCCTGCCAAAATTTGATTAAATAGAAAATTAACAGGACATTTCTATAAGCAATAAAT
* * * * * * ** * * ** * * *
32836918 TTGAGACGAAATGGATTGTTATG-TCATACTGCCCTAAC-AAATTGCCCTGCCAATATTTTCTTG
453 TTGCGACAAAATGGATTGTCATGCT-AAACTACCATGCCAAAACTACCCAACAAATATTTGCTTA
* *** ***
32836981 AATGCAAAA-TAAAGAAAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTGTTATGT
517 AATGCAAAATTAAA-AGAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTACCACAC
* * * * * *
32837043 CATACTATTCCTCCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
1 CAAACTACT-CTGCAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGTATTAAAAT
** * * * * * *
32837108 TGGGAAAAAATGGACTTTAATGCCAAGCTACCCTGCCAATATTTGGTTGAATGCA-AATTTAAAA
65 TGGGACGAAATGGACTGTAATGCCAAACTGCCCTGCCAA-AATTGATTGAATG-ATAAATTAAAA
* * * * * ** * *
32837172 GGACATTTTTATAAGCATTCAAATTGGGACAAAATGGATAGTCATGCAAAACTACCCAA-CCAAA
128 GGACATTTCTATAAGAATTCAATTTGAGACGAAATGGACGGTCATGCCAAACTA-ACAAGCCAAA
* * * * *
32837236 CTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACA-TTTCTATAAGTATTC-AATTTG
192 CTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGAACACTTT-TATAAGCATTCAAATTAG
* * * * * * * * * * * * *
32837299 AGACGAAATGGATTGTCATGTC-AAACTAGCC-TGCCAAATTGCCCTGCCAACATTTGCTTGAAC
256 -GATGAAATAGACTATCAT-ACAAAACTA-CCAAGCCAAACTGCCTTACCAA-AATTGATTAAAA
* * ** * * * * * * *
32837362 TCAAAATTAAGAGAACATTTCTATTAGCATTCAAATTGGGACGAAATAGACTGTTATGCCAAATT
317 GCAAAAATAAGAGGCCATTTATATAAGCATTCAAATTGGGACAAAATCGACTGTCATGCAAAACT
* * * *
32837427 ACTCTACC--A----------AAAATTTGATTTAAT-GAAAAATTAAAAGGACATTTCTATAAGC
382 ACCCAACCAAACTGCCCTGCCAAAATTTGATTAAATAG-AAAATTAACAGGACATTTCTATAAGC
* * * * ** ***
32837479 ATTCAAA-TTGGGA-AGAA---ATTG--A--CT--A-T--CAAGCC-AAACTGTCTTGCTAAA-A
446 AAT-AAATTTGCGACAAAATGGATTGTCATGCTAAACTACCATGCCAAAACTACCCAAC-AAATA
* * ** * * * * *
32837528 -TTGGTTGAATGTTAAATTAATAGGACATTTCTATAAACATTCAAATTGGGACGAAAAGGACTGT
509 TTTGCTTAAATGCAAAATTAAAAGAACATTTCTATTAACATTCAAATTGGAACGAAATGGAC--T
*
32837592 CAAGTCAAACTACTCCTC
572 --A--C---C-A---CAC
* * * * * * *
32837610 CAAACTGCACTGCCAAAATTTTG-TTGAATGATAAATTAAAAGGACATTTCTATAAGCATTCAAA
1 CAAACTACTCTG-CAAAA-TTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGTATTAAAA
* * * *
32837674 TTGAGACGAAAAGGACTGTTATGCCAAACTACTCAGCCAAACTGCTTTGCCAAAATTTGGTTGAA
64 TTGGGACGAAATGGACTGTAATGCC-AA--ACT--G-C---C--C--TGCCAAAA-TTGATTGAA
* * * * * * * * * *
32837739 TGCA-AATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACAAAATTGACTGTCATGCGAAA
115 TG-ATAAATTAAAAGGACATTTCTATAAGAATTCAATTTGAGACGAAATGGACGGTCATGCCAAA
* * * * *
32837803 CTACCCAGCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATTAATA-AGACA-TTTCTATA
179 CTAACAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGA-ACACTTT-TATA
* * * ** * ** * * **
32837866 AGCATTCAATTTCGTACAAAAT-GTACTATCATGTC-AAACTACCCTGCCAAACTACCCTATTAA
242 AGCATTCAAATTAGGATGAAATAG-ACTATCAT-ACAAAACTACCAAGCCAAACTGCCTTACCAA
* * * * ** * * * * * * * *
32837929 TATTTGCTTGAATGCAAAGTTAAAAGGACATTTCTATTAGAATTTAAATTGGGACGAAATGGACT
305 -AATTGATTAAAAGCAAAAATAAGAGGCCATTTATATAAGCATTCAAATTGGGACAAAATCGACT
* * * * * * * *
32837994 CTCATGCCAAACTA--C--TC-TACT----T----AAATTTGATTTAATACAAAATTAAGAAGAC
369 GTCATGCAAAACTACCCAACCAAACTGCCCTGCCAAAATTTGATTAAATAGAAAATTAACAGGAC
* * * * * * * * * *
32838046 AATTCTATAAGTATTCAAA-TTGGGACGAAATTGATTGTCAAGCCAAACTGCCTTG------CT-
434 ATTTCTATAAGCAAT-AAATTTGCGACAAAATGGATTGTCATGCTAAACTACCATGCCAAAACTA
* * * * *
32838103 ---AA-AATTAATTG----AATG-ATAAATTAAGAGAAAATTTCTA-TAAGCATTCAAATTGGGA
498 CCCAACAAATATTTGCTTAAATGCA-AAATTAAAAGAACATTTCTATTAA-CATTCAAATTGGAA
*
32838158 CGAAATTGACTGTCATGCCAAACTACCAAGC
561 CGAAATGGAC--T-A---C---C-A-C-A-C
* * * * * * * * * * *
32838189 CAAACTGCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGGATATTTTTATAAGCATTCAAAT
1 CAAACTACTCTGC-AAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGTATTAAAAT
* * * *
32838254 TGGGACAAAATTGACTGTCATGCGAAACTACCCAGTCAAACTGCCCTGCCCAAATTTGATTGAAT
65 TGGGACGAAATGGACTG---T----AA-T-----GCCAAACTGCCCTG-CCAAAATTGATTGAAT
* * * * *
32838319 GCA-AAATTAATAA-GACATTTCTATAAGCATTCAAATTGGGACGAAATTGACTGTCATGCCAAA
116 G-ATAAATTAA-AAGGACATTTCTATAAGAATTCAATTTGAGACGAAATGGACGGTCATGCCAAA
* * * * *
32838382 CTACCAAGCCAAACTGCCCTGCTAATATTTGGTTGAATGCAAATTTAAGAGGAA-ATTTTTATAA
179 CTAACAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGA-GAACACTTTTATAA
* * * * * * * * *
32838446 GTATTCATATT-GGAATGAAATGGACTGT-ATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAA
243 GCATTCAAATTAGG-ATGAAATAGACTATCATACAAAACTACCAAGCCAAACTGCCTTACCAAAA
* * * * * * * * * * * * *
32838509 TTTGATTGAATGCAAAATTAAGAGGACATTTCTATGAGTAATCAATTTGGAACGAAATGGATTGT
307 -TTGATTAAAAGCAAAAATAAGAGGCCATTTATATAAGCATTCAAATTGGGACAAAATCGACTGT
* * * * ** * * * * * *
32838574 CATGTCAATA-TTCTCTAGGAAACTGCCCTGCCAATATTTGCTTCAATACAAAATTAAGAGCACA
371 CATG-CAAAACTACCCAACCAAACTGCCCTGCCAAAATTTGATTAAATAGAAAATTAACAGGACA
* * * * * * * *
32838638 TTTCTATTAGTATTCAAA-TTGGGACGGAAA-GGACTGTCATGCCAAATTA-C-T-------CT-
435 TTTCTATAAGCAAT-AAATTTGCGAC-AAAATGGATTGTCATGCTAAACTACCATGCCAAAACTA
* * * * * * * * *
32838691 -GC--CAAA-ATTTGATTTAATACAAAATTAAGAGGACATTTCTA-TAAGCATTTAAAATGGGAC
498 CCCAACAAATATTTGCTTAAATGCAAAATTAAAAGAACATTTCTATTAA-CATTCAAATTGGAAC
* *
32838751 GAAATTGA-TAGTCA-AGC
562 GAAATGGACTA-CCACA-C
* * * * *
32838768 CAAACTGCTCTGCTAAAA-TTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCATTCAAAT
1 CAAACTACTCTGC-AAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGTATTAAAAT
* * * * *
32838832 TGAGG-CGAAATGGACTATCTTGCCAAAATACCCAACCAAACTGTCCTGCCAAAATTTTATTGAC
65 TG-GGACGAAATGG---A-C-TG---TAAT-----GCCAAACTGCCCTGCCAAAA-TTGATTGAA
* * * * * *
32838896 TGCA-AATTTAAGAGGACATTTTTATAAGAATT-TATATTGAGATGAAATGGACTGTCATGCCAA
115 TG-ATAAATTAAAAGGACATTTCTATAAGAATTCAAT-TTGAGACGAAATGGACGGTCATGCCAA
* * *
32838959 ACTAACAAGCCAAATTGCCCTGCCAAAATTTGATTGAATGC-ACTTTAATATG-ACACTTTTATA
178 ACTAACAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGA-GAACACTTTTATA
* * * * *
32839022 GGCATTCAAATTAGGATGAAATAGACTGTCATGCCAAACTACCCAGCCAAACTGCGC-TACCAAA
242 AGCATTCAAATTAGGATGAAATAGACTATCATACAAAACTACCAAGCCAAACTGC-CTTACCAAA
* * ** ** * * * *
32839086 A-TGAATTGAATGCAAAAATAATTGGGTATTTCTATAAGCATTCACATTGGGACAAAATGGGCTG
306 ATTG-ATTAAAAGCAAAAATAAGAGGCCATTTATATAAGCATTCAAATTGGGACAAAATCGACTG
* * * *
32839150 TCATGCAAAACTACCCAACCAAACTGCCTTGTCAAAATTTGATTGAATAGAAAATTAACAGGATA
370 TCATGCAAAACTACCCAACCAAACTGCCCTGCCAAAATTTGATTAAATAGAAAATTAACAGGACA
* * * *
32839215 TTTCTATAAGCATTCAATTTG-G-CAAGAAATGGATTGTCATG-TCGAACTACCCTGCC-AAACT
435 TTTCTATAAGCAATAAATTTGCGAC-A-AAATGGATTGTCATGCT-AAACTACCATGCCAAAACT
* * * *
32839276 ACCCAACAAATATTTGCTTGAGTGCAAAATTAAAACG-ACATTTCTATTAGCATTTAAATTGGAA
497 ACCCAACAAATATTTGCTTAAATGCAAAATTAAAA-GAACATTTCTATTAACATTCAAATTGGAA
* **
32839340 CGAAATGGACTGCCATGC
561 CGAAATGGACTACCACAC
* * ** *
32839358 CAAACTACTTTGGCAAAATTTGATTTAATTCAAAATTAAGACG-ACATTTCTATAAGTATTCAAA
1 CAAACTACTCT-GCAAAATTTGATTGAATGAAAAATTAAGA-GAACATTTCTATAAGTATTAAAA
* * *
32839422 TTTGGACGAAATTGACTGTCAA-GCCAAACTGCCCTGCTAAAATTGATTGAATGATAAATTAAAA
64 TTGGGACGAAATGGACTGT-AATGCCAAACTGCCCTGCCAAAATTGATTGAATGATAAATTAAAA
* * * * *
32839486 GGACATTTCTATAAGCATTCAATTTGGGACGAAATGGACGGTTATGCCAAACTACCCAGCCAAAC
128 GGACATTTCTATAAGAATTCAATTTGAGACGAAATGGACGGTCATGCCAAACTAACAAGCCAAAC
* * * * * *
32839551 TGTCCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGAACATTTTTTTAAGCATTCAAATTTGGT
193 TGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGAACACTTTTATAAGCATTCAAATTAGGA
* * * *
32839616 TGAAATAGACTATTATACAAAACTACCAAGCTAAATTGCCTTGCCAAAATTGATTAAAAGCAAAA
258 TGAAATAGACTATCATACAAAACTACCAAGCCAAACTGCCTTACCAAAATTGATTAAAAGCAAAA
* * * *
32839681 CTAAGAGGCCATTTATATAAGCGTTCAAATTGTGACAAAATCGACTGTCATGGAAAACTACCCAA
323 ATAAGAGGCCATTTATATAAGCATTCAAATTGGGACAAAATCGACTGTCATGCAAAACTACCCAA
* * * *
32839746 CCAGACTGCCCTGCCAAAATTTGATTAAATTGAAAATTGAGAGGACATTTCTATAAGCAATAAAT
388 CCAAACTGCCCTGCCAAAATTTGATTAAATAGAAAATTAACAGGACATTTCTATAAGCAATAAAT
** * *
32839811 TTGCGACAAAATGGATTGTCATGCTAAACTACCATGCCAAAACTACCCTGCTAATATTTTCTTAA
453 TTGCGACAAAATGGATTGTCATGCTAAACTACCATGCCAAAACTACCCAACAAATATTTGCTTAA
* * *
32839876 ATGCAAAATTCAGAGAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTATCACAC
518 ATGCAAAATTAAAAGAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTACCACAC
* *
32839937 CAAACTACTCTGCCAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATACGTATTAAAATT
1 CAAACTACTCTGCAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGTATTAAAATT
*
32840002 GGGATGAAATGGACTGTAATGCCAAACTACCCAGCCAAACCGCCCTGCCAAAATTAGATTGAATG
66 GGGACGAAATGGACTGTAATGCCAAACT-------------GCCCTGCCAAAATT-GATTGAATG
* * * * *
32840067 CA-AAATTAATAA-GACATTTCTATAAGCATTCAAATT-AGGAGGGAATTGA---T--TG-----
117 -ATAAATTAA-AAGGACATTTCTATAAGAATTCAATTTGA-GACGAAATGGACGGTCATGCCAAA
* * * * * * *
32840119 -T--CAGGCCAAACTGCCTTGCTAAAA-TTCATTGAATGCAAAATTAAGAGGACA-TTTCTCTAA
179 CTAACAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAATTTAAGAGAACACTTT-TATAA
* * * * * * * * *
32840179 GCATTCAAATTGGGACGAAATGGACTATCTTGCCAAACTACTC-ATCCAAACTTCCCTACCAAAA
243 GCATTCAAATTAGGATGAAATAGACTATCATACAAAACTAC-CAAGCCAAACTGCCTTACCAAAA
* * * ** ** * * ** *
32840243 TTTGGTTGAATGCAAATTTTTGAGGACATTTTTATAATTATTCAAATTGGGACGAAAT-GAACTG
307 -TTGATTAAAAGCAAAAATAAGAGGCCATTTATATAAGCATTCAAATTGGGACAAAATCG-ACTG
* * * * * * * *
32840307 TCATTCCAAACTA-CCTAGCAAACAGCCCTGCCAAAA-TTGATTGAA-AGCAAAAATAAGAGGAC
370 TCATGCAAAACTACCCAACCAAACTGCCCTGCCAAAATTTGATTAAATAG-AAAATTAACAGGAC
* * * * ** *
32840369 GTTTATATAAGCATTCAAA-TTGCGACAAAATGGCA-TATCATGGAAAACTACC-TAACC-AAAC
434 ATTTCTATAAGCAAT-AAATTTGCGACAAAATGG-ATTGTCATGCTAAACTACCAT-GCCAAAAC
** * * * * *
32840430 TACTCCGCCAAA-ATTTGCTTAAATGGAAAATTAAGAGGACATTTTTA-TAAGCATTCAATTTGG
496 TAC-CCAACAAATATTTGCTTAAATGCAAAATTAAAAGAACATTTCTATTAA-CATTCAAATTGG
* * *
32840493 GACGAAATGGATTGCCATGACAAACTGCCCTGC
559 AACGAAATGGA----C-T-----AC--CAC-AC
* * * ** * * * * * * * *
32840526 CAAACTACCCAGCCAATATTTGCCTGAATGCAAAATAAAGAAAAAATGTCTATTAGCATTCAAAT
1 CAAACTACTCTG-CAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGTATTAAAAT
* * * * *
32840591 T-GGA--ACA---A----AAT---AAACTGTCATGCCAAAATTTGATTTAATGCA-AAATTATAA
65 TGGGACGAAATGGACTGTAATGCCAAACTGCCCTGCCAAAA-TTGATTGAATG-ATAAATTAAAA
* * * * * * *
32840642 GGACATTTATATAAGCATTCAAATTGGGATGAAAT----TGTC-TG------T--TAAGCCAAAC
128 GGACATTTCTATAAGAATTCAATTTGAGACGAAATGGACGGTCATGCCAAACTAACAAGCCAAAC
* * * * * * *
32840694 TGCCCTGCTAAAA-GTGATTGAATG-ATAAATTAAGAGGAC-GTTTATATAAGAATTCAAATTGG
193 TGCCCTGCCAAAATTTGATTGAATGCA-AATTTAAGAGAACACTTT-TATAAGCATTCAAATTAG
** * * * * * *
32840756 GATGAAAT-GGGT-TGCAATGAC-AAACTACCCAGCCAAACTGCCATGCCAAAATTTGGTTGAAT
256 GATGAAATAGACTAT-C-AT-ACAAAACTACCAAGCCAAACTGCCTTACCAAAA-TTGATTAAAA
** * * * * * * * * * *
32840818 GCAAATTTAAGAGGACATTTTTATAATCATTCAAATTGAGACGAAATGGACTATTATTCCAAACT
317 GCAAAAATAAGAGGCCATTTATATAAGCATTCAAATTGGGACAAAATCGACTGTCATGCAAAACT
* * * * * * * **
32840883 ACCCAGCCAAACTGCTCTGCCAAAA-TTGATTGAA-AGCAAAAATAAGAGGAAATTTATATAAAT
382 ACCCAACCAAACTGCCCTGCCAAAATTTGATTAAATAG-AAAATTAACAGGACATTTCTATAAGC
* ** * * * *
32840946 ATTCAAA-TTGTAAC-AAATAGACTGTCATGC-AAA--A-C-TG-C---GCT--GC--C-AATAT
446 AAT-AAATTTGCGACAAAATGGATTGTCATGCTAAACTACCATGCCAAAACTACCCAACAAATAT
* * * * * * * **
32840995 TTGCGTGAGA-GCAAAATTAAAAGGACATTTTTACTAGCATTTAAATTGGAACGAAATGGACTGT
510 TTGC-TTAAATGCAAAATTAAAAGAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTAC
**
32841059 CATGC
574 CACAC
* * * * * * * * *
32841064 CAAACTACTTTGCCAAAATTTGATTCAATGCAGAATTAATAGGACAATTCTATAAGCATTCAAAT
1 CAAACTACTCTG-CAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGTATTAAAAT
* ** * * *** *
32841129 TGGGATGAAATTAACTGTCAA-GCCAAACTACCTTAATAAAATTGATTGAATGATAAATTAAGAG
65 TGGGACGAAATGGACTGT-AATGCCAAACTGCCCTGCCAAAATTGATTGAATGATAAATTAAAAG
* * * * *
32841193 GACATTTCTATAAGCAA-TCAAATTGCGACGAAATGGACTGTCATGCCAAACTAACCAGCTAAAC
129 GACATTTCTATAAG-AATTCAATTTGAGACGAAATGGACGGTCATGCCAAACTAACAAGCCAAAC
* * * * *
32841257 TGCCCTGCTAAAATTTTG-TTCAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGG
193 TGCCCTGCCAAAA-TTTGATTGAATGCAAATTTAAGAGAACACTTTTATAAGCATTCAAATTAGG
* * * * * * * * *
32841321 ACGAAATGGACTGTCA-ATCTAAACTATCC-AGCCAAACTGCCCTGCCAATATTAATCAAAAGCA
257 ATGAAATAGACTATCATA-CAAAACTA-CCAAGCCAAACTGCCTTACCAAAATTGATTAAAAGCA
* * * *
32841384 AAAATAAGA---CATTTATATAAGGATTCAAATTGTGAAAAAATAGACTGTCATGCAAAACTACC
320 AAAATAAGAGGCCATTTATATAAGCATTCAAATTGGGACAAAATCGACTGTCATGCAAAACTACC
* * *
32841446 CAACCAAACTGCCTTGCCAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGC-ATA
385 CAACCAAACTGCCCTGCCAAAATTTGATTAAATAGAAAATTAACAGGACATTTCTATAAGCAATA
* ** * * * *
32841510 CAATTTGGGATGAAATGGATTGTCATG-T---CAACC-TACC----CT-GCC-A-AGAT-TTT-C
450 -AATTTGCGACAAAATGGATTGTCATGCTAAACTACCATGCCAAAACTACCCAACAAATATTTGC
* * ** **
32841561 TTGAATGCAAAA-TAAAGAGAACATTTCTATTAGCATTCAAATTGGAACGAAATGGACTTTCATG
514 TTAAATGCAAAATTAAA-AGAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTACCACA
32841625 C
578 C
* * * * * * *
32841626 CAAACTACTCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAGAT
1 CAAACTACTCTG-CAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGTATTAAAAT
** * *
32841691 TGGGACGAAATGGACTGTAATGGAAAACTACCCAGCCAAA
65 TGGGACGAAATGGACTGTAATGCCAAACTGCCCTGCCAAA
32841731 CCGCCCTGCC
Statistics
Matches: 3692, Mismatches: 695, Indels: 606
0.74 0.14 0.12
Matches are distributed among these distances:
538 52 0.01
539 4 0.00
541 2 0.00
544 1 0.00
546 1 0.00
547 1 0.00
549 3 0.00
550 48 0.01
551 60 0.02
552 5 0.00
553 1 0.00
554 51 0.01
555 17 0.00
556 5 0.00
557 1 0.00
558 2 0.00
559 1 0.00
560 66 0.02
561 45 0.01
562 153 0.04
563 53 0.01
564 306 0.08
565 83 0.02
566 78 0.02
567 76 0.02
568 52 0.01
569 2 0.00
570 4 0.00
571 2 0.00
573 2 0.00
574 1 0.00
575 5 0.00
576 76 0.02
577 406 0.11
578 733 0.20
579 534 0.14
580 324 0.09
581 11 0.00
582 4 0.00
583 16 0.00
584 3 0.00
585 3 0.00
586 5 0.00
587 12 0.00
588 10 0.00
589 27 0.01
590 108 0.03
591 131 0.04
592 102 0.03
593 4 0.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (578 bp):
CAAACTACTCTGCAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGTATTAAAATT
GGGACGAAATGGACTGTAATGCCAAACTGCCCTGCCAAAATTGATTGAATGATAAATTAAAAGGA
CATTTCTATAAGAATTCAATTTGAGACGAAATGGACGGTCATGCCAAACTAACAAGCCAAACTGC
CCTGCCAAAATTTGATTGAATGCAAATTTAAGAGAACACTTTTATAAGCATTCAAATTAGGATGA
AATAGACTATCATACAAAACTACCAAGCCAAACTGCCTTACCAAAATTGATTAAAAGCAAAAATA
AGAGGCCATTTATATAAGCATTCAAATTGGGACAAAATCGACTGTCATGCAAAACTACCCAACCA
AACTGCCCTGCCAAAATTTGATTAAATAGAAAATTAACAGGACATTTCTATAAGCAATAAATTTG
CGACAAAATGGATTGTCATGCTAAACTACCATGCCAAAACTACCCAACAAATATTTGCTTAAATG
CAAAATTAAAAGAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTACCACAC
Found at i:32839506 original size:87 final size:88
Alignment explanation
Indices: 32839267--32839542 Score: 285
Period size: 88 Copynumber: 3.1 Consensus size: 88
32839257 CGAACTACCC
** * * * * *
32839267 TGCCAAACTACCC-AACAAATATTTGCTTGAGTGCAAAATTAAAACGACATTTCTATTAGCATTT
1 TGCCAAACTACCCTGGCAAA-ATTTGATTGAATTCAAAATTAAAACGACATTTCTATAAGCATTC
*
32839331 AAA-TTGGAACGAAATGGACTGCCA
65 AAATTTGG-ACGAAATGGACTGTCA
** * * *
32839355 TGCCAAACTACTTTGGCAAAATTTGATTTAATTCAAAATTAAGACGACATTTCTATAAGTATTCA
1 TGCCAAACTACCCTGGCAAAATTTGATTGAATTCAAAATTAAAACGACATTTCTATAAGCATTCA
*
32839420 AATTTGGACGAAATTGACTGTCA
66 AATTTGGACGAAATGGACTGTCA
* * * *
32839443 AGCCAAACTGCCCT-GCTAAAA-TTGATTGAA-TGATAAATTAAAAGGACATTTCTATAAGCATT
1 TGCCAAACTACCCTGGC-AAAATTTGATTGAATTCA-AAATTAAAACGACATTTCTATAAGCATT
* *
32839505 C-AATTTGGGACGAAATGGACGGTTA
64 CAAATTT-GGACGAAATGGACTGTCA
32839530 TGCCAAACTACCC
1 TGCCAAACTACCC
32839543 AGCCAAACTG
Statistics
Matches: 155, Mismatches: 28, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
86 7 0.05
87 62 0.40
88 78 0.50
89 8 0.05
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29
Consensus pattern (88 bp):
TGCCAAACTACCCTGGCAAAATTTGATTGAATTCAAAATTAAAACGACATTTCTATAAGCATTCA
AATTTGGACGAAATGGACTGTCA
Found at i:32839840 original size:101 final size:100
Alignment explanation
Indices: 32839445--32840102 Score: 451
Period size: 101 Copynumber: 6.7 Consensus size: 100
32839435 GACTGTCAAG
* * *
32839445 CCAAACTGCCCTGCTAAAATTGATTGAATG-ATAAATTAAAAGGACATTTCTATAAGCATTC-AA
1 CCAAACTGCCCTGCCAAAATTGATTAAATGCA-AAATTAAGAGGACATTTCTATAAGCATTCAAA
* * * * *
32839508 TTTGGGACGAAATGGACGGTTATGCCAAACTACCCAG
65 TTT-GGACAAAATGGACTGTCATGCAAAACTACCCAA
* * * * * * *
32839545 CCAAACTGTCCTGCCAAAATTTGGTTGAATGCAAATTTAAGAGAACATTTTTTTAAGCATTCAAA
1 CCAAACTGCCCTGCCAAAA-TTGATTAAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
*** * * * *
32839610 TTTGGTTGAAATAGACTATTATACAAAACTA-CCAA
65 TTTGGACAAAATGGACTGTCATGCAAAACTACCCAA
* * * * * * * *
32839645 GCTAAATTGCCTTGCCAAAATTGATTAAAAGCAAAACTAAGAGGCCATTTATATAAGCGTTCAAA
1 -CCAAACTGCCCTGCCAAAATTGATTAAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* *
32839710 -TTGTGACAAAATCGACTGTCATGGAAAACTACCCAA
65 TTTG-GACAAAATGGACTGTCATGCAAAACTACCCAA
* * *
32839746 CCAGACTGCCCTGCCAAAATTTGATTAAATTG-AAAATTGAGAGGACATTTCTATAAGCAAT-AA
1 CCAAACTGCCCTGCCAAAA-TTGATTAAA-TGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * *
32839809 ATTTGCGACAAAATGGATTGTCATGCTAAACTA-CCATG
64 ATTTG-GACAAAATGGACTGTCATGCAAAACTACCCA-A
* * * ** * *
32839847 CCAAAACTACCCTGCTAATATTTTCTTAAATGCAAAATTCAGAGAACATTTCTATTAA-CATTCA
1 CC-AAACTGCCCTGCCAA-AATTGATTAAATGCAAAATTAAGAGGACATTTCTA-TAAGCATTCA
*
32839911 AA-TTGGAACGAAATGGAC--T-AT------C-A--C-A
63 AATTTGG-ACAAAATGGACTGTCATGCAAAACTACCCAA
* * * * * * * * *
32839936 CCAAACTACTCTGCCAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATACGTATTAAAAT
1 CCAAACTGCCCTGCCAAAATTGATTAAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
* ** * * *
32840001 TGGGATGAAATGGACTGTAATGCCAAACTACCCAG
66 TTGGACAAAATGGACTGTCATGCAAAACTACCCAA
* * * *
32840036 CCAAACCGCCCTGCCAAAATTAGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCAAA
1 CCAAACTGCCCTGCCAAAATT-GATTAAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
32840101 TT
65 TT
32840103 AGGAGGGAAT
Statistics
Matches: 435, Mismatches: 91, Indels: 63
0.74 0.15 0.11
Matches are distributed among these distances:
86 2 0.00
87 46 0.11
88 16 0.04
89 3 0.01
90 2 0.00
91 1 0.00
92 1 0.00
93 1 0.00
96 1 0.00
97 1 0.00
99 6 0.01
100 113 0.26
101 175 0.40
102 60 0.14
103 7 0.02
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (100 bp):
CCAAACTGCCCTGCCAAAATTGATTAAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
TTGGACAAAATGGACTGTCATGCAAAACTACCCAA
Found at i:32840027 original size:87 final size:87
Alignment explanation
Indices: 32839875--32840040 Score: 201
Period size: 87 Copynumber: 1.9 Consensus size: 87
32839865 TATTTTCTTA
* * * *
32839875 AATGCAAAATTCAGAGAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTATCACACCAA
1 AATGAAAAATTAAGAGAACATTTCTATTAACATTAAAATTGGAACGAAATGGACTATAACACCAA
* *
32839940 ACTACTCTGCCAAATTTGATTG
66 ACTACCCAGCCAAATTTGATTG
* * * **
32839962 AATGAAAAATTAAGAGAACATTTCTA-T-ACGTATTAAAATTGGGATGAAATGGACTGTAATGCC
1 AATGAAAAATTAAGAGAACATTTCTATTAAC--ATTAAAATTGGAACGAAATGGACTATAACACC
32840025 AAACTACCCAGCCAAA
64 AAACTACCCAGCCAAA
32840041 CCGCCCTGCC
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
85 2 0.03
86 1 0.02
87 63 0.95
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.26
Consensus pattern (87 bp):
AATGAAAAATTAAGAGAACATTTCTATTAACATTAAAATTGGAACGAAATGGACTATAACACCAA
ACTACCCAGCCAAATTTGATTG
Found at i:32840127 original size:101 final size:100
Alignment explanation
Indices: 32839946--32840130 Score: 228
Period size: 101 Copynumber: 1.8 Consensus size: 100
32839936 CCAAACTACT
* * * * * *
32839946 CTGCCAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATACGTATTAAAATTGGGATGAAA
1 CTGCCAAATTAGATTGAATGAAAAATTAAAAGAACATTTCTATAAGCATTAAAATTAGGAGGAAA
*
32840011 TGGACTGTAATGCCAAACTACCCAGCCAAACCGCC
66 TGGACTGTAAGGCCAAACTACCCAGCCAAACCGCC
* * *
32840046 CTGCCAAAATTAGATTGAATGCAAAATTAATAAG-ACATTTCTATAAGCATTCAAATTAGGAGGG
1 CTGCC-AAATTAGATTGAATGAAAAATTAA-AAGAACATTTCTATAAGCATTAAAATTAGGAGGA
* * *
32840110 AATTGATTGTCAGGCCAAACT
64 AATGGACTGTAAGGCCAAACT
32840131 GCCTTGCTAA
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
100 5 0.07
101 63 0.90
102 2 0.03
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.26
Consensus pattern (100 bp):
CTGCCAAATTAGATTGAATGAAAAATTAAAAGAACATTTCTATAAGCATTAAAATTAGGAGGAAA
TGGACTGTAAGGCCAAACTACCCAGCCAAACCGCC
Found at i:32840214 original size:87 final size:88
Alignment explanation
Indices: 32840035--32840217 Score: 224
Period size: 87 Copynumber: 2.1 Consensus size: 88
32840025 AAACTACCCA
* * *
32840035 GCCAAACCGCCCTGCCAAAATTAGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTACATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
* * * * *
32840100 ATTAGGAGGGAATTGATTGTCAG
66 ATTAGGACGAAATGGACTATCAG
* * * *
32840123 GCCAAACTGCCTTGCTAAAATT-CATTGAATGCAAAATTAAGAGGACATTTCTCTAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTACATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
* **
32840187 ATTGGGACGAAATGGACTATCTT
66 ATTAGGACGAAATGGACTATCAG
32840210 GCCAAACT
1 GCCAAACT
32840218 ACTCATCCAA
Statistics
Matches: 80, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
87 61 0.76
88 19 0.24
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (88 bp):
GCCAAACTGCCCTGCCAAAATTACATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
ATTAGGACGAAATGGACTATCAG
Found at i:32840318 original size:188 final size:184
Alignment explanation
Indices: 32839756--32840501 Score: 516
Period size: 188 Copynumber: 3.9 Consensus size: 184
32839746 CCAGACTGCC
* * * * * *
32839756 CTGCCAAAATTTGATTAAATTG-AAAATTGAGAGGACATTTCTATAAGCAATAAATTTGCGACAA
1 CTGCCAAAA-TTCATTGAA-TGAAAAATTAAGAGGACATTTCTATAAGCATTAAA-TTGGGACGA
* * * * ** *
32839820 AATGGATTGTCATGCTAAACTACCATGCCAAAACTACCCTGCTAATATTTTCTTAAATGCAAAAT
63 AATGGACTGTCATGCCAAACTACCAT-CC-AAACTACCCTGCCAAAATTTGATTGAATGC-AAAT
* * * *
32839885 TCA-GAGAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTATCACACCAAACTACT
125 TTATGAGGACATTTCTA-TAACATTCAAATTGGGACGAAAT-GACTGTCACACCAAACTACT
* * * * * *
32839946 CTGCCAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTATACGTATTAAAATTGGGATGAAA
1 CTGCCAAAATTCATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATT-AAATTGGGACGAAA
* * ** * *
32840011 TGGACTGTAATGCCAAACTACCCAGCCAAACCGCCCTGCCAAAATTAGATTGAATGCAAAATTAA
65 TGGACTGTCATGCCAAACTA-CCATCCAAACTACCCTGCCAAAATTTGATTGAATGC-AAATTTA
* * * * * ** *
32840076 T-AAGACATTTCTATAAGCATTCAAATTAGGAGGGAATTGATTGTCAGGCCAAACTGC-
128 TGAGGACATTTCTATAA-CATTCAAATTGGGA-CGAAATGACTGTCACACCAAACTACT
* * *
32840133 CTTGCTAAAATTCATTGAATGCAAAATTAAGAGGACATTTCTCTAAGCATTCAAATTGGGACGAA
1 C-TGCCAAAATTCATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATT-AAATTGGGACGAA
* * * * * *
32840198 ATGGACTATCTTGCCAAACTACTCATCCAAACTTCCCTACCAAAATTTGGTTGAATGCAAATTTT
64 ATGGACTGTCATGCCAAACTAC-CATCCAAACTACCCTGCCAAAATTTGATTGAATGCAAATTTA
* * **
32840263 TGAGGACATTTTTATAATTATTCAAATTGGGACGAAATGAACTGTCATTCCAAACTACCT
128 TGAGGACATTTCTATAA-CATTCAAATTGGGACGAAATG-ACTGTCACACCAAACTA-CT
* * * *
32840323 AGCAAACAGCCCTGCCAAAATTGATTGAAAGCAAAAA-TAAGAGGACGTTTATATAAGCATTCAA
1 -----------CTGCCAAAATTCATTGAATG-AAAAATTAAGAGGACATTTCTATAAGCATT-AA
* * * ** * *
32840387 ATTGCGACAAAATGG-CATATCATGGAAAACTACCTAACCAAACTACTCC-GCCAAAATTTGCTT
53 ATTGGGACGAAATGGAC-TGTCATGCCAAACTACC-ATCCAAACTAC-CCTGCCAAAATTTGATT
* * * * * *
32840450 AAATGGAAAATTAAGAGGACATTTTTATAAGCATTCAATTTGGGACGAAATG
115 GAATGCAAATTTATGAGGACATTTCTATAA-CATTCAAATTGGGACGAAATG
32840502 GATTGCCATG
Statistics
Matches: 439, Mismatches: 90, Indels: 44
0.77 0.16 0.08
Matches are distributed among these distances:
187 16 0.04
188 205 0.47
189 64 0.15
190 14 0.03
199 2 0.00
200 131 0.30
201 7 0.02
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (184 bp):
CTGCCAAAATTCATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTAAATTGGGACGAAAT
GGACTGTCATGCCAAACTACCATCCAAACTACCCTGCCAAAATTTGATTGAATGCAAATTTATGA
GGACATTTCTATAACATTCAAATTGGGACGAAATGACTGTCACACCAAACTACT
Found at i:32840501 original size:101 final size:101
Alignment explanation
Indices: 32840124--32840617 Score: 376
Period size: 101 Copynumber: 4.9 Consensus size: 101
32840114 GATTGTCAGG
* * * * * * *
32840124 CCAAACTGCCTTGCTAAAA-TTCATTGAATGCAAAATTAAGAGGACATTTCTCTAAGCATTCAAA
1 CCAAACTACCCTGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
* *
32840188 TTGGGACGAAATGGACTATCTTGCCAAACTA-CTCAT
66 TTGGGACGAAATGGACTATCATGCCAAACTACCT-AA
* * * * * ** **
32840224 CCAAACTTCCCTACCAAAATTTGGTTGAATGCAAATTTTTGAGGACATTTTTATAATTATTCAAA
1 CCAAACTACCCTGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
* * *
32840289 TTGGGACGAAATGAACTGTCATTCCAAACTACCT-A
66 TTGGGACGAAATGGACTATCATGCCAAACTACCTAA
* * * *
32840324 GCAAAC-AGCCCTGCCAAAA-TTGATTGAAA-GCAAAAATAAGAGGACGTTTATATAAGCATTCA
1 CCAAACTA-CCCTGCCAAAATTTGATT-AAATGCAAAATTAAGAGGACATTTTTATAAGCATTCA
* * **
32840386 AATTGCGACAAAATGG-CATATCATGGAAAACTACCTAA
64 AATTGGGACGAAATGGAC-TATCATGCCAAACTACCTAA
* *
32840424 CCAAACTACTCC-GCCAAAATTTGCTTAAATGGAAAATTAAGAGGACATTTTTATAAGCATTCAA
1 CCAAACTAC-CCTGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * ** * * *
32840488 TTTGGGACGAAATGGATTGCCATGACAAACTGCCCT-G
65 ATTGGGACGAAATGGACTATCATGCCAAACT-ACCTAA
* * ** * * ** * * * *
32840525 CCAAACTACCCAGCCAATATTTGCCTGAATGCAAAATAAAGAAAAAATGTCTATTAGCATTCAAA
1 CCAAACTACCCTGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
* * ** *
32840590 TTGGAACAAAATAAACTGTCATGCCAAA
66 TTGGGACGAAATGGACTATCATGCCAAA
32840618 ATTTGATTTA
Statistics
Matches: 308, Mismatches: 73, Indels: 25
0.76 0.18 0.06
Matches are distributed among these distances:
98 1 0.00
99 57 0.19
100 51 0.17
101 194 0.63
102 5 0.02
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (101 bp):
CCAAACTACCCTGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
TTGGGACGAAATGGACTATCATGCCAAACTACCTAA
Found at i:32840828 original size:101 final size:98
Alignment explanation
Indices: 32840686--32840955 Score: 290
Period size: 101 Copynumber: 2.7 Consensus size: 98
32840676 TTGTCTGTTA
* * *
32840686 AGCCAAACTGCCCTGCTAAAAGTGATTGAATG-ATAAATTAAGAGGACGTTTATATAAGAATTCA
1 AGCCAAACTG-CCTGCCAAAATTGATTGAATGCA-AAATTAAGAGGACATTTATATAA-AATTCA
* * ** *
32840750 AATTGGGATGAAATGGGTTGCAATGACAAACTACCC
63 AATTGAGACGAAATGGACTACAATGACAAACTACCC
* * * *
32840786 AGCCAAACTGCCATGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAATCATTCA
1 AGCCAAACTGCC-TGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTATATAA-AATTCA
** **
32840851 AATTGAGACGAAATGGACTATTATTCCAAACTACCC
63 AATTGAGACGAAATGGACTACAATGACAAACTACCC
* * *
32840887 AGCCAAACTGCTCTGCCAAAATTGATTGAAAGCAAAAATAAGAGGAAATTTATATAAATATTCAA
1 AGCCAAACTGC-CTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTATATAAA-ATTCAA
32840952 ATTG
64 ATTG
32840956 TAACAAATAG
Statistics
Matches: 141, Mismatches: 24, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
99 2 0.01
100 57 0.40
101 80 0.57
102 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (98 bp):
AGCCAAACTGCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTATATAAAATTCAAAT
TGAGACGAAATGGACTACAATGACAAACTACCC
Found at i:32841078 original size:88 final size:87
Alignment explanation
Indices: 32840900--32841245 Score: 299
Period size: 87 Copynumber: 4.0 Consensus size: 87
32840890 CAAACTGCTC
* * * * * * ** *
32840900 TGCCAAAATTGATTGAAAGCAAAAATAAGAGGAAATTTATATAAATATTCAAATTGTAAC-AAAT
1 TGCCAAATTTGATTGAATGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGAACGAAAT
* * *
32840964 AGACTGTCATGCAAAACTGCGC-
66 GGACTGTCATGCCAAACTAC-CT
** * *
32840986 TGCCAATATTTGCGTGAGA-GCAAAATTAAAAGGACATTTTTACT-AGCATTTAAATTGGAACGA
1 TGCCAA-ATTTGATTGA-ATGCAAAATTAAAAGGACATTTCTA-TAAGCATTCAAATTGGAACGA
*
32841049 AATGGACTGTCATGCCAAACTACTT
63 AATGGACTGTCATGCCAAACTACCT
* * * * * *
32841074 TGCCAAAATTTGATTCAATGCAGAATTAATAGGACAATTCTATAAGCATTCAAATTGGGATGAAA
1 TGCC-AAATTTGATTGAATGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGAACGAAA
** *
32841139 TTAACTGTCAAGCCAAACTACCT
65 TGGACTGTCATGCCAAACTACCT
*** * * *
32841162 TAATAAAATTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCAATCAAATTGCG-ACGAA
1 TGCCAAATTTGATTGAATGCA-AAATTAAAAGGACATTTCTATAAGCATTCAAATTG-GAACGAA
32841225 ATGGACTGTCATGCCAAACTA
64 ATGGACTGTCATGCCAAACTA
32841246 ACCAGCTAAA
Statistics
Matches: 208, Mismatches: 42, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
86 7 0.03
87 107 0.51
88 92 0.44
89 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (87 bp):
TGCCAAATTTGATTGAATGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGAACGAAAT
GGACTGTCATGCCAAACTACCT
Done.