Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 105 of 153
Found at i:32841485 original size:97 final size:97
Alignment explanation
Indices: 32841193--32842049 Score: 394
Period size: 101 Copynumber: 8.8 Consensus size: 97
32841183 AAATTAAGAG
* * * *
32841193 GACATTTCTATAAGCAATCAAATTGCGACGAAATGGACTGTCATGCCAAACTAACCAGCTAAACT
1 GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATGCAAAACTAACCAGCCAAACT
* * * *
32841258 GCCCTGCTAAAATTTTG-TTCAATGCAAATTTAAGAG
66 GCCCTGCCAAAA-TTTGATTAAATG-AAA---AATAA
* * * *
32841294 GACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCAAT-CTAAACTATCCAGCCAAAC
1 GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTC-ATGCAAAACTAACCAGCCAAAC
* * * *
32841358 TGCCCTGCCAATA-TTAATCAAAAGCAAAAATAA
65 TGCCCTGCCAAAATTTGATTAAATG-AAAAATAA
* * ** * * *
32841391 GACATTTATATAAGGATTCAAATTGTGAAAAAATAGACTGTCATGCAAAACTACCCAACCAAACT
1 GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATGCAAAACTAACCAGCCAAACT
* *
32841456 GCCTTGCCAAAATTTGATTAAATGGAAAATTAAGA
66 GCCCTGCCAAAATTTGATTAAAT-GAAAAAT-A-A
* * * * * * * * *
32841491 GGACATTTCTATAAGCATACAATTTGGGATGAAATGGATTGTCATGTC-AACCTACCCTGCCAAG
1 -GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATG-CAAAACTAACCAGCCAA-
* ** * * *
32841555 ATTTTCTTG----AA--TGCA--AAAT-AAAGA-GA
63 ACTGCCCTGCCAAAATTTG-ATTAAATGAAAAATAA
* *
32841581 -ACATTTCTATTAGCATTCAAATTG-GAACGAAATGGACT-T--T-C---A-T-----GCCAAAC
1 GACATTTATATAAGCATTCAAATTGCG-ACGAAATGGACTGTCATGCAAAACTAACCAGCCAAAC
* * * *
32841631 TACTCTGCCAATATTTGATTGAATGAAAAATTAAGA
65 TGCCCTGCCAAAATTTGATTAAATGAAAAA-T-A-A
* * * * * * *
32841667 GGACATTTTTGTAAGCATTCAGATTGGGACGAAATGGACTGTAATGGAAAACTACCCAGCCAAAC
1 -GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATGCAAAACTAACCAGCCAAAC
* * * ***
32841732 CGCCCTGCCAAAATATGAATT-AATGCACTTTAAGA
65 TGCCCTGCCAAAATTTG-ATTAAATGAAAAAT-A-A
* * * * * * *
32841767 GAACATTTTTATAAGCATTCAAATTGGGATGAAATGGACTATAATGAAAAACTACCCAGCCAAAC
1 G-ACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATGCAAAACTAACCAGCCAAAC
* *
32841832 TGCCATGCCAAAA-TTGATTGAATGCAAAAATAGAA
65 TGCCCTGCCAAAATTTGATTAAATG-AAAAAT--AA
* * * * ** * *
32841867 GAATATTTATATAAGCTTTCAAATTGAGACAAAATGGGTTGTCATGCAAAACTACCCAACCAAAC
1 G-ACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATGCAAAACTAACCAGCCAAAC
** * *
32841932 TGCCCTATCAAAATTTGATTGAATGTAAAATTATGAG
65 TGCCCTGCCAAAATTTGATTAAATG-AAAA--AT-AA
* * * * * *
32841969 GACATTTCTATAAGCATTCAATTTGGGAAGAAATGGACTATCATGTC-AAACT-ACCTTGCCAAA
1 GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATG-CAAAACTAACC-AGCCAAA
* *
32842032 CTTCCCTGCCAATATTTG
64 CTGCCCTGCCAAAATTTG
32842050 CTTGAGTGCA
Statistics
Matches: 582, Mismatches: 123, Indels: 102
0.72 0.15 0.13
Matches are distributed among these distances:
74 4 0.01
75 5 0.01
78 1 0.00
79 1 0.00
80 3 0.01
81 3 0.01
82 4 0.01
83 1 0.00
85 1 0.00
86 1 0.00
87 2 0.00
88 63 0.11
89 2 0.00
90 1 0.00
91 1 0.00
93 3 0.01
95 5 0.01
96 5 0.01
97 67 0.12
98 17 0.03
99 11 0.02
100 151 0.26
101 212 0.36
102 16 0.03
103 2 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (97 bp):
GACATTTATATAAGCATTCAAATTGCGACGAAATGGACTGTCATGCAAAACTAACCAGCCAAACT
GCCCTGCCAAAATTTGATTAAATGAAAAATAA
Found at i:32841613 original size:88 final size:88
Alignment explanation
Indices: 32841449--32841729 Score: 303
Period size: 88 Copynumber: 3.2 Consensus size: 88
32841439 AACTACCCAA
* * * * * * *
32841449 CCAAACTGCCTTGCCAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATACAAT
1 CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
*
32841514 TTGGGATGAAATGGA-TTGTCATG
66 TTGGGACGAAATGGACTT-TCATG
* * ** * * * *
32841537 TCAACCTACCCTGCCAAGATTTTCTTGAATGCAAAATAAAGAGAACATTTCTATTAGCATTCAAA
1 CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
*
32841602 TTGGAACGAAATGGACTTTCATG
66 TTGGGACGAAATGGACTTTCATG
* * * * *
32841625 CCAAACTACTCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAGA
1 CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* *
32841690 TTGGGACGAAATGGACTGTAATG
66 TTGGGACGAAATGGACTTTCATG
** *
32841713 GAAAACTACCCAGCCAA
1 CCAAACTACCCTGCCAA
32841730 ACCGCCCTGC
Statistics
Matches: 156, Mismatches: 36, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
88 154 0.99
89 2 0.01
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (88 bp):
CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
TTGGGACGAAATGGACTTTCATG
Found at i:32841801 original size:100 final size:98
Alignment explanation
Indices: 32841624--32842110 Score: 377
Period size: 100 Copynumber: 4.8 Consensus size: 98
32841614 GGACTTTCAT
* * * * * * *
32841624 GCCAAACTACTCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAG
1 GCCAAACTGCCCTGCCAA-AATTGATTGAATG--CAATTAAGAGAACATTTTTATAAGCATTCAA
* *
32841689 ATTGGGACGAAATGGACTGTAATGGAAAACTACCCA
63 ATTGGGACGAAATGGACTATAATGAAAAACTACCCA
* *
32841725 GCCAAACCGCCCTGCCAAAATATGAATT-AATGCACTTTAAGAGAACATTTTTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAAT-TG-ATTGAATGCA-ATTAAGAGAACATTTTTATAAGCATTCAA
*
32841789 ATTGGGATGAAATGGACTATAATGAAAAACTACCCA
63 ATTGGGACGAAATGGACTATAATGAAAAACTACCCA
* ** * * *
32841825 GCCAAACTGCCATGCCAAAATTGATTGAATGCAAAAATAGAAGAATATTTATATAAGCTTTCAAA
1 GCCAAACTGCCCTGCCAAAATTGATTGAATGCAATTA-AG-AGAACATTTTTATAAGCATTCAAA
* * ** * * *
32841890 TTGAGACAAAATGGGTTGTCATGCAAAACTACCCA
64 TTGGGACGAAATGGACTATAATGAAAAACTACCCA
* ** * * * *
32841925 ACCAAACTGCCCTATCAAAATTTGATTGAATGTAAAATTATGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAA-TTGATTGAATG--CAATTAAGAGAACATTTTTATAAGCATTCAA
* * * ** **
32841990 TTTGGGAAGAAATGGACTATCATGTCAAACTACCTT
63 ATTGGGACGAAATGGACTATAATGAAAAACTACCCA
* * * * * * *
32842026 GCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGAC-TTTTCCATTAA-CATTT
1 GCCAAACTGCCCTGCCAA-AATTGATTGAATGC--AATTAAGAGAACATTTT-TA-TAAGCATTC
* *
32842089 AAATTGGAACGAAATAGACTAT
61 AAATTGGGACGAAATGGACTAT
32842111 CATGCCAAAC
Statistics
Matches: 305, Mismatches: 67, Indels: 28
0.76 0.17 0.07
Matches are distributed among these distances:
98 4 0.01
99 11 0.04
100 146 0.48
101 133 0.44
102 8 0.03
103 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (98 bp):
GCCAAACTGCCCTGCCAAAATTGATTGAATGCAATTAAGAGAACATTTTTATAAGCATTCAAATT
GGGACGAAATGGACTATAATGAAAAACTACCCA
Found at i:32842013 original size:101 final size:101
Alignment explanation
Indices: 32841624--32842190 Score: 483
Period size: 101 Copynumber: 5.8 Consensus size: 101
32841614 GGACTTTCAT
* * * * * * *
32841624 GCCAAACTACTCTGCCAATATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAG
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
32841689 ATTGGGACGAAATGGACTGTAATGGAAAACTACCCA
66 ATTGGGAAGAAATGGACTATCATGCAAAACTACCCA
* * ** * *
32841725 GCCAAACCGCCCTGCCAAAATATGAATT-AATGC-ACTTTAAGAGAACATTTTTATAAGCATTCA
1 GCCAAACTGCCCTGCCAAAATTTG-ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
32841788 AATTGGGATGAAATGGACTATAATGAAAAACTACCCA
65 AATTGGGAAGAAATGGACTATCATGCAAAACTACCCA
* * * * * *
32841825 GCCAAACTGCCATGCCAAAA-TTGATTGAATGCAAAAAT-AGAAGAATATTTATATAAGCTTTCA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCA
* ** *
32841888 AATTGAGACA-AAATGGGTTGTCATGCAAAACTACCCA
65 AATTGGGA-AGAAATGGACTATCATGCAAAACTACCCA
* ** * *
32841925 ACCAAACTGCCCTATCAAAATTTGATTGAATGTAAAATTATGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* **
32841990 TTTGGGAAGAAATGGACTATCATGTC-AAACTACCTT
66 ATTGGGAAGAAATGGACTATCATG-CAAAACTACCCA
* * * * * * *
32842026 GCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGACTTTTCCATTAA-CATTTA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCATTCA
* *
32842090 AATT-GGAACGAAATAGACTATCATGCCAAACT-----
65 AATTGGGAA-GAAATGGACTATCATGCAAAACTACCCA
* *
32842122 -----ACT---CTGCCAAAATTTGATTTAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
*
32842179 ATTGGGATGAAA
66 ATTGGGAAGAAA
32842191 CTGACTGACA
Statistics
Matches: 381, Mismatches: 71, Indels: 41
0.77 0.14 0.08
Matches are distributed among these distances:
87 3 0.01
88 49 0.13
89 3 0.01
91 3 0.01
98 3 0.01
99 9 0.02
100 149 0.39
101 154 0.40
102 8 0.02
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (101 bp):
GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
ATTGGGAAGAAATGGACTATCATGCAAAACTACCCA
Found at i:32842181 original size:88 final size:86
Alignment explanation
Indices: 32842025--32842300 Score: 238
Period size: 88 Copynumber: 3.2 Consensus size: 86
32842015 CAAACTACCT
* * * * * * * *
32842025 TGCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGACTTTTCCATTAA-CATTT
1 TGCCAAAC-TACCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTA-TAAGCATTC
*
32842089 AAATTGGAACGAAATAGACTATCA
64 AAATTGGGACGAAAT-GACTATCA
*
32842113 TGCCAAACTACTCTGCCAAAATTTGATTTAATGCAAAATTAAGAAGACATTTCTATAAGCATTCA
1 TGCCAAACTAC-CTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCA
*
32842178 AATTGGGATGAAACTGACTGA-CA
65 AATTGGGACGAAA-TGACT-ATCA
* * * * * *
32842201 AGCCAAACCACCTTGCTAAAA-TTGATTGATTG-ATAAATTAAGATA-ACATTTTTACAAGCATT
1 TGCCAAACTACC-TGCCAAAATTTGATTGAATGCA-AAATTAAGA-AGACATTTCTATAAGCATT
* * *
32842263 CAAATTGGGACAAAATGGACTGTAA
63 CAAATTGGGACGAAAT-GACTATCA
*
32842288 TGCCAAACAACCT
1 TGCCAAACTACCT
32842301 AGTCTAATTG
Statistics
Matches: 155, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
86 3 0.02
87 67 0.43
88 83 0.54
89 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (86 bp):
TGCCAAACTACCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
ATTGGGACGAAATGACTATCA
Found at i:32842484 original size:88 final size:82
Alignment explanation
Indices: 32842346--32842572 Score: 249
Period size: 82 Copynumber: 2.7 Consensus size: 82
32842336 AAATTAAAAA
* * * * *
32842346 AGGACATTTTTATTAGCATTTAAATTGGAATGAAATGGACTATCATGCCAAACTACTCTGGCAAA
1 AGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTAC-CTGGCAAA
32842411 ATTTGATTTAATGCA-AAATTAAG
65 A-TTG----AATG-ATAAATTAAG
** * * * * * *
32842434 AGGACATTTCTATAAGCATTCAAATTGGGACAAAATTGTCTGTCAAGCCAAACTGCCTTGCTAAA
1 AGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACCTGGCAAAA
32842499 TTGAATGATAAATTAAG
66 TTGAATGATAAATTAAG
* *
32842516 AGGACATTTCTACAAGCATTCAAATTGGGATGAAATGGGCTGTCATGCCAAACTACC
1 AGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACC
32842573 AAGCCAAACA
Statistics
Matches: 118, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
81 1 0.01
82 62 0.53
86 3 0.03
87 7 0.06
88 45 0.38
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (82 bp):
AGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACCTGGCAAAA
TTGAATGATAAATTAAG
Found at i:32842813 original size:188 final size:183
Alignment explanation
Indices: 32842407--32842858 Score: 476
Period size: 188 Copynumber: 2.4 Consensus size: 183
32842397 ACTACTCTGG
* * * *
32842407 CAAAATTTGATTTAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATTG
1 CAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGG
* * *** * * * * *
32842472 TCTGTCAAGCCAAACTGCCTTGCTAAATTGAATGATAAATTAAGAGGACATTTCTACAAGCATTC
66 ACTGTCAAGCCAAACTACCCAACCAAATTGAAAGAAAAAATAAGAGGACATTTATACAAGCATTC
* ** ** * *
32842537 AAATTGGGATGAAATGGGCTGTCATGCCAAACTACCAAGCCAAACAGCCCTGC
131 AAATTGCGACAAAATGGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGC
* * * *
32842590 CAAAATTTTG-TTCAATACG-AATTTAAGAGGACATTTTTATAAGCATTCAAATTAGGACAAAAT
1 CAAAA-TTTGATTAAAT-GGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAAT
*** * *
32842653 GGACTGTCTTTCCAAATTACCCAACCAAACTTGATAGAAAGAAAAAATAAGAGGACATTTATATA
64 GGACTGTCAAGCCAAACTACCCAACCAAA--T--T-GAAAGAAAAAATAAGAGGACATTTATACA
* *
32842718 AGCATTCAAATTGCGACAAAATGGAATGTCATGCAAAACTGCCAAACCAAACTGCCCTGC
124 AGCATTCAAATTGCGACAAAATGGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGC
* * * *
32842778 CGAAATTTGATTAAATGGAAAATTAAGATGACATTTCTATAAGCATTCAATTTAGGACTAAATGG
1 CAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGG
* * *
32842843 ATTGTCATGTCAAACT
66 ACTGTCAAGCCAAACT
32842859 GCCCTGCCAA
Statistics
Matches: 216, Mismatches: 44, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
183 69 0.32
184 4 0.02
185 1 0.00
187 6 0.03
188 136 0.63
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (183 bp):
CAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGG
ACTGTCAAGCCAAACTACCCAACCAAATTGAAAGAAAAAATAAGAGGACATTTATACAAGCATTC
AAATTGCGACAAAATGGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGC
Found at i:32842889 original size:188 final size:187
Alignment explanation
Indices: 32842426--32842919 Score: 466
Period size: 188 Copynumber: 2.6 Consensus size: 187
32842416 ATTTAATGCA
* * * * *
32842426 AAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATTGTCTGTCAAG-CCAAACTGC
1 AAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGGACTGTC-TGTCCAAACTAC
*** * * * * **
32842490 CTTGCTAAA--T--T-GAATGATAAATTAAGAGGACATTTCTACAAGCATTCAAATTGGGATGAA
65 CCAACCAAACTTGATAGAATGA-AAAATAAGAGGACATTTCTATAAGCATTCAAATTGCGACAAA
** * * *
32842550 ATGGGCTGTCATGCCAAACTACCAAGCCAAACAGCCCTGCCAAAATTTTGTTCAATACG
129 ATGGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGCCAAAATTTTGTTAAATACG
* * * *
32842609 AATTTAAGAGGACATTTTTATAAGCATTCAAATTAGGACAAAATGGACTGTCTTTCCAAATTACC
1 AAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGGACTGTCTGTCCAAACTACC
* *
32842674 CAACCAAACTTGATAGAAAGAAAAAATAAGAGGACATTTATATAAGCATTCAAATTGCGACAAAA
66 CAACCAAACTTGATAGAATG-AAAAATAAGAGGACATTTCTATAAGCATTCAAATTGCGACAAAA
* * * *
32842739 TGGAATGTCATGCAAAACTGCCAAACCAAACTGCCCTGCCGAAA-TTTGATTAAAT-GG
130 TGGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGCCAAAATTTTG-TTAAATACG
* * * * *
32842796 AAAATTAAGATGACATTTCTATAAGCATTCAATTTAGGACTAAATGGATTGTCATGT-CAAACTG
1 -AAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGGACTGTC-TGTCCAAACTA
** * * * * * * *
32842860 CCCTGCCAATATTTGCTTGGATGAAAAATAAAGAGAACATTTCTATTAGCATTAAAATTG
64 CCCAACCAA-ACTTGATAGAATGAAAAAT-AAGAGGACATTTCTATAAGCATTCAAATTG
32842920 GAACGAAATA
Statistics
Matches: 250, Mismatches: 49, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
183 59 0.24
185 1 0.00
187 6 0.02
188 147 0.59
189 37 0.15
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (187 bp):
AAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACAAAATGGACTGTCTGTCCAAACTACC
CAACCAAACTTGATAGAATGAAAAATAAGAGGACATTTCTATAAGCATTCAAATTGCGACAAAAT
GGAATGTCATGCAAAACTACCAAACCAAACAGCCCTGCCAAAATTTTGTTAAATACG
Found at i:32843035 original size:88 final size:86
Alignment explanation
Indices: 32842765--32843037 Score: 282
Period size: 88 Copynumber: 3.1 Consensus size: 86
32842755 ACTGCCAAAC
* * * * *
32842765 CAAACTGCCCTGCCGAA-ATTTGATTAAATGGAAAATTAAGATGACATTTCTATAAGCATTCAAT
1 CAAACTACCCTGCC-AATATTTGATTGAAT-GAAAATTAAGAGGACATTTCTATAAGCATTAAAA
* *
32842829 TTAGGACTAAATGGATTGTCATG
64 TTGGGACGAAATGGATTGTCATG
* * * * * *
32842852 TCAAACTGCCCTGCCAATATTTGCTTGGATGAAAAATAAAGAGAACATTTCTATTAGCATTAAAA
1 -CAAACTACCCTGCCAATATTTGATTGAATG-AAAATTAAGAGGACATTTCTATAAGCATTAAAA
* *
32842917 TTGGAACGAAATAGACTT-TCATG
64 TTGGGACGAAATGGA-TTGTCATG
* *
32842940 CCAAACTACTCC-GCCAATATTTGATTGAATGAAAAGTTAAGAGGACATTTCTGTAAGCATTTAA
1 -CAAACTAC-CCTGCCAATATTTGATTGAATGAAAA-TTAAGAGGACATTTCTATAAGCATTAAA
*
32843004 ATTGGGACGAAATGGATTGTAATG
63 ATTGGGACGAAATGGATTGTCATG
32843028 CAAAACTACC
1 C-AAACTACC
32843038 TAGCCAAACC
Statistics
Matches: 153, Mismatches: 25, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
87 11 0.07
88 138 0.90
89 4 0.03
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (86 bp):
CAAACTACCCTGCCAATATTTGATTGAATGAAAATTAAGAGGACATTTCTATAAGCATTAAAATT
GGGACGAAATGGATTGTCATG
Found at i:32843419 original size:100 final size:97
Alignment explanation
Indices: 32843135--32845296 Score: 765
Period size: 100 Copynumber: 22.4 Consensus size: 97
32843125 CAGGCCAAAG
* * * * *
32843135 TGCCCTGCTAAAATTCATTTAAAGCAAAATTAATAGGACATTTTTATAAGCATTCAAATTGGGAC
1 TGCCCTGCCAAAATTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* * *
32843200 TAAATGGATTGTCATGCAAAACTACCCAGCCTAAT
65 AAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* * *** * * *
32843235 TTCCCTGCCACAATTTGATTGAATGCACTTTAAGAGGACATTTTTATCAGCATTCAGATTGAGAC
1 TGCCCTGCCA-AAATTGATTGAATGCAAAATAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* * * * * * *
32843300 GAAATAGACTATAAAGCAAAATTATGCAGCCAACC
65 AAAATGGACTGTCATGCAAAACTAT-CAGCCAA-T
* * * *
32843335 TGCCCTGCCAAAATTGATTGAATGCAAAGATAGGAGAATATTTCTATAAGCATTCAAATTGGGAC
1 TGCCCTGCCAAAATTGATTGAATGCAAA-ATAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* *
32843400 AAAATGGGCTGTCATGCAAAACTACTCAACCAAAT
65 AAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* * *
32843435 TGCCTTGTCAAAATTTGATTGTATGCAAAATTAAGAGGACATTTTTATAAGCATTC-AATTCGGG
1 TGCCCTGCCAAAA-TTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATT-GGG
* * * *
32843499 A-AGAAATGGTCTGTCATGTC-AAACTACCCTGCCAAAC
63 ACA-AAATGGACTGTCATG-CAAAACTA-TCAGCC-AAT
* * * * * *
32843536 TGCCCTGCCAATATTTGCTTGAGTGTAAAATTAAGAGAACATTTCTATTAATG-ATT-AAATTGG
1 TGCCCTGCCAA-AATTGATTGAATGCAAAA-TAAGAGGACATTTTTA-TAA-GCATTCAAATTGG
* * * * *
32843599 AACGAAATGGAATGTCAAGCCAAAC--T-A--C---
62 GACAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * * * *
32843627 T---CTGTCAAAATTTGATTTAATGCAAAATTAAAAAGACATTTCTATAAGCATTCAAATTGGGA
1 TGCCCTGCCAAAA-TTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGA
* ** * *
32843689 CAACATTTACTGT-A-GC---GCCA--AGCC---
64 CAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * * * * * **
32843713 -GCCCTACTAAAATTAATTGATTG-ATAAATTAAAATGACATTTCAATAAGCATTCAAAATTGGG
1 TGCCCTGCCAAAATTGATTGAATGCA-AAA-TAAGAGGACATTTTTATAAGCATTC-AAATTGGG
* * * *
32843776 ACGAAATGGACTGTCATGCCAAACTACCAAGCCAAGC
63 ACAAAATGGACTGTCATGCAAAACTATC-AGCCAA-T
* * * * * * *
32843813 TGCCCTACTAATATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGTATTCAAATTGGAA
1 TGCCCTGCCAA-AATTGATTGAATGCAAA-ATAAGAGGACATTTTTATAAGCATTCAAATTGGGA
** * * * *
32843878 TGAAATGGGCTGTCATGCCAAACTACCCAGCCAAAC
64 CAAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* * ** * * * * * *
32843914 TGCCCTGCCAAAATTTGATTGAACGTAAAATTAAGAGGATGTTTCTATGAGTAATCAATTTGGAA
1 TGCCCTGCCAAAA-TTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGA
* * ** * *
32843979 CGAAATGGATTGTCATGTTAAACT-TCCCTAGCAAAC
64 CAAAATGGACTGTCATGCAAAACTAT--C-AGCCAAT
* * * * * * * *
32844015 TGCCCTGCCAATATT-TTCCTCAATGTAAAATTAAGAGCACATTTCTATTAGGATTCAAATTGGG
1 TGCCCTGCCAAAATTGAT--TGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGG
* * *
32844079 ACAAAATGCACTATCATGC-CAAC--T-A--C---
63 ACAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * * *
32844105 T---CTGCCAAAATTTGATTTAATGCAAAATTAAGAGAACAATTCTATAAGCATTCAAATTGGGA
1 TGCCCTGCCAAAA-TTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGA
** * * * * * * *
32844167 CAAAATTAATTGTTAAGCTAAACTACCCAACCAAAC
64 CAAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* * * * * **
32844203 TGCCCTGCCAAAATTGATTGAAAGTAAAAATAAGAGGAAATTTATATCAGCATTCAAATTGCAAC
1 TGCCCTGCCAAAATTGATTGAATG-CAAAATAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* * * * *
32844268 AAAATGAACTGTCACGCAAAACTACCCAACCAAAC
65 AAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* ** * * * * *
32844303 TGCCCCTACCAATGTTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTTAATTTGGG
1 TG-CCCTGCCAA-AATTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGG
* *
32844368 ACGAAATGGA-T-TC-T-C---A-TATCA---AAC
63 ACAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * * * * * * ** *
32844392 TACCCTGTCAATATTTACTTGAATGCACAATAAAGAGAACATTTCTATTTGCATTCAAATTGGAA
1 TGCCCTGCCAAAATTGA-TTGAATGCAAAAT-AAGAGGACATTTTTATAAGCATTCAAATTGGGA
* * * *
32844457 CGAAATAGATTGTCATGCCAAACTAT-------T
64 CAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * *
32844484 T---C-ACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAAATTGGGA
1 TGCCCTGCCAAAA-TTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGA
* *
32844545 -AAAATGGACTGTAATG-----C---CA---AAC
64 CAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * *
32844567 TGCCCTGCCAAAATTAGATTGAATGCAATATTAAGAAGACATTTCTATAAGCATTCAAATTGGGA
1 TGCCCTGCCAAAATT-GATTGAATGCAA-AATAAGAGGACATTTTTATAAGCATTCAAATTGGGA
*** * * *
32844632 GGGAATTGAC--T-AT-C-AGA--A-CA---AAC
64 CAAAATGGACTGTCATGCAAAACTATCAGCCAAT
* * * * * *
32844655 TGCCCTGCTAAAATTCATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTAGGAT
1 TGCCCTGCCAAAATTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* * *
32844720 GAAATGGACTGTCATTCGAAACTATCAAGCCAAAT
65 AAAATGGACTGTCATGCAAAACTATC-AGCC-AAT
** * *
32844755 TGCCCTGCCAAAATTTGATTGAATG-AACTTTAAGAGGATA-TTTTATAAGCATTCAAATTAGGA
1 TGCCCTGCCAAAA-TTGATTGAATGCAA-AATAAGAGGACATTTTTATAAGCATTCAAATTGGGA
* * * * *
32844818 CAAAATGGACTGTCATGCCAAACGACCCAACCAAAC
64 CAAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* * * * *
32844854 TACCCTGCCAAACTTGATTGAATGCAAAAATAAGAGGTCATTTCTATAAGCATTTAAATTGGGAC
1 TGCCCTGCCAAAATTGATTGAATGC-AAAATAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* *
32844919 AAAATGGA-TGGTCATGCCAAACTACCCAGCCAAAT
65 AAAATGGACT-GTCATGCAAAACTA-TCAGCC-AAT
* * * * * ** *
32844954 TGCCATTCTAAAATTGATTGAATG-ATAAATTAAGAGGACATCTCTATAAGCATTCAAATTTTGT
1 TGCCCTGCCAAAATTGATTGAATGCA-AAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGA
* * * * *
32845018 CGAAATGGATTGTCATGCAACACTACCCAACCAAAT
64 CAAAATGGACTGTCATGCAAAACTA-TCAGCC-AAT
* * * * * * ** *
32845054 TGACCAGCTAAAATCGATTGAATGCAAAATTCAGAGGACATTTCTATAATAATTCAAATTTGGAC
1 TGCCCTGCCAAAATTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
* *
32845119 AAAATGGACTGTCATGCCAAACTACCAAGCCAAACT
65 AAAATGGACTGTCATGCAAAACTATC-AGCC-AA-T
* * * * * * **
32845155 AT-CCC--ACAAATATTGATTAAACGCAAAATTAATAAGACATTTGTATAAG-AGTTTTAATTGG
1 -TGCCCTGCCAAA-ATTGATTGAATGCAAAA-TAAGAGGACATTTTTATAAGCA-TTCAAATTGG
* * * * *
32845216 GACGAAATAGACTGTCATGCCAAATTATCCAGCAAAAT
62 GACAAAATGGACTGTCATGCAAAACTAT-CAGC-CAAT
* * *
32845254 TGCCTTG-GAAGAATTTGATTGAATG-AAAATTAAGAAGACATTT
1 TGCCCTGCCAA-AA-TTGATTGAATGCAAAA-TAAGAGGACATTT
32845297 GATAAACCAT
Statistics
Matches: 1586, Mismatches: 337, Indels: 278
0.72 0.15 0.13
Matches are distributed among these distances:
82 1 0.00
83 2 0.00
84 1 0.00
85 2 0.00
86 10 0.01
87 215 0.14
88 195 0.12
89 13 0.01
90 7 0.00
91 3 0.00
92 5 0.00
93 4 0.00
94 4 0.00
95 5 0.00
96 8 0.01
98 15 0.01
99 99 0.06
100 534 0.34
101 367 0.23
102 94 0.06
103 2 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.28
Consensus pattern (97 bp):
TGCCCTGCCAAAATTGATTGAATGCAAAATAAGAGGACATTTTTATAAGCATTCAAATTGGGACA
AAATGGACTGTCATGCAAAACTATCAGCCAAT
Found at i:32843486 original size:101 final size:101
Alignment explanation
Indices: 32843128--32844113 Score: 585
Period size: 101 Copynumber: 10.1 Consensus size: 101
32843118 TGACTGTCAG
* * * * * *
32843128 GCCAAAGTGCCCTGCTAAAA-TTCATTTAAAGCAAAATTAATAGGACATTTTTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * *
32843192 ATTGGGACTAAATGGATTGTCATGCAAAACTACCCA
66 ATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
* * * * ** * *
32843228 GCCTAATTTCCCTGCCACAATTTGATTGAATGC-ACTTTAAGAGGACATTTTTATCAGCATTCAG
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * * * * * *
32843292 ATTGAGACGAAATAGACTATAAAGCAAAATTA-TGCA
66 ATTGGGACAAAATGGACTGTCATGCAAAACTACT-CA
* * * * *
32843328 GCCAACCTGCCCTGCCAAAA-TTGATTGAATGCAAAGA-TAGGAGAATATTTCTATAAGCATTCA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAA-ATTAAGAGGACATTTTTATAAGCATTCA
*
32843391 AATTGGGACAAAATGGGCTGTCATGCAAAACTACTCA
65 AATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
* * * * *
32843428 ACCAAATTGCCTTGTCAAAATTTGATTGTATGCAAAATTAAGAGGACATTTTTATAAGCATTC-A
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * *
32843492 ATTCGGGA-AGAAATGGTCTGTCATGTC-AAACTACCCT
66 ATT-GGGACA-AAATGGACTGTCATG-CAAAACTACTCA
* * * * * *
32843529 GCCAAACTGCCCTGCCAATATTTGCTTGAGTGTAAAATTAAGAGAACATTTCTATTAATG-ATT-
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTA-TAA-GCATTC
* * * * *
32843592 AAATTGGAACGAAATGGAATGTCAAGCCAAACTACT--
64 AAATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
* * * *
32843628 ------CTG---T--CAAAATTTGATTTAATGCAAAATTAAAAAGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* **
32843682 ATTGGGACAACATTTACTGT-A-G----------C-
66 ATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
* * * * * * ** * * **
32843705 GCCAAGCCGCCCTACTAAAA-TTAATTGATTGATAAATTAAAATGACATTTCAATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTC-A
* *
32843769 AATTGGGACGAAATGGACTGTCATGCCAAACTAC-CAA
65 AATTGGGACAAAATGGACTGTCATGCAAAACTACTC-A
* * * * * * *
32843806 GCCAAGCTGCCCTACTAATATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGTATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* ** * * *
32843871 ATTGGAATGAAATGGGCTGTCATGCCAAACTACCCA
66 ATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
* * ** * * * *
32843907 GCCAAACTGCCCTGCCAAAATTTGATTGAACGTAAAATTAAGAGGATGTTTCTATGAGTAATCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * * * ** * *
32843972 TTTGGAACGAAATGGATTGTCATGTTAAACTTCCCTA
66 ATTGGGACAAAATGGACTGTCATGCAAAACTACTC-A
* *** * * * * * *
32844009 G-CAAACTGCCCTGCCAATATTTTCCTCAATGTAAAATTAAGAGCACATTTCTATTAGGATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * * *
32844073 ATTGGGACAAAATGCACTATCATGC-CAACTACTCT
66 ATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
32844108 GCCAAA
1 GCCAAA
32844114 ATTTGATTTA
Statistics
Matches: 680, Mismatches: 159, Indels: 94
0.73 0.17 0.10
Matches are distributed among these distances:
83 2 0.00
86 3 0.00
87 42 0.06
88 69 0.10
89 1 0.00
90 2 0.00
93 3 0.00
99 14 0.02
100 162 0.24
101 336 0.49
102 45 0.07
103 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (101 bp):
GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
ATTGGGACAAAATGGACTGTCATGCAAAACTACTCA
Found at i:32844600 original size:87 final size:87
Alignment explanation
Indices: 32844318--32844731 Score: 314
Period size: 88 Copynumber: 4.7 Consensus size: 87
32844308 CTACCAATGT
* * * * * * * * *
32844318 TTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTTAATTTGGGACGAAATGGATTCTC
1 TTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAGGAAATGGACTGTA
* * * * *
32844383 ATATCAAACTACCCTGTCAATA
66 AGAACAAACTGCCCTGCCAAAA
* * * * * * ** * * * *
32844405 TTTACTTGAATGCACAATAAAGAGAACATTTCTATTTGCATTCAAATTGGAACGAAATAGATTGT
1 TTGA-TTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAGGAAATGGACTGT
* * *** *
32844470 CATG-CCAAACT-ATTTCACCAAAA
65 -AAGAACAAACTGCCCT-GCCAAAA
* * *
32844493 TTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAAATTGGGA-AAAATGGACTGT
1 -TTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAGGAAATGGACTGT
*
32844557 AATG-CCAAACTGCCCTGCCAAAA
65 AA-GAACAAACTGCCCTGCCAAAA
* * * * * * *
32844580 TTAGATTGAATGCAATATTAAGAAGACATTTCTATAAGCATTCAAATTGGGAGGGAATTGACTAT
1 TT-GATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAGGAAATGGACTGT
* *
32844645 CAGAACAAACTGCCCTGCTAAAA
65 AAGAACAAACTGCCCTGCCAAAA
* * *
32844668 TTCATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTAGGATGAAATGGACTGT
1 TTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAGGAAATGGACTGT
32844732 CATTCGAAAC
Statistics
Matches: 255, Mismatches: 63, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
86 3 0.01
87 124 0.49
88 125 0.49
89 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.30
Consensus pattern (87 bp):
TTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAGGAAATGGACTGTA
AGAACAAACTGCCCTGCCAAAA
Found at i:32844623 original size:175 final size:176
Alignment explanation
Indices: 32844298--32844731 Score: 432
Period size: 175 Copynumber: 2.5 Consensus size: 176
32844288 ACTACCCAAC
** * * * * *
32844298 CAAACTGCCCCTACCAATGTTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTTAAT
1 CAAACTG-CCCTACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAA
* * * * * * *
32844363 TTGGGACGAAATGGATTCTCATATCAAACTACCCTGTCAATATTTACTTGAATGCACAATAAAGA
65 TTGGGACGAAATGGACTGTAATACCAAACTACCCTGCCAATAATTAATTGAATGCACAATAAAGA
** * * *
32844428 GAACATTTCTATTTGCATTCAAATTGGAACGAAATAGATTGTCATG-C
130 GAACATTTCTATAAGCATTCAAATTGGAACGAAATAGACTATCA-GAA
*** * *
32844475 CAAACT-ATTTCACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAAA
1 CAAACTGCCCT-ACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAA
* * * *
32844539 TTGGGA-AAAATGGACTGTAATGCCAAACTGCCCTGCCAA-AATTAGATTGAATGCA-ATATTAA
65 TTGGGACGAAATGGACTGTAATACCAAACTACCCTGCCAATAATTA-ATTGAATGCACA-ATAAA
* * * *
32844601 GA-AGACATTTCTATAAGCATTCAAATTGGGAGGGAATTGACTATCAGAA
128 GAGA-ACATTTCTATAAGCATTCAAATTGGAACGAAATAGACTATCAGAA
* * *
32844650 CAAACTGCCCTGCTAAAA-TTCATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAAT
1 CAAACTGCCCTACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAAT
* *
32844714 TAGGATGAAATGGACTGT
66 TGGGACGAAATGGACTGT
32844732 CATTCGAAAC
Statistics
Matches: 209, Mismatches: 41, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
174 54 0.26
175 97 0.46
176 52 0.25
177 6 0.03
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (176 bp):
CAAACTGCCCTACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAAT
TGGGACGAAATGGACTGTAATACCAAACTACCCTGCCAATAATTAATTGAATGCACAATAAAGAG
AACATTTCTATAAGCATTCAAATTGGAACGAAATAGACTATCAGAA
Found at i:32844742 original size:87 final size:86
Alignment explanation
Indices: 32844318--32844734 Score: 372
Period size: 87 Copynumber: 4.8 Consensus size: 86
32844308 CTACCAATGT
* * * * * *
32844318 TTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTTAATTTGGGACGAAATGGATTCTC
1 TTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTC
* * * *
32844383 ATATCAAACTACCCTGTCAATA
66 AT-GCAAACTGCCCTGCCAAAA
* * * * * ** * * *
32844405 TTTACTTGAATGCACAATAAAGAGAACATTTCTATTTGCATTCAAATTGGAACGAAATAGATTGT
1 TTGA-TTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
*** *
32844470 CATGCCAAACT-ATTTCACCAAAA
65 CATG-CAAACTGCCCT-GCCAAAA
* * *
32844493 TTTGATTGAATGAAAAATTAAGAGGACATTTTTGTAAGCATTCAAATTGGGA-AAAATGGACTGT
1 -TTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
*
32844557 AATGCCAAACTGCCCTGCCAAAA
65 CATG-CAAACTGCCCTGCCAAAA
* * * * * * *
32844580 TTAGATTGAATGCAATATTAAGAAGACATTTCTATAAGCATTCAAATTGGGAGGGAATTGACTAT
1 TT-GATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
*
32844645 CA-GAACAAACTGCCCTGCTAAAA
65 CATG--CAAACTGCCCTGCCAAAA
* * * *
32844668 TTCATTGAATGAAAAATTAAGAGGACATTTATATAAGCATTCAAATTAGGATGAAATGGACTGTC
1 TTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTC
32844733 AT
66 AT
32844735 TCGAAACTAT
Statistics
Matches: 261, Mismatches: 60, Indels: 17
0.77 0.18 0.05
Matches are distributed among these distances:
86 2 0.01
87 128 0.49
88 128 0.49
89 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.30
Consensus pattern (86 bp):
TTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTC
ATGCAAACTGCCCTGCCAAAA
Found at i:32846695 original size:100 final size:100
Alignment explanation
Indices: 32846521--32847085 Score: 659
Period size: 101 Copynumber: 5.6 Consensus size: 100
32846511 ATGACCATCA
* * * * * * * * *
32846521 ACATTTTTATAAACATTCAAATTGGCACGAAATAGAATGTAATGTCAAACAACCCAACCAAACTG
1 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* *
32846586 TCTTGCCAAAATTGATTGAATGCAAAATTAAGAGG
66 CCCTGCCAAAATTGATTGAATGCAAAATTAAGAGG
* * * * * *
32846621 ACATTTTTATAAGCATTCAAATTGTGACGAAATGGACTATTA-GACCAAATTACTCAGCCAAACT
1 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG-CCAAACTACCCAGCCAAACT
* * * * *
32846685 GCCCTTCCAAAATTTTATTAAATACAAAATTAATAGG
65 GCCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGG
* * *
32846722 ACATTTCTATAAG-AGTTCAAATTGGGACAAAATGGACTGTCATGCCTAACTACCCAGCCAAATT
1 ACATTTCTATAAGCA-TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT
* ** * * *
32846786 GCTC-GGGAAGAATTTAATTGAATACAAAATTTAGAGG
65 GCCCTGCCAA-AA-TTGATTGAATGCAAAATTAAGAGG
* * ** *
32846823 AAATTTATATAAAAATTCAAATTGGGACGAAATGGATTGTCATGCCAAACTACCCAGCCAAACTG
1 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
*
32846888 TCCTGCCAAAATTGATTGAATGCAAAATTAAGAGG
66 CCCTGCCAAAATTGATTGAATGCAAAATTAAGAGG
* * * * * *
32846923 ACATTTTTATAAGAATTCAAATTGGGACGAACTGAACTCTCATACCAAACTACCCAGCCAAACTG
1 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
*
32846988 CCCTGCCAAAATTTTATTGAATGCAAAATTAAGAGG
66 CCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGG
32847024 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
1 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
32847086 ATTGATTGAA
Statistics
Matches: 391, Mismatches: 66, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
99 1 0.00
100 150 0.38
101 235 0.60
102 5 0.01
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (100 bp):
ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
CCCTGCCAAAATTGATTGAATGCAAAATTAAGAGG
Found at i:32847009 original size:201 final size:201
Alignment explanation
Indices: 32846521--32847485 Score: 1070
Period size: 201 Copynumber: 4.9 Consensus size: 201
32846511 ATGACCATCA
* * * * * * * *
32846521 ACATTTTTATAA-ACATTCAAATTGGCACGAAATAGAATGTAATGTCAAACAACCCAACCAAACT
1 ACATTTCTATAAGA-ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT
* * * *
32846585 GTCTTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGTGAC
65 GCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * * * * * *
32846649 GAAATGGACTATTA-GACCAAATTACTCAGCCAAACTGCCCTTCCAAAATTTTATTAAATACAAA
130 GAAATGGACTGTCATG-CCAAACTACCCAGCCAAACTGCCCTGCCAAAA-TTGATTGAATGCAAA
*
32846713 ATTAATAGG
193 ATTAAGAGG
* * * *
32846722 ACATTTCTATAAGAGTTCAAATTGGGACAAAATGGACTGTCATGCCTAACTACCCAGCCAAATTG
1 ACATTTCTATAAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* ** * * * * * **
32846787 CTC-GGGAAGAATTTAATTGAATACAAAATTTAGAGGAAATTTATATAAAAATTCAAATTGGGAC
66 CCCTGCCAA-AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* *
32846851 GAAATGGATTGTCATGCCAAACTACCCAGCCAAACTGTCCTGCCAAAATTGATTGAATGCAAAAT
130 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAAT
32846916 TAAGAGG
195 TAAGAGG
* * * * *
32846923 ACATTTTTATAAGAATTCAAATTGGGACGAACTGAACTCTCATACCAAACTACCCAGCCAAACTG
1 ACATTTCTATAAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
*
32846988 CCCTGCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
66 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
32847053 AAATGGACTGTCATGCCAAACTA--C--CC--A-------GCCAAAATTGATTGAATGCAAAATT
131 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATT
*
32847105 AAGAAG
196 AAGAGG
* *
32847111 ACATTTCTATAA-ACATTCAAATTGGGATGAATTGGA-TGGTCATGCCAAACTACCCAGCCAAAC
1 ACATTTCTATAAGA-ATTCAAATTGGGACGAAATGGACT-GTCATGCCAAACTACCCAGCCAAAC
* ** * * * *
32847174 TACCAAGCTAAAA-TTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGTGT
64 TGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGA
* * * * * * * **
32847238 CGAAATGAACTGTTATGCAAAACTACCCTGCCAAATTTCCCCGCCAAAATTGATTGAACCCAAAA
129 CGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAA
*
32847303 TTAATAGG
194 TTAAGAGG
* * * * *
32847311 ACATTTCTATAAGCATTCAAAGTGGTACGAAATGGACTGTCATGCCAAACTACCCAGCCAAATTT
1 ACATTTCTATAAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* * * *
32847376 CCCTGCAAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCGATAAACATTCAAATTGGGAAG
66 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* *
32847441 AAACGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAA
131 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAA
32847486 TGTCATAACA
Statistics
Matches: 638, Mismatches: 103, Indels: 46
0.81 0.13 0.06
Matches are distributed among these distances:
187 71 0.11
188 92 0.14
189 1 0.00
191 2 0.00
193 1 0.00
195 1 0.00
197 2 0.00
199 1 0.00
200 93 0.15
201 286 0.45
202 87 0.14
203 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.26
Consensus pattern (201 bp):
ACATTTCTATAAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
AAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATT
AAGAGG
Found at i:32847128 original size:87 final size:88
Alignment explanation
Indices: 32846979--32847172 Score: 302
Period size: 87 Copynumber: 2.2 Consensus size: 88
32846969 AAACTACCCA
* * * * *
32846979 GCCAAACTGCCCTGCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTACCCAGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAA
32847044 ATTGGGACGAAATGGACT-GTCAT
66 ATTGGGACGAAATGGA-TGGTCAT
32847067 GCCAAACTACCCAGCCAAAA-TTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAA
1 GCCAAACTACCCAGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAA
* *
32847131 ATTGGGATGAATTGGATGGTCAT
66 ATTGGGACGAAATGGATGGTCAT
32847154 GCCAAACTACCCAGCCAAA
1 GCCAAACTACCCAGCCAAA
32847173 CTACCAAGCT
Statistics
Matches: 98, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
86 1 0.01
87 79 0.81
88 18 0.18
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.25
Consensus pattern (88 bp):
GCCAAACTACCCAGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAA
ATTGGGACGAAATGGATGGTCAT
Found at i:32847192 original size:100 final size:100
Alignment explanation
Indices: 32847067--32847485 Score: 518
Period size: 100 Copynumber: 4.2 Consensus size: 100
32847057 GGACTGTCAT
*
32847067 GCCAAACTACCCAGCCAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAA
1 GCCAAACTACCCAGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAA
*
32847132 TTGGGATGAATTGGA-TGGTCATGCCAAACTACCCA
66 TTGGGATGAAATGGACT-GTCATGCCAAACTACCCA
* * * *
32847167 GCCAAACTACCAAGCTAAAATTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAA
1 GCCAAACTACCCAGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAA
* * * * *
32847232 TTGTG-TCGAAATGAACTGTTATGCAAAACTACCCT
66 TTGGGAT-GAAATGGACTGTCATGCCAAACTACCCA
* * * ** * *
32847267 GCCAAATTTCCCCGCCAAAATTGATTGAACCCAAAATTAATAGGACATTTCTATAAGCATTCAAA
1 GCCAAACTACCCAGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAA
* * *
32847332 GTGGTACGAAATGGACTGTCATGCCAAACTACCCA
66 TTGGGATGAAATGGACTGTCATGCCAAACTACCCA
* * * * *
32847367 GCCAAATTTCCCTGCAAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCGATAAACATTCAA
1 GCCAAACTACCCAGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAA
* * *
32847432 ATTGGGAAGAAACGGACTGTCATGCCAAACTACCTA
65 ATTGGGATGAAATGGACTGTCATGCCAAACTACCCA
* *
32847468 GCCAAACTGCCCTGCCAA
1 GCCAAACTACCCAGCCAA
32847486 TGTCATAACA
Statistics
Matches: 272, Mismatches: 43, Indels: 7
0.84 0.13 0.02
Matches are distributed among these distances:
99 1 0.00
100 185 0.68
101 86 0.32
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.25
Consensus pattern (100 bp):
GCCAAACTACCCAGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAA
TTGGGATGAAATGGACTGTCATGCCAAACTACCCA
Found at i:32849550 original size:156 final size:157
Alignment explanation
Indices: 32849369--32849680 Score: 434
Period size: 156 Copynumber: 2.0 Consensus size: 157
32849359 AAATCAAAGC
32849369 TTTCTTTTAAGAAAAATCACTACTTTCCTTAAAGATCAAAAC-TTTATTTCGAAATAGTTGAAAA
1 TTTCTTTTAAGAAAAATCACTACTTTCCTTAAAGATCAAAACTTTTATTTCGAAATAGTTGAAAA
* * * *
32849433 AGATCAAAAC-TTTGTTTTAAAAATTTAAAATTTTCCTTTAAAATGA-TTAAAAAAACAGATTTT
66 AAATCAAAACATTT-TTTT-AAAATTTAAAACTTTCCTTTAAAATGACTAAAAAAAACAGAATTT
32849496 TATTCTTAAAAATCTAAACTTTCACTTTTT
129 TATT-TTAAAAATCTAAACTTTCACTTTTT
* * * *
32849526 TTTCTTTTAA-AAAAATCACTACTTTTCTTAAATATCAAAGCTTTTATTTTGAAATAGTTGAAAA
1 TTTCTTTTAAGAAAAATCACTACTTTCCTTAAAGATCAAAACTTTTATTTCGAAATAGTTGAAAA
** * **
32849590 AAATCAAAACATTTTTTTTTAATTTTAAACTTTCCTTTAAAATGACTAAAAAAAACTTAATTTTA
66 AAATCAAAACATTTTTTTAAAATTTAAAACTTTCCTTTAAAATGACTAAAAAAAACAGAATTTTA
* *
32849655 TTTTTAAAATCTAAACTTTCTCTTTT
131 TTTTAAAAATCTAAACTTTCACTTTT
32849681 AAAAAAATCC
Statistics
Matches: 137, Mismatches: 15, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
156 73 0.53
157 61 0.45
158 3 0.02
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.43
Consensus pattern (157 bp):
TTTCTTTTAAGAAAAATCACTACTTTCCTTAAAGATCAAAACTTTTATTTCGAAATAGTTGAAAA
AAATCAAAACATTTTTTTAAAATTTAAAACTTTCCTTTAAAATGACTAAAAAAAACAGAATTTTA
TTTTAAAAATCTAAACTTTCACTTTTT
Found at i:32850372 original size:101 final size:101
Alignment explanation
Indices: 32850197--32850560 Score: 334
Period size: 101 Copynumber: 3.8 Consensus size: 101
32850187 GTGTCTACAA
* * **
32850197 CCAATATTTGATTGAATGCAAAATTAATAGGACATTTCTATAAGTATTCAAATTGGGAAGAAATG
1 CCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGGAAGAAATG
32850262 GACTATCATGCCAAACTACCCAGCCAAATTTCCCTG
66 GACTATCATGCCAAACTACCCAGCCAAATTTCCCTG
* * * *
32850298 CCAATGTTTGATTGAATGCAAAATTAAGAAGTCATTTCTATAAACATT-ATACTTGGGATGAAAT
1 CCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCA-AATTGGGAAGAAAT
*
32850362 GGACTGTCATGCCAAACT-----G--------CCCTG
65 GGACTATCATGCCAAACTACCCAGCCAAATTTCCCTG
* * * *
32850386 CCAA-AATTGATTGAACGCAAAATTAAGAGGACATTAT-TATAAGCATTCAAATTGGGACA-AAA
1 CCAATATTTGATTGAATGCAAAATTAAGAAGACATT-TCTATAAACATTCAAATTGGGA-AGAAA
* * * * *
32850448 TGGA-TGTCATGCAAAACTACCTAGCCAAACTACCCTG
64 TGGACTATCATGCCAAACTACCCAGCCAAATTTCCCTG
* ** * * * * *
32850485 CCAA-AATTGATTGAACACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTTGGACGAAATA
1 CCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGGAAGAAATG
32850549 GACTATCATGCC
66 GACTATCATGCC
32850561 TATAACACCC
Statistics
Matches: 219, Mismatches: 24, Indels: 41
0.77 0.08 0.14
Matches are distributed among these distances:
86 13 0.06
87 49 0.22
88 11 0.05
91 1 0.00
96 1 0.00
98 1 0.00
99 64 0.29
100 8 0.04
101 71 0.32
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (101 bp):
CCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGGAAGAAATG
GACTATCATGCCAAACTACCCAGCCAAATTTCCCTG
Found at i:32850441 original size:87 final size:86
Alignment explanation
Indices: 32850305--32850465 Score: 209
Period size: 87 Copynumber: 1.9 Consensus size: 86
32850295 CTGCCAATGT
* * * **
32850305 TTGATTGAATGCAAAATTAAGAAGTCATTTCTATAAACATTATACTTGGGATGAAATGGACTGTC
1 TTGATTGAACGCAAAATTAAGAAGACATTTCTATAAACATTATAATTGGGACAAAATGGA-TGTC
*
32850370 ATGCCAAACTGCCCTGCCAAAA
65 ATGCAAAACTGCCCTGCCAAAA
* *
32850392 TTGATTGAACGCAAAATTAAGAGGACATTAT-TATAAGCATTCA-AATTGGGACAAAATGGATGT
1 TTGATTGAACGCAAAATTAAGAAGACATT-TCTATAAACATT-ATAATTGGGACAAAATGGATGT
32850455 CATGCAAAACT
64 CATGCAAAACT
32850466 ACCTAGCCAA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
86 13 0.20
87 49 0.77
88 2 0.03
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (86 bp):
TTGATTGAACGCAAAATTAAGAAGACATTTCTATAAACATTATAATTGGGACAAAATGGATGTCA
TGCAAAACTGCCCTGCCAAAA
Found at i:32851718 original size:32 final size:32
Alignment explanation
Indices: 32851677--32851741 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
32851667 TGAACCTCGG
32851677 TTTACTTGGGTAATTTACCGTCAATTCATCCT
1 TTTACTTGGGTAATTTACCGTCAATTCATCCT
32851709 TTTACTTGGGTAATTTACCGTCAATTCATCCT
1 TTTACTTGGGTAATTTACCGTCAATTCATCCT
32851741 T
1 T
32851742 ACATTCGTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.45
Consensus pattern (32 bp):
TTTACTTGGGTAATTTACCGTCAATTCATCCT
Found at i:32853895 original size:14 final size:14
Alignment explanation
Indices: 32853872--32853910 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
32853862 TTTCGTTTGC
32853872 TTTCTGTTTCTTTT
1 TTTCTGTTTCTTTT
*
32853886 TTTCTTTTTC-TTT
1 TTTCTGTTTCTTTT
32853899 TTT-TGTTTCTTT
1 TTTCTGTTTCTTT
32853911 CCTTTCTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 5 0.23
13 8 0.36
14 9 0.41
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (14 bp):
TTTCTGTTTCTTTT
Found at i:32854028 original size:139 final size:139
Alignment explanation
Indices: 32853861--32854141 Score: 553
Period size: 139 Copynumber: 2.0 Consensus size: 139
32853851 TTCCTTCCTA
32853861 TTTTCGTTTGCTTTCTGTTTCTTTTTTTCTTTTTCTTTTTTTGTTTCTTTCCTTTCTAATTTCCT
1 TTTTCGTTTGCTTTCTGTTTCTTTTTTTCTTTTTCTTTTTTTGTTTCTTTCCTTTCTAATTTCCT
*
32853926 TTATCTTATTTACCTATTTATAATTATACATTATAATTCATTTTTAGCAAATATCTGTTACTTAA
66 TTATCTTATTTACCTATTTATAATTATACATTATAATTCATTTTTAGCAAATATCTATTACTTAA
32853991 ATAAATATT
131 ATAAATATT
32854000 TTTTCGTTTGCTTTCTGTTTCTTTTTTTCTTTTTCTTTTTTTGTTTCTTTCCTTTCTAATTTCCT
1 TTTTCGTTTGCTTTCTGTTTCTTTTTTTCTTTTTCTTTTTTTGTTTCTTTCCTTTCTAATTTCCT
32854065 TTATCTTATTTACCTATTTATAATTATACATTATAATTCATTTTTAGCAAATATCTATTACTTAA
66 TTATCTTATTTACCTATTTATAATTATACATTATAATTCATTTTTAGCAAATATCTATTACTTAA
32854130 ATAAATATT
131 ATAAATATT
32854139 TTT
1 TTT
32854142 ATTACAAATG
Statistics
Matches: 141, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
139 141 1.00
ACGTcount: A:0.21, C:0.14, G:0.04, T:0.61
Consensus pattern (139 bp):
TTTTCGTTTGCTTTCTGTTTCTTTTTTTCTTTTTCTTTTTTTGTTTCTTTCCTTTCTAATTTCCT
TTATCTTATTTACCTATTTATAATTATACATTATAATTCATTTTTAGCAAATATCTATTACTTAA
ATAAATATT
Found at i:32854034 original size:14 final size:14
Alignment explanation
Indices: 32854011--32854049 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
32854001 TTTCGTTTGC
32854011 TTTCTGTTTCTTTT
1 TTTCTGTTTCTTTT
*
32854025 TTTCTTTTTC-TTT
1 TTTCTGTTTCTTTT
32854038 TTT-TGTTTCTTT
1 TTTCTGTTTCTTT
32854050 CCTTTCTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 5 0.23
13 8 0.36
14 9 0.41
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (14 bp):
TTTCTGTTTCTTTT
Found at i:32854046 original size:18 final size:18
Alignment explanation
Indices: 32853998--32854054 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
32853988 TAAATAAATA
* *
32853998 TTTTTTCGTTTGCTTTCTG
1 TTTTTTTGTTT-CTTTCTC
*
32854017 TTTCTTTT-TTTCTTTTTC
1 TTT-TTTTGTTTCTTTCTC
32854035 TTTTTTTGTTTCTTTC-C
1 TTTTTTTGTTTCTTTCTC
32854052 TTT
1 TTT
32854055 CTAATTTCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
17 8 0.25
18 15 0.47
19 6 0.19
20 3 0.09
ACGTcount: A:0.00, C:0.16, G:0.07, T:0.77
Consensus pattern (18 bp):
TTTTTTTGTTTCTTTCTC
Found at i:32854868 original size:101 final size:101
Alignment explanation
Indices: 32854692--32855902 Score: 1213
Period size: 101 Copynumber: 12.1 Consensus size: 101
32854682 ATTACAATGT
* * ** * *
32854692 CAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATATAAAATTAAGATGATATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
*
32854757 TAAG-AGTTCAAATAT-GGACGAAATAGACTGTCATGC
66 TAAGCA-TTCAAAT-TGGGACGAAATGGACTGTCATGC
* * * *
32854793 CAAACTACCCAGCTAAATTTCCCAGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCAA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
*
32854858 TACA-CATTCAAATTGGGACGAAAT--A--GACATGC
66 TA-AGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * *
32854890 CAAACTACCCAGCTAAA-TATCGCTGCCAAAATTTGATTCAATGCAAAATTAAAAGGACATTTCG
1 CAAACTACCCAGCCAAACT-TCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
*
32854954 ATACA-CATTCAAATTGGGATGAAATGGACTGTCATGC
65 ATA-AGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * *
32854991 CAAACTGCCCAGCCAAACTTCCCTGCCAAAA-CTGATTGAATGTAAAATTAAAAGGAAATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
32855055 TAAGCATCCAAATTGGGTCGAAATGGACTGTCAAGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* ** **
32855091 CAAATTACCCAGCCAAACAACCCTGCCAATTTTTGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * *
32855156 TAAGCATTCAAATTGAGACAAAATAGACTATCATGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * * * * *
32855192 AAAACCATCCAACCAAACTGT-CCTGCCAAAAGTTGATTGAATGCAAAATTAAGAGTACTTTTCA
1 CAAACTACCCAGCCAAACT-TCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * *
32855256 ATAAACATTCAAATTGGTACGAAATGAACTGTCATGT
65 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * *
32855293 CAAACTACCCAGCCAAA-TTGCCATG-CAAAAATTGATTGAATGCAAAATTAAGAGAACATTTTT
1 CAAACTACCCAGCCAAACTT-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * *
32855356 CTAAGCATTAAAATTGGGACGAAATGGAATGTCATGC
65 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * * *
32855393 CAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGTTTGAATGCAGAATTAAGAAGAAATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
** * *
32855458 TAAGCATTCAAAAAGGGACAAAATGGACAGTCATGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * *
32855494 CAAACTACCTTATG--AAACTGCCCTG-CAAAACTTTGATTGAATGCAATATTAAGAGGACATTT
1 CAAACTACC-CA-GCCAAACTTCCCTGCCAAAA-TTTGATTGAATGCAAAATTAAGAGGACATTT
** * * * * * *
32855556 AAATAGGAACTCCAATTGGGACGAAATAGATTGTCATGC
63 CTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * * *
32855595 CAAACTACCCAACCAAACTGCCCTTCCCAAATTTGATTGAATGACACAA-TAAAAGGACATTTCT
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATG-CAAAATTAAGAGGACATTTCT
* * *
32855659 ATAAGCACTCAAATTGGGATGAAATAGA-TGGTCATGC
65 ATAAGCATTCAAATTGGGACGAAATGGACT-GTCATGC
* * * * *
32855696 CAAACTACCCAGCCAAA-TTGCCATGCTAAAA-TTGATTGAATACAAAATTAATAGGATATTTCT
1 CAAACTACCCAGCCAAACTT-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* ** *
32855759 ATAAGCATTCAAATTGAGATAAAATGGACTGTTATGC
65 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * * * * * *
32855796 AAAACTACCCAGCCAAACTACCTTGGCAAAA-TTGATTGAACGCCAAATTCAGAGGACAATCCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
32855860 AAAGCATTCAAATTGGGACGAAATGGATTGTCATTC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
32855896 CAAACTA
1 CAAACTA
32855903 TCTGACCAAA
Statistics
Matches: 914, Mismatches: 168, Indels: 57
0.80 0.15 0.05
Matches are distributed among these distances:
96 1 0.00
97 87 0.10
99 8 0.01
100 313 0.34
101 492 0.54
102 12 0.01
103 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (101 bp):
CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
Found at i:32855363 original size:302 final size:302
Alignment explanation
Indices: 32854692--32859995 Score: 3758
Period size: 302 Copynumber: 18.0 Consensus size: 302
32854682 ATTACAATGT
* ** *
32854692 CAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATATAAAATTAAGATG-ATATTTCT
1 CAAACTACCCAGCCAAACTGCCCTGCCAAAA-TTGATTGAATGCAAAATTAAGA-GAACATTTCT
* * * * *
32854756 ATAAG-AGTTCAAATAT-GGACGAAATAGACTGTCATGCCAAACTACCCAGCTAAATTTCCCAGC
64 ATAAGCA-TTCAAAT-TGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGC
* *
32854819 CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCAATACA-CATTCAAATTGGGACGAAAT-
127 CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA-AGCATTCAAATTGGGACAAAATG
* * * * * * *
32854882 -A-GA-CATGCCAAACTACCCAGCTAAA-TATCGCTGCCAAAATTTGATTCAATGCAAAATTAAA
191 GACTATCATGCCAAACTATCCAGCCAAACT-GCCCTGCCAAAATTTGATTGAATGCAAAATTAAG
* *
32854943 AGGACATTTCGATACA-CATTCAAATTGGGATGAAATGGACTGTCATGC
255 AGGACATTTCTATA-AGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * *
32854991 CAAACTGCCCAGCCAAACTTCCCTGCCAAAACTGATTGAATGTAAAATTAAAAGGAA-ATTTCTA
1 CAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGA-GAACATTTCTA
* * * * *
32855055 TAAGCATCCAAATTGGGTCGAAATGGACTGTCAAGCCAAATTACCCAGCCAAACAACCCTGCCAA
65 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
** * *
32855120 TTTTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAGACAAAATAGACT
130 AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGACT
* * * * * *
32855185 ATCATGCAAAACCATCCAACCAAACTGTCCTGCCAAAAGTTGATTGAATGCAAAATTAAGAGTAC
195 ATCATGCCAAACTATCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGAC
* * * * * *
32855250 TTTTCAATAAACATTCAAATTGGTACGAAATGAACTGTCATGT
260 ATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * *
32855293 CAAACTACCCAGCCAAATTGCCATGCAAAAATTGATTGAATGCAAAATTAAGAGAACATTTTTCT
1 CAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTAT
* * * *
32855358 AAGCATTAAAATTGGGACGAAATGGAATGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAA
66 AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAA
* * * * **
32855423 ATTTGTTTGAATGCAGAATTAAGAAGAAATTTCTATAAGCATTCAAAAAGGGACAAAATGGAC-A
131 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGACTA
*
32855487 GTCATGCCAAACTA-CCTTATG--AAACTGCCCTG-CAAAACTTTGATTGAATGCAATATTAAGA
196 -TCATGCCAAACTATCC--A-GCCAAACTGCCCTGCCAAAA-TTTGATTGAATGCAAAATTAAGA
** * * * * * *
32855548 GGACATTTAAATAGGAACTCCAATTGGGACGAAATAGATTGTCATGC
256 GGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * * *
32855595 CAAACTACCCAACCAAACTGCCCTTCCCAAATTTGATTGAATGACACAA-TAAAAGGACATTTCT
1 CAAACTACCCAGCCAAACTGCCC-TGCCAAAATTGATTGAATG-CAAAATTAAGAGAACATTTCT
* * * * * * *
32855659 ATAAGCACTCAAATTGGGATGAAATAGA-TGGTCATGCCAAACTACCCAGCCAAATTGCCATGCT
64 ATAAGCATTCAAATTGGGACGAAATGGACT-GTCATGCCAAACTACCCAGCCAAACTACCCTGCC
* * * * *
32855723 AAAA-TTGATTGAATACAAAATTAATAGGATATTTCTATAAGCATTCAAATTGAGATAAAATGGA
128 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGA
* * * * * * * * * *
32855787 CTGTTATGCAAAACTACCCAGCCAAACTACCTTGGCAAAA-TTGATTGAACGCCAAATTCAGAGG
193 CTATCATGCCAAACTATCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGG
* * * * *
32855851 ACAATCCTAAAAGCATTCAAATTGGGACGAAATGGATTGTCATTC
258 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * *
32855896 CAAACTATCTGACCAAATTACGCAGCAAAATTG-ACAGCCAAAATTTGATTGAATGCAAAACTAA
1 CAAACTA-C---CC-----A-GC--C-AAACTGCCCTGCCAAAA-TTGATTGAATGCAAAATTAA
* * * *** * *** * * *
32855960 GAGGA-A-TT-GA-AATGGA--C-AATCATG-C-AAA--AACACCCA-GCCAAATTTCCCTGCC-
52 GAGAACATTTCTATAA-GCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* *
32856012 -A--A---------AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGTAGTCAAATTG
116 AACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG
* * * * * * * *
32856065 AGACGAAATGGACTGTTAAGCCAAACT-TCCAAGCCAAACAGCCCTACCAATATTTGATTGAATG
181 GGACAAAATGGACTATCATGCCAAACTATCC-AGCCAAACTGCCCTGCCAAAATTTGATTGAATG
* * * * * *
32856129 AAAAATTAAGAAGTCATTTCTATAAGCATTGAAATTTGGACGAAATGGACGGTCATGC
245 CAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * * * *
32856187 CAAACTACCCAGCCAAACTACCCTGCCTTAATTTGAGTAAATGAAAAATTAATATG-ACATTTCT
1 CAAACTACCCAGCCAAACTGCCCTGCC-AAAATTGATTGAATGCAAAATTAAGA-GAACATTTCT
* * * * * *
32856251 GTAAG-AGTTCAAATAT-GGATGAAATGGACAGTCATGCCAAACTACCCAGCCAAATTTCCCAGC
64 ATAAGCA-TTCAAAT-TGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGC
* * * * * * *
32856314 CAAAATTTTATTGAATGTAAAATTAAGAGGACATTTCGATAAACTTTCAAATTGGGACGAAATGC
127 CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGG
* * * * * *** *
32856379 ACTGTCATGCCAAACTACCCAGCCAACCTTCTCTGTTGAAA-TTGACTGAATGCAAAATTAAGAG
192 ACTATCATGCCAAACTATCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAG
* * * *
32856443 AACATTTCTATAAGCATTCAAATTGGGACGAAATGAACTGCCACGC
257 GACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * * *
32856489 CAAACTACCTAGCCAAACTGCCC-GACCAATATTTTATTGAATGAAAAATTATGAGGACATTT-T
1 CAAACTACCCAGCCAAACTGCCCTG-CCAA-AATTGATTGAATGCAAAATTAAGAGAACATTTCT
* ** * * * * * *
32856552 AATAAACATTCATGTTGGAACGAAATGAACTGTCATGCCAAACTATCAAGCCAAACTACCCTACG
64 -ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC
* * *
32856617 AATATTTGATTGATTGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAAT-GA
128 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGA
* * * * *
32856681 --A-C-TG--------T---GCCAAACTACCTTGTCAAAATTTGATTGAATGTAAAATTAAAAGG
193 CTATCATGCCAAACTATCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGG
* * *
32856731 ACATTACTATAAACATTCAAATTGGTACGAAATGGACTGTCATGC
258 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * * *
32856776 CAATCTACCTAGCCAAACTGCCATGCCATAATTGATTGAATACAAAATTATGAGAACATTTCTAT
1 CAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTAT
*
32856841 AAGCATT-AAATTTGGGACGAAATGGACTGTAATGCCAAACT-----GCC---CTA------CAA
66 AAGCATTCAAA-TTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* *** * *
32856891 AATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAATTTTTTAAATTCGGAC------GA--
130 AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGACT
* * * *
32856948 A--AT---AAACTAT-CATGCCACACTACCCTGCCAAAA-TTGATTGAATGCTAAATTAAGAGAA
195 ATCATGCCAAACTATCCA-GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGA
* * ** *
32857006 CATTTCTATAAGCATTCAAATTGCGACGAAATAGACAATCAAGC
259 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * **
32857050 CAAACTACCCAGTCAAACTGTCCTGCCAATATTTGATTGAATGCACAATTAAGAGGCCATTTCTA
1 CAAACTACCCAGCCAAACTGCCCTGCCAA-AATTGATTGAATGCAAAATTAAGAGAACATTTCTA
* ** * * * * * * *
32857115 TAAACATTCAAATTAAGACGAAATGAAC-GTTCATGCCAAAATAACAAGCCAAACTATCTTGTCA
65 TAAGCATTCAAATTGGGACGAAATGGACTG-TCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * * *
32857179 ATAGTTGATTGAATGCAAAATTAAGAGGACATTTCT-TAAAGCGTTCAAATTTGGACAAAATGGA
129 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AAGCATTCAAATTGGGACAAAATGGA
* * *
32857243 CTGTTATGCCAAA-T-T---G-C---CT----TGCCAAAATTTGATTGAATGTAAAATTAAGAGG
193 CTATCATGCCAAACTATCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGG
* * * *
32857295 ACATTTCTAT-AGACATTCAAATTGGTACGAAATTGACTATAATGC
258 ACATTTCTATAAG-CATTCAAATTGGGACGAAATGGACTGTCATGC
* * * *
32857340 CAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGCAGAATTAAGA-AGACATTTTTA
1 CAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGA-ACATTTCTA
* * * * * * * * * * *
32857404 TAAGTAATAAAATTAGCACAAAATGGACTTTCATGCCAAACTACCAAACCAAACTTCACTGCCAA
65 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * * * *
32857469 AATTTGATTAAATGCAAAATTAAGAAGACAATTCTATAAGCGTTTAAATTGGGACGAAATGGACT
130 AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGACT
* * * * ** * * * * *
32857534 GTCATGCCAAACTGTCTAACCAAACTTTCCTACCAAAATTTGATTGAATTCGAACTTACA-ATGA
195 ATCATGCCAAACTATCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTA-AGAGGA
* * * *
32857598 CATTTCTATAAACATTCAAATTGAGACGAAATTGACTGTCATGG
259 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * *
32857642 CAAACTACCCAACCAAACTACCGTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTAT
1 CAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTAT
* * * * *
32857707 AAGAATTCAAATTGGAACGAAATGAACAGTCATGCCAAACTACCCAGCCAAACTACCATGCCAAA
66 AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAA
* * * **
32857772 A-TTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGAATTCAAATTGGGACGAAATGGACGG
131 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGACTA
* * * * *
32857836 TCATGCCAAACTACCCAACCAAACTGCCATGCTACAA-TTGATTGAATGCAAAATTAAGAGGACA
196 TCATGCCAAACTATCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACA
* * *
32857900 TTTCTATAAGCATTCAAATTGGTACGAAATTGACTGTCATAC
261 TTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * * * **
32857942 TAAACTGCCCAGCCAAATTGCCCTACCAAAATTGATT-AATGCAAATTTTAGAGGGCATTTCTAT
1 CAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTAT
** * * * * ***
32858006 AAAAATTTAAATAGGGACAAAATGGA----C-TG----AC-A--C-GCCTAACTACTGAGCCAAA
66 AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAA
* * *
32858058 ATTTGATTGCATGCAAAATTAAGAGGACATTTCTATAA-TAGTTCAAATTGGGACGAAGA-GGAC
131 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGAC-AAAATGGAC
* * * * * * * *
32858121 -AGTCATGCAAAAAT-TCCCAACCAAATTTCCTTCCCAAAATTTGATT-AATTGC-AAATTAAAA
194 TA-TCATGCCAAACTAT-CCAGCCAAACTGCCCTGCCAAAATTTGATTGAA-TGCAAAATT-AAG
* * * *
32858182 ATGACATTTCGATACA-CAATCAAATTGGGATGAAATGGACTGTCATGC
255 AGGACATTTCTATA-AGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * *
32858230 AAAACTACCCAGCCAAACTTCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTAT
1 CAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTAT
* * ** * * * * * * *
32858295 AAACATTCAAATTGGTACGAAATTAACAGTCATGCCAAACAACCCAACCAAATTGCCCTACCAAT
66 AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAA
* * * * ** *
32858360 ATTTGATTGTATGCAAAATTAAGAGGACATTTCTATAGGTATTCAAATTAGGACAAAATAAACTG
131 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGACTA
* * * * * * * * *
32858425 TCATGCCAAACAACCCAGCCAAACAGCCCTTCCAATATTTGCTTGAATGAAAAATTAAGAAGTCA
196 TCATGCCAAACTATCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACA
32858490 TTTCTATAAGCATT-ATAATTGGGACGAAATGGACTGTCATGC
261 TTTCTATAAGCATTCA-AATTGGGACGAAATGGACTGTCATGC
* * * * *
32858532 CAAACT-----G------T--TCTGCCAAAATTAATTGAACGCAAAATTAAAAGGACATTTCTAT
1 CAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTAT
* *** * * * * ** * *
32858584 AAGCATTCAAATTGGTACGAAATGGAAAATCATACCAAACTACTCAGCTAAATTGTCCTGCGAAC
66 AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAA
* * * * * * *
32858649 ATTTGATTTAATGTAAAATCAAGAGGACATTTCTATAGGCATTCAAATTGGGACGAAATAGACTG
131 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGACTA
* * ** * ***
32858714 TCATGCCAAACTA-CCTAGCCAAACAGCCCGGCCAATGTTTGCTTGAATGCAAAATTAAGAACTC
196 TCATGCCAAACTATCC-AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGAC
* *
32858778 ATTTCTATAAGCATT-ATACTTGGGACGAAATGGATTGTCATGC
260 ATTTCTATAAGCATTCA-AATTGGGACGAAATGGACTGTCATGC
* * * *
32858821 CAAACTACCCCGCCAAACTACCTTGCCAATATTTGATTGAATGCAAAATTAAGA-AGACATTTCT
1 CAAACTACCCAGCCAAACTGCCCTGCCAA-AATTGATTGAATGCAAAATTAAGAGA-ACATTTCT
* * * * * * * *
32858885 ATAAACATTCAAATTTGGACAAAATGAATTGTC--G------T-----GACAAACTTCCATGCCA
64 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * * * *
32858937 AAA-TTGATTGAATGCAAAATTAAAATGACATTTTTATAAGCATTAAAATTGGGACGAAATGGAC
129 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGAC
* * * * *
32859001 TATCAAGCCAAACTA-CCTAGCTAAACTGCCCTACCAATATTTTATTGAATGCAAAATTAAGAGG
194 TATCATGCCAAACTATCC-AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGG
* *
32859065 ACATTTCTATAAGCATTCAAATTGGG-CTAAAATGGAATGTCATGC
258 ACATTTCTATAAGCATTCAAATTGGGAC-GAAATGGACTGTCATGC
* * ** * * * *
32859110 CAAACTACCAATCCCAAACAACCTTGCTAGAATTTGATTGAATGCAAAATTAAGAGAATATTTCT
1 CAAACTACCCA-GCCAAACTGCCCTGCCA-AAATTGATTGAATGCAAAATTAAGAGAACATTTCT
* * * * * * * *
32859175 ATAAGCATTAAAATTAGAACAAAATGGACTATCATGCCAAACTATCCAGCCATACTACTCTGCCA
64 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * * * *
32859240 AAATTTGATTGAATTCAAAATTAAGAGAATATTTTTATAAACATTCAAATTGGGACAAAATGGAC
129 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGAC
* * *
32859305 TATCATGCCAAAC--T---G------T--CCTGCCATAATTTGATGGAATGCAAAATTAAGAAGA
194 TATCATGCCAAACTATCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGA
* ** * * * *
32859357 GATTTCTATAAGCATTCAAATTAAGACGAATTGGACTATAATGT
259 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
** * * * *
32859401 TGAACGACCCAGCC--A----------AAATTTGATTGAATGAAAAATTAAGAGGACATTTCTAT
1 CAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTAT
* * * * * * * ** *
32859454 AAGTATTCAAAATTGGGTCAAAATGTACTATAATGTCAAACTACCCAATCAAACTGCCCTGCCAA
66 AAGCATTC-AAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * * * * ** *
32859519 AATTAGATTAAATGTAAAATTAA-AAGAAATTTCTATAAGCATTAAAATTGGGATGAAATTGACT
130 AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGACT
* *
32859583 ATCATGCCAAACTACCCAGCAAAACTACCTAGCAAAACTTACTTGCCAAAATTTGATTGAATGCA
195 ATCATGCCAAACTATCCAGC-CAA--A-CT-GC----C---C-TGCCAAAATTTGATTGAATGCA
* * * * * *
32859648 AAATTAAGAGGACATTTCTATAAACATTAAAAATGGGACGAAATGTACAGTCACAG-
247 AAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCA-TGC
* * * * * *
32859704 GAAACTACACAGCCAAA-TAGCCATACCAAAATTGATGGAATTCAAAATT-A-AG-ACATTTCTA
1 CAAACTACCCAGCCAAACT-GCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTA
** * *
32859765 TGTGTATTCAAATTGGGACGAAATGCACATG-CATG------T----A---AAACTACCCTGCCA
65 TAAGCATTCAAATTGGGACGAAATGGAC-TGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * * * *
32859816 AAATTTGATTGAAAGAAAAATTAAGTA-GACATTTTTATAAGGATTCAAATTGGGACGAAATGGA
129 AAATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGA
* * * * * *
32859880 CTGTCATGCCAAACTACCCAG-CAAATCTGTCCTACCAAAATTTGATTGGATTCAAAATTAAGAG
193 CTATCATGCCAAACTATCCAGCCAAA-CTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAG
* *
32859944 GACATTTCTATAAGCATTCAAATTGGGACGAAATGTACTATCATGC
257 GACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
32859990 CAAACT
1 CAAACT
32859996 GCCCTATCGG
Statistics
Matches: 3971, Mismatches: 774, Indels: 533
0.75 0.15 0.10
Matches are distributed among these distances:
267 4 0.00
272 49 0.01
274 81 0.02
275 76 0.02
276 3 0.00
277 84 0.02
278 71 0.02
279 23 0.01
280 7 0.00
281 8 0.00
282 3 0.00
283 5 0.00
284 1 0.00
285 6 0.00
286 165 0.04
287 176 0.04
288 90 0.02
289 654 0.16
290 268 0.07
291 136 0.03
292 4 0.00
293 4 0.00
294 6 0.00
295 8 0.00
296 1 0.00
297 8 0.00
298 170 0.04
299 130 0.03
300 94 0.02
301 172 0.04
302 951 0.24
303 328 0.08
304 72 0.02
305 7 0.00
307 4 0.00
308 1 0.00
309 2 0.00
310 4 0.00
311 22 0.01
312 27 0.01
313 22 0.01
314 6 0.00
315 18 0.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (302 bp):
CAAACTACCCAGCCAAACTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTAT
AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAA
ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGACTA
TCATGCCAAACTATCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACA
TTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
Found at i:32856102 original size:101 final size:101
Alignment explanation
Indices: 32855968--32858057 Score: 1729
Period size: 101 Copynumber: 21.3 Consensus size: 101
32855958 AAGAGGAATT
** * * *
32855968 GAAATGGACAATCATGCAAAAAC-ACCCAGCCAAATTTCCCTGCCAAAATTTGATTGAATGCAAA
1 GAAATGGACTGTCATGC-CAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAA
* * *
32856032 ATTAAGAGGACATTTCTATAAGTAGTCAAATTGAGAC
65 ATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * * * * * *
32856069 GAAATGGACTGTTAAGCCAAACTTCCAAGCCAAACAGCCCTACCAATATTTGATTGAATGAAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * * *
32856134 TTAAGAAGTCATTTCTATAAGCATTGAAATTTGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * ** * * *
32856170 GAAATGGACGGTCATGCCAAACTACCCAGCCAAACTACCCTGCCTTAATTTGAGTAAATGAAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * * *
32856235 TTAATATGACATTTCTGTAAG-AGTTCAAATAT-GGAT
66 TTAAGAGGACATTTCTATAAGCA-TTCAAAT-TGGGAC
* * * * * *
32856271 GAAATGGACAGTCATGCCAAACTACCCAGCCAAATTTCCCAGCCAAAATTTTATTGAATGTAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * *
32856336 TTAAGAGGACATTTCGATAAACTTTCAAATTGGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * * *** *
32856372 GAAATGCACTGTCATGCCAAACTACCCAGCCAACCTTCTCTGTTGAAA-TTGACTGAATGCAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
*
32856436 TTAAGAGAACATTTCTATAAGCATTCAAATTGGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * * * * *
32856472 GAAATGAACTGCCACGCCAAACTACCTAGCCAAACTGCCC-GACCAATATTTTATTGAATGAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTG-CCAAAATTTGATTGAATGCAAA
* * ** *
32856536 ATTATGAGGACATTT-TAATAAACATTCATGTTGGAAC
65 ATTAAGAGGACATTTCT-ATAAGCATTCAAATTGGGAC
* * * * * * * * *
32856573 GAAATGAACTGTCATGCCAAACTATCAAGCCAAACTACCCTACGAATATTTGATTGATTGTAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
32856638 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * *
32856674 AAAATGAACTG---TGCCAAACT----A--C---CT----TGTCAAAATTTGATTGAATGTAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * * *
32856723 TTAAAAGGACATTACTATAAACATTCAAATTGGTAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * * *
32856759 GAAATGGACTGTCATGCCAATCTACCTAGCCAAACTGCCATGCCATAA-TTGATTGAATACAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* *
32856823 TTATGAGAACATTTCTATAAGCATT-AAATTTGGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAA-TTGGGAC
*
32856859 GAAATGGACTG---T----AA-T-----GCCAAACTGCCCT-ACAAAATTTGATTGAATGCAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* *** * *
32856910 TTAAGAGGATATTTCTATAATTTTTTAAATTCGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
** * * *
32856946 GAAATAAAC--T-AT--C--A-T-----GCCACACTACCCTGCCAAAA-TTGATTGAATGCTAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* *
32856997 TTAAGAGAACATTTCTATAAGCATTCAAATTGCGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* ** * * * * *
32857033 GAAATAGACAATCAAGCCAAACTACCCAGTCAAACTGTCCTGCCAATATTTGATTGAATGCACAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * **
32857098 TTAAGAGGCCATTTCTATAAACATTCAAATTAAGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * * ** * * * *
32857134 GAAATGAAC-GTTCATGCCAAAATAACAAGCCAAACTATCTTGTCAATAGTTGATTGAATGCAAA
1 GAAATGGACTG-TCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAA
* *
32857198 ATTAAGAGGACATTTCT-TAAAGCGTTCAAATTTGGAC
65 ATTAAGAGGACATTTCTAT-AAGCATTCAAATTGGGAC
* * * *
32857235 AAAATGGACTGT--T-----A-T-----GCCAAATTGCCTTGCCAAAATTTGATTGAATGTAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
*
32857287 TTAAGAGGACATTTCTAT-AGACATTCAAATTGGTAC
66 TTAAGAGGACATTTCTATAAG-CATTCAAATTGGGAC
* * * * * *
32857323 GAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAA-TTGATTGAATGCAGAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * * * * * *
32857387 TTAAGAAGACATTTTTATAAGTAATAAAATTAGCAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * * * * *
32857423 AAAATGGACTTTCATGCCAAACTACCAAACCAAACTTCACTGCCAAAATTTGATTAAATGCAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * * *
32857488 TTAAGAAGACAATTCTATAAGCGTTTAAATTGGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
** * * ** * * * *
32857524 GAAATGGACTGTCATGCCAAACTGTCTAACCAAACTTTCCTACCAAAATTTGATTGAATTCGAAC
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * *
32857589 TTACA-ATGACATTTCTATAAACATTCAAATTGAGAC
66 TTA-AGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * * *
32857625 GAAATTGACTGTCATGGCAAACTACCCAACCAAACTACCGTGCCAAAA-TTGATTGAATGCAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * *
32857689 TTAAGAGAACATTTCTATAAGAATTCAAATTGGAAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * *
32857725 GAAATGAACAGTCATGCCAAACTACCCAGCCAAACTACCATGCCAAAA-TTGATTGAATGCAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* *
32857789 TTAAGAGAACATTTCTATAAGAATTCAAATTGGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * * *
32857825 GAAATGGACGGTCATGCCAAACTACCCAACCAAACTGCCATGCTACAA-TTGATTGAATGCAAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
*
32857889 TTAAGAGGACATTTCTATAAGCATTCAAATTGGTAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * * * * *
32857925 GAAATTGACTGTCATACTAAACTGCCCAGCCAAATTGCCCTACCAAAA-TTGATT-AATGCAAAT
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * ** * *
32857988 TTTAGAGGGCATTTCTATAAAAATTTAAATAGGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
* * * * **
32858024 AAAATGGACTGACACGCCTAACTACTGAGCCAAA
1 GAAATGGACTGTCATGCCAAACTACCCAGCCAAA
32858058 ATTTGATTGC
Statistics
Matches: 1604, Mismatches: 316, Indels: 140
0.78 0.15 0.07
Matches are distributed among these distances:
85 61 0.04
86 4 0.00
87 126 0.08
88 83 0.05
89 4 0.00
90 2 0.00
92 4 0.00
93 2 0.00
94 4 0.00
95 2 0.00
96 1 0.00
97 3 0.00
98 9 0.01
99 67 0.04
100 501 0.31
101 727 0.45
102 4 0.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.27
Consensus pattern (101 bp):
GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
Found at i:32856203 original size:13 final size:13
Alignment explanation
Indices: 32856185--32856209 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32856175 GGACGGTCAT
32856185 GCCAAACTACCCA
1 GCCAAACTACCCA
32856198 GCCAAACTACCC
1 GCCAAACTACCC
32856210 TGCCTTAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.48, G:0.08, T:0.08
Consensus pattern (13 bp):
GCCAAACTACCCA
Found at i:32856329 original size:202 final size:201
Alignment explanation
Indices: 32854692--32859995 Score: 3686
Period size: 202 Copynumber: 27.0 Consensus size: 201
32854682 ATTACAATGT
* * ** * *
32854692 CAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATATAAAATTAAGATGATATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * *
32854757 TAAG-AGTTCAAATATGGACGAAATAGACTGTCATGCCAAACTACCCAGCTAAATTTCCCAGCCA
66 TAAGCA-TTCAAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC-
*
32854821 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCAATACA-CATTCAAATTGGGACGAAAT--A
129 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA-AGCATTCAAATTGGGACGAAATGGA
*
32854883 --GACATGC
193 CTGTCATGC
* * * * *
32854890 CAAACTACCCAGCTAAA-TATCGCTGCCAAAATTTGATTCAATGCAAAATTAAAAGGACATTTCG
1 CAAACTACCCAGCCAAACT-TCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * *
32854954 ATACA-CATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTGCCCAGCCAAACTTCCCTGCC
65 ATA-AGCATTCAAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC
** * * * * *
32855018 AAAACTGATTGAATGTAAAATTAAAAGGAAATTTCTATAAGCATCCAAATTGGGTCGAAATGGAC
129 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
*
32855083 TGTCAAGC
194 TGTCATGC
* ** **
32855091 CAAATTACCCAGCCAAACAACCCTGCCAATTTTTGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * * **
32855156 TAAGCATTCAAA-TTGAGACAAAATAGACTATCATGCAAAACCATCCAACCAAACTGTCCTGCCA
66 TAAGCATTCAAATTTG-GACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC-
* * * * * * *
32855220 AAAGTTGATTGAATGCAAAATTAAGAGTACTTTTCAATAAACATTCAAATTGGTACGAAATGAAC
129 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
*
32855285 TGTCATGT
194 TGTCATGC
* * * *
32855293 CAAACTACCCAGCCAAA-TTGCCATG-CAAAAATTGATTGAATGCAAAATTAAGAGAACATTTTT
1 CAAACTACCCAGCCAAACTT-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * * *
32855356 CTAAGCATTAAAATTGGGACGAAATGGAATGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCA
65 ATAAGCATTCAAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC-
* * * * ** *
32855421 AAATTTGTTTGAATGCAGAATTAAGAAGAAATTTCTATAAGCATTCAAAAAGGGACAAAATGGAC
129 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
*
32855486 AGTCATGC
194 TGTCATGC
* * *
32855494 CAAACTACCTTATG--AAACTGCCCTG-CAAAACTTTGATTGAATGCAATATTAAGAGGACATTT
1 CAAACTACC-CA-GCCAAACTTCCCTGCCAAAA-TTTGATTGAATGCAAAATTAAGAGGACATTT
** * * * * * * * * * *
32855556 AAATAGGAACTCCAATTGGGACGAAATAGATTGTCATGCCAAACTACCCAACCAAACTGCCCTTC
63 CTATAAGCATTCAAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCC-TG
* * * * *
32855621 CCAAATTTGATTGAATGACACAA-TAAAAGGACATTTCTATAAGCACTCAAATTGGGATGAAATA
127 CCAAATTTGATTGAATG-CAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
32855685 GA-TGGTCATGC
191 GACT-GTCATGC
* * * * *
32855696 CAAACTACCCAGCCAAA-TTGCCATGCTAAAA-TTGATTGAATACAAAATTAATAGGATATTTCT
1 CAAACTACCCAGCCAAACTT-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
** * * * *
32855759 ATAAGCATTCAAA-TTGAGATAAAATGGACTGTTATGCAAAACTACCCAGCCAAACTACCTTGGC
65 ATAAGCATTCAAATTTG-GACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC
* * * * * * * *
32855823 AAAATTGATTGAACGCCAAATTCAGAGGACAATCCTAAAAGCATTCAAATTGGGACGAAATGGAT
129 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
*
32855888 TGTCATTC
194 TGTCATGC
* ** * *
32855896 CAAACTATCTGACCAAATTACGCAGCAAAATTGACAGCCAAAATTTGATTGAATGCAAAACTAAG
1 CAAACTA-C---CC-----A-GC--CAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAG
* * * * *** * * *
32855961 AGGA-A-TT-GA-AATGGA--C-AATCAT-G-C-AAA--AACACCCA-GCCAAATTTCCCTGCC-
54 AGGACATTTCTATAA-GCATTCAAAT-TTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * *
32856012 AA-----------AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGTAGTCAAATTGA
117 AACTACCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGG
* *
32856066 GACGAAATGGACTGTTAAGC
182 GACGAAATGGACTGTCATGC
* * ** * * * * *
32856086 CAAACTTCCAAGCCAAACAGCCCTACCAATATTTGATTGAATGAAAAATTAAGAAGTCATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
32856151 TAAGCATTGAAATTTGGACGAAATGGACGGTCATGCCAAACTACCCAGCCAAACTACCCTGCCTT
66 TAAGCATTCAAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC-A
* * * * * * *
32856216 AATTTGAGTAAATGAAAAATTAATATGACATTTCTGTAAG-AGTTCAAATAT-GGATGAAATGGA
130 AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAAT-TGGGACGAAATGGA
*
32856279 CAGTCATGC
193 CTGTCATGC
* * * * *
32856288 CAAACTACCCAGCCAAATTTCCCAGCCAAAATTTTATTGAATGTAAAATTAAGAGGACATTTCGA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * * **
32856353 TAAACTTTCAAATTGGGACGAAATGCACTGTCATGCCAAACTACCCAGCCAACCTTCTCTGTTGA
66 TAAGCATTCAAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTG-CCA
* * *
32856418 AA-TTGACTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGAACT
130 AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
* *
32856482 GCCACGC
195 GTCATGC
* * * * * *
32856489 CAAACTACCTAGCCAAACTGCCC-GACCAATATTTTATTGAATGAAAAATTATGAGGACATTT-T
1 CAAACTACCCAGCCAAACTTCCCTG-CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * *
32856552 AATAAACATTC--ATGTTGGAACGAAATGAACTGTCATGCCAAACTATCAAGCCAAACTACCCTA
65 -ATAAGCATTCAAAT-TTGG-ACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTG
* * * *
32856615 CGAATATTTGATTGATTGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATG
127 CCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
*
32856680 AACTG---TGC
191 GACTGTCATGC
* * * *
32856688 CAAACT----A--C---C-T---TGTCAAAATTTGATTGAATGTAAAATTAAAAGGACATTACTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * *
32856740 TAAACATTCAAA-TTGGTACGAAATGGACTGTCATGCCAATCTACCTAGCCAAACTGCCATGCCA
66 TAAGCATTCAAATTTGG-ACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * *
32856804 TAA-TTGATTGAATACAAAATTATGAGAACATTTCTATAAGCATT-AAATTTGGGACGAAATGGA
130 -AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA-TTGGGACGAAATGGA
32856867 CTG---T--
193 CTGTCATGC
* * *
32856871 --AA-T-----GCCAAACTGCCCT-ACAAAATTTGATTGAATGCAAAATTAAGAGGATATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
*** * * ** *
32856927 TAATTTTTTAAATTCGGACGAAATAAAC--T-AT--C--A-T-----GCCACACTACCCTGCCAA
66 TAAGCATTCAAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * * * **
32856979 AATTGATTGAATGCTAAATTAAGAGAACATTTCTATAAGCATTCAAATTGCGACGAAATAGACAA
131 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
*
32857044 TCAAGC
196 TCATGC
* * * *
32857050 CAAACTACCCAGTCAAACTGT-CCTGCCAATATTTGATTGAATGCACAATTAAGAGGCCATTTCT
1 CAAACTACCCAGCCAAACT-TCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* ** * * * * * * *
32857114 ATAAACATTCAAATTAAGACGAAATGAAC-GTTCATGCCAAAATAACAAGCCAAACTATCTTGTC
65 ATAAGCATTCAAATTTGGACGAAATGGACTG-TCATGCCAAACTACCCAGCCAAACTACCCTGCC
* * * *
32857178 AATAGTTGATTGAATGCAAAATTAAGAGGACATTTCT-TAAAGCGTTCAAATTTGGACAAAATGG
129 AA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AAGCATTCAAATTGGGACGAAATGG
*
32857242 ACTGTTATGC
192 ACTGTCATGC
* *
32857252 CAAA-T----TG-C---C-T---TGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * *
32857304 T-AGACATTCAAA-TTGGTACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACC
66 TAAG-CATTCAAATTTGG-ACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC
* * * * * * * * * *
32857367 AAAATTGATTGAATGCAGAATTAAGAAGACATTTTTATAAGTAATAAAATTAGCACAAAATGGAC
129 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
*
32857432 TTTCATGC
194 TGTCATGC
* * * * * *
32857440 CAAACTACCAAACCAAACTTCACTGCCAAAATTTGATTAAATGCAAAATTAAGAAGACAATTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * ** * * ** *
32857505 TAAGCGTTTAAATTGGGACGAAATGGACTGTCATGCCAAACTGTCTAACCAAACTTTCCTACCAA
66 TAAGCATTCAAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC-A
* * * * * * *
32857570 AATTTGATTGAATTCGAACTTACA-ATGACATTTCTATAAACATTCAAATTGAGACGAAATTGAC
130 AATTTGATTGAATGCAAAATTA-AGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
*
32857634 TGTCATGG
194 TGTCATGC
* * * *
32857642 CAAACTACCCAACCAAACTACCGTGCCAAAA-TTGATTGAATGCAAAATTAAGAGAACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * *
32857706 TAAGAATTCAAA-TTGGAACGAAATGAACAGTCATGCCAAACTACCCAGCCAAACTACCATGCCA
66 TAAGCATTCAAATTTGG-ACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * * *
32857770 AAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGAATTCAAATTGGGACGAAATGGACG
130 AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
32857835 GTCATGC
195 GTCATGC
* * * * *
32857842 CAAACTACCCAACCAAACTGCCATGCTACAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * *
32857906 TAAGCATTCAAA-TTGGTACGAAATTGACTGTCATACTAAACTGCCCAGCCAAATTGCCCTACCA
66 TAAGCATTCAAATTTGG-ACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * * * ** * * *
32857970 AAATTGATT-AATGCAAATTTTAGAGGGCATTTCTATAAAAATTTAAATAGGGACAAAATGGACT
130 AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
* *
32858034 GACACGC
195 GTCATGC
* * *
32858041 CTAACTA--CTG----A-------GCCAAAATTTGATTGCATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * * * * * *
32858093 TAA-TAGTTCAAATTGGGACGAAGA-GGACAGTCATGCAAAAATTCCCAACCAAATTTCCTTCCC
66 TAAGCA-TTCAAATTTGGACGAA-ATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC
* * * * *
32858156 AAAATTTGATT-AATTGC-AAATTAAAAATGACATTTCGATACA-CAATCAAATTGGGATGAAAT
129 -AAATTTGATTGAA-TGCAAAATT-AAGAGGACATTTCTATA-AGCATTCAAATTGGGACGAAAT
32858218 GGACTGTCATGC
190 GGACTGTCATGC
*
32858230 AAAACTACCCAGCCAAACTTCCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* ** * * * * * *
32858294 TAAACATTCAAA-TTGGTACGAAATTAACAGTCATGCCAAACAACCCAACCAAATTGCCCTACCA
66 TAAGCATTCAAATTTGG-ACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * * * * **
32858358 ATATTTGATTGTATGCAAAATTAAGAGGACATTTCTATAGGTATTCAAATTAGGACAAAATAAAC
130 A-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
32858423 TGTCATGC
194 TGTCATGC
* ** * * * * * *
32858431 CAAACAACCCAGCCAAACAGCCCTTCCAATATTTGCTTGAATGAAAAATTAAGAAGTCATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* *
32858496 TAAGCATT-ATAATTGGGACGAAATGGACTGTCATGCCAAACT-----G------T--TCTGCCA
66 TAAGCATTCA-AATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * * * * **
32858547 AAATTAATTGAACGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGTACGAAATGGAAA
130 AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
* *
32858612 ATCATAC
195 GTCATGC
* * * * * * * *
32858619 CAAACTACTCAGCTAAA-TTGTCCTGCGAACATTTGATTTAATGTAAAATCAAGAGGACATTTCT
1 CAAACTACCCAGCCAAACTT-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * *
32858683 ATAGGCATTCAAATTGGGACGAAATAGACTGTCATGCCAAACTACCTAGCCAAAC-AGCCCGGCC
65 ATAAGCATTCAAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTA-CCCTGCC
* * *** *
32858747 AATGTTTGCTTGAATGCAAAATTAAGAACTCATTTCTATAAGCATT-ATACTTGGGACGAAATGG
129 AA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA-AATTGGGACGAAATGG
*
32858811 ATTGTCATGC
192 ACTGTCATGC
* * * * *
32858821 CAAACTACCCCGCCAAACTACCTTGCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * *
32858886 TAAACATTCAAATTTGGACAAAATGAATTGTC--G------T-----GACAAACTTCCATGCCAA
66 TAAGCATTCAAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * * * *
32858938 AATTGATTGAATGCAAAATTAAAATGACATTTTTATAAGCATTAAAATTGGGACGAAATGGACTA
131 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
*
32859003 TCAAGC
196 TCATGC
* * * * * *
32859009 CAAACTACCTAGCTAAACTGCCCTACCAATATTTTATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * * *
32859074 TAAGCATTCAAA-TTGGGCTAAAATGGAATGTCATGCCAAACTACCAATCCCAAACAACCTTGCT
66 TAAGCATTCAAATTTGGAC-GAAATGGACTGTCATGCCAAACTACCCA-GCCAAACTACCCTGCC
* * * * * *
32859138 AGAATTTGATTGAATGCAAAATTAAGAGAATATTTCTATAAGCATTAAAATTAGAACAAAATGGA
129 A-AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGA
*
32859203 CTATCATGC
193 CTGTCATGC
* * * * * * * *
32859212 CAAACTATCCAGCCATACTACTCTGCCAAAATTTGATTGAATTCAAAATTAAGAGAATATTTTTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * *
32859277 TAAACATTCAAATTGGGACAAAATGGACTATCATGCCAAACT-----G------T--CCTGCCAT
66 TAAGCATTCAAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA-
* * * ** *
32859329 AATTTGATGGAATGCAAAATTAAGAAGAGATTTCTATAAGCATTCAAATTAAGACGAATTGGAC-
130 AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
32859393 -T-AT--
195 GTCATGC
*** ** * *
32859396 --AA-T-----GTTGAACGACCCAGCCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * * * ** *
32859453 TAAGTATTCAAAATTGGGTCAAAATGTACTATAATGTCAAACTACCCAATCAAACTGCCCTGCCA
66 TAAGCATTC-AAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC-
* * * * * * * *
32859518 AAATTAGATTAAATGTAAAATTAA-AAGAAATTTCTATAAGCATTAAAATTGGGATGAAATTGAC
129 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
*
32859582 TATCATGC
194 TGTCATGC
*
32859590 CAAACTACCCAGCAAAACTACCTAGCAAAACTTACTTGCCAAAATTTGATTGAATGCAAAATTAA
1 CAAACTACCCAGCCAAACT---T--C----C---C-TGCCAAAATTTGATTGAATGCAAAATTAA
* * * * * * * * *
32859655 GAGGACATTTCTATAAACATTAAAAATGGGACGAAATGTACAGTCACAG-GAAACTACACAGCCA
53 GAGGACATTTCTATAAGCATTCAAATTTGGACGAAATGGACTGTCA-TGCCAAACTACCCAGCCA
* * * * * ** *
32859719 AA-TAGCCATACCAAAATTGATGGAATTCAAAATT-A-A-GACATTTCTATGTGTATTCAAATTG
117 AACTA-CCCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG
*
32859780 GGACGAAATGCACATG-CATG-
181 GGACGAAATGGAC-TGTCATGC
* * * *
32859800 -----T----A---AAACTACCCTGCCAAAATTTGATTGAAAGAAAAATTAAGTA-GACATTTTT
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCT
* * ** *
32859852 ATAAGGATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAG-CAAATCTGTCCTACC
65 ATAAGCATTCAAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA-CTACCCTGCC
* * *
32859916 AAAATTTGATTGGATTCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGTA
129 -AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGA
*
32859981 CTATCATGC
193 CTGTCATGC
32859990 CAAACT
1 CAAACT
32859996 GCCCTATCGG
Statistics
Matches: 3991, Mismatches: 834, Indels: 565
0.74 0.15 0.10
Matches are distributed among these distances:
173 2 0.00
174 66 0.02
175 3 0.00
176 49 0.01
177 29 0.01
178 32 0.01
179 2 0.00
180 5 0.00
181 10 0.00
182 6 0.00
183 1 0.00
184 15 0.00
185 134 0.03
186 118 0.03
187 147 0.04
188 429 0.11
189 294 0.07
190 95 0.02
191 8 0.00
192 2 0.00
193 6 0.00
194 2 0.00
195 4 0.00
196 6 0.00
197 56 0.01
198 109 0.03
199 74 0.02
200 266 0.07
201 826 0.21
202 828 0.21
203 167 0.04
204 6 0.00
205 4 0.00
207 4 0.00
208 1 0.00
209 4 0.00
210 5 0.00
211 37 0.01
212 14 0.00
213 41 0.01
214 37 0.01
215 47 0.01
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (201 bp):
CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
TAAGCATTCAAATTTGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
TCATGC
Found at i:32856946 original size:87 final size:87
Alignment explanation
Indices: 32856787--32857059 Score: 275
Period size: 87 Copynumber: 3.1 Consensus size: 87
32856777 AATCTACCTA
* * * * * *
32856787 GCCAAACTGCCATGCCATAATTGATTGAATACAAAATTATGAGAACATTTCTATAAGCATTAAAT
1 GCCAAACTACCCTGACAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTAAAT
* ** *
32856852 TTGGGACGAAATGGACTGTAAT
66 TTCGGACGAAATAAACTATAAT
* * * ***
32856874 GCCAAACTGCCCT-ACAAAATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAATTTTTTAA
1 GCCAAACTACCCTGACAAAA-TTGATTGAATGCAAAATTAAGAGAACATTTCTATAA-GCATTAA
*
32856938 A-TTCGGACGAAATAAACTATCAT
64 ATTTCGGACGAAATAAACTATAAT
* * *
32856961 GCCACACTACCCTGCCAAAATTGATTGAATGCTAAATTAAGAGAACATTTCTATAAGCATTCAAA
1 GCCAAACTACCCTGACAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATT-AAA
* * *
32857026 TTGC-GACGAAATAGACAATCAA-
65 TTTCGGACGAAATAAACTAT-AAT
32857048 GCCAAACTACCC
1 GCCAAACTACCC
32857060 AGTCAAACTG
Statistics
Matches: 151, Mismatches: 29, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
86 6 0.04
87 132 0.87
88 13 0.09
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.27
Consensus pattern (87 bp):
GCCAAACTACCCTGACAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTAAAT
TTCGGACGAAATAAACTATAAT
Found at i:32857314 original size:88 final size:88
Alignment explanation
Indices: 32857183--32857343 Score: 227
Period size: 88 Copynumber: 1.8 Consensus size: 88
32857173 TTGTCAATAG
* *
32857183 TTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCGTTCAAATTTGG-ACAAAATGGACTGT
1 TTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCATTCAAA-TTGGTACAAAATGGACTAT
*
32857247 TATGCCAAATTGCCTTGCCAAAAT
65 AATGCCAAATTGCCTTGCCAAAAT
* * * *
32857271 TTGATTGAATGTAAAATTAAGAGGACATTTC-TATAGACATTCAAATTGGTACGAAATTGACTAT
1 TTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAG-CATTCAAATTGGTACAAAATGGACTAT
32857335 AATGCCAAA
65 AATGCCAAA
32857344 CTACCCAGCC
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
87 8 0.12
88 56 0.88
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (88 bp):
TTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCATTCAAATTGGTACAAAATGGACTATA
ATGCCAAATTGCCTTGCCAAAAT
Found at i:32857398 original size:100 final size:99
Alignment explanation
Indices: 32857251--32858048 Score: 745
Period size: 100 Copynumber: 8.0 Consensus size: 99
32857241 GACTGTTATG
* * *
32857251 CCAAATTGCCTTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAGACATTCAAA
1 CCAAACTGCC-TGCCAAAA-TTGATTGAATGCAAAATTAAGAAGACATTTCTATAGACATTCAAA
* * * *
32857316 TTGGTACGAAATTGACTATAATGCCAAACTACCCAG
64 TTGGGACGAAATTGACTGTCATGCCAAACTACCCAA
* * * *
32857352 CCAAACTGCTCTACCAAAATTGATTGAATGCAGAATTAAGAAGACATTTTTATAAGTA-A-TAAA
1 CCAAACTGC-CTGCCAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTAT-AG-ACATTCAA
* * * * * *
32857415 ATTAGCACAAAATGGACTTTCATGCCAAACTACCAAA
63 ATTGGGACGAAATTGACTGTCATGCCAAACTACCCAA
* * * * *
32857452 CCAAACTTCACTGCCAAAATTTGATTAAATGCAAAATTAAGAAGACAATTCTATA-AGCGTTTAA
1 CCAAACTGC-CTGCCAAAA-TTGATTGAATGCAAAATTAAGAAGACATTTCTATAGA-CATTCAA
* ** *
32857516 ATTGGGACGAAATGGACTGTCATGCCAAACTGTCTAA
63 ATTGGGACGAAATTGACTGTCATGCCAAACTACCCAA
* * * * * * *
32857553 CCAAACTTTCCTACCAAAATTTGATTGAATTCGAACTTACA-ATGACATTTCTATAAACATTCAA
1 CCAAAC-TGCCTGCCAAAA-TTGATTGAATGCAAAATTA-AGAAGACATTTCTATAGACATTCAA
* *
32857617 ATTGAGACGAAATTGACTGTCATGGCAAACTACCCAA
63 ATTGGGACGAAATTGACTGTCATGCCAAACTACCCAA
*
32857654 CCAAACTACCGTGCCAAAATTGATTGAATGCAAAATTAAG-AGAACATTTCTATAAGA-ATTCAA
1 CCAAACTGCC-TGCCAAAATTGATTGAATGCAAAATTAAGAAG-ACATTTCTAT-AGACATTCAA
* * *
32857717 ATTGGAACGAAA-TGAACAGTCATGCCAAACTACCCAG
63 ATTGGGACGAAATTG-ACTGTCATGCCAAACTACCCAA
*
32857754 CCAAACTACCATGCCAAAATTGATTGAATGCAAAATTAAG-AGAACATTTCTATAAGA-ATTCAA
1 CCAAACTGCC-TGCCAAAATTGATTGAATGCAAAATTAAGAAG-ACATTTCTAT-AGACATTCAA
* *
32857817 ATTGGGACGAAATGGACGGTCATGCCAAACTACCCAA
63 ATTGGGACGAAATTGACTGTCATGCCAAACTACCCAA
* * *
32857854 CCAAACTGCCATGCTACAATTGATTGAATGCAAAATTAAGAGGACATTTCTATA-AGCATTCAAA
1 CCAAACTGCC-TGCCAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAGA-CATTCAAA
* * * * *
32857918 TTGGTACGAAATTGACTGTCATACTAAACTGCCCAG
64 TTGGGACGAAATTGACTGTCATGCCAAACTACCCAA
* * * * * * * * *
32857954 CCAAATTGCCCTACCAAAATTGATT-AATGCAAATTTTAGAGGGCATTTCTATAAAAATTTAAAT
1 CCAAACTG-CCTGCCAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAGACATTCAAAT
* * * * * *
32858018 AGGGACAAAATGGACTGACACGCCTAACTAC
65 TGGGACGAAATTGACTGTCATGCCAAACTAC
32858049 TGAGCCAAAA
Statistics
Matches: 583, Mismatches: 93, Indels: 44
0.81 0.13 0.06
Matches are distributed among these distances:
98 2 0.00
99 58 0.10
100 338 0.58
101 178 0.31
102 7 0.01
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.26
Consensus pattern (99 bp):
CCAAACTGCCTGCCAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAGACATTCAAATT
GGGACGAAATTGACTGTCATGCCAAACTACCCAA
Found at i:32857458 original size:289 final size:286
Alignment explanation
Indices: 32856118--32859417 Score: 1412
Period size: 289 Copynumber: 11.3 Consensus size: 286
32856108 CTACCAATAT
* * * * * **
32856118 TTGATTGAATGAAAAATTAAGAAGTCATTTCTATAAGCATTGAAATTTG-GACGAAATGGACGGT
1 TTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAA-TTGAGACGAAATTGACTAT
* * * * * * * * * * *
32856182 CATGCCAAACTACCCAGCCAAACTACCCTGCCTTAATTTGAGTAAATGAAAAATTAATATGACAT
65 AATGCCAAACTACCCAGCCAAACTGCTCTACC-AAAATTGATTGAATG-CAAATTAAGAAGACAT
* * * * * * * *
32856247 TTCTGTAAGAGTTCAAATATGGATGAAATGGACAGTCATGCCAAACTACCCAGCCAAA-TTTCCC
128 TTCTATAAGA-ATCAAAT-TAGACGAAATGAACATTCATGCCAAACTACCAAGCCAAACTAT--C
* * * * *
32856311 A-GCCAAAATTTTATTGAATGTAAAATTAAGAGGACATTTCGATAAACTTTCAAATTGGGACGAA
189 ATGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGGACGAA
* * *
32856375 ATGCACTGTCATGCCAAACTACCCAGCCAACCTT-CTCTGTTGAAA
253 ATGGACTGTCATGCCAAACT---CTG----CCTTGC-C----AAAA
* * * * **
32856420 TTGACTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAA-TGAACTGC
1 TTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAGACGAAATTG-ACTAT
* * * * * * * * * *
32856484 CACGCCAAACTACCTAGCCAAACTGCCCGACCAATATTTTATTGAATGAAAAATTATGAGGACAT
65 AATGCCAAACTACCCAGCCAAACTGCTCTACCAA-AATTGATTGAATG-CAAATTAAGAAGACAT
** * * *
32856549 TT-TAATAA-ACATTCATGTTGGAACGAAATGAAC-TGTCATGCCAAACTATCAAGCCAAACTAC
128 TTCT-ATAAGA-A-TCAAATTAG-ACGAAATGAACAT-TCATGCCAAACTACCAAGCCAAACTAT
* * * * * * * *
32856611 CCTACGAATATTTGATTGATTGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAA
188 CATGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGGACGA
* * *
32856676 AATGAACTG---TGCCAAA--CTACCTTGTCAAAA
252 AATGGACTGTCATGCCAAACTCTGCCTTGCCAAAA
* * * * *
32856706 TTTGATTGAATGTAAAATTAAAAGGACATTACTATAAACATTCAAATTG-GTACGAAATGGACTG
1 -TTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAG-ACGAAATTGACTA
* * * * * * *
32856770 TCATGCCAATCTACCTAGCCAAACTGC-CATGCCATAATTGATTGAATACAAAATTATG-AGAAC
64 TAATGCCAAACTACCCAGCCAAACTGCTC-TACCAAAATTGATTGAATGC-AAATTAAGAAG-AC
* * * * *
32856833 ATTTCTATAAGCATTAAATTTGGGACGAAATGGAC-TGTAATGCCAAACT-----GCC---CTA-
126 ATTTCTATAAGAATCAAA-TT-AGACGAAATGAACAT-TCATGCCAAACTACCAAGCCAAACTAT
* * *** * *
32856888 CA----AAATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAATTTTTTAAATTCGGACGAA
188 CATGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGGACGAA
** * *
32856949 ATAAACTATCATGCCACACTAC--CC-TGCCAAAA
253 ATGGACTGTCATGCCAAACT-CTGCCTTGCCAAAA
* * * *
32856981 TTGATTGAATGCT-AAATTAAGAGAACATTTCTATAAGCATTCAAATTGCGACGAAATAGACAAT
1 TTGATTGAATG-TAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAGACGAAATTGACTAT
* * * * *
32857045 CAA-GCCAAACTACCCAGTCAAACTG-TCCTGCCAATATTTGATTGAATGCACAATTAAGAGGCC
65 -AATGCCAAACTACCCAGCCAAACTGCT-CTACCAA-AATTGATTGAATGCA-AATTAAGAAGAC
* * *
32857108 ATTTCTATAA-ACATTCAAATTAAGACGAAATGAACGTTCATGCCAAAATAACAAGCCAAACTAT
126 ATTTCTATAAGA-A-TCAAATT-AGACGAAATGAACATTCATGCCAAACTACCAAGCCAAACTAT
* * * * *
32857172 CTTGTCAATAGTTGATTGAATGCAAAATTAAGAGGACATTTCT-TAAAGCGTTCAAATTTGGACA
188 CATGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AAGCGTTCAAATTGGGACG
*
32857236 AAATGGACTGTTATGCCAAA-T-TGCCTTGCCAAAA
251 AAATGGACTGTCATGCCAAACTCTGCCTTGCCAAAA
32857270 TTTGATTGAATGTAAAATTAAGAGGACATTTCTAT-AGACATTCAAATTG-GTACGAAATTGACT
1 -TTGATTGAATGTAAAATTAAGAGGACATTTCTATAAG-CATTCAAATTGAG-ACGAAATTGACT
32857333 ATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGCAGAATTAAGAAGACA
63 ATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGCA-AATTAAGAAGACA
* * * * * *
32857398 TTTTTATAAGTAATAAAATTAGCACAAAATGGACTTTCATGCCAAACTACCAAACCAAACT-TCA
127 TTTCTATAAG-AATCAAATTAG-ACGAAATGAACATTCATGCCAAACTACCAAGCCAAACTATCA
* * * *
32857462 CTGCCAAAATTTGATTAAATGCAAAATTAAGAAGACAATTCTATAAGCGTTTAAATTGGGACGAA
190 -TGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGGACGAA
* *
32857527 ATGGACTGTCATGCCAAACTGTCTAACCAAACTTTCCTACCAAAA
253 ATGGACTGTCATGCCAAAC--TCT--GC---C--T--TGCCAAAA
* * * *
32857572 TTTGATTGAAT-TCGAACTTACA-ATGACATTTCTATAAACATTCAAATTGAGACGAAATTGACT
1 -TTGATTGAATGT-AAAATTA-AGAGGACATTTCTATAAGCATTCAAATTGAGACGAAATTGACT
* * * * * *
32857635 GTCATGGCAAACTACCCAACCAAACTAC-CGTGCCAAAATTGATTGAATGCAAAATTAAG-AGAA
63 ATAATGCCAAACTACCCAGCCAAACTGCTC-TACCAAAATTGATTGAATGC-AAATTAAGAAG-A
* * * *
32857698 CATTTCTATAAGAATTCAAATTGGAACGAAATGAACAGTCATGCCAAACTACCCAGCCAAACTAC
125 CATTTCTATAAGAA-TCAAATTAG-ACGAAATGAACATTCATGCCAAACTACCAAGCCAAACTAT
* **
32857763 CATGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGAATTCAAATTGGGACGAA
188 CATGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGGACGAA
* * * *
32857828 ATGGACGGTCATGCCAAACTACCCAACCAAACTGCCATGCTACAA
253 ATGGACTGTCATGCCAAACT-----------CTGCCTTGCCAAAA
* *
32857873 TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG-GTACGAAATTGACTGT
1 TTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAG-ACGAAATTGACTAT
* * * * * * * * *
32857937 CATACTAAACTGCCCAGCCAAATTGCCCTACCAAAATTGATT-AATGCAAATTTTAGAGGGCATT
65 AATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGCAAA-TTAAGAAGACATT
* * * * * *
32858001 TCTATAAAAATTTAAA-TAGGGACAAAATG--GA--C-TG----AC-A-C--GCCTAACTACTGA
129 TCTATAAGAA-TCAAATTA--GACGAAATGAACATTCATGCCAAACTACCAAGCCAAACTA-TCA
* **
32858052 -GCCAAAATTTGATTGCATGCAAAATTAAGAGGACATTTCTATAATAGTTCAAATTGGGACGAAG
190 TGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGGACGAA-
* * * * *
32858116 A-GGACAGTCATGCAAAAATTCCCAACCAAATTTCCTTCCCAAAA
253 ATGGACTGTCATGC-CAAA----C--TC----TGCCTTGCCAAAA
* * * * * * * *
32858160 TTTGATT-AAT-TGCAAATTAAAAATGACATTTCGATACA-CAATCAAATTGGGATGAAATGGAC
1 -TTGATTGAATGT-AAAATT-AAGAGGACATTTCTATA-AGCATTCAAATTGAGACGAAATTGAC
* * * * * * *
32858222 TGTCATGCAAAACTACCCAGCCAAACTTCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAC
62 TATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGC-AAATTAAGAAGAC
* * * * * *
32858287 ATTTCTATAA-ACATTCAAATTGGTACGAAATTAACAGTCATGCCAAACAACCCAA-CCAAATTG
126 ATTTCTATAAGA-A-TCAAATTAG-ACGAAATGAACATTCATGCCAAACTA-CCAAGCCAAACTA
* * * * * * ** * *
32858350 CCCTACCAATATTTGATTGTATGCAAAATTAAGAGGACATTTCTATAGGTATTCAAATTAGGACA
187 TCATGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGGACG
** * * *
32858415 AAATAAACTGTCATGCCAAACAACCCAGCCAAACAGCCCTT-CCAATAT
251 AAATGGACTGTCATG-C---CAA---A--C--TCTG-CCTTGCCAA-AA
* * * * * *
32858463 TTGCTTGAATGAAAAATTAAGAAGTCATTTCTATAAGCATT-ATAATTGGGACGAAATGGAC---
1 TTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCA-AATTGAGACGAAATTGACTAT
* * * * *
32858524 --TGTC--A-T-----GCCAAACTGTTCTGCCAAAATTAATTGAACGCAAAATTAA-AAGGACAT
65 AATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGC-AAATTAAGAA-GACAT
* * * * * * *
32858578 TTCTATAAGCATTCAAATTGGTACGAAATGGAA-AATCATACCAAACTACTC-AGCTAAATTGTC
128 TTCTATAAG-AATCAAATTAG-ACGAAAT-GAACATTCATGCCAAACTAC-CAAGCCAAACTATC
* * * * * * * *
32858641 CTGCGAACATTTGATTTAATGTAAAATCAAGAGGACATTTCTATAGGCATTCAAATTGGGACGAA
189 ATGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGGACGAA
* ** **
32858706 ATAGACTGTCATGCCAAACTACCTAGCCAAACAGCCCGGCCAATGT
253 ATGGACTGTCATGCCAAACT--CT---------GCCTTGCCAA-AA
* * *** * * * * *
32858752 TTGCTTGAATGCAAAATTAAGAACTCATTTCTATAAGCATT-ATACTTGGGACGAAATGGATTGT
1 TTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCA-AATTGAGACGAAATTGACTAT
* * * * *
32858816 CATGCCAAACTACCCCGCCAAACTAC-CTTGCCAATATTTGATTGAATGCAAAATTAAGAAGACA
65 AATGCCAAACTACCCAGCCAAACTGCTC-TACCAA-AATTGATTGAATGC-AAATTAAGAAGACA
* * ** *
32858880 TTTCTATAA-ACATTCAAATTTGGACAAAATG-A-A-T--TG------T--CGTGACAAACT-TC
127 TTTCTATAAGA-A-TCAAA-TTAGACGAAATGAACATTCATGCCAAACTACCAAGCCAAACTAT-
* * * * *
32858930 CATGCCAAAATTGATTGAATGCAAAATTAAAATGACATTTTTATAAGCATTAAAATTGGGACGAA
188 CATGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGGACGAA
* *
32858995 ATGGACTATCAAGCCAAACTACCTAG-CTAAACTGCCCTACCAATA
253 ATGGACTGTCATGCCAAACT--CT-GCCT----TG-CC-A--AA-A
* * * * * * *
32859040 TTTTATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG-GGCTAAAATGGAATG
1 -TTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAGAC-GAAATTGACTA
* * * ** * * *
32859104 TCATGCCAAACTACCAATCCCAAACAAC-CTTGCTAGAATTTGATTGAATGCAAAATTAAG-AGA
64 TAATGCCAAACTACCCA-GCCAAACTGCTC-TACCA-AAATTGATTGAATGC-AAATTAAGAAG-
* * * * * *
32859167 ATATTTCTATAAGCATTAAAATTAGAACAAAATGGAC-TATCATGCCAAACTATCC-AGCCATAC
124 ACATTTCTATAAG-AATCAAATTAG-ACGAAATGAACAT-TCATGCCAAACTA-CCAAGCCAAAC
* * * * * *
32859230 TACTC-TGCCAAAATTTGATTGAATTCAAAATTAAGAGAATATTTTTATAAACATTCAAATTGGG
185 TA-TCATGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGG
* * * *
32859294 ACAAAATGGACTATCATGCCAAACTGT-CC-TGCCATAAT
248 ACGAAATGGACTGTCATGCCAAACTCTGCCTTGCCA-AAA
* * * * *
32859332 TTGATGGAATGCAAAATTAAGAAGAGATTTCTATAAGCATTCAAATTAAGACG-AATTGGACTAT
1 TTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAGACGAAATT-GACTAT
*** *
32859396 AATGTTGAACGACCCAGCCAAA
65 AATGCCAAACTACCCAGCCAAA
32859418 ATTTGATTGA
Statistics
Matches: 2365, Mismatches: 393, Indels: 492
0.73 0.12 0.15
Matches are distributed among these distances:
272 54 0.02
273 2 0.00
274 78 0.03
275 70 0.03
276 8 0.00
277 1 0.00
278 4 0.00
280 6 0.00
281 5 0.00
282 1 0.00
283 4 0.00
284 2 0.00
285 8 0.00
286 75 0.03
287 161 0.07
288 106 0.04
289 609 0.26
290 176 0.07
291 63 0.03
292 6 0.00
293 5 0.00
294 10 0.00
295 7 0.00
296 3 0.00
297 4 0.00
298 8 0.00
299 45 0.02
300 90 0.04
301 99 0.04
302 487 0.21
303 80 0.03
304 74 0.03
305 5 0.00
306 5 0.00
308 2 0.00
310 2 0.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (286 bp):
TTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAGACGAAATTGACTATA
ATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGCAAATTAAGAAGACATTTC
TATAAGAATCAAATTAGACGAAATGAACATTCATGCCAAACTACCAAGCCAAACTATCATGCCAA
AATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGGACGAAATGGACTG
TCATGCCAAACTCTGCCTTGCCAAAA
Found at i:32857769 original size:13 final size:14
Alignment explanation
Indices: 32857737--32857771 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
32857727 AATGAACAGT
32857737 CATGCCAAACTACC
1 CATGCCAAACTACC
32857751 CA-GCCAAACTA-C
1 CATGCCAAACTACC
32857763 CATGCCAAA
1 CATGCCAAA
32857772 ATTGATTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 3 0.15
13 15 0.75
14 2 0.10
ACGTcount: A:0.40, C:0.40, G:0.09, T:0.11
Consensus pattern (14 bp):
CATGCCAAACTACC
Found at i:32858532 original size:101 final size:100
Alignment explanation
Indices: 32858052--32859995 Score: 1171
Period size: 101 Copynumber: 19.8 Consensus size: 100
32858042 TAACTACTGA
* * * *
32858052 GCCAAAATTTGATTGCATGCAAAATTAAGAGGACATTTCTATAA-TAGTTCAAATTGGGACGAAG
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCA-TTCAAATTGGGACGAA-
* * * * * ** *
32858116 A-GGACAGTCATGCAAAAATTCCCAACCAAATTTCCTT
64 ATGGACTGTCATGCCAAACTACCCAGCCAAA-CACCCT
* * * * * *
32858153 CCCAAAATTTGATT-AATTGC-AAATTAAAAATGACATTTCGATACA-CAATCAAATTGGGATGA
1 GCCAATATTTGATTGAA-TGCAAAATTAAGAA-GACATTTCTATA-AGCATTCAAATTGGGACGA
* *
32858215 AATGGACTGTCATGCAAAACTACCCAGCCAAACTTCCCT
63 AATGGACTGTCATGCCAAACTACCCAGCCAAAC-ACCCT
* * * *
32858254 GCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGTACGAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
** * * * **
32858318 TAACAGTCATGCCAAACAACCCAACCAAATTGCCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAA-CACCCT
* * * * * * *
32858354 ACCAATATTTGATTGTATGCAAAATTAAGAGGACATTTCTATAGGTATTCAAATTAGGACAAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
** *
32858419 AAACTGTCATGCCAAACAACCCAGCCAAACAGCCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAACA-CCCT
* * * *
32858455 TCCAATATTTGCTTGAATGAAAAATTAAGAAGTCATTTCTATAAGCATT-ATAATTGGGACGAAA
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCA-AATTGGGACGAAA
**
32858519 TGGACTGTCATGCCAAACT-----G-------TTCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAACACCCT
* * * *
32858543 GCCAA-AATTAATTGAACGCAAAATTAA-AAGGACATTTCTATAAGCATTCAAATTGGTACGAAA
1 GCCAATATTTGATTGAATGCAAAATTAAGAA-GACATTTCTATAAGCATTCAAATTGGGACGAAA
*** * * * ***
32858606 TGGAAAATCATACCAAACTACTCAGCTAAATTGTCCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAA-CACCCT
* * * * * * *
32858643 GCGAACATTTGATTTAATGTAAAATCAAGAGGACATTTCTATAGGCATTCAAATTGGGACGAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * *
32858708 AGACTGTCATGCCAAACTACCTAGCCAAACAGCCCG
66 GGACTGTCATGCCAAACTACCCAGCCAAACA-CCCT
* * ** *
32858744 GCCAATGTTTGCTTGAATGCAAAATTAAGAACTCATTTCTATAAGCATT-ATACTTGGGACGAAA
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCA-AATTGGGACGAAA
* * *
32858808 TGGATTGTCATGCCAAACTACCCCGCCAAACTACCTT
65 TGGACTGTCATGCCAAACTACCCAGCCAAAC-ACCCT
* * *
32858845 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTTGGACAAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * * *
32858910 GAATTGTCGTGACAAACT------TC---CA---T
66 GGACTGTCATGCCAAACTACCCAGCCAAACACCCT
* * *
32858933 GCCAA-AATTGATTGAATGCAAAATTAA-AATGACATTTTTATAAGCATTAAAATTGGGACGAAA
1 GCCAATATTTGATTGAATGCAAAATTAAGAA-GACATTTCTATAAGCATTCAAATTGGGACGAAA
* * * * *
32858996 TGGACTATCAAGCCAAACTACCTAGCTAAACTGCCCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAAC-ACCCT
* * * *
32859033 ACCAATATTTTATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGG-CTAAAA
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGAC-GAAA
* * * *
32859097 TGGAATGTCATGCCAAACTACCAATCCCAAACAACCTT
65 TGGACTGTCATGCCAAACTACCCA-GCCAAAC-ACCCT
* * * * * *
32859135 GCTAGA-ATTTGATTGAATGCAAAATTAAG-AGAATATTTCTATAAGCATTAAAATTAGAACAAA
1 GCCA-ATATTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAA
* * * *
32859198 ATGGACTATCATGCCAAACTATCCAGCCATACTACTCT
64 ATGGACTGTCATGCCAAACTACCCAGCCAAAC-ACCCT
* * * * * *
32859236 GCCAAAATTTGATTGAATTCAAAATTAAG-AGAATATTTTTATAAACATTCAAATTGGGACAAAA
1 GCCAATATTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAA
* *
32859300 TGGACTATCATGCCAAACT-----G-------TCCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAACACCCT
* * ** *
32859324 GCC-ATAATTTGATGGAATGCAAAATTAAGAAGAGATTTCTATAAGCATTCAAATTAAGACGAAT
1 GCCAAT-ATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAA
* * *** *
32859388 TGGACTATAATGTTGAACGACCCAG-C---CA----
65 TGGACTGTCATGCCAAACTACCCAGCCAAACACCCT
* * * * *
32859416 ---AA-ATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGTATTCAAAATTGGGTCAAAA
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTC-AAATTGGGACGAAA
* * * * ** *
32859477 TGTACTATAATGTCAAACTACCCAATCAAACTGCCCT
65 TGGACTGTCATGCCAAACTACCCAGCCAAAC-ACCCT
* * * * * * *
32859514 GCCAAAATTAGATTAAATGTAAAATTAA-AAGAAATTTCTATAAGCATTAAAATTGGGATGAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * *
32859578 TGACTATCATGCCAAACTACCCAGCAAAACTACCTAGCAAAACTTACTT
66 GGACTGTCATGCCAAACTACCCAGC-CAA--A-C-A-C----C---C-T
* * * * *
32859627 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTAAAAATGGGACGAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * * * * *
32859692 GTACAGTCACAG-GAAACTACACAGCCAAATAGCCAT
66 GGACTGTCA-TGCCAAACTACCCAGCCAAACA-CCCT
* * * * ** *
32859728 ACCAA-AATTGATGGAATTCAAAATT---AAGACATTTCTATGTGTATTCAAATTGGGACGAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
*
32859789 GCACATG-CATG------T----A---AAACTACCCT
66 GGAC-TGTCATGCCAAACTACCCAGCCAAAC-ACCCT
* * * * * *
32859812 GCCAAAATTTGATTGAAAGAAAAATTAAGTAGACATTTTTATAAGGATTCAAATTGGGACGAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
**
32859877 GGACTGTCATGCCAAACTACCCAG-CAAATCTGTCCT
66 GGACTGTCATGCCAAACTACCCAGCCAAA-C-ACCCT
* * * * *
32859913 ACCAAAATTTGATTGGATTCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* *
32859978 GTACTATCATGCCAAACT
66 GGACTGTCATGCCAAACT
32859996 GCCCTATCGG
Statistics
Matches: 1439, Mismatches: 289, Indels: 230
0.73 0.15 0.12
Matches are distributed among these distances:
84 10 0.01
85 16 0.01
86 4 0.00
87 127 0.09
88 155 0.11
89 31 0.02
90 2 0.00
91 2 0.00
92 2 0.00
93 2 0.00
94 1 0.00
95 1 0.00
96 4 0.00
97 34 0.02
98 2 0.00
99 1 0.00
100 146 0.10
101 707 0.49
102 103 0.07
103 3 0.00
104 2 0.00
105 2 0.00
109 4 0.00
111 1 0.00
112 1 0.00
113 28 0.02
114 47 0.03
115 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (100 bp):
GCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAAT
GGACTGTCATGCCAAACTACCCAGCCAAACACCCT
Found at i:32858684 original size:390 final size:388
Alignment explanation
Indices: 32854692--32859995 Score: 2348
Period size: 390 Copynumber: 13.5 Consensus size: 388
32854682 ATTACAATGT
* * * * ** * *
32854692 CAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATATAAAATTAAGATGATATTTCTA
1 CAAACTACCTAGCTAAACTGCCCTACCAACATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *** *
32854757 TAAG-AGTTCAAATATGG-ACGAAA-TAGACTGTCATGCCAAACTACCCAGCTAAATTTCCCAGC
66 TAAGCA-TTCAAAT-TGGTACGAAATTA-ACTGTCATGCCAAACTACCCAACCAAACAGCCCTGC
* * * * *
32854819 CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCAATACA-CATTCAAATTGGGACGAAAT-
128 CAATATTTGATTGAATGCAAAATTAAGAGAACATTTCTATA-AGCATT-AAATTAGGACAAAATG
* * * * * *
32854882 -A--GACATGCCAAACTACCCAGCTAAA-TATCGCTGCCAAAATTTGATTCAATGCAAAATTAA-
191 GACTGTCATGCCAAACTACCCAGCCAAACTA-CCCTTCCAATATTTGATTGAATGCAAAATTAAG
* * * **
32854942 AAGGACATTTCGATACACATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTGCCCAGCCAA
255 AA-GTCATTTCTATAAACATTCAAATTGGGACAAAATGGACTGTCATGCCAAACT-----G----
* * * *
32855007 ACTTCCCTGCCAAAACTGATTGAATGTAAAATTAAAAGGAAATTTCTATAAGCATCCAAATTGGG
310 ---T-CCTGCCAAAATTGATTGAATGCAAAATTAAAA-GACATTTCTATAAGCATTCAAATTGGG
* ***
32855072 TCGAAATGGACTGTCAAGC
370 ACGAAATGGAAAATCAAGC
* * * ** * **
32855091 CAAATTACCCAGCCAAACAACCCTGCCAATTTTTGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCTAGCTAAACTGCCCTACCAACATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * *
32855156 TAAGCATTCAAATTGAG-AC-AAAATAGACTATCATGCAAAACCATCCAACCAAACTGTCCTGCC
66 TAAGCATTCAAATTG-GTACGAAATTA-ACTGTCATGCCAAACTACCCAACCAAACAGCCCTGCC
* * * * * * * *
32855219 AAAAGTTGATTGAATGCAAAATTAAGAGTACTTTTCAATAAACATTCAAATT-GGTACGAAATGA
129 AATATTTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATT-AAATTAGG-ACAAAATGG
* ** * * * *
32855283 ACTGTCATGTCAAACTACCCAGCCAAA-TTGCCATGCAAAAATTGATTGAATGCAAAATTAAG-A
192 ACTGTCATGCCAAACTACCCAGCCAAACTACCCTTCCAATATTTGATTGAATGCAAAATTAAGAA
* * * * * * *
32855346 GAACATTTTTCTAAGCATTAAAATTGGGACGAAATGGAATGTCATGCCAAACTACCTAGCCAAAC
257 G-TCATTTCTATAAACATTCAAATTGGGACAAAATGGACTGTCATGCC-AA--A-CT-G------
* * * **
32855411 TGCCCTGCCAAAATTTGTTTGAATGCAGAATTAAGAAGAAATTTCTATAAGCATTCAAAAAGGGA
310 T--CCTGCCAAAA-TTGATTGAATGCAAAATTAA-AAGACATTTCTATAAGCATTCAAATTGGGA
* * * *
32855476 CAAAATGGACAGTCATGC
371 CGAAATGGAAAATCAAGC
* * *
32855494 CAAACTACCTTA--TGAAACTGCCCT-GCAAAACTTTGATTGAATGCAATATTAAGAGGACATTT
1 CAAACTACC-TAGCT-AAACTGCCCTACCAACA-TTTGATTGAATGCAAAATTAAGAGGACATTT
** * * * * * * *
32855556 AAATAGGAACTCCAATTGGGACGAAA-TAGATTGTCATGCCAAACTACCCAACCAAACTGCCCTT
63 CTATAAGCATTCAAATTGGTACGAAATTA-ACTGTCATGCCAAACTACCCAACCAAACAGCCC-T
* * * * * * **
32855620 CCCAA-ATTTGATTGAATGACACAA-TAAAAGGACATTTCTATAAGCACTCAAATTGGGATGAAA
126 GCCAATATTTGATTGAATG-CAAAATTAAGAGAACATTTCTATAAGCA-TTAAATTAGGACAAAA
* * * * * * * *
32855683 TAGA-TGGTCATGCCAAACTACCCAGCCAAATTGCCATGCTAA-AATTGATTGAATACAAAATTA
189 TGGACT-GTCATGCCAAACTACCCAGCCAAACTACCCTTCCAATATTTGATTGAATGCAAAATTA
* * * * * * *
32855746 ATAGGAT-ATTTCTATAAGCATTCAAATTGAGATAAAATGGACTGTTATGCAAAACTACCCAGCC
253 AGAAG-TCATTTCTATAAACATTCAAATTGGGACAAAATGGACTGTCATGCCAAACT-----G--
* * * * * * * *
32855810 AAACTACCTTGGCAAAATTGATTGAACGCCAAATTCAGAGGACAATCCTAAAAGCATTCAAATTG
310 ----T-CC-TGCCAAAATTGATTGAATGCAAAATT-AAAAGACATTTCTATAAGCATTCAAATTG
*** **
32855875 GGACGAAATGGATTGTCATTC
368 GGACGAAATGGAAAATCAAGC
* * * * * * * *
32855896 CAAACTATCT-GACCAAATTACGC-AGCAA-A----ATTGACA-GCCAAAATT-TGATTGA-A-T
1 CAAACTACCTAG-CTAAACTGCCCTACCAACATTTGATTGA-ATG-CAAAATTAAGA-GGACATT
* * * * ** ** * * ***
32855950 GC-A-AA--ACT-AAGA--GGAATTGAAATGGACAATCATGCAAAAAC-ACCCAGCCAAATTTCC
62 TCTATAAGCATTCAA-ATTGGTA-CGAAATTAACTGTCATGC-CAAACTACCCAACCAAACAGCC
* * * * *
32856007 CTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGTAGTCAAATT-GAGACGA
124 CTGCCAATATTTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCA-TTAAATTAG-GACAA
* * * * * *
32856071 AATGGACTGTTAAGCCAAACTTCCAAGCCAAAC-AGCCCTACCAATATTTGATTGAATGAAAAAT
187 AATGGACTGTCATGCCAAACTACCCAGCCAAACTA-CCCTTCCAATATTTGATTGAATGCAAAAT
* * * * *
32856135 TAAGAAGTCATTTCTATAAGCATTGAAATTTGGACGAAATGGACGGTCATGCCAAACTACCCAGC
251 TAAGAAGTCATTTCTATAAACATTCAAATTGGGACAAAATGGACTGTCATGCCAAACT-----G-
* * * * * * *
32856200 CAAACTACCCTGCCTTAATTTGAGTAAATGAAAAATTAATATGACATTTCTGTAAG-AGTTCAAA
310 -----T--CCTGCC-AAAATTGATTGAATGCAAAATTAA-AAGACATTTCTATAAGCA-TTCAAA
* * * *
32856264 TAT-GGATGAAATGGACAGTCATGC
365 T-TGGGACGAAATGGAAAATCAAGC
* * * * * * * *
32856288 CAAACTACCCAGCCAAATTTCCC-AGCCAAAATTTTATTGAATGTAAAATTAAGAGGACATTTCG
1 CAAACTACCTAGCTAAACTGCCCTA-CCAACATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * ** * * ** * **
32856352 ATAAACTTTCAAATTGGGACGAAATGCACTGTCATGCCAAACTACCCAGCCAACCTTCTCTGTTG
65 ATAAGCATTCAAATTGGTACGAAATTAACTGTCATGCCAAACTACCCAACCAAACAGCCCTG-CC
* * * *
32856417 AA-A-TTGACTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGAA
129 AATATTTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATT-AAATTAGGACAAAATGGA
* * * * ** * * * *
32856480 CTGCCACGCCAAACTACCTAGCCAAACTGCCCGACCAATATTTTATTGAATGAAAAATTATGAGG
193 CTGTCATGCCAAACTACCCAGCCAAACTACCCTTCCAATATTTGATTGAATGCAAAATTAAGAAG
* ** * * * *
32856545 ACATTT-TAATAAACATTCATGTTGGAACGAAATGAACTGTCATGCCAAACTATCAAGCCAAACT
258 TCATTTCT-ATAAACATTCAAATTGGGACAAAATGGACTGTCATGCCAAAC--T---GTC---CT
* * * *
32856609 ACCCTACGAATATTTGATTGATTGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
314 -GCC-A--AA-A-TTGATTGAATGCAAAATTAA-AAGACATTTCTATAAGCATTCAAATTGGGAC
* * **
32856674 AAAAT-G-AACT-GTGC
372 GAAATGGAAAATCAAGC
* * * *
32856688 CAAACTA-C---CT----TG---T--CAAAATTTGATTGAATGTAAAATTAAAAGGACATTACTA
1 CAAACTACCTAGCTAAACTGCCCTACCAACATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* ** * * * * *
32856740 TAAACATTCAAATTGGTACGAAATGGACTGTCATGCCAATCTACCTAGCCAAACTGCCATGCC-A
66 TAAGCATTCAAATTGGTACGAAATTAACTGTCATGCCAAACTACCCAACCAAACAGCCCTGCCAA
* * * * *
32856804 TAATTGATTGAATACAAAATTATGAGAACATTTCTATAAGCATTAAATTTGGGACGAAATGGACT
131 TATTTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTAAA-TTAGGACAAAATGGACT
* * *
32856869 GTAATGCCAAACT-----GCC---CTA------CAAAATTTGATTGAATGCAAAATTAAGAGGAT
195 GTCATGCCAAACTACCCAGCCAAACTACCCTTCCAATATTTGATTGAATGCAAAATTAAGAAG-T
*** * * * ** * * **
32856920 -ATTTCTATAATTTTTTAAATTCGGACGAAATAAACTATCATGCCACACTACCCTGCCAAAATTG
259 CATTTCTATAAACATTCAAATTGGGACAAAATGGACTGTCATGCCAAACTGTCCTGCCAAAATTG
* * * * *
32856984 ATTGAATGCTAAATTAAGAGAACATTTCTATAAGCATTCAAATTGCGACGAAATAGACAATCAAG
324 ATTGAATGCAAAATTAAAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGGAAAATCAAG
32857049 C
388 C
* * * * * *
32857050 CAAACTACCCAG-TCAAACTGTCCTGCCAATATTTGATTGAATGCACAATTAAGAGGCCATTTCT
1 CAAACTACCTAGCT-AAACTGCCCTACCAACATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * * * *
32857114 ATAAACATTCAAATTAAG-ACGAAATGAAC-GTTCATGCCAAAATA-ACAAGCCAAACTA-TCTT
65 ATAAGCATTCAAATT-GGTACGAAATTAACTG-TCATGCCAAACTACCCAA-CCAAAC-AGCCCT
* * * * *
32857175 GTCAATAGTTGATTGAATGCAAAATTAAGAGGACATTTCT-TAAAGCGTTCAAATTTGGACAAAA
126 GCCAATATTTGATTGAATGCAAAATTAAGAGAACATTTCTAT-AAGCATT-AAATTAGGACAAAA
* * * * *
32857239 TGGACTGTTATGCCAAA-T----TG-C---CT----TGCCAAAATTTGATTGAATGTAAAATTAA
189 TGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTTCCAATATTTGATTGAATGCAAAATTAA
* * * * * * * *
32857291 GAGGACATTTCTATAGACATTCAAATTGGTACGAAATTGACTATAATGCCAAACTACCCAGCCAA
254 GAAGTCATTTCTATAAACATTCAAATTGGGACAAAATGGACTGTCATGCCAAACT-----G----
* * * * * * * *
32857356 ACTGCTCTACCAAAATTGATTGAATGCAGAATTAAGAAGACATTTTTATAAGTAATAAAATTAGC
310 --T-C-CTGCCAAAATTGATTGAATGCAAAATTAA-AAGACATTTCTATAAGCATTCAAATTGGG
* *** *
32857421 ACAAAATGGACTTTCATGC
370 ACGAAATGGAAAATCAAGC
* * * * * * * * * *
32857440 CAAACTACCAAACCAAACTTCACTGCCAAAATTTGATTAAATGCAAAATTAAGAAGACAATTCTA
1 CAAACTACCTAGCTAAACTGCCCTACCAACATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * ** ** * *** *
32857505 TAAGCGTTTAAATTGGGACGAAATGGACTGTCATGCCAAACTGTCTAACCAAACTTTCCTACCAA
66 TAAGCATTCAAATTGGTACGAAATTAACTGTCATGCCAAACTACCCAACCAAACAGCCCTGCCAA
* * * * * * *
32857570 AATTTGATTGAATTCGAACTTACA-ATG-ACATTTCTATAAACATTCAAATT-GAGACGAAATTG
131 TATTTGATTGAATGCAAAATTA-AGA-GAACATTTCTATAAGCATT-AAATTAG-GACAAAATGG
* * * * *
32857632 ACTGTCATGGCAAACTACCCAACCAAACTACCGTGCCAA-AATTGATTGAATGCAAAATTAAG-A
192 ACTGTCATGCCAAACTACCCAGCCAAACTACCCTTCCAATATTTGATTGAATGCAAAATTAAGAA
* * * * *
32857695 GAACATTTCTATAAGA-ATTCAAATTGGAACGAAATGAACAGTCATGCCAAACTACCCAGCCAAA
257 G-TCATTTCTATAA-ACATTCAAATTGGGACAAAATGGACTGTCATGCCAAACT-----G-----
* *
32857759 CTACCATGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGAATTCAAATTGGGA
310 -T-CC-TGCCAAAATTGATTGAATGCAAAATTAAAAG-ACATTTCTATAAGCATTCAAATTGGGA
*** *
32857824 CGAAATGGACGGTCATGC
371 CGAAATGGAAAATCAAGC
* * * * * * *
32857842 CAAACTACCCAACCAAACTGCCAT-GCTACAATTGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCTAGCTAAACTGCCCTACCAACATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * ** *
32857906 TAAGCATTCAAATTGGTACGAAATTGACTGTCATACTAAACTGCCCAGCCAAATTGCCCTACCAA
66 TAAGCATTCAAATTGGTACGAAATTAACTGTCATGCCAAACTACCCAACCAAACAGCCCTGCCAA
* * * ** **
32857971 -AATTGATT-AATGCAAATTTTAGAGGGCATTTCTATAAAAATTTAAA-TAGGGACAAAATGGAC
131 TATTTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCA-TTAAATTA-GGACAAAATGGAC
* * * ** * * *
32858033 TGACACGCCTAACTACTGAG-C---C-A-------AA-ATTTGATTGCATGCAAAATTAAGAGGA
194 TGTCATGCCAAACTACCCAGCCAAACTACCCTTCCAATATTTGATTGAATGCAAAATTAAGAAGT
* * * * *
32858085 CATTTCTATAATA-GTTCAAATTGGGACGAAGA-GGACAGTCATGCAAAAATTCCCAACCAAATT
259 CATTTCTATAA-ACATTCAAATTGGGAC-AAAATGGACTGTCATG---------CC-A--AACTG
* * *
32858148 TCCTTCCCAAAATTTGATT-AATTGC-AAATTAAAAATGACATTTCGATACA-CAATCAAATTGG
310 TCC-TGCCAAAA-TTGATTGAA-TGCAAAATT-AAAA-GACATTTCTATA-AGCATTCAAATTGG
* *** *
32858210 GATGAAATGGACTGTCATGC
369 GACGAAATGGAAAATCAAGC
* * * * * *
32858230 AAAACTACCCAGCCAAACTTCCCTGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCTAGCTAAACTGCCCTACCAACATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * ** *
32858294 TAAACATTCAAATTGGTACGAAATTAACAGTCATGCCAAACAACCCAACCAAATTGCCCTACCAA
66 TAAGCATTCAAATTGGTACGAAATTAACTGTCATGCCAAACTACCCAACCAAACAGCCCTGCCAA
* * * * **
32858359 TATTTGATTGTATGCAAAATTAAGAGGACATTTCTATAGGTATTCAAATTAGGACAAAATAAACT
131 TATTTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATT-AAATTAGGACAAAATGGACT
* * *
32858424 GTCATGCCAAACAACCCAGCCAAAC-AGCCCTTCCAATATTTGCTTGAATGAAAAATTAAGAAGT
195 GTCATGCCAAACTACCCAGCCAAACTA-CCCTTCCAATATTTGATTGAATGCAAAATTAAGAAGT
* * *
32858488 CATTTCTATAAGCATT-ATAATTGGGACGAAATGGACTGTCATGCCAAACTGTTCTGCCAAAATT
259 CATTTCTATAAACATTCA-AATTGGGACAAAATGGACTGTCATGCCAAACTGTCCTGCCAAAATT
* * *
32858552 AATTGAACGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGTACGAAATGGAAAATCAT
323 GATTGAATGCAAAATTAAAA-GACATTTCTATAAGCATTCAAATTGGGACGAAATGGAAAATCA-
32858617 A-C
386 AGC
* * * * * * *
32858619 CAAACTA-CTCAGCTAAATTGTCCTGCGAACATTTGATTTAATGTAAAATCAAGAGGACATTTCT
1 CAAACTACCT-AGCTAAACTGCCCTACCAACATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * *
32858683 ATAGGCATTCAAATTGGGACGAAA-TAGACTGTCATGCCAAACTACCTAGCCAAACAGCCCGGCC
65 ATAAGCATTCAAATTGGTACGAAATTA-ACTGTCATGCCAAACTACCCAACCAAACAGCCCTGCC
* * * * * *
32858747 AATGTTTGCTTGAATGCAAAATTAAGA-ACTCATTTCTATAAGCATTATACTTGGGACGAAATGG
129 AATATTTGATTGAATGCAAAATTAAGAGA-ACATTTCTATAAGCATTA-AATTAGGACAAAATGG
* *
32858811 ATTGTCATGCCAAACTACCCCGCCAAACTA-CCTTGCCAATATTTGATTGAATGCAAAATTAAGA
192 ACTGTCATGCCAAACTACCCAGCCAAACTACCCTT-CCAATATTTGATTGAATGCAAAATTAAGA
* * * * * *
32858875 AGACATTTCTATAAACATTCAAATTTGGACAAAATGAATTGTCGTGACAAACT-TCCATGCCAAA
256 AGTCATTTCTATAAACATTCAAATTGGGACAAAATGGACTGTCATGCCAAACTGTCC-TGCCAAA
* * **
32858939 ATTGATTGAATGCAAAATTAAAATGACATTTTTATAAGCATTAAAATTGGGACGAAATGGACTAT
320 ATTGATTGAATGCAAAATTAAAA-GACATTTCTATAAGCATTCAAATTGGGACGAAATGGAAAAT
32859004 CAAGC
384 CAAGC
* *
32859009 CAAACTACCTAGCTAAACTGCCCTACCAATATTTTATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCTAGCTAAACTGCCCTACCAACATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
32859074 TAAGCATTCAAATTGGGCTA--AAATGGAA-TGTCATGCCAAACTA-CCAATCCCAAACAACCTT
66 TAAGCATTCAAATT-GG-TACGAAAT-TAACTGTCATGCCAAACTACCCAA--CCAAACAGCCCT
* * *
32859135 GCTAGA-ATTTGATTGAATGCAAAATTAAGAGAATATTTCTATAAGCATTAAAATTAGAACAAAA
126 GCCA-ATATTTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATT-AAATTAGGACAAAA
* * * * * * *
32859199 TGGACTATCATGCCAAACTATCCAGCCATACTACTCTGCCAAAATTTGATTGAATTCAAAATTAA
189 TGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTTCCAATATTTGATTGAATGCAAAATTAA
* * *
32859264 GAGAAT-ATTTTTATAAACATTCAAATTGGGACAAAATGGACTATCATGCCAAACTGTCCTGCCA
254 GA-AGTCATTTCTATAAACATTCAAATTGGGACAAAATGGACTGTCATGCCAAACTGTCCTGCCA
* * * ** * *
32859328 TAATTTGATGGAATGCAAAATTAAGAAGAGATTTCTATAAGCATTCAAATTAAGACGAATTGGAC
318 -AAATTGATTGAATGCAAAATTAA-AAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAA
* *
32859393 TAT-AATGT
381 AATCAA-GC
** * *
32859401 TGAACGACC---C---A--G-CC-A--AA-ATTTGATTGAATGAAAAATTAAGAGGACATTTCTA
1 CAAACTACCTAGCTAAACTGCCCTACCAACATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * *
32859453 TAAGTATTCAAAATTGGGT-CAAAATGT-ACTATAATGTCAAACTACCCAATCAAACTGCCCTGC
66 TAAGCATTC-AAATT-GGTACGAAAT-TAACTGTCATGCCAAACTACCCAACCAAACAGCCCTGC
* * * * * * ** *
32859516 CAAAATTAGATTAAATGTAAAATTAAAAGAA-ATTTCTATAAGCATTAAAATTGGGATGAAATTG
128 CAATATTTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATT-AAATTAGGACAAAATGG
* * *
32859580 ACTATCATGCCAAACTACCCAGCAAAACTACCTAGCAAAACTTACTTGCCAAAATTTGATTGAAT
192 ACTGTCATGCCAAACTACCCAGC-CAA--A-CTA-C----C---CTT-CCAATATTTGATTGAAT
* * * * * *
32859645 GCAAAATTAAGAGGACATTTCTATAAACATTAAAAATGGGACGAAATGTACAGTCACAGGAAACT
244 GCAAAATTAAGAAGTCATTTCTATAAACATTCAAATTGGGACAAAATG----G--AC-TG----T
* * * * ** *
32859710 ACACAGCCAAA-TAG-CCATACCAAAATTGATGGAATTCAAAATT--AAGACATTTCTATGTGTA
298 -CA-TGCCAAACT-GTCC-TGCCAAAATTGATTGAATGCAAAATTAAAAGACATTTCTATAAGCA
* *
32859771 TTCAAATTGGGACGAAAT-G--CA-CATG-
359 TTCAAATTGGGACGAAATGGAAAATCAAGC
* * * * * * *
32859796 C--A-T--GTA---AAACTACCCTGCCAAAATTTGATTGAAAGAAAAATTAAGTA-GACATTTTT
1 CAAACTACCTAGCTAAACTGCCCTACCAACATTTGATTGAATGCAAAATTAAG-AGGACATTTCT
* * ** * * * *
32859852 ATAAGGATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCC-AGCAAATCTGTCCTACC
65 ATAAGCATTCAAATTGGTACGAAATTAACTGTCATGCCAAACTACCCAACCAAA-CAGCCCTGCC
* * * * * * *
32859916 AAAATTTGATTGGATTCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGTA
129 AATATTTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATT-AAATTAGGACAAAATGGA
*
32859981 CTATCATGCCAAACT
193 CTGTCATGCCAAACT
32859996 GCCCTATCGG
Statistics
Matches: 3872, Mismatches: 735, Indels: 595
0.74 0.14 0.11
Matches are distributed among these distances:
358 1 0.00
359 48 0.01
360 2 0.00
361 4 0.00
362 9 0.00
363 2 0.00
364 2 0.00
365 3 0.00
368 2 0.00
370 2 0.00
371 1 0.00
373 62 0.02
374 3 0.00
375 83 0.02
376 65 0.02
377 70 0.02
378 51 0.01
379 80 0.02
380 27 0.01
381 5 0.00
382 7 0.00
383 3 0.00
384 1 0.00
385 1 0.00
386 5 0.00
387 225 0.06
388 168 0.04
389 108 0.03
390 758 0.20
391 331 0.09
392 145 0.04
393 11 0.00
394 7 0.00
395 4 0.00
396 16 0.00
397 23 0.01
398 30 0.01
399 275 0.07
400 136 0.04
401 105 0.03
402 324 0.08
403 588 0.15
404 70 0.02
405 7 0.00
406 2 0.00
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (388 bp):
CAAACTACCTAGCTAAACTGCCCTACCAACATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
TAAGCATTCAAATTGGTACGAAATTAACTGTCATGCCAAACTACCCAACCAAACAGCCCTGCCAA
TATTTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTAAATTAGGACAAAATGGACTG
TCATGCCAAACTACCCAGCCAAACTACCCTTCCAATATTTGATTGAATGCAAAATTAAGAAGTCA
TTTCTATAAACATTCAAATTGGGACAAAATGGACTGTCATGCCAAACTGTCCTGCCAAAATTGAT
TGAATGCAAAATTAAAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAAAATCAAGC
Found at i:32858986 original size:87 final size:88
Alignment explanation
Indices: 32858834--32858997 Score: 233
Period size: 87 Copynumber: 1.9 Consensus size: 88
32858824 ACTACCCCGC
* * *
32858834 CAAACTACCTTGCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAAT
1 CAAACTACCATGCCAATAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTAAAAT
*
32858899 TTGGACAAAATGAATTGTCGTGA
66 TGGGACAAAATGAATTGTCGTGA
* * *
32858922 CAAACTTCCATGCCAA-AATTGATTGAATGCAAAATTAA-AATGACATTTTTATAAGCATTAAAA
1 CAAACTACCATGCCAATAATTGATTGAATGCAAAATTAAGAA-GACATTTCTATAAACATTAAAA
*
32858985 TTGGGACGAAATG
65 TTGGGACAAAATG
32858998 GACTATCAAG
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
86 2 0.03
87 51 0.76
88 14 0.21
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (88 bp):
CAAACTACCATGCCAATAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTAAAAT
TGGGACAAAATGAATTGTCGTGA
Found at i:32859013 original size:87 final size:88
Alignment explanation
Indices: 32858832--32859017 Score: 223
Period size: 87 Copynumber: 2.1 Consensus size: 88
32858822 AAACTACCCC
* * *
32858832 GCCAAACTACCTTGCCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAA
1 GCCAAACTACCATGCCAATAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTAAA
* * * **
32858897 ATTTGGACAAAATGAATTGTCGT
66 ATTGGGACAAAATGAACTATCAA
* * * *
32858920 GACAAACTTCCATGCCAA-AATTGATTGAATGCAAAATTAA-AATGACATTTTTATAAGCATTAA
1 GCCAAACTACCATGCCAATAATTGATTGAATGCAAAATTAAGAA-GACATTTCTATAAACATTAA
* *
32858983 AATTGGGACGAAATGGACTATCAA
65 AATTGGGACAAAATGAACTATCAA
32859007 GCCAAACTACC
1 GCCAAACTACC
32859018 TAGCTAAACT
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
86 2 0.02
87 64 0.79
88 15 0.19
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (88 bp):
GCCAAACTACCATGCCAATAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTAAA
ATTGGGACAAAATGAACTATCAA
Found at i:32859289 original size:203 final size:203
Alignment explanation
Indices: 32858940--32859318 Score: 523
Period size: 203 Copynumber: 1.9 Consensus size: 203
32858930 CATGCCAAAA
* * *
32858940 TTGATTGAATGCAAAATTAAAATGACATTTTTATAAGCATTAAAATTGGGACGAAATGGACTATC
1 TTGATTGAATGCAAAATTAAAATGACATTTTTATAAGCATTAAAATTAGAACAAAATGGACTATC
* * * * *
32859005 AAGCCAAACTACCTAGCTAAACTGCCCTACCAATATTTTATTGAATGCAAAATTAAGAGGACATT
66 AAGCCAAACTACCTAGCCAAACTACCCTACCAAAATTTGATTGAATGCAAAATTAAGAGAACATT
* *
32859070 TCTATAAGCATTCAAATTGGG-CTAAAATGGAATGTCATGCCAAACTACCAATCCCAAACAACCT
131 TCTATAAACATTCAAATTGGGAC-AAAATGGAATATCATGCCAAACTACCAATCCCAAACAACCT
32859134 TGCTAGAAT
195 TGCTAGAAT
*
32859143 TTGATTGAATGCAAAATTAAGA-GA-ATATTTCTATAAGCATTAAAATTAGAACAAAATGGACTA
1 TTGATTGAATGCAAAATTAAAATGACAT-TTT-TATAAGCATTAAAATTAGAACAAAATGGACTA
* * * * * *
32859206 TCATGCCAAACTATCC-AGCCATACTACTCTGCCAAAATTTGATTGAATTCAAAATTAAGAGAAT
64 TCAAGCCAAACTA-CCTAGCCAAACTACCCTACCAAAATTTGATTGAATGCAAAATTAAGAGAAC
* *
32859270 ATTTTTATAAACATTCAAATTGGGACAAAATGGACTATCATGCCAAACT
128 ATTTCTATAAACATTCAAATTGGGACAAAATGGAATATCATGCCAAACT
32859319 GTCCTGCCAT
Statistics
Matches: 153, Mismatches: 19, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
201 2 0.01
202 5 0.03
203 143 0.93
204 3 0.02
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.28
Consensus pattern (203 bp):
TTGATTGAATGCAAAATTAAAATGACATTTTTATAAGCATTAAAATTAGAACAAAATGGACTATC
AAGCCAAACTACCTAGCCAAACTACCCTACCAAAATTTGATTGAATGCAAAATTAAGAGAACATT
TCTATAAACATTCAAATTGGGACAAAATGGAATATCATGCCAAACTACCAATCCCAAACAACCTT
GCTAGAAT
Found at i:32859367 original size:88 final size:89
Alignment explanation
Indices: 32859234--32859499 Score: 288
Period size: 88 Copynumber: 3.0 Consensus size: 89
32859224 CCATACTACT
* * * *
32859234 CTGCCAAAATTTGATTGAATTCAAAATTAAG-AGAATATTTTTATAAACATTCAAATTGGGACAA
1 CTGCCAAAATTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACAA
* * *
32859298 AATGGACTATCATGCCAAACTG-TC
65 AATGGACTATAATGTCAAACTGACC
* * * ** *
32859322 CTGCCATAATTTGATGGAATGCAAAATTAAGAAGAGATTTCTATAAGCATTCAAATTAAGACGAA
1 CTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACAAA
* **
32859387 TTGGACTATAATGTTGAAC-GACC
66 ATGGACTATAATGTCAAACTGACC
* * * * *
32859410 CAGCCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGTATTCAAAATTGGGTCAA
1 CTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTC-AAATTGGGACAA
*
32859475 AATGTACTATAATGTCAAACT-ACC
65 AATGGACTATAATGTCAAACTGACC
32859499 C
1 C
32859500 AATCAAACTG
Statistics
Matches: 144, Mismatches: 30, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
87 1 0.01
88 113 0.78
89 30 0.21
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.29
Consensus pattern (89 bp):
CTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACAAA
ATGGACTATAATGTCAAACTGACC
Found at i:32859597 original size:100 final size:102
Alignment explanation
Indices: 32859412--32859600 Score: 258
Period size: 100 Copynumber: 1.9 Consensus size: 102
32859402 GAACGACCCA
* * * * *
32859412 GCCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGTATTCAAAATTGGGTCAAAA
1 GCCAAAATTAGATTAAATGAAAAATTAAGAAGAAATTTCTATAAGCATTCAAAATTGGGTCAAAA
*
32859477 TGTACTATAATGTCAAACTACCCAATCAAACTGCCCT
66 TGTACTATAATGCCAAACTACCCAATCAAACTGCCCT
* *
32859514 GCCAAAATTAGATTAAATGTAAAATTAA-AAGAAATTTCTATAAGCATT-AAAATTGGGATGAAA
1 GCCAAAATTAGATTAAATGAAAAATTAAGAAGAAATTTCTATAAGCATTCAAAATTGGG-TCAAA
* *
32859577 TTG-ACTATCATGCCAAACTACCCA
65 ATGTACTATAATGCCAAACTACCCA
32859601 GCAAAACTAC
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
100 28 0.37
101 23 0.30
102 25 0.33
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.28
Consensus pattern (102 bp):
GCCAAAATTAGATTAAATGAAAAATTAAGAAGAAATTTCTATAAGCATTCAAAATTGGGTCAAAA
TGTACTATAATGCCAAACTACCCAATCAAACTGCCCT
Found at i:32859607 original size:13 final size:13
Alignment explanation
Indices: 32859591--32859621 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
32859581 CTATCATGCC
32859591 AAACTACCCAGCA
1 AAACTACCCAGCA
*
32859604 AAACTACCTAGCA
1 AAACTACCCAGCA
32859617 AAACT
1 AAACT
32859622 TACTTGCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.32, G:0.06, T:0.13
Consensus pattern (13 bp):
AAACTACCCAGCA
Found at i:32860121 original size:137 final size:137
Alignment explanation
Indices: 32859873--32860132 Score: 373
Period size: 137 Copynumber: 1.9 Consensus size: 137
32859863 AATTGGGACG
* * * *
32859873 AAATGGACTGTCATGCCAAACTACCCAGCAAATCTGTCCTACCAAAATTTGATTGGATTCAAAAT
1 AAATGGACAGTCATGCCAAACTACCCAGCAAATCTGTCCTACCAAAATTGGATTGAATGCAAAAT
* * *
32859938 TAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGTACTATCATGCCAAACTGCCCTAT
66 TAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATCCCAAACTGCCCTAT
32860003 CGGGAGA
131 CGGGAGA
* * **
32860010 AAATGGACAGTCATGCCAAA-TGACCTAGCCAAA-CTG-CCATGCCAAAATTGGATTGAATGGGA
1 AAATGGACAGTCATGCCAAACT-ACCCAG-CAAATCTGTCC-TACCAAAATTGGATTGAATGCAA
32860072 AATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATCCCAAACT
63 AATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATCCCAAACT
32860133 ACCTAGTCAA
Statistics
Matches: 109, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
136 3 0.03
137 102 0.94
138 4 0.04
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.24
Consensus pattern (137 bp):
AAATGGACAGTCATGCCAAACTACCCAGCAAATCTGTCCTACCAAAATTGGATTGAATGCAAAAT
TAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATCCCAAACTGCCCTAT
CGGGAGA
Found at i:32860224 original size:46 final size:46
Alignment explanation
Indices: 32860153--32860254 Score: 123
Period size: 46 Copynumber: 2.2 Consensus size: 46
32860143 ACTACCCTTC
* * * * * *
32860153 TAAAATTTGATTGAATTCAAGATTAATAGTACATTTCTATAAGCAT
1 TAAAATTTGATTGAATGCAAAATTAAGAGAAAATTTCTATAAGAAT
* *
32860199 TAAAATTTTATTTAATGCAAAATTAAGAGAAAATTTCTATAAGAAT
1 TAAAATTTGATTGAATGCAAAATTAAGAGAAAATTTCTATAAGAAT
*
32860245 TCAAATTTGA
1 TAAAATTTGA
32860255 AAAAAAAATG
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (46 bp):
TAAAATTTGATTGAATGCAAAATTAAGAGAAAATTTCTATAAGAAT
Found at i:32861724 original size:27 final size:27
Alignment explanation
Indices: 32861694--32861871 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32861684 ATATTGAGTC
* * * *
32861694 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32861721 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32861748 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32861776 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32861803 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32861830 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32861857 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32861872 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32861833 original size:82 final size:81
Alignment explanation
Indices: 32861715--32861870 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32861705 TGCTATATAA
* *
32861715 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32861780 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32861797 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32861861 CACTTAGTGC
65 CACTTAGTGC
32861871 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32869914 original size:27 final size:27
Alignment explanation
Indices: 32869884--32870062 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
32869874 ATATTGAGCC
* * *
32869884 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
32869911 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
32869938 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
32869966 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
32869993 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
32870020 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAGTCA-ACT
32870047 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
32870063 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:32870023 original size:82 final size:81
Alignment explanation
Indices: 32869905--32870060 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
32869895 TGCTATATAA
* *
32869905 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
32869970 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
32869987 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
32870051 CACTTAGTGC
65 CACTTAGTGC
32870061 TATACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:32870629 original size:13 final size:13
Alignment explanation
Indices: 32870611--32870635 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32870601 TACTAAATTT
32870611 TCATGGATTCAAG
1 TCATGGATTCAAG
32870624 TCATGGATTCAA
1 TCATGGATTCAA
32870636 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:32871850 original size:100 final size:100
Alignment explanation
Indices: 32871634--32872279 Score: 637
Period size: 100 Copynumber: 6.4 Consensus size: 100
32871624 GGTTGTCACA
* * * * *
32871634 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
1 ATAAGCATTAAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCC-TACCA
*
32871699 AAATTTGATTAAATGCAAAATTAAGATG-ACATTTAT
65 AAATTTGATTAAATGCAAAATTAAGA-GAACATTTTT
* * * * * *
32871735 ATAAG-AATACAAATTGGGGCGAAATGGATTGTCATGCCAAACTACCCAACCAAATTGCCCAGCC
1 ATAAGCATTA-AAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCTA-CC
32871799 AAAA-TTGATTAAATGCAAAATTAAGAGAACATTTTT
64 AAAATTTGATTAAATGCAAAATTAAGAGAACATTTTT
* * * * *
32871835 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
1 ATAAGCATTAAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCC-TACCA
* *
32871900 AAATTTGATTGAATGCAAAATTAAGAGGAA-ATTTAT
65 AAATTTGATTAAATGCAAAATTAAGA-GAACATTTTT
* * * * * * * * **
32871936 ATAGGCATTCAAATTGGGACGAAATGAACTGTCATGCTAAGCTACCCAGCAAAACTATTCTACCA
1 ATAAGCATTAAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACT-GCCTACCA
**
32872001 AAATTT-ATTAAATGCAAAATTAAGAGTAA-ATTTCC
65 AAATTTGATTAAATGCAAAATTAAGAG-AACATTTTT
* * * * * *
32872036 ATAATCATTCAAATTGGGAGAAAATGGACTGTCGTGCCAAACTATCCAACCAAACTGTCTTACCA
1 ATAAGCATTAAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTG-CCTACCA
* ** *
32872101 AAATTTGATTGAATGCAAAATTTGGAGGACATTTCTT
65 AAATTTGATTAAATGCAAAATTAAGAGAACATTT-TT
* *** * * * *
32872138 -TAAGCATTTAAATTGGGATGGAATAGACTGTCATGCCAAACTACCCAACAAAATTGGCCT-GCA
1 ATAAGCATTAAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACT-GCCTACCA
* *
32872201 AAAATTGATTGAATGCAAAATTAAGA-AGACATTTTT
65 AAATTTGATTAAATGCAAAATTAAGAGA-ACATTTTT
*
32872237 ATAAGCATTCAAATTAGGG-CAAAATGGACTGTCATGCCAAACT
1 ATAAGCATTAAAATT-GGGACAAAATGGACTGTCATGCCAAACT
32872280 GTCTTATCAA
Statistics
Matches: 450, Mismatches: 78, Indels: 35
0.80 0.14 0.06
Matches are distributed among these distances:
99 4 0.01
100 230 0.51
101 211 0.47
102 5 0.01
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.26
Consensus pattern (100 bp):
ATAAGCATTAAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACCAAACTGCCTACCAA
AATTTGATTAAATGCAAAATTAAGAGAACATTTTT
Found at i:32871961 original size:101 final size:101
Alignment explanation
Indices: 32871634--32872440 Score: 794
Period size: 101 Copynumber: 8.1 Consensus size: 101
32871624 GGTTGTCACA
* * * * *
32871634 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTACCA
* * *
32871699 AAATTTGATTAAATGCAAAATTAAGATGACATTTAT
66 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * * * * *
32871735 ATAAGAATACAAATTGGGGCGAAATGGATTGTCATGCCAAACTACCCAACCAAATTGCC-CAGCC
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTA-CC
* * *
32871799 AAAA-TTGATTAAATGCAAAATTAAGAGAACATTTTT
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * *
32871835 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTACCA
* *
32871900 AAATTTGATTGAATGCAAAATTAAGAGGAAATTTAT
66 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * * *
32871936 ATAGGCATTCAAATTGGGACGAAATGAACTGTCATGCTAAGCTACCCAGCAAAACTA-TTCTACC
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCT-TACC
* * * *
32872000 AAAATTT-ATTAAATGCAAAATTAAGAGTAAATTTCC
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * **
32872036 ATAATCATTCAAATTGGGA-GAAAATGGACTGTCGTGCCAAACTATCCAACCAAACTGTCTTACC
1 ATAAGCATTCAAATTGGGACG-AAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTACC
**
32872100 AAAATTTGATTGAATGCAAAATTTGGAGGACATTTCT
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * * * * * * *
32872137 TTAAGCATTTAAATTGGGATGGAATAGACTGTCATGCCAAACTACCCAACAAAATTGGCC-T-GC
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT-ACCTTACC
* * *
32872200 AAAAATTGATTGAATGCAAAATTAAGAAGACATTTTT
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* *
32872237 ATAAGCATTCAAATTAGGG-CAAAATGGACTGTCATGCCAAACT-----G------T--CTTATC
1 ATAAGCATTCAAATT-GGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTACC
* *
32872288 AAAATTGGATTGAATGCAAAATTAAGAGGATATTTCT
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * *
32872325 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATCCCAAACTACCTAGTCAAACTACCCTT-CT
1 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTA-CCTTACC
* * *
32872389 AAAATTTGATTGAATTCAAGATTAAGAGTACATTTCT
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
32872426 ATAAGCATTCAAATT
1 ATAAGCATTCAAATT
32872441 TAATTGAATG
Statistics
Matches: 581, Mismatches: 98, Indels: 54
0.79 0.13 0.07
Matches are distributed among these distances:
86 1 0.00
87 4 0.01
88 70 0.12
89 1 0.00
93 1 0.00
99 2 0.00
100 233 0.40
101 263 0.45
102 6 0.01
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (101 bp):
ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCTTACCA
AAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
Found at i:32871983 original size:201 final size:201
Alignment explanation
Indices: 32871634--32875963 Score: 1170
Period size: 201 Copynumber: 21.7 Consensus size: 201
32871624 GGTTGTCACA
32871634 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
* * * * * * *
32871699 AAATTTGATTAAATGCAAAATTAAGATGACATTTATATAAGAATACAAATTGGGGCGAAATGGAT
66 AAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGAAC
*
32871764 TGTCATGCCAAACTACCCAACCAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAGAAC
131 TGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAGAAC
32871829 ATTTTT
196 ATTTTT
32871835 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
* *
32871900 AAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAGGCATTCAAATTGGGACGAAATGAAC
66 AAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGAAC
* * * * * *
32871965 TGTCATGCTAAGCTACCCAGCAAAACTAT-TCTA-CCAAAATTTATTAAATGCAAAATTAAGAGT
131 TGTCATGCCAAACTACCCAACAAAA-T-TGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAG-
**
32872028 AA-ATTTCC
193 AACATTTTT
** * * ** * * * **
32872036 ATAATCATTCAAATTGGGAGAAAATGGACTGTCGTGCCAAACTATCCAACCAAACTGTCTTACCA
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
** * * * * *
32872101 AAATTTGATTGAATGCAAAATTTGGAGGACATTTCTTTAAGCATTTAAATTGGGATGGAAT-AGA
66 AAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGA-A
* * * *
32872165 CTGTCATGCCAAACTACCCAACAAAATTGGCCTGCAAAAATTGATTGAATGCAAAATTAAGA-AG
130 CTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAGA-
32872229 ACATTTTT
194 ACATTTTT
* * ** *
32872237 ATAAGCATTCAAATTAGGG-CAAAATGGACTGT----C---A-T-----GCCAAACTGTCTTATC
1 ATAAGAATTAAAATT-GGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACC
* * * *
32872288 AAAATTGGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAATTGGGACGAAATGGA
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGAA
* * * * * ** * * * *
32872353 CTGTCATCCCAAACTACCTAGTC-AAACTACCCTTCTAAAATTTGATTGAATTCAAGATTAAGAG
130 CTGTCATGCCAAACTACCCA-ACAAAATTGCCCAGCCAAAA-TTGATTAAATGCAAAATTAAGAG
* *
32872417 TACATTTCT
193 AACATTTTT
* * ** *** * *** * * ** * * **
32872426 ATAAGCATTCAAATT-TAATTGAATGCAAAATTAAG-AGAAATTTCTA-TAAGAATTCAAATTTG
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCA-AAA---CTACCCAG---CCAAACTAC
*** ** * * * * ** * ** * * *
32872488 AAAAAAAAAATTGGACTGTCATGCAAAACTACCCTACCAAATTACCCTGCCAAAATTGATTGAAT
59 CTTACCAAAATTTGATTG-AATGCAAAA-T----TA--AGAGGA-CAT--TTATA-T-A-AGCAT
* * * * * ** * **** **
32872553 GCAAAATTAGGA-G-AAT--ATTTTTATAAGAATTAAAAT-TGGGACAAAATGGATGGTCA-CAC
110 TC-AAATTGGGACGAAATGAACTGTCAT--G--CCAAACTACCCAACAAAAT---TGCCCAGC-C
* *** * * **
32872612 AAAACT-ACCCAA-CCAAACCGCCTTACCA-AA-ATTTGATT
166 AAAATTGATTAAATGCAAA----ATTAAGAGAACATTT--TT
* * *** * * ** * * * *** * *
32872650 GAATGAAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATGAACTGTCATG
1 --ATAAGAA-TT-----AAAATTGGGACAA--AATGGACTGT-CACGCAAAACT--AC--CCA-G
* * *
32872715 CCAAACTACCCAACCAAATTGCCTTGCCAAAA-TTGATTGAATGCAAAATTAAGAGAACATTTTT
50 CCAAACT-----A-C-------CTTACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTAT
* * * * * ** * * * * * *
32872779 ATAAGAATTAAAATTGGGACAAAATGGATTGTCACACAAAACTACCCAGCCAAACTACCTTA-CC
102 ATAAGCATTCAAATTGGGACGAAATGAACTGTCATGCCAAACTACCCAACAAAATTGCC-CAGCC
* **
32872843 AAAATTTGATTGAATGCAAAATTAAGAGTAA-ATTTCC
166 AAAA-TTGATTAAATGCAAAATTAAGAG-AACATTTTT
** * * * ** * * *
32872880 ATAATCATTCAAATTGGGAGAAAATGGACTATCGTGCCAAACTACCCAGCAAAACTA-TTCTACC
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCT-TACC
* * ** * ** * *
32872944 AAAATTT-ATTGAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAAATTGGGAAAAAAAGGA
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGAA
* * * * * * *
32873008 CTGTCGTGCCAAACTATCCAACCAAACTGCCTTA-CCAAAATTTCATTGAATGCAAAATTTGAAG
130 CTGTCATGCCAAACTACCCAACAAAATTGCC-CAGCCAAAA-TTGATTAAATGCAAAA-TT-AAG
32873072 -G-ACATTTCTT
191 AGAACATTT-TT
* * *** * * * * * * * *
32873082 -TAAGCATTTAAATTGGGATGGAATAGACTATCATGCCAAACTACACAGCAAAATTGGCC-TACC
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACT-ACCTTACC
* * *
32873145 AAAA-TTGATTGAATGCAAAATTAAGAGGACATGTCTATAAGCATTCAAATTGGGGCGAAAT-AG
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGA-
* *
32873208 ACTGTCTTG-C---C-A---AAC-----TGCCCAGCCAAAATTTGATTGAATGCAAAATTAAGAG
129 ACTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAA-TTGATTAAATGCAAAATTAAGAG
* *
32873260 GACATTTCT
193 AACATTTTT
* * * * * *
32873269 ATAAGCATTCAAATTGGGGCGAAATGGACTGT----C---A-T-----GCCAAACTGCCTTGCCA
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
* * ** * * * * * *
32873321 AAATTGGATTGAATGCAAAATTAAGAGGACATTTCTATTGGCACTCCAATTGGGACAAAACGGAT
66 AAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGAAC
* * ** * * * *
32873386 TGTCATGCCAAACTACCCAACCAAACTGCCTTGCCCAAATTTTATTGAATGCAACAA-TAAGAGG
131 TGTCATGCCAAACTACCCAACAAAATTGCCCAG-CCAAAATTGATTAAATGCAA-AATTAAGAGA
*
32873450 ACATTTCT
194 ACATTTTT
* * ** * * * * * * * * *
32873458 ATAAGCATTCAAATTGGGATGAAATAGACGGTCACGCCAAACTACCCTGCCAAATTGCCATGCTA
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
* * * *
32873523 AAA-TTGATTGAATGCTAAATTAATAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
66 AAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGAAC
* * * * * * * * * * * *
32873587 TGTTATGCAAAACTACCCAGCCAAACTACCCTGGCAAAATTGATTGAACT-CCAAATTTAGAGGA
131 TGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATT-AAATGCAAAATTAAGAGAA
* *
32873651 CAATTCT
195 CATTTTT
* * * * ** * * * *
32873658 AAAAGCATTCAAATTAGGATGAAATGGATTGTCATGCCAAACTATCCAGCCAAATTACCTAGCTA
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCC-AA--A-CTA-C--
* * * * * * * **
32873723 AACTACCCAACCAAAATTTGATGGAATGAAAAAATAAGAGGGCAGTTAAATAAATATTCAAATTG
59 --CT----TACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTG
* * * * * * * *
32873788 GGACGAAAT-AGACAGTCATGCAAAAATACCCAGCCAAATTTCCCTGCCAAAATTTGATTGAATG
118 GGACGAAATGA-ACTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAA-TTGATTAAATG
* * **
32873852 CAAAACTAAGAGGACATTTCA
181 CAAAATTAAGAGAACATTTTT
* * * * * * * *
32873873 ATAA-ACA-TACAAATTGGAACGAAATGGACTGTCATGTAAAACTATCTAGCCAAAC-ATCCCTG
1 ATAAGA-ATTA-AAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTA-CCTTA
* * * * * *
32873935 CCAAAA-TTGACTAAATGCAAAATTAATAGGACATTTCTATAAGCATTCAAATTGGTACAAAAAT
63 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGAC-GAAAT
* * * * *
32873999 GGACTTTCATG-TAATACTACCCAGCAATATT----AG-----A---ATT-AATGCAAAATTAAG
127 GAACTGTCATGCCAA-ACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAG
* *
32874050 AGGACA-TTCT
191 AGAACATTTTT
* * * * * * * * *
32874060 ATAAGTAGTT-AAATTGAGACAAAATGGATTGTCAAGCAAAACTTCCAAGCAAAAC-AGCCCTGC
1 ATAAG-AATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTA-CCTTAC
* * * ** * * * *
32874123 CAATATTTGATTGAATGCAAAATTAAGAAGTCATTCCTATAACCATTGAAATTTGGACGAAATGG
64 CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGA
* ** * * * *
32874188 ACTGTCATGCTAAACTA-CC--C-----TG--C--CTTAATTTGAGTAAATGAAAAATTAATATG
129 ACTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGA-G
*
32874241 -ACATTTCT
193 AACATTTTT
* * * ** * ** * * * *
32874249 GTAAGAGTTCAAATAT-GGATGAAATGGACAGTCATTCCAAACTACCCAGCCAAATTTCC-CAGC
1 ATAAGAATTAAAAT-TGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTA-C
* ** * * * *
32874312 CAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCGATAAACATACAAATTGGAACGAAATGG
64 CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGA
* * * * * ** * * *
32874377 ACTATCATGCAAAACTATCTAGCTAACCTT-CTCCA-TCGAAATTGATTGAATGCAAAATTAAGA
129 ACTGTCATGCCAAACTACCCAAC-AAAATTGC-CCAGCCAAAATTGATTAAATGCAAAATTAAGA
** *
32874440 GAACGGTTCT
192 GAACATTTTT
* * * * * * *
32874450 ATAAGCATTTAAATTGGGACTAAATGAACTGTCATGC--AA-T----------ACTACCCTGCCA
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
* * ** *
32874502 AAA-TTGATTGAATGCTAAATTAAGAGAACATTT-TATAAGCATTCAAATTACGAGGAAAT-AGA
66 AAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGA-A
* * * * * * * * * *
32874564 CAGTCATGCCAAACTACCCAGCCAAACTGTCCTGCCAATATTTGATTGAATGCACAATTAAGAGG
130 CTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAA-AATTGATTAAATGCAAAATTAAGAGA
*
32874629 ACATTTCT
194 ACATTTTT
* * * * * * * *
32874637 ATAAAAATTCAAATTGCGACGAAATGGACTGTCATGCCAAAA-TAACAAGCCAAACTACCTTGCC
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACG-CAAAACTACCCAGCCAAACTACCTTACC
* * * * *
32874701 AATATTTGATTGAATGCAAAATTAAGAGGACATTTCT-TAAAGCATTCAAATTTGGACAAAATGG
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTATAT-AAGCATTCAAATTGGGACGAAATGA
* * * * *
32874765 ACTTTTATGCCAAACT-GCC--C-----T----A-CCAAAATTTGATTGAATGTAAAATTAAGAG
129 ACTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAA-TTGATTAAATGCAAAATTAAGAG
** *
32874817 GGCATTTCT
193 AACATTTTT
* * * * * * * *
32874826 AT-AGACATTCAAATTGGTACGAAATGGACTGTAATGCCAAACTACCCGGCCAAACT-GCTCTAC
1 ATAAGA-ATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCT-TAC
* * * * * * *
32874889 CAAAA-TTGATTGAATGTAAACTTAAGAGGACATTTTTATAAGTAATAAAATTGGGACGAAATGG
64 CAAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGA
* * * * ** *
32874953 ACTGTCAAGCCAAACTACCCAGCCAAACTT-CACTTCCAAAATTTGATTGAATGCAAAATTAAGA
129 ACTGTCATGCCAAACTACCCA-ACAAAATTGCCCAGCCAAAA-TTGATTAAATGCAAAATTAAGA
* *
32875017 GGACATTTCT
192 GAACATTTTT
* ** * ** * * * * * * * * *
32875027 ATAAGCATTTTATTTGGGATGAAATGGACTATCATGCCAAACTGCCTAACCCAACTTTCC-TGCC
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAAC-TACCTTACC
* * * * * * *
32875091 AAAATTTGATTGAATTCGAACTTACGAGGACATTTCTATAAACATTCAAATTGGGACGAAATTAA
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGAA
* * * * * * * * *
32875156 TTGTCATGGCAAACTATCCAACCAAACT-ACCATGCCAAAATTGATTGAATGCAAAATTAAAAGG
130 CTGTCATGCCAAACTACCCAACAAAATTGCCCA-GCCAAAATTGATTAAATGCAAAATTAAGAGA
*
32875220 ACATTTCT
194 ACATTTTT
* * * * * * * * * *
32875228 ACAAGAATTCAAATTGGGACAAAATGAACGGTCATGCCAAACTACCCAACCAAACT-GCTATGCT
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCT-TACC
* * * *
32875292 ACAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAATGGA
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGAA
* ** * * * *
32875356 CTG-CAATGCTAAACTACCCGGCCAAATTGCCCTA-CCAAAATCGATT-AATGCAAATTTTAGAG
130 CTGTC-ATGCCAAACTACCCAACAAAATTGCCC-AGCCAAAATTGATTAAATGCAAAATTAAGAG
* *
32875418 GACATTTCT
193 AACATTTTT
* * * * *
32875427 ATAAGCATTTAAATAGGGACAAAATGGAC--T---G--------CCC-GCCTAACTACC-GAGCC
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTA-CC
* * * *
32875477 AAAATTTGATTGCATGCAAAATTAAGATGACATTTCTATAA-TAGTTCAAATTGGGACGAAGA-G
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCA-TTCAAATTGGGACGAA-ATG
* * * * * * ** *
32875540 GACAGTCATGCAAAAATACCCAACCAAATTTCCTTGCCAAAATTTGATTAATTGC-AAATTAA-A
128 AACTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAA-TTGATTAAATGCAAAATTAAGA
* **
32875603 AATGACATTTCG
192 GA--ACATTTTT
* * * ** * * * *
32875615 ATACA-CATTCAAATTAGGATGAAATGGACTGTCATGCAAAACTACCCAGCCAAACTTCCCTGCC
1 ATA-AGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACC
* * * * *
32875679 AAAA-TTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGTACGAAATTAA
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGAA
* * * * * * **
32875743 CAGTCATACCAAACTACCCAGCTAAATTGCCCTGCCAATATTTGATTGTATGCAAAATTAAGAGG
130 CTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAA-AATTGATTAAATGCAAAATTAAGA-G
*
32875808 AA-ATTTCT
193 AACATTTTT
* ** * * * * *
32875816 ATAGGCGTTCAAATTAGGACAAAATGGACTGTCAGGCCAAACTACCCAGCCAAACAACCCTT-CC
1 ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTA-CCTTACC
* ** * * * * * *
32875880 AATATTTGATTGAATAAAAAATTAAGAAGTCATTTCTATAAGTATT-ATAATTGGGATGAAATGG
65 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCA-AATTGGGACGAAATGA
*
32875944 ACTCTCATGCCAAACTACCC
129 ACTGTCATGCCAAACTACCC
32875964 TGCCAAAATT
Statistics
Matches: 3105, Mismatches: 725, Indels: 597
0.70 0.16 0.13
Matches are distributed among these distances:
174 3 0.00
175 13 0.00
176 55 0.02
177 1 0.00
179 1 0.00
180 2 0.00
181 2 0.00
184 5 0.00
185 15 0.00
186 130 0.04
187 176 0.06
188 361 0.12
189 304 0.10
190 13 0.00
192 2 0.00
193 7 0.00
194 3 0.00
195 1 0.00
196 2 0.00
197 5 0.00
198 3 0.00
199 56 0.02
200 176 0.06
201 1101 0.35
202 261 0.08
203 8 0.00
204 2 0.00
205 1 0.00
206 18 0.01
207 8 0.00
208 1 0.00
209 2 0.00
210 2 0.00
211 1 0.00
212 3 0.00
213 5 0.00
214 96 0.03
215 63 0.02
217 8 0.00
218 1 0.00
219 9 0.00
220 16 0.01
221 15 0.00
222 14 0.00
223 7 0.00
224 5 0.00
226 4 0.00
227 4 0.00
228 4 0.00
230 4 0.00
231 6 0.00
232 14 0.00
233 18 0.01
234 12 0.00
235 10 0.00
236 11 0.00
237 7 0.00
238 2 0.00
239 3 0.00
240 3 0.00
242 2 0.00
246 1 0.00
247 8 0.00
248 5 0.00
249 4 0.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.26
Consensus pattern (201 bp):
ATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
AAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATTCAAATTGGGACGAAATGAAC
TGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAGAAC
ATTTTT
Found at i:32872305 original size:88 final size:87
Alignment explanation
Indices: 32872201--32872367 Score: 264
Period size: 88 Copynumber: 1.9 Consensus size: 87
32872191 TTGGCCTGCA
*
32872201 AAAATTGATTGAATGCAAAATTAAGAAGACATTTTTATAAGCATTCAAATTAGGG-CAAAATGGA
1 AAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATT-GGGACAAAATGGA
*
32872265 CTGTCATGCCAAACTGTCTTATC
65 CTGTCATCCCAAACTGTCTTATC
* * *
32872288 AAAATTGGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAATTGGGACGAAATGGA
1 AAAATT-GATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACAAAATGGA
32872353 CTGTCATCCCAAACT
65 CTGTCATCCCAAACT
32872368 ACCTAGTCAA
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
87 9 0.12
88 64 0.88
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (87 bp):
AAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACAAAATGGAC
TGTCATCCCAAACTGTCTTATC
Found at i:32872484 original size:45 final size:46
Alignment explanation
Indices: 32872390--32872486 Score: 142
Period size: 46 Copynumber: 2.1 Consensus size: 46
32872380 TACCCTTCTA
* * * * *
32872390 AAATTTGATTGAATTCAAGATTAAGAGTACATTTCTATAAGCATTC
1 AAATTTAATTGAATGCAAAATTAAGAGTAAATTTCTATAAGAATTC
32872436 AAATTTAATTGAATGCAAAATTAAGAG-AAATTTCTATAAGAATTC
1 AAATTTAATTGAATGCAAAATTAAGAGTAAATTTCTATAAGAATTC
32872481 AAATTT
1 AAATTT
32872487 GAAAAAAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
45 22 0.48
46 24 0.52
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.36
Consensus pattern (46 bp):
AAATTTAATTGAATGCAAAATTAAGAGTAAATTTCTATAAGAATTC
Found at i:32872668 original size:101 final size:100
Alignment explanation
Indices: 32872436--32873234 Score: 678
Period size: 100 Copynumber: 7.9 Consensus size: 100
32872426 ATAAGCATTC
* * **
32872436 AAATTTAATTGAATGCAAAATTAAGAGAAATTTCTATAAGAATTCAAATTTGAAAAAAAAAATTG
1 AAATTTGATTGAATGCAAAATTAAGAGAAATTTCTATAAGAATT-AAAATTG--GGAAAAAA-TG
* * * * *
32872501 GACTGTCATGCAAAACTACCCTACCAAATTACCCTGCCA
62 GACTGTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* * *
32872540 AAA-TTGATTGAATGCAAAATTAGGAGAATATTTTTATAAGAATTAAAATTGGGACAAAATGGA-
1 AAATTTGATTGAATGCAAAATTAAGAGAA-ATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
** *
32872603 TGGTCACACAAAACTACCCAACCAAACCGCCTTACCA
65 T-GTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* * * **
32872640 AAATTTGATTGAATGAAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTGAAAAAAAAAATG
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGAATT-AAAATTG--GGAAAAAATG
* * * *
32872705 AACTGTCATGCCAAACTACCCAACCAAATTGCCTTGCCA
62 GACTGTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* * *
32872744 AAA-TTGATTGAATGCAAAATTAAGAGAACATTTTTATAAGAATTAAAATTGGGACAAAATGGAT
1 AAATTTGATTGAATGCAAAATTAAGAGAA-ATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
** * *
32872808 TGTCACACAAAACTACCCAGCCAAACTACCTTACCA
65 TGTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* ** * *
32872844 AAATTTGATTGAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAAATTGGGAGAAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
* * * * * **
32872909 TATCGTGCCAAACTACCCAGCAAAACT-ATTCTACCA
65 TGTCATGCAAAACTACCCAACCAAACTGCCT-TACCA
* ** * *
32872945 AAATTT-ATTGAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAAATTGGGAAAAAAAGGAC
1 AAATTTGATTGAATGCAAAATTAAGAG-AAATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
* * *
32873009 TGTCGTGCCAAACTATCCAACCAAACTGCCTTACCA
65 TGTCATGCAAAACTACCCAACCAAACTGCCTTACCA
* * * * * *** *
32873045 AAATTTCATTGAATGCAAAATTTGAAG-GACATTTCTTTAAGCATTTAAATTGGGATGGAATAGA
1 AAATTTGATTGAATGCAAAA-TT-AAGAGAAATTTCTATAAGAATTAAAATTGGGAAAAAATGGA
* * * * * *
32873109 CTATCATGCCAAACTACACAGCAAAATTGGCC-TACCA
64 CTGTCATGCAAAACTACCCAACCAAACT-GCCTTACCA
* * * * *** *
32873146 AAA-TTGATTGAATGCAAAATTAAGAGGACATGTCTATAAGCATTCAAATTGGGGCGAAATAGAC
1 AAATTTGATTGAATGCAAAATTAAGA-GAAATTTCTATAAGAATTAAAATTGGGAAAAAATGGAC
* * * *
32873210 TGTCTTGCCAAACTGCCCAGCCAAA
65 TGTCATGCAAAACTACCCAACCAAA
32873235 ATTTGATTGA
Statistics
Matches: 578, Mismatches: 98, Indels: 42
0.81 0.14 0.06
Matches are distributed among these distances:
98 3 0.01
99 3 0.01
100 232 0.40
101 191 0.33
102 24 0.04
103 67 0.12
104 57 0.10
105 1 0.00
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (100 bp):
AAATTTGATTGAATGCAAAATTAAGAGAAATTTCTATAAGAATTAAAATTGGGAAAAAATGGACT
GTCATGCAAAACTACCCAACCAAACTGCCTTACCA
Found at i:32873299 original size:88 final size:88
Alignment explanation
Indices: 32873143--32873410 Score: 385
Period size: 88 Copynumber: 3.1 Consensus size: 88
32873133 AATTGGCCTA
* *
32873143 CCAAAA-TTGATTGAATGCAAAATTAAGAGGACATGTCTATAAGCATTCAAATTGGGGCGAAATA
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATG
*
32873207 GACTGTCTTGCCAAACTGCCCAG
66 GACTGTCATGCCAAACTGCCCAG
32873230 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATG
**
32873295 GACTGTCATGCCAAACTGCCTTG
66 GACTGTCATGCCAAACTGCCCAG
* ** * * * * *
32873318 CCAAAATTGGATTGAATGCAAAATTAAGAGGACATTTCTATTGGCACTCCAATTGGGACAAAACG
1 CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATG
* * *
32873383 GATTGTCATGCCAAACTACCCAA
66 GACTGTCATGCCAAACTGCCCAG
32873406 CCAAA
1 CCAAA
32873411 CTGCCTTGCC
Statistics
Matches: 162, Mismatches: 18, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
87 6 0.04
88 156 0.96
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (88 bp):
CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATG
GACTGTCATGCCAAACTGCCCAG
Found at i:32873451 original size:189 final size:191
Alignment explanation
Indices: 32873217--32877363 Score: 1019
Period size: 201 Copynumber: 21.5 Consensus size: 191
32873207 GACTGTCTTG
* *
32873217 CCAAACTGCCCAGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAAA
**
32873282 TTGGGGCGAAATGGACTGTCATGCCAAACTGCC-TTG-C-C-AAAATTGGATTGAATGCAAAATT
65 TTGGGATGAAATGGACTGTCATGCCAAACTGCCATTGCCACTAAAATT-GATTGAATGCAAAATT
** * * *
32873343 AAGAGGACATTTCTATTGGCACTCCAATTGGGACAAAACGGATTGTCATGCCAAACTACCCAA
129 AAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCATGCAAAACTACCCAA
* *
32873406 CCAAACTGCCTTGCCCAAATTTTATTGAATGCAACAATAAGAGGACATTTCTATAAGCATTCAAA
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAA-AATAAGAGGACATTTCTATAAGCATTCAAA
* * *
32873471 TTGGGATGAAATAGACGGTCACGCCAAACTACCCTGCCAAATTGCCATGCTAAAATTGATTGAAT
65 TTGGGATGAAATGGACTGTCATGCC-AA--A--CTGCC--ATTGCCA--CTAAAATTGATTGAAT
* * * * * *
32873536 GCTAAATTAATAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTTATGCAAAACT
121 GCAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCATGCAAAACT
*
32873601 ACCCAG
186 ACCCAA
* * * * * * * *
32873607 CCAAACTACCCTG-GCAAAATTGATTGAACTCCAAATTTAGAGGACAATTCTAAAAGCATTCAAA
1 CCAAACTGCCCTGCCCAAATTTGATTGAA-TGCAAAATAAGAGGACATTTCTATAAGCATTCAAA
* * *
32873671 TTAGGATGAAATGGATTGTCATGCCAAACTATCCAGCCAAATTACCTAGCTAAACTACCCAACCA
65 TTGGGATGAAATGGACTGTCATGCCAAAC--T---GCC--A-T---T-G---------CC-ACTA
* * * * * ** ** * * **
32873736 AAATTTGATGGAATGAAAAAATAAGAGGGCAGTTAAATAAATATTCAAATTGGGACGAAATAGAC
108 AAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGAC
* * *
32873801 AGTCATGCAAAAATACCCAG
172 TGTCATGCAAAACTACCCAA
* * * * * *
32873821 CCAAATTTCCCTGCCAAAATTTGATTGAATGCAAAACTAAGAGGACATTTCAATAAACATACAAA
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAAA
* * ** * * * * * *
32873886 TTGGAACGAAATGGACTGTCATGTAAAACTATCTAGCCAAACATCCCTGCCAAAATTGACTAAAT
65 TTGGGATGAAATGGACTGTCATG-CCAA--A-CT-GCC--A-TTGCC-ACTAAAATTGATTGAAT
* * * * * * *
32873951 GCAAAATTAATAGGACATTTCTATAAGCATTCAAATTGGTACAAAAATGGACTTTCATGTAATAC
121 GCAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGAC-AAAACGGACTGTCATGCAAAAC
32874016 TACCC-A
185 TACCCAA
* * *
32874022 GC-AA------T------ATTAGAATT-AATGCAAAATTAAGAGGACA-TTCTATAAGTAGTT-A
1 CCAAACTGCCCTGCCCAAATTTG-ATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCA-TTCA
* ** * * * * * *
32874071 AATTGAGACAAAATGGATTGTCAAGCAAAACTTCCA-AGCAAAACAGCCCTGCCAATATTTGATT
63 AATTGGGATGAAATGGACTGTCATGCCAAACTGCCATTGC----CA---CT---AA-AATTGATT
* * * * * * * * * *
32874135 GAATGCAAAATTAAGAAGTCATTCCTATAACCATTGAAATTTGGACGAAATGGACTGTCATGCTA
117 GAATGCAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCATGCAA
32874200 AACT-----A
182 AACTACCCAA
* * * * * * *
32874205 CC---CTG-CCT----TAATTTGAGTAAATGAAAAATTAATATGACATTTCTGTAAG-AGTTCAA
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCA-TTCAA
* * * * *
32874261 ATAT-GGATGAAATGGACAGTCATTCCAAACTACCCAGCCAAATTTCCCAGCCAAAATTTTATTG
64 AT-TGGGATGAAATGGACTGTCATGCCAAACT-----GCC--A-TTGCCA-CTAAAA-TTGATTG
* * * * * *
32874325 AATGCAAAATTAAGAGGACATTTCGATAAACA-TACAAATTGGAACGAAATGGACTATCATGCAA
118 AATGCAAAATTAAGAGGACATTTCTATAAGCACT-CAAATTGGGACAAAACGGACTGTCATGCAA
* * *
32874389 AACTATCTAG
182 AACTACCCAA
* * * * * ** *
32874399 CTAACCTTCTCCAT--CGAAA-TTGATTGAATGCAAAATTAAGAGAACGGTTCTATAAGCATTTA
1 CCAAACTGC-CC-TGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCA
* * * *
32874461 AATTGGGACT-AAATGAACTGTCATG-CAATACTACC-CTG-C-C-AAAATTGATTGAATGCTAA
63 AATTGGGA-TGAAATGGACTGTCATGCCAA-ACTGCCATTGCCACTAAAATTGATTGAATGCAAA
* * ** ** ** * *
32874520 ATTAAGAGAACATTT-TATAAGCATTCAAATTACGAGGAAATAGACAGTCATGCCAAACTACCCA
126 ATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCATGCAAAACTACCCA
*
32874584 G
191 A
* * **
32874585 CCAAACTGTCCTG-CCAATATTTGATTGAATGCACAATTAAGAGGACATTTCTATAAAAATTCAA
1 CCAAACTGCCCTGCCCAA-ATTTGATTGAATGCA-AAATAAGAGGACATTTCTATAAGCATTCAA
* * * ** *
32874649 ATTGCGACGAAATGGACTGTCATGCCAAAATAACA-AGCCAAACTACCTTGCCAATATTTGATTG
64 ATTGGGATGAAATGGACTGTCATGCCAAACTGCCATTGCC--ACTA-------AA-A-TTGATTG
* * *
32874713 AATGCAAAATTAAGAGGACATTTCT-TAAAGCATTCAAATTTGGACAAAATGGACT-T--T----
118 AATGCAAAATTAAGAGGACATTTCTAT-AAGCACTCAAATTGGGACAAAACGGACTGTCATGCAA
**
32874770 ---TA---TG
182 AACTACCCAA
* * * *
32874774 CCAAACTGCCCTACCAAAATTTGATTGAATGTAAAATTAAGAGGGCATTTCTAT-AGACATTCAA
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAG-CATTCAA
* * * * *
32874838 ATTGGTACGAAATGGACTGTAATGCCAAACTACCCGGCCAAACTGCTCTACCAAAATTGATTGAA
64 ATTGGGATGAAATGGACTGTCATGCCAAACT-----GCC--ATTGC-C-ACTAAAATTGATTGAA
* * * * * * * * * *
32874903 TGTAAACTTAAGAGGACATTTTTATAAGTAATAAAATTGGGACGAAATGGACTGTCAAGCCAAAC
120 TGCAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCATGCAAAAC
*
32874968 TACCCAG
185 TACCCAA
* * * * ** *
32874975 CCAAACTTCACTTCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTTTAT
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAAA
* * * *
32875040 TTGGGATGAAATGGACTATCATGCCAAACTGCCTAACCCAACTTTCCTGCCAAAATTTGATTGAA
65 TTGGGATGAAATGGACTGTCATGCCAAACTG------CC-A-TTGCC-ACTAAAA-TTGATTGAA
* * * * * * * *** *
32875105 TTCGAACTTACGAGGACATTTCTATAAACATTCAAATTGGGACGAAATTAATTGTCATGGC-AAA
120 TGCAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCAT-GCAAAA
*
32875169 CTATCCAA
184 CTACCCAA
* * * * * *
32875177 CCAAACTACCATG-CCAAAATTGATTGAATGCAAAATTAAAAGGACATTTCTACAAGAATTCAAA
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAAA
** * * * * * *
32875241 TTGGGACAAAATGAACGGTCATGCCAAACTACCCAACCAAACTGCTATGCTACAATTGATTGAAT
65 TTGGGATGAAATGGACTGTCATGCCAAACT-----GCC--ATTGCCA--CTAAAATTGATTGAAT
* * * * *
32875306 GCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAATGGACTG-CAATGCTAAAC
121 GCAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTC-ATGCAAAAC
**
32875370 TACCCGG
185 TACCCAA
* * * * * * *
32875377 CCAAATTGCCCT-ACCAAAATCGATT-AATGCAAATTTTAGAGGACATTTCTATAAGCATTTAAA
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAA-ATAAGAGGACATTTCTATAAGCATTCAAA
* ** ** * * * *
32875440 TAGGGACAAAATGGACTG-CCCGCCTAACTACCGA--GCCA--AAATTTGATTGCATGCAAAATT
65 TTGGGATGAAATGGACTGTCATGCCAAACTGCC-ATTGCCACTAAAATTGATTGAATGCAAAATT
* * * * * *
32875500 AAGATGACATTTCTATAA-TAGTTCAAATTGGGACGAAGA-GGACAGTCATGCAAAAATACCCAA
129 AAGAGGACATTTCTATAAGCA-CTCAAATTGGGAC-AAAACGGACTGTCATGCAAAACTACCCAA
* * * * * * * *
32875563 CCAAATTTCCTTGCCAAAATTTGATT-AATTGCAAATTAAAAATGACATTTCGATACA-CATTCA
1 CCAAACTGCCCTGCCCAAATTTGATTGAA-TGCAAAAT-AAGAGGACATTTCTATA-AGCATTCA
* * * * *
32875626 AATTAGGATGAAATGGACTGTCATGCAAAACTACCCAGCCAAACTTCCCTGCCAAAATTGATTGA
63 AATTGGGATGAAATGGACTGTCATGCCAAACT-----GCC--A-TTGCC-ACTAAAATTGATTGA
* * * * * *** * * *
32875691 ATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGTACGAAATTAACAGTCATACCAAA
119 ATGCAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCATGCAAAA
*
32875756 CTACCCAG
184 CTACCCAA
* * * * * *
32875764 CTAAATTGCCCTG-CCAATATTTGATTGTATGCAAAATTAAGAGGAAATTTCTATAGGCGTTCAA
1 CCAAACTGCCCTGCCCAA-ATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAA
* ** * * *
32875828 ATTAGGACAAAATGGACTGTCAGGCCAAACTACCCA--GCCAAACAACCCTTCCAATATTTGATT
64 ATTGGGATGAAATGGACTGTCATGCCAAACT-GCCATTG-C---C-A--C-T--AA-AATTGATT
** * * * * ** *
32875891 GAATAAAAAATTAAGAAGTCATTTCTATAAGTA-TTATAATTGGGATGAAATGGAC--TC-T-C-
117 GAATGCAAAATTAAGAGGACATTTCTATAAGCACTCA-AATTGGGACAAAACGGACTGTCATGCA
*
32875950 --A-T-----G
181 AAACTACCCAA
* * * * ** ** ** *
32875953 CCAAACTACCCTG-CCAAAATTGATTGAACGCAAATTTAAGAGGACGAACTGAACT-CTCATACC
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAA-ATAAGAGGAC-ATTTCTA-TAAGCAT-TC
**** * * * * * * *
32876016 AAACTACCCA-GCCAA---ACTGCCCTGCCAATATTTG--ATTG-AATGTAAAATT-A-AG-A-G
62 AAA-TTGGGATG-AAATGGACTGTCATGCCAA-A-CTGCCATTGCCA-CTAAAATTGATTGAATG
* * * * * * *
32876070 GATATTTCTATAGG-CA-TTC-----------AAATTGGGA-AGAAATGGACTGTCATGCCAAAC
122 CAAAATT-AAGAGGACATTTCTATAAGCACTCAAATTGGGACA-AAACGGACTGTCATGCAAAAC
*** *
32876121 TATTGAG
185 TACCCAA
* * * * **
32876128 CCAAACAGCCCTG-CCAATGTTTGATTAAATGCAAAATTAAGAAGTTATTTCTATAAGCATT-AT
1 CCAAACTGCCCTGCCCAA-ATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCA-
* * * * * *
32876191 ACTTGGGACGAAATAGACTGTCATGCCAAACTACCCA--GCCA--ATATTTGATTGAATGCAAAA
63 AATTGGGATGAAATGGACTGTCATGCCAAACT-GCCATTGCCACTAAAATTGATTGAATGCAAAA
* * ** * * * * * *
32876252 TTAAAAGGACCTTTCTATAAATATTCTAATTTGTACAAAATGGATTGTCATG-----------AA
127 TTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCATGCAAAACTACCCAA
** * * * * * *
32876306 --AAACTTTCATG-CCAAAATTGATTGAATGAAAAATTAAAATGG-CATTTTTATAAGCATTAAA
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGA-GGACATTTCTATAAGCATTCAA
* ** * * *
32876367 ATTGGGACGAAATTTACTGTCAAGCCAAACTCCCA-AGCCAAACTACCCTACCAATATTTGATTG
64 ATTGGGATGAAATGGACTGTCATGCCAAACTGCCATTG-C---C-A--CTA--AA-A-TTGATTG
* * ** * *
32876431 AATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAA
118 AATGCAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCATGCAAA
*
32876496 ACTACCCAG
183 ACTACCCAA
** *** *
32876505 CCAAACAACCCTGCCGGTATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAA
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAAA
* ** * * *
32876570 TTGAGACAAAATGGACTGTCATGCCAAGCTACCCAGCCATACTGCCTTGCCAAAATTTGATTGAA
65 TTGGGATGAAATGGACTGTCATGCCAA---A--CTGCCAT--TGCC--ACTAAAA-TTGATTGAA
* * * * * * *
32876635 TTCAAAATTAAGAGAATATTTTTATAAACAATCAAATTGGGAC-AAATGGACTGT--T-----A-
120 TGCAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCATGCAAAAC
*
32876691 T-----G
185 TACCCAA
* * * * * *
32876693 CCAAACTGCCCTTCCAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATTCAAA
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAA-AATAAGAGGACATTTCTATAAGCATTCAAA
* * * *** * * *
32876758 TTAGGACGAAATGGACTATCATGTTGAACTACCCA--GGCA--AAATTTGATTGAATGCAAAATT
65 TTGGGATGAAATGGACTGTCATGCCAAACT-GCCATTGCCACTAAAATTGATTGAATGCAAAATT
* * * * * * * * *
32876819 AAGAGGACATTTTTATAAGTATTCAAATTGGGTCGAAATGTACTGTAATGTC-AAACTACCCAG
129 AAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCATG-CAAAACTACCCAA
* * * * * * *
32876882 TCAAACTGCCCTGCCAAAATTAGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAAA
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAAA
* * *
32876947 TTGGGATGAAATTGACTGTCATGCCAAACTACC-TAGCAAAACTGACTTGCCAAAATTTGATTGA
65 TTGGGATGAAATGGACTGTCATGCCAAACTGCCATTGC----C--AC-T---AAAA-TTGATTGA
* * * * * * ** *
32877011 ATGCAAAATTAAGAGGACATTTCTATAAACATTAAAATTGGGACGAAATGTACTGTCATGGGAAC
119 ATGCAAAATTAAGAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCATGCAAAA
*
32877076 CTACCCAG
184 CTACCCAA
** * * * * * * ***
32877084 CCAAACAACCAT-ACCAAAATTGATGGAATGCAAATTTA-A-GACATTTCTATATTTATTCAAAT
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATAAGAGGACATTTCTATAAGCATTCAAAT
* * * * * *
32877146 TGGGACGAAATTGACT-TGCATGTCAAACAGCC-CTGCCA--AAATTTGATTGAATGCAAAATTA
66 TGGGATGAAATGGACTGT-CATGCCAAACTGCCATTGCCACTAAAATTGATTGAATGCAAAATTA
* * ** * * *
32877207 AGTA-GACATTTCTATAAGGATTCAAATTGGGATGAAATGGACTGTTATGCCAAACTACCCAA
130 AG-AGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCATGCAAAACTACCCAA
* * * * *
32877269 CCAATCTGTCCTGCCAAAATTTGATTGGATTCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
1 CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAAA
* * *
32877334 TTAGGACGAAATGTACTGTCATGCCAAACT
65 TTGGGATGAAATGGACTGTCATGCCAAACT
32877364 ACGCAGCCAA
Statistics
Matches: 2946, Mismatches: 673, Indels: 678
0.69 0.16 0.16
Matches are distributed among these distances:
162 16 0.01
163 1 0.00
164 2 0.00
165 1 0.00
166 1 0.00
169 1 0.00
170 1 0.00
173 12 0.00
174 15 0.01
175 136 0.05
176 64 0.02
177 8 0.00
178 9 0.00
179 3 0.00
180 4 0.00
181 1 0.00
182 3 0.00
183 7 0.00
184 8 0.00
185 83 0.03
186 142 0.05
187 157 0.05
188 365 0.12
189 427 0.14
190 21 0.01
191 6 0.00
192 8 0.00
193 6 0.00
194 17 0.01
195 5 0.00
196 6 0.00
197 16 0.01
198 63 0.02
199 60 0.02
200 169 0.06
201 551 0.19
202 378 0.13
203 4 0.00
204 1 0.00
205 4 0.00
206 1 0.00
207 5 0.00
209 1 0.00
210 1 0.00
212 1 0.00
213 5 0.00
214 84 0.03
215 61 0.02
216 2 0.00
217 1 0.00
218 1 0.00
219 1 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (191 bp):
CCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATAAGAGGACATTTCTATAAGCATTCAAAT
TGGGATGAAATGGACTGTCATGCCAAACTGCCATTGCCACTAAAATTGATTGAATGCAAAATTAA
GAGGACATTTCTATAAGCACTCAAATTGGGACAAAACGGACTGTCATGCAAAACTACCCAA
Found at i:32873497 original size:101 final size:100
Alignment explanation
Indices: 32873304--32874503 Score: 587
Period size: 100 Copynumber: 12.1 Consensus size: 100
32873294 GGACTGTCAT
* * * ** * *
32873304 GCCAAACTGCCTTGCCAAAATTGGATTGAATGCAAAATTAAGAGGACATTTCTATTGGCACTCCA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAA
* * * *
32873369 ATTGGGACAAAACGGATTGTCATGCCAAACTACCCA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * *
32873405 ACCAAACTGCCTTGCCCAAATTTTATTGAATGCAACAATAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAATGCAA-AATAAGAGGACATTTCTATAAGCATTCAA
* * * * * *
32873470 ATTGGGATGAAATAGACGGTCACGCCAAACTACCCT
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * *
32873506 GCCAAATTGCCATG-CTAAAATTGATTGAATGCTAAATTAATAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAATGC-AAAATAAGAGGACATTTCTATAAGCATTCAA
*
32873570 ATTGGGACGAAATGGACTGTTATGCAAAACTACCCA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * * * *
32873606 GCCAAACTACCCTG-GCAAAATTGATTGAACTCCAAATTTAGAGGACAATTCTAAAAGCATTCAA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAA-TGCAAAATAAGAGGACATTTCTATAAGCATTCAA
* * * * *
32873670 ATTAGGATGAAATGGATTGTCATGCCAAACTATCCA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * ***** * * ** * ***
32873706 GCCAAATTACCTAGCTAAACTACCCAACCAAAATTTG-ATGGAATGAA-AAAATAAGAGGGC-AG
1 GCC-AA--A-CT-GC---CCTGCCCAAATTTGA-TTGAATGCAA--AATAAGAGGACATTTCTA-
** * * *
32873768 TTAAATAAATATTCAAATTGGGACGAAATAGACAGTCATGCAAAAATACCCA
54 -TAAGC----ATTCAAATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * *
32873820 GCCAAATTTCCCTGCCAAAATTTGATTGAATGCAAAACTAAGAGGACATTTCAATAAACATACAA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAA
* * * *
32873885 ATTGGAACGAAATGGACTGTCATGTAAAACTATCTA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * *
32873921 GCCAAACAT-CCCTG-CCAAAATTGACTAAATGCAAAATTAATAGGACATTTCTATAAGCATTCA
1 GCCAAAC-TGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCA
* * * * *
32873984 AATTGGTACAAAAATGGACTTTCATGTAATACTACCCA
64 AATTGGGAC-GAAATGGACTGTCATGCAAAACTACCCA
* *
32874022 G-C-AA------T------ATTAGAATT-AATGCAAAATTAAGAGGACA-TTCTATAAGTAGTT-
1 GCCAAACTGCCCTGCCCAAATTTG-ATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCA-TTC
* * * * * *
32874070 AAATTGAGACAAAATGGATTGTCAAGCAAAACTTCCAA
63 AAATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * * *
32874108 GCAAAACAGCCCTG-CCAATATTTGATTGAATGCAAAATTAAGAAGTCATTCCTATAACCATTGA
1 GCCAAACTGCCCTGCCCAA-ATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCA
* *
32874172 AATTTGGACGAAATGGACTGTCATGCTAAACT----A
64 AATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * * *
32874205 -CC---CTG-CCT----TAATTTGAGTAAATGAAAAATTAATATGACATTTCTGTAAG-AGTTCA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCA-TTCA
* * * *
32874260 AATAT-GGATGAAATGGACAGTCATTCCAAACTACCCA
64 AAT-TGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * * * *
32874297 GCCAAATTTCCCAGCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCGATAAACATACAA
1 GCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAA
* * * *
32874362 ATTGGAACGAAATGGACTATCATGCAAAACTATCTA
65 ATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
* * * * * ** *
32874398 GCTAACCTTCTCCAT--CGAAA-TTGATTGAATGCAAAATTAAGAGAACGGTTCTATAAGCATTT
1 GCCAAACTGC-CC-TGCCCAAATTTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTC
* * * *
32874460 AAATTGGGACTAAATGAACTGTCATGCAATACTACCCT
63 AAATTGGGACGAAATGGACTGTCATGCAAAACTACCCA
32874498 GCCAAA
1 GCCAAA
32874504 ATTGATTGAA
Statistics
Matches: 824, Mismatches: 210, Indels: 131
0.71 0.18 0.11
Matches are distributed among these distances:
86 22 0.03
87 19 0.02
88 85 0.10
89 4 0.00
92 4 0.00
93 5 0.01
94 1 0.00
96 2 0.00
97 3 0.00
99 5 0.01
100 297 0.36
101 275 0.33
102 6 0.01
103 1 0.00
104 4 0.00
105 8 0.01
106 18 0.02
107 1 0.00
108 6 0.01
109 11 0.01
110 7 0.01
111 1 0.00
113 2 0.00
114 37 0.04
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (100 bp):
GCCAAACTGCCCTGCCCAAATTTGATTGAATGCAAAATAAGAGGACATTTCTATAAGCATTCAAA
TTGGGACGAAATGGACTGTCATGCAAAACTACCCA
Found at i:32874581 original size:86 final size:87
Alignment explanation
Indices: 32874415--32874589 Score: 221
Period size: 86 Copynumber: 2.0 Consensus size: 87
32874405 TTCTCCATCG
* * ** * *
32874415 AAATTGATTGAATGCAAAATTAAGAGAACGGTTCTATAAGCATTTAAATTGGGACTAAATGAACT
1 AAATTGATTGAATGCAAAATTAAGAGAACGATTCTATAAGCATTCAAATTACGACGAAATGAACA
*
32874480 GTCATGCAATACTACCCTGCCA
66 GTCATGCAATACTACCCAGCCA
* * *
32874502 AAATTGATTGAATGCTAAATTAAGAGAAC-ATTTTATAAGCATTCAAATTACGAGGAAAT-AGAC
1 AAATTGATTGAATGCAAAATTAAGAGAACGATTCTATAAGCATTCAAATTACGACGAAATGA-AC
32874565 AGTCATGCCAA-ACTACCCAGCCA
65 AGTCATG-CAATACTACCCAGCCA
32874588 AA
1 AA
32874590 CTGTCCTGCC
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
85 1 0.01
86 44 0.58
87 31 0.41
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.26
Consensus pattern (87 bp):
AAATTGATTGAATGCAAAATTAAGAGAACGATTCTATAAGCATTCAAATTACGACGAAATGAACA
GTCATGCAATACTACCCAGCCA
Found at i:32874688 original size:101 final size:100
Alignment explanation
Indices: 32874495--32878462 Score: 1591
Period size: 101 Copynumber: 39.8 Consensus size: 100
32874485 GCAATACTAC
* * * ** *
32874495 CCTGCCAAAATTGATTGAATGCTAAATTAAGAGAACATTT-TATAAGCATTCAAATTACGAGGAA
1 CCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
* *
32874559 ATAGACAGTCATGCCAAACTACCCAGCCAAACTGT
66 ATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* ** *
32874594 CCTGCCAATATTTGATTGAATGCACAATTAAGAGGACATTTCTATAAAAATTCAAATTGCGACGA
1 CCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
* * * *
32874659 AATGGACTGTCATGCCAAAATAACAAGCCAAACT-A
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
*
32874694 CCTTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCT-TAAAGCATTCAAATTTGGAC
1 CC-TGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AAGCATTCAAATTGGGAC
* * *
32874758 AAAATGGACTTTTATGCCAAACT-----GCC---C--T
63 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * *
32874786 AC--CAAAATTTGATTGAATGTAAAATTAAGAGGGCATTTCTAT-AGACATTCAAATTGGTACGA
1 CCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAG-CATTCAAATTGGGACGA
* *
32874848 AATGGACTGTAATGCCAAACTACCCGGCCAAACTG-
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * * * * *
32874883 CTCTACCAAAATTGATTGAATGTAAACTTAAGAGGACATTTTTATAAGTAATAAAATTGGGACGA
1 C-CTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
*
32874948 AATGGACTGTCAAGCCAAACTACCCAGCCAAACT-T
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* ** * *
32874983 CACTTCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTTTATTTGGGATG
1 C-CTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* * * * * *
32875048 AAATGGACTATCATGCCAAACTGCCTAACCCAACTTT
64 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * *
32875085 CCTGCCAAAATTTGATTGAATTCGAACTTACGAGGACATTTCTATAAACATTCAAATTGGGACGA
1 CCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
** * * * * *
32875150 AATTAATTGTCATGGCAAACTATCCAACCAAACT-A
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * *
32875185 CCATGCCAAAATTGATTGAATGCAAAATTAAAAGGACATTTCTACAAGAATTCAAATTGGGACAA
1 CC-TGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
* * *
32875250 AATGAACGGTCATGCCAAACTACCCAACCAAACTG-
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * *
32875285 CTATGCTACAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACG
1 C-CTGCCA-AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* * * *
32875349 AAATGGACTG-CAATGCTAAACTACCCGGCCAAATTGC
64 AAATGGACTGTC-ATGCCAAACTACCCAGCCAAACTGT
* * * * * * * *
32875386 CCTACCAAAATCGATT-AATGCAAATTTTAGAGGACATTTCTATAAGCATTTAAATAGGGACAAA
1 CCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
** *
32875450 ATGGACTG-CCCGCCTAACTA-CC-G----A--G-
66 ATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * *
32875475 -C--CAAAATTTGATTGCATGCAAAATTAAGATGACATTTCTATAA-TAGTTCAAATTGGGACGA
1 CCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGA
* * * * *
32875536 AGA-GGACAGTCATGCAAAAATACCCAACCAAA-TTT
65 A-ATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * *
32875571 CCTTGCCAAAATTTGATT-AATTGC-AAATTAAAAATGACATTTCGATACA-CATTCAAATTAGG
1 CC-TGCC-AAATTTGATTGAA-TGCAAAATT-AAGAGGACATTTCTATA-AGCATTCAAATTGGG
* *
32875633 ATGAAATGGACTGTCATGCAAAACTACCCAGCCAAACT-T
61 ACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * *
32875672 CCCTGCCAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGTACGA
1 -CCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
** * * * * *
32875737 AATTAACAGTCATACCAAACTACCCAGCTAAATTGC
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * * *
32875773 CCTGCCAATATTTGATTGTATGCAAAATTAAGAGGAAATTTCTATAGGCGTTCAAATTAGGACAA
1 CCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
* ***
32875838 AATGGACTGTCAGGCCAAACTACCCAGCCAAACAAC
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* ** * * * *
32875874 CCTTCCAATATTTGATTGAATAAAAAATTAAGAAGTCATTTCTATAAGTATT-ATAATTGGGATG
1 CCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA-AATTGGGACG
* * *
32875938 AAATGGACTCTCATGCCAAACTACCCTGCCAAAATTGAT
64 AAATGGACTGTCATGCCAAACTACCCAGCC-AAACTG-T
* * * * * **** ** * ** ** *
32875977 --TGAACGCAAATTT-A-AG-AGGACGAACTGAA-CTCTCATACCAAACTACCCAGCCAAACTGC
1 CCTG--C-CAAATTTGATTGAATG-CAAAATTAAGAGGACATTTC-TA-TAAGCATTCAAATTG-
* * * * * ** * ** * * *
32876036 CCTG-CCAATATTTGATTG-AATGTAAAATTA-AGAG-GATA-TTT
59 --GGACGAA-A-TGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * *** * * * * * * *
32876077 CTATAGGCATTCAAATTGGGA-AGAAATGGACTGTCATGCCA-AACTATTGAGCCAAACAGCCCT
1 C-CT--GC---CAAATT-TGATTG-AATGCAAAATTAAG--AGGAC-ATT--TCTATA-AG-CAT
* * ** ** * *** * * **
32876140 GCCAATGTTTGATTAAATGCAAAATTAAG--AAGTTATTTCTA-TAAG-CATTATACT-T
51 TCAAAT-TGGGACGAAATGGACTGTCATGCCAA---A---CTACCCAGCCA--A-ACTGT
** * * * * * * ** * * * *
32876195 -GGGACGAAA-TAGACTGTCATGCCAAACTACCCA-GCCAATATT-TGAT-TGAATGCAAAATT-
1 CCTG-CCAAATTTGATTG-AATGCAAAATTA-AGAGGAC-AT-TTCT-ATAAGCATTC-AAATTG
* * **** * * *
32876254 --A--AAA-GGACCTTTCTAT--AAATATTCTAATTTGTACAAAATGG
59 GGACGAAATGGA-CTGTC-ATGCCAA-A--CTACCCAG-CCAAACTGT
** * ** ** * * *
32876295 ATTGTCATGAA--AAACTTTCATGCCAAAATTGATTGAATGAAAAATTAAAATGGCATTTTTATA
1 CCTGCCA--AATTTGA-TTGAATG-CAAAATT-A-AG-A-G-GACATT----T--C-----TATA
* ** * **
32876358 AGCATTAAAATTGGGACGAAATTTACTGTCAAGCCAAACT-CCCAAGCCAAACTAC
46 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCC-AGCCAAACTGT
* * *
32876413 CCTACCAATATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGATGA
1 CCTGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
***
32876478 AATGGACTGTCATGCCAAACTACCCAGCCAAACAAC
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
** * * *
32876514 CCTGCCGGTATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAATTGAGACAA
1 CCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
* *
32876579 AATGGACTGTCATGCCAAGCTACCCAGCCATACTG-
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * * *
32876614 CCTTGCCAAAATTTGATTGAATTCAAAATTAAGAGAATATTTTTATAAACAATCAAATTGGGAC-
1 CC-TGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
*
32876678 AAATGGACTGTTATGCCAAACT-----GCC---CT-T
64 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * * *
32876706 -C--CAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATTCAAATTAGGACGAA
1 CCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
* ***
32876768 ATGGACTATCATGTTGAACTA--C--CC--A--G-
66 ATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * *
32876794 ---GCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGTATTCAAATTGGGTCGAA
1 CCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
* * * * *
32876856 ATGTACTGTAATGTCAAACTACCCAGTCAAACTGC
66 ATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * * *
32876891 CCTGCCAAAATTAGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAAATTGGGATGA
1 CCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
* * * *
32876956 AATTGACTGTCATGCCAAACTACCTAGCAAAACTGA
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * *
32876992 CTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTAAAATTGGGACGA
1 CCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
* ** * **
32877057 AATGTACTGTCATGGGAACCTACCCAGCCAAAC-AA
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * ***
32877092 CCATACCAAAATTGATGGAATGC-AAATTTA-A-GACATTTCTATATTTATTCAAATTGGGACGA
1 CC-TGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
* *
32877154 AATTGACT-TGCATGTC-AA--A--CAGCC---CTG-
65 AATGGACTGT-CATGCCAAACTACCCAGCCAAACTGT
* * *
32877181 -C--CAAAATTTGATTGAATGCAAAATTAAGTA-GACATTTCTATAAGGATTCAAATTGGGATGA
1 CCTGCCAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCAAATTGGGACGA
* * *
32877242 AATGGACTGTTATGCCAAACTACCCAACCAATCTGT
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * *
32877278 CCTGCCAAAATTTGATTGGATTCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGA
1 CCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
* * * *
32877343 AATGTACTGTCATGCCAAACTACGCAGCCAAATTGC
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
** * * ** * ** * *
32877379 CCTATCGGGAGAAAATGGACAGTCATGTC-AAATTACCA--A-A---CCA-AACTGCCTTGCCAA
1 CC--T---GCCAAATTTGATTG-AATG-CAAAATTAAGAGGACATTTCTATAA--GCATT--C-A
* * * * ** * ** **
32877436 AATTGGATTGAATGCAAAATTAAGA-GGACATTTC-TA-TAAGCATTCAAA-T-T
54 AATTGG---G-A--CGAAA-T-GGACTGTCATGCCAAACTACCCAGCCAAACTGT
** * * * * * * * **
32877486 -GAGACGAAA-TTGACTGTCATGCCAAACTACCCAGA-TAAACTGCCCTTCTA-AA--ATT-TGA
1 CCTG-CCAAATTTGATTG-AATGCAAAATTA---AGAGGACA-T----TTCTATAAGCATTCAAA
* * ** ** ** **
32877544 TT-GAACTCAAAATTAAAAGT-A-G--ATTTCTA-TAAG-C--A-T-T
56 TTGGGA--CGAAATGGACTGTCATGCCA-AACTACCCAGCCAAACTGT
* * * *** **
32877581 --T---AAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTAAAAAAA
1 CCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
* *
32877641 ATGGACTGTCATGCTAAACTACCCAGCCAAAAT-T
66 ATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * *
32877675 CCCTTCCAAAATTGGATTGAATGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGACG
1 -CCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* * *
32877740 AAATGGACTGTCTTGCCAAACTACCTAGCCAAACTGC
64 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
** * * ** * *
32877777 CCTATCAAAATTGATTGAATGCAAAGTTAAGAAAACATTTCTATAAGCATTAAAATTGGGATGAA
1 CCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
* * * * * *
32877842 ATAGACTGTCATGCCAAACTACCAAACTAAATTGC
66 ATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * ** * *
32877877 CCTGCCAAAATTGATTGAATGCAAAATTATGAGAACATTTTTATAAAAATTAAAATTGGGACAAA
1 CCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
* ** * *
32877942 ATGGACTGTTACACTAAACTACCCAACCAAACTG-
66 ATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * *
32877976 CCTTTCCAAAATTTGATTGAATGCAAAATTGAGAGGACATTTATATAAGCATACAAATTGGGACA
1 CC-TGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* *
32878041 AAATGGACTGTCATGCCAAACTACCCAGCAAAACTAT
64 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * * *
32878078 TCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAAACTTCCATAAGCATTCAAATTGAGA-GAA
1 CCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG-A
* * *
32878142 AATGGACTGTCATGCCAAACTATCCAACCAAACTGC
65 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * * * * * *
32878178 CCTACCAAAATTTGATTGAATGCAAAATTTAGAGGACACTGCTTTAAGCATTTAAATTGGGA-TA
1 CCTGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
* * * * *
32878242 GAATAGACTATCATGCCAAACTACCCAGCAAAATTGG
65 -AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* *
32878279 CCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAA
1 CCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
* * *
32878344 ATTGACTGTCATGCCAAACGACCCAGCCAAACTGC
66 ATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
* * *
32878379 CCAGACAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTTGGACGA
1 CCTG-CCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
* *
32878444 AATGGACTGTTATACCAAA
65 AATGGACTGTCATGCCAAA
32878463 TTGCCCTAGC
Statistics
Matches: 2914, Mismatches: 687, Indels: 534
0.70 0.17 0.13
Matches are distributed among these distances:
83 5 0.00
84 2 0.00
85 15 0.01
86 27 0.01
87 98 0.03
88 207 0.07
89 15 0.01
90 17 0.01
91 8 0.00
92 10 0.00
93 9 0.00
94 5 0.00
95 6 0.00
96 11 0.00
97 42 0.01
98 12 0.00
99 84 0.03
100 758 0.26
101 1311 0.45
102 41 0.01
103 13 0.00
104 15 0.01
105 27 0.01
106 25 0.01
107 9 0.00
108 5 0.00
109 15 0.01
110 16 0.01
111 21 0.01
112 12 0.00
113 6 0.00
114 7 0.00
115 7 0.00
116 9 0.00
117 11 0.00
118 15 0.01
119 6 0.00
120 1 0.00
121 8 0.00
122 3 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (100 bp):
CCTGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAA
ATGGACTGTCATGCCAAACTACCCAGCCAAACTGT
Found at i:32874879 original size:88 final size:88
Alignment explanation
Indices: 32874685--32874879 Score: 259
Period size: 88 Copynumber: 2.2 Consensus size: 88
32874675 AAAATAACAA
* *
32874685 GCCAAACTACCTTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCATTCAA
1 GCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCATTCAA
* *
32874750 ATTTGGACAAAATGGACTTTTAT
66 ATTTGGACAAAATGGACTGTAAT
* * * * *
32874773 GCCAAACTGCCCTACCAAAATTTGATTGAATGTAAAATTAAGAGGGCATTTC-TATAGACATTCA
1 GCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAG-CATTCA
*
32874837 AA-TTGGTACGAAATGGACTGTAAT
65 AATTTGG-ACAAAATGGACTGTAAT
*
32874861 GCCAAACTACCCGGCCAAA
1 GCCAAACTACCCTGCCAAA
32874880 CTGCTCTACC
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
87 8 0.09
88 84 0.91
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (88 bp):
GCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCATTCAA
ATTTGGACAAAATGGACTGTAAT
Found at i:32874908 original size:100 final size:99
Alignment explanation
Indices: 32874773--32875457 Score: 658
Period size: 100 Copynumber: 6.8 Consensus size: 99
32874763 GGACTTTTAT
* * *
32874773 GCCAAACTGCCCTACCAAAATTTGATTGAATGTAAAATTAAGAGGGCATTTCTATAGACATTCAA
1 GCCAAACTGCTCTACCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATA-ACATTCAA
* *
32874838 ATTGGTACGAAATGGACTGTAATGCCAAACTACCCG
64 ATTGGGACGAAATGGACTGTAATGCCAAACTACCCA
* * * * * *
32874874 GCCAAACTGCTCTACCAAAATTGATTGAATGTAAACTTAAGAGGACATTTTTATAAGTAATAAAA
1 GCCAAACTGCTCTACCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-CATTCAAA
32874939 TTGGGACGAAATGGACTGTCAA-GCCAAACTACCCA
65 TTGGGACGAAATGGACTGT-AATGCCAAACTACCCA
* * * **
32874974 GCCAAACTTCACTTCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTTTA
1 GCCAAACTGCTCTACCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-CATTCAA
* * * * * *
32875039 TTTGGGATGAAATGGACTATCATGCCAAACTGCCTA
64 ATTGGGACGAAATGGACTGTAATGCCAAACTACCCA
* * * * * * * *
32875075 ACCCAACT-TTCCTGCCAAAATTTGATTGAATTCGAACTTACGAGGACATTTCTATAAACATTCA
1 GCCAAACTGCT-CTACCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AACATTCA
** * * * *
32875139 AATTGGGACGAAATTAATTGTCATGGCAAACTATCCA
63 AATTGGGACGAAATGGACTGTAATGCCAAACTACCCA
* * * * * *
32875176 ACCAAACTAC-CATGCCAAAATTGATTGAATGCAAAATTAAAAGGACATTTCTACAAGAATTCAA
1 GCCAAACTGCTC-TACCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-CATTCAA
* * * *
32875240 ATTGGGACAAAATGAACGGTCATGCCAAACTACCCA
64 ATTGGGACGAAATGGACTGTAATGCCAAACTACCCA
* * * * *
32875276 ACCAAACTGCTATGCTACAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
1 GCCAAACTGCTCTACCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-CATTCAAA
* * * *
32875341 TTGGTACGAAATGGACTGCAATGCTAAACTACCCG
65 TTGGGACGAAATGGACTGTAATGCCAAACTACCCA
* * * * * *
32875376 GCCAAATTGCCCTACCAAAATCGATT-AATGCAAATTTTAGAGGACATTTCTATAAGCATTTAAA
1 GCCAAACTGCTCTACCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-CATTCAAA
* *
32875440 TAGGGACAAAATGGACTG
65 TTGGGACGAAATGGACTG
32875458 CCCGCCTAAC
Statistics
Matches: 484, Mismatches: 90, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
99 53 0.11
100 252 0.52
101 177 0.37
102 2 0.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.26
Consensus pattern (99 bp):
GCCAAACTGCTCTACCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAACATTCAAAT
TGGGACGAAATGGACTGTAATGCCAAACTACCCA
Found at i:32876407 original size:87 final size:86
Alignment explanation
Indices: 32876148--32876408 Score: 245
Period size: 87 Copynumber: 3.0 Consensus size: 86
32876138 CTGCCAATGT
* ** *
32876148 TTGATTAAATGCAAAATTAAGAAGTTATTTCTATAAGCATTATACTTGGGACGAAATAGACTGTC
1 TTGATTGAATGCAAAATTAA-AAGGCATTTCTATAAGCATTATAATTGGGACGAAATAGACTGTC
*
32876213 ATGCCAAACTACCC-AGCCAATAT
65 ATGCCAAACT-CCCAAGCCAA-AA
* ** * * * * * *
32876236 TTGATTGAATGCAAAATTAAAAGGACCTTTCTATAAATATTCTAATTTGTACAAAATGGATTGTC
1 TTGATTGAATGCAAAATTAAAAGG-CATTTCTATAAGCATTATAATTGGGACGAAATAGACTGTC
** ** *
32876301 ATGAAAAACTTTCATGCCAAAA
65 ATGCCAAACTCCCAAGCCAAAA
* * * **
32876323 TTGATTGAATGAAAAATTAAAATGGCATTTTTATAAGCATTAAAATTGGGACGAAATTTACTGTC
1 TTGATTGAATGCAAAATTAAAA-GGCATTTCTATAAGCATTATAATTGGGACGAAATAGACTGTC
*
32876388 AAGCCAAACTCCCAAGCCAAA
65 ATGCCAAACTCCCAAGCCAAA
32876409 CTACCCTACC
Statistics
Matches: 132, Mismatches: 38, Indels: 7
0.75 0.21 0.04
Matches are distributed among these distances:
87 69 0.52
88 63 0.48
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (86 bp):
TTGATTGAATGCAAAATTAAAAGGCATTTCTATAAGCATTATAATTGGGACGAAATAGACTGTCA
TGCCAAACTCCCAAGCCAAAA
Found at i:32876757 original size:87 final size:88
Alignment explanation
Indices: 32876605--32876875 Score: 278
Period size: 88 Copynumber: 3.1 Consensus size: 88
32876595 AAGCTACCCA
* * * * *
32876605 GCCATACTG-CCTTGCCAAAATTTGATTGAATTCAAAATTAAGAGAAT-ATTTTTATAAACAATC
1 GCCAAACTGCCCTT-CCAAAATTTGATTGAATGCAAAATTAAGA-AGTCATTTTTATAAGCATTC
*
32876668 AAATTGGGAC-AAATGGACTGTTAT
64 AAATTGGGACGAAATGGACTGTAAT
* * *
32876692 GCCAAACTGCCCTTCCAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTTCCAAAATTTGATTGAATGCAAAATTAAGAAGTCATTTTTATAAGCATTCAA
* * *
32876757 ATTAGGACGAAATGGACTATCAT
66 ATTGGGACGAAATGGACTGTAAT
*** * *** * * *
32876780 GTTGAACTACCCAGGCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGTATTCAA
1 GCCAAACTGCCCTTCCAAAATTTGATTGAATGCAAAATTAAGAAGTCATTTTTATAAGCATTCAA
* *
32876845 ATTGGGTCGAAATGTACTGTAAT
66 ATTGGGACGAAATGGACTGTAAT
*
32876868 GTCAAACT
1 GCCAAACT
32876876 ACCCAGTCAA
Statistics
Matches: 150, Mismatches: 31, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
86 2 0.01
87 56 0.37
88 92 0.61
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (88 bp):
GCCAAACTGCCCTTCCAAAATTTGATTGAATGCAAAATTAAGAAGTCATTTTTATAAGCATTCAA
ATTGGGACGAAATGGACTGTAAT
Found at i:32877261 original size:88 final size:84
Alignment explanation
Indices: 32877083--32877249 Score: 199
Period size: 88 Copynumber: 1.9 Consensus size: 84
32877073 AACCTACCCA
* ***
32877083 GCCAAACAACCATACCAAAATTGATGGAATGCAAATTTAAGACATTTCTATATTTATTCAAATTG
1 GCCAAACAACCATACCAAAATTGATGGAATGCAAATTAAAGACATTTCTATAAGGATTCAAATTG
*
32877148 GGACGAAATTGACTTGCAT
66 GGACGAAATGGACTTGCAT
* * * * *
32877167 GTCAAACAGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGTAGACATTTCTATAAGGATTCAA
1 GCCAAACAACCATACCAAAA-TTGATGGAATGC-AAATTAA--AGACATTTCTATAAGGATTCAA
*
32877232 ATTGGGATGAAATGGACT
62 ATTGGGACGAAATGGACT
32877250 GTTATGCCAA
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
84 16 0.24
85 11 0.16
86 6 0.09
88 35 0.51
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.29
Consensus pattern (84 bp):
GCCAAACAACCATACCAAAATTGATGGAATGCAAATTAAAGACATTTCTATAAGGATTCAAATTG
GGACGAAATGGACTTGCAT
Found at i:32877512 original size:150 final size:150
Alignment explanation
Indices: 32877241--32877515 Score: 421
Period size: 150 Copynumber: 1.8 Consensus size: 150
32877231 AATTGGGATG
* * * * * * *
32877241 AAATGGACTGTTATGCCAAACTACCCAACCAATCTGTCCTGCCAAAATTTGATTGGATTCAAAAT
1 AAATGGACAGTCATGCCAAACTACCAAACCAAACTGTCCTGCCAAAATTGGATTGAATGCAAAAT
32877306 TAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGTACTGTCATGCCAAACTACGCAGC
66 TAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGTACTGTCATGCCAAACTACGCAGC
32877371 CAAATTGCCCTATCGGGAGA
131 CAAATTGCCCTATCGGGAGA
* *
32877391 AAATGGACAGTCATGTCAAATTACCAAACCAAACTG-CCTTGCCAAAATTGGATTGAATGCAAAA
1 AAATGGACAGTCATGCCAAACTACCAAACCAAACTGTCC-TGCCAAAATTGGATTGAATGCAAAA
32877455 TTAAGAGGACATTTCTATAAGCATTCAAATT-GAGACGAAAT-TGACTGTCATGCCAAACTAC
65 TTAAGAGGACATTTCTATAAGCATTCAAATTAG-GACGAAATGT-ACTGTCATGCCAAACTAC
32877516 CCAGATAAAC
Statistics
Matches: 113, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
149 4 0.04
150 109 0.96
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (150 bp):
AAATGGACAGTCATGCCAAACTACCAAACCAAACTGTCCTGCCAAAATTGGATTGAATGCAAAAT
TAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGTACTGTCATGCCAAACTACGCAGC
CAAATTGCCCTATCGGGAGA
Found at i:32877593 original size:46 final size:46
Alignment explanation
Indices: 32877536--32877635 Score: 139
Period size: 46 Copynumber: 2.2 Consensus size: 46
32877526 TGCCCTTCTA
* * * *
32877536 AAATTTGATTGAACT-CAAAATTAAAAGTAGATTTCTATAAGCATTT
1 AAATTTAATTGAA-TGCAAAATTAAAAGAAAATTTCTATAAGCATTC
*
32877582 AAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTC
1 AAATTTAATTGAATGCAAAATTAAAAGAAAATTTCTATAAGCATTC
32877628 AAATTTAA
1 AAATTTAA
32877636 AAAAAATGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 1 0.02
46 47 0.98
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (46 bp):
AAATTTAATTGAATGCAAAATTAAAAGAAAATTTCTATAAGCATTC
Found at i:32877648 original size:147 final size:147
Alignment explanation
Indices: 32877442--32877733 Score: 415
Period size: 147 Copynumber: 2.0 Consensus size: 147
32877432 CCAAAATTGG
* * * ** *
32877442 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAGACGAAATTGACTGTCATG
1 ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGAAAAAAAATGGACTGTCATG
* * * * * *
32877507 CCAAACTACCCAGATAAACTGCCCTTCTAAAATTTGATTGAACT-CAAAATTAAAAGTAGATTTC
66 CCAAACTACCCAGACAAAATGCCCTTCCAAAATTGGATTGAA-TGCAAAATTAAAAGGACATTTC
*
32877571 TATAAGCATTTAAATTTA
130 TATAAGCATTCAAATTTA
*
32877589 ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTAAAAAAAATGGACTGTCATG
1 ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGAAAAAAAATGGACTGTCATG
* * *
32877654 CTAAACTACCCAGCCAAAATTCCCTTCCAAAATTGGATTGAATGCAAAATTAAAAGGACATTTCT
66 CCAAACTACCCAGACAAAATGCCCTTCCAAAATTGGATTGAATGCAAAATTAAAAGGACATTTCT
32877719 ATAAGCATTCAAATT
131 ATAAGCATTCAAATT
32877734 GGGACGAAAT
Statistics
Matches: 127, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
146 1 0.01
147 126 0.99
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.29
Consensus pattern (147 bp):
ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGAAAAAAAATGGACTGTCATG
CCAAACTACCCAGACAAAATGCCCTTCCAAAATTGGATTGAATGCAAAATTAAAAGGACATTTCT
ATAAGCATTCAAATTTA
Found at i:32877862 original size:100 final size:100
Alignment explanation
Indices: 32877589--32878462 Score: 998
Period size: 100 Copynumber: 8.7 Consensus size: 100
32877579 TTTAAATTTA
* * *** **
32877589 ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTAAAAAAAATGGACTGTCATG
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* * * *
32877654 CTAAACTACCCAGCCAAAATTCCCTTCCAAAATTGG
66 CCAAACTACCCAGCCAAACTGCCCTACCAAAATT-G
* *
32877690 ATTGAATGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCTTG
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* *
32877755 CCAAACTACCTAGCCAAACTGCCCTATCAAAATTG
66 CCAAACTACCCAGCCAAACTGCCCTACCAAAATTG
* ** * * *
32877790 ATTGAATGCAAAGTTAAGAAAACATTTCTATAAGCATTAAAATTGGGATGAAATAGACTGTCATG
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* * * * *
32877855 CCAAACTACCAAACTAAATTGCCCTGCCAAAATTG
66 CCAAACTACCCAGCCAAACTGCCCTACCAAAATTG
* * * ** * * * **
32877890 ATTGAATGCAAAATTATGAGAACATTTTTATAAAAATTAAAATTGGGACAAAATGGACTGTTACA
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* * * *
32877955 CTAAACTACCCAACCAAACTGCCTTTCCAAAATTTG
66 CCAAACTACCCAGCCAAACTGCCCTACCAAAA-TTG
* * * *
32877991 ATTGAATGCAAAATTGAGAGGACATTTATATAAGCATACAAATTGGGACAAAATGGACTGTCATG
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* *** *
32878056 CCAAACTACCCAGCAAAACTATTCTGCCAAAATTG
66 CCAAACTACCCAGCCAAACTGCCCTACCAAAATTG
* * * *
32878091 ATTGAATGCAAAATTAAGAGGAAACTTCCATAAGCATTCAAATTGAGA-GAAAATGGACTGTCAT
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG-AAATGGACTGTCAT
* *
32878155 GCCAAACTATCCAACCAAACTGCCCTACCAAAATTTG
65 GCCAAACTACCCAGCCAAACTGCCCTACCAAAA-TTG
* * * * * * * *
32878192 ATTGAATGCAAAATTTAGAGGACACTGCTTTAAGCATTTAAATTGGGA-TAGAATAGACTATCAT
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA-AATGGACTGTCAT
* * * *
32878256 GCCAAACTACCCAGCAAAATTGGCCTGCCAAAATTG
65 GCCAAACTACCCAGCCAAACTGCCCTACCAAAATTG
* *
32878292 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATTGACTGTCATG
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* *
32878357 CCAAACGACCCAGCCAAACTGCCC-AGACAAAATTTG
66 CCAAACTACCCAGCCAAACTGCCCTA-CCAAAA-TTG
* * *
32878393 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTTGGACGAAATGGACTGTTATA
1 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
32878458 CCAAA
66 CCAAA
32878463 TTGCCCTAGC
Statistics
Matches: 649, Mismatches: 117, Indels: 14
0.83 0.15 0.02
Matches are distributed among these distances:
100 333 0.51
101 316 0.49
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.26
Consensus pattern (100 bp):
ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
CCAAACTACCCAGCCAAACTGCCCTACCAAAATTG
Found at i:32877994 original size:201 final size:201
Alignment explanation
Indices: 32877582--32878462 Score: 1000
Period size: 201 Copynumber: 4.4 Consensus size: 201
32877572 ATAAGCATTT
* * * * *** *
32877582 AAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTAAAAAAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTAAAATTGGGACAAAATGGAC
* * * * *
32877647 TGTCATGCTAAACTACCCAGCCAAAATT-CCCTTCCAAAATTGGATTGAATGCAAAATTAAAAGG
66 TGTCATGCCAAACTACCAAG-CAAAATTGCCCTGCCAAAATT-GATTGAATGCAAAATTAAGAGA
* ** * *
32877711 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCTTGCCAAACTACCTAGCCAAACTG
129 ACATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCACGCCAAACTACCCAACCAAACTG
32877776 CCCTAT-CA
194 CCC-ATCCA
* ** ** *
32877784 AAA-TTGATTGAATGCAAAGTTAAGAAAACATTTCTATAAGCATTAAAATTGGGATGAAATAGAC
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTAAAATTGGGACAAAATGGAC
* * *
32877848 TGTCATGCCAAACTACCAAACTAAATTGCCCTGCCAAAATTGATTGAATGCAAAATTATGAGAAC
66 TGTCATGCCAAACTACCAAGCAAAATTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAAC
* ** * * * *
32877913 ATTTTTATAAAAATTAAAATTGGGACAAAATGGACTGTTACACTAAACTACCCAACCAAACTGCC
131 ATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCACGCCAAACTACCCAACCAAACTGCC
**
32877978 TTTCCA
196 CATCCA
* *
32877984 AAATTTGATTGAATGCAAAATTGAGAGGACATTTATATAAGCA-TACAAATTGGGACAAAATGGA
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTA-AAATTGGGACAAAATGGA
* * ***
32878048 CTGTCATGCCAAACTACCCAGCAAAACTATTCTGCCAAAATTGATTGAATGCAAAATTAAGAGGA
65 CTGTCATGCCAAACTACCAAGCAAAATTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGA-GA
* * * * * *
32878113 A-ACTTCCATAAGCATTCAAATTGAGAGAAAATGGACTGTCATGCCAAACTATCCAACCAAACTG
129 ACATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCACGCCAAACTACCCAACCAAACTG
32878177 CCC-TACCA
194 CCCAT-CCA
* * * * * * * *
32878185 AAATTTGATTGAATGCAAAATTTAGAGGACACTGCTTTAAGCATTTAAATTGGGATAGAATAGAC
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTAAAATTGGGACAAAATGGAC
* * * *
32878250 TATCATGCCAAACTACCCAGCAAAATTGGCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAC
66 TGTCATGCCAAACTACCAAGCAAAATTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAAC
* * * * * *
32878315 ATTTCTATAAGCATTCAAATTGGGGCGAAATTGACTGTCATGCCAAACGACCCAGCCAAACTGCC
131 ATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCACGCCAAACTACCCAACCAAACTGCC
**
32878380 CAGACA
196 CATCCA
* * *
32878386 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTTGGACGAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTAAAATTGGGACAAAATGGAC
* *
32878451 TGTTATACCAAA
66 TGTCATGCCAAA
32878463 TTGCCCTAGC
Statistics
Matches: 567, Mismatches: 103, Indels: 19
0.82 0.15 0.03
Matches are distributed among these distances:
199 1 0.00
200 90 0.16
201 469 0.83
202 7 0.01
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (201 bp):
AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTAAAATTGGGACAAAATGGAC
TGTCATGCCAAACTACCAAGCAAAATTGCCCTGCCAAAATTGATTGAATGCAAAATTAAGAGAAC
ATTTCTATAAGCATTCAAATTGGGACAAAATGGACTGTCACGCCAAACTACCCAACCAAACTGCC
CATCCA
Found at i:32878152 original size:301 final size:300
Alignment explanation
Indices: 32877582--32878462 Score: 1053
Period size: 301 Copynumber: 2.9 Consensus size: 300
32877572 ATAAGCATTT
* * * * * ***
32877582 AAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTAAAAAAAATGGAC
1 AAATTTGATTGAATGCAAAATTATGAGAACATTTTTATAAGCATTAAAATTGGGAAAAAATGGAC
* * *
32877647 TGTCATGCTAAACTACCCAGCCAAAATTCCCTTCCAAAATTGGATTGAATGCAAAATTAAAAGGA
66 TGTCATGCTAAACTACCCAGCCAAAA-TGCCTTCCAAAATTTGATTGAATGCAAAATTAAGAGGA
* *
32877712 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCTTGCCAAACTACCTAGCCAAACTGC
130 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGC
* * *
32877777 CCT-ATCAAAATTGATTGAATGCAAAGTTAAGA--AAACATTTCTATAAGCATTAAAATTGGGAT
195 CCTGA-CAAAATTGATTGAATGCAAAATTAAGAGGAAAC--TTCTATAAGCATTCAAATT-GGAC
* * * *
32877839 GAAATAGACTGTCATGCCAAACTA-CCAAACTAAATTGCCCTGCCA
256 GAAATGGACTGTCATGCCAAACTATCC-AACCAAACTGCCCTACCA
** *
32877884 AAA-TTGATTGAATGCAAAATTATGAGAACATTTTTATAAAAATTAAAATTGGGACAAAATGGAC
1 AAATTTGATTGAATGCAAAATTATGAGAACATTTTTATAAGCATTAAAATTGGGAAAAAATGGAC
* ** * * *
32877948 TGTTACACTAAACTACCCAACCAAACTGCCTTTCCAAAATTTGATTGAATGCAAAATTGAGAGGA
66 TGTCATGCTAAACTACCCAGCCAAAATGCC-TTCCAAAATTTGATTGAATGCAAAATTAAGAGGA
* * * * **
32878013 CATTTATATAAGCATACAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAGCAAAACTAT
130 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGC
* * *
32878078 TCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAAACTTCCATAAGCATTCAAATTGAGA-GAA
195 CCTGACAAAATTGATTGAATGCAAAATTAAGAGGAAACTTCTATAAGCATTCAAATTG-GACG-A
32878142 AATGGACTGTCATGCCAAACTATCCAACCAAACTGCCCTACCA
258 AATGGACTGTCATGCCAAACTATCCAACCAAACTGCCCTACCA
* ** * * * *
32878185 AAATTTGATTGAATGCAAAATT-TAGAGGACACTGCTT-TAAGCATTTAAATTGGGATAGAATAG
1 AAATTTGATTGAATGCAAAATTAT-GAGAACA-TTTTTATAAGCATTAAAATTGGGAAAAAATGG
* * *
32878248 ACTATCATGCCAAACTACCCAG-CAAAATTGGCCTGCCAAAA-TTGATTGAATGCAAAATTAAGA
64 ACTGTCATGCTAAACTACCCAGCCAAAA-T-GCCTTCCAAAATTTGATTGAATGCAAAATTAAGA
* * *
32878311 GGACATTTCTATAAGCATTCAAATTGGGGCGAAATTGACTGTCATGCCAAACGACCCAGCCAAAC
127 GGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAAC
* * *
32878376 TGCCCAGACAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTTGGA
192 TGCCCTGACAAAA-TTGATTGAATGCAAAATTAAGAGGAAACTTCTATAAGCATTCAAA-TTGGA
* *
32878441 CGAAATGGACTGTTATACCAAA
255 CGAAATGGACTGTCATGCCAAA
32878463 TTGCCCTAGC
Statistics
Matches: 492, Mismatches: 72, Indels: 30
0.83 0.12 0.05
Matches are distributed among these distances:
300 5 0.01
301 338 0.69
302 135 0.27
303 14 0.03
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (300 bp):
AAATTTGATTGAATGCAAAATTATGAGAACATTTTTATAAGCATTAAAATTGGGAAAAAATGGAC
TGTCATGCTAAACTACCCAGCCAAAATGCCTTCCAAAATTTGATTGAATGCAAAATTAAGAGGAC
ATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCC
CTGACAAAATTGATTGAATGCAAAATTAAGAGGAAACTTCTATAAGCATTCAAATTGGACGAAAT
GGACTGTCATGCCAAACTATCCAACCAAACTGCCCTACCA
Found at i:32889174 original size:37 final size:37
Alignment explanation
Indices: 32889118--32889196 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32889108 CCGAGCTCTA
* * *
32889118 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
32889155 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
32889192 AAGAC
1 AAGAC
32889197 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:32896612 original size:42 final size:42
Alignment explanation
Indices: 32896551--32896650 Score: 173
Period size: 42 Copynumber: 2.4 Consensus size: 42
32896541 GGCTCAAATA
*
32896551 TTGATCAGAATGGGACATGAAGTGATTAGAGCAACTTGTATC
1 TTGATCAGAATGGGGCATGAAGTGATTAGAGCAACTTGTATC
*
32896593 TTGATCAGAATGGGGCATGAAGTGATTAGAGCAGCTTGTATC
1 TTGATCAGAATGGGGCATGAAGTGATTAGAGCAACTTGTATC
*
32896635 TTGATCAGATTGGGGC
1 TTGATCAGAATGGGGC
32896651 GTGTAGCAAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.29, C:0.12, G:0.30, T:0.29
Consensus pattern (42 bp):
TTGATCAGAATGGGGCATGAAGTGATTAGAGCAACTTGTATC
Found at i:32898116 original size:222 final size:221
Alignment explanation
Indices: 32897849--32898446 Score: 955
Period size: 222 Copynumber: 2.7 Consensus size: 221
32897839 CATCAGGTCT
* *
32897849 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTATAA
1 TATCT-CCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
* * *
32897914 CGGAGCAGATTAAAGCTAGTAATCCTATCTCCTTGAGATTACAGTGGAGCGGATTAAAATAAATG
65 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAAG
* *
32897979 ATCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAAAATTTTAGATCTTATATCCCTAAGATT
130 ATCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAAAATTTCAGATCTGATATCCCTAAGATT
32898044 ACAACGGAGCAGATTGAAGGTGAATCC
195 ACAACGGAGCAGATTGAAGGTGAATCC
*
32898071 TATCTCACTGAGATCACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
1 TATCTC-CTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
* *
32898136 CGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTATAGTGGAGCGGATTAAAATAAAAG
65 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAAG
* * * * * *
32898201 ATCTTATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTGATCTTCCTGAGATT
130 ATCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAAAATTTCAGATCTGATATCCCTAAGATT
*
32898266 ACAGCGGAGCAGATTGAAGGTGAATCC
195 ACAACGGAGCAGATTGAAGGTGAATCC
* * *
32898293 TATCTCCTTGAGATTACAGTGGAATAGACCGAAGAATTTTAGATCTTATTTCCCTGATATTACAG
1 TATCTCC-TGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
*
32898358 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGG
65 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAAG
*
32898423 ATCTTATCTCTCTGA-AGTTACAGT
130 ATCTTATCTCCCTGAGA-TTACAGT
32898447 AGAGTAGATC
Statistics
Matches: 347, Mismatches: 26, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
221 3 0.01
222 344 0.99
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (221 bp):
TATCTCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGC
GGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAAGA
TCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAAAATTTCAGATCTGATATCCCTAAGATTA
CAACGGAGCAGATTGAAGGTGAATCC
Found at i:32898210 original size:134 final size:132
Alignment explanation
Indices: 32897704--32898315 Score: 442
Period size: 134 Copynumber: 4.6 Consensus size: 132
32897694 ACAGATCAGT
* * * *
32897704 GAAGAATTTCAGATCTTATCTCCCTAAGATTACAGCGAAGCATATTGAAGCTAGTAATCCTATCT
1 GAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCT
* * * * * * *
32897769 CCCTGATATTACAGTGGAGCGGTTTAAAATAAAGGATCTTATCTCTCTGA-AGTTACAGTAGAGT
66 CCCTGAGATTACAGTGGAGCAGATTAAAATAAA-AATCCTATCTC-CTGAGA-TTACAGTGGAAT
*
32897833 AGATC
128 AGACC
* * * * ** * * *
32897838 ---GCA--TCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG-AATTTCAGATCTTA
1 GAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTA-GT-A-ATCCTA
* ** * **
32897897 TCTCCCTGAGATTATAACGGAGCAGATTAAAGCTAGTAATCCTATCTCCTTGAGATTACAGTGGA
63 TCTCCCTGAGATTACAGTGGAGCAGATTAAA-ATAAAAATCCTATCTCC-TGAGATTACAGTGGA
*** *
32897962 GCGGA-T
126 ATAGACC
* ** * * *** ** ** *
32897968 TAA-AA-TAAATGATCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAAAATTTTAGATCTTA
1 GAAGAATTTCA-GATCTTATCTCCCTGAGATTACAGCGGAGTAGA-TTGAAGCTAGTA-ATCCTA
* * ** ** * *
32898031 TATCCCTAAGATTACAACGGAGCAGATTGAAGGT--GAATCCTATCTCACTGAGATCACAGTGGA
63 TCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAAAAATCCTATCTC-CTGAGATTACAGTGGA
32898094 ATAGACC
126 ATAGACC
32898101 GAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCT
1 GAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCT
* * * *
32898166 CCCTGAGATTATAGTGGAGCGGATTAAAATAAAAGATCTTATCTCCCTAAGATTACAGTGGAATA
66 CCCTGAGATTACAGTGGAGCAGATTAAAATAAAA-ATCCTATCT-CCTGAGATTACAGTGGAATA
32898231 GACC
129 GACC
* * * *
32898235 GAAGAATTTCAGATCTGATCTTCCTGAGATTACAGCGGAGCAGATTGAAGGT-G-AATCCTATCT
1 GAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCT
*
32898298 CCTTGAGATTACAGTGGA
66 CCCTGAGATTACAGTGGA
32898316 ATAGACCGAA
Statistics
Matches: 377, Mismatches: 79, Indels: 46
0.75 0.16 0.09
Matches are distributed among these distances:
128 1 0.00
129 34 0.09
130 2 0.01
131 59 0.16
132 84 0.22
133 11 0.03
134 176 0.47
135 10 0.03
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (132 bp):
GAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCT
CCCTGAGATTACAGTGGAGCAGATTAAAATAAAAATCCTATCTCCTGAGATTACAGTGGAATAGA
CC
Found at i:32898337 original size:134 final size:134
Alignment explanation
Indices: 32898071--32898357 Score: 371
Period size: 134 Copynumber: 2.1 Consensus size: 134
32898061 AGGTGAATCC
* * *
32898071 TATCTCACTGAGATCACAGTGGAATAGACCGAAGAATTTCAGATCTTATCTCCCTGAGATTACAG
1 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTGATCTCCCTGAGATTACAG
* * * * **
32898136 CGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTATAGTGGAGCGGATTAAAATAAAAG
66 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAACAGACGAAAATAAAAG
32898201 ATCT
131 ATCT
* *
32898205 TATCTCCCTAAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTGATCTTCCTGAGATTACAG
1 TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTGATCTCCCTGAGATTACAG
* * * ***
32898270 CGGAGCAGATTGAAGGT-G-AATCCTATCTCCTTGAGATTACAGTGGAATAGACCGAAGAATTTT
66 CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAACAGA-CGAA-AATAAA
32898333 AGATCT
129 AGATCT
* *
32898339 TATTTCCCTGATATTACAG
1 TATCTCCCTGAGATTACAG
32898358 CGGAGCAGAT
Statistics
Matches: 131, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
132 28 0.21
133 3 0.02
134 100 0.76
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (134 bp):
TATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGATCTGATCTCCCTGAGATTACAG
CGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAACAGACGAAAATAAAAG
ATCT
Found at i:32898426 original size:88 final size:88
Alignment explanation
Indices: 32897715--32898445 Score: 344
Period size: 88 Copynumber: 8.3 Consensus size: 88
32897705 AAGAATTTCA
* * * *
32897715 GATCTTATCTCCCTAAGATTACAGCGAAGCATATTGAAGCTAGTAATCCTATCTCCCTGATATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
* *
32897780 CAGTGGAGCGGTTTAAAATAAAG
66 CAGTGGAGCAGATTAAAATAAAG
* ** * * * * * *
32897803 GATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG--GTCTTATCTCCCTGAGATT
1 GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
** ** **
32897864 ACAGTGGAATAGACCGAAGAATTTCA-
65 ACAGTGGAGCAGA-TTAA-AA-TAAAG
* * * *
32897890 GATCTTATCTCCCTGAGATTATAACGGAGCAGATTAAAGCTAGTAATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
* *
32897955 CAGTGGAGCGGATTAAAATAAAT
66 CAGTGGAGCAGATTAAAATAAAG
* ** *** ** ** * * *
32897978 GATCTTATCTCCCTGAGATTACAGTGGAATAGACCAAAAAATTTTAGATCTTATATCCCTAAGAT
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGA-TTGAAGCTAGTA-ATCCTATCTCCCTGAGAT
** **
32898043 TACAACGGAGCAGATTGAAGGT---G
64 TACAGTGGAGCAGATT-AAAATAAAG
* * * * * ** ** * * *
32898066 AATCCTATCTCACTGAGATCACAGTGGAATAGACCGAAG-AATTTCAGATCTTATCTCCCTGAGA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTA-GT-A-ATCCTATCTCCCTGAGA
* * **
32898130 TTACAGCGGAGTAGATTGAAGCT--AG
63 TTACAGTGGAGCAGATT-AAAATAAAG
* * * * * ** ** * *
32898155 TAATCCTATCTCCCTGAGATTATAGTGGAGCGGATT-AAAATAAAAGATCTTATCTCCCTAAGAT
1 -GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA-ATCCTATCTCCCTGAGAT
** ** **
32898219 TACAGTGGAATAGACCGAAGAATTTCA-
64 TACAGTGGAGCAGA-TTAA-AA-TAAAG
* * * *
32898246 GATCTGATCTTCCTGAGATTACAGCGGAGCAGATTGAAGGT-G-AATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
** ** **
32898309 CAGTGGAATAGACCGAAGAATTTTA-
66 CAGTGGAGCAGA-TTAA-AA-TAAAG
* *
32898334 GATCTTATTTCCCTGATATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
1 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
*
32898399 CAGTGGAGCGGATTAAAATAAAG
66 CAGTGGAGCAGATTAAAATAAAG
*
32898422 GATCTTATCTCTCTGA-AGTTACAG
1 GATCTTATCTCCCTGAGA-TTACAG
32898446 TAGAGTAGAT
Statistics
Matches: 492, Mismatches: 124, Indels: 54
0.73 0.19 0.08
Matches are distributed among these distances:
85 25 0.05
86 2 0.00
87 43 0.09
88 261 0.53
89 15 0.03
90 139 0.28
91 6 0.01
92 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (88 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
CAGTGGAGCAGATTAAAATAAAG
Found at i:32898583 original size:46 final size:46
Alignment explanation
Indices: 32898469--32898571 Score: 138
Period size: 46 Copynumber: 2.3 Consensus size: 46
32898459 ATTAGGTCTA
* * *
32898469 ATCTCCCTAAGATTACAGTGGAATAGACCAAAGAATTTCAAATCTT
1 ATCTTCCTGAGATTACAGTGGAATAGACCAAAGAATTTCAAACCTT
* **
32898515 ATCTTCCTGAGATTACAGTGGAATAGACCGAAGAATTTCAGGCCTT
1 ATCTTCCTGAGATTACAGTGGAATAGACCAAAGAATTTCAAACCTT
32898561 ATC-TCCT-AGAT
1 ATCTTCCTGAGAT
32898572 AATGTAGTGG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
44 4 0.08
45 4 0.08
46 43 0.84
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (46 bp):
ATCTTCCTGAGATTACAGTGGAATAGACCAAAGAATTTCAAACCTT
Found at i:32900771 original size:54 final size:54
Alignment explanation
Indices: 32900704--32900841 Score: 276
Period size: 54 Copynumber: 2.6 Consensus size: 54
32900694 ATCCTTACAG
32900704 CGGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGT
1 CGGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGT
32900758 CGGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGT
1 CGGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGT
32900812 CGGGATTACCAGTCCAGGCTAAATCCCCTG
1 CGGGATTACCAGTCCAGGCTAAATCCCCTG
32900842 CAACGACAAT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 84 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (54 bp):
CGGGATTACCAGTCCAGGCTAAATCCCCTGTAATATAAACTCATAGAGTATTGT
Found at i:32916912 original size:6 final size:6
Alignment explanation
Indices: 32916901--32916927 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
32916891 TAGTAAAGTA
32916901 ATTGGT ATTGGT ATTGGT ATTGGT ATT
1 ATTGGT ATTGGT ATTGGT ATTGGT ATT
32916928 CTAATAGCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (6 bp):
ATTGGT
Found at i:32917375 original size:22 final size:22
Alignment explanation
Indices: 32917335--32917376 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
32917325 AGAAATCGGC
**
32917335 AGAGAAAAAAAGAGGGAAAAAA
1 AGAGAAAAAAAGAAAGAAAAAA
*
32917357 AGAGAAAAACAGAAAGAAAA
1 AGAGAAAAAAAGAAAGAAAA
32917377 TTTGTATTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.74, C:0.02, G:0.24, T:0.00
Consensus pattern (22 bp):
AGAGAAAAAAAGAAAGAAAAAA
Found at i:32920796 original size:10 final size:10
Alignment explanation
Indices: 32920775--32920857 Score: 52
Period size: 10 Copynumber: 8.4 Consensus size: 10
32920765 AATAAATAAG
32920775 ATTTAA-ATA
1 ATTTAATATA
32920784 ATTTAATATA
1 ATTTAATATA
*
32920794 ATTATACATAAAA
1 ATT-TA-AT-ATA
32920807 TATTTAA-ATA
1 -ATTTAATATA
32920817 ATTTAATATA
1 ATTTAATATA
32920827 A--TAATATA
1 ATTTAATATA
*
32920835 A--AACATATA
1 ATTTA-ATATA
*
32920844 ATTTAATTTA
1 ATTTAATATA
32920854 ATTT
1 ATTT
32920858 TTAAATACGT
Statistics
Matches: 60, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
8 9 0.15
9 18 0.30
10 20 0.33
11 3 0.05
12 3 0.05
13 4 0.07
14 3 0.05
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (10 bp):
ATTTAATATA
Found at i:32921456 original size:14 final size:14
Alignment explanation
Indices: 32921412--32921463 Score: 65
Period size: 14 Copynumber: 3.9 Consensus size: 14
32921402 TTTTTCTTAT
32921412 TTTTTC-TTATTTG
1 TTTTTCTTTATTTG
* *
32921425 -TTTTCCTT-TTTC
1 TTTTTCTTTATTTG
32921437 TTTTTCTTTATTTG
1 TTTTTCTTTATTTG
32921451 TTTTTCTTTATTT
1 TTTTTCTTTATTT
32921464 CCTAATAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
12 8 0.24
13 9 0.27
14 16 0.48
ACGTcount: A:0.06, C:0.12, G:0.04, T:0.79
Consensus pattern (14 bp):
TTTTTCTTTATTTG
Found at i:32921465 original size:35 final size:35
Alignment explanation
Indices: 32921399--32921466 Score: 86
Period size: 35 Copynumber: 1.9 Consensus size: 35
32921389 GCTACCTATG
*
32921399 TTCTTTTTCTTATTTTTTCTTATTTGTTTTCCTTT
1 TTCTTTTTCTTATTTTTTCTTATTTGATTTCCTTT
*
32921434 TTCTTTTTCTTTATTTGTTT-TTCTTT-ATTTCCT
1 TTCTTTTTC-TTATTT-TTTCTTATTTGATTTCCT
32921467 AATAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 15 0.52
36 11 0.38
37 3 0.10
ACGTcount: A:0.06, C:0.15, G:0.03, T:0.76
Consensus pattern (35 bp):
TTCTTTTTCTTATTTTTTCTTATTTGATTTCCTTT
Found at i:32922654 original size:17 final size:17
Alignment explanation
Indices: 32922634--32922670 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
32922624 AATTTTTGAA
32922634 TTAGTAAATTCTGTGAT
1 TTAGTAAATTCTGTGAT
* *
32922651 TTAGTGAATTTTGTGAT
1 TTAGTAAATTCTGTGAT
32922668 TTA
1 TTA
32922671 AAAAGAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.27, C:0.03, G:0.19, T:0.51
Consensus pattern (17 bp):
TTAGTAAATTCTGTGAT
Found at i:32923952 original size:46 final size:46
Alignment explanation
Indices: 32923899--32924084 Score: 327
Period size: 46 Copynumber: 4.0 Consensus size: 46
32923889 CCATGGAAAA
32923899 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
32923945 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
* *
32923991 TTGTGAAAAGTAGGTATGGTATTTCAGTGAAGAAAACCATATTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
* * *
32924037 TTGTGAAAAGTAGGTATGATCTTTCAGTGAAGGAAACCATACTGAG
1 TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
32924083 TT
1 TT
32924085 ATAGCATTGT
Statistics
Matches: 134, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 134 1.00
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.30
Consensus pattern (46 bp):
TTGTGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAG
Found at i:32926772 original size:38 final size:38
Alignment explanation
Indices: 32926721--32926796 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
32926711 ACGACCCTGA
*
32926721 CAAAGGTCCATCCAGAATATTTGTCATTGATTTCACCG
1 CAAAGGTCCATCCAGAATATTTGTCATTGAGTTCACCG
32926759 CAAAGGTCCATCCAGAATATTTGTCATTGAGTTCACCG
1 CAAAGGTCCATCCAGAATATTTGTCATTGAGTTCACCG
32926797 TATCCCTATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (38 bp):
CAAAGGTCCATCCAGAATATTTGTCATTGAGTTCACCG
Found at i:32927812 original size:23 final size:22
Alignment explanation
Indices: 32927780--32927822 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
32927770 TTTGTTTGTC
*
32927780 TTTTTTTTTATTTACTTTTTCAG
1 TTTTTATTTATTTA-TTTTTCAG
32927803 TTTTTATTTATTTATTTTTC
1 TTTTTATTTATTTATTTTTC
32927823 CTTTATTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.14, C:0.07, G:0.02, T:0.77
Consensus pattern (22 bp):
TTTTTATTTATTTATTTTTCAG
Found at i:32927852 original size:24 final size:23
Alignment explanation
Indices: 32927785--32927861 Score: 56
Period size: 24 Copynumber: 3.3 Consensus size: 23
32927775 TTGTCTTTTT
32927785 TTTTATTTACTTTTTCAGTTT-TT-A
1 TTTTATTTA-TTTTTC--TTTATTGA
32927809 -TTTATTTATTTTTCCTTTATTTG-
1 TTTTATTTATTTTT-CTTTA-TTGA
32927832 TTTTATTTATTTGTT-TATTATTGA
1 TTTTATTTATTT-TTCT-TTATTGA
32927856 TTTTAT
1 TTTTAT
32927862 AATATTTTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 16
0.74 0.00 0.26
Matches are distributed among these distances:
21 3 0.07
22 5 0.11
23 15 0.33
24 20 0.44
25 2 0.04
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.73
Consensus pattern (23 bp):
TTTTATTTATTTTTCTTTATTGA
Found at i:32927858 original size:28 final size:28
Alignment explanation
Indices: 32927804--32927858 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
32927794 CTTTTTCAGT
* *
32927804 TTTTATTTATTTATTTTTCCTTTATTTG
1 TTTTATTTATTTATTTTTCATTGATTTG
*
32927832 TTTTATTTATTTGTTTATT-ATTGATTT
1 TTTTATTTATTTATTT-TTCATTGATTT
32927859 TATAATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 21 0.91
29 2 0.09
ACGTcount: A:0.16, C:0.04, G:0.05, T:0.75
Consensus pattern (28 bp):
TTTTATTTATTTATTTTTCATTGATTTG
Found at i:32927881 original size:13 final size:13
Alignment explanation
Indices: 32927863--32927888 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32927853 TGATTTTATA
32927863 ATATTTTAAATGT
1 ATATTTTAAATGT
32927876 ATATTTTAAATGT
1 ATATTTTAAATGT
32927889 TTTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
ATATTTTAAATGT
Found at i:32927883 original size:23 final size:23
Alignment explanation
Indices: 32927855--32927999 Score: 82
Period size: 21 Copynumber: 6.8 Consensus size: 23
32927845 TTTATTATTG
*
32927855 ATTTTATAATATTTTAAATGTAT
1 ATTTTATAATATTTTAAATATAT
*
32927878 ATTTTA-AATGTTTTATAATATAT
1 ATTTTATAATATTTTA-AATATAT
* * * *
32927901 -TTTTTTAAAAAATTTACATATAT
1 ATTTTAT-AATATTTTAAATATAT
32927924 ATTTT-TAATA--TT--AT-TAT
1 ATTTTATAATATTTTAAATATAT
* *
32927941 -TTTTA-AAAAATTTAAATAT-T
1 ATTTTATAATATTTTAAATATAT
*
32927961 ATTTTTTAA-ATTTTAAATATA-
1 ATTTTATAATATTTTAAATATAT
* *
32927982 ATTTTTTAATATTATAAA
1 ATTTTATAATATTTTAAA
32928000 ACATTTAAAA
Statistics
Matches: 96, Mismatches: 12, Indels: 29
0.70 0.09 0.21
Matches are distributed among these distances:
16 7 0.07
17 3 0.03
18 4 0.04
20 5 0.05
21 24 0.25
22 24 0.25
23 19 0.20
24 10 0.10
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (23 bp):
ATTTTATAATATTTTAAATATAT
Found at i:32927944 original size:38 final size:35
Alignment explanation
Indices: 32927888--32927966 Score: 86
Period size: 38 Copynumber: 2.1 Consensus size: 35
32927878 ATTTTAAATG
* * *
32927888 TTTTATAATATATTTTTTTAAAAAATTTACATATATA
1 TTTT-TAATATATTATTTTAAAAAAATTAAATAT-TA
*
32927925 TTTTTAATATTATTATTTTTAAAAAATTTAAATATTA
1 TTTTTAATA-TATTA-TTTTAAAAAAATTAAATATTA
32927962 TTTTT
1 TTTTT
32927967 TAAATTTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
36 5 0.13
37 15 0.39
38 18 0.47
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (35 bp):
TTTTTAATATATTATTTTAAAAAAATTAAATATTA
Found at i:32928091 original size:13 final size:13
Alignment explanation
Indices: 32928075--32928145 Score: 51
Period size: 13 Copynumber: 5.5 Consensus size: 13
32928065 TAAATGTATA
32928075 TTTTAAAAATTAT
1 TTTTAAAAATTAT
*
32928088 TTTT-TAAA--A-
1 TTTTAAAAATTAT
* *
32928097 TTTTAAATATAATT
1 TTTTAAAAATTA-T
32928111 TTTTAAAATTATTAT
1 TTTTAAAA--ATTAT
*
32928126 TTTTTAAAATTAT
1 TTTTAAAAATTAT
32928139 TTTTAAA
1 TTTTAAA
32928146 GATATTCTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 14
0.68 0.11 0.22
Matches are distributed among these distances:
9 4 0.09
10 3 0.07
12 4 0.09
13 15 0.34
14 7 0.16
15 8 0.18
16 3 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTTAAAAATTAT
Found at i:32928100 original size:22 final size:22
Alignment explanation
Indices: 32928074--32928120 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
32928064 TTAAATGTAT
*
32928074 ATTTTAAAAATTATTTTTTAAA
1 ATTTTAAAAATAATTTTTTAAA
*
32928096 ATTTTAAATATAATTTTTTAAA
1 ATTTTAAAAATAATTTTTTAAA
32928118 ATT
1 ATT
32928121 ATTATTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTTTAAAAATAATTTTTTAAA
Found at i:32928103 original size:35 final size:37
Alignment explanation
Indices: 32928062--32928136 Score: 109
Period size: 38 Copynumber: 2.1 Consensus size: 37
32928052 TTTTATAATC
*
32928062 TTTTAAATGT-ATATTTTAAAA-ATTATTTTTTAAAA
1 TTTTAAATATAATATTTTAAAATATTATTTTTTAAAA
*
32928097 TTTTAAATATAATTTTTTAAAATTATTATTTTTTAAAA
1 TTTTAAATATAATATTTTAAAA-TATTATTTTTTAAAA
32928135 TT
1 TT
32928137 ATTTTTAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
35 9 0.26
36 10 0.29
38 16 0.46
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.57
Consensus pattern (37 bp):
TTTTAAATATAATATTTTAAAATATTATTTTTTAAAA
Found at i:32928129 original size:16 final size:16
Alignment explanation
Indices: 32928108--32928139 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32928098 TTTAAATATA
32928108 ATTTTTTAAAATTATT
1 ATTTTTTAAAATTATT
32928124 ATTTTTTAAAATTATT
1 ATTTTTTAAAATTATT
32928140 TTTAAAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTTTTTAAAATTATT
Found at i:32934132 original size:43 final size:42
Alignment explanation
Indices: 32933980--32934133 Score: 118
Period size: 43 Copynumber: 3.6 Consensus size: 42
32933970 GACATCGTGT
*
32933980 AAGACCACGTCTAGGACGTTGGCCTCGATTTGA-GATTTACATGA
1 AAGACCACGTCTAGGACGTTGGCATCG-TTT-ATGA-TTACATGA
* * * * * * * *
32934024 AAGATCATGTCTGGGACATTGGCGTCATATATGATTACGT-A
1 AAGACCACGTCTAGGACGTTGGCATCGTTTATGATTACATGA
*
32934065 TAAGACC-CTGTCTAGGACAG-TGGCATCGTTGTTTGATTACATGA
1 -AAGACCAC-GTCTAGGAC-GTTGGCATCGTT-TATGATTACATGA
*
32934109 AAGACCACGTCTGGGACGTTGGCAT
1 AAGACCACGTCTAGGACGTTGGCAT
32934134 TGTACGATCT
Statistics
Matches: 84, Mismatches: 18, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
41 1 0.01
42 27 0.32
43 33 0.39
44 23 0.27
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (42 bp):
AAGACCACGTCTAGGACGTTGGCATCGTTTATGATTACATGA
Found at i:32934959 original size:44 final size:44
Alignment explanation
Indices: 32934908--32935244 Score: 496
Period size: 44 Copynumber: 7.7 Consensus size: 44
32934898 TTGAAGTAAA
* *
32934908 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTATCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
* * * *
32934952 AATTGTTGATTAAATGATGCCCAAATGTTGATTTAATGCAGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
* *
32934996 AATTGTTGATTAAATACTGTCCAAATATTGATTGAATGCTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
* **
32935040 AATTGTTGATTAAATGCTGTCCAAATGTTGATTTAATGCAATCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
* * *
32935084 AATTGTTGATTAAATGTTGTCCAAATATTGATTGAATGTTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
* *
32935128 AATTGTTGATTAAATGTTGTCCAAATGTTGATTTAATGCTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
32935172 AATTG-TGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
* **
32935215 AAATGTTGATTAAATGCTGTCTGAATGTTG
1 AATTGTTGATTAAATGCTGTCCAAATGTTG
32935245 GATAATTGCT
Statistics
Matches: 261, Mismatches: 31, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
43 40 0.15
44 221 0.85
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (44 bp):
AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCC
Found at i:32935064 original size:88 final size:88
Alignment explanation
Indices: 32934908--32935244 Score: 550
Period size: 88 Copynumber: 3.8 Consensus size: 88
32934898 TTGAAGTAAA
* * *
32934908 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTATCCAATTGTTGATTAAATGATGCC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
32934973 CAAATGTTGATTTAATGCAGTCC
66 CAAATGTTGATTTAATGCAGTCC
*
32934996 AATTGTTGATTAAATACTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
*
32935061 CAAATGTTGATTTAATGCAATCC
66 CAAATGTTGATTTAATGCAGTCC
* * *
32935084 AATTGTTGATTAAATGTTGTCCAAATATTGATTGAATGTTGTCCAATTGTTGATTAAATGTTGTC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
*
32935149 CAAATGTTGATTTAATGCTGTCC
66 CAAATGTTGATTTAATGCAGTCC
* *
32935172 AATTG-TGATTAAATGCTGTCCAAATGTTGATTGAATGCTGTCCAAATGTTGATTAAATGCTGTC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
**
32935236 TGAATGTTG
66 CAAATGTTG
32935245 GATAATTGCT
Statistics
Matches: 231, Mismatches: 18, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
87 61 0.26
88 170 0.74
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.39
Consensus pattern (88 bp):
AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
CAAATGTTGATTTAATGCAGTCC
Found at i:32935229 original size:11 final size:11
Alignment explanation
Indices: 32935087--32935230 Score: 50
Period size: 11 Copynumber: 13.2 Consensus size: 11
32935077 GCAATCCAAT
32935087 TGTTGATTAAA
1 TGTTGATTAAA
*
32935098 TGTTG-TCCAAA
1 TGTTGAT-TAAA
* *
32935109 TATTGATTGAA
1 TGTTGATTAAA
* *
32935120 TGTTG-TCCAAT
1 TGTTGAT-TAAA
32935131 TGTTGATTAAA
1 TGTTGATTAAA
*
32935142 TGTTG-TCCAAA
1 TGTTGAT-TAAA
*
32935153 TGTTGATTTAA
1 TGTTGATTAAA
* **
32935164 TGCTG-TCCAA
1 TGTTGATTAAA
32935174 T-TGTGATTAAA
1 TGT-TGATTAAA
* *
32935185 TGCTG-TCCAAA
1 TGTTGAT-TAAA
*
32935196 TGTTGATTGAA
1 TGTTGATTAAA
* *
32935207 TGCTG-TCCAAA
1 TGTTGAT-TAAA
32935218 TGTTGATTAAA
1 TGTTGATTAAA
32935229 TG
1 TG
32935231 CTGTCTGAAT
Statistics
Matches: 91, Mismatches: 29, Indels: 26
0.62 0.20 0.18
Matches are distributed among these distances:
10 11 0.12
11 75 0.82
12 5 0.05
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.41
Consensus pattern (11 bp):
TGTTGATTAAA
Found at i:32935254 original size:22 final size:22
Alignment explanation
Indices: 32934911--32935244 Score: 409
Period size: 22 Copynumber: 15.2 Consensus size: 22
32934901 AAGTAAAAAT
32934911 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * *
32934933 TATTGATTGAATGCTATCCAAT
1 TGTTGATTAAATGCTGTCCAAA
* *
32934955 TGTTGATTAAATGATGCCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
32934977 TGTTGATTTAATGCAGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
*
32934999 TGTTGATTAAATACTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * *
32935021 TATTGATTGAATGCTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
32935043 TGTTGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* ** *
32935065 TGTTGATTTAATGCAATCCAAT
1 TGTTGATTAAATGCTGTCCAAA
*
32935087 TGTTGATTAAATGTTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* * * *
32935109 TATTGATTGAATGTTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
*
32935131 TGTTGATTAAATGTTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
* *
32935153 TGTTGATTTAATGCTGTCCAAT
1 TGTTGATTAAATGCTGTCCAAA
32935175 TG-TGATTAAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
*
32935196 TGTTGATTGAATGCTGTCCAAA
1 TGTTGATTAAATGCTGTCCAAA
**
32935218 TGTTGATTAAATGCTGTCTGAA
1 TGTTGATTAAATGCTGTCCAAA
32935240 TGTTG
1 TGTTG
32935245 GATAATTGCT
Statistics
Matches: 261, Mismatches: 50, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
21 19 0.07
22 242 0.93
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (22 bp):
TGTTGATTAAATGCTGTCCAAA
Found at i:32940018 original size:20 final size:19
Alignment explanation
Indices: 32939982--32940024 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
32939972 GAAATTGCAA
*
32939982 AAAAATATAAAATTTAT-T
1 AAAAATATAAAACTTATCT
32940000 AAAAATAATAGAAACTTATCT
1 AAAAAT-ATA-AAACTTATCT
32940021 AAAA
1 AAAA
32940025 TTTATGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 6 0.29
19 3 0.14
20 7 0.33
21 5 0.24
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (19 bp):
AAAAATATAAAACTTATCT
Found at i:32940838 original size:9 final size:9
Alignment explanation
Indices: 32940826--32940921 Score: 52
Period size: 9 Copynumber: 9.9 Consensus size: 9
32940816 ACTTTTTTGC
32940826 AATTTTTAT
1 AATTTTTAT
32940835 AATTTTTAAT
1 AATTTTT-AT
32940845 ATATTTTT-T
1 A-ATTTTTAT
32940854 GCAATTTTATATT
1 --AATTTT-TA-T
*
32940867 AAATTTTAAT
1 -AATTTTTAT
*
32940877 ATTTTTTAT
1 AATTTTTAT
32940886 AATTTTT-T
1 AATTTTTAT
* *
32940894 CCAGTTCTTAT
1 --AATTTTTAT
32940905 AATTTTTAT
1 AATTTTTAT
*
32940914 TATTTTTA
1 AATTTTTA
32940922 AAAATTCTAC
Statistics
Matches: 67, Mismatches: 10, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
8 1 0.01
9 35 0.52
10 14 0.21
11 10 0.15
12 6 0.09
13 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (9 bp):
AATTTTTAT
Found at i:32940840 original size:30 final size:32
Alignment explanation
Indices: 32940806--32940883 Score: 110
Period size: 30 Copynumber: 2.5 Consensus size: 32
32940796 TTTTTTTTCT
32940806 ATTTTTAATA-ACTTTTTTGCAATTTT-TA-TA
1 ATTTTTAATATA-TTTTTTGCAATTTTATATTA
32940836 ATTTTTAATATATTTTTTGCAATTTTATATTA
1 ATTTTTAATATATTTTTTGCAATTTTATATTA
*
32940868 AATTTTAATAT-TTTTT
1 ATTTTTAATATATTTTT
32940884 ATAATTTTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
30 24 0.55
31 8 0.18
32 12 0.27
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.63
Consensus pattern (32 bp):
ATTTTTAATATATTTTTTGCAATTTTATATTA
Found at i:32940841 original size:10 final size:10
Alignment explanation
Indices: 32940806--32940893 Score: 54
Period size: 10 Copynumber: 8.7 Consensus size: 10
32940796 TTTTTTTTCT
*
32940806 ATTTTTAATA
1 ATTTTTTATA
**
32940816 ACTTTTTTGCA
1 A-TTTTTTATA
32940827 A-TTTTTATA
1 ATTTTTTATA
*
32940836 ATTTTTAATA
1 ATTTTTTATA
**
32940846 TATTTTTTGCA
1 -ATTTTTTATA
*
32940857 ATTTTATATTA
1 ATTTTTTA-TA
* *
32940868 AATTTTAAT-
1 ATTTTTTATA
32940877 ATTTTTTATA
1 ATTTTTTATA
32940887 ATTTTTT
1 ATTTTTT
32940894 CCAGTTCTTA
Statistics
Matches: 56, Mismatches: 17, Indels: 10
0.67 0.20 0.12
Matches are distributed among these distances:
9 14 0.25
10 22 0.39
11 20 0.36
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (10 bp):
ATTTTTTATA
Found at i:32940905 original size:41 final size:42
Alignment explanation
Indices: 32940826--32940905 Score: 101
Period size: 41 Copynumber: 1.9 Consensus size: 42
32940816 ACTTTTTTGC
* *
32940826 AATTTTTATAATTTTTAATATATTTTTTGCAATTTTATATTA
1 AATTTTAATAATTTTTAATATATTTTTTCCAATTTTATATTA
* *
32940868 AATTTTAAT-ATTTTTTATA-ATTTTTTCCAGTTCTTATA
1 AATTTTAATAATTTTTAATATATTTTTTCCAATT-TTATA
32940906 ATTTTTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
40 11 0.33
41 14 0.42
42 8 0.24
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (42 bp):
AATTTTAATAATTTTTAATATATTTTTTCCAATTTTATATTA
Found at i:32940936 original size:26 final size:27
Alignment explanation
Indices: 32940867--32940966 Score: 87
Period size: 26 Copynumber: 3.7 Consensus size: 27
32940857 ATTTTATATT
* **
32940867 AAATTTTAATATTTTTTATAATTTTTTC
1 AAATTCTAA-ATTTTTTATAATTTTTAA
* * *
32940895 CAGTTCTTATAA-TTTTTATTATTTTTAA
1 AAATTC-TA-AATTTTTTATAATTTTTAA
* *
32940923 AAATTCT-ACTTTTTTATAATTTTTGA
1 AAATTCTAAATTTTTTATAATTTTTAA
32940949 AAATTCTAAATTTTTTAT
1 AAATTCTAAATTTTTTAT
32940967 GACTTTAGAA
Statistics
Matches: 56, Mismatches: 12, Indels: 9
0.73 0.16 0.12
Matches are distributed among these distances:
25 1 0.02
26 21 0.38
27 10 0.18
28 20 0.36
29 3 0.05
30 1 0.02
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (27 bp):
AAATTCTAAATTTTTTATAATTTTTAA
Found at i:32948616 original size:44 final size:44
Alignment explanation
Indices: 32948562--32948656 Score: 145
Period size: 44 Copynumber: 2.2 Consensus size: 44
32948552 CCTATTAGCT
* * * *
32948562 AATACCATACACAAGCAGACTTTATACATTTCTCACATTGGTGA
1 AATACTATACAAAAGCAGACTTTATACAATTCACACATTGGTGA
*
32948606 AATACTATACAAAAGCAGACTTTATACAATTCACCCATTGGTGA
1 AATACTATACAAAAGCAGACTTTATACAATTCACACATTGGTGA
32948650 AATACTA
1 AATACTA
32948657 AACTTACACA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (44 bp):
AATACTATACAAAAGCAGACTTTATACAATTCACACATTGGTGA
Found at i:32956350 original size:25 final size:27
Alignment explanation
Indices: 32956290--32956350 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
32956280 CCAGGTAAGG
*
32956290 CTTCTTCTCCTTCATCCGTTCTTCATTC
1 CTTC-TCTTCTTCATCCGTTCTTCATTC
*
32956318 CTT-T-TTCTTCTTCCGTTCTTCA-T-
1 CTTCTCTTCTTCATCCGTTCTTCATTC
32956341 CTTCTCTTCT
1 CTTCTCTTCT
32956351 CAGCATATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
23 3 0.10
24 2 0.07
25 20 0.69
26 1 0.03
28 3 0.10
ACGTcount: A:0.05, C:0.36, G:0.03, T:0.56
Consensus pattern (27 bp):
CTTCTCTTCTTCATCCGTTCTTCATTC
Found at i:32956524 original size:15 final size:12
Alignment explanation
Indices: 32956489--32956520 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
32956479 CGTTCTCACT
*
32956489 AAAATTGGTAAA
1 AAAATCGGTAAA
32956501 AAAATCGGTAAA
1 AAAATCGGTAAA
32956513 AAAATCGG
1 AAAATCGG
32956521 CGGTTCCAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (12 bp):
AAAATCGGTAAA
Found at i:32956866 original size:12 final size:13
Alignment explanation
Indices: 32956843--32956868 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32956833 TCAATGAACC
32956843 CTTAATTTTTTTG
1 CTTAATTTTTTTG
32956856 CTTAATTTTTTTG
1 CTTAATTTTTTTG
32956869 GTACTCAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (13 bp):
CTTAATTTTTTTG
Found at i:32962902 original size:252 final size:251
Alignment explanation
Indices: 32962355--32963584 Score: 1919
Period size: 252 Copynumber: 4.9 Consensus size: 251
32962345 CCAGTCAGGC
* * *
32962355 TCATCTTCTTCCCCTCTTTCCTGGTCTTTTGATCCAACTTTGGCAACAGCGTCCA-TGGTCAGAA
1 TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACAGCGTCCACT-GTCAGCA
* * * ** *
32962419 AAGGAGTTTGCTTGTCAACTTTGTCTTCTGCTATCAGGTCTTCATATTTCTCCGAAGGCTTAGAA
65 AAGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAA
* * *
32962484 GTTTCATGATGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTTTGCATCCT-
130 GTTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTC
*
32962548 -CCTCTTCTAGTTTCAGATCCTCCCTTGCTTTTGGTTTTGTATCCCCACCCTTTGAT
195 CCCTCTTCTAGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGAT
*
32962604 TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACAGCATCCACTGTCAGCAA
1 TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACAGCGTCCACTGTCAGCAA
* * * * *
32962669 AGGAGCTTGCTTATCAACTTCGTCTTCGGCTACCTGGTCTTCATGTTTCTCTGAAGGCTCAGAAG
66 AGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAAG
* * *
32962734 TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCAAGTTCTTTTGCATCCTCC
131 TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTCC
* *
32962799 TCCTCTTCTAGTTTTAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGGT
196 -CCTCTTCTAGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGAT
*
32962856 TCATCTTCTTGCCCTCTTTCCTGATCTTTCGATCCAACTTTGGCAACAGCGTCCACTGTCAGCAA
1 TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACAGCGTCCACTGTCAGCAA
32962921 AGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAAG
66 AGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAAG
32962986 TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTCC
131 TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTCC
* *
32963051 CTCTCTTCTCGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGGT
196 C-CTCTTCTAGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGAT
*
32963108 TCATCTTCTTGCCCTCTTTCCTGATCTTTCGATCCAACTTTGGCAACAGCGTCCACTGTCAGCAA
1 TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACAGCGTCCACTGTCAGCAA
32963173 AGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAAG
66 AGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAAG
32963238 TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTCC
131 TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTCC
*
32963303 CTCTCTTCTCGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGAT
196 C-CTCTTCTAGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGAT
* * * * * ** * *
32963360 GCATCTTCTAGCCTTCTTTCCTGTTCTTTTGATTCAACTTTTACAAGAGTGTTGTCCACTGTCAG
1 TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACA--G-CGTCCACTGTCAG
* * * *
32963425 CAAAGGAGCTTGCTTATCAACTTTGT-TCTCTACTATCAGGTCTTCACATTTCTCCGAAGGCTTA
63 CAAAGGAGCTTGCTTATCAACTTTGTCT-TCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTA
* * * * *
32963489 GAAGTTTCATGGTGAACGCCTCCTTTATCTGTAAAAGTTCTAACAGAATCATGTTCTACTGCCTC
127 GAAGTTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTC
*
32963554 CTCCCCCTTTTCTAGTTTCAGATCCTCCCTT
192 CT-CCCCTCTTCTAGTTTCAGATCCTCCCTT
32963585 ACTTCTGATT
Statistics
Matches: 919, Mismatches: 52, Indels: 14
0.93 0.05 0.01
Matches are distributed among these distances:
249 176 0.19
250 1 0.00
251 1 0.00
252 581 0.63
254 2 0.00
255 155 0.17
256 3 0.00
ACGTcount: A:0.18, C:0.28, G:0.16, T:0.38
Consensus pattern (251 bp):
TCATCTTCTTGCCCTCTTTCCTGATCTTTTGATCCAACTTTGGCAACAGCGTCCACTGTCAGCAA
AGGAGCTTGCTTATCAACTTTGTCTTCTGCTACCAGGTCTTCACGTTTCTCTGAAGGCTTAGAAG
TTTCATGGTGAACACCTCCTTCATTTGTAGAAGTTCTAACAGAATCATGTTCTTCTGCCTCCTCC
CCTCTTCTAGTTTCAGATCCTCCCTTGCTTTTGGTTCTGTATCCCCACCCTTTGAT
Found at i:32978489 original size:44 final size:43
Alignment explanation
Indices: 32978414--32978623 Score: 110
Period size: 44 Copynumber: 4.8 Consensus size: 43
32978404 CCAAGCCTTG
* * * *
32978414 TCTCCCTAAGCAGTAGTGGAGAAGGGT-GAAGATTGTAGATCTTA
1 TCTCCATAAGCAGTAGTGGAGCA-GATCGAAGA-CGTAGATCTTA
**
32978458 TCTCCATAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTA
1 TCTCCATAAGCAGTAGTGGAGCAGATCGAAGACGTAG-ATCTTA
** ** * *
32978502 TCTTTCC--AAG-A-TAGTGGGAAGCAGATTTAAGCCACCAAG-CCTTG
1 TC--TCCATAAGCAGTAGT-GG-AGCAGATCGAAG--ACGTAGATCTTA
* * * * *
32978546 TCTCCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCATAAGCAGTAGTGGAGCAGATCGAAGA-CGTAGATCTTA
*
32978590 TCTCCCA-AAGCAGTAATGGAGCAGATCGAAGACG
1 TCT-CCATAAGCAGTAGTGGAGCAGATCGAAGACG
32978624 GCGAATCTTA
Statistics
Matches: 124, Mismatches: 27, Indels: 31
0.68 0.15 0.17
Matches are distributed among these distances:
42 8 0.06
43 10 0.08
44 91 0.73
45 5 0.04
46 10 0.08
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (43 bp):
TCTCCATAAGCAGTAGTGGAGCAGATCGAAGACGTAGATCTTA
Found at i:32978632 original size:44 final size:44
Alignment explanation
Indices: 32978452--32979164 Score: 133
Period size: 44 Copynumber: 16.2 Consensus size: 44
32978442 AAGATTGTAG
32978452 ATCTTATCT-CCATAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCA-AAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* ** ** *
32978496 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCAAAGCAGTAGT-GG-AGCAGATCGAAGACGGCGA
* * * * * * ** *
32978539 AGCCTTGTCTCCCTAAGCAGTAGTGGAGAAGGTTGAAGATTG-TA
1 A-TCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
*
32978583 GATCTTATCTCCCAAAGCAGTAATGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* * ** * ** *
32978628 ATCTTATCTTTCC-AAG-A-TAGTGGAAAGCAAATTTAAGCCACCAA
1 ATCTTATC-TCCCAAAGCAGTAGTGG--AGCAGATCGAAGACGGCGA
* * * ** * * * * ** *
32978672 ACCTTGTCTTCCTGAGCAGCAGTGGAGAAGGTTGAAGATTG-TA
1 ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* * *
32978715 GATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGA
1 -ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* ** ** *
32978760 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCAAAGCAGTAGT-GG-AGCAGATCGAAGACGGCGA
* * ** * * * * * ****
32978803 AGCCTTGTCTCCCTGAGTAGTAGTAGAGTAGGTTGAAGA-TTATA
1 A-TCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* * *
32978847 GATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGA
1 -ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* ** ** *
32978892 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCAAAGCAGTAGT-GG-AGCAGATCGAAGACGGCGA
* * ** * * * * * ****
32978935 AGCCTTGTCTCCCTGAGTAGTAGTAGAGTAGGTTGAAGA-TTATA
1 A-TCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
*
32978979 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
* ** ** *
32979024 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCAAAGCAGTAGT-GG-AGCAGATCGAAGACGGCGA
* ** * * * ** *****
32979067 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAGATTATAA
1 A-TCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
*
32979112 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
32979156 ATCTTATCT
1 ATCTTATCT
32979165 TTCCAAGATA
Statistics
Matches: 469, Mismatches: 153, Indels: 94
0.66 0.21 0.13
Matches are distributed among these distances:
42 21 0.04
43 44 0.09
44 348 0.74
45 34 0.07
46 22 0.05
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCAAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
Found at i:32978639 original size:132 final size:132
Alignment explanation
Indices: 32978402--32979413 Score: 1673
Period size: 132 Copynumber: 7.7 Consensus size: 132
32978392 ACTGGTGAAA
* * * * *
32978402 CACCAAGCCTTGTCTCCCTAAGCAGTAGTGGAGAAGGGTGAAGATTGTAGATCTTATCTCCATAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAA
32978467 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
32978532 GC
131 GC
* * * *
32978534 CACCAAGCCTTGTCTCCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCAAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAA
* * *
32978599 GCAGTAATGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGAAAGCAAATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
32978664 GC
131 GC
* * *
32978666 CACCAAACCTTGTCTTCCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAA
* *
32978731 GCAGTAGTGGAGCAAATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
32978796 GC
131 GC
* * * *
32978798 CACCAAGCCTTGTCTCCCTGAGTAGTAGTAGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAA
* *
32978863 GCAGTAGTGGAGCAAATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
32978928 GC
131 GC
* * * *
32978930 CACCAAGCCTTGTCTCCCTGAGTAGTAGTAGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAA
32978995 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
32979060 GC
131 GC
* * * *
32979062 CACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAGATTATAAATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAA
32979127 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
32979192 GC
131 GC
* * * *
32979194 CACCAAGCCTTATCTCCCTGAGCAGCAGTGGAAAAGGGTAAAGATTATAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAA
32979259 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
32979324 GC
131 GC
* * * *
32979326 CACCAAGCCTTATCTCCCTGAGCAGCAGTGGAAAAGGGTAAAGATTATAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAA
32979391 GCAGTAGTGGAGCAGATCGAAGA
66 GCAGTAGTGGAGCAGATCGAAGA
32979414 TGGCAGATTT
Statistics
Matches: 845, Mismatches: 35, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 845 1.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GC
Found at i:32979501 original size:396 final size:392
Alignment explanation
Indices: 32978402--32979545 Score: 1600
Period size: 396 Copynumber: 2.9 Consensus size: 392
32978392 ACTGGTGAAA
* * *
32978402 CACCAAGCCTTGTCTCCCTAAGCAGTAGTGGAGAAGGGTGAAGATTGTAGATCTTATCTCCATAA
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGGTGAAGATTATAGATCTTATCTCCCTAA
32978467 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
* * *
32978532 GCCACCAAGCCTTGTCTCCCTAAGCAGTAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCA
131 GCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCT
* *
32978597 AAGCAGTAATGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGAAAGCAAATTT
196 AAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGG--GGCAAATTT
* * *
32978662 AAGCCACCAAACCTTGT-CTT-CCTGAGCAGCAGTGGAGA-AGGTTGAAGATTGTAGATCTTATC
259 AAGCCA--AAA--TTCTACTTCCCTGAGCAGCAGTGGA-ATAGGTTAAAGATTATAGATCTTATC
* *
32978724 TCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCA
319 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCA
32978789 GATTTAAGC
384 GATTTAAGC
* * * *
32978798 CACCAAGCCTTGTCTCCCTGAGTAGTAGTAGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGGTGAAGATTATAGATCTTATCTCCCTAA
* *
32978863 GCAGTAGTGGAGCAAATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
* * *
32978928 GCCACCAAGCCTTGTCTCCCTGAGTAGTAGTAGAGTAGGTTGAAGATTATAGATCTTATCTCCCT
131 GCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCT
*
32978993 AAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTT
196 AAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGG--GCAAATTT
* ** * *
32979058 AAGCCACCAAGCCTTA-TCTCCCTGAGCAGCAGTGGAGTAGGTTAAAGATTATAAATCTTATCTC
259 AAGCCA-AAATTC-TACT-TCCCTGAGCAGCAGTGGAATAGGTTAAAGATTATAGATCTTATCTC
32979122 CCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGA
321 CCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGA
32979187 TTTAAGC
386 TTTAAGC
* * * *
32979194 CACCAAGCCTTATCTCCCTGAGCAGCAGTGGAAAAGGGTAAAGATTATAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGGTGAAGATTATAGATCTTATCTCCCTAA
32979259 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
* * * * *
32979324 GCCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAAAAGGGTAAAGATTATAGATCTTATCTCCCT
131 GCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCT
* * * * ** * *
32979389 AAGCAGTAGTGGAGCAGATCGAAGATGGC-AGATTTTA-CCTCCCTGTGGTTATAGTGGGGTACA
196 AAGCAGTAGTGGAGCAGATCGAAGACGGCGA-ATCTTATCTTTCC--AAG--ATAGTGGGGCAAA
* * * * *
32979452 TTGAAGCCAATAATTCTACTTCCCT-AGACAACAGTAGAATAGATTAAAGATTACAGATCTTATC
256 TTTAAGCCAA-AATTCTACTTCCCTGAG-CAGCAGTGGAATAGGTTAAAGATTATAGATCTTATC
* *
32979516 TCCCTAGGCAGTAGTGGAGCAGATCAAAGA
319 TCCCTAAGCAGTAGTGGAGCAGATCGAAGA
32979546 TGACAAATTT
Statistics
Matches: 667, Mismatches: 66, Indels: 30
0.87 0.09 0.04
Matches are distributed among these distances:
394 2 0.00
395 11 0.02
396 630 0.94
397 16 0.02
399 8 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (392 bp):
CACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGGTGAAGATTATAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GCCACCAAGCCTTGTCTCCCTGAGCAGTAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCT
AAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGGCAAATTTAA
GCCAAAATTCTACTTCCCTGAGCAGCAGTGGAATAGGTTAAAGATTATAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
GC
Found at i:32979502 original size:264 final size:263
Alignment explanation
Indices: 32978442--32979545 Score: 1511
Period size: 264 Copynumber: 4.2 Consensus size: 263
32978432 GAGAAGGGTG
* *
32978442 AAGATTGTAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTT
1 AAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTT
* * *
32978507 CCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGTAGTGGAGAAGGT
66 CCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGAAGGT
* * * *
32978572 TGAAGATTGTAGATCTTATCTCCCAAAGCAGTAATGGAGCAGATCGAAGACGGCGAATCTTATCT
131 TAAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
* * * * ** * *
32978637 TTCCAAGATAGTGGAAAGCAAATTTAAGCCACCAAACCTTGTCTTCCTGAGCAGCAGTGGAGA-A
196 TTCCAAGATAGTGG-GAGCAGATTTAAGCCAACAAGCCTACTCTCCCTGAGCAGCAGTAGA-ATA
*
32978701 GGTTG
259 GGTTA
* * *
32978706 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAATCTTATCTTT
1 AAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTT
* * * * *
32978771 CCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGTAGTAGTAGAGTAGGT
66 CCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGAAGGT
* * *
32978836 TGAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGTGAATCTTATCT
131 TAAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
* ** * * *
32978901 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGTAGTAGTAGAGTAG
196 TTCCAAGATAGTGGG-AGCAGATTTAAGCCAACAAGCCTACTCTCCCTGAGCAGCAGTAGAATAG
*
32978966 GTTG
260 GTTA
32978970 AAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTT
1 AAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTT
*
32979035 CCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGT
66 CCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGAAGGT
*
32979100 TAAAGATTATAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
131 TAAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
* * *
32979165 TTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTA-TCTCCCTGAGCAGCAGTGGAAAA
196 TTCCAAGATAGTGGG-AGCAGATTTAAGCCAACAAGCC-TACTCTCCCTGAGCAGCAGTAGAATA
*
32979229 GGGTA
259 GGTTA
32979234 AAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTT
1 AAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTT
* *
32979299 CCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAAAAGGG
66 CCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGAAGGT
* *
32979364 TAAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGC-AGATTTTA-C
131 TAAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA-ATCTTATC
* * ** * * * * ** *
32979427 CTCCCTGTGGTTATAGTGGG-GTACATTGAAGCCAATAATTCTACT-TCCCT-AGACAACAGTAG
195 TTTCC--AAG--ATAGTGGGAGCAGATTTAAGCCAACAAGCCTACTCTCCCTGAG-CAGCAGTAG
*
32979489 AATAGATTA
255 AATAGGTTA
* * *
32979498 AAGATTACAGATCTTATCTCCCTAGGCAGTAGTGGAGCAGATCAAAGA
1 AAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA
32979546 TGACAAATTT
Statistics
Matches: 766, Mismatches: 64, Indels: 20
0.90 0.08 0.02
Matches are distributed among these distances:
263 7 0.01
264 734 0.96
265 17 0.02
267 8 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (263 bp):
AAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTT
CCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGAAGGT
TAAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCT
TTCCAAGATAGTGGGAGCAGATTTAAGCCAACAAGCCTACTCTCCCTGAGCAGCAGTAGAATAGG
TTA
Done.