Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 117 of 153
Found at i:36616212 original size:18 final size:18
Alignment explanation
Indices: 36616155--36616212 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
36616145 ATTACCGGAC
36616155 TGAATAACTGATTGTTAT
1 TGAATAACTGATTGTTAT
* * *
36616173 TG-AT--C-GTTTGATAC
1 TGAATAACTGATTGTTAT
*
36616187 TAAATAACTGATTGTTAT
1 TGAATAACTGATTGTTAT
36616205 TGAATAAC
1 TGAATAAC
36616213 AATAATCAAA
Statistics
Matches: 28, Mismatches: 8, Indels: 8
0.64 0.18 0.18
Matches are distributed among these distances:
14 7 0.25
15 3 0.11
17 3 0.11
18 15 0.54
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (18 bp):
TGAATAACTGATTGTTAT
Found at i:36631708 original size:48 final size:46
Alignment explanation
Indices: 36631600--36631812 Score: 193
Period size: 46 Copynumber: 4.6 Consensus size: 46
36631590 TCATTTGTGT
* * * *
36631600 GCTAATGTAAGACATGTCTGGGACATGCATCAGCCAC-A-ATATGAAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATAT--AA
* *
36631646 GATAGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGATATTTAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATA--TAA
* * * * *
36631694 GCTAGTGTAAGACATGTCTAAGACATGCATCGGCATTGAGGTGA-GA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGAT-ATAA
* * *
36631740 GCTAGTGTAAGACATGTCTCGGACATGCATCGGCCTCGCGAGATACA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATA-A
*
36631787 GCTAGTGTAA-ACCTGTCT-GCGACATG
1 GCTAGTGTAAGACATGTCTAG-GACATG
36631813 GCGTCAACTT
Statistics
Matches: 137, Mismatches: 22, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
45 2 0.01
46 80 0.58
47 12 0.09
48 41 0.30
49 1 0.01
50 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATATAA
Found at i:36639486 original size:16 final size:18
Alignment explanation
Indices: 36639455--36639489 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
36639445 CAATTAACCC
36639455 CTCAATTAAGATAATTTT
1 CTCAATTAAGATAATTTT
36639473 CTCAATT-A-ATAATTTT
1 CTCAATTAAGATAATTTT
36639489 C
1 C
36639490 ATAAACATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 1 0.06
18 7 0.41
ACGTcount: A:0.37, C:0.14, G:0.03, T:0.46
Consensus pattern (18 bp):
CTCAATTAAGATAATTTT
Found at i:36645406 original size:76 final size:76
Alignment explanation
Indices: 36645325--36645473 Score: 244
Period size: 76 Copynumber: 2.0 Consensus size: 76
36645315 ACCCTTTATA
** * **
36645325 TTGGGCACAATGACATTGCTTTAATGAAGACATGGTCCATTTTATGAGAAATAGGAATCCATTTA
1 TTGGGCACAAACACATTGCTTTAATGAAGACATGATCCATTTTATGAGAAATAGGAATCCATCAA
36645390 TTTACTTTAGG
66 TTTACTTTAGG
*
36645401 TTGGGCACAAACACATTGCTTTAATGAAGACATGATCCATTTTTTGAGAAATAGGAATCCATCAA
1 TTGGGCACAAACACATTGCTTTAATGAAGACATGATCCATTTTATGAGAAATAGGAATCCATCAA
36645466 TTTACTTT
66 TTTACTTT
36645474 CTATGTAGAT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 67 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (76 bp):
TTGGGCACAAACACATTGCTTTAATGAAGACATGATCCATTTTATGAGAAATAGGAATCCATCAA
TTTACTTTAGG
Found at i:36646288 original size:19 final size:17
Alignment explanation
Indices: 36646248--36646291 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
36646238 AAGAATATTT
*
36646248 AAATGAAAATTGTTAAA
1 AAATGAAAATTATTAAA
*
36646265 TAATGAAAAGTTATATAAA
1 AAATGAAAA-TTAT-TAAA
36646284 AAATGAAA
1 AAATGAAA
36646292 TGACAGGGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 8 0.36
18 3 0.14
19 11 0.50
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.27
Consensus pattern (17 bp):
AAATGAAAATTATTAAA
Found at i:36646391 original size:38 final size:38
Alignment explanation
Indices: 36646347--36646423 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
36646337 ATCCTGAAGT
36646347 ACCTATTCAAGAAAAACTAAAACTTTTCCTAAGTACCA
1 ACCTATTCAAGAAAAACTAAAACTTTTCCTAAGTACCA
36646385 ACCTATTCAAGAAAAACTAAAACTTTTCCTAAGTACCA
1 ACCTATTCAAGAAAAACTAAAACTTTTCCTAAGTACCA
36646423 A
1 A
36646424 AAGTCAAGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.45, C:0.23, G:0.05, T:0.26
Consensus pattern (38 bp):
ACCTATTCAAGAAAAACTAAAACTTTTCCTAAGTACCA
Found at i:36659486 original size:25 final size:26
Alignment explanation
Indices: 36659451--36659499 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
36659441 TTTATTTAAA
*
36659451 AAATAGTTTG-TAAAATCTATAATTAT
1 AAATAGTTTGTTAAAA-ATATAATTAT
36659477 AAAT-GTTTGTTAAAAATATAATT
1 AAATAGTTTGTTAAAAATATAATT
36659500 TAACCTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (26 bp):
AAATAGTTTGTTAAAAATATAATTAT
Found at i:36664908 original size:24 final size:25
Alignment explanation
Indices: 36664863--36664911 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
36664853 TATTATGGAT
* * *
36664863 AATAATTATAAGATAATCCCAAACA
1 AATAATTATAAAAAAATACCAAACA
36664888 AATAA-TATAAAAAAATACCAAACA
1 AATAATTATAAAAAAATACCAAACA
36664912 TAAATAGAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.63, C:0.14, G:0.02, T:0.20
Consensus pattern (25 bp):
AATAATTATAAAAAAATACCAAACA
Found at i:36667802 original size:17 final size:17
Alignment explanation
Indices: 36667780--36667813 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
36667770 ATTAATTGAC
36667780 AGAATTAATAATAATAA
1 AGAATTAATAATAATAA
36667797 AGAATTAATAATAATAA
1 AGAATTAATAATAATAA
36667814 TAAAACTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (17 bp):
AGAATTAATAATAATAA
Found at i:36670436 original size:14 final size:14
Alignment explanation
Indices: 36670419--36670447 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
36670409 TTGTTCGGTT
36670419 GAGAAGGATGTTTG
1 GAGAAGGATGTTTG
36670433 GAGAAGGATGTTTG
1 GAGAAGGATGTTTG
36670447 G
1 G
36670448 TACCAAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.45, T:0.28
Consensus pattern (14 bp):
GAGAAGGATGTTTG
Found at i:36679759 original size:57 final size:56
Alignment explanation
Indices: 36679687--36679805 Score: 152
Period size: 57 Copynumber: 2.1 Consensus size: 56
36679677 TCTTTTTCAC
36679687 TTTTCATTTTCATTTTGGAAAAACCACAT-CCATTTCCAAATGATTT-CATTTCTCCA
1 TTTTCATTTTCATTTTGGAAAAACC-CATACCATTTCCAAATG-TTTCCATTTCTCCA
* * *
36679743 TTTTCATTTTTCATTTTGGAGAAACCCATAATCGTTTCCAAATGTTTCCCATTTCTCCA
1 TTTTCA-TTTTCATTTTGGAAAAACCCAT-ACCATTTCCAAATGTTT-CCATTTCTCCA
36679802 TTTT
1 TTTT
36679806 TCACCATTTC
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
56 9 0.16
57 21 0.38
58 11 0.20
59 14 0.25
ACGTcount: A:0.25, C:0.23, G:0.07, T:0.45
Consensus pattern (56 bp):
TTTTCATTTTCATTTTGGAAAAACCCATACCATTTCCAAATGTTTCCATTTCTCCA
Found at i:36682311 original size:43 final size:43
Alignment explanation
Indices: 36682250--36682358 Score: 141
Period size: 43 Copynumber: 2.5 Consensus size: 43
36682240 TAAAGATAGA
* *
36682250 ATTTAGCCTGGACTGGTAATTCTGATCT-TACGTT-GAAATCGGG
1 ATTTAGCCTGGACTGGTAATCCTGAT-TATACGTTAGAAAT-GAG
* * *
36682293 ATTTAGCCTGGATTGGTAATCCTGATTATATGTTAGAGATGAG
1 ATTTAGCCTGGACTGGTAATCCTGATTATACGTTAGAAATGAG
36682336 ATTTAGCCTGGACTGGTAATCCT
1 ATTTAGCCTGGACTGGTAATCCT
36682359 TATCTCACTG
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 1 0.02
43 53 0.91
44 4 0.07
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.36
Consensus pattern (43 bp):
ATTTAGCCTGGACTGGTAATCCTGATTATACGTTAGAAATGAG
Found at i:36700746 original size:18 final size:18
Alignment explanation
Indices: 36700719--36700811 Score: 150
Period size: 18 Copynumber: 5.2 Consensus size: 18
36700709 TACGACCGTT
36700719 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
36700737 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
36700755 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
36700773 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
36700791 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
36700809 TAC
1 TAC
36700812 AGTAGTTGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 68 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:36708711 original size:4 final size:4
Alignment explanation
Indices: 36708702--36708749 Score: 57
Period size: 4 Copynumber: 12.8 Consensus size: 4
36708692 TATAAGCTGT
* *
36708702 TTTA TTTA -TTA -TTA TTTG TTTA TTTA TTTA TTTA TTCA TTTA -TTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
36708747 TTT
1 TTT
36708750 CTTCCACGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
3 9 0.24
4 29 0.76
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:36708832 original size:3 final size:3
Alignment explanation
Indices: 36708808--36708907 Score: 59
Period size: 3 Copynumber: 34.7 Consensus size: 3
36708798 TGTGCTTTTG
* * *
36708808 TAT T-T TAT TAT CAT TAT CAT TAT TAT TAT T-T TAT TAT GCA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * **
36708851 TAG TAT TAT GATT TAT TAT TA- TAT T-T TAT TAT GCT TAT TAT TA-
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
36708894 TAC CAT TAT TAT TA
1 TAT TAT TAT TAT TA
36708908 CAAATTGATG
Statistics
Matches: 72, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
2 11 0.15
3 58 0.81
4 3 0.04
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:36708837 original size:26 final size:26
Alignment explanation
Indices: 36708808--36708869 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
36708798 TGTGCTTTTG
*
36708808 TATTTTATTAT-CATTATCATTATTAT
1 TATTTTATTATGCA-TATCAGTATTAT
*
36708834 TATTTTATTATGCATATTAGTATTAT
1 TATTTTATTATGCATATCAGTATTAT
*
36708860 GA-TTTATTAT
1 TATTTTATTAT
36708870 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 8 0.25
26 22 0.69
27 2 0.06
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.60
Consensus pattern (26 bp):
TATTTTATTATGCATATCAGTATTAT
Found at i:36710746 original size:3 final size:3
Alignment explanation
Indices: 36710738--36710774 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
36710728 AGCACAATTT
*
36710738 ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
36710775 GCAATTTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:36711067 original size:3 final size:3
Alignment explanation
Indices: 36711059--36711091 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
36711049 ATATTAAACT
36711059 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
36711092 TTTGTCGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:36725661 original size:39 final size:39
Alignment explanation
Indices: 36725612--36725690 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
36725602 ACCCCTCATG
*
36725612 CTGCTGCTGCTGCCGCTACTTTTGCTGCCCCTATTTTCA
1 CTGCTACTGCTGCCGCTACTTTTGCTGCCCCTATTTTCA
* *
36725651 CTGCTACTGCTGCTGCTGCTTTTGCTGCCCCTATTTTCA
1 CTGCTACTGCTGCCGCTACTTTTGCTGCCCCTATTTTCA
36725690 C
1 C
36725691 CATGCATGAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.08, C:0.35, G:0.18, T:0.39
Consensus pattern (39 bp):
CTGCTACTGCTGCCGCTACTTTTGCTGCCCCTATTTTCA
Found at i:36725990 original size:16 final size:16
Alignment explanation
Indices: 36725969--36726036 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
36725959 TTTGGTTCGC
36725969 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36725985 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
36726001 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
36726017 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36726033 TGTA
1 TGTA
36726037 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:36726305 original size:17 final size:17
Alignment explanation
Indices: 36726264--36726404 Score: 61
Period size: 17 Copynumber: 8.6 Consensus size: 17
36726254 AACATAATTA
36726264 TTATT-AAATATAT--T
1 TTATTAAAATATATAAT
* *
36726278 TTTTTATAATATATAAT
1 TTATTAAAATATATAAT
36726295 TTGA-TAAAATATATGAAT
1 TT-ATTAAAATATAT-AAT
36726313 TTATTAAAAT-TATAAT
1 TTATTAAAATATATAAT
* * *
36726329 ATA-TAATATTATAAAAT
1 TTATTAA-AATATATAAT
* *
36726346 ATAATTTAAAATA-ATTA-
1 -TTA-TTAAAATATATAAT
36726363 TTATT--AA-ATATAAT
1 TTATTAAAATATATAAT
**
36726377 TTAACAAAAATATATAAT
1 TT-ATTAAAATATATAAT
*
36726395 TTAATAAAAT
1 TTATTAAAAT
36726405 TCTTAGTATT
Statistics
Matches: 92, Mismatches: 18, Indels: 31
0.65 0.13 0.22
Matches are distributed among these distances:
12 1 0.01
13 5 0.05
14 6 0.07
15 13 0.14
16 9 0.10
17 29 0.32
18 23 0.25
19 3 0.03
20 3 0.03
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (17 bp):
TTATTAAAATATATAAT
Found at i:36726332 original size:24 final size:22
Alignment explanation
Indices: 36726302--36726350 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 22
36726292 AATTTGATAA
36726302 AATATATGAAT-TTATTAAAATTAT
1 AATATAT-AATATTA-TAAAA-TAT
36726326 AATATATAATATTATAAAATAT
1 AATATATAATATTATAAAATAT
36726348 AAT
1 AAT
36726351 TTAAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.25
23 8 0.33
24 10 0.42
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATATATAATATTATAAAATAT
Found at i:36726341 original size:15 final size:15
Alignment explanation
Indices: 36726321--36726376 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
36726311 ATTTATTAAA
*
36726321 ATTATAATATATAAT
1 ATTATAAAATATAAT
36726336 ATTATAAAATAT-A-
1 ATTATAAAATATAAT
*
36726349 ATT-TAAAATA-ATT
1 ATTATAAAATATAAT
*
36726362 ATTATTAAATATAAT
1 ATTATAAAATATAAT
36726377 TTAACAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 7 0.21
15 13 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATAAAATATAAT
Found at i:36726343 original size:41 final size:39
Alignment explanation
Indices: 36726281--36726468 Score: 115
Period size: 41 Copynumber: 4.7 Consensus size: 39
36726271 ATATATTTTT
36726281 TTATAATATATAAT-TTGATAAAATATATGAATTTATTAAAA
1 TTATAATATATAATATT-ATAAAATATAT-AATTTA-TAAAA
*
36726322 TTATAATATATAATATTAT-AAA-ATATAATTTAAAATAA
1 TTATAATATATAATATTATAAAATATATAATTTATAA-AA
* *
36726360 TTATTATTAAATATAAT-TTAACAAAAATATATAATTTAATAAAA
1 TTA-TA--ATATATAATATT-A-TAAAATATATAATTT-ATAAAA
* * *
36726404 TTCTTAGTAT-TAAATATTCT----TATATGAATTTACTAAAA
1 TT-ATAATATAT-AATATTATAAAATATAT-AATTTA-TAAAA
* *
36726442 TCATAATATATAATACTATAAAATATA
1 TTATAATATATAATATTATAAAATATA
36726469 ATCTAAAATA
Statistics
Matches: 113, Mismatches: 14, Indels: 40
0.68 0.08 0.24
Matches are distributed among these distances:
37 19 0.17
38 23 0.20
39 6 0.05
40 5 0.04
41 30 0.27
42 7 0.06
43 5 0.04
44 15 0.13
45 3 0.03
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (39 bp):
TTATAATATATAATATTATAAAATATATAATTTATAAAA
Found at i:36726371 original size:26 final size:25
Alignment explanation
Indices: 36726331--36726393 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
36726321 ATTATAATAT
36726331 ATAATATTATAAAATATAATTTAAA
1 ATAATATTATAAAATATAATTTAAA
*
36726356 ATAATTATTATTAAATATAATTTAACA
1 ATAA-TATTATAAAATATAATTTAA-A
*
36726383 AAAATA-TATAA
1 ATAATATTATAA
36726394 TTTAATAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 8 0.24
26 21 0.64
27 4 0.12
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAATATTATAAAATATAATTTAAA
Found at i:36727982 original size:13 final size:13
Alignment explanation
Indices: 36727966--36727995 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
36727956 TAGACCAAGC
36727966 TTTTCAAAAGCAT
1 TTTTCAAAAGCAT
*
36727979 TTTTCATAAGCAT
1 TTTTCAAAAGCAT
36727992 TTTT
1 TTTT
36727996 TTGCAGCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.07, T:0.50
Consensus pattern (13 bp):
TTTTCAAAAGCAT
Found at i:36731645 original size:16 final size:18
Alignment explanation
Indices: 36731609--36731645 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
36731599 TAGTGTTTTG
*
36731609 TATTTTGTTATAGTTATT
1 TATTTTGTTATAGTAATT
36731627 TATTTTGTTA-A-TAATT
1 TATTTTGTTATAGTAATT
36731643 TAT
1 TAT
36731646 GGGATTAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 1 0.06
18 10 0.56
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (18 bp):
TATTTTGTTATAGTAATT
Found at i:36731812 original size:107 final size:107
Alignment explanation
Indices: 36731626--36732191 Score: 692
Period size: 107 Copynumber: 5.3 Consensus size: 107
36731616 TTATAGTTAT
* *
36731626 TTATTTTGTTAATAATTTATGGGATTAGG-T-TACAAATTGTTAGTGTTTAGTTGTTTAAG-GTA
1 TTATTTTGTTAGTAATTTAT--GATTAGGTTATAAAAATTGTTAGTGTTTAGTTGTTT-AGTGTA
*
36731688 TTGTGATTTTTAGGAATGTAATTTTTAAAAAAAATAATTTTATAG
63 TTGTGATTTTTAGTAATGTAATTTTTAAAAAAAATAATTTTATAG
36731733 TTATTTTGTTAGTAATTTATGATTAGGTTATAAAAATTGTTAGTGTTTAGTTGTTTAAG-GTATT
1 TTATTTTGTTAGTAATTTATGATTAGGTTATAAAAATTGTTAGTGTTTAGTTGTTT-AGTGTATT
*
36731797 GTGATTTTTAGGAATGTAATTTTTAAAAAAAATAATTTTATAG
65 GTGATTTTTAGTAATGTAATTTTTAAAAAAAATAATTTTATAG
*
36731840 TTATTTTGTTAGTAATTTATGATTAGGTTATAAAAATTGTTAGTGTTTAGTGGTTTAGTGTATTA
1 TTATTTTGTTAGTAATTTATGATTAGGTTATAAAAATTGTTAGTGTTTAGTTGTTTAGTGTATT-
* * ** * *
36731905 GTGTATTGTGAGTTTTTTAAATAATATATT-TAAAAAATAATTTTATAG
65 GTG-ATTTTTAGTAATGT-AAT--T-T-TTAAAAAAAATAATTTTATAG
* * *** * * *
36731953 CTATTTTATTAGTAATTTATGATTAGGTTACGTAAATTGCTAGTGTTTAGTGGTTTAGTGTATTA
1 TTATTTTGTTAGTAATTTATGATTAGGTTATAAAAATTGTTAGTGTTTAGTTGTTTAGTGTATTG
36732018 TGATTTTTTAGTAATGT-A-TTTTAAAAAAAATAATTTTATAG
66 TGA-TTTTTAGTAATGTAATTTTTAAAAAAAATAATTTTATAG
* * *
36732059 TTATTTTGTTAGTAATTTATGATTAGGTTA-ACATAAATTGCTAGTGTTTAGTGGTTCAGTGTAT
1 TTATTTTGTTAGTAATTTATGATTAGGTTATA-A-AAATTGTTAGTGTTTAGTTGTTTAGTGTAT
*
36732123 TATGATTTTTTAGTAATGT-A-TTTT-AAAAAAA-AA--TTATAG
64 TGTGA-TTTTTAGTAATGTAATTTTTAAAAAAAATAATTTTATAG
36732162 TTATTTTGTTAGTAATTTATGATTAGGTTA
1 TTATTTTGTTAGTAATTTATGATTAGGTTA
36732192 CATAAATTCT
Statistics
Matches: 417, Mismatches: 28, Indels: 32
0.87 0.06 0.07
Matches are distributed among these distances:
103 36 0.09
105 11 0.03
106 56 0.13
107 209 0.50
108 3 0.01
109 8 0.02
110 4 0.01
111 1 0.00
112 11 0.03
113 76 0.18
114 2 0.00
ACGTcount: A:0.33, C:0.01, G:0.17, T:0.49
Consensus pattern (107 bp):
TTATTTTGTTAGTAATTTATGATTAGGTTATAAAAATTGTTAGTGTTTAGTTGTTTAGTGTATTG
TGATTTTTAGTAATGTAATTTTTAAAAAAAATAATTTTATAG
Found at i:36732002 original size:220 final size:211
Alignment explanation
Indices: 36731626--36732199 Score: 693
Period size: 220 Copynumber: 2.7 Consensus size: 211
36731616 TTATAGTTAT
* * * *
36731626 TTATTTTGTTAATAATTTATGGGATTAGGTT-AC--AAATTGTTAGTGTTTAGTTGTTTAAG-GT
1 TTATTTTGTTAGTAATTTAT--GATTAGGTTAACATAAATTGCTAGTGTTTAG-TGGTTCAGTGT
* * *
36731687 ATTGTGA-TTTTTAGGAATGTAATTTTTAAAAAAAATAATTTTATAGTTATTTTGTTAGTAATTT
63 ATTATGATTTTTTAGTAATAT-A-TTTT--AAAAAATAATTTTATAGTTATTTTGTTAGTAATTT
* * * * *
36731751 ATGATTAGGTTATAAAAATTGTTAGTGTTTAGTTGTTTAAG-GTATTGTGA-TTTTTAGGAATGT
124 ATGATTAGGTTACATAAATTGCTAGTGTTTAGTGGTTT-AGTGTATTATGATTTTTTAGGAATGT
36731814 AATTTTTAAAAAAAATAATTTTATAG
188 -A-TTTTAAAAAAAATAATTTTATAG
* *
36731840 TTATTTTGTTAGTAATTTATGATTAGGTTATA-A-AAATTGTTAGTGTTTAGTGGTTTAGTGTAT
1 TTATTTTGTTAGTAATTTATGATTAGGTTA-ACATAAATTGCTAGTGTTTAGTGGTTCAGTGTAT
** * *
36731903 TAGTGTATTGTGAGTTTTTTAAATAATATATTTAAAAAATAATTTTATAGCTATTTTATTAGTAA
65 TA-TG-ATT-T---TTTAGT-AAT-ATAT-TTTAAAAAATAATTTTATAGTTATTTTGTTAGTAA
* *
36731968 TTTATGATTAGGTTACGTAAATTGCTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTAGTAAT
121 TTTATGATTAGGTTACATAAATTGCTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTAGGAAT
36732033 GTATTTTAAAAAAAATAATTTTATAG
186 GTATTTTAAAAAAAATAATTTTATAG
36732059 TTATTTTGTTAGTAATTTATGATTAGGTTAACATAAATTGCTAGTGTTTAGTGGTTCAGTGTATT
1 TTATTTTGTTAGTAATTTATGATTAGGTTAACATAAATTGCTAGTGTTTAGTGGTTCAGTGTATT
* *
36732124 ATGATTTTTTAGTAATGTATTTTAAAAAA-AA-ATTATAGTTATTTTGTTAGTAATTTATGATTA
66 ATGATTTTTTAGTAATATATTTTAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTATGATTA
36732187 GGTTACATAAATT
131 GGTTACATAAATT
36732200 CTTAGGGCAC
Statistics
Matches: 316, Mismatches: 26, Indels: 41
0.83 0.07 0.11
Matches are distributed among these distances:
209 41 0.13
210 2 0.01
211 9 0.03
212 12 0.04
213 9 0.03
214 46 0.15
215 2 0.01
216 1 0.00
217 2 0.01
218 5 0.02
219 58 0.18
220 105 0.33
221 16 0.05
222 7 0.02
223 1 0.00
ACGTcount: A:0.33, C:0.01, G:0.17, T:0.49
Consensus pattern (211 bp):
TTATTTTGTTAGTAATTTATGATTAGGTTAACATAAATTGCTAGTGTTTAGTGGTTCAGTGTATT
ATGATTTTTTAGTAATATATTTTAAAAAATAATTTTATAGTTATTTTGTTAGTAATTTATGATTA
GGTTACATAAATTGCTAGTGTTTAGTGGTTTAGTGTATTATGATTTTTTAGGAATGTATTTTAAA
AAAAATAATTTTATAG
Found at i:36732242 original size:16 final size:16
Alignment explanation
Indices: 36732221--36732288 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
36732211 TTTGGTTCGC
36732221 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36732237 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
36732253 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
36732269 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
36732285 TGTA
1 TGTA
36732289 ATAGCAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:36732556 original size:17 final size:17
Alignment explanation
Indices: 36732516--36732725 Score: 63
Period size: 17 Copynumber: 12.6 Consensus size: 17
36732506 AACATAATTA
36732516 TTATT-AAATATAT--T
1 TTATTAAAATATATAAT
*
36732530 TT-TTATAATATATAAT
1 TTATTAAAATATATAAT
36732546 TTGA-TAAAATATATGAAT
1 TT-ATTAAAATATAT-AAT
36732564 TTATTAAAAT-TATAAT
1 TTATTAAAATATATAAT
* * *
36732580 ATA-TAATATTATAAAAT
1 TTATTAA-AATATATAAT
* *
36732597 ATAATTTAAAATA-ATTA-
1 -TTA-TTAAAATATATAAT
36732614 TTATT--AA-ATATAAT
1 TTATTAAAATATATAAT
**
36732628 TTAACAAAAATATATAAT
1 TT-ATTAAAATATATAAT
* *
36732646 TTACTAAAAT-CATAAT
1 TTATTAAAATATATAAT
* * *
36732662 ATA-TAATACTATAAAATT
1 TTATTAA-AATATATAA-T
*
36732680 ATTATTATTAA-ATATAAT
1 -TTATTA-AAATATATAAT
**
36732698 TTAACAAAAATATATAAT
1 TT-ATTAAAATATATAAT
*
36732716 TTAATAAAAT
1 TTATTAAAAT
36732726 TAAATATTCT
Statistics
Matches: 141, Mismatches: 29, Indels: 49
0.64 0.13 0.22
Matches are distributed among these distances:
12 1 0.01
13 7 0.05
14 11 0.08
15 9 0.06
16 21 0.15
17 40 0.28
18 36 0.26
19 10 0.07
20 6 0.04
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.43
Consensus pattern (17 bp):
TTATTAAAATATATAAT
Found at i:36732583 original size:24 final size:22
Alignment explanation
Indices: 36732553--36732601 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 22
36732543 AATTTGATAA
36732553 AATATATGAAT-TTATTAAAATTAT
1 AATATAT-AATATTA-TAAAA-TAT
36732577 AATATATAATATTATAAAATAT
1 AATATATAATATTATAAAATAT
36732599 AAT
1 AAT
36732602 TTAAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.25
23 8 0.33
24 10 0.42
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATATATAATATTATAAAATAT
Found at i:36732594 original size:41 final size:39
Alignment explanation
Indices: 36732532--36732668 Score: 127
Period size: 41 Copynumber: 3.4 Consensus size: 39
36732522 AATATATTTT
*
36732532 TTATAATATATAATTTGATAAAATATATGAATTTATTAAAA
1 TTATAATATATAATTTAATAAAATATAT-AATTTA-TAAAA
*
36732573 TTATAATATATAATATT-AT-AAA-ATATAATTTAAAATAA
1 TTATAATATATAAT-TTAATAAAATATATAATTTATAA-AA
* *
36732611 TTATTATTAAATATAATTTAACAAAAATATATAATTTACTAAAA
1 TTA-TA--ATATATAATTTAA-TAAAATATATAATTTA-TAAAA
*
36732655 TCATAATATATAAT
1 TTATAATATATAAT
36732669 ACTATAAAAT
Statistics
Matches: 80, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
37 2 0.03
38 11 0.14
39 6 0.08
40 5 0.06
41 33 0.41
42 2 0.03
43 5 0.06
44 14 0.17
45 2 0.03
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (39 bp):
TTATAATATATAATTTAATAAAATATATAATTTATAAAA
Found at i:36732622 original size:26 final size:25
Alignment explanation
Indices: 36732582--36732644 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
36732572 ATTATAATAT
36732582 ATAATATTATAAAATATAATTTAAA
1 ATAATATTATAAAATATAATTTAAA
*
36732607 ATAATTATTATTAAATATAATTTAACA
1 ATAA-TATTATAAAATATAATTTAA-A
*
36732634 AAAATA-TATAA
1 ATAATATTATAA
36732645 TTTACTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 8 0.24
26 21 0.64
27 4 0.12
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAATATTATAAAATATAATTTAAA
Found at i:36735077 original size:21 final size:21
Alignment explanation
Indices: 36735048--36735094 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
36735038 CAGCTTCTTT
*
36735048 GCAGTGATGACAAACTGTTCC
1 GCAGCGATGACAAACTGTTCC
*
36735069 GCAGCGATGACAAACTGTTCT
1 GCAGCGATGACAAACTGTTCC
36735090 GCAGC
1 GCAGC
36735095 CTTTAAGATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.21
Consensus pattern (21 bp):
GCAGCGATGACAAACTGTTCC
Found at i:36736635 original size:42 final size:38
Alignment explanation
Indices: 36736542--36736654 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 38
36736532 GCAAACAACA
* *
36736542 CTATCAACAAACAACAGT-ATGCATTTCTTAAGCCTAAC
1 CTATCAACAAACAACAGTCAT-CAATTCTTAAGCCAAAC
* *
36736580 C-AACAACAGACAACAGTCATCAATTCTTAAGCCAAGGCAC
1 CTATCAACAAACAACAGTCATCAATTCTTAAGCCAA---AC
*
36736620 CTTATCAACAAACAACAATCATCAATTCTTAAGCC
1 C-TATCAACAAACAACAGTCATCAATTCTTAAGCC
36736655 TAATCCAAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
37 27 0.44
38 3 0.05
40 3 0.05
42 29 0.47
ACGTcount: A:0.42, C:0.28, G:0.08, T:0.22
Consensus pattern (38 bp):
CTATCAACAAACAACAGTCATCAATTCTTAAGCCAAAC
Found at i:36737041 original size:38 final size:38
Alignment explanation
Indices: 36736999--36737139 Score: 131
Period size: 38 Copynumber: 4.0 Consensus size: 38
36736989 GCAGAAACTG
36736999 GCAAATCGGCAGAAAAGAAAAGAAAAGAAACAAAGGGA
1 GCAAATCGGCAGAAAAGAAAAGAAAAGAAACAAAGGGA
* *
36737037 GCAAATCGACAGAAAAGAAAAGAAAATAAAC--A--GA
1 GCAAATCGGCAGAAAAGAAAAGAAAAGAAACAAAGGGA
* *
36737071 G------GGCAGAAAGGAAAAGAAAAGAAACGAAGGGA
1 GCAAATCGGCAGAAAAGAAAAGAAAAGAAACAAAGGGA
* * * * *
36737103 GCAAATTGGAAGAAAAGAACAGAAAATAAACAGAGGG
1 GCAAATCGGCAGAAAAGAAAAGAAAAGAAACAAAGGG
36737140 CAGAAAAGAA
Statistics
Matches: 82, Mismatches: 11, Indels: 20
0.73 0.10 0.18
Matches are distributed among these distances:
28 21 0.26
30 1 0.01
32 3 0.04
34 3 0.04
36 1 0.01
38 53 0.65
ACGTcount: A:0.60, C:0.09, G:0.27, T:0.04
Consensus pattern (38 bp):
GCAAATCGGCAGAAAAGAAAAGAAAAGAAACAAAGGGA
Found at i:36737086 original size:66 final size:66
Alignment explanation
Indices: 36737006--36737155 Score: 248
Period size: 66 Copynumber: 2.3 Consensus size: 66
36736996 CTGGCAAATC
36737006 GGCAGAAAAGAAAAGAAAAGAAACAAAGGGAGCAAA-TCGACAGAAAAGAAAAGAAAATAAACAG
1 GGCAGAAAAGAAAAGAAAAGAAACAAAGGGAGCAAATTCGA-AGAAAAGAAAAGAAAATAAACAG
36737070 AG
65 AG
* * * *
36737072 GGCAGAAAGGAAAAGAAAAGAAACGAAGGGAGCAAATTGGAAGAAAAGAACAGAAAATAAACAGA
1 GGCAGAAAAGAAAAGAAAAGAAACAAAGGGAGCAAATTCGAAGAAAAGAAAAGAAAATAAACAGA
36737137 G
66 G
36737138 GGCAGAAAAGAAAAGAAA
1 GGCAGAAAAGAAAAGAAA
36737156 CGGAGGGAGC
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
66 75 0.96
67 3 0.04
ACGTcount: A:0.62, C:0.08, G:0.27, T:0.03
Consensus pattern (66 bp):
GGCAGAAAAGAAAAGAAAAGAAACAAAGGGAGCAAATTCGAAGAAAAGAAAAGAAAATAAACAGA
G
Found at i:36737144 original size:23 final size:23
Alignment explanation
Indices: 36737118--36737162 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
36737108 TTGGAAGAAA
* *
36737118 AGAACAGAAAATAAACAGAGGGC
1 AGAAAAGAAAAGAAACAGAGGGC
*
36737141 AGAAAAGAAAAGAAACGGAGGG
1 AGAAAAGAAAAGAAACAGAGGG
36737163 AGCAAATCGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.58, C:0.09, G:0.31, T:0.02
Consensus pattern (23 bp):
AGAAAAGAAAAGAAACAGAGGGC
Found at i:36737705 original size:15 final size:16
Alignment explanation
Indices: 36737678--36737709 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
36737668 GTGATTTTTT
36737678 TAATGTAATTTTTATA
1 TAATGTAATTTTTATA
36737694 TAATGTAA-TTTTATA
1 TAATGTAATTTTTATA
36737709 T
1 T
36737710 TATTATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TAATGTAATTTTTATA
Found at i:36737715 original size:23 final size:23
Alignment explanation
Indices: 36737689--36737738 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
36737679 AATGTAATTT
36737689 TTATATAATGTAATTTTATATTA
1 TTATATAATGTAATTTTATATTA
* * *
36737712 TTATTTATTTTAATTTTATATTA
1 TTATATAATGTAATTTTATATTA
36737735 TTAT
1 TTAT
36737739 TTATTTATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (23 bp):
TTATATAATGTAATTTTATATTA
Found at i:36737717 original size:13 final size:13
Alignment explanation
Indices: 36737687--36737740 Score: 51
Period size: 15 Copynumber: 4.2 Consensus size: 13
36737677 TTAATGTAAT
*
36737687 TTTTATATAATGTAA
1 TTTTATATTAT-T-A
36737702 TTTTATATTATTA
1 TTTTATATTATTA
*
36737715 -TTTAT-TT-TAA
1 TTTTATATTATTA
36737725 TTTTATATTATTA
1 TTTTATATTATTA
36737738 TTT
1 TTT
36737741 ATTTATTTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
10 2 0.06
11 7 0.21
12 7 0.21
13 6 0.18
14 1 0.03
15 10 0.30
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (13 bp):
TTTTATATTATTA
Found at i:36737739 original size:23 final size:23
Alignment explanation
Indices: 36737699--36737744 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
36737689 TTATATAATG
36737699 TAATTTTATATTATTATTTATTT
1 TAATTTTATATTATTATTTATTT
36737722 TAATTTTATATTATTATTTATTT
1 TAATTTTATATTATTATTTATTT
36737745 ATTTGATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (23 bp):
TAATTTTATATTATTATTTATTT
Found at i:36737746 original size:11 final size:12
Alignment explanation
Indices: 36737703--36737747 Score: 58
Period size: 11 Copynumber: 3.9 Consensus size: 12
36737693 ATAATGTAAT
36737703 TTTATATTATTA
1 TTTATATTATTA
* *
36737715 TTTATTTTAAT-
1 TTTATATTATTA
36737726 TTTATATTATTA
1 TTTATATTATTA
36737738 TTTAT-TTATT
1 TTTATATTATT
36737748 TGATAATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
11 14 0.50
12 14 0.50
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:36737759 original size:30 final size:26
Alignment explanation
Indices: 36737707--36737762 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
36737697 TGTAATTTTA
36737707 TATTATTATTTATTTTAATTTTATAT
1 TATTATTATTTATTTTAATTTTATAT
36737733 TATTATTTATTTATTTGATAATTTT-TAT
1 TATTA-TTATTTATTT--TAATTTTATAT
36737761 TA
1 TA
36737763 ATTTATTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
26 5 0.19
27 10 0.37
28 5 0.19
29 7 0.26
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (26 bp):
TATTATTATTTATTTTAATTTTATAT
Found at i:36740105 original size:30 final size:30
Alignment explanation
Indices: 36740069--36740130 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
36740059 ACCATCAATT
36740069 TTAGAGGGTTTTGTAATGTAAATAACTTCA
1 TTAGAGGGTTTTGTAATGTAAATAACTTCA
36740099 TTAGAGGGTTTTGTAATGTAAATAACTTCA
1 TTAGAGGGTTTTGTAATGTAAATAACTTCA
36740129 TT
1 TT
36740131 TTTATGTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.19, T:0.42
Consensus pattern (30 bp):
TTAGAGGGTTTTGTAATGTAAATAACTTCA
Found at i:36745183 original size:23 final size:23
Alignment explanation
Indices: 36745157--36745201 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
36745147 TATATACTAA
*
36745157 ATATATATTTTTTATTTTTAATC
1 ATATATATATTTTATTTTTAATC
*
36745180 ATATTTATATTTTATTTTTAAT
1 ATATATATATTTTATTTTTAAT
36745202 TTTAATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (23 bp):
ATATATATATTTTATTTTTAATC
Found at i:36745285 original size:28 final size:29
Alignment explanation
Indices: 36745253--36745328 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 29
36745243 TGTTTTAAGA
*
36745253 ATTGTTTTAATATATTTTTT-ATTTATTT
1 ATTGTTTTAATATATTTTTTAATGTATTT
*
36745281 CTTGTTTTAATAT-TTATTTTAAATGTATTT
1 ATTGTTTTAATATATT-TTTT-AATGTATTT
* *
36745311 AATGATTTAATATATTTT
1 ATTGTTTTAATATATTTT
36745329 AAATTTTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
27 2 0.05
28 16 0.41
30 19 0.49
31 2 0.05
ACGTcount: A:0.29, C:0.01, G:0.05, T:0.64
Consensus pattern (29 bp):
ATTGTTTTAATATATTTTTTAATGTATTT
Found at i:36745339 original size:28 final size:28
Alignment explanation
Indices: 36745258--36745339 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 28
36745248 TAAGAATTGT
** ** *
36745258 TTTAATATATTTTTTATTTATTTCTTGT
1 TTTAATATATTTTAAATTTATTTAATGA
*
36745286 TTTAATATTTATTTTAAATGTATTTAATGA
1 TTTAATA--TATTTTAAATTTATTTAATGA
*
36745316 TTTAATATATTTTAAATTTTTTTA
1 TTTAATATATTTTAAATTTATTTA
36745340 TTTAATGAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
28 22 0.50
30 22 0.50
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.65
Consensus pattern (28 bp):
TTTAATATATTTTAAATTTATTTAATGA
Found at i:36745790 original size:36 final size:37
Alignment explanation
Indices: 36745750--36745844 Score: 88
Period size: 36 Copynumber: 2.6 Consensus size: 37
36745740 TTGAGTGACT
36745750 TTTTAAAAATTTTAAATTA-ATAAAATTAAAATT-ATA
1 TTTTAAAAATTTTAAATTATA-AAAATTAAAATTAATA
** * * *
36745786 TTTT-AACCTCTTAAAATTATAAAAATTTAATTTAATA
1 TTTTAAAAAT-TTTAAATTATAAAAATTAAAATTAATA
*
36745823 TTTTAAAAATTATAAATATATA
1 TTTTAAAAATTTTAAAT-TATA
36745845 TACTATAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 8
0.73 0.15 0.13
Matches are distributed among these distances:
35 3 0.07
36 22 0.49
37 13 0.29
38 7 0.16
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (37 bp):
TTTTAAAAATTTTAAATTATAAAAATTAAAATTAATA
Found at i:36745819 original size:29 final size:31
Alignment explanation
Indices: 36745777--36745838 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 31
36745767 TAATAAAATT
* *
36745777 AAAATTATATTTTAACCTCTT-AAAATTATA
1 AAAATTATAATTTAACATCTTAAAAATTATA
* *
36745807 AAAATT-TAATTTAATATTTTAAAAATTATA
1 AAAATTATAATTTAACATCTTAAAAATTATA
36745837 AA
1 AA
36745839 TATATATACT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (31 bp):
AAAATTATAATTTAACATCTTAAAAATTATA
Found at i:36745922 original size:19 final size:19
Alignment explanation
Indices: 36745881--36745921 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
36745871 GTACTCCTAC
36745881 AAAATAGATATTAATATAA
1 AAAATAGATATTAATATAA
*
36745900 AAAATGGATA-TAATATAA
1 AAAATAGATATTAATATAA
36745918 AAAA
1 AAAA
36745922 AAGTTGGGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (19 bp):
AAAATAGATATTAATATAA
Found at i:36748832 original size:13 final size:13
Alignment explanation
Indices: 36748814--36748839 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36748804 GGGGGGGGGG
36748814 TTCATCTACTTCC
1 TTCATCTACTTCC
36748827 TTCATCTACTTCC
1 TTCATCTACTTCC
36748840 CTATATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.00, T:0.46
Consensus pattern (13 bp):
TTCATCTACTTCC
Found at i:36749065 original size:25 final size:25
Alignment explanation
Indices: 36749031--36749082 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
36749021 TAGGAGAATA
36749031 TGTCTGACTTCAAAAATAATGTAGT
1 TGTCTGACTTCAAAAATAATGTAGT
36749056 TGTCTGACTTCAAAAATAATGTAGT
1 TGTCTGACTTCAAAAATAATGTAGT
36749081 TG
1 TG
36749083 CTTGTGGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.37
Consensus pattern (25 bp):
TGTCTGACTTCAAAAATAATGTAGT
Found at i:36780322 original size:28 final size:29
Alignment explanation
Indices: 36780265--36780322 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
36780255 TCACTCAAAC
*
36780265 ATCGAGAAATCTTAAGTTAAAATTCGGTG
1 ATCGAGAAATCTTAAGTTAAAATTCAGTG
36780294 ATCGAGAAATCTTAA-TTAAAATTCAGTG
1 ATCGAGAAATCTTAAGTTAAAATTCAGTG
36780322 A
1 A
36780323 AAATAACGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 13 0.46
29 15 0.54
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.31
Consensus pattern (29 bp):
ATCGAGAAATCTTAAGTTAAAATTCAGTG
Found at i:36781510 original size:5 final size:5
Alignment explanation
Indices: 36781500--36781525 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
36781490 TAAATAAATC
36781500 TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT T
36781526 GCAAATTTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:36785066 original size:21 final size:21
Alignment explanation
Indices: 36785040--36785080 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
36785030 AGACGAGCAA
* *
36785040 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
36785061 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
36785081 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:36790861 original size:30 final size:30
Alignment explanation
Indices: 36790825--36790882 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
36790815 TATTTACAAA
*
36790825 TATTATTATAGTAAATATTTAAATATTTTT
1 TATTATTATAATAAATATTTAAATATTTTT
* * *
36790855 TATTATTTTAATTAATTTTTAAATATTT
1 TATTATTATAATAAATATTTAAATATTT
36790883 CATGTATCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (30 bp):
TATTATTATAATAAATATTTAAATATTTTT
Found at i:36794239 original size:48 final size:48
Alignment explanation
Indices: 36794158--36794321 Score: 220
Period size: 48 Copynumber: 3.4 Consensus size: 48
36794148 TGACAACATG
* * * * *
36794158 TGATTTGTGGTTTCCGTATAAGATTATATCTGGGATATGGCATCGGTA
1 TGATATGTGATTTCCGTATAAGATCATAGCTGGGCTATGGCATCGGTA
*
36794206 TGATATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTA
1 TGATATGTGATTTCCGTATAAGATCATAGCTGGGCTATGGCATCGGTA
* * * *
36794254 TGATATGTAATTTCCGTATAAGATCATAGTTGGGCTATGGCATTGGTG
1 TGATATGTGATTTCCGTATAAGATCATAGCTGGGCTATGGCATCGGTA
* *
36794302 TGATACGTGATTCCCGTATA
1 TGATATGTGATTTCCGTATA
36794322 GATGATGGAT
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.36
Consensus pattern (48 bp):
TGATATGTGATTTCCGTATAAGATCATAGCTGGGCTATGGCATCGGTA
Found at i:36794536 original size:22 final size:22
Alignment explanation
Indices: 36794496--36794539 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
36794486 AATGGTAAAA
* * *
36794496 AATGCTATTTTTTTGTTGTTTT
1 AATGCTATTCTCTTATTGTTTT
36794518 AATGCTATTCTCTTATTGTTTT
1 AATGCTATTCTCTTATTGTTTT
36794540 CTCCCTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.09, G:0.11, T:0.64
Consensus pattern (22 bp):
AATGCTATTCTCTTATTGTTTT
Found at i:36797115 original size:21 final size:21
Alignment explanation
Indices: 36797090--36797130 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36797080 ATTAGTTGAG
36797090 AAATTT-ACACATTAAATGTGT
1 AAATTTAACACATT-AATGTGT
*
36797111 AAATTTAACAGATTAATGTG
1 AAATTTAACACATTAATGTG
36797131 ATCATAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (21 bp):
AAATTTAACACATTAATGTGT
Found at i:36800111 original size:23 final size:23
Alignment explanation
Indices: 36800062--36800111 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
36800052 CAAAGAAAAC
* *
36800062 AATATGAATATACAAATATATAT
1 AATATGAATATAAAAATATATAA
36800085 AATATGAATA-AAAAATATAATAA
1 AATATGAATATAAAAATAT-ATAA
36800108 AATA
1 AATA
36800112 AATACATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 7 0.29
23 17 0.71
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (23 bp):
AATATGAATATAAAAATATATAA
Found at i:36800115 original size:21 final size:22
Alignment explanation
Indices: 36800075--36800115 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
36800065 ATGAATATAC
* *
36800075 AAATATATATAATATGAATAAA
1 AAATATATATAAAATAAATAAA
36800097 AAATATA-ATAAAATAAATA
1 AAATATATATAAAATAAATA
36800116 CATGATTATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (22 bp):
AAATATATATAAAATAAATAAA
Found at i:36802414 original size:20 final size:21
Alignment explanation
Indices: 36802377--36802417 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
36802367 ATCCAAACAC
36802377 AAAAAAAAATTAACTTTTTCA
1 AAAAAAAAATTAACTTTTTCA
36802398 AAAAAATAAATT-A-TTTTTCA
1 AAAAAA-AAATTAACTTTTTCA
36802418 GAAATTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
21 7 0.37
22 5 0.26
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (21 bp):
AAAAAAAAATTAACTTTTTCA
Found at i:36803905 original size:12 final size:12
Alignment explanation
Indices: 36803888--36803952 Score: 64
Period size: 12 Copynumber: 5.5 Consensus size: 12
36803878 GCGTAAGCCA
36803888 TTATAATAATTT
1 TTATAATAATTT
*
36803900 TTATAATAATAT
1 TTATAATAATTT
* *
36803912 ATATAAT-TTTT
1 TTATAATAATTT
36803923 TTATAAT--TTT
1 TTATAATAATTT
36803933 TTATAATATTATTT
1 TTATAATA--ATTT
36803947 TTATAA
1 TTATAA
36803953 ATGTACTAGC
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
10 10 0.23
11 8 0.18
12 17 0.39
14 9 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTATAATAATTT
Found at i:36803947 original size:24 final size:24
Alignment explanation
Indices: 36803888--36803952 Score: 66
Period size: 23 Copynumber: 2.8 Consensus size: 24
36803878 GCGTAAGCCA
36803888 TTATAATA--ATTTTTATAATAAT
1 TTATAATATTATTTTTATAATAAT
* **
36803910 ATAT-ATAATT-TTTTTATAATTTT
1 TTATAAT-ATTATTTTTATAATAAT
36803933 TTATAATATTATTTTTATAA
1 TTATAATATTATTTTTATAA
36803953 ATGTACTAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
21 2 0.06
22 4 0.12
23 17 0.50
24 11 0.32
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TTATAATATTATTTTTATAATAAT
Found at i:36804044 original size:17 final size:17
Alignment explanation
Indices: 36803989--36804044 Score: 53
Period size: 18 Copynumber: 3.3 Consensus size: 17
36803979 GCATTATAGG
*
36803989 TTTTTATATATTTAGATA
1 TTTTTATAT-TTTATATA
* *
36804007 TTTTAATAAATTTATA-A
1 TTTTTAT-ATTTTATATA
36804024 -TTTTATATTTTATATA
1 TTTTTATATTTTATATA
36804040 TTTTT
1 TTTTT
36804045 CAAAATAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
15 7 0.23
16 6 0.20
17 5 0.17
18 11 0.37
19 1 0.03
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TTTTTATATTTTATATA
Found at i:36819398 original size:35 final size:35
Alignment explanation
Indices: 36819359--36819431 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
36819349 GAACACATCT
36819359 AAAGGATCCCATACAGAAAATAAGAATTCAATCCC
1 AAAGGATCCCATACAGAAAATAAGAATTCAATCCC
36819394 AAAGGATCCCATACAGAAAATAAGAATTCAATCCC
1 AAAGGATCCCATACAGAAAATAAGAATTCAATCCC
36819429 AAA
1 AAA
36819432 AAATAAGAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.51, C:0.22, G:0.11, T:0.16
Consensus pattern (35 bp):
AAAGGATCCCATACAGAAAATAAGAATTCAATCCC
Found at i:36819687 original size:27 final size:29
Alignment explanation
Indices: 36819630--36819689 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 29
36819620 ATCCTTTCCA
36819630 ATAATATAATATAATTAATTTATTAAATT
1 ATAATATAATATAATTAATTTATTAAATT
36819659 ATAATTATAA-AT-ATTAA-TTA-TAAATTT
1 ATAA-TATAATATAATTAATTTATTAAA-TT
36819686 ATAA
1 ATAA
36819690 CACAATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
26 4 0.14
27 9 0.31
28 5 0.17
29 6 0.21
30 5 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
ATAATATAATATAATTAATTTATTAAATT
Found at i:36831015 original size:15 final size:15
Alignment explanation
Indices: 36830992--36831027 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
36830982 TTTATTTAAA
*
36830992 ATTTAAAAATAAATT
1 ATTTCAAAATAAATT
36831007 ATTTCAAAATAAATT
1 ATTTCAAAATAAATT
36831022 ATTTCA
1 ATTTCA
36831028 TTTTATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (15 bp):
ATTTCAAAATAAATT
Found at i:36831519 original size:2 final size:2
Alignment explanation
Indices: 36831512--36831538 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
36831502 AAAACCGTTT
36831512 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
36831539 TCTCACAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36831662 original size:22 final size:24
Alignment explanation
Indices: 36831637--36831692 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
36831627 AATTAAATTG
36831637 TATATTTTTACTACTATAA-A-AA
1 TATATTTTTACTACTATAATAGAA
* * * *
36831659 TATAATTTTATTATTATAATAGCA
1 TATATTTTTACTACTATAATAGAA
36831683 TATATTTTTA
1 TATATTTTTA
36831693 TAAATTTAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
22 16 0.59
23 1 0.04
24 10 0.37
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (24 bp):
TATATTTTTACTACTATAATAGAA
Found at i:36831783 original size:17 final size:18
Alignment explanation
Indices: 36831744--36831785 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
36831734 GCTAAAGTTC
* *
36831744 TATATAATTATTATTAAT
1 TATAAAATTATTATAAAT
36831762 T-TAAAATT-TTATAAAT
1 TATAAAATTATTATAAAT
36831778 TATAAAAT
1 TATAAAAT
36831786 GCCTAAAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 8 0.38
17 12 0.57
18 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TATAAAATTATTATAAAT
Found at i:36833159 original size:48 final size:48
Alignment explanation
Indices: 36833104--36833198 Score: 190
Period size: 48 Copynumber: 2.0 Consensus size: 48
36833094 ACCTACCACC
36833104 AAATCTTTAAGAATATAAAATCATATCTTCTAAGATTACATATCTTAG
1 AAATCTTTAAGAATATAAAATCATATCTTCTAAGATTACATATCTTAG
36833152 AAATCTTTAAGAATATAAAATCATATCTTCTAAGATTACATATCTTA
1 AAATCTTTAAGAATATAAAATCATATCTTCTAAGATTACATATCTTA
36833199 TCTAAGATAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (48 bp):
AAATCTTTAAGAATATAAAATCATATCTTCTAAGATTACATATCTTAG
Found at i:36833200 original size:22 final size:22
Alignment explanation
Indices: 36833127--36833201 Score: 64
Period size: 22 Copynumber: 3.2 Consensus size: 22
36833117 TATAAAATCA
36833127 TATCTTCTAAGATTACATATCT
1 TATCTTCTAAGATTACATATCT
* *
36833149 TAGAAATCTT-TAAGAATATA-AAATCA
1 T----ATCTTCTAAG-AT-TACATATCT
36833175 TATCTTCTAAGATTACATATCT
1 TATCTTCTAAGATTACATATCT
36833197 TATCT
1 TATCT
36833202 AAGATATGTA
Statistics
Matches: 41, Mismatches: 4, Indels: 16
0.67 0.07 0.26
Matches are distributed among these distances:
21 2 0.05
22 17 0.41
23 4 0.10
25 4 0.10
26 12 0.29
27 2 0.05
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (22 bp):
TATCTTCTAAGATTACATATCT
Found at i:36851210 original size:23 final size:23
Alignment explanation
Indices: 36851128--36851214 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
36851118 CCTGATCAGT
*
36851128 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
36851150 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
36851170 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
36851193 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
36851215 TCGATAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:36852141 original size:16 final size:17
Alignment explanation
Indices: 36852106--36852141 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
36852096 CCTAATTCTC
36852106 CCTT-TTTCTTTTCTTT
1 CCTTCTTTCTTTTCTTT
36852122 -CTTCTTTC-TTTCTTT
1 CCTTCTTTCTTTTCTTT
36852137 CCTTC
1 CCTTC
36852142 CCCTGCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (17 bp):
CCTTCTTTCTTTTCTTT
Found at i:36872665 original size:21 final size:23
Alignment explanation
Indices: 36872618--36872665 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 23
36872608 ATAATGACAA
36872618 CAAAATAGTAAGAAAACAACAGT
1 CAAAATAGTAAGAAAACAACAGT
*
36872641 -AAAATAGTGA-AAAACAACA-T
1 CAAAATAGTAAGAAAACAACAGT
36872661 CAAAA
1 CAAAA
36872666 CAACAGGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 1 0.04
21 13 0.57
22 9 0.39
ACGTcount: A:0.65, C:0.12, G:0.10, T:0.12
Consensus pattern (23 bp):
CAAAATAGTAAGAAAACAACAGT
Found at i:36881298 original size:29 final size:29
Alignment explanation
Indices: 36881265--36881323 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
36881255 CCAACCCCCC
* *
36881265 TCTCCACCAACCTCTCTCCATCTTCATTT
1 TCTCCAACAACCCCTCTCCATCTTCATTT
* * *
36881294 TCTCCAACAACCCCTTTGCATCTTCTTTT
1 TCTCCAACAACCCCTCTCCATCTTCATTT
36881323 T
1 T
36881324 TGTTGTTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.17, C:0.41, G:0.02, T:0.41
Consensus pattern (29 bp):
TCTCCAACAACCCCTCTCCATCTTCATTT
Found at i:36884440 original size:18 final size:18
Alignment explanation
Indices: 36884417--36884454 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
36884407 CTATTAAATA
36884417 GCCTGAAATCTCAAACCT
1 GCCTGAAATCTCAAACCT
36884435 GCCTGAAATCTCAAACCT
1 GCCTGAAATCTCAAACCT
36884453 GC
1 GC
36884455 TATGTGGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.32, C:0.34, G:0.13, T:0.21
Consensus pattern (18 bp):
GCCTGAAATCTCAAACCT
Found at i:36887373 original size:21 final size:21
Alignment explanation
Indices: 36887343--36887396 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
36887333 TTCTAAATTT
36887343 TTAA-ATAAAATTTTAATTAA
1 TTAATATAAAATTTTAATTAA
36887363 TTAATATAAAATTTTAATTAA
1 TTAATATAAAATTTTAATTAA
36887384 TTAATATAAAATT
1 TTAATATAAAATT
36887397 ATATAAAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 4 0.12
21 29 0.88
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TTAATATAAAATTTTAATTAA
Found at i:36887500 original size:70 final size:70
Alignment explanation
Indices: 36887418--36887701 Score: 559
Period size: 70 Copynumber: 4.1 Consensus size: 70
36887408 AATTTTAATT
*
36887418 AAATAATAATTTATTTAAAAGCTTTATTTTTTAAATGTTGTAATAATATTAATACATTTTATTAA
1 AAATAATCATTTATTTAAAAGCTTTATTTTTTAAATGTTGTAATAATATTAATACATTTTATTAA
36887483 TTATG
66 TTATG
36887488 AAATAATCATTTATTTAAAAGCTTTATTTTTTAAATGTTGTAATAATATTAATACATTTTATTAA
1 AAATAATCATTTATTTAAAAGCTTTATTTTTTAAATGTTGTAATAATATTAATACATTTTATTAA
36887553 TTATG
66 TTATG
36887558 AAATAATCATTTATTTAAAAGCTTTATTTTTTAAATGTTGTAATAATATTAATACATTTTATTAA
1 AAATAATCATTTATTTAAAAGCTTTATTTTTTAAATGTTGTAATAATATTAATACATTTTATTAA
36887623 TTATG
66 TTATG
36887628 AAATAATCATTTATTTAAAAGCTTTATTTTTTAAATGTTGTAATAATATTAATACATTTTATTAA
1 AAATAATCATTTATTTAAAAGCTTTATTTTTTAAATGTTGTAATAATATTAATACATTTTATTAA
36887693 TTATG
66 TTATG
36887698 AAAT
1 AAAT
36887702 TAAATCTATC
Statistics
Matches: 213, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 213 1.00
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.50
Consensus pattern (70 bp):
AAATAATCATTTATTTAAAAGCTTTATTTTTTAAATGTTGTAATAATATTAATACATTTTATTAA
TTATG
Found at i:36887514 original size:35 final size:35
Alignment explanation
Indices: 36887475--36887655 Score: 108
Period size: 35 Copynumber: 5.2 Consensus size: 35
36887465 ATTAATACAT
36887475 TTTATTAATTATGAAATAATCATTTATTTAAAAGC
1 TTTATTAATTATGAAATAATCATTTATTTAAAAGC
* ** * * * *
36887510 TTTATT--TT-TTAAATGTTGTAATAATATTAATACA-T
1 TTTATTAATTATGAAATAAT-CATTTAT-TTAA-A-AGC
36887545 TTTATTAATTATGAAATAATCATTTATTTAAAAGC
1 TTTATTAATTATGAAATAATCATTTATTTAAAAGC
* ** * * * *
36887580 TTTATT--TT-TTAAATGTTGTAATAATATTAATACA-T
1 TTTATTAATTATGAAATAAT-CATTTAT-TTAA-A-AGC
36887615 TTTATTAATTATGAAATAATCATTTATTTAAAAGC
1 TTTATTAATTATGAAATAATCATTTATTTAAAAGC
36887650 TTTATT
1 TTTATT
36887656 TTTTAAATGT
Statistics
Matches: 102, Mismatches: 28, Indels: 32
0.63 0.17 0.20
Matches are distributed among these distances:
32 12 0.12
33 12 0.12
34 10 0.10
35 34 0.33
36 10 0.10
37 12 0.12
38 12 0.12
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (35 bp):
TTTATTAATTATGAAATAATCATTTATTTAAAAGC
Found at i:36887517 original size:140 final size:139
Alignment explanation
Indices: 36887385--36887701 Score: 449
Period size: 140 Copynumber: 2.3 Consensus size: 139
36887375 TTTAATTAAT
*
36887385 TAAT-ATAAAATTATATAAAATTAAATT-TTAATTAAATAATAATTTATTTAAAAGCTTTATTTT
1 TAATAATAAAATTA-AT-AAATTAAATTATT-ATGAAATAATAATTTATTTAAAAGCTTTATTTT
36887448 TTAAATGTTGTAATAATATTAATACATTTTATTAATTATGAAATAATCATTTATTTAAAAGCTTT
63 TTAAATGTTGTAATAATATTAATACATTTTATTAATTATGAAATAATCATTTATTTAAAAGCTTT
36887513 ATTTTTTAAATG
128 ATTTTTTAAATG
** * * ** *
36887525 TTGTAATAATATTAATACATTTTATTAATTATGAAATAATCATTTATTTAAAAGCTTTATTTTTT
1 TAATAATAAAATTAATAAATTAAATT-ATTATGAAATAATAATTTATTTAAAAGCTTTATTTTTT
36887590 AAATGTTGTAATAATATTAATACATTTTATTAATTATGAAATAATCATTTATTTAAAAGCTTTAT
65 AAATGTTGTAATAATATTAATACATTTTATTAATTATGAAATAATCATTTATTTAAAAGCTTTAT
36887655 TTTTTAAATG
130 TTTTTAAATG
** * * **
36887665 TTGTAATAATATTAATACATTTTATTAATTATGAAAT
1 TAATAATAAAATTAATAAATTAAATT-ATTATGAAAT
36887702 TAAATCTATC
Statistics
Matches: 166, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
139 7 0.04
140 149 0.90
141 10 0.06
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.49
Consensus pattern (139 bp):
TAATAATAAAATTAATAAATTAAATTATTATGAAATAATAATTTATTTAAAAGCTTTATTTTTTA
AATGTTGTAATAATATTAATACATTTTATTAATTATGAAATAATCATTTATTTAAAAGCTTTATT
TTTTAAATG
Found at i:36888002 original size:60 final size:59
Alignment explanation
Indices: 36887938--36888055 Score: 130
Period size: 60 Copynumber: 2.0 Consensus size: 59
36887928 CTATGTACCT
* * *
36887938 TGAAGG-ATATTTCCTTCAAGGTACATAGAATTAGGATCAAATTGATAGAATTTGTAAACG
1 TGAAGGCATATTT-ATTCAA-GTACATAGAATTAAGATCAAATTGATAGAATATGTAAACG
* * ** *
36887998 TGAAGGTCATATTTATTGAATTATTTAGAATTAAGATCAAATTGATGGAATATGTAAA
1 TGAAGG-CATATTTATTCAAGTACATAGAATTAAGATCAAATTGATAGAATATGTAAA
36888056 TATTGAAGAC
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
60 38 0.79
61 4 0.08
62 6 0.12
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.35
Consensus pattern (59 bp):
TGAAGGCATATTTATTCAAGTACATAGAATTAAGATCAAATTGATAGAATATGTAAACG
Found at i:36889973 original size:46 final size:52
Alignment explanation
Indices: 36889923--36890029 Score: 136
Period size: 53 Copynumber: 2.2 Consensus size: 52
36889913 TAGCCCTCCC
*
36889923 ATGGTCTTACACGG-ATCACA-TA-ACAT-AC-C-GATGCCATACCCCAGAT
1 ATGGTCTTACACGGAATCACATTACACATCACACTGATGCCATAACCCAGAT
* *
36889969 ATGGTCTTATACGGAATCACATTATCACATCACACTGATGCCATAACCCAGCT
1 ATGGTCTTACACGGAATCACATTA-CACATCACACTGATGCCATAACCCAGAT
36890022 ATGGTCTT
1 ATGGTCTT
36890030 GTACAGAAGT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
46 13 0.25
47 6 0.12
48 2 0.04
50 4 0.08
51 2 0.04
52 1 0.02
53 23 0.45
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (52 bp):
ATGGTCTTACACGGAATCACATTACACATCACACTGATGCCATAACCCAGAT
Found at i:36890019 original size:53 final size:52
Alignment explanation
Indices: 36889952--36890051 Score: 139
Period size: 53 Copynumber: 1.9 Consensus size: 52
36889942 ATAACATACC
* *
36889952 GATGCCATACCCCAGATATGGTCTTATACGGAA-TCACATTATCACATCACACT
1 GATGCCATAACCCAGATATGGTCTTATACAGAAGT-ACA-TATCACATCACACT
* *
36890005 GATGCCATAACCCAGCTATGGTCTTGTACAGAAGTACATATCACATC
1 GATGCCATAACCCAGATATGGTCTTATACAGAAGTACATATCACATC
36890052 TTTTCTGTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
52 9 0.21
53 32 0.76
54 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (52 bp):
GATGCCATAACCCAGATATGGTCTTATACAGAAGTACATATCACATCACACT
Found at i:36891524 original size:5 final size:5
Alignment explanation
Indices: 36891514--36891538 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
36891504 TATATATATG
36891514 TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA
36891539 AAGGAACGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:36893231 original size:40 final size:40
Alignment explanation
Indices: 36893183--36893264 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
36893173 GTACATTGAC
* *
36893183 CAATATAAATCATTTTAGCACTTCAATGAACAATATAAAA
1 CAATATAAATCATTTTAGAACTTCAATGAACAAAATAAAA
*
36893223 CAATATAAATCATTTTAGAACTTCAATGAGCAAAATAAAA
1 CAATATAAATCATTTTAGAACTTCAATGAACAAAATAAAA
36893263 CA
1 CA
36893265 TACTTTTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.51, C:0.15, G:0.06, T:0.28
Consensus pattern (40 bp):
CAATATAAATCATTTTAGAACTTCAATGAACAAAATAAAA
Found at i:36893874 original size:20 final size:20
Alignment explanation
Indices: 36893849--36893886 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36893839 GACATGGCAA
*
36893849 TGTTGACCAATGATATGGTG
1 TGTTGACCAATGACATGGTG
*
36893869 TGTTGACCGATGACATGG
1 TGTTGACCAATGACATGG
36893887 CACATTGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.13, G:0.32, T:0.32
Consensus pattern (20 bp):
TGTTGACCAATGACATGGTG
Found at i:36893967 original size:16 final size:16
Alignment explanation
Indices: 36893942--36893989 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
36893932 GACCAGTAAA
* *
36893942 AAAAAATAAAAAATTT
1 AAAAATTAAAAAAATT
*
36893958 TAAAATTAAAAAAATT
1 AAAAATTAAAAAAATT
36893974 AAAAATTAAAAAAATT
1 AAAAATTAAAAAAATT
36893990 GCAAAAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAATTAAAAAAATT
Found at i:36894070 original size:20 final size:20
Alignment explanation
Indices: 36894045--36894096 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
36894035 AAAAATTAAT
36894045 TTGTAAAAATT-CTAAAAAAA
1 TTGTAAAAATTAC-AAAAAAA
36894065 TTGTAAAAATTACAAAAAAA
1 TTGTAAAAATTACAAAAAAA
36894085 TAT-TAAAAATTA
1 T-TGTAAAAATTA
36894097 TTGTAATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 28 0.93
21 2 0.07
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.31
Consensus pattern (20 bp):
TTGTAAAAATTACAAAAAAA
Found at i:36894380 original size:9 final size:9
Alignment explanation
Indices: 36894366--36894407 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
36894356 AATCTTTGCA
36894366 ATTTTTAAT
1 ATTTTTAAT
*
36894375 ATTTTTAAA
1 ATTTTTAAT
*
36894384 AGTTTTAAT
1 ATTTTTAAT
36894393 GA-TTTTAAT
1 -ATTTTTAAT
36894402 ATTTTT
1 ATTTTT
36894408 TTTACATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 1 0.04
9 26 0.93
10 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:36896979 original size:75 final size:80
Alignment explanation
Indices: 36896894--36897050 Score: 234
Period size: 81 Copynumber: 2.0 Consensus size: 80
36896884 TATAAATTAA
*
36896894 AGAAATAATTTTCATGTCATTTTTTAAACAAT-AA-A-T-G-CTATTCCAATTTTACCCTATTTG
1 AGAAATAATTTTCATGCCATTTTTTAAACAATAAATACTAGCCTATTCCAATTTTACCCTATTTG
36896954 ATTCTTTTTAATAGT
66 ATTCTTTTTAATAGT
* * *
36896969 AGAAATAATTTTCATGCCATTTTTTAAACAGTAAATACTAGCTCTATTCCAATTTTATCCTGTTT
1 AGAAATAATTTTCATGCCATTTTTTAAACAATAAATACTAGC-CTATTCCAATTTTACCCTATTT
36897034 GATTCTTTTTAATAGT
65 GATTCTTTTTAATAGT
36897050 A
1 A
36897051 CACGGCTACA
Statistics
Matches: 72, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
75 30 0.42
76 2 0.03
77 1 0.01
78 1 0.01
79 1 0.01
81 37 0.51
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.46
Consensus pattern (80 bp):
AGAAATAATTTTCATGCCATTTTTTAAACAATAAATACTAGCCTATTCCAATTTTACCCTATTTG
ATTCTTTTTAATAGT
Found at i:36898275 original size:126 final size:126
Alignment explanation
Indices: 36898049--36898276 Score: 377
Period size: 126 Copynumber: 1.8 Consensus size: 126
36898039 GGATATTCGA
* * *
36898049 ATATTCAAAACAAACAAAGAAAGCGAAGCCCAGTACGTTAGGGCATGATTCTTCGAATTCTTTAA
1 ATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATCCTTCGAATTCTTTAA
* **
36898114 ATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACCAGTAAAGGGATGCTCTG
66 ATACCGAACATTGCCATTATTTTGAAAAAAATTGAGAGTGAACCAGTAAAGGGATGCTCTG
*
36898175 ATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATCCTTTGAATTCTTTAA
1 ATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATCCTTCGAATTCTTTAA
36898240 ATACCGAACATTGCCATTATTTT-AAAAACAATTGAGA
66 ATACCGAACATTGCCATTATTTTGAAAAA-AATTGAGA
36898277 ATAAATCTGT
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
125 5 0.05
126 89 0.95
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.27
Consensus pattern (126 bp):
ATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATCCTTCGAATTCTTTAA
ATACCGAACATTGCCATTATTTTGAAAAAAATTGAGAGTGAACCAGTAAAGGGATGCTCTG
Found at i:36898819 original size:18 final size:18
Alignment explanation
Indices: 36898796--36898837 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
36898786 ATAATGCTAC
*
36898796 AATAACCA-TAAACATAGT
1 AATAACCATTAAA-ATAAT
*
36898814 AATAACGATTAAAATAAT
1 AATAACCATTAAAATAAT
36898832 AATAAC
1 AATAAC
36898838 GACAACAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.24
Consensus pattern (18 bp):
AATAACCATTAAAATAAT
Found at i:36898864 original size:3 final size:3
Alignment explanation
Indices: 36898858--36899032 Score: 82
Period size: 3 Copynumber: 60.0 Consensus size: 3
36898848 TAGAAGACAT
* * * *
36898858 TAA TAA TAA T-A TAT TAA TAA AAA TAA AAA TAA T-A TAA AAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * ** ** *
36898904 AAA TAA CAA T-A TGT TTC TAA TAA TAA TAA -AA -AA TTAA TAA TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA
* * *
36898947 TAA TAA -ATA TATA TAA -AA TAA TAG TAA CAG TAA TAA -AA TAA -ATA
1 TAA TAA TA-A TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* * *
36898991 TAA T-A TAA TAA TAA TATA TAA TAA TAA CAA TAT TAA AAA TAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
36899033 CACTTTCCCT
Statistics
Matches: 128, Mismatches: 31, Indels: 26
0.69 0.17 0.14
Matches are distributed among these distances:
2 18 0.14
3 99 0.77
4 11 0.09
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:36898888 original size:20 final size:20
Alignment explanation
Indices: 36898858--36898909 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
36898848 TAGAAGACAT
*
36898858 TAATAATAAT-ATATTAATAAA
1 TAATAAAAATAATA-TAA-AAA
36898879 -AATAAAAATAATATAAAAA
1 TAATAAAAATAATATAAAAA
36898898 TAATAAAAATAA
1 TAATAAAAATAA
36898910 CAATATGTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 3 0.11
20 22 0.79
21 3 0.11
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (20 bp):
TAATAAAAATAATATAAAAA
Found at i:36898890 original size:26 final size:26
Alignment explanation
Indices: 36898872--36899032 Score: 82
Period size: 26 Copynumber: 6.1 Consensus size: 26
36898862 AATAATATAT
36898872 TAATAAAAATAAAAATAATATAAAAA
1 TAATAAAAATAAAAATAATATAAAAA
** * *
36898898 TAATAAAAATAACAATATGTTTCTAATAA
1 TAATAAAAATAA-AA-AT-AATATAAAAA
**
36898927 TAATAAAAA-ATTAATAATGATAATAAA
1 TAATAAAAATAAAAATAAT-ATAA-AAA
* * *
36898954 T-AT--ATAT-AAAATAATAGTAACAG
1 TAATAAAAATAAAAATAATA-TAAAAA
* *
36898977 TAAT-AAAATAAATATAATATAATAA
1 TAATAAAAATAAAAATAATATAAAAA
* * *
36899002 TAATATATAATAATAACAATATTAAAAA
1 TAATA-AAAATAAAAATAATA-TAAAAA
36899030 TAA
1 TAA
36899033 CACTTTCCCT
Statistics
Matches: 98, Mismatches: 24, Indels: 24
0.67 0.16 0.16
Matches are distributed among these distances:
23 3 0.03
24 13 0.13
25 12 0.12
26 27 0.28
27 17 0.17
28 11 0.11
29 15 0.15
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (26 bp):
TAATAAAAATAAAAATAATATAAAAA
Found at i:36898941 original size:17 final size:18
Alignment explanation
Indices: 36898921--36899017 Score: 62
Period size: 17 Copynumber: 5.5 Consensus size: 18
36898911 AATATGTTTC
36898921 TAATAATAATAAAAAAT-
1 TAATAATAATAAAAAATA
* *
36898938 TAATAATGATAATAAATA
1 TAATAATAATAAAAAATA
* *
36898956 TATATAA-AAT-AATAGTA
1 TA-ATAATAATAAAAAATA
*
36898973 -ACAGTAATAA-AATAAATA
1 TA-A-TAATAATAAAAAATA
*
36898991 TAAT-ATAATAATAATATA
1 TAATAATAATAA-AAAATA
36899009 TAATAATAA
1 TAATAATAA
36899018 CAATATTAAA
Statistics
Matches: 59, Mismatches: 12, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
16 6 0.10
17 25 0.42
18 19 0.32
19 9 0.15
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (18 bp):
TAATAATAATAAAAAATA
Found at i:36898944 original size:20 final size:20
Alignment explanation
Indices: 36898856--36898953 Score: 58
Period size: 20 Copynumber: 4.9 Consensus size: 20
36898846 AATAGAAGAC
*
36898856 ATTAATAATAATATATTAATAA
1 ATTAATAATAATA-A-TAAAAA
*
36898878 A--AATAAAAATAATATAAAA
1 ATTAATAATAATAATA-AAAA
* * * *
36898897 A-TAATAAAAATAACAATAT
1 ATTAATAATAATAATAAAAA
* **
36898916 GTTTCTAATAATAATAAAAA
1 ATTAATAATAATAATAAAAA
*
36898936 ATTAATAATGATAATAAA
1 ATTAATAATAATAATAAA
36898954 TATATATAAA
Statistics
Matches: 57, Mismatches: 16, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
18 2 0.04
19 7 0.12
20 47 0.82
22 1 0.02
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (20 bp):
ATTAATAATAATAATAAAAA
Found at i:36899283 original size:24 final size:24
Alignment explanation
Indices: 36899248--36899297 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
36899238 TTTTTTTGTA
*
36899248 GGCAAGTGGGGTGATGGAGTTAGT
1 GGCAAGTGGGGTAATGGAGTTAGT
*
36899272 GGCAAGTTGGGTAATGGAGTTAGT
1 GGCAAGTGGGGTAATGGAGTTAGT
36899296 GG
1 GG
36899298 GATGGTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.04, G:0.48, T:0.26
Consensus pattern (24 bp):
GGCAAGTGGGGTAATGGAGTTAGT
Found at i:36899333 original size:17 final size:17
Alignment explanation
Indices: 36899280--36899363 Score: 67
Period size: 17 Copynumber: 5.4 Consensus size: 17
36899270 GTGGCAAGTT
*
36899280 GGGTAATGGAGTTAGT-
1 GGGTGATGGAGTTAGTG
* *
36899296 -GG-GATGG-TTTAATG
1 GGGTGATGGAGTTAGTG
*
36899310 GGATGATGGAGTTAGTG
1 GGGTGATGGAGTTAGTG
36899327 GGGTGAT----TTAGTG
1 GGGTGATGGAGTTAGTG
*
36899340 GGGTGATAGAGTTAGTG
1 GGGTGATGGAGTTAGTG
36899357 GGGTGAT
1 GGGTGAT
36899364 TTAGTAGGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 15
0.71 0.09 0.20
Matches are distributed among these distances:
13 17 0.32
14 4 0.08
15 3 0.06
16 5 0.09
17 24 0.45
ACGTcount: A:0.21, C:0.00, G:0.46, T:0.32
Consensus pattern (17 bp):
GGGTGATGGAGTTAGTG
Found at i:36899339 original size:13 final size:13
Alignment explanation
Indices: 36899321--36899374 Score: 63
Period size: 13 Copynumber: 3.8 Consensus size: 13
36899311 GATGATGGAG
36899321 TTAGTGGGGTGAT
1 TTAGTGGGGTGAT
36899334 TTAGTGGGGTGAT
1 TTAGTGGGGTGAT
36899347 AGAGTTAGTGGGGTGAT
1 ----TTAGTGGGGTGAT
*
36899364 TTAGTAGGGTG
1 TTAGTGGGGTG
36899375 TAGGGGTGAT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
13 23 0.64
17 13 0.36
ACGTcount: A:0.19, C:0.00, G:0.46, T:0.35
Consensus pattern (13 bp):
TTAGTGGGGTGAT
Found at i:36899367 original size:30 final size:30
Alignment explanation
Indices: 36899288--36899374 Score: 120
Period size: 30 Copynumber: 2.9 Consensus size: 30
36899278 TTGGGTAATG
* * * * *
36899288 GAGTTAGTGGGATGGTTTAATGGGATGATG
1 GAGTTAGTGGGGTGATTTAGTGGGGTGATA
36899318 GAGTTAGTGGGGTGATTTAGTGGGGTGATA
1 GAGTTAGTGGGGTGATTTAGTGGGGTGATA
*
36899348 GAGTTAGTGGGGTGATTTAGTAGGGTG
1 GAGTTAGTGGGGTGATTTAGTGGGGTG
36899375 TAGGGGTGAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.21, C:0.00, G:0.46, T:0.33
Consensus pattern (30 bp):
GAGTTAGTGGGGTGATTTAGTGGGGTGATA
Found at i:36899892 original size:133 final size:133
Alignment explanation
Indices: 36899661--36900819 Score: 1560
Period size: 133 Copynumber: 8.7 Consensus size: 133
36899651 GATCTGCTGT
** ** * *
36899661 AATTTGATCTGCTTTACTCCTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCT--AATATTTAGCCTGCTCCACTCC
**
36899726 TGCTCAGTGAAGATAAGGCTGATGATTTG-AATCTGCTCCATTGCCGATACATGGAGATAAGATT
64 TGCTCAGTGAAGATAAGGCTGATG-GCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATT
36899790 CATCAA
128 CATCAA
* *
36899796 AATTTGATCTGCTCCGCTCCTGCTCAGCAAAGATAAGATCTAATATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAATATTTAGCCTGCTCCACTCCTG
* *
36899861 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCAATACATGGAGATAAGACTTGC
66 CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGA-TT-C
36899926 -T-AA
129 ATCAA
* * * *
36899929 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCT--AATATTTAGCCTGCTCCACTCC
* * * * *
36899994 TGCTCAGTGAAGATAAGGCTGATGGTTGAAATTTGCTCCATTGCCGATACATGAAGGTTAGATTC
64 TGCTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
*
36900059 ACCAA
129 ATCAA
* *
36900064 AATTTGATCTGTTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAATATTTAGCCTGCTCCACTCCTG
** *
36900129 CTCAGTGAAGATAAGGCTGATGATTTG-AATCTGCTCCATTGCCAATACATGGAGATAAGATTCA
66 CTCAGTGAAGATAAGGCTGATG-GCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCA
36900193 TCAA
130 TCAA
*
36900197 AATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTAATATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAATATTTAGCCTGCTCCACTCCTG
* *
36900262 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCAATACATGGAGATAAGACTTGC
66 CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGA-TT-C
36900327 -T-AA
129 ATCAA
* * * * *
36900330 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTTC
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCT--AATATTTAGCCTGCTCCACTCC
* * * * *
36900395 TGCTCAGTGAAGATAAGGCTGATGGCTGAAATTTACTCTATTGCCGATACATGGAGGTTAGATTC
64 TGCTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
*
36900460 ACCAA
129 ATCAA
* * *
36900465 AATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATTTAGTATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAATATTTAGCCTGCTCCACTCCTG
* * ** * *
36900530 CTCAGTGAAAATAAGGCTAATGATTGGAATCTGCTCTATTGCCGATACATGGAGATAAGATTCAT
66 CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAT
36900595 CAA
131 CAA
** * *
36900598 AATTTGATCTGCTCTGCTCCTGCTCAGCAAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAATATTTAGCCTGCTCCACTCCTG
* * *
36900663 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCTGATACGTGGAGATAAGACTTGC
66 CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGA-TT-C
36900728 --CAA
129 ATCAA
* * * *
36900731 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCT--AATATTTAGCCTGCTCCACTCC
*
36900796 TGCTCAGTGAAGATAAAGCTGATG
64 TGCTCAGTGAAGATAAGGCTGATG
36900820 ATTTTAGCCT
Statistics
Matches: 908, Mismatches: 97, Indels: 38
0.87 0.09 0.04
Matches are distributed among these distances:
132 4 0.00
133 580 0.64
134 15 0.02
135 309 0.34
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (133 bp):
AATTTGATCTGCTCCACTCCTGCTCAGCGAAGATAAGATCTAATATTTAGCCTGCTCCACTCCTG
CTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAT
CAA
Found at i:36900138 original size:268 final size:267
Alignment explanation
Indices: 36899661--36900819 Score: 1668
Period size: 268 Copynumber: 4.3 Consensus size: 267
36899651 GATCTGCTGT
* *
36899661 AATTTGATCTGCTTTACTCCTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
*
36899726 TGCTCAGTGAAGATAAGGCTGATGATTTG-AATCTGCTCCATTGCCGATACATGGAGATAAGATT
66 TGCTCAGTGAAGATAAGGCTGATG-GTTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATT
* * *
36899790 CATCAAAATTTGATCTGCTCCGCTCCTGCTCAGCAAAGATAAGATCTAATATTTAGCCTGCTCCA
130 CACCAAAATTTGATCTGCTCCACTCCTGCTCAGCAAAGATAAGATCTAGTATTTAGCCTGCTCCA
*
36899855 CTCCTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCAATACATGGAGATAAG
195 CTCCTGCTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCAATACATGGAGATAAG
*
36899920 ACTTGCTAA
260 A-TTGCCAA
36899929 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
* * * *
36899994 TGCTCAGTGAAGATAAGGCTGATGGTTGAAATTTGCTCCATTGCCGATACATGAAGGTTAGATTC
66 TGCTCAGTGAAGATAAGGCTGATGGTTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
* *
36900059 ACCAAAATTTGATCTGTTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATTTAGCCTGCTCCAC
131 ACCAAAATTTGATCTGCTCCACTCCTGCTCAGCAAAGATAAGATCTAGTATTTAGCCTGCTCCAC
**
36900124 TCCTGCTCAGTGAAGATAAGGCTGATGATTTG-AATCTGCTCCATTGCCAATACATGGAGATAAG
196 TCCTGCTCAGTGAAGATAAGGCTGATG-GCTGAAATCTGCTCCATTGCCAATACATGGAGATAAG
36900188 ATT-CATCAA
260 ATTGC--CAA
* * * * *
36900197 AATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCT--AATATTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
* * *
36900260 TGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCAATACATGGAGATAAGACTT
66 TGCTCAGTGAAGATAAGGCTGATGGTTGAAATCTGCTCCATTGCCGATACATGGAGATAAGA-TT
* * * ** *
36900325 -GCTAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTC
130 CACCAAAATTTGATCTGCTCCACTCCTGCTCAGCAAAGATAAGATCTAGTA--TTTAGCCTGCTC
* * * * * * *
36900389 CACTTCTGCTCAGTGAAGATAAGGCTGATGGCTGAAATTTACTCTATTGCCGATACATGGAGGTT
193 CACTCCTGCTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCAATACATGGAGATA
*
36900454 AGATTCACCAA
258 AGATT-GCCAA
* * * * *
36900465 AATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATTTAGTA--TTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
* * * * *
36900528 TGCTCAGTGAAAATAAGGCTAATGATTGGAATCTGCTCTATTGCCGATACATGGAGATAAGATTC
66 TGCTCAGTGAAGATAAGGCTGATGGTTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
* **
36900593 ATCAAAATTTGATCTGCTCTGCTCCTGCTCAGCAAAGATAAGATCTAGTATTTAGCCTGCTCCAC
131 ACCAAAATTTGATCTGCTCCACTCCTGCTCAGCAAAGATAAGATCTAGTATTTAGCCTGCTCCAC
* ** *
36900658 TCCTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCTGATACGTGGAGATAAGA
196 TCCTGCTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCAATACATGGAGATAAGA
36900723 CTTGCCAA
261 -TTGCCAA
36900731 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
*
36900796 TGCTCAGTGAAGATAAAGCTGATG
66 TGCTCAGTGAAGATAAGGCTGATG
36900820 ATTTTAGCCT
Statistics
Matches: 795, Mismatches: 80, Indels: 32
0.88 0.09 0.04
Matches are distributed among these distances:
266 235 0.30
267 13 0.02
268 543 0.68
269 2 0.00
270 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (267 bp):
AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
TGCTCAGTGAAGATAAGGCTGATGGTTGAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
ACCAAAATTTGATCTGCTCCACTCCTGCTCAGCAAAGATAAGATCTAGTATTTAGCCTGCTCCAC
TCCTGCTCAGTGAAGATAAGGCTGATGGCTGAAATCTGCTCCATTGCCAATACATGGAGATAAGA
TTGCCAA
Found at i:36900139 original size:43 final size:43
Alignment explanation
Indices: 36899676--36900276 Score: 217
Period size: 43 Copynumber: 13.5 Consensus size: 43
36899666 GATCTGCTTT
* * *
36899676 ACTCCTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCC
1 ACTCCTGCTCAGTGAAGATAAGATCT--AATATTTAGCCTGCTCC
* * **
36899721 ACTCCTGCTCAGTGAAGATAAG-GCTGATGATTTGAATCTGCTCC
1 ACTCCTGCTCAGTGAAGATAAGATCTAAT-ATTT-AGCCTGCTCC
* * * * *
36899765 ATTGCC-GATACA-TGGAGATAAGATTCATCAAAATTT-GATCTGCTCC
1 ACT-CCTGCT-CAGTGAAGATAAGA-TC-T-AATATTTAG-CCTGCTCC
* **
36899811 GCTCCTGCTCAGCAAAGATAAGATCTAATATTTAGCCTGCTCC
1 ACTCCTGCTCAGTGAAGATAAGATCTAATATTTAGCCTGCTCC
* ** * ** **
36899854 ACTCCTGCTCAGTGAAGATAAG-GCTGGTGGCTGAAATCTGCTCC
1 ACTCCTGCTCAGTGAAGATAAGATCTAAT--ATTTAGCCTGCTCC
* ** * * * *
36899898 ATTGCC-AATACA-TGGAGATAAGACTTGCTAAAATTT-GATCTGCTTC
1 ACT-CCTGCT-CAGTGAAGATAAGA--T-CTAATATTTAG-CCTGCTCC
* *
36899944 ACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTCC
1 ACTCCTGCTCAGTGAAGATAAGATCT--AATATTTAGCCTGCTCC
* * * * ***
36899989 ACTCCTGCTCAGTGAAGATAAG-GCTGATGGTTGAAATTTGCTCC
1 ACTCCTGCTCAGTGAAGATAAGATCTAAT-ATT-TAGCCTGCTCC
* * * * * * * *
36900033 ATTGCC-GATACA-TGAAGGTTAGATTCACCAAAATTT-GATCTGTTCC
1 ACT-CCTGCT-CAGTGAAGATAAGA-T--CTAATATTTAG-CCTGCTCC
* *
36900079 ACTCCTGCTCAGCGAAGATAAGATCTAGTATTTAGCCTGCTCC
1 ACTCCTGCTCAGTGAAGATAAGATCTAATATTTAGCCTGCTCC
* * **
36900122 ACTCCTGCTCAGTGAAGATAAG-GCTGATGATTTGAATCTGCTCC
1 ACTCCTGCTCAGTGAAGATAAGATCTAAT-ATTT-AGCCTGCTCC
* ** * * *
36900166 ATTGCC-AATACA-TGGAGATAAGATTCATCAAAATTT-GATCTGCTCC
1 ACT-CCTGCT-CAGTGAAGATAAGA-TC-T-AATATTTAG-CCTGCTCC
* *
36900212 GCTCCTGCTCAGCGAAGATAAGATCTAATATTTAGCCTGCTCC
1 ACTCCTGCTCAGTGAAGATAAGATCTAATATTTAGCCTGCTCC
36900255 ACTCCTGCTCAGTGAAGATAAG
1 ACTCCTGCTCAGTGAAGATAAG
36900277 GCTGGTGGCT
Statistics
Matches: 399, Mismatches: 107, Indels: 102
0.66 0.18 0.17
Matches are distributed among these distances:
42 10 0.03
43 110 0.28
44 91 0.23
45 90 0.23
46 80 0.20
47 12 0.03
48 6 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
ACTCCTGCTCAGTGAAGATAAGATCTAATATTTAGCCTGCTCC
Found at i:36900455 original size:401 final size:401
Alignment explanation
Indices: 36899661--36900819 Score: 2059
Period size: 401 Copynumber: 2.9 Consensus size: 401
36899651 GATCTGCTGT
* ** *
36899661 AATTTGATCTGCTT-TACTCCTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTC
1 AATTTGATCTG-TTCCACTCCTGCTCAGCGAAGATAAGATCTAGTA--TTTAGCCTGCTCCACTC
36899725 CTGCTCAGTGAAGATAAGGCTGATGATTTGAATCTGCTCCATTGCCGATACATGGAGATAAGATT
63 CTGCTCAGTGAAGATAAGGCTGATGATTTGAATCTGCTCCATTGCCGATACATGGAGATAAGATT
36899790 CATCAAAATTTGATCTGCTCCGCTCCTGCTCAGCAAAGATAAGATCTAATATTTAGCCTGCTCCA
128 CATCAAAATTTGATCTGCTCCGCTCCTGCTCAGCAAAGATAAGATCTAATATTTAGCCTGCTCCA
36899855 CTCCTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCAATACATGGAGATAAG
193 CTCCTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCAATACATGGAGATAAG
36899920 ACTTGCTAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTG
258 ACTTGCTAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTG
* *
36899985 CTCCACTCCTGCTCAGTGAAGATAAGGCTGATGGTTGAAATTTGCTCCATTGCCGATACATGAAG
323 CTCCACTCCTGCTCAGTGAAGATAAGGCTGATGGCTGAAATTTACTCCATTGCCGATACATGAAG
36900050 GTTAGATTCACCAA
388 GTTAGATTCACCAA
36900064 AATTTGATCTGTTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGTTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
*
36900129 CTCAGTGAAGATAAGGCTGATGATTTGAATCTGCTCCATTGCCAATACATGGAGATAAGATTCAT
66 CTCAGTGAAGATAAGGCTGATGATTTGAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAT
*
36900194 CAAAATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATCTAATATTTAGCCTGCTCCACTC
131 CAAAATTTGATCTGCTCCGCTCCTGCTCAGCAAAGATAAGATCTAATATTTAGCCTGCTCCACTC
36900259 CTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCAATACATGGAGATAAGACT
196 CTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCAATACATGGAGATAAGACT
36900324 TGCTAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTC
261 TGCTAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTC
* * *
36900389 CACTTCTGCTCAGTGAAGATAAGGCTGATGGCTGAAATTTACTCTATTGCCGATACATGGAGGTT
326 CACTCCTGCTCAGTGAAGATAAGGCTGATGGCTGAAATTTACTCCATTGCCGATACATGAAGGTT
36900454 AGATTCACCAA
391 AGATTCACCAA
* * *
36900465 AATTTGATCTGCTCCGCTCCTGCTCAGCGAAGATAAGATTTAGTATTTAGCCTGCTCCACTCCTG
1 AATTTGATCTGTTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
* * * *
36900530 CTCAGTGAAAATAAGGCTAATGATTGGAATCTGCTCTATTGCCGATACATGGAGATAAGATTCAT
66 CTCAGTGAAGATAAGGCTGATGATTTGAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAT
* *
36900595 CAAAATTTGATCTGCTCTGCTCCTGCTCAGCAAAGATAAGATCTAGTATTTAGCCTGCTCCACTC
131 CAAAATTTGATCTGCTCCGCTCCTGCTCAGCAAAGATAAGATCTAATATTTAGCCTGCTCCACTC
** *
36900660 CTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCTGATACGTGGAGATAAGACT
196 CTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCAATACATGGAGATAAGACT
*
36900725 TGCCAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTC
261 TGCTAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTC
*
36900790 CACTCCTGCTCAGTGAAGATAAAGCTGATG
326 CACTCCTGCTCAGTGAAGATAAGGCTGATG
36900820 ATTTTAGCCT
Statistics
Matches: 727, Mismatches: 28, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
401 687 0.94
402 2 0.00
403 38 0.05
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (401 bp):
AATTTGATCTGTTCCACTCCTGCTCAGCGAAGATAAGATCTAGTATTTAGCCTGCTCCACTCCTG
CTCAGTGAAGATAAGGCTGATGATTTGAATCTGCTCCATTGCCGATACATGGAGATAAGATTCAT
CAAAATTTGATCTGCTCCGCTCCTGCTCAGCAAAGATAAGATCTAATATTTAGCCTGCTCCACTC
CTGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCAATACATGGAGATAAGACT
TGCTAAAATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTGCTC
CACTCCTGCTCAGTGAAGATAAGGCTGATGGCTGAAATTTACTCCATTGCCGATACATGAAGGTT
AGATTCACCAA
Found at i:36900843 original size:44 final size:45
Alignment explanation
Indices: 36900739--36900843 Score: 117
Period size: 45 Copynumber: 2.4 Consensus size: 45
36900729 AAAATTTGAT
* * * *
36900739 CTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGC
1 CTGCTCCACTACTGCTCAGTGAAGATAAGAGCTGATATGTTTAGC
*
36900784 CTGCTCCACTCCTGCTCAGTGAAGATAA-AGCTGATGAT-TTTAGC
1 CTGCTCCACTACTGCTCAGTGAAGATAAGAGCTGAT-ATGTTTAGC
*
36900828 CTGTTACC-CTACTGCT
1 CTGCT-CCACTACTGCT
36900844 TAGGGGGTTA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
44 22 0.42
45 31 0.58
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (45 bp):
CTGCTCCACTACTGCTCAGTGAAGATAAGAGCTGATATGTTTAGC
Found at i:36901008 original size:87 final size:87
Alignment explanation
Indices: 36900825--36901287 Score: 377
Period size: 87 Copynumber: 5.4 Consensus size: 87
36900815 TGATGATTTT
* *
36900825 AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGC--G-AGTCTTCGACCTGCTCTACCACTGCTT-
1 AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCA-TCTTCGATCTGCTCTACTACTGCTTA
** *
36900886 GGCGAGCCCAA-ATCTGTAA-ATTTT
65 GG-GAG-ATAAGATCTGTAATA-TTC
* * *
36900910 AGCCTGTTACCCTAGTGCTTAGGGGGTTAAGGCTTGCATCTTTGATCTGCTCTACTATTGCTTAG
1 AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCATCTTCGATCTGCTCTACTACTGCTTAG
*
36900975 GGAGATAAGATCTGTAATCTTC
66 GGAGATAAGATCTGTAATATTC
* * * * * * * **
36900997 AGCTTGTTACCCTATTGCTTAGGGAGTTAAAGCTTACTGTCTTCGATCTGCTCCACTACTATTTA
1 AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGC-ATCTTCGATCTGCTCTACTACTGCTTA
*
36901062 GGG-G---AGATCTGT-ATTTTC
65 GGGAGATAAGATCTGTAATATTC
* * * *
36901080 TAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTG-TTGCCTTCGATCT-ATTTCCCTACTGC
1 -AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCAT--CTTCGATCTGCTCT-ACTACTGC
* *
36901143 TTAGGGTGATAAGATCCGTAA-ATTC
62 TTAGGGAGATAAGATCTGTAATATTC
* * * * * *
36901168 -GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTAT-CACCTTCGATCTGTTTCT-CTACTAC
1 AG-CCTGTTACCCTACTGCTTAGGGGGTTAAG-GCT-TGCATCTTCGATCTG-CTCTACTACTGC
* *
36901230 TTAGGGGGTTAAGATCTGTAA-ATTC
62 TTAGGGAGATAAGATCTGTAATATTC
*
36901255 AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
1 AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGC
36901288 CTGTGGATTC
Statistics
Matches: 305, Mismatches: 50, Indels: 45
0.76 0.12 0.11
Matches are distributed among these distances:
82 1 0.00
83 6 0.02
84 59 0.19
85 33 0.11
86 4 0.01
87 158 0.52
88 40 0.13
89 4 0.01
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (87 bp):
AGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCATCTTCGATCTGCTCTACTACTGCTTAG
GGAGATAAGATCTGTAATATTC
Found at i:36901180 original size:43 final size:43
Alignment explanation
Indices: 36901084--36901285 Score: 201
Period size: 43 Copynumber: 4.7 Consensus size: 43
36901074 ATTTTCTAGC
* * ***
36901084 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGTTGCCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATC-TG-TAAATTCGAT
* * * *
36901128 CTATTTCCCTACTGCTTAGGGTGATAAGATCCGTAAATTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCGAT
* **
36901171 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTATCACCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCGAT
* * *
36901215 CTGTTTCTCTACTACTTAGGGGGTTAAGATCTGTAAATTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCGA-T
* *
36901258 CTGTTACCCTACTGCTTAGGGGTTTAAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAG
36901286 GCCTGTGGAT
Statistics
Matches: 129, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
42 1 0.01
43 64 0.50
44 63 0.49
45 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (43 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCGAT
Found at i:36901189 original size:171 final size:173
Alignment explanation
Indices: 36900897--36901287 Score: 424
Period size: 171 Copynumber: 2.3 Consensus size: 173
36900887 GCGAGCCCAA
* * *
36900897 ATCTGTAAATTTTAGCCTGTTACCCTAGTGCTTAGGGGGTTAAGGCTTGCATCTTTGATCTGCTC
1 ATCTGTAAATTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCATCTTCGATCTGCTC
* * * *
36900962 TACTATTGCTTAGGGAGATAAGATCTGTAATCTTCAGCTTGTTACCCTATTGCTTAGGGAGTTAA
66 TACTACTGCTTAGGGAGATAAGATCCGTAATATTCAGCTTGTTACCCTACTGCTTAGGGAGTTAA
*
36901027 -AGCT-T-ACTGTCTTCGATCTGCTCCACTACTATTTA-GGGG-AG
131 GAGCTATCAC---CTTCGATCTGCTCCACTACTACTTAGGGGGTAG
** * *
36901068 ATCTGTATTTTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTG-TTGCCTTCGATCT-A
1 ATCTGTAAATTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCAT--CTTCGATCTGC
* * * * * *
36901131 TTTCCCTACTGCTTAGGGTGATAAGATCCGTAA-ATTC-GATCTGTTTCCCTACTGCTTAGGGGG
64 TCT-ACTACTGCTTAGGGAGATAAGATCCGTAATATTCAGCT-TGTTACCCTACTGCTTAGGGAG
* * * *
36901194 TTAAGATCTATCACCTTCGATCTGTTTCTCTACTACTTAGGGGGTTAAG
127 TTAAGAGCTATCACCTTCGATCTGCTCCACTACTACTTAGGGGG-T-AG
*
36901243 ATCTGTAAATTC-AGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
1 ATCTGTAAATTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGC
36901288 CTGTGGATTC
Statistics
Matches: 184, Mismatches: 25, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
170 3 0.02
171 94 0.51
172 40 0.22
173 1 0.01
174 34 0.18
175 12 0.07
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (173 bp):
ATCTGTAAATTCTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGCATCTTCGATCTGCTC
TACTACTGCTTAGGGAGATAAGATCCGTAATATTCAGCTTGTTACCCTACTGCTTAGGGAGTTAA
GAGCTATCACCTTCGATCTGCTCCACTACTACTTAGGGGGTAG
Found at i:36902545 original size:19 final size:18
Alignment explanation
Indices: 36902521--36902557 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
36902511 TGGCCTCTCC
*
36902521 TGTTTTTTTTTCTTTTTTG
1 TGTTTTTTCTT-TTTTTTG
36902540 TGTTTTTTCTTTTTTTTG
1 TGTTTTTTCTTTTTTTTG
36902558 AAACTTCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.00, C:0.05, G:0.11, T:0.84
Consensus pattern (18 bp):
TGTTTTTTCTTTTTTTTG
Found at i:36903169 original size:19 final size:19
Alignment explanation
Indices: 36903145--36903187 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
36903135 TTTTGGCATA
*
36903145 TTTTTTTCTCTTTTT-TTAT
1 TTTTTTTCTATTTTTCTT-T
36903164 TTTTTTTCTATTTTTCTTT
1 TTTTTTTCTATTTTTCTTT
36903183 TTTTT
1 TTTTT
36903188 GTGAATTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 20 0.91
20 2 0.09
ACGTcount: A:0.05, C:0.09, G:0.00, T:0.86
Consensus pattern (19 bp):
TTTTTTTCTATTTTTCTTT
Found at i:36903186 original size:17 final size:17
Alignment explanation
Indices: 36903143--36903187 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
36903133 TCTTTTGGCA
*
36903143 TATTTTTTTCTCTTTTTT
1 TATTTTTTT-TCTATTTT
36903161 TATTTTTTTTCTATTTT
1 TATTTTTTTTCTATTTT
*
36903178 TCTTTTTTTT
1 TATTTTTTTT
36903188 GTGAATTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 16 0.64
18 9 0.36
ACGTcount: A:0.07, C:0.09, G:0.00, T:0.84
Consensus pattern (17 bp):
TATTTTTTTTCTATTTT
Found at i:36905533 original size:9 final size:10
Alignment explanation
Indices: 36905518--36905571 Score: 55
Period size: 8 Copynumber: 5.8 Consensus size: 10
36905508 GTGAAAATCA
36905518 AATGCAAATG
1 AATGCAAATG
36905528 -ATGC-AATG
1 AATGCAAATG
36905536 -ATGC-AATG
1 AATGCAAATG
36905544 TAATGCAAATG
1 -AATGCAAATG
*
36905555 CATG-AAATG
1 AATGCAAATG
36905564 AATGCAAA
1 AATGCAAA
36905572 AGAAGATGTC
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
8 12 0.32
9 12 0.32
10 10 0.26
11 4 0.11
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.22
Consensus pattern (10 bp):
AATGCAAATG
Found at i:36905567 original size:19 final size:18
Alignment explanation
Indices: 36905523--36905571 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
36905513 AATCAAATGC
36905523 AAATG-ATGC-AATGATG
1 AAATGAATGCAAATGATG
*
36905539 CAATGTAATGCAAATGCATG
1 AAATG-AATGCAAATG-ATG
36905559 AAATGAATGCAAA
1 AAATGAATGCAAA
36905572 AGAAGATGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 4 0.15
18 4 0.15
19 12 0.44
20 7 0.26
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.22
Consensus pattern (18 bp):
AAATGAATGCAAATGATG
Found at i:36907122 original size:126 final size:126
Alignment explanation
Indices: 36906896--36907123 Score: 350
Period size: 126 Copynumber: 1.8 Consensus size: 126
36906886 GGATATTCGA
* * *
36906896 ATATTCAAAACAAACAAAGAAAGCGAAGCCCAGTACGTTAGGGCACGATTCTTCGAATTCTTTAA
1 ATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGAGCACGATCCTTCGAATTCTTTAA
* * * **
36906961 ATACCGAATATTGTCTTTATTTTGAAAAATTTTGAGAGTGAACCAGTAAAGGGATGCTCTG
66 ATACCGAACATTGCCATTATTTTGAAAAAAATTGAGAGTGAACCAGTAAAGGGATGCTCTG
* *
36907022 ATATTCAAAATAAACAAAGAAAGCGAAACCCAGTACGTTAGAGCACGATCCTTTGAATTCTTTAA
1 ATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGAGCACGATCCTTCGAATTCTTTAA
36907087 ATACCGAACATTGCCATTATTTT-AAAAACAATTGAGA
66 ATACCGAACATTGCCATTATTTTGAAAAA-AATTGAGA
36907124 ATAAATCTGT
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
125 5 0.05
126 86 0.95
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (126 bp):
ATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGAGCACGATCCTTCGAATTCTTTAA
ATACCGAACATTGCCATTATTTTGAAAAAAATTGAGAGTGAACCAGTAAAGGGATGCTCTG
Found at i:36907667 original size:18 final size:18
Alignment explanation
Indices: 36907644--36907685 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
36907634 ATAATGCTAC
*
36907644 AATAACCA-TAAACATAGT
1 AATAACCATTAAA-ATAAT
*
36907662 AATAACGATTAAAATAAT
1 AATAACCATTAAAATAAT
36907680 AATAAC
1 AATAAC
36907686 AACAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.24
Consensus pattern (18 bp):
AATAACCATTAAAATAAT
Done.