Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 131 of 153
Found at i:41229940 original size:86 final size:86
Alignment explanation
Indices: 41229845--41230095 Score: 484
Period size: 86 Copynumber: 2.9 Consensus size: 86
41229835 AAATATATAA
* *
41229845 ATTATTCTTTATGTAAGAAAATAAAACATGTAAAACAACATAAAAATGTCAAAATAACATCAACT
1 ATTATTCTTTACGTAAGAAAATAAAACACGTAAAACAACATAAAAATGTCAAAATAACATCAACT
41229910 TTTCTAATGATTTTTAATTAT
66 TTTCTAATGATTTTTAATTAT
41229931 ATTATTCTTTACGTAAGAAAATAAAACACGTAAAACAACATAAAAATGTCAAAATAACATCAACT
1 ATTATTCTTTACGTAAGAAAATAAAACACGTAAAACAACATAAAAATGTCAAAATAACATCAACT
41229996 TTTCTAATGATTTTTAATTAT
66 TTTCTAATGATTTTTAATTAT
41230017 ATTATTCTTTACGTAAGAAAATAAAACACGTAAAACAACATAAAAATGTCAAAATAACATCAACT
1 ATTATTCTTTACGTAAGAAAATAAAACACGTAAAACAACATAAAAATGTCAAAATAACATCAACT
41230082 TTTCTAATGATTTT
66 TTTCTAATGATTTT
41230096 CAAAGGAATC
Statistics
Matches: 163, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 163 1.00
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.34
Consensus pattern (86 bp):
ATTATTCTTTACGTAAGAAAATAAAACACGTAAAACAACATAAAAATGTCAAAATAACATCAACT
TTTCTAATGATTTTTAATTAT
Found at i:41233604 original size:37 final size:37
Alignment explanation
Indices: 41233554--41233630 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
41233544 AAATCGAGAA
*
41233554 GTAAAGCTAGGATCTCTACCTAAAATAATTGAAATTG
1 GTAAAGCGAGGATCTCTACCTAAAATAATTGAAATTG
41233591 GTAAAGCGAGGATCTCTACCTAAAATAATTGAAATTG
1 GTAAAGCGAGGATCTCTACCTAAAATAATTGAAATTG
41233628 GTA
1 GTA
41233631 CCCCATGAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (37 bp):
GTAAAGCGAGGATCTCTACCTAAAATAATTGAAATTG
Found at i:41234291 original size:45 final size:45
Alignment explanation
Indices: 41234228--41234313 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
41234218 CATCATCAAA
41234228 CAAACTTAGGCGAGCAAACATCACCCTCAAATCAGACATTGCCCT
1 CAAACTTAGGCGAGCAAACATCACCCTCAAATCAGACATTGCCCT
* *
41234273 CAAACTTAGGCGAGCAAACATCGCCTTCAAATCAGACATTG
1 CAAACTTAGGCGAGCAAACATCACCCTCAAATCAGACATTG
41234314 GCCTTACTAG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.36, C:0.30, G:0.15, T:0.19
Consensus pattern (45 bp):
CAAACTTAGGCGAGCAAACATCACCCTCAAATCAGACATTGCCCT
Found at i:41239393 original size:21 final size:20
Alignment explanation
Indices: 41239355--41239406 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 20
41239345 TAAATTAAAC
*
41239355 TAAAAATATTACTAAATTTATTA
1 TAAAAA-ATTACTAAA-TT-CTA
41239378 TAAAAAATTA-TAAATTCTA
1 TAAAAAATTACTAAATTCTA
41239397 TAAAAAATTA
1 TAAAAAATTA
41239407 AATTAACAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 12 0.43
20 2 0.07
21 4 0.14
22 4 0.14
23 6 0.21
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (20 bp):
TAAAAAATTACTAAATTCTA
Found at i:41239806 original size:7 final size:7
Alignment explanation
Indices: 41239794--41239818 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
41239784 ATTTTAATCC
41239794 CTAAACT
1 CTAAACT
41239801 CTAAACT
1 CTAAACT
41239808 CTAAACT
1 CTAAACT
41239815 CTAA
1 CTAA
41239819 CAATATACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (7 bp):
CTAAACT
Found at i:41244551 original size:23 final size:25
Alignment explanation
Indices: 41244507--41244556 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 25
41244497 ATATACATAT
* *
41244507 ATTTTTAATATATATATCAATATAC
1 ATTTTTAATATATATATAAATACAC
*
41244532 ATTTTTAAT-T-TTTATAAATACAC
1 ATTTTTAATATATATATAAATACAC
41244555 AT
1 AT
41244557 ATATATGCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 12 0.55
24 1 0.05
25 9 0.41
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (25 bp):
ATTTTTAATATATATATAAATACAC
Found at i:41244700 original size:4 final size:4
Alignment explanation
Indices: 41244691--41244715 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
41244681 ATTCATCTCT
41244691 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
41244716 CATTATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:41246105 original size:29 final size:29
Alignment explanation
Indices: 41246059--41246116 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
41246049 GGAGATATGT
*
41246059 TTACAGAGTAATGGAATAAAGTGAAGAAG
1 TTACAGAGTAATGAAATAAAGTGAAGAAG
41246088 TTACAGAGTAATGAAATAAAGTGAAGAAG
1 TTACAGAGTAATGAAATAAAGTGAAGAAG
41246117 ATGAAGAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.26, T:0.21
Consensus pattern (29 bp):
TTACAGAGTAATGAAATAAAGTGAAGAAG
Found at i:41246124 original size:29 final size:29
Alignment explanation
Indices: 41246061--41246124 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
41246051 AGATATGTTT
* *
41246061 ACAGAGTAATGGAATAAAGTGAAGAAGTT
1 ACAGAGTAATGAAATAAAGTGAAGAAGTG
41246090 ACAGAGTAATGAAATAAAGTGAAGAAGATG
1 ACAGAGTAATGAAATAAAGTGAAGAAG-TG
41246120 A-AGAG
1 ACAGAG
41246125 AGGAAGAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 30 0.94
30 2 0.06
ACGTcount: A:0.52, C:0.03, G:0.28, T:0.17
Consensus pattern (29 bp):
ACAGAGTAATGAAATAAAGTGAAGAAGTG
Found at i:41247433 original size:62 final size:61
Alignment explanation
Indices: 41247361--41247488 Score: 195
Period size: 62 Copynumber: 2.1 Consensus size: 61
41247351 CCAGTGTTGG
* * *
41247361 TGGTGTTTCTTTCCATTGATTTTTTTTGGCATGTTCCTTGGCTTTCTAAGGCAA-CTTTAGT
1 TGGTGTTTCTTTCCATTGATATTTTTTGGCACGTTCCTTGGCTTTCTAAAG-AAGCTTTAGT
*
41247422 TGGTGTCTTCTTTCCATTGATATTTTTTGGCACGTTTCTTGGCTTTCTAAAGAAGCTTTAGT
1 TGGTGT-TTCTTTCCATTGATATTTTTTGGCACGTTCCTTGGCTTTCTAAAGAAGCTTTAGT
41247484 TGGTG
1 TGGTG
41247489 CTTTAGTGGC
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
61 8 0.13
62 53 0.87
ACGTcount: A:0.14, C:0.16, G:0.21, T:0.49
Consensus pattern (61 bp):
TGGTGTTTCTTTCCATTGATATTTTTTGGCACGTTCCTTGGCTTTCTAAAGAAGCTTTAGT
Found at i:41249985 original size:109 final size:109
Alignment explanation
Indices: 41249796--41250210 Score: 584
Period size: 109 Copynumber: 3.8 Consensus size: 109
41249786 ATATAAGAGA
* * * * *
41249796 ATATTTGGCTATTTGGTCCAAC--GAAGAATCGAAACCCAGCGCATTAGGGCACGTTTTCTCGAG
1 ATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAACACATTAGGGCACGTTTTCTCGAA
*
41249859 TTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTGAAAGG
66 TTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAAAGG
* *
41249903 ATATTTGGCTATTTGGTCGAACGAGAAAAATCGAAACCCAACACATTAGGGCACGTTTTCTCAAA
1 ATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAACACATTAGGGCACGTTTTCTCGAA
* *
41249968 TTTCCAAACGCAAAACATTGCCTTATTTTGAATTTTTTGAAATG
66 TTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAAAGG
** * * * * *
41250012 ATATTTCACTATTTGGTTGAATAAGAAAAATTGAATCCCAGCACATTAGGGCACGTTTTCTCGAA
1 ATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAACACATTAGGGCACGTTTTCTCGAA
* *
41250077 TTTCCAAACGCAAAATATTGCCTTATTTTGAAATTTTTGAGAGG
66 TTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAAAGG
* * ** *
41250121 GTATTTGGCTATTTGGTTGAACAAGAAAAATC-AAATCCCAACACATTAGGGCTTGTTTTCTCCA
1 ATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAA-CCCAACACATTAGGGCACGTTTTCTCGA
41250185 ATTTCCAAACGCAAAACATTGCCTTA
65 ATTTCCAAACGCAAAACATTGCCTTA
41250211 CTTATTTTTT
Statistics
Matches: 272, Mismatches: 33, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
107 21 0.08
108 2 0.01
109 249 0.92
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (109 bp):
ATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAACACATTAGGGCACGTTTTCTCGAA
TTTCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAAAGG
Found at i:41250828 original size:39 final size:41
Alignment explanation
Indices: 41250738--41250818 Score: 112
Period size: 39 Copynumber: 2.0 Consensus size: 41
41250728 ATATATAAGT
*
41250738 AAGCATATACATATATACATATGTAACTATCATAAAATATAAA
1 AAGCATATACATAGATA-ATATGTAAC-ATCATAAAATATAAA
*
41250781 AAGTATATACATAGAT-ATATGTAA-ATCATAAAATATAA
1 AAGCATATACATAGATAATATGTAACATCATAAAATATAA
41250819 TGAACATATA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
39 14 0.39
41 8 0.22
43 14 0.39
ACGTcount: A:0.54, C:0.09, G:0.06, T:0.31
Consensus pattern (41 bp):
AAGCATATACATAGATAATATGTAACATCATAAAATATAAA
Found at i:41252714 original size:44 final size:44
Alignment explanation
Indices: 41252654--41252808 Score: 132
Period size: 44 Copynumber: 3.5 Consensus size: 44
41252644 CGGTCTGTTA
* * * *
41252654 CACTACAACTTTAGGGAGATGAG-CTCAGTAGCTTCAGTCTGCTC
1 CACTGCAACTTCAGGGAGATAAGACTCA-TAGCTTCAGTCTACTC
* * *
41252698 CTCTGCAACTTCAGGGAGATAAGACTCATATCTTTAGTCTACTC
1 CACTGCAACTTCAGGGAGATAAGACTCATAGCTTCAGTCTACTC
* * * * * ** *
41252742 CACTGCAACTTCATGGAAATAAAACTTATATCTTCAACCTGCTC
1 CACTGCAACTTCAGGGAGATAAGACTCATAGCTTCAGTCTACTC
** *
41252786 CACCACAACTTTAGGGAGATAAG
1 CACTGCAACTTCAGGGAGATAAG
41252809 GCTTGTCATG
Statistics
Matches: 88, Mismatches: 22, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
44 84 0.95
45 4 0.05
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (44 bp):
CACTGCAACTTCAGGGAGATAAGACTCATAGCTTCAGTCTACTC
Found at i:41253149 original size:147 final size:148
Alignment explanation
Indices: 41252996--41253280 Score: 428
Period size: 147 Copynumber: 1.9 Consensus size: 148
41252986 GACCTGTAGC
* *
41252996 TTCAATAAAGTTTGATGTGATCTATTCTACTGTAACTTCAGAAAGATAAGATCCATCATTTTGAC
1 TTCAATAAAGTTTGATGTGATCCATTCTACTGCAACTTCAGAAAGATAAGATCCATCATTTTGAC
* * *
41253061 CCATTCCACTGCAACTTCAGGAAAATAGGACTCGTATCTTCAACTTGCCCCACTGCAAATT-TAG
66 CCACTCCACTGCAACTTCAGGAAAATAGGACTCATATCTTCAACTTGCCCCACTGCAAATTCAAG
41253125 GGGATAAGACTTGTAATT
131 GGGATAAGACTTGTAATT
* * *
41253143 TTCAATAAAGTTTGATGTGATCCATTCTACTGCAACTTTAGAGAGATAAGATCCATCGTTTTGAC
1 TTCAATAAAGTTTGATGTGATCCATTCTACTGCAACTTCAGAAAGATAAGATCCATCATTTTGAC
* * * * * * *
41253208 CCGCTCCACTGCAACTTCAGGGAGATAGGACTTATATCTTTAACTTGCCCCACTGGAACTTCAAG
66 CCACTCCACTGCAACTTCAGGAAAATAGGACTCATATCTTCAACTTGCCCCACTGCAAATTCAAG
41253273 GGGATAAG
131 GGGATAAG
41253281 TTTAGTAACT
Statistics
Matches: 122, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
147 112 0.92
148 10 0.08
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (148 bp):
TTCAATAAAGTTTGATGTGATCCATTCTACTGCAACTTCAGAAAGATAAGATCCATCATTTTGAC
CCACTCCACTGCAACTTCAGGAAAATAGGACTCATATCTTCAACTTGCCCCACTGCAAATTCAAG
GGGATAAGACTTGTAATT
Found at i:41253312 original size:44 final size:45
Alignment explanation
Indices: 41253259--41253376 Score: 145
Period size: 44 Copynumber: 2.7 Consensus size: 45
41253249 AACTTGCCCC
* * *
41253259 ACTGGAACTTCAAG-GGGATAA-GTTTAGTAACTTCAACCTACTCT
1 ACTGCAACTTCAAGAGAGACAAGGTTT-GTAACTTCAACCTACTCT
* *
41253303 ACTGCAACTTC-AGAGAGACAAGGTTTGTTATTTCAACCTACTCT
1 ACTGCAACTTCAAGAGAGACAAGGTTTGTAACTTCAACCTACTCT
*
41253347 ACTGCAACTTC-AGAGAGATAAGGTTTGTAA
1 ACTGCAACTTCAAGAGAGACAAGGTTTGTAA
41253377 TTTATTGCTT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
43 2 0.03
44 59 0.91
45 4 0.06
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (45 bp):
ACTGCAACTTCAAGAGAGACAAGGTTTGTAACTTCAACCTACTCT
Found at i:41253825 original size:87 final size:87
Alignment explanation
Indices: 41253546--41253908 Score: 365
Period size: 86 Copynumber: 4.1 Consensus size: 87
41253536 CTGCTTAGGG
* * * * * **
41253546 AGACAGGATCTGCAATCTTCAACTTACTCCGCTGCTGCTCAGAGAGATAAGG-CTGGTGTTTTCG
1 AGACAAGATCTGCAATCTTCAACCTACTCCACTGCTGCTCAGGGAGAT-AGGACTAGT-TTTTTT
*
41253610 ATCTGCTTCACTGCCAGTACAGAA
64 ATCTGCTTCACTGCCAGTACAGGA
** * *
41253634 AGACAAGATCTATAATCTTCGACCTACTCCACTGCTGCTCAAGGAGATAGGACTAG-TTTTTTAT
1 AGACAAGATCTGCAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTAGTTTTTTTAT
* *
41253698 CTGTTTCACTGCCAGTATAGGA
66 CTGCTTCACTGCCAGTACAGGA
*
41253720 AGACAAGATCTGCAATCTTCAACCTACTCCACTGCTGCTTAGGGAGATAGGACTAGTTTTTTTAT
1 AGACAAGATCTGCAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTAGTTTTTTTAT
*
41253785 CTACTTCACTGCCAGTACAGGA
66 CTGCTTCACTGCCAGTACAGGA
* * ** ** * * *
41253807 AGATAAGATCTG-ATATCTTTAGTCTACTCCACTGCAAACTCAGGGAGGTCA-GACTGGTGTCTT
1 AGACAAGATCTGCA-ATCTTCAACCTACTCCACTGC-TGCTCAGGGAGAT-AGGACTAGT-TTTT
** * * * *
41253870 CGATCTGCTTCGCTGTCGGTACAGTA
62 TTATCTGCTTCACTGCCAGTACAGGA
41253896 AGACAAGATCTGC
1 AGACAAGATCTGC
41253909 TGCTTGTAGT
Statistics
Matches: 228, Mismatches: 40, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
86 77 0.34
87 59 0.26
88 58 0.25
89 34 0.15
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (87 bp):
AGACAAGATCTGCAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTAGTTTTTTTAT
CTGCTTCACTGCCAGTACAGGA
Found at i:41254936 original size:97 final size:97
Alignment explanation
Indices: 41254766--41255141 Score: 610
Period size: 97 Copynumber: 3.9 Consensus size: 97
41254756 TTGAATAAGG
* * *
41254766 TTATCACAATGGACAAGATGAAATTTTATTGAGAACAAAGCTCG-CATGGAATAAATTAATCCAG
1 TTATCACAATGGATAAGATGAAATTTTATTGAGAACAAAGCTCGAAAT-GAATAAATTAATCAAG
* * *
41254830 ATAGAAAATTTTGCTAAGATAAGATGAAAAAGA
65 ATAGCAAATTTTGCTAAGATAAAATAAAAAAGA
* *
41254863 TTATCACAATAGATAAGATGAAATTTTATTGAGAACAAAACTCGAAATGAATAAATTAATCAAGA
1 TTATCACAATGGATAAGATGAAATTTTATTGAGAACAAAGCTCGAAATGAATAAATTAATCAAGA
41254928 TAGCAAATTTTGCTAAGATAAAATAAAAAAGA
66 TAGCAAATTTTGCTAAGATAAAATAAAAAAGA
* * *
41254960 TTATCATAATGGATAAGATGAAATTTTATTGAGAGCACAGCTCGAAATGAATAAATTAATCAAGA
1 TTATCACAATGGATAAGATGAAATTTTATTGAGAACAAAGCTCGAAATGAATAAATTAATCAAGA
41255025 TAGCAAATTTTGCTAAGATAAAATAAAAAAGA
66 TAGCAAATTTTGCTAAGATAAAATAAAAAAGA
* * *
41255057 TTATCATAATGGATAAGATGAAATTTTATTGAGAGCACAGCTCGAAATGAATAAATTAATCAAGA
1 TTATCACAATGGATAAGATGAAATTTTATTGAGAACAAAGCTCGAAATGAATAAATTAATCAAGA
41255122 TAGCAAATTTTGCTAAGATA
66 TAGCAAATTTTGCTAAGATA
41255142 CGAAAAGAAT
Statistics
Matches: 265, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
97 263 0.99
98 2 0.01
ACGTcount: A:0.48, C:0.09, G:0.15, T:0.28
Consensus pattern (97 bp):
TTATCACAATGGATAAGATGAAATTTTATTGAGAACAAAGCTCGAAATGAATAAATTAATCAAGA
TAGCAAATTTTGCTAAGATAAAATAAAAAAGA
Found at i:41255444 original size:19 final size:18
Alignment explanation
Indices: 41255422--41255497 Score: 80
Period size: 19 Copynumber: 3.9 Consensus size: 18
41255412 CCTTGGACTC
41255422 TCTTTTTTCCTTTTCTTTT
1 TCTTTTTT-CTTTTCTTTT
41255441 TCTTCTTTTCTTTTCTTTT
1 TCTT-TTTTCTTTTCTTTT
*
41255460 CCTTTTTTTCTTTTCGTTTT
1 TC-TTTTTTCTTTTC-TTTT
* *
41255480 TTTTTTGTTTTTTTCTTT
1 TCTTTT-TTCTTTTCTTT
41255498 CCTTTTTTTG
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
19 32 0.65
20 17 0.35
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (18 bp):
TCTTTTTTCTTTTCTTTT
Found at i:41255451 original size:5 final size:5
Alignment explanation
Indices: 41255426--41255503 Score: 65
Period size: 5 Copynumber: 15.8 Consensus size: 5
41255416 GGACTCTCTT
* *
41255426 TTTTCC TTTTC TTTT- TCTTC TTTTC TTTTC TTTTC CTTT- TTTTC TTTTC
1 TTTT-C TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
* *
41255475 GTTTT- TTTT- TTGTTT TTTTC TTTCC TTTT
1 -TTTTC TTTTC TT-TTC TTTTC TTTTC TTTT
41255504 TTTGTTTTTT
Statistics
Matches: 60, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
4 12 0.20
5 38 0.63
6 10 0.17
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:41255504 original size:24 final size:24
Alignment explanation
Indices: 41255423--41255515 Score: 89
Period size: 25 Copynumber: 3.8 Consensus size: 24
41255413 CTTGGACTCT
*
41255423 CTTTTTTCCTTTTCTTTTTCTTCTTTT
1 CTTTTTT--TTTTCTTTTT-TTCTTTC
* *
41255450 CTTTTCTTTTCCTTTTTTTCTTTTC
1 CTTTTTTTTTTCTTTTTTTC-TTTC
* *
41255475 GTTTTTTTTTTGTTTTTTTCTTTC
1 CTTTTTTTTTTCTTTTTTTCTTTC
*
41255499 CTTTTTTTGTT-TTTTTT
1 CTTTTTTTTTTCTTTTTT
41255516 GAACATTTTT
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
23 6 0.11
24 16 0.29
25 28 0.50
27 6 0.11
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (24 bp):
CTTTTTTTTTTCTTTTTTTCTTTC
Found at i:41255506 original size:38 final size:38
Alignment explanation
Indices: 41255423--41255515 Score: 111
Period size: 38 Copynumber: 2.5 Consensus size: 38
41255413 CTTGGACTCT
*
41255423 CTTTTTTCCTTTTCTTTTTCTTCTTTTCTTTTCTTTTC
1 CTTTTTTTCTTTTCTTTTTCTTCTTTTCTTTTCTTTTC
* *
41255461 CTTTTTTTCTTTTCGTTTTT-TTTTTGTTTTTTTC-TTTC
1 CTTTTTTTCTTTTC-TTTTTCTTCTT-TTCTTTTCTTTTC
*
41255499 CTTTTTTTGTTTT-TTTT
1 CTTTTTTTCTTTTCTTTT
41255516 GAACATTTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
36 4 0.08
38 33 0.67
39 12 0.24
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (38 bp):
CTTTTTTTCTTTTCTTTTTCTTCTTTTCTTTTCTTTTC
Found at i:41259576 original size:109 final size:109
Alignment explanation
Indices: 41259417--41259829 Score: 564
Period size: 109 Copynumber: 3.8 Consensus size: 109
41259407 AAGATATAAG
* * * * *
41259417 AGGATATTTGGCTATTTGGTCCAAC--GAAGAATTGAAACCCAGCACATTAGGGCATGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAACACATTAGGGCACGTTTTCTC
* *
41259480 GAGTTTCCAAACGCAAAACATTGTCTTATTTTAAAATTTTTGAA
66 GAATTTCCAAACGCAAAACATTGTCTTATTTTGAAATTTTTGAA
* * ** *
41259524 AAGATATTTGGCTATTTGGACGAATGAGAAAAATCGAAACCCAACACATTAGGGCACGCTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAACACATTAGGGCACGTTTTCTC
* * * *
41259589 AAATTTTCAAACGCAAAACATTGCCTTATTTTGAAGTTTTTGAA
66 GAATTTCCAAACGCAAAACATTGTCTTATTTTGAAATTTTTGAA
* * * * *
41259633 AGGATATTTCGCTATTTGGTTGAACAAGAAAAAT-TAAATCCCAGCACATTAGGGCACATTTTCT
1 AGGATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAA-CCCAACACATTAGGGCACGTTTTCT
41259697 CGAATTTCCAAACGCAAAACATT-TCCTTATTTTGAAATTTTTGAA
65 CGAATTTCCAAACGCAAAACATTGT-CTTATTTTGAAATTTTTGAA
* * *
41259742 AGGGTATTTGGCTATTTGGTTGAACAAGAAAAATCGAATCCCAACACATTAGGGCACGTTTTCTC
1 AGGATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAACACATTAGGGCACGTTTTCTC
41259807 GAATTTCCAAACGCAAAACATTG
66 GAATTTCCAAACGCAAAACATTG
41259830 CATTACTTAT
Statistics
Matches: 265, Mismatches: 35, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
107 21 0.08
108 3 0.01
109 239 0.90
110 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (109 bp):
AGGATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCCAACACATTAGGGCACGTTTTCTC
GAATTTCCAAACGCAAAACATTGTCTTATTTTGAAATTTTTGAA
Found at i:41260447 original size:39 final size:40
Alignment explanation
Indices: 41260357--41260447 Score: 114
Period size: 39 Copynumber: 2.2 Consensus size: 40
41260347 ATATATAAGT
*
41260357 AAACATATACATATATACGTATGTAACTATCATAAAATATAA
1 AAACATATACATAGATAC-TATGTAAC-ATCATAAAATATAA
*
41260399 AAAGTATATACATAGATA-TATGTAA-ATCATAAAATATAA
1 AAA-CATATACATAGATACTATGTAACATCATAAAATATAA
41260438 AGAACATATA
1 A-AACATATA
41260448 TAAAATACAT
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
39 20 0.45
40 2 0.05
41 7 0.16
42 3 0.07
43 12 0.27
ACGTcount: A:0.55, C:0.09, G:0.07, T:0.30
Consensus pattern (40 bp):
AAACATATACATAGATACTATGTAACATCATAAAATATAA
Found at i:41260613 original size:39 final size:39
Alignment explanation
Indices: 41260556--41260662 Score: 117
Period size: 39 Copynumber: 2.7 Consensus size: 39
41260546 TAAGAAATAT
* * *
41260556 AAAAATATATATAGGTATGTATATGTATA-TATATATTAC
1 AAAAATATATATAAGTATGTATATATATATTATA-AGTAC
* * * * *
41260595 AAAAATGTATGTATGTATGTATATATAAATTATAAGTAT
1 AAAAATATATATAAGTATGTATATATATATTATAAGTAC
*
41260634 AAAAATCTATATAAGTATGTATATATATA
1 AAAAATATATATAAGTATGTATATATATA
41260663 AATCAAAGGT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
39 52 0.93
40 4 0.07
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.40
Consensus pattern (39 bp):
AAAAATATATATAAGTATGTATATATATATTATAAGTAC
Found at i:41260954 original size:56 final size:56
Alignment explanation
Indices: 41260863--41260971 Score: 209
Period size: 56 Copynumber: 1.9 Consensus size: 56
41260853 GGAGTGGTGC
41260863 AGGACCGAAAAGAGGTACGTTTAAGGAAGGAGGGACCAACTAGGCAATATTTCCAT
1 AGGACCGAAAAGAGGTACGTTTAAGGAAGGAGGGACCAACTAGGCAATATTTCCAT
*
41260919 AGGATCGAAAAGAGGTACGTTTAAGGAAGGAGGGACCAACTAGGCAATATTTC
1 AGGACCGAAAAGAGGTACGTTTAAGGAAGGAGGGACCAACTAGGCAATATTTC
41260972 TAGCCCTCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.38, C:0.15, G:0.29, T:0.18
Consensus pattern (56 bp):
AGGACCGAAAAGAGGTACGTTTAAGGAAGGAGGGACCAACTAGGCAATATTTCCAT
Found at i:41262662 original size:28 final size:28
Alignment explanation
Indices: 41262622--41262677 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
41262612 AAAAAACTCG
41262622 GTTATCCATATTATTTTTGTAATTGCTA
1 GTTATCCATATTATTTTTGTAATTGCTA
41262650 GTTATCCATATTATTTTTGTAATTGCTA
1 GTTATCCATATTATTTTTGTAATTGCTA
41262678 TTGTTGGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.11, G:0.11, T:0.54
Consensus pattern (28 bp):
GTTATCCATATTATTTTTGTAATTGCTA
Found at i:41263618 original size:6 final size:6
Alignment explanation
Indices: 41263607--41263634 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
41263597 GGATTGCAAT
41263607 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTT
41263635 TGGAAACCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTCA
Found at i:41265078 original size:13 final size:13
Alignment explanation
Indices: 41265060--41265085 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
41265050 TAGTGCCATA
41265060 GTTTTTTTATACC
1 GTTTTTTTATACC
41265073 GTTTTTTTATACC
1 GTTTTTTTATACC
41265086 TCATATTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.08, T:0.62
Consensus pattern (13 bp):
GTTTTTTTATACC
Found at i:41278700 original size:17 final size:18
Alignment explanation
Indices: 41278680--41278713 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
41278670 ATTTAAACTT
*
41278680 AAAAATAATTA-AAATTA
1 AAAAAAAATTAGAAATTA
41278697 AAAAAAAATTAGAAATT
1 AAAAAAAATTAGAAATT
41278714 TTTTAGGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAAAAATTAGAAATTA
Found at i:41281267 original size:54 final size:54
Alignment explanation
Indices: 41281209--41281314 Score: 131
Period size: 54 Copynumber: 2.0 Consensus size: 54
41281199 AGGGTGATGA
41281209 TGTTGATGTCAATAAAGGTGGAGAGAGAGACGAAGGTGGTGAGAAGGGGGTTGG
1 TGTTGATGTCAATAAAGGTGGAGAGAGAGACGAAGGTGGTGAGAAGGGGGTTGG
* * * * * * * * *
41281263 TGTTGCTGTCAGTGAATGTGGTGAGAGTGATGGAGGTGGTGAGGAGGGGGTT
1 TGTTGATGTCAATAAAGGTGGAGAGAGAGACGAAGGTGGTGAGAAGGGGGTT
41281315 AGGGATGAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.24, C:0.04, G:0.48, T:0.25
Consensus pattern (54 bp):
TGTTGATGTCAATAAAGGTGGAGAGAGAGACGAAGGTGGTGAGAAGGGGGTTGG
Found at i:41283903 original size:160 final size:159
Alignment explanation
Indices: 41283514--41283921 Score: 491
Period size: 161 Copynumber: 2.6 Consensus size: 159
41283504 ATGCAGTCAA
* * * * *
41283514 CCTAACACAATGGGAACACAAGTATATCGTAAACA-TTTTTTCATTGTCAATTCCAAAATATTAA
1 CCTAACACAATTGGATCACAAGTATATCGTAAACACTTTTTT-AATGTCAATTCCAAATTATTTA
* ** * * *
41283578 AATCTAATTTGGGTTCTGA-GTTTTTTGGTCTTAGTCTTGTACGAGTACGAAAACTAGAAGCCCA
65 AATCTAATTTGGGTTCTGATTTTTTTTAATCTTAGCCTGGTACGAGTACGAAAACTAGAAGCCAA
*
41283642 AAAAATAACAACATAACACCAAGCATTCAG
130 AAAAAGAACAACATAACACCAAGCATTCAG
* * * * * * ** *
41283672 TCTAATACAACTAGATCACAGGTATATCGTATACACTATTTTTAATGTCAATTTAACAATAATTT
1 CCTAACACAATTGGATCACAAGTATATCGTAAACACT-TTTTTAATGTCAATTCCA-AATTATTT
*
41283737 -AATCTAATTTGAGGTTCTGATTTTTTTTAATCTTAGCCTGGTATGAGTAC-ACAAACTAGAAGC
64 AAATCTAATTTG-GGTTCTGATTTTTTTTAATCTTAGCCTGGTACGAGTACGA-AAACTAGAAGC
* * * *
41283800 CAAAAAAAGAACAACATGACACTATGCATTCTG
127 CAAAAAAAGAACAACATAACACCAAGCATTCAG
*
41283833 CCTAACACAATTGGATCACAAGTATATCGTAAATACTTTTTTAATGTCAATTCCAAATTATTTAA
1 CCTAACACAATTGGATCACAAGTATATCGTAAACACTTTTTTAATGTCAATTCCAAATTATTTAA
41283898 ATCTAATTTGGGGTTCTGATTTTT
66 ATCTAATTT-GGGTTCTGATTTTT
41283922 GTTCTCAGTC
Statistics
Matches: 206, Mismatches: 36, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
158 27 0.13
159 29 0.14
160 58 0.28
161 92 0.45
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.34
Consensus pattern (159 bp):
CCTAACACAATTGGATCACAAGTATATCGTAAACACTTTTTTAATGTCAATTCCAAATTATTTAA
ATCTAATTTGGGTTCTGATTTTTTTTAATCTTAGCCTGGTACGAGTACGAAAACTAGAAGCCAAA
AAAAGAACAACATAACACCAAGCATTCAG
Found at i:41284155 original size:69 final size:69
Alignment explanation
Indices: 41284073--41284221 Score: 235
Period size: 69 Copynumber: 2.2 Consensus size: 69
41284063 AAATGATTTG
* * *
41284073 TTGAAATGGTTGGTCAACATCTTATTGCTATAGGATCATTTTGTTAGCATAGCATATTTTGTTTG
1 TTGAAATGATTGGTCAACATCTTACTGCTATAGGATCATTTTGTTAGCATAACATATTTTGTTTG
41284138 TTTT
66 TTTT
* * * *
41284142 TTGAAATGATTGGTTAACATTTTACTGTTATAGGATCATTTTGTTAGTATAACATATTTTGTTTG
1 TTGAAATGATTGGTCAACATCTTACTGCTATAGGATCATTTTGTTAGCATAACATATTTTGTTTG
41284207 TTTT
66 TTTT
41284211 TTGAAATGATT
1 TTGAAATGATT
41284222 TGTTGAAAGA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 73 1.00
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.50
Consensus pattern (69 bp):
TTGAAATGATTGGTCAACATCTTACTGCTATAGGATCATTTTGTTAGCATAACATATTTTGTTTG
TTTT
Found at i:41285723 original size:121 final size:114
Alignment explanation
Indices: 41285553--41285771 Score: 303
Period size: 114 Copynumber: 1.9 Consensus size: 114
41285543 TACTCTAATA
* * *
41285553 TTCACACATGGGAAAGGAATGTTTCATCAATATCGAATTAAAAATATAAAAAATATAAAAAAATC
1 TTCACACATGGGAAAGAAATGTTTCATCAATATCCAATT-AAAA-A-AATAAA-A-AAAAAAA-C
* *
41285618 TCTAATTTCTTATGAAGCCTAAAACAAATCGGCTAAATATACTTACTCGAATACAT
60 AC-AATTTCTTATGAACCCTAAAACAAATCGGCTAAATATACTTACTCGAATACAT
* **
41285674 TTCACGCATGGGAAAGAAATGTTTCATCAATATCCAATTAAAAAAATAAAAAAAATCACACAATT
1 TTCACACATGGGAAAGAAATGTTTCATCAATATCCAATTAAAAAAATAAAAAAAAAAACACAATT
41285739 TCTTATGAACCCTAAAACAAATCGGCTAAATAT
66 TCTTATGAACCCTAAAACAAATCGGCTAAATAT
41285772 GCAATGACTA
Statistics
Matches: 90, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
114 36 0.40
115 2 0.02
116 5 0.06
117 1 0.01
118 5 0.06
119 1 0.01
120 4 0.04
121 36 0.40
ACGTcount: A:0.47, C:0.16, G:0.10, T:0.27
Consensus pattern (114 bp):
TTCACACATGGGAAAGAAATGTTTCATCAATATCCAATTAAAAAAATAAAAAAAAAAACACAATT
TCTTATGAACCCTAAAACAAATCGGCTAAATATACTTACTCGAATACAT
Found at i:41286288 original size:18 final size:17
Alignment explanation
Indices: 41286245--41286293 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
41286235 AGTTAGGGGT
*
41286245 TTTAAATGTTTTTTTTAA
1 TTTAAAT-TATTTTTTAA
*
41286263 TTTTAATTATTTTTTAA
1 TTTAAATTATTTTTTAA
41286280 GTTTAAATTCATTT
1 -TTTAAATT-ATTT
41286294 ACTGATGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 9 0.35
18 13 0.50
19 4 0.15
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (17 bp):
TTTAAATTATTTTTTAA
Found at i:41287043 original size:29 final size:29
Alignment explanation
Indices: 41287010--41287065 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
41287000 TATAGGATTT
*
41287010 GATCAAATTAGTCCCTT-TATTGTTAAATG
1 GATCAAATTAGT-CCTTATATTATTAAATG
*
41287039 GATCAATTTAGTCCTTATATTATTAAA
1 GATCAAATTAGTCCTTATATTATTAAA
41287066 AAGAAACAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 20 0.83
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (29 bp):
GATCAAATTAGTCCTTATATTATTAAATG
Found at i:41289915 original size:58 final size:58
Alignment explanation
Indices: 41289766--41290018 Score: 411
Period size: 58 Copynumber: 4.3 Consensus size: 58
41289756 AAAGATGAAT
* *
41289766 TTGATACGATCTACTCTATTCTTCAGTCTGCTCCACTGTAAACTCAGAGAGGTAAGACTAC
1 TTGATGCGATCTACTCTATTCTTCAGTCTGCTCCACTGTAAACTCAGAGAGATAAG---AC
41289827 TTGATGCGATCTACTCTATTCTTCAGTCTGCTCCACTGTAAACTCA-AGGAGATAAGAC
1 TTGATGCGATCTACTCTATTCTTCAGTCTGCTCCACTGTAAACTCAGA-GAGATAAGAC
41289885 TTGATGCGATCTACTCTATTCTTCAGTCTGCTCCACTGTAAACTCA-AGGAGATAAGAC
1 TTGATGCGATCTACTCTATTCTTCAGTCTGCTCCACTGTAAACTCAGA-GAGATAAGAC
* *
41289943 TTGATGCGATCTACTCTATTCTTCAGTCTGCTCCACTGTAACCTCAGAGAGGTAAGAC
1 TTGATGCGATCTACTCTATTCTTCAGTCTGCTCCACTGTAAACTCAGAGAGATAAGAC
41290001 TTGATGCGATCTACTCTA
1 TTGATGCGATCTACTCTA
41290019 CTGCAACTTT
Statistics
Matches: 186, Mismatches: 4, Indels: 7
0.94 0.02 0.04
Matches are distributed among these distances:
58 132 0.71
59 1 0.01
60 1 0.01
61 52 0.28
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (58 bp):
TTGATGCGATCTACTCTATTCTTCAGTCTGCTCCACTGTAAACTCAGAGAGATAAGAC
Found at i:41290590 original size:45 final size:45
Alignment explanation
Indices: 41290498--41290612 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 45
41290488 TTAGTCTGCC
* * * **
41290498 CCACTGCAATTTCAGGG-GATAAGACTTACTTCATTGAGTCTGGT
1 CCACTGCAACTTCAGGGAAATAAGACTCACTTCATTGAGTCTACT
* *
41290542 CCACTGCAACTTCAGGGAAATAAGACTCGCTTTC-TTGGGTCTACT
1 CCACTGCAACTTCAGGGAAATAAGACTCAC-TTCATTGAGTCTACT
* *
41290587 CCACTACAACTTCAGGAAAATAAGAC
1 CCACTGCAACTTCAGGGAAATAAGAC
41290613 CCGATGTGAT
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
44 16 0.27
45 41 0.68
46 3 0.05
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (45 bp):
CCACTGCAACTTCAGGGAAATAAGACTCACTTCATTGAGTCTACT
Found at i:41290732 original size:44 final size:44
Alignment explanation
Indices: 41290684--41290907 Score: 237
Period size: 44 Copynumber: 5.2 Consensus size: 44
41290674 ACTGCAACTT
** * * *
41290684 CAGGGAGATAAGATTTGCCATCATTAACCTATTCCACTACTGTC
1 CAGGGAGATAAGATTCACAATCTTTAACCTATTCCACTACTGAC
*
41290728 CAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGAC
1 CAGGGAGATAAGATTCACAATCTTTAACCTATTCCACTACTGAC
** * * *
41290772 CAGGGAGAT-AG---GGC--TCTTTAATCTATTCCACTGCTGCC
1 CAGGGAGATAAGATTCACAATCTTTAACCTATTCCACTACTGAC
* * *
41290810 CAGGGAGAT-AGCATTCTCAATCTTCAACCTATTCCACTACTGGC
1 CAGGGAGATAAG-ATTCACAATCTTTAACCTATTCCACTACTGAC
* * *
41290854 CAGGGAGATAAGATTCACAATCTTTAACCTATTTCACTGCTAAC
1 CAGGGAGATAAGATTCACAATCTTTAACCTATTCCACTACTGAC
41290898 CAGGGAGATA
1 CAGGGAGATA
41290908 GAGCTCTTTA
Statistics
Matches: 149, Mismatches: 24, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
38 32 0.21
40 1 0.01
42 1 0.01
43 1 0.01
44 112 0.75
45 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (44 bp):
CAGGGAGATAAGATTCACAATCTTTAACCTATTCCACTACTGAC
Found at i:41290814 original size:82 final size:82
Alignment explanation
Indices: 41290707--41290863 Score: 251
Period size: 82 Copynumber: 1.9 Consensus size: 82
41290697 TTTGCCATCA
* * *
41290707 TTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGAC
1 TTAACCTATTCCACTACTGCCCAGGGAGATAGCATTCACAATCTTCAACCTATTCCACTACTGAC
41290772 CAGGGAGATAGGGCTCT
66 CAGGGAGATAGGGCTCT
* * * *
41290789 TTAATCTATTCCACTGCTGCCCAGGGAGATAGCATTCTCAATCTTCAACCTATTCCACTACTGGC
1 TTAACCTATTCCACTACTGCCCAGGGAGATAGCATTCACAATCTTCAACCTATTCCACTACTGAC
41290854 CAGGGAGATA
66 CAGGGAGATA
41290864 AGATTCACAA
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 68 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (82 bp):
TTAACCTATTCCACTACTGCCCAGGGAGATAGCATTCACAATCTTCAACCTATTCCACTACTGAC
CAGGGAGATAGGGCTCT
Found at i:41290849 original size:126 final size:126
Alignment explanation
Indices: 41290709--41290946 Score: 404
Period size: 126 Copynumber: 1.9 Consensus size: 126
41290699 TGCCATCATT
* * *
41290709 AACCTATTCCACTACTGTCCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTACTGACCA
1 AACCTATTCCACTACTGGCCAGGGAGATAAGATTCACAATCTTTAACCTATTCCACTACTAACCA
* * *
41290774 GGGAGATAGGGCTCTTTAATCTATTCCACTGCTGCCCAGGGAGATAGCATTCTCAATCTTC
66 GGGAGATAGAGCTCTTTAATCTATTCCAATGCTGACCAGGGAGATAGCATTCTCAATCTTC
* *
41290835 AACCTATTCCACTACTGGCCAGGGAGATAAGATTCACAATCTTTAACCTATTTCACTGCTAACCA
1 AACCTATTCCACTACTGGCCAGGGAGATAAGATTCACAATCTTTAACCTATTCCACTACTAACCA
41290900 GGGAGATAGAGCTCTTTAATCTATTCCAATGCTGACCAGGGAGATAG
66 GGGAGATAGAGCTCTTTAATCTATTCCAATGCTGACCAGGGAGATAG
41290947 GGTTAGGGTC
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 104 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (126 bp):
AACCTATTCCACTACTGGCCAGGGAGATAAGATTCACAATCTTTAACCTATTCCACTACTAACCA
GGGAGATAGAGCTCTTTAATCTATTCCAATGCTGACCAGGGAGATAGCATTCTCAATCTTC
Found at i:41291081 original size:88 final size:88
Alignment explanation
Indices: 41290958--41291533 Score: 1008
Period size: 88 Copynumber: 6.5 Consensus size: 88
41290948 GTTAGGGTCA
* * *
41290958 TCGATCTGCTTCGCTGTCGGTGTAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
*
41291023 CCAAAGAGGCAAGGCTGGTGTCT
66 CCAAGGAGGCAAGGCTGGTGTCT
** * * * * * *
41291046 TCGATCTGCTTCGCTGTTGGTGCAAGAAGGAAAGATCTGATATTTTTAACCTGATCCGCTGCAAT
1 TCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
*
41291111 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAAGGAGGCAAGGCTGGTGTCT
41291134 TCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
41291199 CCAAGGAGGCAAGGCTGGTGTCT
66 CCAAGGAGGCAAGGCTGGTGTCT
41291222 TCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
41291287 CCAAGGAGGCAAGGCTGGTGTCT
66 CCAAGGAGGCAAGGCTGGTGTCT
41291310 TCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
41291375 CCAAGGAGGCAAGGCTGGTGTCT
66 CCAAGGAGGCAAGGCTGGTGTCT
41291398 TCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
1 TCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
41291463 CCAAGGAGGCAAGGCTGGTGTCT
66 CCAAGGAGGCAAGGCTGGTGTCT
* * *
41291486 TCGATCTGCTTCGCTGTCGGTACAAGAAGGCAAGATCTGCTATTTTTA
1 TCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTA
41291534 CCGATCTGTT
Statistics
Matches: 467, Mismatches: 21, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 467 1.00
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.27
Consensus pattern (88 bp):
TCGATCTGCTTCGCTGTCAGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAAC
CCAAGGAGGCAAGGCTGGTGTCT
Found at i:41291209 original size:44 final size:44
Alignment explanation
Indices: 41291161--41291475 Score: 216
Period size: 44 Copynumber: 7.2 Consensus size: 44
41291151 CAGTGCAGGA
41291161 AGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAAGG
1 AGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAAGG
* * * * * * * ***
41291205 AGGCAAG-GCTGGT-GTCTTCGATCTGCTTCGCTGTCAGTGC-AGG
1 AGGCAAGATCTGCTATTTTTAG-CCTGCTCCGCTG-CAACCCAAGG
41291248 AAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAAGG
1 -AGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAAGG
* * * * * * * ***
41291293 AGGCAAG-GCTGGT-GTCTTCGATCTGCTTCGCTGTCAGTGC-AGG
1 AGGCAAGATCTGCTATTTTTAG-CCTGCTCCGCTG-CAACCCAAGG
41291336 AAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAAGG
1 -AGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAAGG
* * * * * * * ***
41291381 AGGCAAG-GCTGGT-GTCTTCGATCTGCTTCGCTGTCAGTGC-AGG
1 AGGCAAGATCTGCTATTTTTAG-CCTGCTCCGCTG-CAACCCAAGG
41291424 AAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAAGG
1 -AGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAAGG
41291469 AGGCAAG
1 AGGCAAG
41291476 GCTGGTGTCT
Statistics
Matches: 193, Mismatches: 60, Indels: 36
0.67 0.21 0.12
Matches are distributed among these distances:
42 12 0.06
43 51 0.26
44 67 0.35
45 51 0.26
46 12 0.06
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.25
Consensus pattern (44 bp):
AGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAACCCAAGG
Found at i:41296950 original size:16 final size:16
Alignment explanation
Indices: 41296926--41296963 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
41296916 TAAAAGTTAC
*
41296926 AAAAAATAAA-AAAAT
1 AAAATATAAATAAAAT
41296941 ATAAATATAAATAAAAT
1 A-AAATATAAATAAAAT
41296958 AAAATA
1 AAAATA
41296964 ATTATTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 1 0.05
16 13 0.65
17 6 0.30
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAATATAAATAAAAT
Found at i:41299097 original size:32 final size:31
Alignment explanation
Indices: 41299040--41299102 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
41299030 ATATATAAAA
* *
41299040 CAATAATAAATAAAATATATATAAATTTATT
1 CAATAATAAATAAAATAAATATAAATATATT
* *
41299071 CAATATTAAATTAAAATAAATGTAAATATATT
1 CAATAATAAA-TAAAATAAATATAAATATATT
41299103 TTTAATTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 9 0.33
32 18 0.67
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (31 bp):
CAATAATAAATAAAATAAATATAAATATATT
Found at i:41299125 original size:51 final size:51
Alignment explanation
Indices: 41299063--41299164 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
41299053 AATATATATA
*
41299063 AATTTATTCAATATTAAATTAAAATAAATGTAAATATATTTTTAATTTTTT
1 AATTTATTCAATATTAAATTAAAATAAATATAAATATATTTTTAATTTTTT
* *
41299114 AATTTTTTCAATATTAAATTAAAATGAATATAAATATATTTTTAATTTTTT
1 AATTTATTCAATATTAAATTAAAATAAATATAAATATATTTTTAATTTTTT
41299165 TTAAAATAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (51 bp):
AATTTATTCAATATTAAATTAAAATAAATATAAATATATTTTTAATTTTTT
Found at i:41299950 original size:26 final size:26
Alignment explanation
Indices: 41299914--41299965 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
41299904 CTCAAAGACA
41299914 ACATCCTTCCACTTGAAATCCCATGT
1 ACATCCTTCCACTTGAAATCCCATGT
41299940 ACATCCTTCCACTTGAAATCCCATGT
1 ACATCCTTCCACTTGAAATCCCATGT
41299966 TAGTTTATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.35, G:0.08, T:0.31
Consensus pattern (26 bp):
ACATCCTTCCACTTGAAATCCCATGT
Found at i:41302248 original size:32 final size:31
Alignment explanation
Indices: 41302179--41302248 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
41302169 GATACTTGTA
* * *
41302179 TTATTTTTTTTATCAGTTTGACCCTTATACT
1 TTATTTTTTATATCAATTTGACCCTTACACT
*
41302210 TTATTTTTTATATCAATTTGACTCC-TGCACT
1 TTATTTTTTATATCAATTTGAC-CCTTACACT
*
41302241 TTAATTTT
1 TTATTTTT
41302249 GTAATCCCTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
31 31 0.94
32 2 0.06
ACGTcount: A:0.21, C:0.16, G:0.06, T:0.57
Consensus pattern (31 bp):
TTATTTTTTATATCAATTTGACCCTTACACT
Found at i:41302872 original size:18 final size:17
Alignment explanation
Indices: 41302841--41302893 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 17
41302831 TTATTTTTTA
41302841 GTTTTTATAATTTTAAAT
1 GTTTTT-TAATTTTAAAT
*
41302859 -TTCTTTTGAATTTTTAAT
1 GTT-TTTT-AATTTTAAAT
41302877 GTTTTTTAATTTTAAAT
1 GTTTTTTAATTTTAAAT
41302894 AAATTTTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
17 12 0.40
18 16 0.53
19 2 0.07
ACGTcount: A:0.28, C:0.02, G:0.06, T:0.64
Consensus pattern (17 bp):
GTTTTTTAATTTTAAAT
Found at i:41302906 original size:35 final size:35
Alignment explanation
Indices: 41302833--41302908 Score: 91
Period size: 35 Copynumber: 2.2 Consensus size: 35
41302823 ACATATTTTT
* *** *
41302833 ATTTTTTAGTTTTTATAATTTTAAATTTCTTTTGA
1 ATTTTTAAGTTTTTATAATTTTAAATAAATTTTAA
41302868 ATTTTTAATGTTTTT-TAATTTTAAATAAATTTTAA
1 ATTTTTAA-GTTTTTATAATTTTAAATAAATTTTAA
41302903 ATTTTT
1 ATTTTT
41302909 TAACACATGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
35 29 0.83
36 6 0.17
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.64
Consensus pattern (35 bp):
ATTTTTAAGTTTTTATAATTTTAAATAAATTTTAA
Found at i:41321369 original size:21 final size:22
Alignment explanation
Indices: 41321345--41321389 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
41321335 AGAAAAAGAG
41321345 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
41321366 AAATTAAAAAAGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
41321388 AA
1 AA
41321390 CGATTTGCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.69, C:0.07, G:0.09, T:0.16
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:41324226 original size:35 final size:35
Alignment explanation
Indices: 41324177--41324455 Score: 377
Period size: 35 Copynumber: 8.1 Consensus size: 35
41324167 GTCTAAAAAG
* *
41324177 AAATAATACATGAACAGGAGAGATTCCTTGCAACA
1 AAATAATGCGTGAACAGGAGAGATTCCTTGCAACA
* *
41324212 AAATAATGCGTGAACAGGAGAGATTCCCTGCAA-G
1 AAATAATGCGTGAACAGGAGAGATTCCTTGCAACA
* * *
41324246 AAATGATGCGTGAACAAGAAAGATTCCTTGCAACA
1 AAATAATGCGTGAACAGGAGAGATTCCTTGCAACA
* *
41324281 AAATAATGCGTGAACAGGAGAGATTCCCTGCAA-G
1 AAATAATGCGTGAACAGGAGAGATTCCTTGCAACA
* * *
41324315 AAATGATGCGTGAACAAGAAAGATTCCTTGCAACA
1 AAATAATGCGTGAACAGGAGAGATTCCTTGCAACA
*
41324350 AAATAATGCGTGAACAGGAAAGATT-CTCTGCAACA
1 AAATAATGCGTGAACAGGAGAGATTCCT-TGCAACA
*
41324385 AAATAATGCGTGAATAGGAGAGATTCC-TGCAACA
1 AAATAATGCGTGAACAGGAGAGATTCCTTGCAACA
* *
41324419 AAATAATGCGTGAACAGAAGAGATTCCCTGCAACA
1 AAATAATGCGTGAACAGGAGAGATTCCTTGCAACA
41324454 AA
1 AA
41324456 TATTCCCTGC
Statistics
Matches: 214, Mismatches: 25, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
34 92 0.43
35 121 0.57
36 1 0.00
ACGTcount: A:0.42, C:0.17, G:0.22, T:0.19
Consensus pattern (35 bp):
AAATAATGCGTGAACAGGAGAGATTCCTTGCAACA
Found at i:41324270 original size:69 final size:69
Alignment explanation
Indices: 41324187--41324456 Score: 425
Period size: 69 Copynumber: 3.9 Consensus size: 69
41324177 AAATAATACA
* *
41324187 TGAACAGGAGAGATTCCTTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGA
1 TGAACAAGAAAGATTCCTTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGA
41324252 TGCG
66 TGCG
41324256 TGAACAAGAAAGATTCCTTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGA
1 TGAACAAGAAAGATTCCTTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGA
41324321 TGCG
66 TGCG
* * * *
41324325 TGAACAAGAAAGATTCCTTGCAACAAAATAATGCGTGAACAGGAAAGATTCTCTGCAACAAAATA
1 TGAACAAGAAAGATTCCTTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAA-GAAATG
41324390 ATGCG
65 ATGCG
* * * * *
41324395 TGAATAGGAGAGATTCC-TGCAACAAAATAATGCGTGAACAGAAGAGATTCCCTGCAACAAAT
1 TGAACAAGAAAGATTCCTTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAAT
41324457 ATTCCCTGCA
Statistics
Matches: 187, Mismatches: 13, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
68 4 0.02
69 160 0.86
70 23 0.12
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.19
Consensus pattern (69 bp):
TGAACAAGAAAGATTCCTTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGA
TGCG
Found at i:41324359 original size:104 final size:105
Alignment explanation
Indices: 41324177--41324455 Score: 397
Period size: 104 Copynumber: 2.7 Consensus size: 105
41324167 GTCTAAAAAG
* * * * *
41324177 AAATAATACATGAACAGGAGAGATTCCTTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTG
1 AAATAATGCGTGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAAGAAAGATTCCCTG
* *
41324242 CAA-GAAATGATGCGTGAACAAGAAAGATTC-CTTGCAACA
66 CAACAAAATAATGCGTGAACAAGAAAGATTCTC-TGCAACA
* * *
41324281 AAATAATGCGTGAACAGGAGAGATTCCCTGCAA-GAAATGATGCGTGAACAAGAAAGATTCCTTG
1 AAATAATGCGTGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAAGAAAGATTCCCTG
*
41324345 CAACAAAATAATGCGTGAACAGGAAAGATTCTCTGCAACA
66 CAACAAAATAATGCGTGAACAAGAAAGATTCTCTGCAACA
*
41324385 AAATAATGCGTGAATAGGAGAGATT-CCTGCAACAAAATAATGCGTGAAC-AGAAGAGATTCCCT
1 AAATAATGCGTGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAAGAA-AGATTCCCT
41324448 GCAACAAA
65 GCAACAAA
41324456 TATTCCCTGC
Statistics
Matches: 156, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
103 40 0.26
104 115 0.74
105 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.22, T:0.19
Consensus pattern (105 bp):
AAATAATGCGTGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAAGAAAGATTCCCTG
CAACAAAATAATGCGTGAACAAGAAAGATTCTCTGCAACA
Found at i:41325175 original size:82 final size:81
Alignment explanation
Indices: 41325066--41325222 Score: 244
Period size: 82 Copynumber: 1.9 Consensus size: 81
41325056 CATGCATAAG
* * * **
41325066 GTTGAGTTATTACTCTTAATGGATTCATAGCCTAGATTTTGGGTGGTCCTATTGAGATGGACTTG
1 GTTGAGTTATTACTCTTAATGGATTCATAGCCCAAAGTTTGGGTGGTCCTATTGAGACAGACTTG
41325131 ATGAATTCATTGACTT
66 ATGAATTCATTGACTT
41325147 GTTGAGTTTATTACTCTTAAT-GAGTTCATAGCCCAAAGTTTGGGTGGTCCTATTGAGACAGACT
1 GTTGAG-TTATTACTCTTAATGGA-TTCATAGCCCAAAGTTTGGGTGGTCCTATTGAGACAGACT
41325211 TGATGAATTCAT
64 TGATGAATTCAT
41325223 CAAATCTAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
81 8 0.12
82 61 0.88
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.39
Consensus pattern (81 bp):
GTTGAGTTATTACTCTTAATGGATTCATAGCCCAAAGTTTGGGTGGTCCTATTGAGACAGACTTG
ATGAATTCATTGACTT
Found at i:41325716 original size:27 final size:27
Alignment explanation
Indices: 41325686--41325745 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
41325676 ATTGTTGGTA
*
41325686 ATATGCAAAGGATTGTTGGTAGTGGGT
1 ATATCCAAAGGATTGTTGGTAGTGGGT
*
41325713 ATATCCTAAGGATTGTTGGTAGTGGGT
1 ATATCCAAAGGATTGTTGGTAGTGGGT
41325740 ATATCC
1 ATATCC
41325746 TACATTGGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.25, C:0.08, G:0.32, T:0.35
Consensus pattern (27 bp):
ATATCCAAAGGATTGTTGGTAGTGGGT
Found at i:41325746 original size:27 final size:27
Alignment explanation
Indices: 41325693--41325747 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
41325683 GTAATATGCA
41325693 AAGGATTGTTGGTAGTGGGTATATCCT
1 AAGGATTGTTGGTAGTGGGTATATCCT
41325720 AAGGATTGTTGGTAGTGGGTATATCCT
1 AAGGATTGTTGGTAGTGGGTATATCCT
41325747 A
1 A
41325748 CATTGGTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.24, C:0.07, G:0.33, T:0.36
Consensus pattern (27 bp):
AAGGATTGTTGGTAGTGGGTATATCCT
Found at i:41331077 original size:5 final size:5
Alignment explanation
Indices: 41331067--41331096 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
41331057 AACTTAATGC
41331067 ATGTA ATGTA ATGTA ATGTA ATGTA ATGTA
1 ATGTA ATGTA ATGTA ATGTA ATGTA ATGTA
41331097 GATGCATGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
ATGTA
Found at i:41335008 original size:22 final size:20
Alignment explanation
Indices: 41334983--41335034 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 20
41334973 CAAATTAAAA
41334983 TAAATAAAATGTAGAACAA-TTT
1 TAAATAAAA--TA-AACAAGTTT
41335005 TAAAATAATAATAAACAAGTTT
1 T-AAATAA-AATAAACAAGTTT
41335027 TAAATAAA
1 TAAATAAA
41335035 TATTGTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
20 1 0.04
21 11 0.41
22 7 0.26
23 6 0.22
24 2 0.07
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.31
Consensus pattern (20 bp):
TAAATAAAATAAACAAGTTT
Found at i:41339127 original size:22 final size:24
Alignment explanation
Indices: 41339084--41339129 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
41339074 CTCACATCTA
41339084 TTATGATTTTGATATCAATTTTTT
1 TTATGATTTTGATATCAATTTTTT
*
41339108 TTAT-ATTTTTATA-CAATTTTTT
1 TTATGATTTTGATATCAATTTTTT
41339130 CATTCACATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.43
23 8 0.38
24 4 0.19
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.65
Consensus pattern (24 bp):
TTATGATTTTGATATCAATTTTTT
Found at i:41345784 original size:23 final size:21
Alignment explanation
Indices: 41345741--41345784 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
41345731 TTTGGTCATC
**
41345741 TAATTATTAATTTTTTTAATT
1 TAATTATTAATTTTTGAAATT
41345762 TAATTACTTAAATTTTTGAAATT
1 TAATTA-TT-AATTTTTGAAATT
41345785 AAATATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 6 0.32
22 2 0.11
23 11 0.58
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TAATTATTAATTTTTGAAATT
Found at i:41345786 original size:22 final size:21
Alignment explanation
Indices: 41345741--41345791 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
41345731 TTTGGTCATC
* * *
41345741 TAATTATTAATTTTTTTAATT
1 TAATTATTAAATTTTTGAAAT
41345762 TAATTACTTAAATTTTTGAAAT
1 TAATTA-TTAAATTTTTGAAAT
*
41345784 TAAATATT
1 TAATTATT
41345792 TTAATTATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (21 bp):
TAATTATTAAATTTTTGAAAT
Found at i:41346811 original size:125 final size:125
Alignment explanation
Indices: 41346584--41346961 Score: 621
Period size: 125 Copynumber: 3.0 Consensus size: 125
41346574 TTAGGGATTT
* * *
41346584 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGATCAAATAGTACAAAATCGCTTCTAGT
1 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
* * * *
41346649 AGAATGCTGTTTGATAAGATTTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
66 AGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
*
41346709 TAGGTCCTGGAAGAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
1 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
* * *
41346774 AGGATGCTATTTGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTACAACAG
66 AGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
*
41346834 TAGGTCATGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
1 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
* * *
41346899 AGGATGCTATTTGAGAAGAATTTGTGAAAGCGCGCCCTCGTGAACGCGCTTTTGCTATAG
66 AGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
41346959 TAG
1 TAG
41346962 CATGTTTGGG
Statistics
Matches: 234, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
125 234 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (125 bp):
TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
AGGATGCTATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
Found at i:41347985 original size:14 final size:14
Alignment explanation
Indices: 41347956--41348001 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
41347946 AATTTACAAC
*
41347956 ATATACGAATAAAT
1 ATATACAAATAAAT
* *
41347970 ATTTACAAATATAT
1 ATATACAAATAAAT
41347984 ATATACAAATACAAT
1 ATATACAAATA-AAT
41347999 ATA
1 ATA
41348002 ACAGTAAAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 21 0.81
15 5 0.19
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.33
Consensus pattern (14 bp):
ATATACAAATAAAT
Found at i:41348037 original size:13 final size:13
Alignment explanation
Indices: 41348019--41348048 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
41348009 AGTTGAAAAC
41348019 ATATCTAACACAT
1 ATATCTAACACAT
41348032 ATATCTAACACAT
1 ATATCTAACACAT
41348045 ATAT
1 ATAT
41348049 ACAAGTATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (13 bp):
ATATCTAACACAT
Found at i:41350192 original size:132 final size:132
Alignment explanation
Indices: 41349994--41350397 Score: 729
Period size: 132 Copynumber: 3.1 Consensus size: 132
41349984 ATTTCTTCTG
* *
41349994 TCTATTCCACTGTTGCCCCGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTAGG
1 TCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCATTGTAACCTTAGG
41350059 GAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC
66 GAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC
41350124 AA
131 AA
* * *
41350126 TCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCATTGCAACATCAGG
1 TCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCATTGTAACCTTAGG
*
41350191 GAGGTAAAATCCACCATATTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC
66 GAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC
41350256 AA
131 AA
41350258 TCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCC-TCTGTAACCTTAG
1 TCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCAT-TGTAACCTTAG
*
41350322 GGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATATT
65 GGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT
41350387 CAA
130 CAA
41350390 TCTATTCC
1 TCTATTCC
41350398 CCCACCAGTA
Statistics
Matches: 260, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
131 1 0.00
132 259 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
TCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCATTGTAACCTTAGG
GAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC
AA
Found at i:41350699 original size:179 final size:178
Alignment explanation
Indices: 41350385--41350962 Score: 922
Period size: 179 Copynumber: 3.2 Consensus size: 178
41350375 ATCTGTAATA
* * * *
41350385 TTCAATCTATTCCCCCACCAGTATGGGGAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAG
1 TTCAATCTACTCCACCACCAGTATGGGGAGGCAAGATCTGTTACCTTTGATCTACTTCACGCCAG
* * * * *
41350450 TACATGAAGACAAGATCTGCTTTTCTTCAATCTGCTCCACCACCAGTATGGGGAGGCAAGATCTG
66 TACATGAAGACAAGATCTG-TTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTG
41350515 GTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTT
130 GTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTT
*
41350564 CTTCAATCTGCTCCACCACCAGTATGGGGAGGCAAGATCTGTTACCTTTGATCTACTTCACGCCA
1 -TTCAATCTACTCCACCACCAGTATGGGGAGGCAAGATCTGTTACCTTTGATCTACTTCACGCCA
* * *
41350629 GTACATGAAGACAAGATCTGTTTCCTTTGATCTGCTTCGCCACCAGTATGGGAAGACAATATCTG
65 GTACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTG
*
41350694 GTATCTTTGATCTACTTCACGCTAGTACATGAAGACAAGATCTGCTTTTT
130 GTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGC-TTTT
*
41350744 TTCAATCTGCTCCACCACCAGTATGGGGAGGCAAGATCTGTTACCTTTGATCTACTTCACGCCAG
1 TTCAATCTACTCCACCACCAGTATGGGGAGGCAAGATCTGTTACCTTTGATCTACTTCACGCCAG
*
41350809 TACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGTATGGGAACACAAGATCTGG
66 TACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGG
*
41350874 TTTCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTT
131 TATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTT
** * * **
41350922 TTTGATCTACTTCACCACCAGTATGGGAAGATAAGATCTGT
1 TTCAATCTACTCCACCACCAGTATGGGGAGGCAAGATCTGT
41350963 ATATTCGATC
Statistics
Matches: 370, Mismatches: 27, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
178 38 0.10
179 249 0.67
180 83 0.22
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (178 bp):
TTCAATCTACTCCACCACCAGTATGGGGAGGCAAGATCTGTTACCTTTGATCTACTTCACGCCAG
TACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGG
TATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTT
Found at i:41350961 original size:89 final size:90
Alignment explanation
Indices: 41350385--41350948 Score: 855
Period size: 90 Copynumber: 6.3 Consensus size: 90
41350375 ATCTGTAATA
** *
41350385 TTCAATCTATTCCCCCACCAGTATGGGGAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAG
1 TTCAATCTGCTCCACCACCAGTATGGGGAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAG
41350450 TACATGAAGACAAGATCTGCTTTTC
66 TACATGAAGACAAGATCTGCTTTTC
41350475 TTCAATCTGCTCCACCACCAGTATGGGGAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAG
1 TTCAATCTGCTCCACCACCAGTATGGGGAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAG
41350540 TACATGAAGACAAGATCTGCTTTTC
66 TACATGAAGACAAGATCTGCTTTTC
* *
41350565 TTCAATCTGCTCCACCACCAGTATGGGGAGGCAAGATCTGTTACCTTTGATCTACTTCACGCCAG
1 TTCAATCTGCTCCACCACCAGTATGGGGAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAG
*
41350630 TACATGAAGACAAGATCTG-TTTCC
66 TACATGAAGACAAGATCTGCTTTTC
** * * * * * *
41350654 TTTGATCTGCTTCGCCACCAGTATGGGAAGACAATATCTGGTATCTTTGATCTACTTCACGCTAG
1 TTCAATCTGCTCCACCACCAGTATGGGGAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAG
*
41350719 TACATGAAGACAAGATCTGCTTTTT
66 TACATGAAGACAAGATCTGCTTTTC
* *
41350744 TTCAATCTGCTCCACCACCAGTATGGGGAGGCAAGATCTGTTACCTTTGATCTACTTCACGCCAG
1 TTCAATCTGCTCCACCACCAGTATGGGGAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAG
41350809 TACATGAAGACAAGATCTG-TTTTC
66 TACATGAAGACAAGATCTGCTTTTC
* * * * ** *
41350833 TTCGATCTGCTTCGCCACCAGTATGGGAACACAAGATCTGGTTTCTTTGATCTACTTCACGCCAG
1 TTCAATCTGCTCCACCACCAGTATGGGGAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAG
41350898 TACATGAAGACAAGATCTGCTTTT-
66 TACATGAAGACAAGATCTGCTTTTC
** * *
41350922 TTTGATCTACTTCACCACCAGTATGGG
1 TTCAATCTGCTCCACCACCAGTATGGG
41350949 AAGATAAGAT
Statistics
Matches: 431, Mismatches: 41, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
89 181 0.42
90 250 0.58
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (90 bp):
TTCAATCTGCTCCACCACCAGTATGGGGAGGCAAGATCTGGTATCTTTGATCTACTTCACGCCAG
TACATGAAGACAAGATCTGCTTTTC
Found at i:41350978 original size:44 final size:44
Alignment explanation
Indices: 41350399--41350978 Score: 345
Period size: 44 Copynumber: 13.0 Consensus size: 44
41350389 ATCTATTCCC
* * * *
41350399 CCACCAGTATGGGGAGGCAAGATCTGGTATCTTTGATCTACTTCA
1 CCACCAGTATGGGAAGACAAGATCT-GTTTATTTGATCTACTTCA
* *** * * *
41350444 -CGCCAGTACATGAAGACAAGATCTGCTTT-TCTTCAATCTGCTCCA
1 CCACCAGTATGGGAAGACAAGATCTG-TTTAT-TT-GATCTACTTCA
* * * *
41350489 CCACCAGTATGGGGAGGCAAGATCTGGTATCTTTGATCTACTTCA
1 CCACCAGTATGGGAAGACAAGATCT-GTTTATTTGATCTACTTCA
* *** * * *
41350534 -CGCCAGTACATGAAGACAAGATCTGCTTT-TCTTCAATCTGCTCCA
1 CCACCAGTATGGGAAGACAAGATCTG-TTTAT-TT-GATCTACTTCA
* *
41350579 CCACCAGTATGGGGAGGCAAGATCTG-TTACCTTTGATCTACTTCA
1 CCACCAGTATGGGAAGACAAGATCTGTTTA--TTTGATCTACTTCA
* *** * * *
41350624 -CGCCAGTACATGAAGACAAGATCTGTTTCCTTTGATCTGCTTCG
1 CCACCAGTATGGGAAGACAAGATCTGTTT-ATTTGATCTACTTCA
* * *
41350668 CCACCAGTATGGGAAGACAATATCTGGTATCTTTGATCTACTTCA
1 CCACCAGTATGGGAAGACAAGATCT-GTTTATTTGATCTACTTCA
* * *** * * * *
41350713 -CGCTAGTACATGAAGACAAGATCTGCTTTTTTTCAATCTGCTCCA
1 CCACCAGTATGGGAAGACAAGATCTG-TTTATTT-GATCTACTTCA
* *
41350758 CCACCAGTATGGGGAGGCAAGATCTG-TTACCTTTGATCTACTTCA
1 CCACCAGTATGGGAAGACAAGATCTGTTTA--TTTGATCTACTTCA
* *** * *
41350803 -CGCCAGTACATGAAGACAAGATCTGTTT-TCTTCGATCTGCTTCG
1 CCACCAGTATGGGAAGACAAGATCTGTTTAT-TT-GATCTACTTCA
* *
41350847 CCACCAGTATGGGAACACAAGATCTGGTTTCTTTGATCTACTTCA
1 CCACCAGTATGGGAAGACAAGATCT-GTTTATTTGATCTACTTCA
* *** *
41350892 -CGCCAGTACATGAAGACAAGATCTGCTTTTTTTGATCTACTTCA
1 CCACCAGTATGGGAAGACAAGATCTG-TTTATTTGATCTACTTCA
* * * *
41350936 CCACCAGTATGGGAAGATAAGATCTGTATATTCGATCCACTTC
1 CCACCAGTATGGGAAGACAAGATCTGTTTATTTGATCTACTTC
41350979 GTTACCAATA
Statistics
Matches: 397, Mismatches: 108, Indels: 61
0.70 0.19 0.11
Matches are distributed among these distances:
42 1 0.00
43 8 0.02
44 179 0.45
45 132 0.33
46 73 0.18
47 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
CCACCAGTATGGGAAGACAAGATCTGTTTATTTGATCTACTTCA
Found at i:41359024 original size:20 final size:20
Alignment explanation
Indices: 41358999--41359038 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
41358989 TAAAGGTCTT
41358999 TAATGCATATAATGCGATGC
1 TAATGCATATAATGCGATGC
*
41359019 TAATGCATATGATGCGATGC
1 TAATGCATATAATGCGATGC
41359039 ATGAGGTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.30
Consensus pattern (20 bp):
TAATGCATATAATGCGATGC
Found at i:41366916 original size:45 final size:45
Alignment explanation
Indices: 41366795--41367185 Score: 564
Period size: 45 Copynumber: 8.8 Consensus size: 45
41366785 TTTTAAGTTC
* * * *
41366795 TAGTTTAAAGTTTTAAAGTTAAGGG-TTAAGGTTTTTAAGTT-GA-
1 TAGTTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAA-TTAAAT
* * * *
41366838 -GGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTCAATTAAAT
1 TAGTTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAAT
*
41366882 TAG-TTAGGGTTTTTAAGTTTAAGGGTTTAGGGTTTTTAATTAAAT
1 TAGTTTAGAGTTTTTAAG-TTAAGGGTTTAGGGTTTTTAATTAAAT
41366927 TAGTTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAAT
1 TAGTTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAAT
41366972 TAGTTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAAT
1 TAGTTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAAT
41367017 TAGTTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAAT
1 TAGTTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAAT
41367062 TAGTTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAAT
1 TAGTTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAAT
*
41367107 TAGTTTAGAGTTTTTAAGTTAAGGGTTTAAGGTTTTTAAGTT-AA-
1 TAGTTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAA-TTAAAT
* * * *
41367151 -GGGTTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTT
1 TAGTTTAGAGTTTTTAAG-TTAAGGGTTTAGGGTTT
41367186 AAGGTTTTAG
Statistics
Matches: 325, Mismatches: 15, Indels: 15
0.92 0.04 0.04
Matches are distributed among these distances:
42 21 0.06
43 26 0.08
44 31 0.10
45 232 0.71
46 15 0.05
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (45 bp):
TAGTTTAGAGTTTTTAAGTTAAGGGTTTAGGGTTTTTAATTAAAT
Found at i:41367181 original size:14 final size:14
Alignment explanation
Indices: 41367162--41367201 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
41367152 GGTTAGGGTT
41367162 TTTAAGTTTAAGGG
1 TTTAAGTTTAAGGG
*
41367176 TTTAAGGTTTAAGGT
1 TTTAA-GTTTAAGGG
*
41367191 TTTAGGTTTAA
1 TTTAAGTTTAA
41367202 ATTAGTTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (14 bp):
TTTAAGTTTAAGGG
Found at i:41367186 original size:21 final size:21
Alignment explanation
Indices: 41366797--41367903 Score: 294
Period size: 22 Copynumber: 52.6 Consensus size: 21
41366787 TTAAGTTCTA
*
41366797 GTTTAAAGTTTTAAAGTTAAGG
1 GTTTAAGGTTTT-AAGTTAAGG
*
41366819 G-TTAAGGTTTTTAAGTTGAGG
1 GTTTAAGG-TTTTAAGTTAAGG
*
41366840 G-TTAGGGTTTTTAAGTTAAGG
1 GTTTAAGG-TTTTAAGTTAAGG
* *
41366861 GTTTAGGGTTTTCAA-TTAA-A
1 GTTTAAGGTTTT-AAGTTAAGG
* *
41366881 TTAGTTAGGGTTTTTAAGTTTAAGG
1 GT--TTAAGG-TTTTAAG-TTAAGG
* **
41366906 GTTTAGGGTTTTTAA-TTAAATTA
1 GTTTAAGG-TTTTAAGTT-AA-GG
*
41366929 GTTTAGAGTTTTTAAGTTAAGG
1 GTTTA-AGGTTTTAAGTTAAGG
* **
41366951 GTTTAGGGTTTTTAA-TTAAATTA
1 GTTTAAGG-TTTTAAGTT-AA-GG
*
41366974 GTTTAGAGTTTTTAAGTTAAGG
1 GTTTA-AGGTTTTAAGTTAAGG
* **
41366996 GTTTAGGGTTTTTAA-TTAAATTA
1 GTTTAAGG-TTTTAAGTT-AA-GG
*
41367019 GTTTAGAGTTTTTAAGTTAAGG
1 GTTTA-AGGTTTTAAGTTAAGG
* **
41367041 GTTTAGGGTTTTTAA-TTAAATTA
1 GTTTAAGG-TTTTAAGTT-AA-GG
*
41367064 GTTTAGAGTTTTTAAGTTAAGG
1 GTTTA-AGGTTTTAAGTTAAGG
* **
41367086 GTTTAGGGTTTTTAA-TTAAATTA
1 GTTTAAGG-TTTTAAGTT-AA-GG
*
41367109 GTTTAGAGTTTTTAAGTTAAGG
1 GTTTA-AGGTTTTAAGTTAAGG
41367131 GTTTAAGGTTTTTAAGTTAAGG
1 GTTTAAGG-TTTTAAGTTAAGG
*
41367153 G-TTAGGGTTTTTAAGTTTAAGG
1 GTTTAAGG-TTTTAAG-TTAAGG
*
41367175 GTTTAAGG-TTTAAGGTTTTA-G
1 GTTTAAGGTTTTAA-G-TTAAGG
* *
41367196 GTTTAA---ATT-AGTTTAGG
1 GTTTAAGGTTTTAAGTTAAGG
*
41367213 GTTTTAGAGTTTTTAAGTTAAGG
1 G-TTTA-AGGTTTTAAGTTAAGG
*
41367236 G-TT-AGG--GT---TTA-GG
1 GTTTAAGGTTTTAAGTTAAGG
* **
41367249 GTTTAGGGTTTTTAA-TTAAATT
1 GTTTAAGG-TTTTAAGTT-AAGG
*
41367271 GTTTAGAGTTTTTAAGTTAAGG
1 GTTTA-AGGTTTTAAGTTAAGG
41367293 GTTTAAGGTTTTTAAGTTAAGG
1 GTTTAAGG-TTTTAAGTTAAGG
*
41367315 G-TTAGGGTTTTTAAGTTTAAGG
1 GTTTAAGG-TTTTAAG-TTAAGG
*
41367337 GTTTAAGG-TTTAAGGTTTTA-G
1 GTTTAAGGTTTTAA-G-TTAAGG
* *
41367358 GTTTAA---ATT-AGTTTAGG
1 GTTTAAGGTTTTAAGTTAAGG
*
41367375 GTTTTAGAGTTTTTAAGTTAAGG
1 G-TTTA-AGGTTTTAAGTTAAGG
*
41367398 G-TT-AGG--GT---TTA-GG
1 GTTTAAGGTTTTAAGTTAAGG
* **
41367411 GTTTAGGGTTTTTAA-TTAAATT
1 GTTTAAGG-TTTTAAGTT-AAGG
*
41367433 GTTTAGAGTTTTTAAGTTAAGG
1 GTTTA-AGGTTTTAAGTTAAGG
41367455 GTTTAAGGTTTTTAAGTTAAGG
1 GTTTAAGG-TTTTAAGTTAAGG
*
41367477 G-TTAGGGTTTTTAAGTTTAAGG
1 GTTTAAGG-TTTTAAG-TTAAGG
*
41367499 GTTTAAGG-TTTAAGGTTTTA-G
1 GTTTAAGGTTTTAA-G-TTAAGG
* *
41367520 GTTTAA---ATT-AGTTTAGG
1 GTTTAAGGTTTTAAGTTAAGG
*
41367537 GTTTTAGAGTTTTTAAGTTAAGG
1 G-TTTA-AGGTTTTAAGTTAAGG
*
41367560 G-TT-AGG--GT---TTA-GG
1 GTTTAAGGTTTTAAGTTAAGG
* **
41367573 GTTTAGGGTTTTTAA-TTAAATT
1 GTTTAAGG-TTTTAAGTT-AAGG
*
41367595 GTTTAGAGTTTTTAAGTTAAGG
1 GTTTA-AGGTTTTAAGTTAAGG
41367617 GTTTAAGGTTTTTAAGTTAAGG
1 GTTTAAGG-TTTTAAGTTAAGG
*
41367639 G-TTAGGGTTTTTAAGTTTAAGG
1 GTTTAAGG-TTTTAAG-TTAAGG
*
41367661 GTTTAAGG-TTTAAGGTTTTA-G
1 GTTTAAGGTTTTAA-G-TTAAGG
* *
41367682 GTTTAA---ATT-AGTTTAGG
1 GTTTAAGGTTTTAAGTTAAGG
*
41367699 GTTTTAGAGTTTTTAAGTTAAGG
1 G-TTTA-AGGTTTTAAGTTAAGG
*
41367722 G-TT-AGG--GT---TTA-GG
1 GTTTAAGGTTTTAAGTTAAGG
* **
41367735 GTTTAGGGTTTTTAA-TTAAATT
1 GTTTAAGG-TTTTAAGTT-AAGG
*
41367757 GTTTAGAGTTTTTAAGTTAAGG
1 GTTTA-AGGTTTTAAGTTAAGG
* *
41367779 GTTTATGGTTTTTAATTTTAAGG
1 GTTTAAGG-TTTTAA-GTTAAGG
* *
41367802 GTTTAGGGTTTTTAATTTTAAGG
1 GTTTAAGG-TTTTAA-GTTAAGG
* **
41367825 GTTTAGGGTTTTTAA-TTAAATTA
1 GTTTAAGG-TTTTAAGTT-AA-GG
*
41367848 GTTTAGGGTTTTAAGTTAAGG
1 GTTTAAGGTTTTAAGTTAAGG
*
41367869 GTTT-AGGATTTTTAATTTTAAGG
1 GTTTAAGG--TTTTAA-GTTAAGG
*
41367892 GTTTAGGGTTTT
1 GTTTAAGGTTTT
41367904 TTAGTAATAA
Statistics
Matches: 830, Mismatches: 125, Indels: 260
0.68 0.10 0.21
Matches are distributed among these distances:
13 12 0.01
14 20 0.02
15 8 0.01
16 16 0.02
17 16 0.02
18 24 0.03
19 20 0.02
20 11 0.01
21 182 0.22
22 290 0.35
23 209 0.25
24 21 0.03
25 1 0.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (21 bp):
GTTTAAGGTTTTAAGTTAAGG
Found at i:41367216 original size:7 final size:7
Alignment explanation
Indices: 41367162--41367201 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
41367152 GGTTAGGGTT
41367162 TTTAA-G
1 TTTAAGG
41367168 TTTAAGGG
1 TTTAA-GG
41367176 TTTAAGG
1 TTTAAGG
41367183 TTTAAGG
1 TTTAAGG
*
41367190 TTTTAGG
1 TTTAAGG
41367197 TTTAA
1 TTTAA
41367202 ATTAGTTTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
6 5 0.17
7 19 0.63
8 6 0.20
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (7 bp):
TTTAAGG
Found at i:41367302 original size:162 final size:162
Alignment explanation
Indices: 41367083--41367835 Score: 1443
Period size: 162 Copynumber: 4.6 Consensus size: 162
41367073 TTTTAAGTTA
41367083 AGGGTTTAGGGTTTTTAATTAAATTAGTTTAGAGTTTTTAAGTTAAGGGTTTAAGGTTTTTAAGT
1 AGGGTTTAGGGTTTTTAATTAAATT-GTTTAGAGTTTTTAAGTTAAGGGTTTAAGGTTTTTAAGT
41367148 TAAGGGTTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTTAAGGTTTTAGGTTTAAATTAGTTTAGG
65 TAAGGGTTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTTAAGGTTTTAGGTTTAAATTAGTTTAGG
41367213 GTTTTAGAGTTTTTAAGTTAAGGGTTAGGGTTT
130 GTTTTAGAGTTTTTAAGTTAAGGGTTAGGGTTT
41367246 AGGGTTTAGGGTTTTTAATTAAATTGTTTAGAGTTTTTAAGTTAAGGGTTTAAGGTTTTTAAGTT
1 AGGGTTTAGGGTTTTTAATTAAATTGTTTAGAGTTTTTAAGTTAAGGGTTTAAGGTTTTTAAGTT
41367311 AAGGGTTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTTAAGGTTTTAGGTTTAAATTAGTTTAGGG
66 AAGGGTTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTTAAGGTTTTAGGTTTAAATTAGTTTAGGG
41367376 TTTTAGAGTTTTTAAGTTAAGGGTTAGGGTTT
131 TTTTAGAGTTTTTAAGTTAAGGGTTAGGGTTT
41367408 AGGGTTTAGGGTTTTTAATTAAATTGTTTAGAGTTTTTAAGTTAAGGGTTTAAGGTTTTTAAGTT
1 AGGGTTTAGGGTTTTTAATTAAATTGTTTAGAGTTTTTAAGTTAAGGGTTTAAGGTTTTTAAGTT
41367473 AAGGGTTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTTAAGGTTTTAGGTTTAAATTAGTTTAGGG
66 AAGGGTTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTTAAGGTTTTAGGTTTAAATTAGTTTAGGG
41367538 TTTTAGAGTTTTTAAGTTAAGGGTTAGGGTTT
131 TTTTAGAGTTTTTAAGTTAAGGGTTAGGGTTT
41367570 AGGGTTTAGGGTTTTTAATTAAATTGTTTAGAGTTTTTAAGTTAAGGGTTTAAGGTTTTTAAGTT
1 AGGGTTTAGGGTTTTTAATTAAATTGTTTAGAGTTTTTAAGTTAAGGGTTTAAGGTTTTTAAGTT
41367635 AAGGGTTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTTAAGGTTTTAGGTTTAAATTAGTTTAGGG
66 AAGGGTTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTTAAGGTTTTAGGTTTAAATTAGTTTAGGG
41367700 TTTTAGAGTTTTTAAGTTAAGGGTTAGGGTTT
131 TTTTAGAGTTTTTAAGTTAAGGGTTAGGGTTT
* *
41367732 AGGGTTTAGGGTTTTTAATTAAATTGTTTAGAGTTTTTAAGTTAAGGGTTTATGGTTTTTAATTT
1 AGGGTTTAGGGTTTTTAATTAAATTGTTTAGAGTTTTTAAGTTAAGGGTTTAAGGTTTTTAA-GT
* *
41367797 TAAGGGTTTAGGGTTTTTAATTTTAAGGGTTTAGGGTTT
65 TAAGGG-TTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTT
41367836 TTAATTAAAT
Statistics
Matches: 584, Mismatches: 4, Indels: 3
0.99 0.01 0.01
Matches are distributed among these distances:
162 522 0.89
163 32 0.05
164 30 0.05
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.47
Consensus pattern (162 bp):
AGGGTTTAGGGTTTTTAATTAAATTGTTTAGAGTTTTTAAGTTAAGGGTTTAAGGTTTTTAAGTT
AAGGGTTAGGGTTTTTAAGTTTAAGGGTTTAAGGTTTAAGGTTTTAGGTTTAAATTAGTTTAGGG
TTTTAGAGTTTTTAAGTTAAGGGTTAGGGTTT
Found at i:41367343 original size:14 final size:14
Alignment explanation
Indices: 41367324--41367363 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
41367314 GGTTAGGGTT
41367324 TTTAAGTTTAAGGG
1 TTTAAGTTTAAGGG
*
41367338 TTTAAGGTTTAAGGT
1 TTTAA-GTTTAAGGG
*
41367353 TTTAGGTTTAA
1 TTTAAGTTTAA
41367364 ATTAGTTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (14 bp):
TTTAAGTTTAAGGG
Found at i:41367378 original size:7 final size:7
Alignment explanation
Indices: 41367324--41367363 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
41367314 GGTTAGGGTT
41367324 TTTAA-G
1 TTTAAGG
41367330 TTTAAGGG
1 TTTAA-GG
41367338 TTTAAGG
1 TTTAAGG
41367345 TTTAAGG
1 TTTAAGG
*
41367352 TTTTAGG
1 TTTAAGG
41367359 TTTAA
1 TTTAA
41367364 ATTAGTTTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
6 5 0.17
7 19 0.63
8 6 0.20
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (7 bp):
TTTAAGG
Found at i:41367505 original size:14 final size:14
Alignment explanation
Indices: 41367486--41367525 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
41367476 GGTTAGGGTT
41367486 TTTAAGTTTAAGGG
1 TTTAAGTTTAAGGG
*
41367500 TTTAAGGTTTAAGGT
1 TTTAA-GTTTAAGGG
*
41367515 TTTAGGTTTAA
1 TTTAAGTTTAA
41367526 ATTAGTTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (14 bp):
TTTAAGTTTAAGGG
Found at i:41367540 original size:7 final size:7
Alignment explanation
Indices: 41367486--41367525 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
41367476 GGTTAGGGTT
41367486 TTTAA-G
1 TTTAAGG
41367492 TTTAAGGG
1 TTTAA-GG
41367500 TTTAAGG
1 TTTAAGG
41367507 TTTAAGG
1 TTTAAGG
*
41367514 TTTTAGG
1 TTTAAGG
41367521 TTTAA
1 TTTAA
41367526 ATTAGTTTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
6 5 0.17
7 19 0.63
8 6 0.20
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (7 bp):
TTTAAGG
Found at i:41367667 original size:14 final size:14
Alignment explanation
Indices: 41367648--41367687 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
41367638 GGTTAGGGTT
41367648 TTTAAGTTTAAGGG
1 TTTAAGTTTAAGGG
*
41367662 TTTAAGGTTTAAGGT
1 TTTAA-GTTTAAGGG
*
41367677 TTTAGGTTTAA
1 TTTAAGTTTAA
41367688 ATTAGTTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (14 bp):
TTTAAGTTTAAGGG
Found at i:41367702 original size:7 final size:7
Alignment explanation
Indices: 41367648--41367687 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
41367638 GGTTAGGGTT
41367648 TTTAA-G
1 TTTAAGG
41367654 TTTAAGGG
1 TTTAA-GG
41367662 TTTAAGG
1 TTTAAGG
41367669 TTTAAGG
1 TTTAAGG
*
41367676 TTTTAGG
1 TTTAAGG
41367683 TTTAA
1 TTTAA
41367688 ATTAGTTTAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
6 5 0.17
7 19 0.63
8 6 0.20
ACGTcount: A:0.28, C:0.00, G:0.25, T:0.47
Consensus pattern (7 bp):
TTTAAGG
Found at i:41367776 original size:23 final size:22
Alignment explanation
Indices: 41367732--41367904 Score: 181
Period size: 23 Copynumber: 7.7 Consensus size: 22
41367722 GTTAGGGTTT
41367732 AGGGTTTAGGGTTTTTAATTAA
1 AGGGTTTAGGGTTTTTAATTAA
** *
41367754 ATTGTTTAGAGTTTTTAAGTT-A
1 AGGGTTTAGGGTTTTTAA-TTAA
* *
41367776 AGGGTTTATGGTTTTTAATTTTA
1 AGGGTTTAGGGTTTTTAA-TTAA
*
41367799 AGGGTTTAGGGTTTTTAATTTTA
1 AGGGTTTAGGGTTTTTAA-TTAA
41367822 AGGGTTTAGGGTTTTTAATTAA
1 AGGGTTTAGGGTTTTTAATTAA
**
41367844 ATTAGTTTAGGG-TTTTAAGTT-A
1 A-GGGTTTAGGGTTTTTAA-TTAA
* *
41367866 AGGGTTTAGGATTTTTAATTTTA
1 AGGGTTTAGGGTTTTTAA-TTAA
41367889 AGGGTTTAGGGTTTTT
1 AGGGTTTAGGGTTTTT
41367905 TAGTAATAAC
Statistics
Matches: 128, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
21 7 0.05
22 52 0.41
23 69 0.54
ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51
Consensus pattern (22 bp):
AGGGTTTAGGGTTTTTAATTAA
Found at i:41367803 original size:67 final size:66
Alignment explanation
Indices: 41367732--41367904 Score: 188
Period size: 67 Copynumber: 2.6 Consensus size: 66
41367722 GTTAGGGTTT
** * *
41367732 AGGGTTTAGGGTTTTTAATTAAATTGTTTAGAGTTTTTAAGTT-AA-GGGTTTATGGTTTTTAAT
1 AGGGTTTAGGGTTTTTAATTAAAGGGTTTAGAGTTTTTAA-TTAAATGAGTTTA-GGGTTTTAA-
*
41367795 TTTA
63 GTTA
* * *
41367799 AGGGTTTAGGGTTTTTAATTTTAAGGGTTTAGGGTTTTTAATTAAATTAGTTTAGGGTTTTAAGT
1 AGGGTTTAGGGTTTTTAA-TTAAAGGGTTTAGAGTTTTTAATTAAATGAGTTTAGGGTTTTAAGT
41367864 TA
65 TA
* * *
41367866 AGGGTTTAGGATTTTTAATTTTAAGGGTTTAGGGTTTTT
1 AGGGTTTAGGGTTTTTAA-TTAAAGGGTTTAGAGTTTTT
41367905 TAGTAATAAC
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
67 61 0.65
68 28 0.30
69 5 0.05
ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51
Consensus pattern (66 bp):
AGGGTTTAGGGTTTTTAATTAAAGGGTTTAGAGTTTTTAATTAAATGAGTTTAGGGTTTTAAGTT
A
Found at i:41367836 original size:90 final size:90
Alignment explanation
Indices: 41367732--41367904 Score: 305
Period size: 90 Copynumber: 1.9 Consensus size: 90
41367722 GTTAGGGTTT
*
41367732 AGGGTTTAGGGTTTTTAATTAAATT-GTTTAGAGTTTTTAAGTTAAGGGTTTATGG-TTTTTAAT
1 AGGGTTTAGGGTTTTTAATTAAATTAGTTTAG-GGTTTTAAGTTAAGGGTTTA-GGATTTTTAAT
41367795 TTTAAGGGTTTAGGGTTTTTAATTTTA
64 TTTAAGGGTTTAGGGTTTTTAATTTTA
41367822 AGGGTTTAGGGTTTTTAATTAAATTAGTTTAGGGTTTTAAGTTAAGGGTTTAGGATTTTTAATTT
1 AGGGTTTAGGGTTTTTAATTAAATTAGTTTAGGGTTTTAAGTTAAGGGTTTAGGATTTTTAATTT
41367887 TAAGGGTTTAGGGTTTTT
66 TAAGGGTTTAGGGTTTTT
41367905 TAGTAATAAC
Statistics
Matches: 80, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
89 2 0.03
90 72 0.90
91 6 0.08
ACGTcount: A:0.24, C:0.00, G:0.25, T:0.51
Consensus pattern (90 bp):
AGGGTTTAGGGTTTTTAATTAAATTAGTTTAGGGTTTTAAGTTAAGGGTTTAGGATTTTTAATTT
TAAGGGTTTAGGGTTTTTAATTTTA
Found at i:41368400 original size:18 final size:18
Alignment explanation
Indices: 41368374--41368416 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
41368364 GACTCGGAAA
* *
41368374 AGGAAACATATAAGGGTT
1 AGGAAACATAAAAGGGCT
*
41368392 AGGATACATAAAAGGGCT
1 AGGAAACATAAAAGGGCT
41368410 AGGAAAC
1 AGGAAAC
41368417 GCACTTGGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGAAACATAAAAGGGCT
Found at i:41369074 original size:7 final size:7
Alignment explanation
Indices: 41369064--41369089 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
41369054 TTATATACAT
41369064 AATACTA
1 AATACTA
41369071 AATACTA
1 AATACTA
41369078 AATACTA
1 AATACTA
41369085 AATAC
1 AATAC
41369090 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:41370325 original size:22 final size:22
Alignment explanation
Indices: 41370303--41370357 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
41370293 ATTTGGAAGG
* *
41370303 AATTTAAGAGCAGATTGAGAGGA
1 AATTT-AGAGCAAACTGAGAGGA
*
41370326 AATTTAGAGGAAACTGAGAGGA
1 AATTTAGAGCAAACTGAGAGGA
41370348 AATTTGAGAG
1 AATTT-AGAG
41370358 AGGATGAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 19 0.68
23 9 0.32
ACGTcount: A:0.44, C:0.04, G:0.31, T:0.22
Consensus pattern (22 bp):
AATTTAGAGCAAACTGAGAGGA
Found at i:41372670 original size:60 final size:60
Alignment explanation
Indices: 41372577--41372696 Score: 222
Period size: 60 Copynumber: 2.0 Consensus size: 60
41372567 CAATAAAAAC
41372577 TTATTAAAAAAAACTATATCTAAAATAGTCTGATGTCCAAGGTAATGCTCTGAATGCCGA
1 TTATTAAAAAAAACTATATCTAAAATAGTCTGATGTCCAAGGTAATGCTCTGAATGCCGA
* *
41372637 TTATTAAAAAAAACTATATCTAAAATAGTCTGATGTCCTAGGTAATGTTCTGAATGCCGA
1 TTATTAAAAAAAACTATATCTAAAATAGTCTGATGTCCAAGGTAATGCTCTGAATGCCGA
41372697 GTTCAGGTCT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (60 bp):
TTATTAAAAAAAACTATATCTAAAATAGTCTGATGTCCAAGGTAATGCTCTGAATGCCGA
Found at i:41373662 original size:13 final size:13
Alignment explanation
Indices: 41373644--41373668 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41373634 CTTATTTCTA
41373644 ACTTTTACACCTC
1 ACTTTTACACCTC
41373657 ACTTTTACACCT
1 ACTTTTACACCT
41373669 TAAGCCTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (13 bp):
ACTTTTACACCTC
Found at i:41374045 original size:112 final size:112
Alignment explanation
Indices: 41373885--41374161 Score: 299
Period size: 112 Copynumber: 2.5 Consensus size: 112
41373875 AAATCTCAAG
* * * *
41373885 ACCAAAGCGCATCGTTTTGGTCTTGATGTATACTAGAATTAGTGGCGCTTATGATAAA-ATGCCG
1 ACCAAAACGCATCGTTTT-GTCTAGATGTATATTAGAATTAGTGGCGCTTATGA-AAACACGCCG
* * * *
41373949 CTAAAGGAAGTATTAGCGGCGCATTGTCG-AAAGTGCCGCAACA-ATTTTA
64 CTAAAGCAAGTATTAGCGGCGC-TT-ACGAAAAGCGCCGCAACATATGTTA
* * * * * * * *
41373998 ACGAAAATGCATCGTTTTGTCTCGCTGTATATTAGCATTAGTGGCGCTTACGAAAACCCGTCGCT
1 ACCAAAACGCATCGTTTTGTCTAGATGTATATTAGAATTAGTGGCGCTTATGAAAACACGCCGCT
*
41374063 AAAGCAAGTATTAGCGGCGCTTACGAAAAGCGCCGCAATATATGTTA
66 AAAGCAAGTATTAGCGGCGCTTACGAAAAGCGCCGCAACATATGTTA
** * * *
41374110 ACCAAAACGCAGAGTTTGGTCTAGAGGTATATTAGAATTTGTGGCGCTTATG
1 ACCAAAACGCATCGTTTTGTCTAGATGTATATTAGAATTAGTGGCGCTTATG
41374162 GGTAAACGCC
Statistics
Matches: 134, Mismatches: 27, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
110 2 0.01
111 17 0.13
112 100 0.75
113 15 0.11
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (112 bp):
ACCAAAACGCATCGTTTTGTCTAGATGTATATTAGAATTAGTGGCGCTTATGAAAACACGCCGCT
AAAGCAAGTATTAGCGGCGCTTACGAAAAGCGCCGCAACATATGTTA
Found at i:41374394 original size:113 final size:113
Alignment explanation
Indices: 41374168--41374458 Score: 311
Period size: 113 Copynumber: 2.5 Consensus size: 113
41374158 TATGGGTAAA
* * ** * *
41374168 CGCCGCAAAATATCCTAACCAAAGCGCACCATTTTGGTCTTG-GTGTATGTTACAGTTAGTGGCG
1 CGCCGCAAAATATCCTAACCAAAACGCA--AGTTTGGTCTTGAG-GTATACTAGAATTAGTGGCG
* * *
41374232 CTTAAGGGAAAACACCGCTAAAGCATAATATTAGTGGCATTTTGTGAGAAG
63 CTAAAGGGAAAACACCGCTAAAGCATAATATTAGCGGCAGTTTGTGAGAAG
*
41374283 CGCCGCAAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGAATTAGTGGCGC-
1 CGCCGCAAAATATCCTAACCAAAACGCA-AGTTTGGTCTTGAGGTATACTAGAATTAGTGGCGCT
* * * * *
41374347 AAAGGGAACACGCCGCTAAGGCATACTATTAGCGGCGCGTTTG-GAGAAG
65 AAAGGGAAAACACCGCTAAAGCATAATATTAGCGGC-AGTTTGTGAGAAG
* * * *
41374396 CGCCGCAAAATTTCGTAACCAAAACGCAACGTTTTTGTCTTGATGTATAC-AGTAATTAGTGGC
1 CGCCGCAAAATATCCTAACCAAAACGCAA-G-TTTGGTCTTGAGGTATACTAG-AATTAGTGGC
41374459 ACATACTGGA
Statistics
Matches: 151, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
112 1 0.01
113 65 0.43
114 58 0.38
115 27 0.18
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (113 bp):
CGCCGCAAAATATCCTAACCAAAACGCAAGTTTGGTCTTGAGGTATACTAGAATTAGTGGCGCTA
AAGGGAAAACACCGCTAAAGCATAATATTAGCGGCAGTTTGTGAGAAG
Found at i:41374521 original size:196 final size:197
Alignment explanation
Indices: 41374300--41374656 Score: 504
Period size: 197 Copynumber: 1.8 Consensus size: 197
41374290 AAATATCTTA
* *
41374300 ACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGAATTAGTGGCGC-AAAGGGA-ACACGCCG-
1 ACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGAATTAGTGACGCTAAAGGGAGA-ACACCGT
* * * *
41374362 CTAAGGCATACTATTAGCGGCGCGTTTGGAGAAGCGCCGCAAAATTTCGTAACCAAAACGCAACG
65 CTAA-GCATACTATTAGCGGCGCATTTGGAGAAGCACCGCAAAATATAGTAACCAAAACGCAACG
** *
41374427 TTTTTGTCTTGATGTATACAGTAATTAGTGGCACATACTGGAAAATGCCACTAAAGCATAGTGTA
129 TTTAAGTCTTGATGTATACAGGAATTAGTGGCACATACTGGAAAATGCCACTAAAGCATAGTGTA
41374492 CCTC
194 CCTC
* * * * *
41374496 ACCAAAACGCAGAGTTTTGTCTTGAGGTATATTAGAATTAGTGACGCTTATGGGAGAACACCGTT
1 ACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGAATTAGTGACGCTAAAGGGAGAACACCGTC
* * * *
41374561 TAAGCATACTATTAGCGGCGCATTTTGAGAAGCACTGCAAAATATATTAACCAAAACGCAGCGTT
66 TAAGCATACTATTAGCGGCGCATTTGGAGAAGCACCGCAAAATATAGTAACCAAAACGCAACGTT
*
41374626 TAAGTCTTGATGTATACTGGAATTAGTGGCA
131 TAAGTCTTGATGTATACAGGAATTAGTGGCA
41374657 TCCACGAGAA
Statistics
Matches: 139, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
196 44 0.32
197 91 0.65
198 4 0.03
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (197 bp):
ACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGAATTAGTGACGCTAAAGGGAGAACACCGTC
TAAGCATACTATTAGCGGCGCATTTGGAGAAGCACCGCAAAATATAGTAACCAAAACGCAACGTT
TAAGTCTTGATGTATACAGGAATTAGTGGCACATACTGGAAAATGCCACTAAAGCATAGTGTACC
TC
Found at i:41376844 original size:9 final size:9
Alignment explanation
Indices: 41376818--41377491 Score: 660
Period size: 9 Copynumber: 76.4 Consensus size: 9
41376808 CACAAATTAA
41376818 ATAACTTAC
1 ATAACTTAC
41376827 ATTAA-TTAC
1 A-TAACTTAC
41376836 ATAACTTAC
1 ATAACTTAC
* * *
41376845 AAAAATTAA
1 ATAACTTAC
41376854 ATAA---A-
1 ATAACTTAC
41376859 ATAACTTAC
1 ATAACTTAC
41376868 ATAACTTAC
1 ATAACTTAC
* *
41376877 ATAAATTAA
1 ATAACTTAC
41376886 ATAACTTAC
1 ATAACTTAC
41376895 ATAACTTAC
1 ATAACTTAC
* *
41376904 ATAAATTAA
1 ATAACTTAC
41376913 ATAACTTAC
1 ATAACTTAC
41376922 ATAACTTAC
1 ATAACTTAC
* *
41376931 ATAAATTAA
1 ATAACTTAC
41376940 ATAACTTAC
1 ATAACTTAC
41376949 ATAACTTAC
1 ATAACTTAC
* *
41376958 ATAAATTAA
1 ATAACTTAC
41376967 ATAACTTAC
1 ATAACTTAC
41376976 ATAACTTAC
1 ATAACTTAC
* *
41376985 ATAAATTAA
1 ATAACTTAC
41376994 ATAACTTAC
1 ATAACTTAC
41377003 ATAACTTAC
1 ATAACTTAC
* *
41377012 ATAAATTAA
1 ATAACTTAC
41377021 ATAACTTAC
1 ATAACTTAC
41377030 ATAACTTAC
1 ATAACTTAC
* *
41377039 ATAAATTAA
1 ATAACTTAC
41377048 ATAACTTAC
1 ATAACTTAC
41377057 ATTAA-TTAC
1 A-TAACTTAC
41377066 ATAACTTAC
1 ATAACTTAC
* * *
41377075 AAAAATTAA
1 ATAACTTAC
41377084 ATAACTTAC
1 ATAACTTAC
*
41377093 ATAAATTAC
1 ATAACTTAC
* *
41377102 ATAAATTAA
1 ATAACTTAC
41377111 ATAACTTAC
1 ATAACTTAC
41377120 ATAACTTAC
1 ATAACTTAC
*
41377129 ATGAA-TTAA
1 AT-AACTTAC
41377138 ATAACTTAC
1 ATAACTTAC
41377147 ATAACTTAC
1 ATAACTTAC
41377156 ATAA---A-
1 ATAACTTAC
*
41377161 TTAACTTAC
1 ATAACTTAC
*
41377170 ATAACTAAC
1 ATAACTTAC
41377179 ATAACTTAC
1 ATAACTTAC
* *
41377188 ATAAATTAA
1 ATAACTTAC
41377197 ATAACTTAC
1 ATAACTTAC
41377206 ATAACTTAC
1 ATAACTTAC
* *
41377215 ATAAATTAA
1 ATAACTTAC
41377224 ATAACTTAC
1 ATAACTTAC
41377233 ATTAA-TTAC
1 A-TAACTTAC
41377242 ATAACTTAC
1 ATAACTTAC
* * *
41377251 AAAAATTAA
1 ATAACTTAC
41377260 ATAAC-T--
1 ATAACTTAC
41377266 -TAACTTAC
1 ATAACTTAC
41377274 ATAACTTAC
1 ATAACTTAC
* *
41377283 ATAAATTAA
1 ATAACTTAC
41377292 ATAACTTAC
1 ATAACTTAC
41377301 ATAACTTAC
1 ATAACTTAC
*
41377310 ATAAATTA-
1 ATAACTTAC
41377318 AGTAACTTAC
1 A-TAACTTAC
41377328 ATAACTTAC
1 ATAACTTAC
* *
41377337 ATAAATTAA
1 ATAACTTAC
41377346 ATAACTTAC
1 ATAACTTAC
41377355 ATTAA-TTAC
1 A-TAACTTAC
41377364 ATAACTTAC
1 ATAACTTAC
* * *
41377373 AAAAATTAA
1 ATAACTTAC
41377382 ATAACTTAC
1 ATAACTTAC
41377391 ATAACTTAC
1 ATAACTTAC
*
41377400 ATTAATATTATAC
1 A-T-A-ACT-TAC
*
41377413 ACAACTTAC
1 ATAACTTAC
*
41377422 ATAA--TAA
1 ATAACTTAC
*
41377429 ATTACTTAC
1 ATAACTTAC
41377438 ATAACTTAC
1 ATAACTTAC
*
41377447 ATTACTTAC
1 ATAACTTAC
41377456 AGT-ACTTAC
1 A-TAACTTAC
41377465 ATAA--TAC
1 ATAACTTAC
41377472 ATAA--TAC
1 ATAACTTAC
41377479 ATAACTTAC
1 ATAACTTAC
41377488 ATAA
1 ATAA
41377492 TACATAAAAA
Statistics
Matches: 545, Mismatches: 86, Indels: 68
0.78 0.12 0.10
Matches are distributed among these distances:
5 11 0.02
6 3 0.01
7 19 0.03
8 19 0.03
9 466 0.86
10 19 0.03
11 2 0.00
12 2 0.00
13 4 0.01
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:41377180 original size:23 final size:22
Alignment explanation
Indices: 41377135--41377218 Score: 78
Period size: 23 Copynumber: 3.7 Consensus size: 22
41377125 TTACATGAAT
*
41377135 TAAATAACTTACATAACTTACA
1 TAAATAACTTACATAACTAACA
41377157 TAAATTAACTTACATAACTAACA
1 TAAA-TAACTTACATAACTAACA
* * * * * *
41377180 TAACTTACATAAATTAAATAACT
1 TAAATAACTTACA-TAACTAACA
*
41377203 TACATAACTTACATAA
1 TAAATAACTTACATAA
41377219 ATTAAATAAC
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
22 13 0.27
23 35 0.73
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (22 bp):
TAAATAACTTACATAACTAACA
Found at i:41377474 original size:7 final size:7
Alignment explanation
Indices: 41377462--41377498 Score: 56
Period size: 7 Copynumber: 5.0 Consensus size: 7
41377452 TTACAGTACT
41377462 TACATAA
1 TACATAA
41377469 TACATAA
1 TACATAA
41377476 TACATAA
1 TACATAA
41377483 CTTACATAA
1 --TACATAA
41377492 TACATAA
1 TACATAA
41377499 AAATATGTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 21 0.75
9 7 0.25
ACGTcount: A:0.54, C:0.16, G:0.00, T:0.30
Consensus pattern (7 bp):
TACATAA
Found at i:41383291 original size:41 final size:41
Alignment explanation
Indices: 41383146--41383310 Score: 186
Period size: 42 Copynumber: 4.0 Consensus size: 41
41383136 AGCGGCATTT
* * * * * * * *
41383146 TTATACAAAGCGCCGTTAAAGAACATCTTCTTTCGCGACGC
1 TTATAAAAAACGCCGCTAAAGACCATGTTCTTTAGTGGCGC
* * * * *
41383187 TTAATAAAAAACGCCACTAAAGATCATGTTCTTCAGCGGTGC
1 TT-ATAAAAAACGCCGCTAAAGACCATGTTCTTTAGTGGCGC
41383229 TTATAAAAAAACGCCGCTAAAGACCATGTTCTTTAGTGGCGC
1 TTAT-AAAAAACGCCGCTAAAGACCATGTTCTTTAGTGGCGC
*
41383271 TTATAAAAAACACCGCTAAAGACCATGTTCTTTAGTGGCG
1 TTATAAAAAACGCCGCTAAAGACCATGTTCTTTAGTGGCG
41383311 TTTTTTTCTA
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
41 39 0.37
42 67 0.63
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (41 bp):
TTATAAAAAACGCCGCTAAAGACCATGTTCTTTAGTGGCGC
Found at i:41386114 original size:20 final size:20
Alignment explanation
Indices: 41386089--41386131 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
41386079 TTAACATTAT
41386089 CTAGATAAAAATCAAAAGTA
1 CTAGATAAAAATCAAAAGTA
41386109 CTAGATAAAAATCAAAAGTA
1 CTAGATAAAAATCAAAAGTA
41386129 CTA
1 CTA
41386132 TTAGTTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.58, C:0.12, G:0.09, T:0.21
Consensus pattern (20 bp):
CTAGATAAAAATCAAAAGTA
Found at i:41392383 original size:21 final size:21
Alignment explanation
Indices: 41392347--41392392 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
41392337 AGGTCGCCTC
*
41392347 GTAGAGATCGGAGGAGTG-GGA
1 GTAGAGATCGCAGGAG-GAGGA
*
41392368 GTAGAGATCGCCGGAGGAGGA
1 GTAGAGATCGCAGGAGGAGGA
41392389 GTAG
1 GTAG
41392393 GTCGCCTCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.28, C:0.09, G:0.50, T:0.13
Consensus pattern (21 bp):
GTAGAGATCGCAGGAGGAGGA
Found at i:41401151 original size:39 final size:40
Alignment explanation
Indices: 41400947--41401169 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
41400937 TTGAATGCTG
* * * * * *
41400947 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
41400987 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
41401027 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
41401067 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
41401107 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
41401146 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
41401170 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:41401189 original size:79 final size:80
Alignment explanation
Indices: 41401022--41401204 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
41401012 GTGCGAGATA
** * *
41401022 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
41401087 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
41401102 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
41401166 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
41401181 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
41401205 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:41415791 original size:24 final size:24
Alignment explanation
Indices: 41415763--41415808 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
41415753 AGTTCACCTA
41415763 AGGGTTCGCATATAACATATATAT
1 AGGGTTCGCATATAACATATATAT
*
41415787 AGGGTTCGCATATATCATATAT
1 AGGGTTCGCATATAACATATAT
41415809 GCATGTACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (24 bp):
AGGGTTCGCATATAACATATATAT
Found at i:41415949 original size:34 final size:34
Alignment explanation
Indices: 41415883--41416067 Score: 235
Period size: 34 Copynumber: 5.4 Consensus size: 34
41415873 GGTTTCGCAT
* * * *
41415883 AGTTCACATGTACATAGGGTTCACATATATATAC
1 AGTTCGCATGTACCTAGGGTTCACACACATATAC
* * *
41415917 AATTCGCATCTACCTAGGGTTCGCACACATATAC
1 AGTTCGCATGTACCTAGGGTTCACACACATATAC
*
41415951 AGTTCGCATGTACCTAGGGTTCGCACACATATAC
1 AGTTCGCATGTACCTAGGGTTCACACACATATAC
* * * *
41415985 AGTCCACATGTTACCTAGGGTTCATACACATGTAC
1 AGTTCGCATG-TACCTAGGGTTCACACACATATAC
*
41416020 AGTTCACATGTCACCTAGGGTTCACACACATATAC
1 AGTTCGCATGT-ACCTAGGGTTCACACACATATAC
41416055 AGTTCGCATGTAC
1 AGTTCGCATGTAC
41416068 TTGCCATAAA
Statistics
Matches: 131, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
34 70 0.53
35 61 0.47
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (34 bp):
AGTTCGCATGTACCTAGGGTTCACACACATATAC
Found at i:41416845 original size:43 final size:43
Alignment explanation
Indices: 41416791--41417016 Score: 251
Period size: 43 Copynumber: 5.3 Consensus size: 43
41416781 ATATTTTTTT
* * * *
41416791 AAACGCCGCTAAAGGTTATGTTCTTTAACGGCGCTTTTTCAAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCAC
* *
41416834 AAACGCTGCTAAAGATCATGTTCCTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCAC
* * *
41416877 AAATGCCGCTAAAGATCATGTTCTTTAGCGGTGCTTTTTCCAT
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCAC
* * **
41416920 AAACGCTGCTAAAGATCATGTTCTTTAGCGGCGCTTCTTCTGC
1 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCAC
* * *
41416963 AAACGCCAG-TAAATG-CCATGTTCTTTTAGCGGC-ATTTTTACAC
1 AAACGCC-GCTAAA-GATCATGTTC-TTTAGCGGCGCTTTTTCCAC
*
41417006 AAACACCGCTA
1 AAACGCCGCTA
41417017 TTTGTTTGGT
Statistics
Matches: 153, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
42 1 0.01
43 141 0.92
44 11 0.07
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTTTTCCAC
Found at i:41417392 original size:21 final size:21
Alignment explanation
Indices: 41417366--41417414 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
41417356 TTTGCTCTGC
*
41417366 TCTGCTTCCCTCGCTGCAGCA
1 TCTGCTTCCCTCGATGCAGCA
* *
41417387 TCTGCTTCTCTCGATGCCGCA
1 TCTGCTTCCCTCGATGCAGCA
41417408 TCTGCTT
1 TCTGCTT
41417415 TAAGTTGTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.08, C:0.39, G:0.18, T:0.35
Consensus pattern (21 bp):
TCTGCTTCCCTCGATGCAGCA
Found at i:41422884 original size:7 final size:7
Alignment explanation
Indices: 41422874--41422910 Score: 56
Period size: 7 Copynumber: 5.0 Consensus size: 7
41422864 TGACATATTT
41422874 TTATGTA
1 TTATGTA
41422881 TTATGTAA
1 TTATGT-A
41422889 GTTATGTA
1 -TTATGTA
41422897 TTATGTA
1 TTATGTA
41422904 TTATGTA
1 TTATGTA
41422911 AGTACTGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 20 0.71
8 2 0.07
9 6 0.21
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.54
Consensus pattern (7 bp):
TTATGTA
Found at i:41422895 original size:9 final size:9
Alignment explanation
Indices: 41422881--41423387 Score: 462
Period size: 9 Copynumber: 57.4 Consensus size: 9
41422871 TTTTTATGTA
41422881 TTATGTAAG
1 TTATGTAAG
41422890 TTATGT-A-
1 TTATGTAAG
41422897 TTATGT-A-
1 TTATGTAAG
41422904 TTATGTAAG
1 TTATGTAAG
41422913 -TACTGTAAG
1 TTA-TGTAAG
*
41422922 TAATGTAAG
1 TTATGTAAG
41422931 TTATGTAAG
1 TTATGTAAG
* *
41422940 TAAT-TTA-
1 TTATGTAAG
41422947 TTATGTAAG
1 TTATGTAAG
* *
41422956 TTGTGTATAATA
1 TTATG--TAA-G
41422968 TTAATGTAAG
1 TT-ATGTAAG
41422978 TTATGTAAG
1 TTATGTAAG
* *
41422987 TTATTTAAT
1 TTATGTAAG
*
41422996 TTTTGTAAG
1 TTATGTAAG
41423005 TTATGTAA-
1 TTATGTAAG
41423013 TTAATGTAAG
1 TT-ATGTAAG
* *
41423023 TTATTTAAT
1 TTATGTAAG
41423032 TTATGTAAG
1 TTATGTAAG
41423041 TTATGTAAG
1 TTATGTAAG
* *
41423050 TTATTTAAT
1 TTATGTAAG
*
41423059 TTTTGTAAG
1 TTATGTAAG
41423068 TTATGTAA-
1 TTATGTAAG
41423076 TTAATGTAAG
1 TT-ATGTAAG
* *
41423086 TTATTTAAT
1 TTATGTAAG
41423095 TTATGTAAG
1 TTATGTAAG
41423104 TTATGTAAG
1 TTATGTAAG
*
41423113 TTACT-TAAT
1 TTA-TGTAAG
41423122 TTATGTAAG
1 TTATGTAAG
41423131 TTATGTAAG
1 TTATGTAAG
* *
41423140 TTATTTAAT
1 TTATGTAAG
41423149 TTATGTAAG
1 TTATGTAAG
41423158 TTATGTAAG
1 TTATGTAAG
41423167 ---T-TAAG
1 TTATGTAAG
* *
41423172 TTATTTAAT
1 TTATGTAAG
*
41423181 TTTTGTAAG
1 TTATGTAAG
41423190 TTATGTAA-
1 TTATGTAAG
41423198 TTAATGTAAG
1 TT-ATGTAAG
* *
41423208 TTATTTAAT
1 TTATGTAAG
41423217 TTATGTAAG
1 TTATGTAAG
41423226 TTATGTAAG
1 TTATGTAAG
* *
41423235 TTATTTAAT
1 TTATGTAAG
41423244 TTATGTAAG
1 TTATGTAAG
*
41423253 TTATGTTAG
1 TTATGTAAG
41423262 TTATGTAAG
1 TTATGTAAG
*
41423271 ---T-TAAT
1 TTATGTAAG
41423276 TTATGTAAG
1 TTATGTAAG
41423285 TTATGTAAG
1 TTATGTAAG
*
41423294 TTATTTAA-
1 TTATGTAAG
41423302 TTCATGTAAG
1 TT-ATGTAAG
41423312 TTATGTAAG
1 TTATGTAAG
* *
41423321 TTATTTAAT
1 TTATGTAAG
*
41423330 TTATGTAAT
1 TTATGTAAG
41423339 TTATGTAAG
1 TTATGTAAG
* *
41423348 TTATTTAAT
1 TTATGTAAG
*
41423357 TTTTGTAAG
1 TTATGTAAG
41423366 TTATGTAA-
1 TTATGTAAG
41423374 TTAATGTAAG
1 TT-ATGTAAG
41423384 TTAT
1 TTAT
41423388 TTAATTTGTG
Statistics
Matches: 403, Mismatches: 65, Indels: 60
0.76 0.12 0.11
Matches are distributed among these distances:
5 7 0.02
6 2 0.00
7 16 0.04
8 21 0.05
9 333 0.83
10 14 0.03
11 6 0.01
12 2 0.00
13 2 0.00
ACGTcount: A:0.34, C:0.01, G:0.15, T:0.50
Consensus pattern (9 bp):
TTATGTAAG
Found at i:41428360 original size:23 final size:23
Alignment explanation
Indices: 41428326--41429038 Score: 458
Period size: 23 Copynumber: 31.3 Consensus size: 23
41428316 GAAATTTGAT
*
41428326 AGTGCTGCAAATTGAAGTGTTTA
1 AGTGCTGTAAATTGAAGTGTTTA
*
41428349 AGTGCTGTAAATTGAAGTATTT-
1 AGTGCTGTAAATTGAAGTGTTTA
* *
41428371 AGTTGCTGGAAATTG-AGATGTTTT
1 AG-TGCTGTAAATTGAAG-TGTTTA
* *
41428395 A-TCGCTGT-AATTGAGGTGTATA
1 AGT-GCTGTAAATTGAAGTGTTTA
* * *
41428417 AATGTTGTTAATTGATA-TGTTTA
1 AGTGCTGTAAATTGA-AGTGTTTA
* *
41428440 AGTGCTGCAAATTGAAGTATTT-
1 AGTGCTGTAAATTGAAGTGTTTA
* *
41428462 AGTTGCTGGAAATTG-AGATGTTTT
1 AG-TGCTGTAAATTGAAG-TGTTTA
* *
41428486 A-TCGCTGT-AATTGAGGTGTATA
1 AGT-GCTGTAAATTGAAGTGTTTA
* * *
41428508 AATGTTGTTAATTGATA-TGTTTA
1 AGTGCTGTAAATTGA-AGTGTTTA
* *
41428531 AGTGCTGCAAATTTAAGTGTTTA
1 AGTGCTGTAAATTGAAGTGTTTA
* *
41428554 AATGTTGTAAATTGAAGTGTTTA
1 AGTGCTGTAAATTGAAGTGTTTA
* *
41428577 AGTGCTGCAAATTGAAGT-TTTT
1 AGTGCTGTAAATTGAAGTGTTTA
*
41428599 AGTTGCTAG-AAATTG-AGATGTTTT
1 AG-TGCT-GTAAATTGAAG-TGTTTA
* * *
41428623 ATTGCTGT-AATTGAGGTGTATA
1 AGTGCTGTAAATTGAAGTGTTTA
* * *
41428645 AATGTTGTTAATTGATA-TG-TTA
1 AGTGCTGTAAATTGA-AGTGTTTA
* *
41428667 AGTGCTGCAAATTTAAGTGTTTA
1 AGTGCTGTAAATTGAAGTGTTTA
*
41428690 AATGCTGTAAATTGAAGTGTTTA
1 AGTGCTGTAAATTGAAGTGTTTA
* *
41428713 AGTGCTGCAAATTGAAGTATTT-
1 AGTGCTGTAAATTGAAGTGTTTA
* *
41428735 AGTTGCTGGAAATTG-AGATGTTTT
1 AG-TGCTGTAAATTGAAG-TGTTTA
* *
41428759 A-TCGCTGT-AATTGAGGTGTATA
1 AGT-GCTGTAAATTGAAGTGTTTA
* * *
41428781 AATGTTGTTAATTGATA-TGTTTA
1 AGTGCTGTAAATTGA-AGTGTTTA
* *
41428804 AGTGCTGCAAATTTAAGTGTTTA
1 AGTGCTGTAAATTGAAGTGTTTA
*
41428827 AATGCTGTAAATTGAAGTGTTTA
1 AGTGCTGTAAATTGAAGTGTTTA
* *
41428850 AGTGCTGCAAATTGAAGTATTT-
1 AGTGCTGTAAATTGAAGTGTTTA
* *
41428872 AGTTGCTGGAAATTG-AGATGTTTT
1 AG-TGCTGTAAATTGAAG-TGTTTA
* *
41428896 A-TCGCTGT-AATTGAGGTGTATA
1 AGT-GCTGTAAATTGAAGTGTTTA
* * *
41428918 AATGTTGTTAATTGATA-TGTTTA
1 AGTGCTGTAAATTGA-AGTGTTTA
*
41428941 AGTGCTGCAAATTGAAGTGTTTA
1 AGTGCTGTAAATTGAAGTGTTTA
**
41428964 AGTGCTACAAATTGAAGTGTTT-
1 AGTGCTGTAAATTGAAGTGTTTA
* * *
41428986 AGTTGTTGCAAATTG-AGATGTTTT
1 AG-TGCTGTAAATTGAAG-TGTTTA
*
41429010 A-TCGCTGTAAATTGAAGTGTTAA
1 AGT-GCTGTAAATTGAAGTGTTTA
41429033 AGTGCT
1 AGTGCT
41429039 ACTTTCCATT
Statistics
Matches: 541, Mismatches: 97, Indels: 104
0.73 0.13 0.14
Matches are distributed among these distances:
21 1 0.00
22 122 0.23
23 404 0.75
24 14 0.03
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.41
Consensus pattern (23 bp):
AGTGCTGTAAATTGAAGTGTTTA
Found at i:41428848 original size:91 final size:91
Alignment explanation
Indices: 41428335--41428841 Score: 517
Period size: 91 Copynumber: 5.6 Consensus size: 91
41428325 TAGTGCTGCA
* **
41428335 AATTGA-AGTGTTTAAGTGCTGTAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCG
1 AATTGATA-TGTTTAAGTGCTGCAAATTGAAGTATTTAAATGCTGGAAATTGAGATGTTTTATCG
41428399 CTGTAATTGAGGTGTATAAATGTTGTT
65 CTGTAATTGAGGTGTATAAATGTTGTT
**
41428426 AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGC
1 AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTTAAATGCTGGAAATTGAGATGTTTTATCGC
41428491 TGTAATTGAGGTGTATAAATGTTGTT
66 TGTAATTGAGGTGTATAAATGTTGTT
* * * * *
41428517 AATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGTTGTAAATTGA-AGTGTTTAAGT-
1 AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTTAAATGCTGGAAATTGAGA-TGTTTTA-TC
* * * * ** * *
41428580 GCTGCAAATTGAAGTTTTTAGTTGCTAG-A
64 GCTG-TAATTGAGGTGTATAAATG-TTGTT
* * * * * * * * ** * *
41428609 AATTGAGATGTTTTATTGCTG-TAATTGAGGTGTATAAATGTTGTTAATTGATATG-TTAAGT-G
1 AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTTAAATGCTGGAAATTGAGATGTTTTA-TCG
* * * * * *
41428671 CTGCAAATTTAAGTGTTTAAATGCTGTA
65 CTG-TAATTGAGGTGTATAAATGTTGTT
**
41428699 AATTGA-AGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCG
1 AATTGATA-TGTTTAAGTGCTGCAAATTGAAGTATTTAAATGCTGGAAATTGAGATGTTTTATCG
41428763 CTGTAATTGAGGTGTATAAATGTTGTT
65 CTGTAATTGAGGTGTATAAATGTTGTT
* * *
41428790 AATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGA
1 AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTTAAATGCTGGAAATTGA
41428842 AGTGTTTAAG
Statistics
Matches: 350, Mismatches: 54, Indels: 24
0.82 0.13 0.06
Matches are distributed among these distances:
89 2 0.01
90 45 0.13
91 259 0.74
92 42 0.12
93 2 0.01
ACGTcount: A:0.30, C:0.05, G:0.23, T:0.42
Consensus pattern (91 bp):
AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTTAAATGCTGGAAATTGAGATGTTTTATCGC
TGTAATTGAGGTGTATAAATGTTGTT
Found at i:41428907 original size:114 final size:112
Alignment explanation
Indices: 41428684--41429038 Score: 371
Period size: 114 Copynumber: 3.1 Consensus size: 112
41428674 CAAATTTAAG
* *
41428684 TGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATTT-AGTTGCTGGAAAT
1 TGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAG-TGCTGCAAAT
* * * ** *
41428748 TGAGATGTTTTA-TCGCT-GTAATTGAGGTGTATAAAT-GTTGTTAATTGATA
65 TGA-A-GTTTTAGTTGCTGGAAATTGAGATGT-TTTATCGCTG-TAATTGA-A
* * * * *
41428798 TGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATT
1 TGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATT
*
41428863 GAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGG
66 GAAGT-TTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGA-A
* * * *
41428912 TGTATAAATGTTGTTAATTGATA-TGTTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTACAAAT
1 TGTTTAAATGCTGTAAATTGA-AGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGCAAAT
* *
41428976 TGAAGTGTTTAGTTGTTGCAAATTGAGATGTTTTATCGCTGTAAATTGAA
65 TGAAGT-TTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGT-AATTGAA
41429026 -GTGTTAAAGTGCT
1 TGT-TTAAA-TGCT
41429039 ACTTTCCATT
Statistics
Matches: 202, Mismatches: 30, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
112 2 0.01
113 7 0.03
114 167 0.83
115 26 0.13
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.41
Consensus pattern (112 bp):
TGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAAGTGCTGCAAATT
GAAGTTTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAA
Found at i:41428920 original size:91 final size:92
Alignment explanation
Indices: 41428328--41429038 Score: 501
Period size: 91 Copynumber: 7.8 Consensus size: 92
41428318 AATTTGATAG
* * * ** * *
41428328 TGCTGCAAATTGA-AGTGTTTAAGTGCTGTAAATTGAAGTATTTAGTTGCTGGAAATTG-AGATG
1 TGCTGGAAATTGAGA-TGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAG-TG
* * * *
41428391 TTTTA-TCGCTG-TAATTGAGGTGTATAAA
64 TTTAAGT-GCTGCAAATTGAAGTGTTTAAA
* ** * * ** * *
41428419 TGTTGTTAATTGATATGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTG-AGATGT
1 TGCTGGAAATTGAGATGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAG-TGT
* * * *
41428483 TTTA-TCGCTG-TAATTGAGGTGTATAAA
65 TTAAGT-GCTGCAAATTGAAGTGTTTAAA
* ** * *
41428510 TGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGTTGTAAATTGAAGTGTT
1 TGCTGGAAATTGAGATGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTT
* **
41428575 TAAGTGCTGCAAATTGAAGTTTTTAGT
66 TAAGTGCTGCAAATTGAAGTGTTTAAA
* * * * * * *
41428602 TGCTAGAAATTGAGATGTTTTATTGCTG-TAATTGAGGTGTATAAATGTTGTTAATTGATA-TG-
1 TGCTGGAAATTGAGATGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGA-AGTGT
*
41428664 TTAAGTGCTGCAAATTTAAGTGTTTAAA
65 TTAAGTGCTGCAAATTGAAGTGTTTAAA
* * ** * *
41428692 TGCTGTAAATTGA-AGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTG-AGATG
1 TGCTGGAAATTGAGA-TGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAG-TG
* * * *
41428755 TTTTA-TCGCTG-TAATTGAGGTGTATAAA
64 TTTAAGT-GCTGCAAATTGAAGTGTTTAAA
* ** * * *
41428783 TGTTGTTAATTGATATGTTTAAGTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTT
1 TGCTGGAAATTGAGATGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTT
* **
41428848 TAAGTGCTGCAAATTGAAGTATTTAGT
66 TAAGTGCTGCAAATTGAAGTGTTTAAA
* * * * *
41428875 TGCTGGAAATTGAGATGTTTTA-TCGCTG-TAATTGAGGTGTATAAATGTTGTTAATTGATA-TG
1 TGCTGGAAATTGAGATGTTTAAGT-GCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGA-AGTG
*
41428937 TTTAAGTGCTGCAAATTGAAGTGTTTAAG
64 TTTAAGTGCTGCAAATTGAAGTGTTTAAA
** * * *
41428966 TGCTACAAATTGA-AGTGTTT-AGTTGTTGCAAATTG-AGATGTTT-TATCGCTGTAAATTGAAG
1 TGCTGGAAATTGAGA-TGTTTAAG-TGCTGCAAATTGAAG-TGTTTAAAT-GTTGTAAATTGAAG
*
41429027 TGTTAAAGTGCT
62 TGTTTAAGTGCT
41429039 ACTTTCCATT
Statistics
Matches: 507, Mismatches: 89, Indels: 47
0.79 0.14 0.07
Matches are distributed among these distances:
89 2 0.00
90 48 0.09
91 345 0.68
92 112 0.22
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.41
Consensus pattern (92 bp):
TGCTGGAAATTGAGATGTTTAAGTGCTGCAAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTT
TAAGTGCTGCAAATTGAAGTGTTTAAA
Found at i:41428921 original size:273 final size:274
Alignment explanation
Indices: 41428403--41429001 Score: 1042
Period size: 273 Copynumber: 2.2 Consensus size: 274
41428393 TTATCGCTGT
* * * *
41428403 AATTGAGGTGTATAAATGTTGTTAATTGATA-TGTTTAAGTGCTGCAAATTGAAGTATTTAGTTG
1 AATTGAAGTGTTTAAATGCTGTAAATTGA-AGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTG
41428467 CTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAA
65 CTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAA
* *
41428532 GTGCTGCAAATTTAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTTT
130 GTGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTAT
*
41428597 TTAGTTGCTAGAAATTGAGATGTTTTATTGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATA
195 TTAGTTGCTAGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATA
41428662 TG-TTAAGTGCTGCA
260 TGTTTAAGTGCTGCA
*
41428676 AATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGC
1 AATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGC
41428741 TGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAAG
66 TGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAAG
41428806 TGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATT
131 TGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATT
*
41428871 TAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATAT
196 TAGTTGCTAGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATAT
41428936 GTTTAAGTGCTGCA
261 GTTTAAGTGCTGCA
* ** *
41428950 AATTGAAGTGTTTAAGTGCTACAAATTGAAGTGTTT-AGTTGTTGCAAATTGA
1 AATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAG-TGCTGCAAATTGA
41429002 GATGTTTTAT
Statistics
Matches: 309, Mismatches: 14, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
272 1 0.00
273 252 0.82
274 56 0.18
ACGTcount: A:0.30, C:0.05, G:0.23, T:0.41
Consensus pattern (274 bp):
AATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGC
TGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAAG
TGCTGCAAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATT
TAGTTGCTAGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATAT
GTTTAAGTGCTGCA
Found at i:41429024 original size:137 final size:137
Alignment explanation
Indices: 41428410--41429001 Score: 1037
Period size: 137 Copynumber: 4.3 Consensus size: 137
41428400 TGTAATTGAG
* * *
41428410 GTGTATAAATGTTGTTAATTGATA-TGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAA
1 GTGTTTAAATGCTGTAAATTGA-AGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAA
41428474 TTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGC
65 TTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGC
41428539 AAATTTAA
130 AAATTTAA
* * *
41428547 GTGTTTAAATGTTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTTTTTAGTTGCTAGAAAT
1 GTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAAT
*
41428612 TGAGATGTTTTATTGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATG-TTAAGTGCTGCA
66 TGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGCA
41428676 AATTTAA
131 AATTTAA
41428683 GTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAAT
1 GTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAAT
41428748 TGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGCA
66 TGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGCA
41428813 AATTTAA
131 AATTTAA
41428820 GTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAAT
1 GTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAAT
41428885 TGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGCA
66 TGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGCA
*
41428950 AATTGAA
131 AATTTAA
* ** *
41428957 GTGTTTAAGTGCTACAAATTGAAGTGTTT-AGTTGTTGCAAATTGA
1 GTGTTTAAATGCTGTAAATTGAAGTGTTTAAG-TGCTGCAAATTGA
41429002 GATGTTTTAT
Statistics
Matches: 438, Mismatches: 14, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
136 135 0.31
137 303 0.69
ACGTcount: A:0.30, C:0.05, G:0.23, T:0.41
Consensus pattern (137 bp):
GTGTTTAAATGCTGTAAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAAT
TGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGCA
AATTTAA
Found at i:41429990 original size:43 final size:43
Alignment explanation
Indices: 41429923--41430043 Score: 181
Period size: 43 Copynumber: 2.8 Consensus size: 43
41429913 TTTTCGTGAC
* * * *
41429923 CTTTAGTGGCGTTT-TTGGAGAAAGCGTCGCTAAAGGTCTTGGT
1 CTTTAGCGGCGTTTGTGGGA-AAAGCGCCGCTAAAGGTCCTGGT
41429966 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
*
41430009 CTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAG
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
41430044 TTAGCGATAC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
43 68 0.94
44 4 0.06
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCCTGGT
Found at i:41433110 original size:39 final size:39
Alignment explanation
Indices: 41433056--41433133 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
41433046 AATTTTAATT
41433056 CTTTAAATACTTAGTTTTAATTTTTAGACTTCATGAATA
1 CTTTAAATACTTAGTTTTAATTTTTAGACTTCATGAATA
*
41433095 CTTTAAATACTTAGTTTTAATTTTTAGACTTTATGAATA
1 CTTTAAATACTTAGTTTTAATTTTTAGACTTCATGAATA
41433134 AATTCCTATG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.33, C:0.09, G:0.08, T:0.50
Consensus pattern (39 bp):
CTTTAAATACTTAGTTTTAATTTTTAGACTTCATGAATA
Found at i:41434866 original size:216 final size:216
Alignment explanation
Indices: 41434488--41434918 Score: 790
Period size: 216 Copynumber: 2.0 Consensus size: 216
41434478 CCACATCAAA
41434488 TGATCATGTTTTCCATGTTAGAACAGTTTTAGACATTCTAAGAGCTGAAAAATTGTTTGCCAACC
1 TGATCATGTTTTCCATGTTAGAACAGTTTTAGACATTCTAAGAGCTGAAAAATTGTTTGCCAACC
41434553 ATGATAAATGCACATTTGGTTGTGATAAGCTAATATTTTTAGGTTTCATAGTTAGTGCTCAAGGT
66 ATGATAAATGCACATTTGGTTGTGATAAGCTAATATTTTTAGGTTTCATAGTTAGTGCTCAAGGT
41434618 ATTCATGTCGATGAGGACAAAGTTAAGGCAATCAAGGAGTGGCCAACTCCTAAATCGATAACTGA
131 ATTCATGTCGATGAGGACAAAGTTAAGGCAATCAAGGAGTGGCCAACTCCTAAATCGATAACTGA
* * *
41434683 GGTGATATCTTTCCATGGTTG
196 GGTAAGATCGTTCCATGGTTG
*
41434704 TGATCATGTTTTCCATGTTAGAACGGTTTTAGACATTCTAAGAGCTGAAAAATTGTTTGCCAACC
1 TGATCATGTTTTCCATGTTAGAACAGTTTTAGACATTCTAAGAGCTGAAAAATTGTTTGCCAACC
* * *
41434769 TTGATAAATGCACATTTTGTTGTGATAAGCTATTATTTTTAGGTTTCATAGTTAGTGCTCAAGGT
66 ATGATAAATGCACATTTGGTTGTGATAAGCTAATATTTTTAGGTTTCATAGTTAGTGCTCAAGGT
*
41434834 ATTCATGTCGATGAGGACAAAGTTAGGGCAATCAAGGAGTGGCCAACTCCTAAATCGATAACTGA
131 ATTCATGTCGATGAGGACAAAGTTAAGGCAATCAAGGAGTGGCCAACTCCTAAATCGATAACTGA
41434899 GGTAAGATCGTTCCATGGTT
196 GGTAAGATCGTTCCATGGTT
41434919 TAGCTAGTTT
Statistics
Matches: 207, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
216 207 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.34
Consensus pattern (216 bp):
TGATCATGTTTTCCATGTTAGAACAGTTTTAGACATTCTAAGAGCTGAAAAATTGTTTGCCAACC
ATGATAAATGCACATTTGGTTGTGATAAGCTAATATTTTTAGGTTTCATAGTTAGTGCTCAAGGT
ATTCATGTCGATGAGGACAAAGTTAAGGCAATCAAGGAGTGGCCAACTCCTAAATCGATAACTGA
GGTAAGATCGTTCCATGGTTG
Found at i:41435305 original size:296 final size:296
Alignment explanation
Indices: 41434764--41435350 Score: 1075
Period size: 296 Copynumber: 2.0 Consensus size: 296
41434754 AATTGTTTGC
41434764 CAACCTTGATAAATGCACATTTTGTTGTGATAAGCTATTATTTTTAGGTTTCATAGTTAGTGCTC
1 CAACCTTGATAAATGCACATTTTGTTGTGATAAGCTATTATTTTTAGGTTTCATAGTTAGTGCTC
41434829 AAGGTATTCATGTCGATGAGGACAAAGTTAGGGCAATCAAGGAGTGGCCAACTCCTAAATCGATA
66 AAGGTATTCATGTCGATGAGGACAAAGTTAGGGCAATCAAGGAGTGGCCAACTCCTAAATCGATA
*
41434894 ACTGAGGTAAGATCGTTCCATGGTTTAGCTAGTTTTTGTAGATGATTTGTGAAAGATTTCTCCAC
131 ACTGAGGTAAGATCGTTCCATGGTTTAGCTAGTTTTTATAGATGATTTGTGAAAGATTTCTCCAC
* * * * *
41434959 TATTGCTGCCCCATTAATAGAAGTTATTAAAAATTCCGTGGGTTTCAAATGGTGTGAAACTCAAG
196 TATTGCTGCCCCATTAACAGAAGTTATTAAAAAATCCATGGGTCTCAAATGGGGTGAAACTCAAG
41435024 AAAAGGCTTTTCAAACCCTAAAAGCTAAGTTATGTT
261 AAAAGGCTTTTCAAACCCTAAAAGCTAAGTTATGTT
41435060 CAACCTTGATAAATGCACATTTTGTTGTGATAAGCTATTATTTTTAGGTTTCATAGTTAGTGCTC
1 CAACCTTGATAAATGCACATTTTGTTGTGATAAGCTATTATTTTTAGGTTTCATAGTTAGTGCTC
41435125 AAGGTATTCATGTCGATGAGGACAAAGTTAGGGCAATCAAGGAGTGGCCAACTCCTAAATCGATA
66 AAGGTATTCATGTCGATGAGGACAAAGTTAGGGCAATCAAGGAGTGGCCAACTCCTAAATCGATA
* * * * *
41435190 ACTGAGGTGATATCTTTCCATGGTTTAGCTAGTTTTTATAGATGGTTTTTGAAAGATTTCTCCAC
131 ACTGAGGTAAGATCGTTCCATGGTTTAGCTAGTTTTTATAGATGATTTGTGAAAGATTTCTCCAC
41435255 TATTGCTGCCCCATTAACAGAAGTTATTAAAAAATCCATGGGTCTCAAATGGGGTGAAACTCAAG
196 TATTGCTGCCCCATTAACAGAAGTTATTAAAAAATCCATGGGTCTCAAATGGGGTGAAACTCAAG
41435320 AAAAGGCTTTTCAAACCCTAAAAGCTAAGTT
261 AAAAGGCTTTTCAAACCCTAAAAGCTAAGTT
41435351 GTACCCTGCT
Statistics
Matches: 280, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
296 280 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (296 bp):
CAACCTTGATAAATGCACATTTTGTTGTGATAAGCTATTATTTTTAGGTTTCATAGTTAGTGCTC
AAGGTATTCATGTCGATGAGGACAAAGTTAGGGCAATCAAGGAGTGGCCAACTCCTAAATCGATA
ACTGAGGTAAGATCGTTCCATGGTTTAGCTAGTTTTTATAGATGATTTGTGAAAGATTTCTCCAC
TATTGCTGCCCCATTAACAGAAGTTATTAAAAAATCCATGGGTCTCAAATGGGGTGAAACTCAAG
AAAAGGCTTTTCAAACCCTAAAAGCTAAGTTATGTT
Found at i:41437118 original size:17 final size:17
Alignment explanation
Indices: 41437088--41437121 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
41437078 TACGGTATCG
*
41437088 TAAAAAAAGAAAAAAAC
1 TAAAAAAACAAAAAAAC
41437105 TAAAAAAACTAAAAAAA
1 TAAAAAAAC-AAAAAAA
41437122 AATTGTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.82, C:0.06, G:0.03, T:0.09
Consensus pattern (17 bp):
TAAAAAAACAAAAAAAC
Found at i:41437122 original size:10 final size:9
Alignment explanation
Indices: 41437088--41437121 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
41437078 TACGGTATCG
41437088 TAAAAAAA-
1 TAAAAAAAC
*
41437096 GAAAAAAAC
1 TAAAAAAAC
41437105 TAAAAAAAC
1 TAAAAAAAC
41437114 TAAAAAAA
1 TAAAAAAA
41437122 AATTGTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.82, C:0.06, G:0.03, T:0.09
Consensus pattern (9 bp):
TAAAAAAAC
Found at i:41447685 original size:20 final size:20
Alignment explanation
Indices: 41447660--41447703 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
41447650 GCTGATGGAA
*
41447660 AGCTAAATTGAGCTCGAATG
1 AGCTAAATTGAGCTCAAATG
41447680 AGCTAAATTGAGCTCAAATG
1 AGCTAAATTGAGCTCAAATG
41447700 AGCT
1 AGCT
41447704 GGTTGGAGCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (20 bp):
AGCTAAATTGAGCTCAAATG
Found at i:41450747 original size:58 final size:58
Alignment explanation
Indices: 41450657--41450767 Score: 195
Period size: 58 Copynumber: 1.9 Consensus size: 58
41450647 GGTGGACTAC
* *
41450657 AAGGCATTGAAAGTCGGCAAGGTCCCCTTCTTTTGGTGGTTCAACCAACTCTTCTCCT
1 AAGGCATTGAAAATCGGCAAAGTCCCCTTCTTTTGGTGGTTCAACCAACTCTTCTCCT
*
41450715 AAGGCATTGAAAATCGGCAAAGTCCTCTTCTTTTGGTGGTTCAACCAACTCTT
1 AAGGCATTGAAAATCGGCAAAGTCCCCTTCTTTTGGTGGTTCAACCAACTCTT
41450768 TAAATTTATC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 50 1.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (58 bp):
AAGGCATTGAAAATCGGCAAAGTCCCCTTCTTTTGGTGGTTCAACCAACTCTTCTCCT
Found at i:41451340 original size:199 final size:199
Alignment explanation
Indices: 41450995--41451391 Score: 659
Period size: 199 Copynumber: 2.0 Consensus size: 199
41450985 AATCCTAATT
* *
41450995 TGCAATAGGAGTCCAAAAAGTGACGAGACACCAATTGATTTGTGTCGCACCGAGGAAGAATTGTG
1 TGCAATAGGAGTCCAAAAAGTGACAAGACACCAATTGATTTGTGTCGCACCGAGAAAGAATTGTG
* *
41451060 CACACTTTTAAATCCTACTAACACAAGACACAAGAAGGTGTTAGATAGTGTAAAGGAACAACAAA
66 CACACTTTTAAATCCTACTAACACAAGAAACAAAAAGGTGTTAGATAGTGTAAAGGAACAACAAA
*
41451125 AGAAAAACAAATGAAAACCTACAGCTAAGAAACAATAAAAATTACTGATACCCAAAAACCCGAAA
131 AGAAAAACAAATGAAAACCTACAGCTAAGAAACAATAAAAATTACGGATACCCAAAAACCCGAAA
41451190 AAAA
196 AAAA
* * *
41451194 TGCACTAGGAGTCCAAAAATTGACAAGACACCAATTGATTTGTGTTGCACCGAGAAAGAATTGTG
1 TGCAATAGGAGTCCAAAAAGTGACAAGACACCAATTGATTTGTGTCGCACCGAGAAAGAATTGTG
* *
41451259 CACACTTTTAAATCCTACTAACACAAGAAACAAAAAGGTGTTAGATAGTGTAAAGGAAGAATAAA
66 CACACTTTTAAATCCTACTAACACAAGAAACAAAAAGGTGTTAGATAGTGTAAAGGAACAACAAA
* * * **
41451324 AGCAAAACAAATGAAAACCTACAGCTAAGAATCAATAAAAATTGCGGATACCTTAAAACCCGAAA
131 AGAAAAACAAATGAAAACCTACAGCTAAGAAACAATAAAAATTACGGATACCCAAAAACCCGAAA
41451389 AAA
196 AAA
41451392 CTGTGGAGTA
Statistics
Matches: 183, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
199 183 1.00
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (199 bp):
TGCAATAGGAGTCCAAAAAGTGACAAGACACCAATTGATTTGTGTCGCACCGAGAAAGAATTGTG
CACACTTTTAAATCCTACTAACACAAGAAACAAAAAGGTGTTAGATAGTGTAAAGGAACAACAAA
AGAAAAACAAATGAAAACCTACAGCTAAGAAACAATAAAAATTACGGATACCCAAAAACCCGAAA
AAAA
Done.