Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 138 of 153
Found at i:43306168 original size:16 final size:16
Alignment explanation
Indices: 43306149--43306182 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
43306139 CTTTGATTTT
43306149 TTAATATATTATAATA
1 TTAATATATTATAATA
43306165 TTAATATATTATAATA
1 TTAATATATTATAATA
43306181 TT
1 TT
43306183 CAGAGGTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAATATATTATAATA
Found at i:43315588 original size:50 final size:50
Alignment explanation
Indices: 43315510--43316352 Score: 1344
Period size: 50 Copynumber: 16.8 Consensus size: 50
43315500 ATTTGGGTAA
*
43315510 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43315560 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43315610 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43315660 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43315710 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43315760 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43315810 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43315860 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43315910 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43315960 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43316010 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43316060 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43316110 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43316160 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
* *
43316210 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
** * * *
43316260 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
** *
43316310 AGTACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
43316353 GGTCATTATC
Statistics
Matches: 724, Mismatches: 68, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
50 690 0.95
51 34 0.05
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGATG
Found at i:43315683 original size:100 final size:100
Alignment explanation
Indices: 43315510--43316352 Score: 1560
Period size: 100 Copynumber: 8.4 Consensus size: 100
43315500 ATTTGGGTAA
* * *
43315510 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCAAGATGAGAGGTCCCATGTAA
1 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
43315575 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
66 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43315610 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
1 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
43315675 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
66 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43315710 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
1 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
43315775 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
66 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43315810 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
1 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
43315875 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
66 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43315910 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
1 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
43315975 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
66 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43316010 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
1 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
43316075 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
66 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43316110 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
1 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
43316175 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
66 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
**
43316210 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCCCGTAA
1 AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
* * *
43316275 GACCATGTCTGGGACATGGCATGGGCACCGACATG
66 GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * *
43316310 AGTACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCA
43316353 GGTCATTATC
Statistics
Matches: 729, Mismatches: 13, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
100 694 0.95
101 35 0.05
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (100 bp):
AGAGGTCCTATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCCCATGTAA
GACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:43317113 original size:78 final size:78
Alignment explanation
Indices: 43317019--43317173 Score: 292
Period size: 78 Copynumber: 2.0 Consensus size: 78
43317009 AGAGTCTAAG
43317019 TGATAAACTATGCATGGAAATCATAAAAGGGTAAAATTTTGCAAAGAAACAGAATTCAGGCAGCA
1 TGATAAACTATGCATGGAAATCATAAAAGGGTAAAATTTTGCAAAGAAACAGAATTCAGGCAGCA
*
43317084 ACAGTTACGTGAT
66 ACAATTACGTGAT
43317097 TGATAAACTATGCATGGAAATCATAAAAGGGTAAAATTTTGCAAAGAAACAGAATTCAGGCAGCA
1 TGATAAACTATGCATGGAAATCATAAAAGGGTAAAATTTTGCAAAGAAACAGAATTCAGGCAGCA
*
43317162 ACAATTATGTGA
66 ACAATTACGTGA
43317174 ATTTGAAAAA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 75 1.00
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.23
Consensus pattern (78 bp):
TGATAAACTATGCATGGAAATCATAAAAGGGTAAAATTTTGCAAAGAAACAGAATTCAGGCAGCA
ACAATTACGTGAT
Found at i:43323191 original size:75 final size:75
Alignment explanation
Indices: 43323045--43323191 Score: 258
Period size: 75 Copynumber: 2.0 Consensus size: 75
43323035 TCATTTGGAG
* *
43323045 GAAATCAGCAAGGGGGTAAGCCATATTTAGGGTTTTCAAGCTTCCAAGCTCCATAATCAAGAACA
1 GAAATCAGCAAGGGGGTAAGCCATATTTAGGGTTTTCAAGCTTCCAAGCTCCATAATAAAAAACA
*
43323110 ATGAAATGAC
66 ACGAAATGAC
*
43323120 GAAATCAGCAAGGGGGTAAGCCATATTTAGGGTTTTCAAGCTTCCAAGCTCCATAATAAAAAAGA
1 GAAATCAGCAAGGGGGTAAGCCATATTTAGGGTTTTCAAGCTTCCAAGCTCCATAATAAAAAACA
43323185 ACGAAAT
66 ACGAAAT
43323192 TCGAGGTTAG
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.22
Consensus pattern (75 bp):
GAAATCAGCAAGGGGGTAAGCCATATTTAGGGTTTTCAAGCTTCCAAGCTCCATAATAAAAAACA
ACGAAATGAC
Found at i:43323531 original size:50 final size:50
Alignment explanation
Indices: 43323453--43324445 Score: 1851
Period size: 50 Copynumber: 19.8 Consensus size: 50
43323443 ATTTGGGTAA
* * *
43323453 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCATTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43323503 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43323553 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43323603 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43323653 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43323703 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43323753 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43323803 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43323853 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43323903 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43323953 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43324003 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43324053 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43324103 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43324153 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43324203 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
43324253 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
43324303 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** ** * *
43324353 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGTATGGGCACCGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** *
43324403 AGTACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
43324446 TGTCATTATC
Statistics
Matches: 924, Mismatches: 18, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
50 891 0.96
51 33 0.04
ACGTcount: A:0.24, C:0.22, G:0.33, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:43328462 original size:38 final size:38
Alignment explanation
Indices: 43328403--43328488 Score: 156
Period size: 38 Copynumber: 2.3 Consensus size: 38
43328393 ACAAGAAATC
43328403 TTAACAAG-TTAGATAATGAAATCGGCACAAAACATGAA
1 TTAA-AAGATTAGATAATGAAATCGGCACAAAACATGAA
43328441 TTAAAAGATTAGATAATGAAATCGGCACAAAACATGAA
1 TTAAAAGATTAGATAATGAAATCGGCACAAAACATGAA
43328479 TTAAAAGATT
1 TTAAAAGATT
43328489 GAAACGAACA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
37 3 0.06
38 44 0.94
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.23
Consensus pattern (38 bp):
TTAAAAGATTAGATAATGAAATCGGCACAAAACATGAA
Found at i:43329831 original size:20 final size:21
Alignment explanation
Indices: 43329802--43329840 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
43329792 GGACTAAATT
*
43329802 GGAAACATAT-AAAATTTTTA
1 GGAAAAATATGAAAATTTTTA
43329822 GGAAAAATATGAAAATTTT
1 GGAAAAATATGAAAATTTT
43329841 CAAACTTCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.51, C:0.03, G:0.13, T:0.33
Consensus pattern (21 bp):
GGAAAAATATGAAAATTTTTA
Found at i:43330830 original size:15 final size:16
Alignment explanation
Indices: 43330801--43330830 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
43330791 CAAACATGCT
43330801 TTAACACATTATCAAA
1 TTAACACATTATCAAA
43330817 TTAACACA-TATCAA
1 TTAACACATTATCAA
43330831 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:43331303 original size:20 final size:19
Alignment explanation
Indices: 43331276--43331317 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
43331266 CCTTTCAAAT
43331276 TTTCTTACTTT-CATTTGTA
1 TTTCTTACTTTCCATTT-TA
43331295 TTTCATTACTTTCCATTTTA
1 TTTC-TTACTTTCCATTTTA
43331315 TTT
1 TTT
43331318 ACTTTCTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 12 0.57
21 5 0.24
ACGTcount: A:0.17, C:0.17, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTCTTACTTTCCATTTTA
Found at i:43332134 original size:13 final size:14
Alignment explanation
Indices: 43332098--43332143 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 14
43332088 CATGCAAATT
43332098 AAAGTAAAAAG-AAG
1 AAAG-AAAAAGAAAG
43332112 AAAGAAAAAGAAAG
1 AAAGAAAAAGAAAG
43332126 AAAGAAAAGAGACAAG
1 AAAGAAAA-AGA-AAG
43332142 AA
1 AA
43332144 GTTACAGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
13 6 0.21
14 15 0.52
15 3 0.10
16 5 0.17
ACGTcount: A:0.74, C:0.02, G:0.22, T:0.02
Consensus pattern (14 bp):
AAAGAAAAAGAAAG
Found at i:43339840 original size:15 final size:16
Alignment explanation
Indices: 43339813--43339852 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
43339803 ATTAAAGTAA
43339813 AAAGAAGAAAGAAAAG
1 AAAGAAGAAAGAAAAG
43339829 AAAGAA-AAAGAAAAG
1 AAAGAAGAAAGAAAAG
*
43339844 AGAGAAGAA
1 AAAGAAGAA
43339853 GTTATGACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (16 bp):
AAAGAAGAAAGAAAAG
Found at i:43341467 original size:25 final size:26
Alignment explanation
Indices: 43341439--43341487 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
43341429 TAAGTGAAGT
*
43341439 TATAAGTGTAATG-TTG-GTTTGAATA
1 TATAAATGT-ATGTTTGTGTTTGAATA
43341464 TATAAATGTATGTTTGTGTTTGAA
1 TATAAATGTATGTTTGTGTTTGAA
43341488 GCCATAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 11 0.52
26 7 0.33
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (26 bp):
TATAAATGTATGTTTGTGTTTGAATA
Found at i:43346285 original size:12 final size:13
Alignment explanation
Indices: 43346269--43346358 Score: 59
Period size: 12 Copynumber: 7.2 Consensus size: 13
43346259 TTATTAATTC
43346269 ATATATTAATAAT
1 ATATATTAATAAT
*
43346282 -TATATTAAGAAT
1 ATATATTAATAAT
* *
43346294 GT-TATTAA-ATT
1 ATATATTAATAAT
*
43346305 ATATATTATTAA-
1 ATATATTAATAAT
43346317 ATTATATTTAATAAT
1 A-TATA-TTAATAAT
43346332 AATTATATTAA-AAT
1 -A-TATATTAATAAT
43346346 ATA-ATTAA-AAT
1 ATATATTAATAAT
43346357 AT
1 AT
43346359 TTCTTATTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
11 13 0.20
12 25 0.39
13 7 0.11
14 9 0.14
15 4 0.06
16 6 0.09
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (13 bp):
ATATATTAATAAT
Found at i:43346315 original size:15 final size:15
Alignment explanation
Indices: 43346295--43346323 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
43346285 ATTAAGAATG
43346295 TTATTAAATTATATA
1 TTATTAAATTATATA
43346310 TTATTAAATTATAT
1 TTATTAAATTATAT
43346324 TTAATAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATTAAATTATATA
Found at i:43346366 original size:26 final size:26
Alignment explanation
Indices: 43346275--43346366 Score: 62
Period size: 26 Copynumber: 3.5 Consensus size: 26
43346265 ATTCATATAT
* * *
43346275 TAATAATTATATTAAGAATGTTATTAA
1 TAATAATTTTATTAA-AATATAATTAA
* * * *
43346302 -ATTATATATTATTAAATTATATTTAA
1 TAATA-ATTTTATTAAAATATAATTAA
*
43346328 TAATAATTATATTAAAATATAATTAA
1 TAATAATTTTATTAAAATATAATTAA
*
43346354 -AATATTTCTTATT
1 TAATAATT-TTATT
43346367 TTTATTAAAT
Statistics
Matches: 48, Mismatches: 14, Indels: 7
0.70 0.20 0.10
Matches are distributed among these distances:
25 6 0.12
26 31 0.65
27 11 0.23
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (26 bp):
TAATAATTTTATTAAAATATAATTAA
Found at i:43347079 original size:21 final size:22
Alignment explanation
Indices: 43347055--43347108 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
43347045 AAATGGAAGC
* *
43347055 AAAACCATAGGAAAATAGTGGA
1 AAAACAATAGGAAAATACTGGA
**
43347077 AAAACAATAACAAAATACTGG-
1 AAAACAATAGGAAAATACTGGA
43347098 AAAACAATAGG
1 AAAACAATAGG
43347109 TATTTATTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.59, C:0.11, G:0.17, T:0.13
Consensus pattern (22 bp):
AAAACAATAGGAAAATACTGGA
Found at i:43347080 original size:22 final size:22
Alignment explanation
Indices: 43347066--43347106 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
43347056 AAACCATAGG
*
43347066 AAAATAGTGGAAAAACAATAAC
1 AAAATACTGGAAAAACAATAAC
43347088 AAAATACTGG-AAAACAATA
1 AAAATACTGGAAAAACAATA
43347107 GGTATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.63, C:0.10, G:0.12, T:0.15
Consensus pattern (22 bp):
AAAATACTGGAAAAACAATAAC
Found at i:43349412 original size:26 final size:26
Alignment explanation
Indices: 43349383--43349435 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
43349373 GGTAGAGAGA
43349383 AGGAATCGAACGTTATTAGACATGGT
1 AGGAATCGAACGTTATTAGACATGGT
*
43349409 AGGAATTGAACGTTATTAGACATGGT
1 AGGAATCGAACGTTATTAGACATGGT
43349435 A
1 A
43349436 TGTTTGATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.28
Consensus pattern (26 bp):
AGGAATCGAACGTTATTAGACATGGT
Found at i:43354470 original size:24 final size:24
Alignment explanation
Indices: 43354443--43354504 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
43354433 TTTCCATTAA
**
43354443 TGATAGATTGATATTTTTAAATGT
1 TGATAGATTGATATTAATAAATGT
* *
43354467 TGAT-GATGGAAAATTAATAAATGT
1 TGATAGATTG-ATATTAATAAATGT
*
43354491 TGATAGATTAATAT
1 TGATAGATTGATAT
43354505 GTGTTGCCGA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
23 4 0.14
24 22 0.76
25 3 0.10
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (24 bp):
TGATAGATTGATATTAATAAATGT
Found at i:43359882 original size:27 final size:27
Alignment explanation
Indices: 43359851--43360028 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
43359841 TAAATTGTAC
43359851 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
43359878 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
43359904 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
43359932 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
43359960 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
43359987 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
43360014 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
43360029 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:43359965 original size:82 final size:81
Alignment explanation
Indices: 43359852--43360007 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
43359842 AAATTGTACA
* *
43359852 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
43359916 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
43359933 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
43359998 TGCGAGTTGA
65 TGCGAATTGA
43360008 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:43360019 original size:82 final size:81
Alignment explanation
Indices: 43359848--43360028 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
43359838 GATTAAATTG
* *
43359848 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
43359913 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
43359929 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
43359993 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
43360011 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
43360029 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:43365020 original size:27 final size:27
Alignment explanation
Indices: 43364990--43365046 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 27
43364980 TTTGTGTATT
*
43364990 TGTGAAA-TAGGGACTAAATTGAAGAAA
1 TGTGAAATTAGGGACTAAAGTGAA-AAA
43365017 TGTGAAACTTTAGGGACTAAAGTGAAAAA
1 TGTGAAA--TTAGGGACTAAAGTGAAAAA
43365046 T
1 T
43365047 TGTCCAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 7 0.27
29 4 0.15
30 15 0.58
ACGTcount: A:0.46, C:0.05, G:0.25, T:0.25
Consensus pattern (27 bp):
TGTGAAATTAGGGACTAAAGTGAAAAA
Found at i:43372035 original size:16 final size:16
Alignment explanation
Indices: 43372014--43372048 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
43372004 TTGTAATTTT
43372014 AATGTTAAA-TGACTAA
1 AATGTTAAAGTGA-TAA
43372030 AATGTTAAAGTGATAA
1 AATGTTAAAGTGATAA
43372046 AAT
1 AAT
43372049 TACAAGGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.83
17 3 0.17
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.31
Consensus pattern (16 bp):
AATGTTAAAGTGATAA
Found at i:43372863 original size:40 final size:41
Alignment explanation
Indices: 43372760--43372864 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
43372750 GGCTTTGAGT
* * *
43372760 CTAGCAGGCTTCATGCCAGTGT-ATCTATCGGGCTTAATGC
1 CTAGCAGGCTTCATGCCGGTGTAATCTATAGAGCTTAATGC
*
43372800 CTAGCAGGCTT-AGTGCCGGTGTAAT-TATAGAGCTTAGTGC
1 CTAGCAGGCTTCA-TGCCGGTGTAATCTATAGAGCTTAATGC
* *
43372840 CTAGCAAGCTTCAAGCCGGTGTAAT
1 CTAGCAGGCTTCATGCCGGTGTAAT
43372865 AATTCTTACT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
39 1 0.02
40 52 0.93
41 3 0.05
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (41 bp):
CTAGCAGGCTTCATGCCGGTGTAATCTATAGAGCTTAATGC
Found at i:43382316 original size:20 final size:20
Alignment explanation
Indices: 43382263--43382322 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
43382253 TTTGAGTTAC
43382263 GAGATATGAGAATGTTTGATT
1 GAGATATGAGAATGTTTGA-T
*
43382284 GA-ATGAT-ATAATGTGTTG-T
1 GAGAT-ATGAGAATGT-TTGAT
43382303 GAGATATGAGAATGTTTGAT
1 GAGATATGAGAATGTTTGAT
43382323 TAAGCTTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
19 8 0.25
20 17 0.53
21 7 0.22
ACGTcount: A:0.33, C:0.00, G:0.28, T:0.38
Consensus pattern (20 bp):
GAGATATGAGAATGTTTGAT
Found at i:43382759 original size:23 final size:23
Alignment explanation
Indices: 43382703--43382764 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
43382693 GAATGGCGAT
* *
43382703 TTATC-GCATTTTTACTGGTAGC
1 TTATCTGCATTTTTACTGGCAAC
*
43382725 TTATTTGCATTTTTACTGGCAAC
1 TTATCTGCATTTTTACTGGCAAC
* *
43382748 TTGTCTGTATTTTTACT
1 TTATCTGCATTTTTACT
43382765 AGTAGAATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 4 0.12
23 29 0.88
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.52
Consensus pattern (23 bp):
TTATCTGCATTTTTACTGGCAAC
Found at i:43389001 original size:27 final size:27
Alignment explanation
Indices: 43388960--43389159 Score: 156
Period size: 27 Copynumber: 7.4 Consensus size: 27
43388950 AAAAATGTTA
* *
43388960 TAAAATTATCAAAATACCCTCGATGGG
1 TAAAATTACCGAAATACCCTCGATGGG
**
43388987 TAAAATTACCGAAATACCCTCGAAAGG
1 TAAAATTACCGAAATACCCTCGATGGG
** *
43389014 TAAAATTACAAAAATACCCTCGAAGGG
1 TAAAATTACCGAAATACCCTCGATGGG
** * * *
43389041 TAAAATTACTAAAATACCCTTGAAGCG
1 TAAAATTACCGAAATACCCTCGATGGG
*
43389068 TAAAATGT-TCGAAATACCCTCGATGGG
1 TAAAAT-TACCGAAATACCCTCGATGGG
* * *
43389095 TAAAATGACCGTAATGCTCCT-G-TAGGG
1 TAAAATTACCGAAATAC-CCTCGAT-GGG
* * *
43389122 TAAAATGACCGTAATACCCT-TATAGGG
1 TAAAATTACCGAAATACCCTCGAT-GGG
*
43389149 TAAAATGACCG
1 TAAAATTACCG
43389160 TAATGCCTTA
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.03
27 138 0.95
28 4 0.03
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.23
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGATGGG
Found at i:43389028 original size:54 final size:53
Alignment explanation
Indices: 43388960--43389105 Score: 186
Period size: 54 Copynumber: 2.7 Consensus size: 53
43388950 AAAAATGTTA
43388960 TAAAATTATCAAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGAAAG-G
1 TAAAATTA-CAAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCG-AAGCG
* ** *
43389014 TAAAATTACAAAAATACCCTCGAAGGGTAAAATTACTAAAATACCCTTGAAGCG
1 TAAAATTAC-AAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGAAGCG
* * *
43389068 TAAAATGTTCGAAATACCCTCGATGGGTAAAATGACCG
1 TAAAAT-TACAAAATACCCTCGATGGGTAAAATTACCG
43389106 TAATGCTCCT
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
53 4 0.05
54 73 0.92
55 2 0.03
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (53 bp):
TAAAATTACAAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGAAGCG
Found at i:43389125 original size:54 final size:53
Alignment explanation
Indices: 43388971--43389159 Score: 177
Period size: 54 Copynumber: 3.5 Consensus size: 53
43388961 AAAATTATCA
* * *
43388971 AAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGAAAGGTAAAAT-TACAA
1 AAATACCCTCGATGGGTAAAATGACCGAAATACCCT-GAAGGGTAAAATGTAC-G
* * ** * *
43389025 AAATACCCTCGAAGGGTAAAATTACTAAAATACCCTTGAAGCGTAAAATGTTCG
1 AAATACCCTCGATGGGTAAAATGACCGAAATACCC-TGAAGGGTAAAATGTACG
* * *
43389079 AAATACCCTCGATGGGTAAAATGACCGTAATGCTCCTGTAGGGTAAAATG-ACCG
1 AAATACCCTCGATGGGTAAAATGACCGAAATAC-CCTGAAGGGTAAAATGTA-CG
* *
43389133 TAATACCCT-TATAGGGTAAAATGACCG
1 AAATACCCTCGAT-GGGTAAAATGACCG
43389160 TAATGCCTTA
Statistics
Matches: 112, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
53 2 0.02
54 105 0.94
55 5 0.04
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.23
Consensus pattern (53 bp):
AAATACCCTCGATGGGTAAAATGACCGAAATACCCTGAAGGGTAAAATGTACG
Found at i:43389160 original size:27 final size:27
Alignment explanation
Indices: 43389053--43389176 Score: 121
Period size: 27 Copynumber: 4.6 Consensus size: 27
43389043 AAATTACTAA
* ** *
43389053 AATACCCTTGA-AGCGTAAAATGTTCGA
1 AATACCCTT-ATAGGGTAAAATGACCGT
*
43389080 AATACCCTCGAT-GGGTAAAATGACCGT
1 AATACCCT-TATAGGGTAAAATGACCGT
* *
43389107 AATGCTCC-TGTAGGGTAAAATGACCGT
1 AATAC-CCTTATAGGGTAAAATGACCGT
43389134 AATACCCTTATAGGGTAAAATGACCGT
1 AATACCCTTATAGGGTAAAATGACCGT
*
43389161 AAT-GCCTTATAGGGTA
1 AATACCCTTATAGGGTA
43389177 TCTGCCCTAT
Statistics
Matches: 81, Mismatches: 11, Indels: 11
0.79 0.11 0.11
Matches are distributed among these distances:
26 15 0.19
27 64 0.79
28 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATACCCTTATAGGGTAAAATGACCGT
Found at i:43389175 original size:26 final size:26
Alignment explanation
Indices: 43389092--43389176 Score: 125
Period size: 27 Copynumber: 3.2 Consensus size: 26
43389082 TACCCTCGAT
* *
43389092 GGGTAAAATGACCGTAATGCTCCTGTA
1 GGGTAAAATGACCGTAATGC-CTTATA
*
43389119 GGGTAAAATGACCGTAATACCCTTATA
1 GGGTAAAATGACCGTAAT-GCCTTATA
43389146 GGGTAAAATGACCGTAATGCCTTATA
1 GGGTAAAATGACCGTAATGCCTTATA
43389172 GGGTA
1 GGGTA
43389177 TCTGCCCTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 12 0.23
27 40 0.75
28 1 0.02
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (26 bp):
GGGTAAAATGACCGTAATGCCTTATA
Found at i:43389245 original size:27 final size:26
Alignment explanation
Indices: 43389179--43389252 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
43389169 ATAGGGTATC
* * *
43389179 TGCCCTATAGGATAAAATGATCGTAA
1 TGCCCTATAGGGTAAAATGACCATAA
*
43389205 TGCCCTGTAGGGTAAAATGACCATAA
1 TGCCCTATAGGGTAAAATGACCATAA
43389231 TGCCCCTATAGGGTAAAATGAC
1 TG-CCCTATAGGGTAAAATGAC
43389253 TATTTTGCCC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 24 0.57
27 18 0.43
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (26 bp):
TGCCCTATAGGGTAAAATGACCATAA
Found at i:43389306 original size:24 final size:24
Alignment explanation
Indices: 43389271--43389403 Score: 149
Period size: 24 Copynumber: 5.5 Consensus size: 24
43389261 CCCTCGAGGT
* *
43389271 TAAATGATTGATTTGACTGTGATG
1 TAAATGACTGATTTGTCTGTGATG
* *
43389295 TAAATGAATGATTTGTCTGAGATG
1 TAAATGACTGATTTGTCTGTGATG
* * *
43389319 TAAATGACTAATTTGTCTGTGGTT
1 TAAATGACTGATTTGTCTGTGATG
* *
43389343 TAAATGACTGATTTGTCTTTGATT
1 TAAATGACTGATTTGTCTGTGATG
* *
43389367 TAAATGACTGATTTGTTTGTGATT
1 TAAATGACTGATTTGTCTGTGATG
**
43389391 TGTATGACTGATT
1 TAAATGACTGATT
43389404 CCGTGCATGA
Statistics
Matches: 94, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 94 1.00
ACGTcount: A:0.27, C:0.06, G:0.22, T:0.45
Consensus pattern (24 bp):
TAAATGACTGATTTGTCTGTGATG
Found at i:43389536 original size:27 final size:26
Alignment explanation
Indices: 43389486--43389563 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 26
43389476 GGTGGCTCTG
*
43389486 CCACAATCACTGTTACTAGTAGCTTGA
1 CCACAAT-ACTGTTACTAGCAGCTTGA
* *
43389513 CCACATATACTGTTACTGGCAGCTTTA
1 CCACA-ATACTGTTACTAGCAGCTTGA
* * *
43389540 CTACGATACTGTTGCTAGCAGCTT
1 CCACAATACTGTTACTAGCAGCTT
43389564 TGCTCCGATG
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 17 0.40
27 24 0.56
28 2 0.05
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (26 bp):
CCACAATACTGTTACTAGCAGCTTGA
Found at i:43389686 original size:61 final size:63
Alignment explanation
Indices: 43389578--43389760 Score: 230
Period size: 61 Copynumber: 2.9 Consensus size: 63
43389568 CCGATGCTAT
* * *
43389578 TGATGGCTT-TGTGCCGATCATATTACCATTACTGATGG-TTGTGTGCCGATCATATTACCATTA
1 TGATGG-TTGTGTGCCAATCATATTA-TACTACTGATGGCTT-TGTGCCGATCATATTACCATTA
43389641 C
63 C
* * *
43389642 TGATGGTTGTGTGTCAATCATA-T-TACTACTGATGGCTTTGTGCCGATCATACTACTATTAC
1 TGATGGTTGTGTGCCAATCATATTATACTACTGATGGCTTTGTGCCGATCATATTACCATTAC
* *
43389703 TGATGGTTGTGTGCCGATCATATTACTACTACTGATGGCTTTGTGCCAATCATATTAC
1 TGATGGTTGTGTGCCAATCATATTA-TACTACTGATGGCTTTGTGCCGATCATATTAC
43389761 TGTACTTCTG
Statistics
Matches: 104, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
61 51 0.49
62 3 0.03
63 3 0.03
64 47 0.45
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.38
Consensus pattern (63 bp):
TGATGGTTGTGTGCCAATCATATTATACTACTGATGGCTTTGTGCCGATCATATTACCATTAC
Found at i:43389705 original size:93 final size:93
Alignment explanation
Indices: 43389578--43389761 Score: 307
Period size: 93 Copynumber: 2.0 Consensus size: 93
43389568 CCGATGCTAT
* *
43389578 TGATGGCTTTGTGCCGATCATATTACCATTACTGATGGTTGTGTGCCGATCATATTACCATTACT
1 TGATGGCTTTGTGCCGATCATACTACCATTACTGATGGTTGTGTGCCGATCATATTACCACTACT
*
43389643 GATGG-TTGTGTGTCAATCATATTACTAC
66 GATGGCTT-TGTGCCAATCATATTACTAC
* *
43389671 TGATGGCTTTGTGCCGATCATACTACTATTACTGATGGTTGTGTGCCGATCATATTACTACTACT
1 TGATGGCTTTGTGCCGATCATACTACCATTACTGATGGTTGTGTGCCGATCATATTACCACTACT
43389736 GATGGCTTTGTGCCAATCATATTACT
66 GATGGCTTTGTGCCAATCATATTACT
43389762 GTACTTCTGG
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
93 83 0.98
94 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (93 bp):
TGATGGCTTTGTGCCGATCATACTACCATTACTGATGGTTGTGTGCCGATCATATTACCACTACT
GATGGCTTTGTGCCAATCATATTACTAC
Found at i:43389761 original size:32 final size:32
Alignment explanation
Indices: 43389578--43389761 Score: 236
Period size: 32 Copynumber: 5.8 Consensus size: 32
43389568 CCGATGCTAT
*
43389578 TGATGGCTT-TGTGCCGATCATATTACCATTAC
1 TGATGG-TTGTGTGCCGATCATATTACTATTAC
*
43389610 TGATGGTTGTGTGCCGATCATATTACCATTAC
1 TGATGGTTGTGTGCCGATCATATTACTATTAC
* *
43389642 TGATGGTTGTGTGTCAATCATATTAC---TAC
1 TGATGGTTGTGTGCCGATCATATTACTATTAC
*
43389671 TGATGGCTT-TGTGCCGATCATACTACTATTAC
1 TGATGG-TTGTGTGCCGATCATATTACTATTAC
*
43389703 TGATGGTTGTGTGCCGATCATATTACTACTAC
1 TGATGGTTGTGTGCCGATCATATTACTATTAC
*
43389735 TGATGGCTT-TGTGCCAATCATATTACT
1 TGATGG-TTGTGTGCCGATCATATTACT
43389762 GTACTTCTGG
Statistics
Matches: 137, Mismatches: 8, Indels: 14
0.86 0.05 0.09
Matches are distributed among these distances:
29 23 0.17
30 2 0.01
31 4 0.03
32 106 0.77
33 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (32 bp):
TGATGGTTGTGTGCCGATCATATTACTATTAC
Found at i:43389796 original size:22 final size:21
Alignment explanation
Indices: 43389771--43389835 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
43389761 TGTACTTCTG
*
43389771 GCTTGTAGCCATTCTGTTTATA
1 GCTT-TAGCCATTCTGTTTACA
* * *
43389793 GCTTATAGCTATCCTGTTTACG
1 GCTT-TAGCCATTCTGTTTACA
*
43389815 GCTCTTAGCCATTCTGGTTAC
1 GCT-TTAGCCATTCTGTTTAC
43389836 TGGCAGCTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
22 33 0.97
23 1 0.03
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (21 bp):
GCTTTAGCCATTCTGTTTACA
Found at i:43391170 original size:35 final size:33
Alignment explanation
Indices: 43391093--43391160 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
43391083 CCCGTGTAAC
*
43391093 ATGGTTTCAACATCCAATATATATACATACCAA
1 ATGGTTCCAACATCCAATATATATACATACCAA
43391126 ATGGTTCCAACATCCAATATATATACATACCAA
1 ATGGTTCCAACATCCAATATATATACATACCAA
43391159 AT
1 AT
43391161 TTAGGTCCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.29
Consensus pattern (33 bp):
ATGGTTCCAACATCCAATATATATACATACCAA
Found at i:43392692 original size:29 final size:29
Alignment explanation
Indices: 43392632--43392830 Score: 172
Period size: 29 Copynumber: 6.8 Consensus size: 29
43392622 GATGGTTGAA
43392632 ACCATCCCTTTTCATTAATTGATAGTCGTC
1 ACCATCCCTTTTCA-TAATTGATAGTCGTC
* *
43392662 ACCATCCCTTTTCATAGTTGATGGTCGTC
1 ACCATCCCTTTTCATAATTGATAGTCGTC
* * * *
43392691 ACCATCCCCTTTCATAATAGATAGCCG-A
1 ACCATCCCTTTTCATAATTGATAGTCGTC
** *
43392719 AGTTATCCCTTTTCATAATCGATAGTCAG--
1 A-CCATCCCTTTTCATAATTGATAGTC-GTC
* * *
43392748 AGCTATCCCTTTTCATATTTGATGGTCGTC
1 A-CCATCCCTTTTCATAATTGATAGTCGTC
* * **
43392778 ACCATCCC-TTTCAATAGTTGATGGTTATC
1 ACCATCCCTTTTC-ATAATTGATAGTCGTC
*
43392807 ACCATCCCTTTTCATAATCGATAG
1 ACCATCCCTTTTCATAATTGATAG
43392831 CCAAAGCTAT
Statistics
Matches: 139, Mismatches: 24, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
28 6 0.04
29 113 0.81
30 20 0.14
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (29 bp):
ACCATCCCTTTTCATAATTGATAGTCGTC
Found at i:43392786 original size:116 final size:117
Alignment explanation
Indices: 43392635--43392859 Score: 355
Period size: 116 Copynumber: 1.9 Consensus size: 117
43392625 GGTTGAAACC
*
43392635 ATCCCTTTTCATTAATTGATAGTCGTCACCATCCCTTTTC-ATAGTTGATGGTCGTCACCATCCC
1 ATCCCTTTTCATTAATTGATAGTCGTCACCATCCC-TTTCAATAGTTGATGGTCATCACCATCCC
* *
43392699 CTTTCATAATAGATAGCCGAAGTTATCCCTTTTCATAATCGATAGTCAGAGCT
65 CTTTCATAATAGATAGCCAAAGCTATCCCTTTTCATAATCGATAGTCAGAGCT
* * * *
43392752 ATCCCTTTTCA-TATTTGATGGTCGTCACCATCCCTTTCAATAGTTGATGGTTATCACCATCCCT
1 ATCCCTTTTCATTAATTGATAGTCGTCACCATCCCTTTCAATAGTTGATGGTCATCACCATCCCC
*
43392816 TTTCATAATCGATAGCCAAAGCTATCCCTTTTCATAATCGATAG
66 TTTCATAATAGATAGCCAAAGCTATCCCTTTTCATAATCGATAG
43392860 CCGAAGCTTT
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
115 4 0.04
116 84 0.85
117 11 0.11
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (117 bp):
ATCCCTTTTCATTAATTGATAGTCGTCACCATCCCTTTCAATAGTTGATGGTCATCACCATCCCC
TTTCATAATAGATAGCCAAAGCTATCCCTTTTCATAATCGATAGTCAGAGCT
Found at i:43392814 original size:87 final size:84
Alignment explanation
Indices: 43392607--43392851 Score: 244
Period size: 87 Copynumber: 2.8 Consensus size: 84
43392597 ATCATAACTG
* * *
43392607 TCCCTTTTAATATTCGATGGTTGAAACCATCCCTTTTCATTAATTGATAGTC-GTCA-CCATCCC
1 TCCCTTTCAATATT-GATGGTT--AACCATCCCTTTTCA-TAATCGATAGTCAG--AGCTATCCC
43392670 TTTTCATAGTTGATGGTCGTCACCA
60 TTTTCATAGTTGATGGTCGTCACCA
* *** **
43392695 TCCCCTTTC-ATAATAGATAGCCGAAGTTATCCCTTTTCATAATCGATAGTCAGAGCTATCCCTT
1 T-CCCTTTCAAT-ATTGAT-GGTTAA-CCATCCCTTTTCATAATCGATAGTCAGAGCTATCCCTT
*
43392759 TTCATATTTGATGGTCGTCACCA
62 TTCATAGTTGATGGTCGTCACCA
* *
43392782 TCCCTTTCAATAGTTGATGGTTATCACCATCCCTTTTCATAATCGATAGCCAAAGCTATCCCTTT
1 TCCCTTTCAATA-TTGATGGTTA--ACCATCCCTTTTCATAATCGATAGTCAGAGCTATCCCTTT
43392847 TCATA
63 TCATA
43392852 ATCGATAGCC
Statistics
Matches: 129, Mismatches: 18, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
86 11 0.09
87 90 0.70
88 19 0.15
89 9 0.07
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (84 bp):
TCCCTTTCAATATTGATGGTTAACCATCCCTTTTCATAATCGATAGTCAGAGCTATCCCTTTTCA
TAGTTGATGGTCGTCACCA
Found at i:43392842 original size:29 final size:29
Alignment explanation
Indices: 43392810--43392908 Score: 144
Period size: 29 Copynumber: 3.4 Consensus size: 29
43392800 GGTTATCACC
*
43392810 ATCCCTTTTCATAATCGATAGCCAAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
43392839 ATCCCTTTTCATAATCGATAGCCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
* * * * *
43392868 TTCTCTTTTCACATTCGATAGCTGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAAGCT
43392897 ATCCCTTTTCAT
1 ATCCCTTTTCAT
43392909 TAGTCATTGA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.36
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCGAAGCT
Found at i:43404506 original size:20 final size:20
Alignment explanation
Indices: 43404483--43404532 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
43404473 GTGTCTCTAT
* *
43404483 TTGCACTTTGATGCCTTTGG
1 TTGCACTTTGATGCCTCTGC
43404503 TTGCACATTT-ATGCCTCTGC
1 TTGCAC-TTTGATGCCTCTGC
43404523 TTGCACTTTG
1 TTGCACTTTG
43404533 GTTCCTCTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 3 0.12
20 20 0.77
21 3 0.12
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.44
Consensus pattern (20 bp):
TTGCACTTTGATGCCTCTGC
Found at i:43406729 original size:50 final size:50
Alignment explanation
Indices: 43406606--43406758 Score: 128
Period size: 50 Copynumber: 2.9 Consensus size: 50
43406596 AATGCCATAT
* * **
43406606 CCCACGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGGC
1 CCCACATAAGACCATGTCTGGGACATGGCATGGGC---ACCGA-G--ATGAGAGGC
* * * * *
43406662 CCCACGTAAGACCATGTCTGGGGCATGGCGTTGGTACCGAGATGAGAGGTC
1 CCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAGG-C
* * *
43406713 CCC-CATAAGGCTATGTCTGGGACATGGCATGGGCACCGATATGAGA
1 CCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGA
43406759 ACTCTCATGT
Statistics
Matches: 83, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
50 43 0.52
51 4 0.05
52 1 0.01
53 3 0.04
56 32 0.39
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (50 bp):
CCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAGGC
Found at i:43407041 original size:50 final size:50
Alignment explanation
Indices: 43406934--43407122 Score: 189
Period size: 50 Copynumber: 3.7 Consensus size: 50
43406924 AAATGCCATA
**
43406934 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGG---TACCGA-G--ATGAGAGG
* *
43406990 TCCCACGTAAGACCATGTCTGGGGCATGGCGTTGGTACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGTACCGAGATGAGAGG
* * * * * **
43407040 TCCCCCGTAAGACTATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGTACCGAGATGAGAGG
* * * *
43407090 TCTCATGTAAGACCATATCTGGGATATGGCATT
1 TCCCACGTAAGACCATGTCTGGGACATGGCATT
43407123 TGTAGTACAG
Statistics
Matches: 113, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
50 75 0.66
52 1 0.01
53 4 0.04
56 33 0.29
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGTACCGAGATGAGAGG
Found at i:43407400 original size:329 final size:329
Alignment explanation
Indices: 43406375--43407366 Score: 1743
Period size: 329 Copynumber: 3.0 Consensus size: 329
43406365 TATTGAGGTT
* * * * ** * * * *
43406375 ATGAGAGGTCCCACGT-AGACCATGTTTGGGGCATGGTGTTGGTACCGAGATGAGAACTCCCATG
1 ATGAGAGGTCCCCCGTAAGACTATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCTCATG
* *
43406439 TAAGACCATATCTGGGATATGGCATTTGTAGTACAGGAAACATCCCATATAAGACCATGTCTGGG
66 TAAGACCATATCTGGGATATGGCATTTGTAGTACAGGAAACATCTCATATAAGACCATGTCCGGG
43406504 ACATGGCTTTGGCATGTTATTATCAGATAGGAGACCCGAGTATCCTTAGTATTCCAAGTGGTTCA
131 ACATGGCTTTGGCATGTTATTATCAGATAGGAGACCCGAGTATCCTTAGTATTCCAAGTGGTTCA
*
43406569 ACGGGCTAGTAAATAGACTATGTCACAAATGCCATATCCCACGTAAGACCATGTCTGGGACATGG
196 ACGGGCTAGTAAATAGACTATGTTACAAATGCCATATCCCACGTAAGACCATGTCTGGGACATGG
*
43406634 CATTGGCATTATTGAGGTTATGAGAGGCCCCACGTAAGACCATGTCTGGGGCATGGCGTTGGTAC
261 CATTGGCATTATTGAGGTTATGAGAGGTCCCACGTAAGACCATGTCTGGGGCATGGCGTTGGTAC
43406699 CGAG
326 CGAG
* *
43406703 ATGAGAGGTCCCCCATAAGGCTATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCTCATG
1 ATGAGAGGTCCCCCGTAAGACTATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCTCATG
43406768 TAAGACCATATCTGGGATATGGCATTTGTAGTACAGGAAACATCTCATATAAGACCATGTCCGGG
66 TAAGACCATATCTGGGATATGGCATTTGTAGTACAGGAAACATCTCATATAAGACCATGTCCGGG
43406833 ACATGGCTTTGGCATGTTATTATCAGATAGGAGACCCGAGTATCCTTAGTATTCCAAGTGGTTCA
131 ACATGGCTTTGGCATGTTATTATCAGATAGGAGACCCGAGTATCCTTAGTATTCCAAGTGGTTCA
43406898 ACGGGCTAGTAAATAGACTATGTTACAAATGCCATATCCCACGTAAGACCATGTCTGGGACATGG
196 ACGGGCTAGTAAATAGACTATGTTACAAATGCCATATCCCACGTAAGACCATGTCTGGGACATGG
43406963 CATTGGCATTATTGAGGTTATGAGAGGTCCCACGTAAGACCATGTCTGGGGCATGGCGTTGGTAC
261 CATTGGCATTATTGAGGTTATGAGAGGTCCCACGTAAGACCATGTCTGGGGCATGGCGTTGGTAC
43407028 CGAG
326 CGAG
43407032 ATGAGAGGTCCCCCGTAAGACTATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCTCATG
1 ATGAGAGGTCCCCCGTAAGACTATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCTCATG
43407097 TAAGACCATATCTGGGATATGGCATTTGTAGTACAGGAAACATCTCATATAAGACCATGTCCGGG
66 TAAGACCATATCTGGGATATGGCATTTGTAGTACAGGAAACATCTCATATAAGACCATGTCCGGG
*
43407162 ACATGGCTTTGGCATGTTATTATCAGATAGGAGACCCGAGTATCTTTAGTATTCCAAGTGGTTCA
131 ACATGGCTTTGGCATGTTATTATCAGATAGGAGACCCGAGTATCCTTAGTATTCCAAGTGGTTCA
* *
43407227 ACGGGCTAGTAAATAGACTATGTTACAAATGCCATATCCCACGTAAGAACATGTCTGGGCCATGG
196 ACGGGCTAGTAAATAGACTATGTTACAAATGCCATATCCCACGTAAGACCATGTCTGGGACATGG
* * * * * *
43407292 CATTGGCATTATTGAGGTTATGAGAGGTCCCACGTAAGGCTATGTCTGGGACATGGCATGGGCAC
261 CATTGGCATTATTGAGGTTATGAGAGGTCCCACGTAAGACCATGTCTGGGGCATGGCGTTGGTAC
*
43407357 CGAT
326 CGAG
43407361 ATGAGA
1 ATGAGA
43407367 ACTCTCATGT
Statistics
Matches: 635, Mismatches: 28, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
328 14 0.02
329 621 0.98
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.26
Consensus pattern (329 bp):
ATGAGAGGTCCCCCGTAAGACTATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCTCATG
TAAGACCATATCTGGGATATGGCATTTGTAGTACAGGAAACATCTCATATAAGACCATGTCCGGG
ACATGGCTTTGGCATGTTATTATCAGATAGGAGACCCGAGTATCCTTAGTATTCCAAGTGGTTCA
ACGGGCTAGTAAATAGACTATGTTACAAATGCCATATCCCACGTAAGACCATGTCTGGGACATGG
CATTGGCATTATTGAGGTTATGAGAGGTCCCACGTAAGACCATGTCTGGGGCATGGCGTTGGTAC
CGAG
Found at i:43417951 original size:20 final size:20
Alignment explanation
Indices: 43417926--43417964 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
43417916 TTGTACGAGA
*
43417926 TTGCACTTCGGTGCCTCTGC
1 TTGCACGTCGGTGCCTCTGC
43417946 TTGCACGTCGGTGCCTCTG
1 TTGCACGTCGGTGCCTCTG
43417965 TCTGTACTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.05, C:0.33, G:0.28, T:0.33
Consensus pattern (20 bp):
TTGCACGTCGGTGCCTCTGC
Found at i:43422505 original size:49 final size:52
Alignment explanation
Indices: 43422402--43422497 Score: 128
Period size: 49 Copynumber: 1.9 Consensus size: 52
43422392 ATACATGGCT
* *
43422402 TGGACGATTTCAAATGCATGAAGACATTTTTCCTCAATCAAATACATCAACA
1 TGGACGATTTCAAATGAAAGAAGACATTTTTCCTCAATCAAATACATCAACA
*
43422454 TGGACGATTTC-AATGAAAGGAGACA-TTTT-CTC-ATCCAAATACAT
1 TGGACGATTTCAAATGAAAGAAGACATTTTTCCTCAAT-CAAATACAT
43422498 TTGCATGGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
48 2 0.05
49 12 0.30
50 4 0.10
51 11 0.28
52 11 0.28
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.29
Consensus pattern (52 bp):
TGGACGATTTCAAATGAAAGAAGACATTTTTCCTCAATCAAATACATCAACA
Found at i:43427875 original size:19 final size:19
Alignment explanation
Indices: 43427817--43427875 Score: 57
Period size: 21 Copynumber: 3.0 Consensus size: 19
43427807 CATTTAATTA
* **
43427817 ATTTTTTAAAATTTAAAAT
1 ATTTTTAAAAATAAAAAAT
43427836 -TTTTTAAAAAATATAACAAAT
1 ATTTTT-AAAAATA-AA-AAAT
43427857 ATTTTTAAAAATAAAAAAT
1 ATTTTTAAAAATAAAAAAT
43427876 CATTAAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
18 5 0.15
19 9 0.27
20 3 0.09
21 11 0.33
22 5 0.15
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTTTTAAAAATAAAAAAT
Found at i:43428781 original size:2 final size:2
Alignment explanation
Indices: 43428774--43428800 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
43428764 ACTTCAAATG
43428774 CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT C
43428801 AGCTAGGCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:43432883 original size:20 final size:20
Alignment explanation
Indices: 43432852--43432907 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
43432842 CATTAAAACT
*
43432852 AAAAATATTATAAAAATAT-
1 AAAAAAATTATAAAAATATG
*
43432871 AAAAGAAATTATAAACATATG
1 AAAA-AAATTATAAAAATATG
43432892 AAAAAAATTAATAAAA
1 AAAAAAATT-ATAAAA
43432908 CCCAAAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 4 0.13
20 18 0.58
21 9 0.29
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.25
Consensus pattern (20 bp):
AAAAAAATTATAAAAATATG
Found at i:43436901 original size:21 final size:21
Alignment explanation
Indices: 43436875--43436915 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
43436865 AGACGAGCAA
* *
43436875 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
43436896 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
43436916 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:43438854 original size:16 final size:16
Alignment explanation
Indices: 43438821--43438854 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
43438811 GGAGATTGTT
* *
43438821 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
43438837 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
43438853 AA
1 AA
43438855 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:43444199 original size:30 final size:30
Alignment explanation
Indices: 43444163--43444224 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
43444153 TGGGGCAATT
* *
43444163 AAATCAATTTGATTAAAATAAAATAAAATC
1 AAATCAAATGGATTAAAATAAAATAAAATC
* *
43444193 AAATCAAATGGATTAGAATCAAATAAAATC
1 AAATCAAATGGATTAAAATAAAATAAAATC
43444223 AA
1 AA
43444225 GATAATACTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.60, C:0.08, G:0.06, T:0.26
Consensus pattern (30 bp):
AAATCAAATGGATTAAAATAAAATAAAATC
Found at i:43451779 original size:56 final size:56
Alignment explanation
Indices: 43451715--43451826 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
43451705 TAATTTGATG
43451715 ATTAATGTTATTTAAACTATTTATTAAGTTCGAGTGGTAAGACCTTAAGGTCAAGT
1 ATTAATGTTATTTAAACTATTTATTAAGTTCGAGTGGTAAGACCTTAAGGTCAAGT
*
43451771 ATTAATGTTATTTAAACTATTTATTAAGTTCGAGTGGTAAGACCTTAATGTCAAGT
1 ATTAATGTTATTTAAACTATTTATTAAGTTCGAGTGGTAAGACCTTAAGGTCAAGT
43451827 GGTTTTAGAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (56 bp):
ATTAATGTTATTTAAACTATTTATTAAGTTCGAGTGGTAAGACCTTAAGGTCAAGT
Found at i:43452430 original size:117 final size:117
Alignment explanation
Indices: 43452224--43452456 Score: 448
Period size: 117 Copynumber: 2.0 Consensus size: 117
43452214 GAAACACCAT
*
43452224 GAGAACTCAACTTTGGAGGTTCGGCCATTTTTAATTCTTGCATGTAATCCCATTTTGATTCCGTT
1 GAGAACTCAACTTTGGAGGTTCGGCCATTTTTAATTCTTGCATGTAATCCCATTTTGATTCCATT
43452289 TCTTGTAATGTTTATATTTTTGAGATCGTTGCAACTAGGTCCAGCTAGGTCA
66 TCTTGTAATGTTTATATTTTTGAGATCGTTGCAACTAGGTCCAGCTAGGTCA
43452341 GAGAACTCAACTTTGGAGGTTCGGCCATTTTTAATTCTTGCATGTAATCCCATTTTGATTCCATT
1 GAGAACTCAACTTTGGAGGTTCGGCCATTTTTAATTCTTGCATGTAATCCCATTTTGATTCCATT
*
43452406 TCTTGTAATTTTTATATTTTTGAGATCGTTGCAACTAGGTCCAGCTAGGTC
66 TCTTGTAATGTTTATATTTTTGAGATCGTTGCAACTAGGTCCAGCTAGGTC
43452457 GTACCTTCAT
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
117 114 1.00
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (117 bp):
GAGAACTCAACTTTGGAGGTTCGGCCATTTTTAATTCTTGCATGTAATCCCATTTTGATTCCATT
TCTTGTAATGTTTATATTTTTGAGATCGTTGCAACTAGGTCCAGCTAGGTCA
Found at i:43465053 original size:88 final size:86
Alignment explanation
Indices: 43464851--43465194 Score: 342
Period size: 88 Copynumber: 4.0 Consensus size: 86
43464841 TGATTAAGTG
* ** * * * * *
43464851 TTCTCGTTTGGAAAAAAAAT-AAAATAAAATAAAATTTGTTAAACGGCGAGAATAAATCCTGAAA
1 TTCTCGTTTGGAAACAAAATAAAAATGGAATAAAATCTGTTGAATGGTGAGAATAAATCCCGAAA
* *
43464915 CAGA-TTT-T-CAA-TTTA-A
66 CAGATTTTATATAATTTTATT
** * * * *
43464931 TTCTATTTTAGAAACAAAATTAAAATCGAATAAAATCTGTTAAATGGTGAGAATAAATCCCGAAA
1 TTCTCGTTTGGAAACAAAATAAAAATGGAATAAAATCTGTTGAATGGTGAGAATAAATCCCGAAA
* *
43464996 CATATTTTATTTAATTTTATT
66 CAGATTTTATATAATTTTATT
* * * *
43465017 TTCTCGTTTTGGCAACAAAATAAAAAATGGAATAAAATCTATTGAATGGTGGGAATAAATCCTGA
1 TTCTCG-TTTGGAAACAAAAT-AAAAATGGAATAAAATCTGTTGAATGGTGAGAATAAATCCCGA
*
43465082 AACAGATTTTATATAATTTT-TAA
64 AACAGATTTTATATAATTTTAT-T
* * * * *
43465105 TACTCGTTTGGAAACATAATAAAAATGGAATAAAATCTGTTGAACGGCGAAAATAAATCCCGAAA
1 TTCTCGTTTGGAAACAAAATAAAAATGGAATAAAATCTGTTGAATGGTGAGAATAAATCCCGAAA
*
43465170 CAGAATTTATATAATTTTTATT
66 CAGATTTTATATAA-TTTTATT
43465192 TTC
1 TTC
43465195 AAATAAAAAA
Statistics
Matches: 215, Mismatches: 38, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
80 16 0.07
81 41 0.19
82 3 0.01
83 1 0.00
84 2 0.01
85 4 0.02
86 56 0.26
87 31 0.14
88 61 0.28
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (86 bp):
TTCTCGTTTGGAAACAAAATAAAAATGGAATAAAATCTGTTGAATGGTGAGAATAAATCCCGAAA
CAGATTTTATATAATTTTATT
Found at i:43465170 original size:86 final size:85
Alignment explanation
Indices: 43464851--43465187 Score: 351
Period size: 86 Copynumber: 4.0 Consensus size: 85
43464841 TGATTAAGTG
* ** * *
43464851 TTCTCGTTTGGAAAAAAAAT-AAAATAAAATAAAATTTGTTAAACGGCGAGAATAAATCCTGAAA
1 TTCTCGTTTGGAAACAAAATAAAAATGGAATAAAATCTGTTAAACGGCGAGAATAAATCCCGAAA
*
43464915 CAGA-TTT-T-CAA-TTTAA
66 CAGATTTTATATAATTTTAA
** * * * * *
43464931 TTCTATTTTAGAAACAAAATTAAAATCGAATAAAATCTGTTAAATGGTGAGAATAAATCCCGAAA
1 TTCTCGTTTGGAAACAAAATAAAAATGGAATAAAATCTGTTAAACGGCGAGAATAAATCCCGAAA
* * *
43464996 CATATTTTATTTAATTTTATT
66 CAGATTTTATATAATTTTA-A
* * * * * * *
43465017 TTCTCGTTTTGGCAACAAAATAAAAAATGGAATAAAATCTATTGAATGGTGGGAATAAATCCTGA
1 TTCTCG-TTTGGAAACAAAAT-AAAAATGGAATAAAATCTGTTAAACGGCGAGAATAAATCCCGA
43465082 AACAGATTTTATATAATTTTTAA
64 AACAGATTTTATATAA-TTTTAA
* * * *
43465105 TACTCGTTTGGAAACATAATAAAAATGGAATAAAATCTGTTGAACGGCGAAAATAAATCCCGAAA
1 TTCTCGTTTGGAAACAAAATAAAAATGGAATAAAATCTGTTAAACGGCGAGAATAAATCCCGAAA
*
43465170 CAGAATTTATATAATTTT
66 CAGATTTTATATAATTTT
43465188 TATTTTCAAA
Statistics
Matches: 212, Mismatches: 36, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
80 16 0.08
81 41 0.19
82 3 0.01
83 1 0.00
84 2 0.01
85 8 0.04
86 56 0.26
87 24 0.11
88 56 0.26
89 5 0.02
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.33
Consensus pattern (85 bp):
TTCTCGTTTGGAAACAAAATAAAAATGGAATAAAATCTGTTAAACGGCGAGAATAAATCCCGAAA
CAGATTTTATATAATTTTAA
Found at i:43465401 original size:20 final size:21
Alignment explanation
Indices: 43465376--43465415 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
43465366 AAATTATCGG
43465376 ATATAA-AAAA-CCAATAAATA
1 ATATAACAAAAGCCAA-AAATA
43465396 ATATAACAAAAGCCAAAAAT
1 ATATAACAAAAGCCAAAAAT
43465416 CAAAAAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.68, C:0.12, G:0.03, T:0.17
Consensus pattern (21 bp):
ATATAACAAAAGCCAAAAATA
Found at i:43466881 original size:22 final size:22
Alignment explanation
Indices: 43466854--43466901 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
43466844 TTCTAATAAG
43466854 TTTTTATA-ACTTTTTTTATCAA
1 TTTTTATAGACTTTTTTTATC-A
*
43466876 TTTTTATAGATTTTTTTTATCA
1 TTTTTATAGACTTTTTTTATCA
43466898 TTTT
1 TTTT
43466902 CATTATTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTTTATAGACTTTTTTTATCA
Found at i:43476949 original size:142 final size:136
Alignment explanation
Indices: 43476686--43476955 Score: 396
Period size: 142 Copynumber: 1.9 Consensus size: 136
43476676 CATGATGAAT
* * *
43476686 ATGAAAATGCTCGAATTTATAAAGACAAAACCAAGGTGTTTCATGATCAAAAGATAAAATGATTT
1 ATGAAAATGCTCGAAATTATAAAAACAAAACCAAGGTGTTTCATGATCAAAAGATAAAACGATTT
* * * *
43476751 TTAATAGGATAAAAAGTGTTACTTTATGATCCCACACTAAGGATCTTTGTAGGTAAACTTCGAAC
66 TTAATAGGACAAAAAATGTTACTTTATGATCCCACACTAAGGATCTTTGCAAGTAAACTTCGAAC
43476816 CACATC
131 CACATC
*
43476822 ATGAAAATGTTCGAAATTATAAAAACAAAACCAAGGTGTTTCATGATCAAAAGATATCTCGTAAA
1 ATGAAAATGCTCGAAATTATAAAAACAAAACCAAGGTGTTTCATGATCAAAAGATA------AAA
* *
43476887 CGATTTTTAGTAGGACAAAAAATGTTGCTTTATGATCCCACACTAAGGATCTTTGCAAGTAAACT
60 CGATTTTTAATAGGACAAAAAATGTTACTTTATGATCCCACACTAAGGATCTTTGCAAGTAAACT
43476952 TCGA
125 TCGA
43476956 GCCAAGTGGT
Statistics
Matches: 118, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
136 53 0.45
142 65 0.55
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (136 bp):
ATGAAAATGCTCGAAATTATAAAAACAAAACCAAGGTGTTTCATGATCAAAAGATAAAACGATTT
TTAATAGGACAAAAAATGTTACTTTATGATCCCACACTAAGGATCTTTGCAAGTAAACTTCGAAC
CACATC
Found at i:43484607 original size:11 final size:11
Alignment explanation
Indices: 43484591--43484615 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
43484581 ACAATTTCTA
43484591 GTGACTATATT
1 GTGACTATATT
43484602 GTGACTATATT
1 GTGACTATATT
43484613 GTG
1 GTG
43484616 TATCTGCAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.44
Consensus pattern (11 bp):
GTGACTATATT
Found at i:43488949 original size:14 final size:13
Alignment explanation
Indices: 43488917--43488950 Score: 52
Period size: 12 Copynumber: 2.6 Consensus size: 13
43488907 AAAATAGCAG
43488917 GCCTAAAATACTA
1 GCCTAAAATACTA
43488930 -CCTAAAATACTAA
1 GCCTAAAATACT-A
43488943 GCCTAAAA
1 GCCTAAAA
43488951 CCCAAATTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 11 0.58
13 1 0.05
14 7 0.37
ACGTcount: A:0.50, C:0.24, G:0.06, T:0.21
Consensus pattern (13 bp):
GCCTAAAATACTA
Found at i:43490283 original size:13 final size:12
Alignment explanation
Indices: 43490252--43490284 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
43490242 GTATATGTAA
43490252 TTTTAAATGATT
1 TTTTAAATGATT
43490264 TTTTAAATGATT
1 TTTTAAATGATT
43490276 TATTTAAAT
1 T-TTTAAAT
43490285 TTGTTCCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.65
13 7 0.35
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (12 bp):
TTTTAAATGATT
Found at i:43501484 original size:18 final size:18
Alignment explanation
Indices: 43501463--43501500 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
43501453 ATGTTTATTT
43501463 ATGGTGA-GATTAAAAATA
1 ATGGTGACGA-TAAAAATA
*
43501481 ATGGTGACGATAAAATTA
1 ATGGTGACGATAAAAATA
43501499 AT
1 AT
43501501 TATTATAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.47, C:0.03, G:0.21, T:0.29
Consensus pattern (18 bp):
ATGGTGACGATAAAAATA
Found at i:43501718 original size:15 final size:16
Alignment explanation
Indices: 43501685--43501725 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
43501675 TTTATTAATA
43501685 ATTAATTA-ATTTATC
1 ATTAATTATATTTATC
*
43501700 ATTAATTATATTTGT-
1 ATTAATTATATTTATC
*
43501715 ATTATTTATAT
1 ATTAATTATAT
43501726 ATATTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 18 0.78
16 5 0.22
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (16 bp):
ATTAATTATATTTATC
Found at i:43505016 original size:25 final size:25
Alignment explanation
Indices: 43504966--43505027 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
43504956 TCCACTGCAT
* ***
43504966 GTGAGAGCATACCGATTTATGGCTC
1 GTGAGAGCATACCGATTCACAACTC
43504991 GTGAGAGCATACCGATTCACAACTC
1 GTGAGAGCATACCGATTCACAACTC
43505016 GT-ATGAGCATAC
1 GTGA-GAGCATAC
43505028 TTGTACATGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 1 0.03
25 31 0.97
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (25 bp):
GTGAGAGCATACCGATTCACAACTC
Found at i:43506473 original size:73 final size:73
Alignment explanation
Indices: 43506309--43507445 Score: 1903
Period size: 73 Copynumber: 15.7 Consensus size: 73
43506299 TGGGCAGCTC
* * * * * *
43506309 TTATACATCAAATCGAACAGCA-TTTATACACCCAATTGGACAG--TATATATATACCAAATTGG
1 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
* *
43506371 ATAGCA-T
66 ACAACATT
43506378 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
1 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
43506443 ACAACATT
66 ACAACATT
43506451 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
1 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
43506516 ACAACATT
66 ACAACATT
43506524 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
1 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
43506589 ACAACATT
66 ACAACATT
43506597 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
1 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
43506662 ACAACATT
66 ACAACATT
43506670 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
1 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
43506735 ACAACATT
66 ACAACATT
43506743 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
1 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
43506808 ACAACATT
66 ACAACATT
43506816 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
1 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
43506881 ACAACATT
66 ACAACATT
43506889 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
1 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
43506954 ACAACATT
66 ACAACATT
43506962 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
1 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
43507027 ACAACATT
66 ACAACATT
43507035 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
1 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
43507100 ACAACATT
66 ACAACATT
43507108 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
1 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
43507173 ACAACATT
66 ACAACATT
* *
43507181 TTATACACCAAATTGGACAGCA-TTTATACACCAAAATTGGACAGCAT-T-TATACACCAAAATT
1 TTATACACCAAATTGGACAGCATTTTATACACC-AAATTGAACAGCATATATATATA-CAAAATT
*
43507243 GGACAGCA-T
64 GGACAACATT
* *
43507252 TTATACACCAAAATTGGACAGCA-TTTATACACCAAAATTGGACAGCAT-T-TATACACCAAAAT
1 TTATACACC-AAATTGGACAGCATTTTATACACC-AAATTGAACAGCATATATATATA-CAAAAT
*
43507314 TGGACAGCA-T
63 TGGACAACATT
** * *
43507324 TTATACACCAAAATTGGACAGCA-TTTATACACCAAATTGGGCAG-A-ATATATATTCCAAATTG
1 TTATACACC-AAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTG
*
43507386 GACAGCA-T
65 GACAACATT
* *
43507394 TTATACACCAAAATTGGACAGCA-TTTATACACCAAATTGGACAACATATATA
1 TTATACACC-AAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATA
43507446 CACTAAATTC
Statistics
Matches: 1040, Mismatches: 17, Indels: 19
0.97 0.02 0.02
Matches are distributed among these distances:
69 19 0.02
70 78 0.08
71 30 0.03
72 147 0.14
73 766 0.74
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.28
Consensus pattern (73 bp):
TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
ACAACATT
Found at i:43509085 original size:50 final size:50
Alignment explanation
Indices: 43508945--43509194 Score: 284
Period size: 50 Copynumber: 4.9 Consensus size: 50
43508935 CATTTGGGTA
43508945 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* *
43508995 AAGAGGTCCCATGGTCATGTAAGACCATGTCTGGGACATGGCGTTGGGACCAAGAT
1 AAGAGGT-CC-----CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* * *
43509051 GAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
* *** * * * * *
43509101 GAGAGGTCCCCCATAAGACCATGTTTGAGACATGGCATGGGCACCGATAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
** *
43509151 AAGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AAG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
43509195 TGTTATTATC
Statistics
Matches: 170, Mismatches: 23, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
50 90 0.53
51 33 0.19
55 2 0.01
56 45 0.26
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
Found at i:43509092 original size:106 final size:100
Alignment explanation
Indices: 43508945--43509194 Score: 304
Period size: 106 Copynumber: 2.4 Consensus size: 100
43508935 CATTTGGGTA
* *
43508945 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATAAGAGGTCCCATGGT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGGTCCC----C
* *
43509010 CATGTAAGACCATGTCTGGGACATGGCGTTGGG-ACCAAGAT
62 CA--TAAGACCATGTCTGAGACATGGC-ATGGGCACCAAGAT
* * *
43509051 GAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAGATGAGAGGTCCCCCATA
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGGTCCCCCATA
* * *
43509116 AGACCATGTTTGAGACATGGCATGGGCACCGATAT
66 AGACCATGTCTGAGACATGGCATGGGCACCAAGAT
** *
43509151 AAGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AAG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
43509195 TGTTATTATC
Statistics
Matches: 127, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
99 4 0.03
100 29 0.23
101 36 0.28
102 2 0.02
106 56 0.44
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.21
Consensus pattern (100 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATAAGAGGTCCCCCATA
AGACCATGTCTGAGACATGGCATGGGCACCAAGAT
Found at i:43511114 original size:43 final size:42
Alignment explanation
Indices: 43511004--43511128 Score: 116
Period size: 43 Copynumber: 2.9 Consensus size: 42
43510994 CATATCGTAC
* *
43511004 AATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAC-ATA
1 AATGCCAACGTCCTAGACGTGGTCTTACACGTAAACACAATA
* *
43511045 ACGATGCC-ACTGTCCCATATA-G-GGTCTTACACGTAAACACAAGTT
1 A--ATGCCAAC-GT-CC-TAGACGTGGTCTTACACGTAAACACAA-TA
43511090 AATGCCAACGTCCTAGACGTGGTCTTACACG-ATAACACA
1 AATGCCAACGTCCTAGACGTGGTCTTACACGTA-AACACA
43511129 TAACGAAATC
Statistics
Matches: 68, Mismatches: 5, Indels: 20
0.73 0.05 0.22
Matches are distributed among these distances:
41 4 0.06
42 6 0.09
43 47 0.69
44 6 0.09
45 5 0.07
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
AATGCCAACGTCCTAGACGTGGTCTTACACGTAAACACAATA
Found at i:43512704 original size:12 final size:12
Alignment explanation
Indices: 43512687--43512711 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
43512677 AGGCTATTAG
43512687 ACGGCCTAGCAC
1 ACGGCCTAGCAC
43512699 ACGGCCTAGCAC
1 ACGGCCTAGCAC
43512711 A
1 A
43512712 TGGACGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.40, G:0.24, T:0.08
Consensus pattern (12 bp):
ACGGCCTAGCAC
Found at i:43523023 original size:21 final size:21
Alignment explanation
Indices: 43522989--43523029 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
43522979 CTTTTCTAGC
43522989 CCTCGCACCACCACACAAGCA
1 CCTCGCACCACCACACAAGCA
*
43523010 CCTCG-ACCAGCCACCCAAGC
1 CCTCGCACCA-CCACACAAGC
43523030 CACGCCCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.29, C:0.54, G:0.12, T:0.05
Consensus pattern (21 bp):
CCTCGCACCACCACACAAGCA
Found at i:43523273 original size:18 final size:17
Alignment explanation
Indices: 43523244--43523281 Score: 67
Period size: 18 Copynumber: 2.2 Consensus size: 17
43523234 TCCACCGTCG
43523244 TTTTATTTTATTTTTAT
1 TTTTATTTTATTTTTAT
43523261 TTTTATGTTTATTTTTAT
1 TTTTAT-TTTATTTTTAT
43523279 TTT
1 TTT
43523282 CTTAGTCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTATTTTATTTTTAT
Found at i:43523329 original size:6 final size:6
Alignment explanation
Indices: 43523244--43523281 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
43523234 TCCACCGTCG
*
43523244 TTTTA- TTTTAT TTTTAT TTTTAT GTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
43523282 CTTAGTCTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:43525573 original size:58 final size:58
Alignment explanation
Indices: 43525461--43525575 Score: 187
Period size: 58 Copynumber: 2.0 Consensus size: 58
43525451 TAAATACTTG
* * *
43525461 ATTCTTGTTCTCAATTATGTATTCTTATTTCATGTTTTAATAATCTAAATATATTAAA
1 ATTCTTGTTCTCAATTATGTATGCTTATTTCATGTTTTAATAATCCAAAGATATTAAA
43525519 ATTCTTGTTCTCAATTATGTATGCTTATTTCATGTTTTAATAA-CCAAAGGATATTAA
1 ATTCTTGTTCTCAATTATGTATGCTTATTTCATGTTTTAATAATCCAAA-GATATTAA
43525576 TTCATGTTTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
57 4 0.08
58 49 0.92
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.49
Consensus pattern (58 bp):
ATTCTTGTTCTCAATTATGTATGCTTATTTCATGTTTTAATAATCCAAAGATATTAAA
Found at i:43527024 original size:25 final size:25
Alignment explanation
Indices: 43526974--43527035 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
43526964 TCCACTGCAT
* ***
43526974 GTGAGAGCATACCGATTTATGGCTC
1 GTGAGAGCATACCGATTCACAACTC
43526999 GTGAGAGCATACCGATTCACAACTC
1 GTGAGAGCATACCGATTCACAACTC
43527024 GT-ATGAGCATAC
1 GTGA-GAGCATAC
43527036 TTGTACATGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 1 0.03
25 31 0.97
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (25 bp):
GTGAGAGCATACCGATTCACAACTC
Found at i:43528343 original size:23 final size:23
Alignment explanation
Indices: 43528317--43528658 Score: 432
Period size: 23 Copynumber: 14.6 Consensus size: 23
43528307 TGGGCAGCTC
* * *
43528317 TTATACATCAAATCGAACAGCAT
1 TTATACACCAAATTGGACAGCAT
* *
43528340 TTATACACCCAATTGGACAGTAT
1 TTATACACCAAATTGGACAGCAT
* * *
43528363 ATATATACCAAATTGGATAGCAT
1 TTATACACCAAATTGGACAGCAT
43528386 TTATACACCAAATTGGACAGCATT
1 TTATACACCAAATTGGACAGCA-T
*
43528410 TTATACACCAAATTGAACAGCAT
1 TTATACACCAAATTGGACAGCAT
* * *
43528433 ATATATATACAAAATTGGACAACATT
1 -T-TATACACCAAATTGGACAGCA-T
43528459 TTATACACCAAATTGGACAGCAT
1 TTATACACCAAATTGGACAGCAT
*
43528482 TTATACACCAAATTGGACAACAT
1 TTATACACCAAATTGGACAGCAT
43528505 TTATACACCAAAATTGGACAGCAT
1 TTATACACC-AAATTGGACAGCAT
*
43528529 ATATACACCAAATTGGACAGCAT
1 TTATACACCAAATTGGACAGCAT
* *
43528552 TTATACACCAAATTGGGCAGAAT
1 TTATACACCAAATTGGACAGCAT
* **
43528575 ATATATTCCAAATTGGACAGCAT
1 TTATACACCAAATTGGACAGCAT
43528598 TTATACACCAAAATTGGACAGCAT
1 TTATACACC-AAATTGGACAGCAT
*
43528622 TTATACACCAAATTGGACAACAT
1 TTATACACCAAATTGGACAGCAT
* *
43528645 ATATACACTAAATT
1 TTATACACCAAATT
43528659 CACTTGAATC
Statistics
Matches: 275, Mismatches: 38, Indels: 12
0.85 0.12 0.04
Matches are distributed among these distances:
23 171 0.62
24 85 0.31
25 18 0.07
26 1 0.00
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.27
Consensus pattern (23 bp):
TTATACACCAAATTGGACAGCAT
Found at i:43528436 original size:70 final size:69
Alignment explanation
Indices: 43528317--43528658 Score: 459
Period size: 70 Copynumber: 4.9 Consensus size: 69
43528307 TGGGCAGCTC
* * * * * *
43528317 TTATACATCAAATCGAACAGCATTTATACACCCAATTGGACAGTATATATATACCAAATTGGATA
1 TTATACACCAAATTGGACAGCATTTATACACCAAATTGGACAGCATATATATACCAAATTGGACA
43528382 GCAT
66 GCAT
* *
43528386 TTATACACCAAATTGGACAGCATTTTATACACCAAATTGAACAGCATATATATATACAAAATTGG
1 TTATACACCAAATTGGACAGCA-TTTATACACCAAATTGGACAGC--ATATATATACCAAATTGG
*
43528451 ACAACATT
63 ACAGCA-T
* * *
43528459 TTATACACCAAATTGGACAGCATTTATACACCAAATTGGACAACATTTATACACCAAAATTGGAC
1 TTATACACCAAATTGGACAGCATTTATACACCAAATTGGACAGCATATATATACC-AAATTGGAC
43528524 AGCAT
65 AGCAT
* * * *
43528529 ATATACACCAAATTGGACAGCATTTATACACCAAATTGGGCAGAATATATATTCCAAATTGGACA
1 TTATACACCAAATTGGACAGCATTTATACACCAAATTGGACAGCATATATATACCAAATTGGACA
43528594 GCAT
66 GCAT
* * *
43528598 TTATACACCAAAATTGGACAGCATTTATACACCAAATTGGACAACATATATACACTAAATT
1 TTATACACC-AAATTGGACAGCATTTATACACCAAATTGGACAGCATATATATACCAAATT
43528659 CACTTGAATC
Statistics
Matches: 238, Mismatches: 29, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
69 41 0.17
70 121 0.51
71 12 0.05
72 41 0.17
73 23 0.10
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.27
Consensus pattern (69 bp):
TTATACACCAAATTGGACAGCATTTATACACCAAATTGGACAGCATATATATACCAAATTGGACA
GCAT
Found at i:43528519 original size:47 final size:46
Alignment explanation
Indices: 43528317--43528658 Score: 432
Period size: 47 Copynumber: 7.3 Consensus size: 46
43528307 TGGGCAGCTC
* * * * *
43528317 TTATACATCAAATCGAACAGCATTTATACACCCAATTGGACAGTAT
1 TTATACACCAAATTGGACAGCATTTATACACCAAATTGGACAGCAT
* * *
43528363 ATATATACCAAATTGGATAGCATTTATACACCAAATTGGACAGCATT
1 TTATACACCAAATTGGACAGCATTTATACACCAAATTGGACAGCA-T
* * * *
43528410 TTATACACCAAATTGAACAGCATATATATATACAAAATTGGACAACATT
1 TTATACACCAAATTGGACAGCAT-T-TATACACCAAATTGGACAGCA-T
*
43528459 TTATACACCAAATTGGACAGCATTTATACACCAAATTGGACAACAT
1 TTATACACCAAATTGGACAGCATTTATACACCAAATTGGACAGCAT
*
43528505 TTATACACCAAAATTGGACAGCATATATACACCAAATTGGACAGCAT
1 TTATACACC-AAATTGGACAGCATTTATACACCAAATTGGACAGCAT
* * * **
43528552 TTATACACCAAATTGGGCAGAATATATATTCCAAATTGGACAGCAT
1 TTATACACCAAATTGGACAGCATTTATACACCAAATTGGACAGCAT
*
43528598 TTATACACCAAAATTGGACAGCATTTATACACCAAATTGGACAACAT
1 TTATACACC-AAATTGGACAGCATTTATACACCAAATTGGACAGCAT
* *
43528645 ATATACACTAAATT
1 TTATACACCAAATT
43528659 CACTTGAATC
Statistics
Matches: 259, Mismatches: 32, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
46 94 0.36
47 121 0.47
48 2 0.01
49 42 0.16
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.27
Consensus pattern (46 bp):
TTATACACCAAATTGGACAGCATTTATACACCAAATTGGACAGCAT
Found at i:43530231 original size:50 final size:50
Alignment explanation
Indices: 43530150--43530543 Score: 482
Period size: 50 Copynumber: 7.8 Consensus size: 50
43530140 ATTTGGGTAA
43530150 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*** * * * * *
43530200 AGAGGTCCCCCATAAGACCATGTTTGAGACATGGCATGGGCACCGATATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
43530250 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGGACCAAGATG
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* **
43530301 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGTTACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
43530351 AGATGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGGACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
43530401 AGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*** * * * * *
43530451 AGAGGTCCCCCATAAGACCATGTTTGAGACATGGCATGGGCACCGATATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
43530501 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
43530544 TGTTATTATC
Statistics
Matches: 291, Mismatches: 51, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
50 223 0.77
51 68 0.23
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:43532463 original size:43 final size:42
Alignment explanation
Indices: 43532353--43532477 Score: 116
Period size: 43 Copynumber: 2.9 Consensus size: 42
43532343 CATATCGTAC
* *
43532353 AATGCCAACGTCCTAGACGTGGTCTTACATGTAATCAC-ATA
1 AATGCCAACGTCCTAGACGTGGTCTTACACGTAAACACAATA
* *
43532394 ACGATGCC-ACTGTCCCATATA-G-GGTCTTACACGTAAACACAAGTT
1 A--ATGCCAAC-GT-CC-TAGACGTGGTCTTACACGTAAACACAA-TA
43532439 AATGCCAACGTCCTAGACGTGGTCTTACACG-ATAACACA
1 AATGCCAACGTCCTAGACGTGGTCTTACACGTA-AACACA
43532478 TAACGAAATC
Statistics
Matches: 68, Mismatches: 5, Indels: 20
0.73 0.05 0.22
Matches are distributed among these distances:
41 4 0.06
42 6 0.09
43 47 0.69
44 6 0.09
45 5 0.07
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
AATGCCAACGTCCTAGACGTGGTCTTACACGTAAACACAATA
Found at i:43534053 original size:12 final size:12
Alignment explanation
Indices: 43534036--43534060 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
43534026 AGGCTATTAG
43534036 ACGGCCTAGCAC
1 ACGGCCTAGCAC
43534048 ACGGCCTAGCAC
1 ACGGCCTAGCAC
43534060 A
1 A
43534061 TGGACGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.40, G:0.24, T:0.08
Consensus pattern (12 bp):
ACGGCCTAGCAC
Found at i:43544372 original size:21 final size:21
Alignment explanation
Indices: 43544338--43544378 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
43544328 CTTTTCTAGC
43544338 CCTCGCACCACCACACAAGCA
1 CCTCGCACCACCACACAAGCA
*
43544359 CCTCG-ACCAGCCACCCAAGC
1 CCTCGCACCA-CCACACAAGC
43544379 CACGCCCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.29, C:0.54, G:0.12, T:0.05
Consensus pattern (21 bp):
CCTCGCACCACCACACAAGCA
Found at i:43544622 original size:18 final size:17
Alignment explanation
Indices: 43544593--43544630 Score: 67
Period size: 18 Copynumber: 2.2 Consensus size: 17
43544583 TCCACCGTCG
43544593 TTTTATTTTATTTTTAT
1 TTTTATTTTATTTTTAT
43544610 TTTTATGTTTATTTTTAT
1 TTTTAT-TTTATTTTTAT
43544628 TTT
1 TTT
43544631 CTTAGTCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTTATTTTATTTTTAT
Found at i:43544678 original size:6 final size:6
Alignment explanation
Indices: 43544593--43544630 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
43544583 TCCACCGTCG
*
43544593 TTTTA- TTTTAT TTTTAT TTTTAT GTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
43544631 CTTAGTCTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:43548307 original size:25 final size:26
Alignment explanation
Indices: 43548279--43548358 Score: 85
Period size: 25 Copynumber: 3.2 Consensus size: 26
43548269 CTCGTGAAAA
*
43548279 CATACCGATTTATAGCTCGTGA-GAG
1 CATACCGATTTACAGCTCGTGATGAG
* * **
43548304 CATATCGATCTACAGCTC-AAATGAG
1 CATACCGATTTACAGCTCGTGATGAG
*
43548329 CATACCGATTCACAGCTCGT-ATGAG
1 CATACCGATTTACAGCTCGTGATGAG
43548354 CATAC
1 CATAC
43548359 TTGTACATGA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
24 1 0.02
25 43 0.98
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACCGATTTACAGCTCGTGATGAG
Found at i:43549476 original size:27 final size:28
Alignment explanation
Indices: 43549438--43549821 Score: 398
Period size: 27 Copynumber: 14.2 Consensus size: 28
43549428 ATACACTGTT
* *
43549438 ATGACCAAAATACCCTCGA-AGGGTAAA
1 ATGACCGAAATACCCTCTATAGGGTAAA
* *
43549465 ATGATCGAAATACCCTCGA-AGGGTAAA
1 ATGACCGAAATACCCTCTATAGGGTAAA
* *
43549492 ATGACTGAAATACCCT-AATAGGGTAAA
1 ATGACCGAAATACCCTCTATAGGGTAAA
* * *
43549519 ATGACCGAAATACCC-CCATAGAGTAGA
1 ATGACCGAAATACCCTCTATAGGGTAAA
* * ** *
43549546 ATGACTGAAATACCCCCTCGAAGGTAAA
1 ATGACCGAAATACCCTCTATAGGGTAAA
*
43549574 ATGACCGAAATA-CCTCTATAGGGTAGA
1 ATGACCGAAATACCCTCTATAGGGTAAA
* **
43549601 ATAATTGAAATACCC-CTATAGGGTAAA
1 ATGACCGAAATACCCTCTATAGGGTAAA
*
43549628 ATGACCGAAATACCCTC-ATAGGGTAGA
1 ATGACCGAAATACCCTCTATAGGGTAAA
* *
43549655 ATGATCGAAATACCC-CTATAGGGTAAC
1 ATGACCGAAATACCCTCTATAGGGTAAA
* *
43549682 ATGATCGAAATACCC-CTATAGGGTAAC
1 ATGACCGAAATACCCTCTATAGGGTAAA
*
43549709 ATGATCGAAATACCC-CTATAGGGTAAA
1 ATGACCGAAATACCCTCTATAGGGTAAA
* * *
43549736 GTAACCAAAATACCCTC-ATAGGGTAAA
1 ATGACCGAAATACCCTCTATAGGGTAAA
* *
43549763 ATGACCGAAATACCC-CCATAAGGTAAA
1 ATGACCGAAATACCCTCTATAGGGTAAA
* *
43549790 ATGACCGAAATACCC-CCATAGGATAAA
1 ATGACCGAAATACCCTCTATAGGGTAAA
43549817 ATGAC
1 ATGAC
43549822 TTTTATACCC
Statistics
Matches: 305, Mismatches: 44, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.01
27 281 0.92
28 21 0.07
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.19
Consensus pattern (28 bp):
ATGACCGAAATACCCTCTATAGGGTAAA
Found at i:43553023 original size:11 final size:11
Alignment explanation
Indices: 43553009--43553034 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
43552999 ATTTTTTAAA
43553009 TTTTAAAATAC
1 TTTTAAAATAC
43553020 TTTTAAAATAC
1 TTTTAAAATAC
43553031 TTTT
1 TTTT
43553035 TTTAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:43553035 original size:41 final size:42
Alignment explanation
Indices: 43552990--43553102 Score: 133
Period size: 41 Copynumber: 2.7 Consensus size: 42
43552980 ATTTTTTTAT
43552990 TTTTTATTTATTTTTTAAATTTTAAAATACTTTTAAAAT-AC
1 TTTTTATTTATTTTTTAAATTTTAAAATACTTTTAAAATAAC
* * * *
43553031 TTTTT-TTAAATTTTTTTAATTTTAAAATATTTTTAAAATAAAT
1 TTTTTATT-TATTTTTTAAATTTTAAAATACTTTTAAAAT-AAC
*
43553074 TTTTTATTT-TTGTTTTAATTTTTAAAATA
1 TTTTTATTTATT-TTTTAAATTTTAAAATA
43553103 AATTTTTTGG
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
40 2 0.03
41 33 0.55
42 2 0.03
43 21 0.35
44 2 0.03
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (42 bp):
TTTTTATTTATTTTTTAAATTTTAAAATACTTTTAAAATAAC
Found at i:43553058 original size:17 final size:17
Alignment explanation
Indices: 43553033--43553066 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
43553023 TAAAATACTT
* *
43553033 TTTTTAAATTTTTTTAA
1 TTTTAAAATATTTTTAA
43553050 TTTTAAAATATTTTTAA
1 TTTTAAAATATTTTTAA
43553067 AATAAATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTAAAATATTTTTAA
Found at i:43553073 original size:32 final size:33
Alignment explanation
Indices: 43553037--43553110 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 33
43553027 ATACTTTTTT
43553037 TAAATTTTTTTAATTTTAAAAT-ATTTTTAAAA
1 TAAATTTTTTTAATTTTAAAATAATTTTTAAAA
* ****
43553069 TAAA-TTTTTTATTTTTGTTTTAATTTTTAAAA
1 TAAATTTTTTTAATTTTAAAATAATTTTTAAAA
43553101 TAAATTTTTT
1 TAAATTTTTT
43553111 GGCATTTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
31 12 0.34
32 18 0.51
33 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.62
Consensus pattern (33 bp):
TAAATTTTTTTAATTTTAAAATAATTTTTAAAA
Found at i:43553123 original size:32 final size:32
Alignment explanation
Indices: 43553059--43553123 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
43553049 ATTTTAAAAT
** *
43553059 ATTTTTAAAATAAATTTTTTATTTTTGTTTTA
1 ATTTTTAAAATAAATTTTTTACATTTGATTTA
*
43553091 ATTTTTAAAATAAATTTTTTGGCATTT-ATTTA
1 ATTTTTAAAATAAATTTTTT-ACATTTGATTTA
43553123 A
1 A
43553124 AAAACGAGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 25 0.89
33 3 0.11
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.60
Consensus pattern (32 bp):
ATTTTTAAAATAAATTTTTTACATTTGATTTA
Found at i:43557978 original size:29 final size:30
Alignment explanation
Indices: 43557935--43557993 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
43557925 GAATTGGATC
*
43557935 AAATTAAAATTTCATATATAAAATTACACA
1 AAATTAAAATTTCATAAATAAAATTACACA
* *
43557965 AAATTAAAA-TTCATAAATACAATTGCACA
1 AAATTAAAATTTCATAAATAAAATTACACA
43557994 TTAAATCATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.31
Consensus pattern (30 bp):
AAATTAAAATTTCATAAATAAAATTACACA
Found at i:43562395 original size:24 final size:24
Alignment explanation
Indices: 43562368--43562416 Score: 57
Period size: 24 Copynumber: 2.0 Consensus size: 24
43562358 TACGTGCTTG
43562368 TTTTGA-AATTTATT-AAATAATATA
1 TTTTGATAATTT-TTAAAAT-ATATA
*
43562392 TTTTTATAATTTTTAAAATATATA
1 TTTTGATAATTTTTAAAATATATA
43562416 T
1 T
43562417 GTTCTAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
TTTTGATAATTTTTAAAATATATA
Found at i:43564508 original size:75 final size:75
Alignment explanation
Indices: 43564385--43564537 Score: 252
Period size: 75 Copynumber: 2.0 Consensus size: 75
43564375 TATTAATATA
* ** * *
43564385 TATACAAAATCCTAATAGAAGCAGTCAACATGTTGTGAACATGTTGTCAACCTGTTTCTCATGAC
1 TATACAAAATCCTAATAGAAGCAGTCAACACGTTGCAAACATGATGTCAACCTGTTTCCCATGAC
*
43564450 ATCAAAAAGT
66 ATCAAAAAAT
43564460 TATACAAAATCCTAATAGAAGCAGTCAACACGTTGCAAACATGATGTCAACCTGTTTCCCATGAC
1 TATACAAAATCCTAATAGAAGCAGTCAACACGTTGCAAACATGATGTCAACCTGTTTCCCATGAC
43564525 ATCAAAAAAT
66 ATCAAAAAAT
43564535 TAT
1 TAT
43564538 GGGACAACTG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.27
Consensus pattern (75 bp):
TATACAAAATCCTAATAGAAGCAGTCAACACGTTGCAAACATGATGTCAACCTGTTTCCCATGAC
ATCAAAAAAT
Found at i:43565882 original size:30 final size:30
Alignment explanation
Indices: 43565848--43565921 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 30
43565838 GACATGTGCT
* * * *
43565848 TGTGTCTAGCCCGTCTGGCTGACACGGCCA
1 TGTGTCCAACCCGTATGGCTCACACGGCCA
*
43565878 TGTGTCCAACCCGTATGGCTCACACGGGCA
1 TGTGTCCAACCCGTATGGCTCACACGGCCA
* *
43565908 TGTGGCCATCCCGT
1 TGTGTCCAACCCGT
43565922 GTGGAAATGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.15, C:0.34, G:0.28, T:0.23
Consensus pattern (30 bp):
TGTGTCCAACCCGTATGGCTCACACGGCCA
Found at i:43571618 original size:12 final size:12
Alignment explanation
Indices: 43571601--43571626 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
43571591 AAAGAGATGC
43571601 TAAAACTAAAAT
1 TAAAACTAAAAT
43571613 TAAAACTAAAAT
1 TAAAACTAAAAT
43571625 TA
1 TA
43571627 TTAAGTTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (12 bp):
TAAAACTAAAAT
Found at i:43574098 original size:50 final size:50
Alignment explanation
Indices: 43574039--43574136 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 50
43574029 CATCAATGAT
* *
43574039 TGTTTCATACATGCCTAATGTTCCAAATTATAATGAATAAGAAGTACTGG
1 TGTTTCATACAAGCCCAATGTTCCAAATTATAATGAATAAGAAGTACTGG
43574089 TGTTTCATACAAGCCCAATGTTCCAAATTATAATGAATAAGAAGTACT
1 TGTTTCATACAAGCCCAATGTTCCAAATTATAATGAATAAGAAGTACT
43574137 TGCCATGTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (50 bp):
TGTTTCATACAAGCCCAATGTTCCAAATTATAATGAATAAGAAGTACTGG
Found at i:43577954 original size:50 final size:49
Alignment explanation
Indices: 43577844--43578016 Score: 176
Period size: 50 Copynumber: 3.4 Consensus size: 49
43577834 GAAAGTGATG
*
43577844 GTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTT
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACC-G---GATAGGTT
* *
43577897 GT-A--TGTGTAGTACTATGTGCAGGCTACTATGCGTA-CGGATAGTTT
1 GTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGGTT
*
43577942 CGATCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGAT-GGTAAT
1 -G-TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGGT--T
* *
43577994 GGTCACATGTGTAGTACAATGTG
1 -GTCACGTGTGTAGTACTATGTG
43578017 AACTGGACAT
Statistics
Matches: 104, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
45 7 0.07
46 1 0.01
47 1 0.01
48 2 0.02
49 1 0.01
50 63 0.61
51 24 0.23
52 3 0.03
53 2 0.02
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.32
Consensus pattern (49 bp):
GTCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGGTT
Found at i:43578086 original size:45 final size:45
Alignment explanation
Indices: 43578021--43578111 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
43578011 AATGTGAACT
* *
43578021 GGACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACC
1 GGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
43578066 GGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
1 GGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
43578111 G
1 G
43578112 AGTATCTGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (45 bp):
GGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
Found at i:43578372 original size:23 final size:22
Alignment explanation
Indices: 43578342--43578385 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
43578332 AAAATGGTGG
*
43578342 ATATTG-AATTAGAGGCTGAATA
1 ATATTGAAATT-GAAGCTGAATA
43578364 ATATATGAAATTGAAGCTGAAT
1 ATAT-TGAAATTGAAGCTGAAT
43578386 GAGTCTATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 11 0.58
24 4 0.21
ACGTcount: A:0.43, C:0.05, G:0.20, T:0.32
Consensus pattern (22 bp):
ATATTGAAATTGAAGCTGAATA
Found at i:43580289 original size:21 final size:20
Alignment explanation
Indices: 43580259--43580297 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
43580249 ATTTATATTA
*
43580259 TTATTATATTTTTATAATGCG
1 TTATTATA-TTCTATAATGCG
*
43580280 TTATTTTATTCTATAATG
1 TTATTATATTCTATAATG
43580298 TATTCTCTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.28, C:0.05, G:0.08, T:0.59
Consensus pattern (20 bp):
TTATTATATTCTATAATGCG
Found at i:43582304 original size:27 final size:26
Alignment explanation
Indices: 43582273--43582450 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
43582263 TAAATTGTAC
43582273 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
43582300 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
43582326 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
43582354 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
43582382 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
43582409 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
43582436 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
43582451 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:43582389 original size:82 final size:81
Alignment explanation
Indices: 43582274--43582429 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
43582264 AAATTGTACA
* * *
43582274 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
43582338 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
43582355 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
43582420 TGCGAGTTGA
65 TGCGAATTGA
43582430 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:43582441 original size:82 final size:81
Alignment explanation
Indices: 43582270--43582450 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
43582260 GATTAAATTG
* * *
43582270 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
43582335 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
43582351 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
43582415 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
43582433 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
43582451 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:43582461 original size:27 final size:27
Alignment explanation
Indices: 43582355--43582461 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
43582345 TGACCATGCG
* * *
43582355 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
43582383 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
43582410 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
43582437 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
43582462 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:43591559 original size:29 final size:29
Alignment explanation
Indices: 43591499--43591557 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
43591489 GGAGGTAGTT
* *
43591499 AATAAAAATATCAAGAAGATTGTAGGGAA
1 AATAAAAACATCAAGAAGATCGTAGGGAA
*
43591528 AATAAGAACATCAAGAAGATCGT-GGGAA
1 AATAAAAACATCAAGAAGATCGTAGGGAA
43591556 AA
1 AA
43591558 ATGACTGAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 7 0.26
29 20 0.74
ACGTcount: A:0.54, C:0.07, G:0.22, T:0.17
Consensus pattern (29 bp):
AATAAAAACATCAAGAAGATCGTAGGGAA
Found at i:43593616 original size:87 final size:88
Alignment explanation
Indices: 43593407--43593817 Score: 481
Period size: 87 Copynumber: 4.7 Consensus size: 88
43593397 GACCAGCAGT
* * * * *
43593407 GGAATAGGTTGAAGATTGTAAGTCCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAA
1 GGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATTGTAT
* * *
43593472 GTCCTAGATCCCTGAACAGTAGT
66 GTCCTAGCTCCCTGAACAATAGC
43593495 GGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATTGTAA
1 GGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATTGT-A
*
43593560 T-TCCT-TCTCCCT-AACCAATAGC
65 TGTCCTAGCTCCCTGAA-CAATAGC
* * * *
43593582 GGAGTAGGTGGAAGATTGTAAGCCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAT
1 GGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATTGTAT
* **
43593647 GTTCTAGCTCCCTGAACAGCAG-
66 GTCCTAGCTCCCTGAACAATAGC
* ** * * * * *
43593669 TGAATAGGTGGAAGATTGTAAGTCCTAGATCCCTAAACAGTAGAGGAATAGGTTGAAGATTGTAT
1 GGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATTGTAT
* *
43593734 GTCCTATCTCCCTGACCAGA-AGC
66 GTCCTAGCTCCCTGAACA-ATAGC
* * * * *
43593757 GAAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACTAGTAGCGAAATAGGTAGAAGATT
1 GGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATT
43593818 CGAAGTAGAT
Statistics
Matches: 276, Mismatches: 40, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
86 4 0.01
87 145 0.53
88 124 0.45
89 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.26
Consensus pattern (88 bp):
GGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATTGTAT
GTCCTAGCTCCCTGAACAATAGC
Found at i:43593631 original size:131 final size:131
Alignment explanation
Indices: 43593386--43593817 Score: 553
Period size: 131 Copynumber: 3.3 Consensus size: 131
43593376 ATCACAAAGC
* * * *
43593386 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTAGCTCCCTGAACAGCAGT
1 CCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATTGTAAGTCCTAGCTCCCT-AACAGTAGA
** * *
43593451 GGAATAGGTGGAAGATTGTAAGTCCTAGATCCCTGAACAGTAGTGGAATAGGTGGAAGATTGTAA
65 GGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGAAGTGGAATAGGTGGAAGATTGTAA
43593516 GT
130 GT
* * * *
43593518 CCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATTGTAATTCCT-TCTCCCTAACCAATAGC
1 CCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATTGTAAGTCCTAGCTCCCTAA-CAGTAGA
* * * * *
43593582 GGAGTAGGTGGAAGATTGTAAGCCCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAT
65 GGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGAAGTGGAATAGGTGGAAGATTGTAA
43593647 GT
130 GT
* * * * *
43593649 TCTAGCTCCCTGAACAGCAG-TGAATAGGTGGAAGATTGTAAGTCCTAGATCCCTAAACAGTAGA
1 CCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATTGTAAGTCCTAGCTCCCT-AACAGTAGA
* * * *
43593713 GGAATAGGTTGAAGATTGTATGTCCTATCTCCCTGACCAGAAGCGAAATAGGTGGAAGATTGTAA
65 GGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGAAGTGGAATAGGTGGAAGATTGTAA
43593778 GT
130 GT
* * * *
43593780 CCTATCTCCCTGACTAGTAGCGAAATAGGTAGAAGATT
1 CCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATT
43593818 CGAAGTAGAT
Statistics
Matches: 255, Mismatches: 41, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
130 26 0.10
131 169 0.66
132 60 0.24
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (131 bp):
CCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATTGTAAGTCCTAGCTCCCTAACAGTAGAG
GAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGAAGTGGAATAGGTGGAAGATTGTAAG
T
Found at i:43593746 original size:175 final size:175
Alignment explanation
Indices: 43593386--43593817 Score: 573
Period size: 175 Copynumber: 2.5 Consensus size: 175
43593376 ATCACAAAGC
* * * * *
43593386 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTAGCTCCCTGAACAGCAGT
1 CCTATCTCCCTGACCA-AAGCGGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGCAGT
* *
43593451 GGAATAGGTGGAAGATTGTAAGTCCTAGATCCCTGAACAGTAGTGGAATAGGTGGAAGATTGTAA
65 GGAATAGGTAGAAGATTGTAAGTCCTAGATCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAA
** * * *
43593516 GTCCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATTGTAATT
130 GTCCTAGATCCCTAAACAGCAGAGGAATAGGTGGAAGATTGTAATT
* * *
43593562 CCT-TCTCCCTAACCAATAGCGGAGTAGGTGGAAGATTGTAAGCCCTATCTCCCTGACCAGCAGT
1 CCTATCTCCCTGACCAA-AGCGGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGCAGT
* * * *
43593626 GGAATAGGTTGAAGATTGTATGTTCTAGCTCCCTGAACAGCAGT-GAATAGGTGGAAGATTGTAA
65 GGAATAGGTAGAAGATTGTAAGTCCTAGATCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAA
* *
43593690 GTCCTAGATCCCTAAACAGTAGAGGAATAGGTTGAAGATTGT-ATGT
130 GTCCTAGATCCCTAAACAGCAGAGGAATAGGTGGAAGATTGTAAT-T
* * * *
43593736 CCTATCTCCCTGACCAGAAGCGAAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACTAGTAGC
1 CCTATCTCCCTGACCA-AAGCGGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGCAGT
*
43593801 GAAATAGGTAGAAGATT
65 GGAATAGGTAGAAGATT
43593818 CGAAGTAGAT
Statistics
Matches: 223, Mismatches: 29, Indels: 9
0.85 0.11 0.03
Matches are distributed among these distances:
173 2 0.01
174 59 0.26
175 158 0.71
176 4 0.02
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (175 bp):
CCTATCTCCCTGACCAAAGCGGAATAGGTGGAAGATTGTAAGTCCTATCTCCCTGACCAGCAGTG
GAATAGGTAGAAGATTGTAAGTCCTAGATCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAG
TCCTAGATCCCTAAACAGCAGAGGAATAGGTGGAAGATTGTAATT
Found at i:43593793 original size:44 final size:44
Alignment explanation
Indices: 43593386--43593817 Score: 526
Period size: 44 Copynumber: 9.9 Consensus size: 44
43593376 ATCACAAAGC
*
43593386 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGTAAGT
* *
43593430 CCTAGCTCCCTGAACAGCAGTGGAATAGGTGGAAGATTGTAAGT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGTAAGT
** * *
43593474 CCTAGATCCCTGAACAGTAGTGGAATAGGTGGAAGATTGTAAGT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGTAAGT
* *
43593518 CCTATCTCCCTGACCAGCAGCGGAATAGGTGGAAGATTGTAATT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGTAAGT
* ** * * *
43593562 CCT-TCTCCCTAACCAATAGCGGAGTAGGTGGAAGATTGTAAGC
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGTAAGT
* *
43593605 CCTATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTATGT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGTAAGT
* * *
43593649 TCTAGCTCCCTGAACAGCAGT-GAATAGGTGGAAGATTGTAAGT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGTAAGT
** * * * * * *
43593692 CCTAGATCCCTAAACAGTAGAGGAATAGGTTGAAGATTGTATGT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGTAAGT
* * *
43593736 CCTATCTCCCTGACCAGAAGCGAAATAGGTGGAAGATTGTAAGT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGTAAGT
* * * * *
43593780 CCTATCTCCCTGACTAGTAGCGAAATAGGTAGAAGATT
1 CCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATT
43593818 CGAAGTAGAT
Statistics
Matches: 337, Mismatches: 49, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
43 73 0.22
44 264 0.78
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (44 bp):
CCTATCTCCCTGACCAGCAGTGGAATAGGTGGAAGATTGTAAGT
Found at i:43595196 original size:54 final size:54
Alignment explanation
Indices: 43595114--43595221 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
43595104 AAAACGCAGC
43595114 GTTTTGGAGAAGCGGGATATTTCCCAATCAGCCCCCATGTAATTCGCGCATTGT
1 GTTTTGGAGAAGCGGGATATTTCCCAATCAGCCCCCATGTAATTCGCGCATTGT
*
43595168 GTTTTGGAGAAGCGGGATATTTCCCAATCCGCCCCCATGTAATTCGCGCATTGT
1 GTTTTGGAGAAGCGGGATATTTCCCAATCAGCCCCCATGTAATTCGCGCATTGT
43595222 AGCATGGTCC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.30
Consensus pattern (54 bp):
GTTTTGGAGAAGCGGGATATTTCCCAATCAGCCCCCATGTAATTCGCGCATTGT
Found at i:43595450 original size:21 final size:20
Alignment explanation
Indices: 43595420--43595458 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
43595410 ATTTATATTA
*
43595420 TTATTATATTTTTATAATGCG
1 TTATTATA-TTCTATAATGCG
*
43595441 TTATTTTATTCTATAATG
1 TTATTATATTCTATAATG
43595459 TATTCTCTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.28, C:0.05, G:0.08, T:0.59
Consensus pattern (20 bp):
TTATTATATTCTATAATGCG
Found at i:43606761 original size:130 final size:130
Alignment explanation
Indices: 43606528--43607308 Score: 1355
Period size: 130 Copynumber: 6.0 Consensus size: 130
43606518 TAACTTGAAA
* *
43606528 AACTCGATTAACAAACTTGAATAAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
* *
43606593 AAAATGATTAAAAAAAATTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
66 AAAATGATTAAAAAAAATTTAAAATCTGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
43606658 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
* *
43606723 AAAATGATTAAAAAAAATTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
66 AAAATGATTAAAAAAAATTTAAAATCTGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
43606788 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
* *
43606853 AAAATGATTAAAAAAAGTTTAAAAATCTGAATTTACCCTAAACAATTCATAATAGCATAACTTCA
66 AAAATGATTAAAAAAAATTT-AAAATCTGAATTTACCCTAAACAATTCATAATACCATAACTTCA
43606918 T
130 T
* ** *
43606919 AACTCGATTAACAAACTTGAATAAGCTAAACCCAAATTGACTTGAGCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
* * *
43606984 AAAATGATTAAAAAAATTTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
66 AAAATGATTAAAAAAAATTTAAAATCTGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
43607049 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
* *
43607114 AAAATGATTAAAAAAAGTTTAAAATCTGAATTTACCCTAAACAATTCATAATACTATAACTTCAT
66 AAAATGATTAAAAAAAATTTAAAATCTGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
* *
43607179 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAGTTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
* * *
43607244 AAAATGATTAAAAACAATTTAAAATTTGAATTTACCGTAAACAATTCATAATACCATAACTTCAT
66 AAAATGATTAAAAAAAATTTAAAATCTGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
43607309 CATTAAGTGT
Statistics
Matches: 621, Mismatches: 29, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
130 499 0.80
131 122 0.20
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.28
Consensus pattern (130 bp):
AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
AAAATGATTAAAAAAAATTTAAAATCTGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
Found at i:43606991 original size:261 final size:259
Alignment explanation
Indices: 43606528--43607308 Score: 1382
Period size: 261 Copynumber: 3.0 Consensus size: 259
43606518 TAACTTGAAA
* *
43606528 AACTCGATTAACAAACTTGAATAAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
* * *
43606593 AAAATGATTAAAAAAAATTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
66 AAAATGATTAAAAAAAGTTTAAAATCTGAATTTACCCTAAACAATTCATAATA-CATAACTTCAT
*
43606658 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
130 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTC
43606723 AAAATGATTAAAAAAAATTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
195 AAAATGATTAAAAAAAATTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
43606788 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
43606853 AAAATGATTAAAAAAAGTTTAAAAATCTGAATTTACCCTAAACAATTCATAATAGCATAACTTCA
66 AAAATGATTAAAAAAAGTTT-AAAATCTGAATTTACCCTAAACAATTCATAATA-CATAACTTCA
* * *
43606918 TAACTCGATTAACAAACTTGAATAAGCTAAACCCAAATTGACTTGAGCAAAAATAACTTAAAATT
129 TAACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATT
*
43606983 CAAAATGATTAAAAAAATTTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCA
194 CAAAATGATTAAAAAAAATTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCA
43607048 T
259 T
43607049 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
43607114 AAAATGATTAAAAAAAGTTTAAAATCTGAATTTACCCTAAACAATTCATAATACTATAACTTCAT
66 AAAATGATTAAAAAAAGTTTAAAATCTGAATTTACCCTAAACAATTCATAATAC-ATAACTTCAT
*
43607179 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAGTTC
130 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTC
* * * * *
43607244 AAAATGATTAAAAACAATTTAAAATTTGAATTTACCGTAAACAATTCATAATACCATAACTTCAT
195 AAAATGATTAAAAAAAATTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
43607309 CATTAAGTGT
Statistics
Matches: 498, Mismatches: 21, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
259 1 0.00
260 245 0.49
261 252 0.51
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.28
Consensus pattern (259 bp):
AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
AAAATGATTAAAAAAAGTTTAAAATCTGAATTTACCCTAAACAATTCATAATACATAACTTCATA
ACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTCA
AAATGATTAAAAAAAATTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
Found at i:43607249 original size:391 final size:390
Alignment explanation
Indices: 43606528--43607308 Score: 1429
Period size: 391 Copynumber: 2.0 Consensus size: 390
43606518 TAACTTGAAA
43606528 AACTCGATTAACAAACTTGAATAAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATAAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTC
43606593 AAAATGATTAAAAAAAATTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
66 AAAATGATTAAAAAAAATTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
43606658 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
131 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
* *
43606723 AAAATGATTAAAAAAAATTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
196 AAAATGATTAAAAAAAATTTAAAATCTGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
43606788 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
261 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
*
43606853 AAAATGATTAAAAA-AAGTTTAAAAATCTGAATTTACCCTAAACAATTCATAATAGCATAACTTC
326 AAAATGATTAAAAACAA-TTT-AAAATCTGAATTTACCCTAAACAATTCATAATACCATAACTTC
43606917 AT
389 AT
* *
43606919 AACTCGATTAACAAACTTGAATAAGCTAAACCCAAATTGACTTGAGCAAAAATAACTTAAAATTC
1 AACTCGATTAACAAACTTGAATAAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTC
*
43606984 AAAATGATTAAAAAAATTTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
66 AAAATGATTAAAAAAAATTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
43607049 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
131 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
* *
43607114 AAAATGATTAAAAAAAGTTTAAAATCTGAATTTACCCTAAACAATTCATAATACTATAACTTCAT
196 AAAATGATTAAAAAAAATTTAAAATCTGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
* *
43607179 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAGTTC
261 AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
* *
43607244 AAAATGATTAAAAACAATTTAAAATTTGAATTTACCGTAAACAATTCATAATACCATAACTTCAT
326 AAAATGATTAAAAACAATTTAAAATCTGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
43607309 CATTAAGTGT
Statistics
Matches: 377, Mismatches: 12, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
390 42 0.11
391 333 0.88
392 2 0.01
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.28
Consensus pattern (390 bp):
AACTCGATTAACAAACTTGAATAAGCTAAACCCAAATTGACTCGACCAAAAATAACTTAAAATTC
AAAATGATTAAAAAAAATTTTAAATCTGAATTTTCCCTAAACAATTCATAATACCATAACTTCAT
AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
AAAATGATTAAAAAAAATTTAAAATCTGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
AACTCGATTAACAAACTTGAATGAGCTAAACCCAAATTGACTCAACCAAAAATAACTTAAAATTC
AAAATGATTAAAAACAATTTAAAATCTGAATTTACCCTAAACAATTCATAATACCATAACTTCAT
Done.