Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 139 of 153
Found at i:43608456 original size:126 final size:125
Alignment explanation
Indices: 43608059--43608551 Score: 650
Period size: 126 Copynumber: 3.9 Consensus size: 125
43608049 AGGCATACTA
* * *
43608059 TTGGACAAAGCCAACTCTTATTCAAGTGTTGCCTTAGGCATGCATGTCCCAACCCTTATACAAAG
1 TTGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATA-AAAG
* * * * *
43608124 AGTTGACCAAAGCATATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTTGGCATAGTG
65 AGTTGGCCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGTCATAGTG
* *
43608185 TTGGACAAAGCCGACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATACAA-A
1 TTGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATAAAAGA
* * *
43608249 GTTGGCCAAAACGTATGTCGACAAGTCTATCCCAACACTTAAGAAAGTGTCAGT-ATAGTG
66 GTTGGCCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTC-GTCATAGTG
* * * * * *
43608309 TTGGACAAAGCCGACTCTTATTTAAGTGTTACCTTAAGCAAGCATATCCTAACCCTTATAGAAAG
1 TTGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATA-AAAG
* * * *
43608374 AGTTGGCCAAAGCGTATGTCGGCAAGTGTATCCCAACACGTAGGAAAATGTCGTCTTAG-G
65 AGTTGGCCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGTCATAGTG
* * *
43608434 ACTGGACAAAGCTAACTCTTATTTAAGCGTTGCCTTAGGCATGCATACCCCAACCCTTATATAAA
1 -TTGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATA-AAA
* * * *
43608499 GTGTTGGCCAAAGCGTATGTTGGCAAGTTTATCCGAACACTTAGGAAAGTGTC
64 GAGTTGGCCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTC
43608552 ACCCCAAAAG
Statistics
Matches: 320, Mismatches: 42, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
124 106 0.33
125 8 0.03
126 206 0.64
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (125 bp):
TTGGACAAAGCCAACTCTTATTTAAGCGTTGCCTTAGGCATGCATATCCCAACCCTTATAAAAGA
GTTGGCCAAAGCGTATGTCGGCAAGTCTATCCCAACACTTAGGAAAGTGTCGTCATAGTG
Found at i:43608716 original size:148 final size:140
Alignment explanation
Indices: 43608424--43608718 Score: 385
Period size: 148 Copynumber: 2.0 Consensus size: 140
43608414 TAGGAAAATG
* * *
43608424 TCGTCTTAGGACTGGACAAAGCTAACTCTTATTTAAGCGTTGCCTTAGGCATGCATACCCCAACC
1 TCGTCTTAGGACTAGACAAAGCTAACTCTTATTTAAACATTGCCTTAGGCATGCATACCCCAACC
* * *
43608489 CTTATATAAAGTGTTGGCCAAAGCGTATGTTGGCAAGTTTATCCGAACACTTAGGAAAGTGTCAC
66 CTTATAAAAAGTGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCAC
*
43608554 CCCAAAAGTG
131 CCCAAAAGTA
* * *
43608564 TCGTCTTAGGACTAGACAAAG-TCAATTCTTATTTAAACATTGTCTTAGGCATGCATATCCCAAC
1 TCGTCTTAGGACTAGACAAAGCT-AACTCTTATTTAAACATTGCCTTAGGCATGCATACCCCAAC
* *
43608628 CTTTATACAAAGAGTTGGAGAGTTGGCCAAAGTGTATGTTGGCAAGTCTATCCCAACACTTAGGA
65 CCTTATA-AAA-AG-T-----GTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGA
*
43608693 AAGTGTCGCCCCAAAAGTA
122 AAGTGTCACCCCAAAAGTA
43608712 TCGTCTT
1 TCGTCTT
43608719 GGGAATGTTT
Statistics
Matches: 133, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
139 1 0.01
140 62 0.47
141 2 0.02
142 2 0.02
143 1 0.01
148 65 0.49
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (140 bp):
TCGTCTTAGGACTAGACAAAGCTAACTCTTATTTAAACATTGCCTTAGGCATGCATACCCCAACC
CTTATAAAAAGTGTTGGCCAAAGCGTATGTTGGCAAGTCTATCCCAACACTTAGGAAAGTGTCAC
CCCAAAAGTA
Found at i:43610611 original size:18 final size:18
Alignment explanation
Indices: 43610576--43610612 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
43610566 TGAATTTTCA
*
43610576 AATTCGAATAACTCGAAT
1 AATTCGAATAAATCGAAT
*
43610594 AATTCGAATAAATTGAAT
1 AATTCGAATAAATCGAAT
43610612 A
1 A
43610613 TCAAACTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.30
Consensus pattern (18 bp):
AATTCGAATAAATCGAAT
Found at i:43610939 original size:72 final size:76
Alignment explanation
Indices: 43610861--43611005 Score: 199
Period size: 72 Copynumber: 2.0 Consensus size: 76
43610851 TCACTTTCCC
* * * *
43610861 CCTAAAACTTTTACTCCTTTCTCATCCCACC-CCCCATTTACCCCAAA-CC-CACCCC-CCAATT
1 CCTAAAACTTTTACTCCCTTCCCATCCCACCTCCCAATCTACCCCAAACCCTCACCCCTCCAATT
43610922 TTTTTTAAAAA
66 TTTTTTAAAAA
* * *
43610933 CCTAAAACTTTTATTCCCTTCCCATCTCACCTCCCAATCTACCCCAAACCCTCCCCCCTCCAATT
1 CCTAAAACTTTTACTCCCTTCCCATCCCACCTCCCAATCTACCCCAAACCCTCACCCCTCCAATT
43610998 TTTTTTAA
66 TTTTTTAA
43611006 TATTTTTCCT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
72 27 0.44
73 14 0.23
74 2 0.03
75 5 0.08
76 14 0.23
ACGTcount: A:0.26, C:0.43, G:0.00, T:0.32
Consensus pattern (76 bp):
CCTAAAACTTTTACTCCCTTCCCATCCCACCTCCCAATCTACCCCAAACCCTCACCCCTCCAATT
TTTTTTAAAAA
Found at i:43615476 original size:10 final size:10
Alignment explanation
Indices: 43615450--43615485 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
43615440 TTGTCCGGAT
43615450 TAATTTTAAA
1 TAATTTTAAA
*
43615460 -CATTTTAAA
1 TAATTTTAAA
43615469 TAATTTTAAA
1 TAATTTTAAA
43615479 TAATTTT
1 TAATTTT
43615486 TTTAAAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (10 bp):
TAATTTTAAA
Found at i:43620078 original size:16 final size:15
Alignment explanation
Indices: 43620053--43620090 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
43620043 ATAAATTTCA
43620053 TATTATTATTGTTAT
1 TATTATTATTGTTAT
43620068 TATTAATTATTGTTAT
1 TATT-ATTATTGTTAT
*
43620084 TGTTATT
1 TATTATT
43620091 TGCTCATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (15 bp):
TATTATTATTGTTAT
Found at i:43620341 original size:13 final size:13
Alignment explanation
Indices: 43620311--43620335 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
43620301 TTCTTCATAT
43620311 TTTTAAATATGTA
1 TTTTAAATATGTA
43620324 TTTTAAATATGT
1 TTTTAAATATGT
43620336 TCTTTATATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
TTTTAAATATGTA
Found at i:43632604 original size:46 final size:46
Alignment explanation
Indices: 43632544--43632721 Score: 270
Period size: 46 Copynumber: 3.9 Consensus size: 46
43632534 GACTAGAAGC
* * *
43632544 AGCAGATCTGGTCTTCATGTATTTGGCAGCAGAGTAGATCGAAAAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGAT
** *
43632590 AATAGATCTTGTCTTCCTGTACTTGGCAGC-GAAGTAGATC-AGAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCAG-AGTAGATCGA-AGAT
43632636 AGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGAT
43632682 AGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATC
1 AGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATC
43632722 TGGTAGCGAA
Statistics
Matches: 119, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
45 2 0.02
46 115 0.97
47 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (46 bp):
AGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCGAAGAT
Found at i:43638267 original size:34 final size:34
Alignment explanation
Indices: 43638221--43638288 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
43638211 ATAGATAATC
*
43638221 TCAGTTTGGGCCTAAGCCCATTTCAGTATCAGTA
1 TCAGTTTAGGCCTAAGCCCATTTCAGTATCAGTA
43638255 TCAGTTTAGGCCTAAGCCCATTTCAGTATCAGTA
1 TCAGTTTAGGCCTAAGCCCATTTCAGTATCAGTA
43638289 AGCATTAGGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (34 bp):
TCAGTTTAGGCCTAAGCCCATTTCAGTATCAGTA
Found at i:43638307 original size:34 final size:32
Alignment explanation
Indices: 43638229--43638322 Score: 109
Period size: 34 Copynumber: 2.8 Consensus size: 32
43638219 TCTCAGTTTG
*
43638229 GGCCTAAGCCCATTTCAGTATCAGTATCAGTTTA
1 GGCCTAAGCCCATTTCAGTATCAGTA--AGATTA
43638263 GGCCTAAGCCCATTTCAGTATCAGTAAGCATTA
1 GGCCTAAGCCCATTTCAGTATCAGTAAG-ATTA
* **
43638296 GGACCTTAGCCCATCACAGTA-CAGTAA
1 GG-CCTAAGCCCATTTCAGTATCAGTAA
43638323 CAGTGACGGT
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
32 2 0.04
33 11 0.20
34 41 0.76
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (32 bp):
GGCCTAAGCCCATTTCAGTATCAGTAAGATTA
Found at i:43645423 original size:34 final size:34
Alignment explanation
Indices: 43645361--43645428 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
43645351 ACAGATAATC
* *
43645361 TCAGTTTAGGCCTAAGCCTTTTTCAGTATCAGTA
1 TCAGTTTAAGCCTAAGCCATTTTCAGTATCAGTA
*
43645395 TCAGTTTAAGCCTAAGCCCATTTT-AGTATTAGTA
1 TCAGTTTAAGCCTAAG-CCATTTTCAGTATCAGTA
43645429 AGTATTAGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 24 0.80
35 6 0.20
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (34 bp):
TCAGTTTAAGCCTAAGCCATTTTCAGTATCAGTA
Found at i:43649953 original size:19 final size:19
Alignment explanation
Indices: 43649931--43649970 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
43649921 AAAGTATCAT
*
43649931 ATTAATTTAATTTTATTTG
1 ATTAATTTAATTTTACTTG
43649950 ATTAATTTAATTTTACTTG
1 ATTAATTTAATTTTACTTG
43649969 AT
1 AT
43649971 CAAAATTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTAATTTAATTTTACTTG
Found at i:43651856 original size:26 final size:26
Alignment explanation
Indices: 43651826--43651887 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
43651816 ACCCACAACT
* * *
43651826 CGTGTGAGCAGGCCCATTTCATAGCT
1 CGTGTGAGCAGACCCATTTCACAGCA
* *
43651852 TGTGTGAGTAGACCCATTTCACAGCA
1 CGTGTGAGCAGACCCATTTCACAGCA
43651878 CGTGTGAGCA
1 CGTGTGAGCA
43651888 ACGATGTAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (26 bp):
CGTGTGAGCAGACCCATTTCACAGCA
Found at i:43653485 original size:11 final size:11
Alignment explanation
Indices: 43653469--43653493 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
43653459 TTTGGTCTTA
43653469 TTATATATGTT
1 TTATATATGTT
43653480 TTATATATGTT
1 TTATATATGTT
43653491 TTA
1 TTA
43653494 AGGCTTGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (11 bp):
TTATATATGTT
Found at i:43654890 original size:16 final size:16
Alignment explanation
Indices: 43654869--43654899 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
43654859 CTATGCATGC
*
43654869 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
43654885 AAAATACAAAAGACA
1 AAAATACAAAAGACA
43654900 TAACAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:43659084 original size:28 final size:28
Alignment explanation
Indices: 43659040--43659094 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
43659030 AAATATAAAA
43659040 CTCACGATGTTGAGATTATGATGATCTT
1 CTCACGATGTTGAGATTATGATGATCTT
*
43659068 CTCACGATGTTGGGATTATGATGATCT
1 CTCACGATGTTGAGATTATGATGATCT
43659095 CAGGTCTGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.38
Consensus pattern (28 bp):
CTCACGATGTTGAGATTATGATGATCTT
Found at i:43667310 original size:27 final size:26
Alignment explanation
Indices: 43667280--43667463 Score: 163
Period size: 27 Copynumber: 6.8 Consensus size: 26
43667270 TTAATGATTA
*
43667280 AAATACCCTCGACGGGTAAAATTATCG
1 AAATACCCTCGATGGGTAAAATTA-CG
* * *
43667307 AAATACCCTTGATAGGTAAAATTACCA
1 AAATACCCTCGATGGGTAAAATTA-CG
** ** *
43667334 AAATACATTTAATGGGTAAAATGACCG
1 AAATACCCTCGATGGGTAAAATTA-CG
*
43667361 AAATACCCTCGATGGGTAAAATTACTA
1 AAATACCCTCGATGGGTAAAATTAC-G
* * * *
43667388 AAATACCCTCAATGAGTGAAATGACTG
1 AAATACCCTCGATGGGTAAAATTAC-G
*
43667415 AAATACCCTCGATGGGTAAAATAACTG
1 AAATACCCTCGATGGGTAAAATTAC-G
43667442 AAATACCCTCG-TCGGGTAAAAT
1 AAATACCCTCGAT-GGGTAAAAT
43667464 GATCGTAATG
Statistics
Matches: 129, Mismatches: 26, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.02
27 127 0.98
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (26 bp):
AAATACCCTCGATGGGTAAAATTACG
Found at i:43667410 original size:54 final size:54
Alignment explanation
Indices: 43667278--43667465 Score: 216
Period size: 54 Copynumber: 3.5 Consensus size: 54
43667268 GTTTAATGAT
* * * * * *
43667278 TAAAATACCCTCGACGGGTAAAATTATCGAAATACCCTTGATAGGTAAAATTAC
1 TAAAATACCCTCAATGGGTAAAATGACCGAAATACCCTCGATGGGTAAAATTAC
* ** *
43667332 CAAAATACATTTAATGGGTAAAATGACCGAAATACCCTCGATGGGTAAAATTAC
1 TAAAATACCCTCAATGGGTAAAATGACCGAAATACCCTCGATGGGTAAAATTAC
* * * *
43667386 TAAAATACCCTCAATGAGTGAAATGACTGAAATACCCTCGATGGGTAAAATAAC
1 TAAAATACCCTCAATGGGTAAAATGACCGAAATACCCTCGATGGGTAAAATTAC
* *
43667440 TGAAATACCCTC-GTCGGGTAAAATGA
1 TAAAATACCCTCAAT-GGGTAAAATGA
43667466 TCGTAATGCC
Statistics
Matches: 111, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
53 1 0.01
54 110 0.99
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (54 bp):
TAAAATACCCTCAATGGGTAAAATGACCGAAATACCCTCGATGGGTAAAATTAC
Found at i:43667419 original size:81 final size:81
Alignment explanation
Indices: 43667280--43667495 Score: 197
Period size: 81 Copynumber: 2.7 Consensus size: 81
43667270 TTAATGATTA
* * ** * * *
43667280 AAATACCCTCGACGGGTAAAATTATCGAAATACCCTTGATAGGTAAAATTACCAAAATACATTTA
1 AAATACCCTCGATGGGTAAAATTATCAAAATACCCTCAATAGGTAAAATGACCAAAATACACTCA
*
43667345 ATGGGTAAAATGACCG
66 ATGGGTAAAATAACCG
* ** *
43667361 AAATACCCTCGATGGGTAAAATTA-CTAAAATACCCTCAAT-GAGTGAAATGACTGAAATACCCT
1 AAATACCCTCGATGGGTAAAATTATC-AAAATACCCTCAATAG-GTAAAATGACCAAAATACACT
* *
43667424 CGATGGGTAAAATAACTG
64 CAATGGGTAAAATAACCG
* ** * *
43667442 AAATACCCTCG-TCGGGTAAAATGATCGTAATGCCC-CAATAAGGCAAAATGACCA
1 AAATACCCTCGAT-GGGTAAAATTATCAAAATACCCTCAAT-AGGTAAAATGACCA
43667496 TCATACCCCT
Statistics
Matches: 107, Mismatches: 22, Indels: 12
0.76 0.16 0.09
Matches are distributed among these distances:
80 7 0.07
81 98 0.92
82 2 0.02
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.23
Consensus pattern (81 bp):
AAATACCCTCGATGGGTAAAATTATCAAAATACCCTCAATAGGTAAAATGACCAAAATACACTCA
ATGGGTAAAATAACCG
Found at i:43667502 original size:81 final size:81
Alignment explanation
Indices: 43667416--43667639 Score: 242
Period size: 81 Copynumber: 2.8 Consensus size: 81
43667406 AAATGACTGA
* * *
43667416 AATACCCTCGAT-GGGTAAAATAACTGAAATA-CCCTCGTCGGGTAAAATGATCGTAATGCCCCA
1 AATACCC-CGATAGGGTAAAATGACTGAAATACCCCT-GTAGGGTAAAATGACCGTAATGCCCCA
43667479 ATAAGG-CAAAATGACCAT
64 AT-AGGACAAAATGACCAT
* * ** * * *
43667497 CATACCCCTG-TAGGTTAAAATGACCAAAAAACCCCTATAGGGTAAAATGACCGTAATGCCCCTA
1 AATACCCC-GATAGGGTAAAATGACTGAAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCAA
* *
43667561 TAGGATAAAATGACCGT
65 TAGGACAAAATGACCAT
* *
43667578 AATACACCC-ATAGGGTTAAATGACTGAAATACCCCTGTAAGGTAAAATGACCGTAATGCCCC
1 AATAC-CCCGATAGGGTAAAATGACTGAAATACCCCTGTAGGGTAAAATGACCGTAATGCCCC
43667640 TAGAGGGTAA
Statistics
Matches: 117, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
80 5 0.04
81 105 0.90
82 7 0.06
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (81 bp):
AATACCCCGATAGGGTAAAATGACTGAAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCAAT
AGGACAAAATGACCAT
Found at i:43667516 original size:27 final size:27
Alignment explanation
Indices: 43667486--43667654 Score: 130
Period size: 27 Copynumber: 6.3 Consensus size: 27
43667476 CCAATAAGGC
* * *
43667486 AAAATGACCATCATACCCCTGTAGGTT
1 AAAATGACCATAATACCCCTATAGGAT
* * *
43667513 AAAATGACCAAAAAACCCCTATAGGGT
1 AAAATGACCATAATACCCCTATAGGAT
* *
43667540 AAAATGACCGTAATGCCCCTATAGGAT
1 AAAATGACCATAATACCCCTATAGGAT
* *
43667567 AAAATGACCGTAATACACCC-ATAGGGT
1 AAAATGACCATAATAC-CCCTATAGGAT
* * *
43667594 TAAATGACTGA-AATACCCCTGTAAGG-T
1 AAAATGAC-CATAATACCCCTAT-AGGAT
* * * *
43667621 AAAATGACCGTAATGCCCCTAGAGGGT
1 AAAATGACCATAATACCCCTATAGGAT
43667648 -AAATGAC
1 AAAATGAC
43667655 TATTTTTCCC
Statistics
Matches: 114, Mismatches: 22, Indels: 13
0.77 0.15 0.09
Matches are distributed among these distances:
26 13 0.11
27 95 0.83
28 6 0.05
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (27 bp):
AAAATGACCATAATACCCCTATAGGAT
Found at i:43667516 original size:54 final size:52
Alignment explanation
Indices: 43667456--43667654 Score: 177
Period size: 54 Copynumber: 3.7 Consensus size: 52
43667446 ACCCTCGTCG
* * * * *
43667456 GGTAAAATGATCGTAATGCCCCAATAAGGCAAAATGACCATCATACCCCTGTA
1 GGTAAAATGACCGTAATACCCC-ATAGGGTAAAATGACCATAATACCCCTGTA
** * * * *
43667509 GGTTAAAATGACCAAAAAACCCCTATAGGGTAAAATGACCGTAATGCCCCTATA
1 GG-TAAAATGACCGTAATACCCC-ATAGGGTAAAATGACCATAATACCCCTGTA
* *
43667563 GGATAAAATGACCGTAATACACCCATAGGGTTAAATGACTGA-AATACCCCTGTAA
1 GG-TAAAATGACCGTAATAC-CCCATAGGGTAAAATGAC-CATAATACCCCTGT-A
* *
43667618 GGTAAAATGACCGTAATGCCCCTAGAGGGT-AAATGAC
1 GGTAAAATGACCGTAATACCCC-ATAGGGTAAAATGAC
43667655 TATTTTTCCC
Statistics
Matches: 118, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
53 12 0.10
54 100 0.85
55 6 0.05
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.21
Consensus pattern (52 bp):
GGTAAAATGACCGTAATACCCCATAGGGTAAAATGACCATAATACCCCTGTA
Found at i:43667769 original size:11 final size:11
Alignment explanation
Indices: 43667729--43667771 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
43667719 TTTAAATTAC
43667729 TGATTTGTCTG
1 TGATTTGTCTG
* *
43667740 TGATTAGTATG
1 TGATTTGTCTG
43667751 ACTGATTTGTCTG
1 --TGATTTGTCTG
43667764 TGATTTGT
1 TGATTTGT
43667772 ATGACTGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 17 0.65
13 9 0.35
ACGTcount: A:0.16, C:0.07, G:0.26, T:0.51
Consensus pattern (11 bp):
TGATTTGTCTG
Found at i:43667773 original size:24 final size:24
Alignment explanation
Indices: 43667673--43667781 Score: 130
Period size: 24 Copynumber: 4.5 Consensus size: 24
43667663 CCCTCAAGTG
* * *
43667673 TAAATGATTAATTTGTCTGTGATG
1 TAAATGACTGATTTGTCTGTGATT
*
43667697 TAAATGACTAATTTGTCTGTGATT
1 TAAATGACTGATTTGTCTGTGATT
*
43667721 TAAATTACTGATTTGTCTGTGA-T
1 TAAATGACTGATTTGTCTGTGATT
*
43667744 TAGTATGACTGATTTGTCTGTGATT
1 TA-AATGACTGATTTGTCTGTGATT
**
43667769 TGTATGACTGATT
1 TAAATGACTGATT
43667782 CTGAGCATGA
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
23 3 0.04
24 71 0.93
25 2 0.03
ACGTcount: A:0.26, C:0.07, G:0.20, T:0.47
Consensus pattern (24 bp):
TAAATGACTGATTTGTCTGTGATT
Found at i:43667906 original size:27 final size:26
Alignment explanation
Indices: 43667850--43667915 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
43667840 AGAAGTACCG
*
43667850 TACTGGTGGCTCTGCCACAATCACTGT
1 TACTGGTGGCT-TGCCACAATCACTAT
43667877 TACTGGTGGCTTGGCCACATAT-ACTAT
1 TACTGGTGGCTT-GCCACA-ATCACTAT
* *
43667904 TACGGGTAGCTT
1 TACTGGTGGCTT
43667916 TGTGGCGATG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 1 0.03
27 31 0.91
28 2 0.06
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (26 bp):
TACTGGTGGCTTGCCACAATCACTAT
Found at i:43667999 original size:32 final size:32
Alignment explanation
Indices: 43667953--43668091 Score: 181
Period size: 32 Copynumber: 4.4 Consensus size: 32
43667943 GTTGCAATGC
* * *
43667953 TACTGATAGTTTTGTGCCGGTCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
43667985 TACTGATTGCTTTGTGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * *
43668017 TACTGATGGCTTTGTGCCGATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* *
43668049 TACTGATGGCTTTGTGCCAATCATATTACTG-
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
43668080 TACTTATGGCTT
1 TACTGATGGCTT
43668092 GTAGCCATTT
Statistics
Matches: 97, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 11 0.11
32 86 0.89
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.40
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACCGT
Found at i:43668279 original size:21 final size:21
Alignment explanation
Indices: 43668238--43668279 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
43668228 TATCCCCACA
*
43668238 TGGTGTATTGGTTGATATGGG
1 TGGTGTATTGGTAGATATGGG
*
43668259 TGGTGTGTTGGCTAGAT-TGGG
1 TGGTGTATTGG-TAGATATGGG
43668280 ATGGGTTGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.12, C:0.02, G:0.45, T:0.40
Consensus pattern (21 bp):
TGGTGTATTGGTAGATATGGG
Found at i:43669095 original size:12 final size:12
Alignment explanation
Indices: 43669078--43669111 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
43669068 AGTTACATGA
43669078 CCTACCACACGG
1 CCTACCACACGG
*
43669090 CCTACCACAAGG
1 CCTACCACACGG
*
43669102 CCTAGCACAC
1 CCTACCACAC
43669112 AGACATGTGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.29, C:0.47, G:0.15, T:0.09
Consensus pattern (12 bp):
CCTACCACACGG
Found at i:43671331 original size:16 final size:16
Alignment explanation
Indices: 43671310--43671344 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
43671300 GTAATGATAA
43671310 AAAATAAAAAGAAAAG
1 AAAATAAAAAGAAAAG
*
43671326 AAAATATAAAGAAAAG
1 AAAATAAAAAGAAAAG
43671342 AAA
1 AAA
43671345 CTTAAGTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (16 bp):
AAAATAAAAAGAAAAG
Found at i:43673794 original size:20 final size:23
Alignment explanation
Indices: 43673769--43673831 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 23
43673759 TTTGTCTTCC
43673769 TCCCTTCTT-TTC-TTCTTT-TT
1 TCCCTTCTTATTCTTTCTTTCTT
43673789 TCCCTTCTTATTCTTTCTTTCTT
1 TCCCTTCTTATTCTTTCTTTCTT
*
43673812 T-CTTTC-T-TTCTTTCTTTCTT
1 TCCCTTCTTATTCTTTCTTTCTT
43673832 CTTTTCCTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
20 22 0.56
21 4 0.10
22 10 0.26
23 3 0.08
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.70
Consensus pattern (23 bp):
TCCCTTCTTATTCTTTCTTTCTT
Found at i:43673808 original size:4 final size:4
Alignment explanation
Indices: 43673799--43673835 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
43673789 TCCCTTCTTA
43673799 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTC- TTCT TT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTCT TT
43673836 TCCTTTCCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTCT
Found at i:43673837 original size:12 final size:12
Alignment explanation
Indices: 43673777--43673842 Score: 57
Period size: 12 Copynumber: 5.3 Consensus size: 12
43673767 CCTCCCTTCT
43673777 TTTCTTCTTTT-
1 TTTCTTCTTTTC
*
43673788 TTCCCTTCTTATTC
1 TT-TCTTCTT-TTC
43673802 TTTCTT-TCTTTC
1 TTTCTTCT-TTTC
43673814 TTTCTT-TCTTTC
1 TTTCTTCT-TTTC
43673826 TTTCTTCTTTTCC
1 TTTCTTCTTTT-C
43673839 TTTC
1 TTTC
43673843 CTCGTGTGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
11 2 0.04
12 31 0.66
13 12 0.26
14 2 0.04
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTCTTCTTTTC
Found at i:43674470 original size:63 final size:63
Alignment explanation
Indices: 43674388--43674588 Score: 203
Period size: 63 Copynumber: 3.2 Consensus size: 63
43674378 GTGTGGCAGG
* *
43674388 TCGTGTAACTAATTGTTTGTGAATTAGGGTCACACAGGCTAGAGACACGGGCGTGTGTCCAAGC
1 TCGTGTAACTCATTTTTTGTGAATTAGGGTCACAC-GGCTAGAGACACGGGCGTGTGTCCAAGC
* * * * * * * *
43674452 T-GTGTAACTCATTTTTTGTGAATTAAGGTCACACGAGCTAGAGACACAGACATGCG-GCTAGG
1 TCGTGTAACTCATTTTTTGTGAATTAGGGTCACACG-GCTAGAGACACGGGCGTGTGTCCAAGC
* * * *
43674514 TCGTGTAACTCACTATTTT-TGAATTAGGGTCACATGGGCTAGAGACACGAGCGTGTGTCTAAG-
1 TCGTGTAACTCA-TTTTTTGTGAATTAGGGTCACA-CGGCTAGAGACACGGGCGTGTGTCCAAGC
*
43674577 TCGTTTAACTCA
1 TCGTGTAACTCA
43674589 GTGATTTGGG
Statistics
Matches: 110, Mismatches: 22, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
62 5 0.05
63 96 0.87
64 9 0.08
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (63 bp):
TCGTGTAACTCATTTTTTGTGAATTAGGGTCACACGGCTAGAGACACGGGCGTGTGTCCAAGC
Found at i:43675254 original size:16 final size:18
Alignment explanation
Indices: 43675214--43675256 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
43675204 TGACTCTGCA
*
43675214 TTTGTATCTAAATCTGTC
1 TTTGTATCTAAATATGTC
*
43675232 ATTGTATCT-AATATGT-
1 TTTGTATCTAAATATGTC
43675248 TTTGTATCT
1 TTTGTATCT
43675257 GTATCTGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 8 0.36
17 6 0.27
18 8 0.36
ACGTcount: A:0.23, C:0.12, G:0.12, T:0.53
Consensus pattern (18 bp):
TTTGTATCTAAATATGTC
Found at i:43676671 original size:30 final size:30
Alignment explanation
Indices: 43676635--43676695 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
43676625 TCAATTGGCT
*
43676635 ACCCTTGCTTAAATAGCTAAA-CTTCTAATG
1 ACCCTTGCTTAAATAG-GAAATCTTCTAATG
43676665 ACCCTTGCTTAAATAGGAAATCTTCTAATG
1 ACCCTTGCTTAAATAGGAAATCTTCTAATG
43676695 A
1 A
43676696 AAAGAAAGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 3 0.10
30 26 0.90
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.33
Consensus pattern (30 bp):
ACCCTTGCTTAAATAGGAAATCTTCTAATG
Found at i:43677831 original size:30 final size:31
Alignment explanation
Indices: 43677773--43677850 Score: 95
Period size: 30 Copynumber: 2.5 Consensus size: 31
43677763 TGACTTGGAA
*
43677773 GGCTTAATTGATCTTTTAAAAATATTTTACG-
1 GGCTTAATTAAT-TTTTAAAAATATTTTACGT
* * *
43677804 GGCTTAATTAATTTTTTAAATTATTTTAGGT
1 GGCTTAATTAATTTTTAAAAATATTTTACGT
43677835 GGACTTAATTAATTTT
1 GG-CTTAATTAATTTT
43677851 CAAGGACTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
30 15 0.37
31 13 0.32
32 13 0.32
ACGTcount: A:0.31, C:0.06, G:0.13, T:0.50
Consensus pattern (31 bp):
GGCTTAATTAATTTTTAAAAATATTTTACGT
Found at i:43677938 original size:9 final size:9
Alignment explanation
Indices: 43677924--43678008 Score: 70
Period size: 9 Copynumber: 9.3 Consensus size: 9
43677914 TTATTTAACA
43677924 TTTAATAAT
1 TTTAATAAT
43677933 TTTAATAA-
1 TTTAATAAT
**
43677941 CGTATATAAT
1 TTTA-ATAAT
43677951 TTTAATAATT
1 TTTAATAA-T
*
43677961 TTCTAAT-TT
1 TT-TAATAAT
43677970 TTCTAAT-AT
1 TT-TAATAAT
43677979 TTTAATAAT
1 TTTAATAAT
43677988 TTCTAATAAT
1 TT-TAATAAT
43677998 TTTAA-AAT
1 TTTAATAAT
43678006 TTT
1 TTT
43678009 TTAACAAAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
8 12 0.19
9 34 0.53
10 14 0.22
11 4 0.06
ACGTcount: A:0.39, C:0.05, G:0.01, T:0.55
Consensus pattern (9 bp):
TTTAATAAT
Found at i:43677971 original size:18 final size:20
Alignment explanation
Indices: 43677950--43678012 Score: 71
Period size: 19 Copynumber: 3.3 Consensus size: 20
43677940 ACGTATATAA
*
43677950 TTTTAATAATTTT-CTAATT
1 TTTTAATAATTTTAATAATT
43677969 TTTCTAAT-ATTTTAATAA-T
1 TTT-TAATAATTTTAATAATT
*
43677988 TTCTAATAATTTTAA-AATT
1 TTTTAATAATTTTAATAATT
43678007 TTTTAA
1 TTTTAA
43678013 CAAAAATTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
18 6 0.16
19 24 0.65
20 7 0.19
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTAATAATTTTAATAATT
Found at i:43677977 original size:38 final size:38
Alignment explanation
Indices: 43677935--43678009 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
43677925 TTAATAATTT
**
43677935 TAATAACGTATATAATTT-TAATAATTTTCTAATTTTTC
1 TAATAACGTA-ATAATTTCTAATAATTTTAAAATTTTTC
***
43677973 TAATATTTTAATAATTTCTAATAATTTTAAAATTTTT
1 TAATAACGTAATAATTTCTAATAATTTTAAAATTTTT
43678010 TAACAAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 7 0.23
38 24 0.77
ACGTcount: A:0.39, C:0.05, G:0.01, T:0.55
Consensus pattern (38 bp):
TAATAACGTAATAATTTCTAATAATTTTAAAATTTTTC
Found at i:43678007 original size:27 final size:27
Alignment explanation
Indices: 43677924--43678008 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 27
43677914 TTATTTAACA
* * *
43677924 TTTAATAATTT-TAATAACGTATATAAT
1 TTTAATAATTTCTAATAA-TTTTAAAAT
* *
43677951 TTTAATAATTTTCTAAT-TTTTCTAATAT
1 TTTAATAA-TTTCTAATAATTT-TAAAAT
43677979 TTTAATAATTTCTAATAATTTTAAAAT
1 TTTAATAATTTCTAATAATTTTAAAAT
43678006 TTT
1 TTT
43678009 TTAACAAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
27 25 0.53
28 18 0.38
29 4 0.09
ACGTcount: A:0.39, C:0.05, G:0.01, T:0.55
Consensus pattern (27 bp):
TTTAATAATTTCTAATAATTTTAAAAT
Found at i:43679602 original size:56 final size:53
Alignment explanation
Indices: 43679534--43679781 Score: 202
Period size: 50 Copynumber: 4.7 Consensus size: 53
43679524 GGGATGAGAC
*
43679534 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTTAGGTTATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGA-G--ATGAGAGGT
* *
43679590 CCCACGTAAGACCATGTCTGGGACATGGCGTTGG---TATTGAGATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGATGAGAGGT
** * * * **
43679640 CCTTTGTAAGACCATGTCTGGGACATGGCATGGGC---ATCGATATGAGAACT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGATGAGAGGT
* * * * * * * * * **
43679690 CTCATGTAAGACCATATCTGGGATATGGCATTTGCAGTATAGGAAAAGGAAACAT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTAT-TG-AGATGAGAGGT
* *
43679745 CCCATGTAAGACCATGTTTGGGACATGGCTTTGGCAT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
43679782 GTTACTATTA
Statistics
Matches: 154, Mismatches: 32, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
50 77 0.50
52 1 0.01
53 7 0.05
54 1 0.01
55 36 0.23
56 32 0.21
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (53 bp):
CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGATGAGAGGT
Found at i:43681883 original size:16 final size:16
Alignment explanation
Indices: 43681862--43681892 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
43681852 AAATTAAATT
*
43681862 AATTAATTAATTTTCC
1 AATTAAATAATTTTCC
43681878 AATTAAATAATTTTC
1 AATTAAATAATTTTC
43681893 TCAACCCAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAAATAATTTTCC
Found at i:43686595 original size:56 final size:57
Alignment explanation
Indices: 43686495--43686604 Score: 204
Period size: 56 Copynumber: 1.9 Consensus size: 57
43686485 AAATCACTTG
43686495 ACTTTCGATACGCAACACTTTTACCTTGACTAATTGACCAATTAATAAAATCTACTA
1 ACTTTCGATACGCAACACTTTTACCTTGACTAATTGACCAATTAATAAAATCTACTA
*
43686552 ACTTTCGATATGCAACAC-TTTACCTTGACTAATTGACCAATTAATAAAATCTA
1 ACTTTCGATACGCAACACTTTTACCTTGACTAATTGACCAATTAATAAAATCTA
43686605 TTAAATCACG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
56 35 0.67
57 17 0.33
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.34
Consensus pattern (57 bp):
ACTTTCGATACGCAACACTTTTACCTTGACTAATTGACCAATTAATAAAATCTACTA
Found at i:43686867 original size:57 final size:57
Alignment explanation
Indices: 43686798--43686913 Score: 223
Period size: 57 Copynumber: 2.0 Consensus size: 57
43686788 ATATGATTTT
43686798 ATCATTTTAGTCACCCGCCATTAATATGTCATTACATACACTCATTTTTGTCACCCA
1 ATCATTTTAGTCACCCGCCATTAATATGTCATTACATACACTCATTTTTGTCACCCA
*
43686855 ATCATTTTAGTCACCGGCCATTAATATGTCATTACATACACTCATTTTTGTCACCCA
1 ATCATTTTAGTCACCCGCCATTAATATGTCATTACATACACTCATTTTTGTCACCCA
43686912 AT
1 AT
43686914 TTTAGTAAGT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (57 bp):
ATCATTTTAGTCACCCGCCATTAATATGTCATTACATACACTCATTTTTGTCACCCA
Found at i:43686980 original size:19 final size:20
Alignment explanation
Indices: 43686944--43686987 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
43686934 GTCACTCATT
* *
43686944 TTTTTAAAATTTCCTTTT-G
1 TTTTTAAAAATTCATTTTAG
*
43686963 TTTTTAAAAATTGATTTTAG
1 TTTTTAAAAATTCATTTTAG
43686983 TTTTT
1 TTTTT
43686988 TATACGGTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.64
Consensus pattern (20 bp):
TTTTTAAAAATTCATTTTAG
Found at i:43698047 original size:42 final size:42
Alignment explanation
Indices: 43697960--43698136 Score: 158
Period size: 42 Copynumber: 4.2 Consensus size: 42
43697950 GGTTGCATAA
* * * *
43697960 AAGCACATAAGTGCTAAAC-GAAAACCCGTAAGGGTTAAACGG
1 AAGCTCATAAGAGCTAAACAG-AAACCCATAAGGGTTAAACTG
* * * *
43698002 AAGCTCATAGGACCTTAACAGAAACCCATAAGGGTTAATCTG
1 AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACTG
* * ** * *
43698044 AAGCACAGAAGAGCTAAATGGAAACCCATTAGGGCTAAACTG
1 AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACTG
* * * * *
43698086 AAGCTCAAAAGAGCTGAACTGAAACCCAAAAGGGTTAATCTG
1 AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACTG
*
43698128 AAACTCATA
1 AAGCTCATA
43698137 TGAGTTGACT
Statistics
Matches: 105, Mismatches: 29, Indels: 2
0.77 0.21 0.01
Matches are distributed among these distances:
42 104 0.99
43 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.21, T:0.17
Consensus pattern (42 bp):
AAGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTAAACTG
Found at i:43698083 original size:84 final size:84
Alignment explanation
Indices: 43697960--43698129 Score: 214
Period size: 84 Copynumber: 2.0 Consensus size: 84
43697950 GGTTGCATAA
* * * * * * *
43697960 AAGCACATAAGTGCTAAACGAAAACCCGTAAGGGTTAAACGGAAGCTCATAGGACCTTAACAGAA
1 AAGCACAGAAGAGCTAAACGAAAACCCATAAGGGCTAAACGGAAGCTCAAAAGACCTGAACAGAA
*
43698025 ACCCATAAGGGTTAATCTG
66 ACCCAAAAGGGTTAATCTG
* * * * * *
43698044 AAGCACAGAAGAGCTAAATGGAAACCCATTAGGGCTAAACTGAAGCTCAAAAGAGCTGAACTGAA
1 AAGCACAGAAGAGCTAAACGAAAACCCATAAGGGCTAAACGGAAGCTCAAAAGACCTGAACAGAA
43698109 ACCCAAAAGGGTTAATCTG
66 ACCCAAAAGGGTTAATCTG
43698128 AA
1 AA
43698130 ACTCATATGA
Statistics
Matches: 72, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
84 72 1.00
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.16
Consensus pattern (84 bp):
AAGCACAGAAGAGCTAAACGAAAACCCATAAGGGCTAAACGGAAGCTCAAAAGACCTGAACAGAA
ACCCAAAAGGGTTAATCTG
Found at i:43704257 original size:20 final size:20
Alignment explanation
Indices: 43704232--43704273 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
43704222 TTCTATATAC
43704232 TTACTTTAATTCATAGATCA
1 TTACTTTAATTCATAGATCA
*
43704252 TTACTTTAGTTCATAGATCA
1 TTACTTTAATTCATAGATCA
43704272 TT
1 TT
43704274 TCATATAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (20 bp):
TTACTTTAATTCATAGATCA
Found at i:43708449 original size:10 final size:11
Alignment explanation
Indices: 43708424--43708454 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
43708414 TCTTTACTCT
43708424 TTTTTGCTTTA
1 TTTTTGCTTTA
43708435 TTTTTGCTTTA
1 TTTTTGCTTTA
43708446 TTTTT-CTTT
1 TTTTTGCTTT
43708455 CTAGCCTCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.20
11 16 0.80
ACGTcount: A:0.06, C:0.10, G:0.06, T:0.77
Consensus pattern (11 bp):
TTTTTGCTTTA
Found at i:43713076 original size:20 final size:20
Alignment explanation
Indices: 43713048--43713085 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
43713038 TATTTTCTAC
*
43713048 TAAATCATTTTACAGAAAAG
1 TAAAACATTTTACAGAAAAG
*
43713068 TAAAACATTTTCCAGAAA
1 TAAAACATTTTACAGAAA
43713086 TCATTTTACG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.08, T:0.29
Consensus pattern (20 bp):
TAAAACATTTTACAGAAAAG
Found at i:43713092 original size:14 final size:14
Alignment explanation
Indices: 43713069--43713108 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
43713059 ACAGAAAAGT
*
43713069 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
43713083 AAATCATTTTACGG
1 AAAACATTTTACAG
43713097 AAAACATTTTAC
1 AAAACATTTTAC
43713109 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:43719392 original size:26 final size:26
Alignment explanation
Indices: 43719339--43719436 Score: 93
Period size: 26 Copynumber: 4.0 Consensus size: 26
43719329 ATATTAAGAA
43719339 TATTATTAAATTATA--T-AT--TAT
1 TATTATTAAATTATATTTAATAATAT
*
43719360 TTTTATTAAATTATATTTAATAATAGT
1 TATTATTAAATTATATTTAATAATA-T
** *
43719387 TA-TATTAAAAAATAATTTATTAAT-T
1 TATTATTAAATTAT-ATTTAATAATAT
43719412 TATTATTAAATTATATTTAATAATA
1 TATTATTAAATTATATTTAATAATA
43719437 ATCCTATTAA
Statistics
Matches: 60, Mismatches: 8, Indels: 13
0.74 0.10 0.16
Matches are distributed among these distances:
21 14 0.23
23 1 0.02
24 2 0.03
25 12 0.20
26 20 0.33
27 11 0.18
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (26 bp):
TATTATTAAATTATATTTAATAATAT
Found at i:43719400 original size:16 final size:16
Alignment explanation
Indices: 43719368--43719409 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
43719358 ATTTTTATTA
* *
43719368 AATTATATTTAATAAT
1 AATTATATTAAAAAAT
*
43719384 AGTTATATTAAAAAAT
1 AATTATATTAAAAAAT
43719400 AATT-TATTAA
1 AATTATATTAA
43719410 TTTATTATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
AATTATATTAAAAAAT
Found at i:43719444 original size:26 final size:24
Alignment explanation
Indices: 43719325--43719447 Score: 78
Period size: 26 Copynumber: 5.1 Consensus size: 24
43719315 ATATAAAAAT
*
43719325 AATTATA-TTAAGAAT-ATTATTA
1 AATTATATTTAATAATAATTATTA
*
43719347 AATTATATATT-AT--T-TTTATTA
1 AATTATAT-TTAATAATAATTATTA
*
43719368 AATTATATTTAATAATAGTTATATTA
1 AATTATATTTAATAATA-AT-TATTA
** * *
43719394 AAAAATAATTTATTAATTTATTATTA
1 AATTAT-ATTTAATAA-TAATTATTA
43719420 AATTATATTTAATAATAATCCTATTA
1 AATTATATTTAATAATAAT--TATTA
43719446 AA
1 AA
43719448 ATTTAATAAC
Statistics
Matches: 78, Mismatches: 11, Indels: 20
0.72 0.10 0.18
Matches are distributed among these distances:
20 2 0.03
21 17 0.22
22 7 0.09
23 2 0.03
24 5 0.06
25 10 0.13
26 25 0.32
27 9 0.12
28 1 0.01
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (24 bp):
AATTATATTTAATAATAATTATTA
Found at i:43720785 original size:11 final size:11
Alignment explanation
Indices: 43720771--43720795 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
43720761 CAAAACTTTG
43720771 ACATGAGCCGA
1 ACATGAGCCGA
43720782 ACATGAGCCGA
1 ACATGAGCCGA
43720793 ACA
1 ACA
43720796 GGGGTGGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.28, G:0.24, T:0.08
Consensus pattern (11 bp):
ACATGAGCCGA
Found at i:43722372 original size:32 final size:32
Alignment explanation
Indices: 43722275--43722372 Score: 87
Period size: 32 Copynumber: 3.1 Consensus size: 32
43722265 TATATGTATG
*
43722275 TATATATGT-TTTAA-AATTATGAAATATAAAA
1 TATATATGTATGTAAGAATTATGAAATA-AAAA
* * * * * *
43722306 -ATATATGTAAGTATGTATATAT-ACATATATA
1 TATATATGTATGTAAGAAT-TATGAAATAAAAA
43722337 TATATATGTATGTAAGAATTATGAAATAAAAA
1 TATATATGTATGTAAGAATTATGAAATAAAAA
43722369 TATA
1 TATA
43722373 AAAGTAAGTG
Statistics
Matches: 49, Mismatches: 13, Indels: 9
0.69 0.18 0.13
Matches are distributed among these distances:
30 8 0.16
31 7 0.14
32 31 0.63
33 3 0.06
ACGTcount: A:0.50, C:0.01, G:0.09, T:0.40
Consensus pattern (32 bp):
TATATATGTATGTAAGAATTATGAAATAAAAA
Found at i:43734317 original size:27 final size:27
Alignment explanation
Indices: 43734287--43734352 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
43734277 CCTGCTCACT
*
43734287 AGGCCTACTGGCGAATATTAACTCGCC
1 AGGCCTACTGGCGAATACTAACTCGCC
* * *
43734314 AGGCCCACTAGTGAATACTAACTCGCC
1 AGGCCTACTGGCGAATACTAACTCGCC
*
43734341 AGGCCTAGTGGC
1 AGGCCTACTGGC
43734353 AAACACCAGC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (27 bp):
AGGCCTACTGGCGAATACTAACTCGCC
Found at i:43735537 original size:14 final size:14
Alignment explanation
Indices: 43735512--43735551 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
43735502 CTATACAAAT
43735512 AATAATAAGAAAGGA
1 AATAA-AAGAAAGGA
*
43735527 AATAAAAGAAAGTA
1 AATAAAAGAAAGGA
*
43735541 AATAAATGAAA
1 AATAAAAGAAA
43735552 CACGAGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (14 bp):
AATAAAAGAAAGGA
Found at i:43737031 original size:54 final size:53
Alignment explanation
Indices: 43736958--43737060 Score: 170
Period size: 54 Copynumber: 1.9 Consensus size: 53
43736948 GTCCTCACTG
*
43736958 AGTTCCCCACACGCCCGTGTGCCAGGCCGTGTGCTAGGCTGTGTAACTCTCTA
1 AGTTCCCCACACGCCCGTGTGCCAGGCCGTGTGCTAGGCCGTGTAACTCTCTA
* *
43737011 AGTTCCCACACACGCTCGTGTTCCAGGCCGTGTGCTAGGCCGTGTAACTC
1 AGTTCCC-CACACGCCCGTGTGCCAGGCCGTGTGCTAGGCCGTGTAACTC
43737061 ACAGACTTGG
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
53 7 0.15
54 39 0.85
ACGTcount: A:0.16, C:0.34, G:0.26, T:0.24
Consensus pattern (53 bp):
AGTTCCCCACACGCCCGTGTGCCAGGCCGTGTGCTAGGCCGTGTAACTCTCTA
Found at i:43744746 original size:6 final size:6
Alignment explanation
Indices: 43744735--43744764 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
43744725 TCCAGATTAT
43744735 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
43744765 CAAAATAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:43752000 original size:73 final size:72
Alignment explanation
Indices: 43751887--43752039 Score: 207
Period size: 73 Copynumber: 2.1 Consensus size: 72
43751877 GTGAGATCAA
* * * * * *
43751887 GAGGAAATCTATATGCCTAGTTAAGACCAAGAGGAGAGCTTATGTGGTATCTTTTCGTCTAGGAT
1 GAGGAGATCGATATGCCTAATTAAGACCAAGAGGAAAGCTTATGTGGTACCTTTTAGTCTAGGAT
43751952 GAGACCG
66 GAGACCG
* * * *
43751959 AGGGGAGATCGATATGCCTAATTGAGACCAAGGGGAAAGCTTATGTGGTACCTTTTATTCTAGGA
1 -GAGGAGATCGATATGCCTAATTAAGACCAAGAGGAAAGCTTATGTGGTACCTTTTAGTCTAGGA
43752024 TGAGACCG
65 TGAGACCG
43752032 GAGGAGAT
1 GAGGAGAT
43752040 TCTTACCTAA
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
72 7 0.10
73 62 0.90
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.26
Consensus pattern (72 bp):
GAGGAGATCGATATGCCTAATTAAGACCAAGAGGAAAGCTTATGTGGTACCTTTTAGTCTAGGAT
GAGACCG
Found at i:43766139 original size:20 final size:20
Alignment explanation
Indices: 43766095--43766139 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
43766085 GAAATTTTCA
* **
43766095 TTTTTGTGTTTTGTTTGCTT
1 TTTTTATGTTTTGTTTAATT
*
43766115 ATTTTATGTTTTGTTTAATT
1 TTTTTATGTTTTGTTTAATT
43766135 TTTTT
1 TTTTT
43766140 CTAAAATATT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.09, C:0.02, G:0.13, T:0.76
Consensus pattern (20 bp):
TTTTTATGTTTTGTTTAATT
Found at i:43770511 original size:38 final size:38
Alignment explanation
Indices: 43770460--43770533 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
43770450 TAAAAAATTT
43770460 TGTAAATAGAAATGGATCAAGCCTTTAGGTTCCATTAA
1 TGTAAATAGAAATGGATCAAGCCTTTAGGTTCCATTAA
43770498 TGTAAATAGAAATGGATCAAGCCTTTAGGTTCCATT
1 TGTAAATAGAAATGGATCAAGCCTTTAGGTTCCATT
43770534 GATTCTACAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (38 bp):
TGTAAATAGAAATGGATCAAGCCTTTAGGTTCCATTAA
Found at i:43774776 original size:32 final size:32
Alignment explanation
Indices: 43774740--43774862 Score: 149
Period size: 32 Copynumber: 3.8 Consensus size: 32
43774730 CCATAAGTAC
* * *
43774740 AGTAATATGATTGGCACAAAGCCATCAGTAGT
1 AGTAATATGATCGACACAAAGCCATCAGTAAT
* *
43774772 AGTAATATGATCGACACACAGCCATTAGTAAT
1 AGTAATATGATCGACACAAAGCCATCAGTAAT
* *
43774804 -GATAATATGATCAACACACAGCCATCAGTAAT
1 AG-TAATATGATCGACACAAAGCCATCAGTAAT
* *
43774836 GGTAATATGATCGGCACAAAGCCATCA
1 AGTAATATGATCGACACAAAGCCATCA
43774863 ATAGCATCAC
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
31 1 0.01
32 77 0.97
33 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.23
Consensus pattern (32 bp):
AGTAATATGATCGACACAAAGCCATCAGTAAT
Found at i:43775095 original size:24 final size:24
Alignment explanation
Indices: 43775037--43775142 Score: 113
Period size: 24 Copynumber: 4.4 Consensus size: 24
43775027 CCATGCACGG
** *
43775037 AATCAGTCATACAAATCACAGATA
1 AATCAGTCATTTAAATCACAGACA
43775061 AATCAGTCATTTAAATCACAGACA
1 AATCAGTCATTTAAATCACAGACA
* ***
43775085 AATCAGTCATTTACATCTTGGACA
1 AATCAGTCATTTAAATCACAGACA
* * *
43775109 AATCATTCATTTACATCACAGGCA
1 AATCAGTCATTTAAATCACAGACA
*
43775133 AATCAATCAT
1 AATCAGTCAT
43775143 GTAACCCCAA
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 69 1.00
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.27
Consensus pattern (24 bp):
AATCAGTCATTTAAATCACAGACA
Found at i:43775199 original size:27 final size:27
Alignment explanation
Indices: 43775167--43775283 Score: 155
Period size: 27 Copynumber: 4.4 Consensus size: 27
43775157 CAAAATAGTT
*
43775167 ATTTTACCCTACAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
43775194 AATTTACCCTATAGGGGCATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
*
43775221 ATTTTACCCTATAGGGGCATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* * * *
43775248 ATTTTATCCTACA-GGGTATTTCAGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
43775274 ATTTTACCCT
1 ATTTTACCCT
43775284 TCGGGGATAT
Statistics
Matches: 80, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 19 0.24
27 61 0.76
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (27 bp):
ATTTTACCCTACAGGGGCATTACGGTC
Found at i:43775225 original size:54 final size:54
Alignment explanation
Indices: 43775167--43775337 Score: 177
Period size: 54 Copynumber: 3.2 Consensus size: 54
43775157 CAAAATAGTT
* *
43775167 ATTTTACCCTACAGGGGTATTACGGTCAATTTACCCTATAGGGGCATTACGGTC
1 ATTTTACCCTACAGGGGTATTACGGTCAATTTACCCTATAGGGGTATTTCGGTC
* * * * * *
43775221 ATTTTACCCTATAGGGGCATTACGGTCATTTTATCCTACA-GGGTATTTCAGTC
1 ATTTTACCCTACAGGGGTATTACGGTCAATTTACCCTATAGGGGTATTTCGGTC
* * * * * *
43775274 ATTTTACCCTTC-GGGGATATTTC-GACAATTTTACCCTTTGGGGGTATTTCGATC
1 ATTTTACCCTACAGGGG-TATTACGGTCAA-TTTACCCTATAGGGGTATTTCGGTC
43775328 ATTTTACCCT
1 ATTTTACCCT
43775338 TCGAGGGTAT
Statistics
Matches: 94, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
52 7 0.07
53 31 0.33
54 56 0.60
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (54 bp):
ATTTTACCCTACAGGGGTATTACGGTCAATTTACCCTATAGGGGTATTTCGGTC
Found at i:43775304 original size:27 final size:26
Alignment explanation
Indices: 43775167--43775367 Score: 138
Period size: 27 Copynumber: 7.5 Consensus size: 26
43775157 CAAAATAGTT
* * *
43775167 ATTTTACCCTACAGGGGTATTACGGTC
1 ATTTTACCCTTC-GGGGTATTTCGATC
* * * * *
43775194 AATTTACCCTATAGGGGCATTACGGTC
1 ATTTTACCCT-TCGGGGTATTTCGATC
* * * *
43775221 ATTTTACCCTATAGGGGCATTACGGTC
1 ATTTTACCCT-TCGGGGTATTTCGATC
* * *
43775248 ATTTTATCCTACAGGGTATTTC-AGTC
1 ATTTTACCCTTCGGGGTATTTCGA-TC
43775274 ATTTTACCCTTCGGGGATATTTCGA-C
1 ATTTTACCCTTCGGGG-TATTTCGATC
*
43775300 AATTTTACCCTTTGGGGGTATTTCGATC
1 -ATTTTACCC-TTCGGGGTATTTCGATC
*
43775328 ATTTTACCCTTCGAGGGTA-TTCTAGTC
1 ATTTTACCCTTCG-GGGTATTTCGA-TC
*
43775355 ATTTTATCCTTCG
1 ATTTTACCCTTCG
43775368 AGCATATTTT
Statistics
Matches: 146, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
26 30 0.21
27 108 0.74
28 8 0.05
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (26 bp):
ATTTTACCCTTCGGGGTATTTCGATC
Found at i:43775366 original size:81 final size:80
Alignment explanation
Indices: 43775221--43775376 Score: 197
Period size: 80 Copynumber: 1.9 Consensus size: 80
43775211 CATTACGGTC
* *
43775221 ATTTTACCCTATAGGGGCATTACGGTCATTTTATCCTACAGGGTATTTCAGTCATTTTACCCTTC
1 ATTTTACCCTATAGGGGCATTACGATCATTTTACCCTACAGGGTATTTCAGTCATTTTACCCTTC
* *
43775286 GGGGATATTTCGACA
66 GAGCATATTTCGACA
* * * * * *
43775301 ATTTTACCCTTTGGGGGTATTTCGATCATTTTACCCTTCGAGGGTA-TTCTAGTCATTTTATCCT
1 ATTTTACCCTATAGGGGCATTACGATCATTTTACCCTAC-AGGGTATTTC-AGTCATTTTACCCT
43775365 TCGAGCATATTT
64 TCGAGCATATTT
43775377 TAGTAATTTT
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
80 35 0.55
81 29 0.45
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.41
Consensus pattern (80 bp):
ATTTTACCCTATAGGGGCATTACGATCATTTTACCCTACAGGGTATTTCAGTCATTTTACCCTTC
GAGCATATTTCGACA
Found at i:43775368 original size:27 final size:26
Alignment explanation
Indices: 43775245--43775389 Score: 123
Period size: 27 Copynumber: 5.4 Consensus size: 26
43775235 GGGCATTACG
* *
43775245 GTCATTTTATCCTAC-AGGGTATTTCA
1 GTCATTTTACCCTTCGAGGGTATTT-A
*
43775271 GTCATTTTACCCTTCG-GGGATATTTC
1 GTCATTTTACCCTTCGAGGG-TATTTA
* * * *
43775297 GACAATTTTACCCTTTGGGGGTATTTC
1 GTC-ATTTTACCCTTCGAGGGTATTTA
43775324 GATCATTTTACCCTTCGAGGGTATTCTA
1 G-TCATTTTACCCTTCGAGGGTATT-TA
* **
43775352 GTCATTTTATCCTTCGAGCATATTTTA
1 GTCATTTTACCCTTCGAGGGTA-TTTA
*
43775379 GTAATTTTACC
1 GTCATTTTACC
43775390 TTTCTGAAGG
Statistics
Matches: 98, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
26 18 0.18
27 72 0.73
28 8 0.08
ACGTcount: A:0.21, C:0.20, G:0.17, T:0.43
Consensus pattern (26 bp):
GTCATTTTACCCTTCGAGGGTATTTA
Found at i:43775376 original size:54 final size:53
Alignment explanation
Indices: 43775245--43775389 Score: 143
Period size: 54 Copynumber: 2.7 Consensus size: 53
43775235 GGGCATTACG
* *
43775245 GTCATTTTATCCTAC-AGGGTATTTCAGTCATTTTACCCTTCGGGGATATTTC
1 GTCATTTTATCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGGGGATATTTA
* * * *
43775297 GACAATTTTACCCTTTGGGGGTATTTC-GATCATTTTACCCTTCGAGGG-TATTCTA
1 GTC-ATTTTATCCTTCGAGGGTATTTCAG-TCATTTTACCCTTCG-GGGATATT-TA
** * *
43775352 GTCATTTTATCCTTCGAGCATATTTTAGTAATTTTACC
1 GTCATTTTATCCTTCGAGGGTATTTCAGTCATTTTACC
43775390 TTTCTGAAGG
Statistics
Matches: 73, Mismatches: 14, Indels: 10
0.75 0.14 0.10
Matches are distributed among these distances:
52 2 0.03
53 10 0.14
54 54 0.74
55 7 0.10
ACGTcount: A:0.21, C:0.20, G:0.17, T:0.43
Consensus pattern (53 bp):
GTCATTTTATCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGGGGATATTTA
Found at i:43777400 original size:23 final size:23
Alignment explanation
Indices: 43777374--43777417 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
43777364 AATACTTGAT
43777374 TAAGGATCTTTTAAGAATAATAA
1 TAAGGATCTTTTAAGAATAATAA
43777397 TAAGGATCTTTTAAGAATAAT
1 TAAGGATCTTTTAAGAATAAT
43777418 CATATTATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (23 bp):
TAAGGATCTTTTAAGAATAATAA
Found at i:43781962 original size:19 final size:19
Alignment explanation
Indices: 43781940--43782001 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
43781930 TAAAATATTG
43781940 ATAAATGGAAAATGGTCAA
1 ATAAATGGAAAATGGTCAA
* *
43781959 ATAAGTGTAAAATGGTCAA
1 ATAAATGGAAAATGGTCAA
*
43781978 ATGCTAAATGGTAAATGGTCAA
1 A---TAAATGGAAAATGGTCAA
43782000 AT
1 AT
43782002 GGTAAATTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 19 0.54
22 16 0.46
ACGTcount: A:0.47, C:0.06, G:0.21, T:0.26
Consensus pattern (19 bp):
ATAAATGGAAAATGGTCAA
Found at i:43781988 original size:15 final size:15
Alignment explanation
Indices: 43781968--43782008 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
43781958 AATAAGTGTA
43781968 AAATGGTCAAATGCT-
1 AAATGGT-AAATGCTC
*
43781983 AAATGGTAAATGGTC
1 AAATGGTAAATGCTC
43781998 AAATGGTAAAT
1 AAATGGTAAAT
43782009 TGATTAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 6 0.25
15 18 0.75
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.27
Consensus pattern (15 bp):
AAATGGTAAATGCTC
Found at i:43781992 original size:7 final size:7
Alignment explanation
Indices: 43781968--43782008 Score: 55
Period size: 7 Copynumber: 5.6 Consensus size: 7
43781958 AATAAGTGTA
43781968 AAATGGT
1 AAATGGT
*
43781975 CAAATGCT
1 -AAATGGT
43781983 AAATGGT
1 AAATGGT
43781990 AAATGGT
1 AAATGGT
43781997 CAAATGGT
1 -AAATGGT
43782005 AAAT
1 AAAT
43782009 TGATTAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
7 17 0.57
8 13 0.43
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.27
Consensus pattern (7 bp):
AAATGGT
Found at i:43796809 original size:20 final size:18
Alignment explanation
Indices: 43796786--43796846 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 18
43796776 GAAGGCTAAG
43796786 AAAATAAAAAGAAAACAACT
1 AAAATAAAAAGAAAA-AA-T
43796806 AAAAGTAAAAAGTAAAAAAT
1 AAAA-TAAAAAG-AAAAAAT
*
43796826 AAGAATAAAAA-TAAAAAT
1 AA-AATAAAAAGAAAAAAT
43796844 AAA
1 AAA
43796847 TAGAAAATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
17 1 0.03
18 8 0.22
20 13 0.35
21 11 0.30
22 4 0.11
ACGTcount: A:0.77, C:0.03, G:0.07, T:0.13
Consensus pattern (18 bp):
AAAATAAAAAGAAAAAAT
Found at i:43796832 original size:6 final size:6
Alignment explanation
Indices: 43796786--43796846 Score: 50
Period size: 6 Copynumber: 9.3 Consensus size: 6
43796776 GAAGGCTAAG
* * *
43796786 AAAATA AAAAGAA AACAACTA AAAGTA AAAAGTAA AAAATA AGAATA AAAATA
1 AAAATA AAAA-TA AA-AA-TA AAAATA AAAA-T-A AAAATA AAAATA AAAATA
43796839 AAAATA AA
1 AAAATA AA
43796847 TAGAAAATAA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
6 28 0.64
7 6 0.14
8 10 0.23
ACGTcount: A:0.77, C:0.03, G:0.07, T:0.13
Consensus pattern (6 bp):
AAAATA
Found at i:43800097 original size:100 final size:100
Alignment explanation
Indices: 43799988--43800345 Score: 707
Period size: 100 Copynumber: 3.6 Consensus size: 100
43799978 GAATATACTG
*
43799988 AACCTTTTGACACGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAAACT
1 AACCTTTTGACACAAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAAACT
43800053 CCTAATTTATTATAATTTTTCTTAAGAACACATCA
66 CCTAATTTATTATAATTTTTCTTAAGAACACATCA
43800088 AACCTTTTGACACAAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAAACT
1 AACCTTTTGACACAAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAAACT
43800153 CCTAATTTATTATAATTTTTCTTAAGAACACATCA
66 CCTAATTTATTATAATTTTTCTTAAGAACACATCA
43800188 AACCTTTTGACACAAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAAACT
1 AACCTTTTGACACAAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAAACT
43800253 CCTAATTTATTATAATTTTTCTTAAGAACACATCA
66 CCTAATTTATTATAATTTTTCTTAAGAACACATCA
43800288 AACCTTTTGACACAAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCA
1 AACCTTTTGACACAAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCA
43800346 ACATGTTCTT
Statistics
Matches: 257, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 257 1.00
ACGTcount: A:0.34, C:0.30, G:0.13, T:0.22
Consensus pattern (100 bp):
AACCTTTTGACACAAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAAACT
CCTAATTTATTATAATTTTTCTTAAGAACACATCA
Found at i:43801226 original size:19 final size:20
Alignment explanation
Indices: 43801186--43801230 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
43801176 ATTAATATCC
43801186 AAAT-AAGTAAAATAAAATA
1 AAATAAAGTAAAATAAAATA
43801205 AAATAAAGT-AAA-AAAATAA
1 AAATAAAGTAAAATAAAAT-A
43801224 AAATAAA
1 AAATAAA
43801231 AATTGGGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.21
19 15 0.62
20 4 0.17
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (20 bp):
AAATAAAGTAAAATAAAATA
Found at i:43813645 original size:17 final size:17
Alignment explanation
Indices: 43813623--43813660 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
43813613 CATATTTGCT
43813623 CACACGGTCATGTGCCA
1 CACACGGTCATGTGCCA
* *
43813640 CACACGGTCGTTTGCCA
1 CACACGGTCATGTGCCA
43813657 CACA
1 CACA
43813661 TGGGCAAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.37, G:0.21, T:0.18
Consensus pattern (17 bp):
CACACGGTCATGTGCCA
Found at i:43814764 original size:22 final size:22
Alignment explanation
Indices: 43814720--43814764 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
43814710 TCATCTTCCA
*
43814720 TCATCCAACCATATTAAGTTAC
1 TCATCCAACCATATTAAGCTAC
*
43814742 TCAT-CAACCATTTTAAGGCTAC
1 TCATCCAACCATATTAA-GCTAC
43814764 T
1 T
43814765 TATATACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (22 bp):
TCATCCAACCATATTAAGCTAC
Found at i:43815437 original size:25 final size:25
Alignment explanation
Indices: 43815396--43815479 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 25
43815386 TCACGTACAT
*
43815396 GTATGCTCAT-ACAAGCTATGAATCG
1 GTATGCTC-TCACAAGCTATAAATCG
* *
43815421 GTATGCTCTCACGAGCTATAAATTG
1 GTATGCTCTCACAAGCTATAAATCG
* *
43815446 ATATACTCTCACAAGCTATAAATCG
1 GTATGCTCTCACAAGCTATAAATCG
43815471 GTATGCTCT
1 GTATGCTCT
43815480 TACCAACTGT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
24 1 0.02
25 48 0.98
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (25 bp):
GTATGCTCTCACAAGCTATAAATCG
Found at i:43815994 original size:23 final size:23
Alignment explanation
Indices: 43815966--43816073 Score: 81
Period size: 23 Copynumber: 4.7 Consensus size: 23
43815956 CCTGGGTGGC
*
43815966 ATTTTGTTTGGGCTTTATGGCAT
1 ATTTTGTTTGGCCTTTATGGCAT
* ** * *
43815989 ATTTTGCTAAGCCTATATGGCGT
1 ATTTTGTTTGGCCTTTATGGCAT
* *
43816012 ATTCTGTTTGGCCTTTGTGGCAT
1 ATTTTGTTTGGCCTTTATGGCAT
* * ** *
43816035 AATTTGCTAAGCCTATATGGCAT
1 ATTTTGTTTGGCCTTTATGGCAT
* *
43816058 ACTCTGTTTGGCCTTT
1 ATTTTGTTTGGCCTTT
43816074 GTGGTGCATT
Statistics
Matches: 59, Mismatches: 26, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
23 59 1.00
ACGTcount: A:0.17, C:0.17, G:0.22, T:0.44
Consensus pattern (23 bp):
ATTTTGTTTGGCCTTTATGGCAT
Found at i:43816074 original size:46 final size:46
Alignment explanation
Indices: 43815970--43816077 Score: 171
Period size: 46 Copynumber: 2.3 Consensus size: 46
43815960 GGTGGCATTT
* * * * *
43815970 TGTTTGGGCTTTATGGCATATTTTGCTAAGCCTATATGGCGTATTC
1 TGTTTGGCCTTTGTGGCATAATTTGCTAAGCCTATATGGCATACTC
43816016 TGTTTGGCCTTTGTGGCATAATTTGCTAAGCCTATATGGCATACTC
1 TGTTTGGCCTTTGTGGCATAATTTGCTAAGCCTATATGGCATACTC
43816062 TGTTTGGCCTTTGTGG
1 TGTTTGGCCTTTGTGG
43816078 TGCATTATGT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 57 1.00
ACGTcount: A:0.16, C:0.17, G:0.25, T:0.43
Consensus pattern (46 bp):
TGTTTGGCCTTTGTGGCATAATTTGCTAAGCCTATATGGCATACTC
Found at i:43818441 original size:25 final size:25
Alignment explanation
Indices: 43818388--43818499 Score: 66
Period size: 25 Copynumber: 4.5 Consensus size: 25
43818378 TGAACATCCT
* *
43818388 GATATTTGGCTCTCATGCGTTTCTC
1 GATATTTGGCTCTCATGAGCTTCTC
43818413 GATATTTGGCTCT-ATTGAGCTTC-C
1 GATATTTGGCTCTCA-TGAGCTTCTC
** * * *
43818437 AGATAAATGGCTCGCAAGAGCTTCCC
1 -GATATTTGGCTCTCATGAGCTTCTC
* * * * *
43818463 GTTACTTCGCTCACATGAGCTTCCC
1 GATATTTGGCTCTCATGAGCTTCTC
* *
43818488 GTTATATGGCTC
1 GATATTTGGCTC
43818500 GAAAGAGCTT
Statistics
Matches: 68, Mismatches: 15, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
24 2 0.03
25 64 0.94
26 2 0.03
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.35
Consensus pattern (25 bp):
GATATTTGGCTCTCATGAGCTTCTC
Found at i:43818532 original size:25 final size:25
Alignment explanation
Indices: 43818419--43818537 Score: 82
Period size: 25 Copynumber: 4.7 Consensus size: 25
43818409 TCTCGATATT
* * * * *
43818419 TGGCTCTATTGAGCTTCCAGATAAA
1 TGGCTCGAATGAGCTTCCCGTTACA
*
43818444 TGGCTCGCAA-GAGCTTCCCGTTACT
1 TGGCTCG-AATGAGCTTCCCGTTACA
* *
43818469 TCGCTC-ACATGAGCTTCCCGTTATA
1 TGGCTCGA-ATGAGCTTCCCGTTACA
* *
43818494 TGGCTCGAAAGAGCTTCCTGTTTACA
1 TGGCTCGAATGAGCTTCCCG-TTACA
*
43818520 T-GCTCGTATGAGCATTCC
1 TGGCTCGAATGAGC-TTCC
43818538 GGAATATGAA
Statistics
Matches: 73, Mismatches: 15, Indels: 11
0.74 0.15 0.11
Matches are distributed among these distances:
23 1 0.01
24 1 0.01
25 60 0.82
26 11 0.15
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (25 bp):
TGGCTCGAATGAGCTTCCCGTTACA
Found at i:43818532 original size:50 final size:50
Alignment explanation
Indices: 43818428--43818524 Score: 124
Period size: 50 Copynumber: 1.9 Consensus size: 50
43818418 TTGGCTCTAT
* *
43818428 TGAGCTTCCAGATAAATGGCTCGCAAGAGCTTCCCGTTACTTCGCTCACA
1 TGAGCTTCCAGATAAATGGCTCGAAAGAGCTTCCCGTTACATCGCTCACA
* * * *
43818478 TGAGCTTCCCGTTATATGGCTCGAAAGAGCTTCCTGTTTACAT-GCTC
1 TGAGCTTCCAGATAAATGGCTCGAAAGAGCTTCCCG-TTACATCGCTC
43818525 GTATGAGCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
50 35 0.88
51 5 0.12
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (50 bp):
TGAGCTTCCAGATAAATGGCTCGAAAGAGCTTCCCGTTACATCGCTCACA
Found at i:43818545 original size:50 final size:50
Alignment explanation
Indices: 43818443--43818545 Score: 111
Period size: 50 Copynumber: 2.1 Consensus size: 50
43818433 TTCCAGATAA
* * **
43818443 ATGGCTCGCAAGAGCTTCCCGTTACTTCGCTCACATGAGCTTCCCGTTAT
1 ATGGCTCGAAAGAGCTTCCCGTTACATCGCTCACATGAGCTTCCCGGAAT
* **
43818493 ATGGCTCGAAAGAGCTTCCTGTTTACAT-GCTCGTATGAGCATT-CCGGAAT
1 ATGGCTCGAAAGAGCTTCCCG-TTACATCGCTCACATGAGC-TTCCCGGAAT
43818543 ATG
1 ATG
43818546 AATTGAAAGA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
50 37 0.84
51 7 0.16
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.30
Consensus pattern (50 bp):
ATGGCTCGAAAGAGCTTCCCGTTACATCGCTCACATGAGCTTCCCGGAAT
Found at i:43826548 original size:20 final size:22
Alignment explanation
Indices: 43826494--43826550 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 22
43826484 TTTCAACCTT
*
43826494 TAACTTCATTTTCTCTCTAATC
1 TAACTTCATTTTCTCTCGAATC
* *
43826516 CAGCTTC-TCTTTCT-T-GAATC
1 TAACTTCAT-TTTCTCTCGAATC
43826536 TAACTTCATTTTCTC
1 TAACTTCATTTTCTC
43826551 CCTATAGTCA
Statistics
Matches: 27, Mismatches: 5, Indels: 7
0.69 0.13 0.18
Matches are distributed among these distances:
20 14 0.52
21 3 0.11
22 10 0.37
ACGTcount: A:0.19, C:0.28, G:0.04, T:0.49
Consensus pattern (22 bp):
TAACTTCATTTTCTCTCGAATC
Found at i:43826775 original size:8 final size:8
Alignment explanation
Indices: 43826752--43826789 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
43826742 TATATATACT
*
43826752 AAATAAAA
1 AAATAATA
43826760 ATAATAATA
1 A-AATAATA
43826769 AAATAATA
1 AAATAATA
43826777 AAATAATA
1 AAATAATA
43826785 AAATA
1 AAATA
43826790 TTATCTAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATAATA
Found at i:43827319 original size:23 final size:23
Alignment explanation
Indices: 43827272--43827323 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
43827262 ACCTACTTTC
* * *
43827272 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCAGGATA
*
43827295 TTACAGTAGTAATTTTTAGGATA
1 TTACAGTAGTAATTTTCAGGATA
43827318 TTACAG
1 TTACAG
43827324 GGGAAATAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCAGGATA
Found at i:43827398 original size:50 final size:50
Alignment explanation
Indices: 43827323--43828463 Score: 1539
Period size: 50 Copynumber: 22.8 Consensus size: 50
43827313 GGATATTACA
* * * * *
43827323 GGGGAAATAAGATTCGTTGTTGTAGCTTTAATCTGTTTCATTGTAACGCT
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* *
43827373 GGGGAAGTAAGA-TCTGCTGTTGTAGCTTTAATCTGTCTCACCGCAACGCC
1 GGGGAAGTAAGATTC-GCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
** * ** * *
43827423 GGGGAAGTAAGATTCATTGTTGTAGCTTTAACCTACTTCACTGCAATGTC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* * *
43827473 GGGGAAGTAAGATTCACTGTTGTAGCTTTAATCTGCTTCACTGCCACGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* * *
43827523 GGGGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTTCACCGTAACGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* *
43827573 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
** * *
43827623 AAGGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* * * *
43827673 TGGGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTTCACCGTAACGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* *
43827723 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
** * *
43827773 AAGGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* * * *
43827823 TGGGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTTCACCGTAACGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* *
43827873 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
** * *
43827923 AAGGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* * * *
43827973 TGGGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTTCACCGTAACGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* *
43828023 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
** * *
43828073 AAGGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* * * *
43828123 TGGGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTTCACCGTAACGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* *
43828173 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
** * *
43828223 AAGGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* * * *
43828273 TGGGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTTCACCGTAACGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* *
43828323 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* ** * * *
43828373 AGGGAAGTAAGATTCATTGTTGTAGCTTTAATCTATTTCAATGCCACGCC
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
* *
43828423 -GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTGTTCCACT
1 GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACT
43828464 ACAATGCCAG
Statistics
Matches: 951, Mismatches: 138, Indels: 5
0.87 0.13 0.00
Matches are distributed among these distances:
49 39 0.04
50 910 0.96
51 2 0.00
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (50 bp):
GGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTTCACTGCAACGCC
Found at i:43827594 original size:150 final size:150
Alignment explanation
Indices: 43827325--43828458 Score: 1925
Period size: 150 Copynumber: 7.6 Consensus size: 150
43827315 ATATTACAGG
* * * * * *
43827325 GGAAATAAGATTCGTTGTTGTAGCTTTAATCTGTTTCATTGTAACG-CTGGGGAAGTAAGA-TCT
1 GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCT-GGGAAGTAAGATTC-
* * * **
43827388 GCTGTTGTAGCTTTAATCTGTCTCACCGCAACGCCGGGGAAGTAAGATTCATTGTTGTAGCTTTA
64 ACTGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTA
* * ** * **
43827453 ACCTACTT-CACTGCAATGTCGG
129 ATCT-GTTCCACTGCACCGCCAA
** * * * *
43827475 GGAAGTAAGATTCACTGTTGTAGCTTTAATCTGCTTCACTGCCACGCCGGGGAAGTAAGATTCAC
1 GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCTGGGAAGTAAGATTCAC
43827540 TGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
66 TGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
43827605 CTGTTCCACTGCACCGCCAA
131 CTGTTCCACTGCACCGCCAA
43827625 GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCTGGGAAGTAAGATTCAC
1 GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCTGGGAAGTAAGATTCAC
43827690 TGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
66 TGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
43827755 CTGTTCCACTGCACCGCCAA
131 CTGTTCCACTGCACCGCCAA
43827775 GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCTGGGAAGTAAGATTCAC
1 GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCTGGGAAGTAAGATTCAC
43827840 TGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
66 TGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
43827905 CTGTTCCACTGCACCGCCAA
131 CTGTTCCACTGCACCGCCAA
43827925 GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCTGGGAAGTAAGATTCAC
1 GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCTGGGAAGTAAGATTCAC
43827990 TGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
66 TGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
43828055 CTGTTCCACTGCACCGCCAA
131 CTGTTCCACTGCACCGCCAA
43828075 GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCTGGGAAGTAAGATTCAC
1 GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCTGGGAAGTAAGATTCAC
43828140 TGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
66 TGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
43828205 CTGTTCCACTGCACCGCCAA
131 CTGTTCCACTGCACCGCCAA
43828225 GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCTGGGAAGTAAGATTCAC
1 GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCTGGGAAGTAAGATTCAC
43828290 TGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
66 TGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
*
43828355 CTGTTCCACTGCACCGCCAG
131 CTGTTCCACTGCACCGCCAA
*** * * * *
43828375 GGAAGTAAGATTCATTGTTGTAGCTTTAATCTATTTCAATGCCACGCC-GGGAAGTAAGATTCAC
1 GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCTGGGAAGTAAGATTCAC
43828439 TGTTGTAGCTTTAATCTGTT
66 TGTTGTAGCTTTAATCTGTT
43828459 CCACTACAAT
Statistics
Matches: 947, Mismatches: 34, Indels: 7
0.96 0.03 0.01
Matches are distributed among these distances:
149 38 0.04
150 906 0.96
151 3 0.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (150 bp):
GGAAGTAAGATTTGCTGTTGTAGCCTTAATCTGTTTCACTGCAACGCCTGGGAAGTAAGATTCAC
TGTTGTAGCTTTAATCTGTTTCACCGTAACGCCGGGGAAGTAAGATTCGCTGTTGTAGCTTTAAT
CTGTTCCACTGCACCGCCAA
Found at i:43829630 original size:47 final size:47
Alignment explanation
Indices: 43829547--43829636 Score: 108
Period size: 47 Copynumber: 1.9 Consensus size: 47
43829537 CCTTTCCTGT
* * ** *
43829547 TGATTCAAGTATAGTAAGATCACCGTATGCCCCATTCTGATCACTGC
1 TGATTCAAGTATAGCAAGACCACCACATGCCCCATTCTAATCACTGC
* * *
43829594 TGATTCAGGTATAGCAAGACCACCACATGTCTCATTCTAATCA
1 TGATTCAAGTATAGCAAGACCACCACATGCCCCATTCTAATCA
43829637 ACATTTGAGT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
47 35 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (47 bp):
TGATTCAAGTATAGCAAGACCACCACATGCCCCATTCTAATCACTGC
Found at i:43829787 original size:7 final size:6
Alignment explanation
Indices: 43829766--43829812 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
43829756 GACCTCTCCA
* *
43829766 TTTTCT TTTTCT TTTTCTT TTTTCT TTATT-T TTTTAT TTTTAT TTTT
1 TTTTCT TTTTCT TTTTC-T TTTTCT TT-TTCT TTTTCT TTTTCT TTTT
43829813 TTGACTCAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
5 2 0.05
6 28 0.74
7 8 0.21
ACGTcount: A:0.06, C:0.09, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:43829790 original size:19 final size:19
Alignment explanation
Indices: 43829766--43829806 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
43829756 GACCTCTCCA
*
43829766 TTTTCTTT-TTCTTTTTCTT
1 TTTTCTTTATT-TTTTTATT
43829785 TTTTCTTTATTTTTTTATT
1 TTTTCTTTATTTTTTTATT
43829804 TTT
1 TTT
43829807 ATTTTTTTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTTCTTTATTTTTTTATT
Found at i:43830762 original size:6 final size:6
Alignment explanation
Indices: 43830753--43830792 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
43830743 TTGGTCTCTC
*
43830753 CTTTTT C-TTTT CTTTTT C-TTCT CTTTTT C-TTTT CTTTTT C
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT C
43830793 ATCATTTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
5 14 0.48
6 15 0.52
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (6 bp):
CTTTTT
Found at i:43830769 original size:11 final size:11
Alignment explanation
Indices: 43830753--43830792 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
43830743 TTGGTCTCTC
43830753 CTTTTTCTTTT
1 CTTTTTCTTTT
*
43830764 CTTTTTCTTCT
1 CTTTTTCTTTT
43830775 CTTTTTCTTTT
1 CTTTTTCTTTT
43830786 CTTTTTC
1 CTTTTTC
43830793 ATCATTTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (11 bp):
CTTTTTCTTTT
Found at i:43830870 original size:13 final size:12
Alignment explanation
Indices: 43830820--43830878 Score: 52
Period size: 13 Copynumber: 4.8 Consensus size: 12
43830810 TTCATGTTTT
43830820 TTTTCTTTGAAATA
1 TTTT-TTTG-AATA
43830834 TTTTTTTG-AT-
1 TTTTTTTGAATA
43830844 TTTGATTTTG-ATA
1 TTT--TTTTGAATA
43830857 TTTTTTTGAAATA
1 TTTTTTTG-AATA
43830870 TTTTTTTGA
1 TTTTTTTGA
43830879 TCGGATCTGA
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
10 3 0.08
11 7 0.17
12 8 0.20
13 18 0.45
14 4 0.10
ACGTcount: A:0.22, C:0.02, G:0.10, T:0.66
Consensus pattern (12 bp):
TTTTTTTGAATA
Found at i:43835006 original size:16 final size:16
Alignment explanation
Indices: 43834985--43835015 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
43834975 CCCCAATAGA
43834985 GTTTCTATTGATATGG
1 GTTTCTATTGATATGG
43835001 GTTTCTATTGATATG
1 GTTTCTATTGATATG
43835016 TATGAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.06, G:0.23, T:0.52
Consensus pattern (16 bp):
GTTTCTATTGATATGG
Found at i:43835035 original size:28 final size:28
Alignment explanation
Indices: 43834995--43835052 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
43834985 GTTTCTATTG
43834995 ATATGGGTTTCTATTGATATGTATGAAA
1 ATATGGGTTTCTATTGATATGTATGAAA
43835023 ATATGGGTTTCTATTGATATGTATGAAA
1 ATATGGGTTTCTATTGATATGTATGAAA
43835051 AT
1 AT
43835053 CGGTTAGTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.43
Consensus pattern (28 bp):
ATATGGGTTTCTATTGATATGTATGAAA
Found at i:43835567 original size:25 final size:25
Alignment explanation
Indices: 43835511--43835568 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
43835501 CTTATGAGAA
*
43835511 TCCCGATATTTGGCTATCATGAGTT
1 TCCCGATATTTGGCTATCATGAGCT
** * *
43835536 TTTCGATATTTGGCTCTCTTGAGCT
1 TCCCGATATTTGGCTATCATGAGCT
43835561 TCCCGATA
1 TCCCGATA
43835569 AATGGCTCGC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.17, C:0.22, G:0.19, T:0.41
Consensus pattern (25 bp):
TCCCGATATTTGGCTATCATGAGCT
Found at i:43835658 original size:50 final size:50
Alignment explanation
Indices: 43835555--43835665 Score: 118
Period size: 50 Copynumber: 2.2 Consensus size: 50
43835545 TTGGCTCTCT
* *
43835555 TGAGCTTCCCGATAAATGGCTCGCAAGAGCTTCCCATTACTTAGATCAAA
1 TGAGCTTCCTGATAAATGGCTCGCAAGAGCTTCCCATTACATAGATCAAA
* * * * *
43835605 TGAGCTTCCTGTTATATGGCTCG-AAGGAGCTTCTCATTTACAT-GCTCATA
1 TGAGCTTCCTGATAAATGGCTCGCAA-GAGCTTCCCA-TTACATAGATCAAA
43835655 TGAGCATTCCT
1 TGAGC-TTCCT
43835666 AAATATGAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
49 2 0.04
50 39 0.76
51 10 0.20
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (50 bp):
TGAGCTTCCTGATAAATGGCTCGCAAGAGCTTCCCATTACATAGATCAAA
Found at i:43840112 original size:114 final size:113
Alignment explanation
Indices: 43839565--43840540 Score: 1228
Period size: 114 Copynumber: 8.6 Consensus size: 113
43839555 CGGCGTTTCC
* * * * *
43839565 AGAAAGCGCCGC-AAAAAACCTAAGCACAACGACGCCGTTTTGTGAACTTCTGGGGATTTTGCGG
1 AGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGAGCTT-TCGGGATTTAGCGG
* *
43839629 CGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAG-TGAGTTTTTG
65 CGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTG
* * * * *
43839677 -GCAAAGCACTGCAAAAAAAAATAAGCCCAAAGACGCCGTTTTGTGAGCTTTCGAGGATTTAACG
1 AG-AAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGAGCTTTCG-GGATTTAGCG
* *
43839741 GCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAG-TGAGTTTTTG
64 GCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTG
* * * * *
43839790 -GCAAAGCACTGCAAAAAAAAATAAGCCCAAAGACGCCGTTTTGTGAGCTTTCGAGGATTTAACG
1 AG-AAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGAGCTTTCG-GGATTTAGCG
* *
43839854 GCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGTTTTAGCGGCATTTTTG
64 GCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTG
* * * * * *
43839904 AGAAAGCGCCGCAAAAAATC-TAAGCACAACGATGTCGTTTTCTGAGCTTTCGGGGATTTAACGG
1 AGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGAGCTTTC-GGGATTTAGCGG
* *
43839968 CGTTTTTAAGAAAGTGCCACTAATGCTCAGGGCTTTAGCGGCGTTTTTG
65 CGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTG
* * * * * *
43840017 AGAAATCGCCGCAAAAAAACATAATCCCAATGACGCTGTTTTGTGAGTTTTCAGGGATTTAGTGG
1 AGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGAGCTTTC-GGGATTTAGCGG
* *
43840082 CATTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCATTTTTG
65 CGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTG
* * * ** *
43840131 -GCAAAGCACCGCAAAAAAACAAAAGCCCAACGATGTTGTTTTGTGAGCTTTCGGGGATTTAGTG
1 AG-AAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGAGCTTTC-GGGATTTAGCG
* * *
43840195 GCGTTTTTAAGGAAGCGCTGCTAATGCTCAGGGTTTTAGCGGCGTTTTTG
64 GCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTG
* *
43840245 AGAAAGCACCGCAAAAAAAAACATAAGCCCAACGTCGCCGTTTTGTGAGCTTTCGAGGATTTAGC
1 AGAAAGCGCCGC--AAAAAAACATAAGCCCAACGACGCCGTTTTGTGAGCTTTCG-GGATTTAGC
* ** *
43840310 GTCGTTTTTAAGAAAGCGCTACTAATGCTCAGGGCTTTAGTGGCGTTTTTG
63 GGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTG
* * * * *
43840361 GGAAAGCGCCCCAAAAAAACATAGGCCCAACGACGTCGTTTTGTGAACTTTCGGTGATTTAGCGG
1 AGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGAGCTTTCGG-GATTTAGCGG
* * *
43840426 CGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGTTTTATCGGCGTTTTTG
65 CGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTG
*
43840475 ACAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGAGCTTTCGGGGATTTAGCGG
1 AGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGAGCTTTC-GGGATTTAGCGG
43840540 C
65 C
43840541 CAAAAATGCT
Statistics
Matches: 761, Mismatches: 89, Indels: 26
0.87 0.10 0.03
Matches are distributed among these distances:
111 1 0.00
112 10 0.01
113 293 0.39
114 354 0.47
115 5 0.01
116 98 0.13
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (113 bp):
AGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGAGCTTTCGGGATTTAGCGGC
GTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTG
Found at i:43840453 original size:344 final size:339
Alignment explanation
Indices: 43839565--43840540 Score: 1316
Period size: 344 Copynumber: 2.9 Consensus size: 339
43839555 CGGCGTTTCC
* * * * *
43839565 AGAAAGCGCCGCAAAAAACCTAAGCACAACGACGCCGTTTTGTGAAC-TTCTGGGGATTTTGCGG
1 AGAAAGCACCGCAAAAAAACTAAGCACAACGTCGCCGTTTTGTGAGCTTTC-GGGGATTTAGCGG
* * * * *
43839629 CGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGT-GAGTTTTTGGCAAAGCACTGCAAAA
65 CGTTTTTAAGAAAGCGCCACTAATGCTCAGGGCTTTAGTGGCGTTTTTGGGAAAGCGCCGCAAAA
* *
43839693 AAAAATAAGCCCAAAGACGCCGTTTTGTGAGCTTTCGAGGATTTAACGGCGTTTTTAAGAAAGCG
130 AAACATAAGCCCAAAGACG-CGTTTTGTGAGCTTTCG-GGATTTAGCGGCGTTTTTAAGAAAGCG
* *
43839758 CCGCTAATGCTCAGGGCTTTAG-TG-AGTTTTTGGCAAAGCACTGCAAAAAAA-AATAAGCCCAA
193 CCGCTAATGCTCAGGGCTTTAGCGGCA-TTTTTGGCAAAGCACCGCAAAAAAACAA-AAGCCCAA
* * *
43839820 AGACGCCGTTTTGTGAGCTTTCGAGGATTTAACGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAG
256 CGACGCCGTTTTGTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAG
43839885 GGTTTTAGCGGCATTTTTG
321 GGTTTTAGCGGCATTTTTG
* * * * *
43839904 AGAAAGCGCCGCAAAAAATCTAAGCACAACGAT-GTCGTTTTCTGAGCTTTCGGGGATTTAACGG
1 AGAAAGCACCGCAAAAAAACTAAGCACAACG-TCGCCGTTTTGTGAGCTTTCGGGGATTTAGCGG
* * * *
43839968 CGTTTTTAAGAAAGTGCCACTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGAAATCGCCGCAAAA
65 CGTTTTTAAGAAAGCGCCACTAATGCTCAGGGCTTTAGTGGCGTTTTTGGGAAAGCGCCGCAAAA
* * * * *
43840033 AAACATAATCCCAATGACGCTGTTTTGTGAGTTTTCAGGGATTTAGTGGCATTTTTAAGAAAGCG
130 AAACATAAGCCCAAAGACGC-GTTTTGTGAGCTTTC-GGGATTTAGCGGCGTTTTTAAGAAAGCG
43840098 CCGCTAATGCTCAGGGCTTTAGCGGCATTTTTGGCAAAGCACCGCAAAAAAACAAAAGCCCAACG
193 CCGCTAATGCTCAGGGCTTTAGCGGCATTTTTGGCAAAGCACCGCAAAAAAACAAAAGCCCAACG
* ** * * *
43840163 ATGTTGTTTTGTGAGCTTTCGGGGATTTAGTGGCGTTTTTAAGGAAGCGCTGCTAATGCTCAGGG
258 ACGCCGTTTTGTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGG
*
43840228 TTTTAGCGGCGTTTTTG
323 TTTTAGCGGCATTTTTG
* *
43840245 AGAAAGCACCGCAAAAAAAAACATAAGCCCAACGTCGCCGTTTTGTGAGCTTTCGAGGATTTAGC
1 AGAAAGCACCGC--AAAAAAAC-TAAGCACAACGTCGCCGTTTTGTGAGCTTTCGGGGATTTAGC
* * *
43840310 GTCGTTTTTAAGAAAGCGCTACTAATGCTCAGGGCTTTAGTGGCGTTTTTGGGAAAGCGCCCCAA
63 GGCGTTTTTAAGAAAGCGCCACTAATGCTCAGGGCTTTAGTGGCGTTTTTGGGAAAGCGCCGCAA
* * * *
43840375 AAAAACATAGGCCCAACGACGTCGTTTTGTGAACTTTCGGTGATTTAGCGGCGTTTTTAAGGAAG
128 AAAAACATAAGCCCAAAGACG-CGTTTTGTGAGCTTTCGG-GATTTAGCGGCGTTTTTAAGAAAG
* * * * * *
43840440 CGCCGCTAATGCTCAGGGTTTTATCGGCGTTTTTGACAAAGCGCCGCAAAAAAACATAAGCCCAA
191 CGCCGCTAATGCTCAGGGCTTTAGCGGCATTTTTGGCAAAGCACCGCAAAAAAACAAAAGCCCAA
43840505 CGACGCCGTTTTGTGAGCTTTCGGGGATTTAGCGGC
256 CGACGCCGTTTTGTGAGCTTTCGGGGATTTAGCGGC
43840541 CAAAAATGCT
Statistics
Matches: 556, Mismatches: 67, Indels: 23
0.86 0.10 0.04
Matches are distributed among these distances:
339 89 0.16
340 98 0.18
341 119 0.21
342 3 0.01
343 10 0.02
344 236 0.42
345 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (339 bp):
AGAAAGCACCGCAAAAAAACTAAGCACAACGTCGCCGTTTTGTGAGCTTTCGGGGATTTAGCGGC
GTTTTTAAGAAAGCGCCACTAATGCTCAGGGCTTTAGTGGCGTTTTTGGGAAAGCGCCGCAAAAA
AACATAAGCCCAAAGACGCGTTTTGTGAGCTTTCGGGATTTAGCGGCGTTTTTAAGAAAGCGCCG
CTAATGCTCAGGGCTTTAGCGGCATTTTTGGCAAAGCACCGCAAAAAAACAAAAGCCCAACGACG
CCGTTTTGTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGTTT
TAGCGGCATTTTTG
Found at i:43840622 original size:40 final size:41
Alignment explanation
Indices: 43840545--43840627 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
43840535 AGCGGCCAAA
* * *
43840545 AATGCTGGGGGCTTTGGCGGCGTTTTTGAAAAAGCGCCGCT
1 AATGCTGGGGGATTTAGCGACGTTTTTGAAAAAGCGCCGCT
*
43840586 AATGCTGGGGGATTTAGCGACTTTTTTG-AAAAGCGCCGCT
1 AATGCTGGGGGATTTAGCGACGTTTTTGAAAAAGCGCCGCT
43840626 AA
1 AA
43840628 AAATATTTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
40 14 0.37
41 24 0.63
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.28
Consensus pattern (41 bp):
AATGCTGGGGGATTTAGCGACGTTTTTGAAAAAGCGCCGCT
Found at i:43840911 original size:22 final size:22
Alignment explanation
Indices: 43840867--43840912 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
43840857 GAGTTCATAT
* *
43840867 TTTAAGGTTTAGGGAGTATGGG
1 TTTAAGGATTAGGGAGTAGGGG
* *
43840889 TTTAAGGATTATGGATTAGGGG
1 TTTAAGGATTAGGGAGTAGGGG
43840911 TT
1 TT
43840913 GGGATTTAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.37, T:0.39
Consensus pattern (22 bp):
TTTAAGGATTAGGGAGTAGGGG
Found at i:43840954 original size:23 final size:24
Alignment explanation
Indices: 43840924--43840974 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
43840914 GGATTTAAGA
*
43840924 TTTAGGGGCTAGA-GGGTTAGGGG
1 TTTAGGGGCTAGACGGGCTAGGGG
* *
43840947 TTTAGGGGTTAGACGTGCTAGGGG
1 TTTAGGGGCTAGACGGGCTAGGGG
43840971 TTTA
1 TTTA
43840975 AAGTTAGGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.18, C:0.06, G:0.45, T:0.31
Consensus pattern (24 bp):
TTTAGGGGCTAGACGGGCTAGGGG
Found at i:43841189 original size:15 final size:15
Alignment explanation
Indices: 43841155--43841198 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
43841145 TTATATTTTA
* *
43841155 AGATTTAGAGAGTAT
1 AGATTTAGGGATTAT
*
43841170 GGATTTAGGGATTAT
1 AGATTTAGGGATTAT
43841185 AGA-TTAGGGATTAT
1 AGATTTAGGGATTAT
43841199 GGTTTAATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 11 0.44
15 14 0.56
ACGTcount: A:0.34, C:0.00, G:0.30, T:0.36
Consensus pattern (15 bp):
AGATTTAGGGATTAT
Found at i:43841262 original size:22 final size:23
Alignment explanation
Indices: 43841237--43841296 Score: 58
Period size: 22 Copynumber: 2.8 Consensus size: 23
43841227 AGGTTTAGGG
43841237 GTTAGGGGTTTAGAGGTTA-GAT
1 GTTAGGGGTTTAGAGGTTAGGAT
* *
43841259 GTTAGTGGTTAAGA-GTTATGGAT
1 GTTAGGGGTTTAGAGGTTA-GGAT
43841282 -TTA-GGGTTTAG-GGTT
1 GTTAGGGGTTTAGAGGTT
43841297 TCAGGGGTCG
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
21 13 0.42
22 15 0.48
23 3 0.10
ACGTcount: A:0.22, C:0.00, G:0.38, T:0.40
Consensus pattern (23 bp):
GTTAGGGGTTTAGAGGTTAGGAT
Found at i:43845473 original size:28 final size:28
Alignment explanation
Indices: 43845405--43845558 Score: 213
Period size: 28 Copynumber: 5.5 Consensus size: 28
43845395 CATGAGATTG
* * *
43845405 GCACTAAGTGTGCGGGTTTAAAT-TGTACA
1 GCACTAAGTGTGCGAGTTTGATTATGT--A
43845434 GCACTAAGTGTGCGAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
43845462 GCACTAAGTGTGCGAGCTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
43845490 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
43845518 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATGTA
*
43845545 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
43845559 GACTTAATAT
Statistics
Matches: 117, Mismatches: 7, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
27 24 0.21
28 70 0.60
29 20 0.17
30 3 0.03
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATGTA
Found at i:43851024 original size:23 final size:22
Alignment explanation
Indices: 43851003--43851049 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
43850993 TCAGATTTCG
43851003 CCGA-CTTCATTTCCCCAATTT
1 CCGATCTTCATTTCCCCAATTT
*
43851024 CCTATCTTCATTTCCCCTAAATTT
1 CCGATCTTCATTTCCCC--AATTT
43851048 CC
1 CC
43851050 CTAGGTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 3 0.14
22 12 0.55
24 7 0.32
ACGTcount: A:0.19, C:0.38, G:0.02, T:0.40
Consensus pattern (22 bp):
CCGATCTTCATTTCCCCAATTT
Found at i:43853287 original size:9 final size:9
Alignment explanation
Indices: 43853260--43853340 Score: 69
Period size: 9 Copynumber: 9.0 Consensus size: 9
43853250 GTTCAAATTT
43853260 CATAACTTA
1 CATAACTTA
* *
43853269 CGTAATTTA
1 CATAACTTA
43853278 CATAACTTA
1 CATAACTTA
43853287 CATAA-TT-
1 CATAACTTA
43853294 CATAACTTA
1 CATAACTTA
*
43853303 CATAATTTA
1 CATAACTTA
* *
43853312 AATTTATA-ATA
1 CA--TA-ACTTA
43853323 CATAACTTA
1 CATAACTTA
43853332 CATAACTTA
1 CATAACTTA
43853341 TTAATATTTA
Statistics
Matches: 57, Mismatches: 9, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
7 5 0.09
8 5 0.09
9 41 0.72
11 5 0.09
12 1 0.02
ACGTcount: A:0.44, C:0.16, G:0.01, T:0.38
Consensus pattern (9 bp):
CATAACTTA
Found at i:43853299 original size:16 final size:16
Alignment explanation
Indices: 43853258--43853336 Score: 83
Period size: 16 Copynumber: 5.0 Consensus size: 16
43853248 AAGTTCAAAT
*
43853258 TTCATAACTTACGTAA
1 TTCATAACTTACATAA
43853274 TTTACATAACTTACATAA
1 -TT-CATAACTTACATAA
43853292 TTCATAACTTACATAA
1 TTCATAACTTACATAA
* *
43853308 TT--TAAATT-TATAA
1 TTCATAACTTACATAA
*
43853321 TACATAACTTACATAA
1 TTCATAACTTACATAA
43853337 CTTATTAATA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
13 5 0.10
14 5 0.10
15 5 0.10
16 20 0.38
17 4 0.08
18 13 0.25
ACGTcount: A:0.44, C:0.15, G:0.01, T:0.39
Consensus pattern (16 bp):
TTCATAACTTACATAA
Found at i:43853365 original size:19 final size:18
Alignment explanation
Indices: 43853341--43853394 Score: 69
Period size: 17 Copynumber: 3.1 Consensus size: 18
43853331 ACATAACTTA
43853341 TTAATATTTATATATAGTT
1 TTAATATTTATATATA-TT
43853360 TTAATA--TATATAT-TT
1 TTAATATTTATATATATT
*
43853375 TTAAAATTTATATATATT
1 TTAATATTTATATATATT
43853393 TT
1 TT
43853395 TAAAAATTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
15 7 0.23
17 14 0.45
18 4 0.13
19 6 0.19
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TTAATATTTATATATATT
Found at i:43853369 original size:15 final size:15
Alignment explanation
Indices: 43853349--43853378 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
43853339 TATTAATATT
43853349 TATATATAGTTTTAA
1 TATATATAGTTTTAA
*
43853364 TATATATATTTTTAA
1 TATATATAGTTTTAA
43853379 AATTTATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (15 bp):
TATATATAGTTTTAA
Found at i:43853387 original size:21 final size:20
Alignment explanation
Indices: 43853364--43853402 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
43853354 ATAGTTTTAA
43853364 TATATATATTTTT-AAAATT
1 TATATATATTTTTAAAAATT
43853383 TATATATATTTTTAAAAATT
1 TATATATATTTTTAAAAATT
43853403 GATACATTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TATATATATTTTTAAAAATT
Found at i:43853455 original size:23 final size:22
Alignment explanation
Indices: 43853404--43853467 Score: 55
Period size: 23 Copynumber: 3.0 Consensus size: 22
43853394 TTAAAAATTG
43853404 ATACATTACATAACTTACATAAC
1 ATACA-TACATAACTTACATAAC
**
43853427 CCACATACATAAACTTACAT---
1 ATACATACAT-AACTTACATAAC
*
43853447 ATA-ATACATAACTTATATAAC
1 ATACATACATAACTTACATAAC
43853468 TTAAATTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 10
0.68 0.11 0.21
Matches are distributed among these distances:
18 8 0.25
19 6 0.19
20 1 0.03
22 5 0.16
23 12 0.38
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (22 bp):
ATACATACATAACTTACATAAC
Found at i:43853546 original size:21 final size:21
Alignment explanation
Indices: 43853521--43853576 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 21
43853511 ATCATATCAC
43853521 AACTTACATAACCAACATAAT
1 AACTTACATAACCAACATAAT
* *
43853542 GACTTACATAATAACCTACATAAT
1 AACTTAC---ATAACCAACATAAT
43853566 AACTTACATAA
1 AACTTACATAA
43853577 TAATACATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 10 0.34
24 19 0.66
ACGTcount: A:0.50, C:0.21, G:0.02, T:0.27
Consensus pattern (21 bp):
AACTTACATAACCAACATAAT
Found at i:43853552 original size:12 final size:12
Alignment explanation
Indices: 43853535--43853579 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
43853525 TACATAACCA
*
43853535 ACATAATGACTT
1 ACATAATAACTT
*
43853547 ACATAATAACCT
1 ACATAATAACTT
43853559 ACATAATAACTT
1 ACATAATAACTT
43853571 ACATAATAA
1 ACATAATAA
43853580 TACATAACCT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.29
Consensus pattern (12 bp):
ACATAATAACTT
Done.