Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 141 of 153
Found at i:44231339 original size:40 final size:41
Alignment explanation
Indices: 44231284--44231405 Score: 142
Period size: 40 Copynumber: 3.0 Consensus size: 41
44231274 TAATTTTTTT
* *
44231284 GCGGCGTTTCTCAAAAAGCGA-CGCTAATGGTCGACCTATA
1 GCGGCGTTTTTCAAAAAGCGACCGCTAATGCTCGACCTATA
* *
44231324 GCGGCGTTTTTCAAAAAG-TACCGCTAATGCTCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGACCGCTAATGCTCGACCTATA
* ** * *
44231364 GCGGCATTTTTCAAAAAGCG-TTGTTAATGCTCGATCTATA
1 GCGGCGTTTTTCAAAAAGCGACCGCTAATGCTCGACCTATA
44231404 GC
1 GC
44231406 AACATATTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (41 bp):
GCGGCGTTTTTCAAAAAGCGACCGCTAATGCTCGACCTATA
Found at i:44231352 original size:155 final size:154
Alignment explanation
Indices: 44231015--44231383 Score: 526
Period size: 155 Copynumber: 2.4 Consensus size: 154
44231005 AATGTTTTTT
* * * * *
44231015 GCGGCGTTTTTTATAAAGTGTCGCTAAAGCTCGATCTATAGCGAT-GTTTTTCAAAAAGTGCCGC
1 GCGGCGTTTTTCAAAAAGTGCCGCTAATGCTCGATCTATAGCG-TCGTTTTTCAAAAAGCGCCGC
*
44231079 TAATACCACTAAAACTCAACATAAAACGACGCTTTGTGCTTAATTTTTTTGCGGCGATTTTCAAA
65 TAATACCACTAAAACTCAACATAAAACGACGCGTTGTGCTTAATTTTTTTGCGGCGATTTTCAAA
* * *
44231144 AAGTGCCGCTCATGGTCGACCTATA
130 AAGCGACGCTAATGGTCGACCTATA
* * *
44231169 GCGACATTTTTCAAAAAGTGCCACTAATGCTCGATCTATAGCGTCGTTTTTCAAAAAGCGCCGCT
1 GCGGCGTTTTTCAAAAAGTGCCGCTAATGCTCGATCTATAGCGTCGTTTTTCAAAAAGCGCCGCT
* * * *
44231234 AATGCCACTAAAGCTCAACATAAAACGATGACGTTGTGGTTAATTTTTTTGCGGCG-TTTCTCAA
66 AATACCACTAAAACTCAACATAAAACGACG-CGTTGTGCTTAATTTTTTTGCGGCGATTT-TCAA
44231298 AAAGCGACGCTAATGGTCGACCTATA
129 AAAGCGACGCTAATGGTCGACCTATA
* * *
44231324 GCGGCGTTTTTCAAAAAGTACCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAAAGCG
1 GCGGCGTTTTTCAAAAAGTGCCGCTAATGCTCGATCTATAGCGTCGTTTTTCAAAAAGCG
44231384 TTGTTAATGC
Statistics
Matches: 190, Mismatches: 22, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
153 1 0.01
154 85 0.45
155 104 0.55
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (154 bp):
GCGGCGTTTTTCAAAAAGTGCCGCTAATGCTCGATCTATAGCGTCGTTTTTCAAAAAGCGCCGCT
AATACCACTAAAACTCAACATAAAACGACGCGTTGTGCTTAATTTTTTTGCGGCGATTTTCAAAA
AGCGACGCTAATGGTCGACCTATA
Found at i:44234406 original size:27 final size:26
Alignment explanation
Indices: 44234287--44234409 Score: 110
Period size: 27 Copynumber: 4.8 Consensus size: 26
44234277 AGTTTATCCT
*
44234287 ATAGGGGTATTTCGGTAATTTTACCC
1 ATAGGGGTATTTTGGTAATTTTACCC
* *
44234313 AT----CTATTTTGTTAATTTTACCC
1 ATAGGGGTATTTTGGTAATTTTACCC
* ** *
44234335 ATCAGGGGTATTTCGACAATTTTACCT
1 AT-AGGGGTATTTTGGTAATTTTACCC
* * *
44234362 ATCGCGGTATTTTAGTAATTTTACCC
1 ATAGGGGTATTTTGGTAATTTTACCC
44234388 ATTAGGGGTATTTTGGTAATTT
1 A-TAGGGGTATTTTGGTAATTT
44234410 AACAAACTTT
Statistics
Matches: 73, Mismatches: 18, Indels: 11
0.72 0.18 0.11
Matches are distributed among these distances:
22 19 0.26
26 20 0.27
27 34 0.47
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.44
Consensus pattern (26 bp):
ATAGGGGTATTTTGGTAATTTTACCC
Found at i:44234409 original size:53 final size:49
Alignment explanation
Indices: 44234288--44234409 Score: 147
Period size: 53 Copynumber: 2.4 Consensus size: 49
44234278 GTTTATCCTA
44234288 TAGGGGTATTTCGGTAATTTTACCCATCTATTTTGTTAATTTTACCCAT
1 TAGGGGTATTTCGGTAATTTTACCCATCTATTTTGTTAATTTTACCCAT
* ** *
44234337 CAGGGGTATTTCGACAATTTTACCTATCGCGGTATTTTAG-TAATTTTACCCAT
1 TAGGGGTATTTCGGTAATTTTACCCAT--C--TATTTT-GTTAATTTTACCCAT
*
44234390 TAGGGGTATTTTGGTAATTT
1 TAGGGGTATTTCGGTAATTT
44234410 AACAAACTTT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
49 23 0.38
51 1 0.02
53 35 0.58
54 1 0.02
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.44
Consensus pattern (49 bp):
TAGGGGTATTTCGGTAATTTTACCCATCTATTTTGTTAATTTTACCCAT
Found at i:44245706 original size:232 final size:230
Alignment explanation
Indices: 44245299--44245986 Score: 1052
Period size: 225 Copynumber: 3.0 Consensus size: 230
44245289 AGCAACACTG
* *
44245299 AAAAATTTTGAAAACCAAATGGGTTAGATAGCTACGGATCTACGTAATAGACCACAATGAACCTT
1 AAAAATTTGGAAAACCAAATGGGTTAGATAGCTACGGAGCTACGTAATAGACCACAATGAACCTT
* *
44245364 GCCGAGCGATACTGAGAATCCAAGAAATTTTGGTAAAGAACATATCAAGGTAGTGGCATTATAGA
66 GCCGAGCGATACTGAGAATCCAAGAAATTTGGGTAAAGAACATATCAAGGCAGTGGCATTATAGA
* *
44245429 ATGGTAAAATTCTAGAACCCCGATTAATTGGTGTCGAAGATAAGCCCGTTGAGAAGAATCAACCA
131 GTGGTAAAATTCTAGAACCCCGATTGATTGGTGTCGAAGATAAGCCCGTTGAGAAGAATCAACCA
*
44245494 GCTGTTGAAGTTCCGGTACCAAAGGAATCAGAATCTA
196 GCTGTTGAAGTTCCAG-ACC-AAGGAATCAGAATCTA
*
44245531 GAAAATTTGGAAAACCAAATGGGTTAGATAGCTACGGAGCTACGTAATAGACCACAATGAACCTT
1 AAAAATTTGGAAAACCAAATGGGTTAGATAGCTACGGAGCTACGTAATAGACCACAATGAACCTT
44245596 GCCGAGCGATACTGAGAATCCAAGAAATTTGGGTAAAGAACATATCAAGGCAGTGGCATTATAGA
66 GCCGAGCGATACTGAGAATCCAAGAAATTTGGGTAAAGAACATATCAAGGCAGTGGCATTATAGA
* * *
44245661 GTGGTAAAATTCTAGAACCCTGATTGATTGGTGTCGAAGATAAGCCCGTTGATTTAAAGAAT-GA
131 GTGGTAAAATTCTAGAACCCCGATTGATTGGTGTCGAAGATAAGCCCGTTGA---GAAGAATCAA
* * ** * *
44245725 --TGCT-TTG-ATTTAAAG-CCAAGCAGT-A-ACA-CTA
193 CCAGCTGTTGAAGTTCCAGACCAAGGAATCAGA-ATCTA
*
44245756 AAAAATTTGGAAAACCAAATGGGTTAGATAGATACGGAGCTACGTAATAGACCACAATGAACCTT
1 AAAAATTTGGAAAACCAAATGGGTTAGATAGCTACGGAGCTACGTAATAGACCACAATGAACCTT
* * *
44245821 GCCGAGCGATACTGAGAATCCATGAAATTTGGGTAAATAACATATCAAGGCAGTGGCATTATAAA
66 GCCGAGCGATACTGAGAATCCAAGAAATTTGGGTAAAGAACATATCAAGGCAGTGGCATTATAGA
44245886 GTGGTAAAATTCTAGAACCCCGATTGATTGGTGTCGAAGATAAGCCCGTTGAGAAGAATCAACCA
131 GTGGTAAAATTCTAGAACCCCGATTGATTGGTGTCGAAGATAAGCCCGTTGAGAAGAATCAACCA
44245951 GCTGTTGAAGTTCCAGCACCGAAGGAATCAGAATCT
196 GCTGTTGAAGTTCCAG-ACC-AAGGAATCAGAATCT
44245987 GCAAAGTTTG
Statistics
Matches: 410, Mismatches: 31, Indels: 30
0.87 0.07 0.06
Matches are distributed among these distances:
222 6 0.01
223 1 0.00
225 183 0.45
226 5 0.01
227 10 0.02
228 2 0.00
229 2 0.00
230 9 0.02
231 5 0.01
232 180 0.44
234 1 0.00
235 6 0.01
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.24
Consensus pattern (230 bp):
AAAAATTTGGAAAACCAAATGGGTTAGATAGCTACGGAGCTACGTAATAGACCACAATGAACCTT
GCCGAGCGATACTGAGAATCCAAGAAATTTGGGTAAAGAACATATCAAGGCAGTGGCATTATAGA
GTGGTAAAATTCTAGAACCCCGATTGATTGGTGTCGAAGATAAGCCCGTTGAGAAGAATCAACCA
GCTGTTGAAGTTCCAGACCAAGGAATCAGAATCTA
Found at i:44253648 original size:50 final size:50
Alignment explanation
Indices: 44253590--44253717 Score: 123
Period size: 49 Copynumber: 2.6 Consensus size: 50
44253580 TATTGAGGTT
* * *
44253590 ATGAGAGGTTCCATGTAAGACCATGTCTGTGACACGGCGTTGGTACCGAG
1 ATGAGAGGTTCCATGTAAGACCATGTCTGTGACACGGCATGGGCACCGAG
** * * * *
44253640 ATGAGAGG-TCCCCGTAAGACTATGTTTGTGACATGGCATGGGCACCGAT
1 ATGAGAGGTTCCATGTAAGACCATGTCTGTGACACGGCATGGGCACCGAG
** * * *
44253689 ATGAGAACTCCCATGTAAGTCCATATCTG
1 ATGAGAGGTTCCATGTAAGACCATGTCTG
44253718 GGATATGACA
Statistics
Matches: 59, Mismatches: 18, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
49 38 0.64
50 21 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (50 bp):
ATGAGAGGTTCCATGTAAGACCATGTCTGTGACACGGCATGGGCACCGAG
Found at i:44256130 original size:20 final size:18
Alignment explanation
Indices: 44256093--44256133 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 18
44256083 CGAAGGTTGA
44256093 TATTTTTGTTTTTTTATT
1 TATTTTTGTTTTTTTATT
44256111 TATTTTTAGTTTTATTTATT
1 TATTTTT-GTTTT-TTTATT
44256131 TAT
1 TAT
44256134 ATACTGATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 7 0.33
19 5 0.24
20 9 0.43
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (18 bp):
TATTTTTGTTTTTTTATT
Found at i:44262925 original size:32 final size:32
Alignment explanation
Indices: 44262889--44262953 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
44262879 CTCATGTCTG
44262889 AACGTCATTATTCTAATAAAATACATATTCGC
1 AACGTCATTATTCTAATAAAATACATATTCGC
44262921 AACGTCATTATTCTAATAAAATACATATTCGC
1 AACGTCATTATTCTAATAAAATACATATTCGC
44262953 A
1 A
44262954 TTCATTTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.42, C:0.18, G:0.06, T:0.34
Consensus pattern (32 bp):
AACGTCATTATTCTAATAAAATACATATTCGC
Found at i:44265332 original size:44 final size:44
Alignment explanation
Indices: 44265196--44265334 Score: 102
Period size: 44 Copynumber: 3.2 Consensus size: 44
44265186 GATAACAGAT
* * * * *
44265196 CTTGCCTTCCTACACCGACAGCAAAGCAGATAGAAGACACTAGC
1 CTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGACACCAGC
* ** * * * * * * * *
44265240 CTTGCCTCCCTGGGTTG-CAGCGGAGCAG-GCTAAAAATAGCAGAT
1 CTTGCCTTCCTGCATCGACAGCGAAGCAGATC-GAAGACACCAG-C
44265284 CTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGACACCAGC
1 CTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGACACCAGC
44265328 CTTGCCT
1 CTTGCCT
44265335 CTCTGGGTTG
Statistics
Matches: 64, Mismatches: 27, Indels: 8
0.65 0.27 0.08
Matches are distributed among these distances:
43 15 0.23
44 31 0.48
45 17 0.27
46 1 0.02
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (44 bp):
CTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGACACCAGC
Found at i:44265341 original size:88 final size:88
Alignment explanation
Indices: 44265191--44265374 Score: 278
Period size: 88 Copynumber: 2.1 Consensus size: 88
44265181 GTGAAGATAA
*
44265191 CAGATCTTGCCTTCCTACACCGACAGCAAAGCAGATAGAAGACACTAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCCTACACCGACAGCAAAGCAGATAGAAGACACCAGCCTTGCCTCCCTGGGTT
44265256 GCAGCGGAGCAGGCTAAAAATAG
66 GCAGCGGAGCAGGCTAAAAATAG
* * * * *
44265279 CAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCTCTGGGTT
1 CAGATCTTGCCTTCCTACACCGACAGCAAAGCAGATAGAAGACACCAGCCTTGCCTCCCTGGGTT
* * *
44265344 GCAGCGGAGCAGGTTGAAAATTG
66 GCAGCGGAGCAGGCTAAAAATAG
*
44265367 CAAATCTT
1 CAGATCTT
44265375 ATCTCCCTAA
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (88 bp):
CAGATCTTGCCTTCCTACACCGACAGCAAAGCAGATAGAAGACACCAGCCTTGCCTCCCTGGGTT
GCAGCGGAGCAGGCTAAAAATAG
Found at i:44265425 original size:43 final size:43
Alignment explanation
Indices: 44265376--44265539 Score: 150
Period size: 44 Copynumber: 3.8 Consensus size: 43
44265366 GCAAATCTTA
* *
44265376 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGTCCCCAGCCTTG
1 TCTCCCTAAGCAGCAGTGGAGCAGATTGAAGTCCCCAGCCTTG
* * * * ** * *
44265419 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAT-TACAGATCTTA
1 TCTCCCTAAGCAGCAGTGGAGCAGATTG-AAGTCCCCAG-CCTTG
* *
44265463 TCTACCTAAGCAGTAGTGGAGCAGATTGAAGTCCCCAGCCTTG
1 TCTCCCTAAGCAGCAGTGGAGCAGATTGAAGTCCCCAGCCTTG
** * *
44265506 TCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGTC
1 TCTCCCT-AAGCAGCAGTGGAGCAGATTGAAGTC
44265540 GATAATCCTA
Statistics
Matches: 91, Mismatches: 26, Indels: 7
0.73 0.21 0.06
Matches are distributed among these distances:
43 38 0.42
44 53 0.58
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (43 bp):
TCTCCCTAAGCAGCAGTGGAGCAGATTGAAGTCCCCAGCCTTG
Found at i:44265445 original size:87 final size:87
Alignment explanation
Indices: 44265308--44265558 Score: 326
Period size: 87 Copynumber: 2.9 Consensus size: 87
44265298 TCGACAGCGA
* * * * * *
44265308 AGCAGATCGAAGACACCAGCCTTGCCTCTCTGGGTTGCAGCGGAGCAGGTTGAAAATTGCAAATC
1 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGTTGCAGTGGAGCAGGTTGAAAATTGCAAATC
44265373 TTATCTCCCTAAGCAGTAGTGG
66 TTATCTCCCTAAGCAGTAGTGG
** * * *
44265395 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATC
1 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGTTGCAGTGGAGCAGGTTGAAAATTGCAAATC
*
44265460 TTATCTACCTAAGCAGTAGTGG
66 TTATCTCCCTAAGCAGTAGTGG
* * *
44265482 AGCAGATTGAAGTCCCCAGCCTTGTCTCCCTGAAGTTGCAGTGGAGCAGGTT-AAAGTCG-ATAA
1 AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTG-AGTTGCAGTGGAGCAGGTTGAAAATTGCA-AA
*
44265545 TCCTATCTCCCTAA
64 TCTTATCTCCCTAA
44265559 AGTTGCAGTG
Statistics
Matches: 140, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
86 1 0.01
87 123 0.88
88 16 0.11
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (87 bp):
AGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGTTGCAGTGGAGCAGGTTGAAAATTGCAAATC
TTATCTCCCTAAGCAGTAGTGG
Found at i:44265481 original size:44 final size:44
Alignment explanation
Indices: 44265349--44265492 Score: 139
Period size: 44 Copynumber: 3.3 Consensus size: 44
44265339 GGGTTGCAGC
* * *
44265349 GGAGCAGGTTGAAAATTGCAAATCTTATCTCCCTAAGCAGTAGT
1 GGAGCAGATTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGT
* * ** * * * *
44265393 GGAGCAGATCG-AAGTCCCCAG-CCTTGTCTCCCTGAGCAGCAGT
1 GGAGCAGATTGAAAAT-TACAGATCTTATCTCCCTAAGCAGTAGT
* * *
44265436 GGAGTAGGTTGAAAATTACAGATCTTATCTACCTAAGCAGTAGT
1 GGAGCAGATTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGT
44265480 GGAGCAGATTGAA
1 GGAGCAGATTGAA
44265493 GTCCCCAGCC
Statistics
Matches: 74, Mismatches: 23, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
43 32 0.43
44 42 0.57
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (44 bp):
GGAGCAGATTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGT
Found at i:44265554 original size:44 final size:44
Alignment explanation
Indices: 44265506--44266231 Score: 324
Period size: 44 Copynumber: 16.7 Consensus size: 44
44265496 CCCAGCCTTG
* *
44265506 TCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGTCGATAATCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCTTA
* * * * * *
44265550 TCTCCCTAAAGTTGCAGTGGAGCGGATTAAAATC-TTGGATCTTG
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGAT-AATCTTA
* * *** *
44265594 TCTCTCTGAAGTTGCAG-AGAGCAGATCGCA-TC--TAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCTTA
* * * * * **
44265634 TCTCCCTGAAGTTACAATCGAGCAGACTAAGGAAG-TAAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAA-TCTTA
* * * * * *
44265678 TC-CTTCTGAAGTTACAGTGGGGCAGACTGAAGATGGCA-AATCTTA
1 TCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAG-TCG-ATAATCTTA
* * * *
44265723 TCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCTTA
* * * **
44265767 TCTCCCTCAAGTTGCAGTGGAGCGGATTAAA-ACCTTAAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGAT-AATCTTA
* * * ** * *
44265811 TCTCTCTGAAGTTGCAG-AGATCAGATTGCA-TC--TAGTATTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCTTA
* * * * * *
44265851 TCTCCCTGAAGTTACAGTGGAGCTGACT-AAGTAAGCA-AGTTTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGT-CG-ATAATCTTA
* * * *
44265895 TC-CTCCTGAAGTTACAGT-GAGGCAGACTGAAGATGGCA-AATCTTA
1 TCTC-CCTGAAGTTGCAGTGGA-GCAGATTAAAG-TCG-ATAATCTTA
* * *
44265940 TCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCGATAATCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCTTA
* * * * **
44265984 TCTCCCTAAAGTTCCAGTGGATCAGATTAAA-ACCTTAGATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATA-ATCTTA
* * * *** *
44266028 TCTCTCTGAAGTTGCAG-AGAGTAGATCGCA-TC--TAGTCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCTTA
* * * *
44266068 TCTCCCTGAAGTTGCAGTGGAGAAAACT-AAGT--ATGCAAGTCTTG
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGAT--AA-TCTTA
* * * *
44266112 TC-CTCCTGAAGTTGCAG-AGAGGCAGACTGAAGATGGCA-AATCTTA
1 TCTC-CCTGAAGTTGCAGTGGA-GCAGATTAAAG-TCG-ATAATCTTA
* *
44266157 TCTCCCTGAAGTTGCAGTGGAGCAGATTAGAG-CTGATAATCCTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTC-GATAATCTTA
* *
44266201 TCTCCCTCAAGTTGCAGTGGAGCGGATTAAA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
44266232 ACCTTAAATA
Statistics
Matches: 514, Mismatches: 125, Indels: 86
0.71 0.17 0.12
Matches are distributed among these distances:
40 61 0.12
41 25 0.05
42 2 0.00
43 44 0.09
44 274 0.53
45 94 0.18
46 13 0.03
49 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (44 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCTTA
Found at i:44265881 original size:217 final size:217
Alignment explanation
Indices: 44265506--44266394 Score: 1348
Period size: 217 Copynumber: 4.1 Consensus size: 217
44265496 CCCAGCCTTG
* *
44265506 TCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGTCGATAATCCTATCTCCCTAAAGTTGCAGTGGA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGCAGTGGA
* ** * *
44265571 GCGGATTAAAATCTTGGATCTTGTCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATC
66 GCGGATTAAAACCTTAAATCTTATCTCTCTGAAGTTGCAGAGATCAGATCGCATCTAGTCTTATC
* * * * * *
44265636 TCCCTGAAGTTACAATCGAGCAGACTAAGGAAGTAAGTCTTATCCTTCTGAAGTTACAGTGGGGC
131 TCCCTGAAGTTACAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGC
44265701 AGACTGAAGATGGCAAATCTTA
196 AGACTGAAGATGGCAAATCTTA
* * *
44265723 TCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTCAAGTTGCAGTGGA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGCAGTGGA
* *
44265788 GCGGATTAAAACCTTAAATCTTATCTCTCTGAAGTTGCAGAGATCAGATTGCATCTAGTATTATC
66 GCGGATTAAAACCTTAAATCTTATCTCTCTGAAGTTGCAGAGATCAGATCGCATCTAGTCTTATC
* *
44265853 TCCCTGAAGTTACAGTGGAGCTGACTAAGTAAGCAAGTTTTATCCTCCTGAAGTTACAGTGAGGC
131 TCCCTGAAGTTACAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGC
44265918 AGACTGAAGATGGCAAATCTTA
196 AGACTGAAGATGGCAAATCTTA
* *
44265940 TCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCCGATAATCCTATCTCCCTAAAGTTCCAGTGGA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGCAGTGGA
* * *
44266005 TCAGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGT-AGATCGCATCTAGTCTTAT
66 GCGGATTAAAACCTTAAATCTTATCTCTCTGAAGTTGCAGAGA-TCAGATCGCATCTAGTCTTAT
* * * * * * *
44266069 CTCCCTGAAGTTGCAGTGGAGAAAACTAAGTATGCAAGTCTTGTCCTCCTGAAGTTGCAGAGAGG
130 CTCCCTGAAGTTACAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGG
44266134 CAGACTGAAGATGGCAAATCTTA
195 CAGACTGAAGATGGCAAATCTTA
* * *
44266157 TCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTGATAATCCTATCTCCCTCAAGTTGCAGTGGA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGCAGTGGA
* * * * *
44266222 GCGGATTAAAACCTTAAATATTATCTCTCTAAAGTTGTAGAGATCAAATTGCATCTAGTCTTATC
66 GCGGATTAAAACCTTAAATCTTATCTCTCTGAAGTTGCAGAGATCAGATCGCATCTAGTCTTATC
* * * * *
44266287 TCCTTGAAGTTGCAGTGGAGCTGACTAAGTAAGCAAGTCTTATCCTTCTGAAGTTGCAGTGAGGC
131 TCCCTGAAGTTACAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGC
*
44266352 AGACTGAAGATGGCGAATCTTA
196 AGACTGAAGATGGCAAATCTTA
44266374 TCTCCCTGAAGTTGCAGTGGA
1 TCTCCCTGAAGTTGCAGTGGA
44266395 ATAGATTGAA
Statistics
Matches: 611, Mismatches: 59, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
216 1 0.00
217 609 1.00
218 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (217 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTAAAGTTGCAGTGGA
GCGGATTAAAACCTTAAATCTTATCTCTCTGAAGTTGCAGAGATCAGATCGCATCTAGTCTTATC
TCCCTGAAGTTACAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGAGGC
AGACTGAAGATGGCAAATCTTA
Found at i:44266384 original size:45 final size:44
Alignment explanation
Indices: 44265627--44266394 Score: 287
Period size: 44 Copynumber: 17.6 Consensus size: 44
44265617 GATCGCATCT
* * * * *
44265627 AGTCTTATCTCCCTGAAGTTACAATCGAGCAGACTAAGGAAGTA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* * * *
44265671 AGTCTTATC-CTTCTGAAGTTACAGTGGGGCAGACTGAAG-ATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGTA-AGCA
* * * * *
44265716 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAA-TA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAAGCA
* * * * *
44265761 A-TCCTATCTCCCTCAAGTTGCAGTGGAGCGGATTAA--AACCTTA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--A
* * * * * * * *
44265804 AATCTTATCTCTCTGAAGTTGCAG-AGATCAGA-T-TG-CATCT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* * *
44265844 AGTATTATCTCCCTGAAGTTACAGTGGAGCTGACTAAGTAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* * *
44265888 AGTTTTATC-CTCCTGAAGTTACAGT-GAGGCAGACTGAAG-ATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGCA
* *
44265933 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAG--AGCCGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-C-A
* * * * * * * *
44265976 TAATCCTATCTCCCTAAAGTTCCAGTGGATCAGATTAA--AACCTT
1 -AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC-A
* * * * * * *
44266020 AGATCTTATCTCTCTGAAGTTGCAG-AGAGTAGA-T-CG-CATCT
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* * *
44266061 AGTCTTATCTCCCTGAAGTTGCAGTGGAGAAAACTAAGTATGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* * *
44266105 AGTCTTGTC-CTCCTGAAGTTGCAG-AGAGGCAGACTGAAG-ATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGCA
* * * *
44266150 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAGAGCTGA-TA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTA-AG-TAAGCA
* * * * *
44266195 A-TCCTATCTCCCTCAAGTTGCAGTGGAGCGGATTAA--AACCTTA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--A
* * * * * * * * * * * *
44266238 AATATTATCTCTCTAAAGTTGTAG-AGATCA-AAT-TG-CATCT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* *
44266278 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCTGACTAAGTAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* *
44266322 AGTCTTATC-CTTCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGGCGA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGC-A
44266368 A-TCTTATCTCCCTGAAGTTGCAGTGGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGA
44266395 ATAGATTGAA
Statistics
Matches: 542, Mismatches: 125, Indels: 112
0.70 0.16 0.14
Matches are distributed among these distances:
40 62 0.11
41 17 0.03
42 15 0.03
43 37 0.07
44 266 0.49
45 132 0.24
46 12 0.02
47 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (44 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
Found at i:44268477 original size:36 final size:36
Alignment explanation
Indices: 44268436--44268626 Score: 229
Period size: 36 Copynumber: 5.0 Consensus size: 36
44268426 TGTAGCTTTA
44268436 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
* *
44268472 GCTACACTTATCTGATCAAGAGACAAATTGATAAGTGGTAGCTTT
1 GCTACACTTATCTGATCAAGTGACAAAGTGAT-A-----AG---T
*
44268517 AGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
* * *
44268554 GTTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
*
44268590 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
44268626 G
1 G
44268627 GTAGCTTAGC
Statistics
Matches: 136, Mismatches: 9, Indels: 20
0.82 0.05 0.12
Matches are distributed among these distances:
36 99 0.73
37 2 0.01
40 2 0.01
42 2 0.01
45 2 0.01
46 29 0.21
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.30
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT
Found at i:44268537 original size:82 final size:81
Alignment explanation
Indices: 44268400--44268626 Score: 310
Period size: 82 Copynumber: 2.9 Consensus size: 81
44268390 TTTGAGTATT
*
44268400 TCTGATCAAGAGATAAAGTGATAAGTTGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGAAAAAGTGATAAG-TGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
44268465 GATAAGTGCTACACTTA
65 GATAAGTGCTACACTTA
* * *
44268482 TCTGATCAAGAGACAAATTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGAAAAAGTGATAAGT-GTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
* *
44268547 GATAAGTGTTATACTTA
65 GATAAGTGCTACACTTA
*
44268564 TCTGATCAAGTGAAAAAGTGATAA--GT-GC--TA--T--ACTTATCTGATCAAGTGACAAAGTG
1 TCTGATCAAGAGAAAAAGTGATAAGTGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTG
44268620 ATAAGTG
66 ATAAGTG
44268627 GTAGCTTAGC
Statistics
Matches: 135, Mismatches: 9, Indels: 12
0.87 0.06 0.08
Matches are distributed among these distances:
72 31 0.23
74 1 0.01
76 2 0.01
78 2 0.01
79 2 0.01
81 1 0.01
82 96 0.71
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (81 bp):
TCTGATCAAGAGAAAAAGTGATAAGTGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGTG
ATAAGTGCTACACTTA
Found at i:44270700 original size:14 final size:16
Alignment explanation
Indices: 44270665--44270712 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 16
44270655 TAATTTTCAT
44270665 ATGTAATTATTTTTTTA
1 ATGTAA-TATTTTTTTA
44270682 CATGT-ATATTTTTTT-
1 -ATGTAATATTTTTTTA
44270697 ATGTACATATTTTTTT
1 ATGTA-ATATTTTTTT
44270713 TAAAACTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 4 0.14
16 19 0.68
17 1 0.04
18 4 0.14
ACGTcount: A:0.25, C:0.04, G:0.06, T:0.65
Consensus pattern (16 bp):
ATGTAATATTTTTTTA
Found at i:44278719 original size:12 final size:12
Alignment explanation
Indices: 44278702--44278726 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
44278692 CAAGCGGAAC
44278702 CATGGCGAAAAA
1 CATGGCGAAAAA
44278714 CATGGCGAAAAA
1 CATGGCGAAAAA
44278726 C
1 C
44278727 CAACCCAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.20, G:0.24, T:0.08
Consensus pattern (12 bp):
CATGGCGAAAAA
Found at i:44284665 original size:28 final size:28
Alignment explanation
Indices: 44284634--44284719 Score: 76
Period size: 28 Copynumber: 3.3 Consensus size: 28
44284624 CTGAAGGAGT
44284634 TTTTCAAAAAGTGTTTCCGAGAAAATTC
1 TTTTCAAAAAGTGTTTCCGAGAAAATTC
* * ** *
44284662 TTTTC--AAA-T-TTGCTGA-AGGAGT-
1 TTTTCAAAAAGTGTTTCCGAGAAAATTC
*
44284684 TTTTCAAAAAGTGTTTTCGAGAAAATTC
1 TTTTCAAAAAGTGTTTCCGAGAAAATTC
44284712 TTTTCAAA
1 TTTTCAAA
44284720 TTTTTGCATT
Statistics
Matches: 41, Mismatches: 11, Indels: 12
0.64 0.17 0.19
Matches are distributed among these distances:
22 5 0.12
23 3 0.07
24 8 0.20
25 2 0.05
26 7 0.17
27 3 0.07
28 13 0.32
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.40
Consensus pattern (28 bp):
TTTTCAAAAAGTGTTTCCGAGAAAATTC
Found at i:44284699 original size:50 final size:50
Alignment explanation
Indices: 44284624--44284722 Score: 189
Period size: 50 Copynumber: 2.0 Consensus size: 50
44284614 GAATGTTGTT
44284624 CTGAAGGAGTTTTTCAAAAAGTGTTTCCGAGAAAATTCTTTTCAAATTTG
1 CTGAAGGAGTTTTTCAAAAAGTGTTTCCGAGAAAATTCTTTTCAAATTTG
*
44284674 CTGAAGGAGTTTTTCAAAAAGTGTTTTCGAGAAAATTCTTTTCAAATTT
1 CTGAAGGAGTTTTTCAAAAAGTGTTTCCGAGAAAATTCTTTTCAAATTT
44284723 TTGCATTACT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.39
Consensus pattern (50 bp):
CTGAAGGAGTTTTTCAAAAAGTGTTTCCGAGAAAATTCTTTTCAAATTTG
Found at i:44286993 original size:513 final size:513
Alignment explanation
Indices: 44286026--44287051 Score: 2025
Period size: 513 Copynumber: 2.0 Consensus size: 513
44286016 TTATTCTTCT
44286026 AGGGTAGCTGAAGTTAATTTAGCATTGTATTTGGCGATACATATGCCTTGCAAAACTTGCAAGAT
1 AGGGTAGCTGAAGTTAATTTAGCATTGTATTTGGCGATACATATGCCTTGCAAAACTTGCAAGAT
44286091 TATTGTGATTAAACTGTTTCAAGGTAGAAATACTCTGTTACGTCACTTGATCTTTTATATGGTTG
66 TATTGTGATTAAACTGTTTCAAGGTAGAAATACTCTGTTACGTCACTTGATCTTTTATATGGTTG
44286156 TGAAGATTGATTAATCACTTGGATTGACATTGAAAAATGTTCAAGAGATTGATTAATTTGATAAG
131 TGAAGATTGATTAATCACTTGGATTGACATTGAAAAATGTTCAAGAGATTGATTAATTTGATAAG
44286221 TATGTATGAGTAGTAGTTAGCAAATTATCGTGTTGCCGTGAATTTGTTCGTAGCAGTATAAACAT
196 TATGTATGAGTAGTAGTTAGCAAATTATCGTGTTGCCGTGAATTTGTTCGTAGCAGTATAAACAT
*
44286286 AAGTTTAATAATTCTATGTTAAAGGAATGTATAATCCAACACAATTATATCATCTTGATTAAACC
261 AAGTTTAATAATTCTATGTTAAAGGAATGCATAATCCAACACAATTATATCATCTTGATTAAACC
44286351 TTATTTGAAATCATGCATTAGTACTTTTTTATTTTTAAATTTTTTTACTTAGATTTTAAAACTTA
326 TTATTTGAAATCATGCATTAGTACTTTTTTATTTTTAAATTTTTTTACTTAGATTTTAAAACTTA
44286416 GTTTTTAATCATCTTTAAACCAAAATATTTTCGATCACCAAAGTGTTTTAATAGTAATTTCATAA
391 GTTTTTAATCATCTTTAAACCAAAATATTTTCGATCACCAAAGTGTTTTAATAGTAATTTCATAA
44286481 ATATTTTTTTACAGTCCCTGTGGGTACGATAACTCGATATTTACTTGTCACTTTATTA
456 ATATTTTTTTACAGTCCCTGTGGGTACGATAACTCGATATTTACTTGTCACTTTATTA
44286539 AGGGTAGCTGAAGTTAATTTAGCATTGTATTTGGCGATACATATGCCTTGCAAAACTTGCAAGAT
1 AGGGTAGCTGAAGTTAATTTAGCATTGTATTTGGCGATACATATGCCTTGCAAAACTTGCAAGAT
44286604 TATTGTGATTAAACTGTTTCAAGGTAGAAATACTCTGTTACGTCACTTGATCTTTTATATGGTTG
66 TATTGTGATTAAACTGTTTCAAGGTAGAAATACTCTGTTACGTCACTTGATCTTTTATATGGTTG
44286669 TGAAGATTGATTAATCACTTGGATTGACATTGAAAAATGTTCAAGAGATTGATTAATTTGATAAG
131 TGAAGATTGATTAATCACTTGGATTGACATTGAAAAATGTTCAAGAGATTGATTAATTTGATAAG
44286734 TATGTATGAGTAGTAGTTAGCAAATTATCGTGTTGCCGTGAATTTGTTCGTAGCAGTATAAACAT
196 TATGTATGAGTAGTAGTTAGCAAATTATCGTGTTGCCGTGAATTTGTTCGTAGCAGTATAAACAT
*
44286799 AAGTTTAATAATTCTATGTTCAAGGAATGCATAATCCAACACAATTATATCATCTTGATTAAACC
261 AAGTTTAATAATTCTATGTTAAAGGAATGCATAATCCAACACAATTATATCATCTTGATTAAACC
44286864 TTATTTGAAATCATGCATTAGTACTTTTTTATTTTTAAATTTTTTTACTTAGATTTTAAAACTTA
326 TTATTTGAAATCATGCATTAGTACTTTTTTATTTTTAAATTTTTTTACTTAGATTTTAAAACTTA
44286929 GTTTTTAATCATCTTTAAACCAAAATATTTTCGATCACCAAAGTGTTTTAATAGTAATTTCATAA
391 GTTTTTAATCATCTTTAAACCAAAATATTTTCGATCACCAAAGTGTTTTAATAGTAATTTCATAA
*
44286994 ATATTTTTTTTCAGTCCCTGTGGGTACGATAACTCGATATTTACTTGTCACTTTATTA
456 ATATTTTTTTACAGTCCCTGTGGGTACGATAACTCGATATTTACTTGTCACTTTATTA
44287052 CTTGTTGCGA
Statistics
Matches: 510, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
513 510 1.00
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (513 bp):
AGGGTAGCTGAAGTTAATTTAGCATTGTATTTGGCGATACATATGCCTTGCAAAACTTGCAAGAT
TATTGTGATTAAACTGTTTCAAGGTAGAAATACTCTGTTACGTCACTTGATCTTTTATATGGTTG
TGAAGATTGATTAATCACTTGGATTGACATTGAAAAATGTTCAAGAGATTGATTAATTTGATAAG
TATGTATGAGTAGTAGTTAGCAAATTATCGTGTTGCCGTGAATTTGTTCGTAGCAGTATAAACAT
AAGTTTAATAATTCTATGTTAAAGGAATGCATAATCCAACACAATTATATCATCTTGATTAAACC
TTATTTGAAATCATGCATTAGTACTTTTTTATTTTTAAATTTTTTTACTTAGATTTTAAAACTTA
GTTTTTAATCATCTTTAAACCAAAATATTTTCGATCACCAAAGTGTTTTAATAGTAATTTCATAA
ATATTTTTTTACAGTCCCTGTGGGTACGATAACTCGATATTTACTTGTCACTTTATTA
Found at i:44293210 original size:30 final size:30
Alignment explanation
Indices: 44293159--44293441 Score: 182
Period size: 30 Copynumber: 9.3 Consensus size: 30
44293149 ATCGATCTAA
* ** *
44293159 GAAAAAGGATAGCTTTGGCTATCGAACTAT
1 GAAAAGGGATAGCTTCAGCTATCAAACTAT
* *
44293189 GAAAAGGGATAGCTCCAGCTATCAAATTAT
1 GAAAAGGGATAGCTTCAGCTATCAAACTAT
* * * * *
44293219 GAAAAGGGAT-GGTGACGGCCATCAAACAAT
1 GAAAAGGGATAGCT-TCAGCTATCAAACTAT
* * * *
44293249 GAAAAGGGAT-G-GTGACGACCATCAAAATTAT
1 GAAAAGGGATAGCTTCA-G-CTATC-AAACTAT
44293280 GAAAAAGGGATAGCTTCAGCTATCAAACTAT
1 G-AAAAGGGATAGCTTCAGCTATCAAACTAT
*
44293311 GAAAAGGGATAGCTTCAGCTATCAAATTAT
1 GAAAAGGGATAGCTTCAGCTATCAAACTAT
* * * * *
44293341 GAAAATGGATGGCTACA-ATCATCAAACAAT
1 GAAAAGGGATAGCTTCAGCT-ATCAAACTAT
* * * *
44293371 GAAAAGGGAT-G-GTGACGACCATCAAAATTAT
1 GAAAAGGGATAGCTTCA-G-CTATC-AAACTAT
* * *
44293402 GAAAAGGGATAGCTTCGGCTATCGAATTAT
1 GAAAAGGGATAGCTTCAGCTATCAAACTAT
*
44293432 GGAAAGGGAT
1 GAAAAGGGAT
44293442 GGTATCAACC
Statistics
Matches: 196, Mismatches: 43, Indels: 28
0.73 0.16 0.10
Matches are distributed among these distances:
28 1 0.01
29 5 0.03
30 138 0.70
31 32 0.16
32 15 0.08
33 3 0.02
34 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (30 bp):
GAAAAGGGATAGCTTCAGCTATCAAACTAT
Found at i:44293351 original size:92 final size:90
Alignment explanation
Indices: 44293186--44293454 Score: 278
Period size: 92 Copynumber: 2.9 Consensus size: 90
44293176 GCTATCGAAC
* * * * **
44293186 TATGAAAAGGGATAGCTCCAGCTATCAAATTATGAAAAGGGAT-GGTGACGGCCATCAAACAATG
1 TATGAAAAGGGATAGCTTCAGCTATCAAATTATGAAAAGGGATAGCT-TCGGCTATCAAATTATG
*
44293250 AAAAGGGATGGTGACGACCATCAAA-A
65 AAAAGGGATGGT-ACAACCATCAAACA
* *
44293276 TTATGAAAAAGGGATAGCTTCAGCTATCAAACTATGAAAAGGGATAGCTTCAGCTATCAAATTAT
1 -TATG-AAAAGGGATAGCTTCAGCTATCAAATTATGAAAAGGGATAGCTTCGGCTATCAAATTAT
* *
44293341 GAAAATGGATGGCTACAATCATCAAACA
64 GAAAAGGGATGG-TACAACCATCAAACA
* * * *
44293369 -ATGAAAAGGGAT-G-GTGACGACCATCAAAATTATGAAAAGGGATAGCTTCGGCTATCGAATTA
1 TATGAAAAGGGATAGCTTCA-G-CTATC-AAATTATGAAAAGGGATAGCTTCGGCTATCAAATTA
*
44293431 TGGAAAGGGATGGTATCAACCATC
63 TGAAAAGGGATGGTA-CAACCATC
44293455 TTATTATCAC
Statistics
Matches: 150, Mismatches: 20, Indels: 16
0.81 0.11 0.09
Matches are distributed among these distances:
88 2 0.01
89 2 0.01
90 15 0.10
91 58 0.39
92 69 0.46
93 4 0.03
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (90 bp):
TATGAAAAGGGATAGCTTCAGCTATCAAATTATGAAAAGGGATAGCTTCGGCTATCAAATTATGA
AAAGGGATGGTACAACCATCAAACA
Found at i:44293382 original size:122 final size:122
Alignment explanation
Indices: 44293159--44293441 Score: 446
Period size: 122 Copynumber: 2.3 Consensus size: 122
44293149 ATCGATCTAA
*
44293159 GAAAAA-GGATAGCTTTGGCTATCGAACTATGAAAAGGGATAGCTCCAGCTATCAAATTATGAAA
1 GAAAAAGGGATAGCTTCGGCTATCGAACTATGAAAAGGGATAGCTCCAGCTATCAAATTATGAAA
**
44293223 AGGGATGGTGACGGCCATCAAACAATGAAAAGGGATGGTGACGACCATCAAAATTAT
66 AGGGATGGTGACAACCATCAAACAATGAAAAGGGATGGTGACGACCATCAAAATTAT
* * *
44293280 GAAAAAGGGATAGCTTCAGCTATCAAACTATGAAAAGGGATAGCTTCAGCTATCAAATTATGAAA
1 GAAAAAGGGATAGCTTCGGCTATCGAACTATGAAAAGGGATAGCTCCAGCTATCAAATTATGAAA
* *
44293345 ATGGATGGCT-ACAATCATCAAACAATGAAAAGGGATGGTGACGACCATCAAAATTAT
66 AGGGATGG-TGACAACCATCAAACAATGAAAAGGGATGGTGACGACCATCAAAATTAT
* *
44293402 G-AAAAGGGATAGCTTCGGCTATCGAATTATGGAAAGGGAT
1 GAAAAAGGGATAGCTTCGGCTATCGAACTATGAAAAGGGAT
44293442 GGTATCAACC
Statistics
Matches: 148, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
121 41 0.28
122 106 0.72
123 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (122 bp):
GAAAAAGGGATAGCTTCGGCTATCGAACTATGAAAAGGGATAGCTCCAGCTATCAAATTATGAAA
AGGGATGGTGACAACCATCAAACAATGAAAAGGGATGGTGACGACCATCAAAATTAT
Found at i:44295695 original size:40 final size:39
Alignment explanation
Indices: 44295505--44295688 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
44295495 CGAATGATGT
* * * *
44295505 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
44295545 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
44295585 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
44295623 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
44295664 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
44295689 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:44295711 original size:79 final size:79
Alignment explanation
Indices: 44295557--44295721 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
44295547 GGACTAAGAT
* **
44295557 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
44295622 ATCCGAGTTAAGTC
66 ATCCGAGTTAAATC
* * *
44295636 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
44295699 TATATCCG-GTTAAATT
63 TAAATCCGAGTTAAATC
44295715 CCGAAGG
1 CCGAAGG
44295722 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGAGTTAAATC
Found at i:44303574 original size:79 final size:81
Alignment explanation
Indices: 44303438--44303622 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
44303428 TTGAATGATG
*
44303438 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
44303502 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
44303517 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
44303579 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
44303597 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
44303623 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:44303636 original size:40 final size:40
Alignment explanation
Indices: 44303439--44303622 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
44303429 TGAATGATGT
* * * *
44303439 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
44303479 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
44303519 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
44303557 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
44303598 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
44303623 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:44303644 original size:79 final size:79
Alignment explanation
Indices: 44303491--44303655 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
44303481 GGACTAAGAT
* **
44303491 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
44303556 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
44303570 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
44303633 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
44303649 CCGAAGG
1 CCGAAGG
44303656 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:44309505 original size:26 final size:27
Alignment explanation
Indices: 44309453--44309505 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
44309443 TTGAATTTTT
* *
44309453 TAAAGGTTATAAATGTAATTAAGTAAA
1 TAAAGGTTATAAATGTAATAAAATAAA
44309480 TAAAGGTTA-AAAT-TAAATAAAATAAA
1 TAAAGGTTATAAATGT-AATAAAATAAA
44309506 AACTTACTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 1 0.04
26 13 0.57
27 9 0.39
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.30
Consensus pattern (27 bp):
TAAAGGTTATAAATGTAATAAAATAAA
Found at i:44309833 original size:30 final size:31
Alignment explanation
Indices: 44309799--44309859 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 31
44309789 TGAAATTATC
44309799 ATTTAGGGAT-TAAATTGAAAAATAA-GAAAT
1 ATTTAGGG-TGTAAATTGAAAAATAATGAAAT
* **
44309829 ATTTATGGTGTAAATTGTGAAATAATGAAAT
1 ATTTAGGGTGTAAATTGAAAAATAATGAAAT
44309860 GTGTGGGCTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 1 0.04
30 20 0.77
31 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.34
Consensus pattern (31 bp):
ATTTAGGGTGTAAATTGAAAAATAATGAAAT
Found at i:44310251 original size:30 final size:30
Alignment explanation
Indices: 44310210--44310464 Score: 146
Period size: 30 Copynumber: 8.4 Consensus size: 30
44310200 ACCATCGATC
* * *
44310210 TATGAAAAGGGATAGCTCTGGCTATTACAT
1 TATGAAAAGGGATAGCTCTAGCTATCAAAT
* * *
44310240 TATGGAAAGGGATAG-TGACAAG-AATCAAAAT
1 TATGAAAAGGGATAGCT--CTAGCTATC-AAAT
* *
44310271 TATGAAAAGGGATAGCTTTAGCTATCAAAC
1 TATGAAAAGGGATAGCTCTAGCTATCAAAT
* *
44310301 TATGGAAAGGGATAGCTCTGGCTATCAAAT
1 TATGAAAAGGGATAGCTCTAGCTATCAAAT
* * * * *
44310331 TATGAAAATGGATGGCTACGA-CTATTAAAC
1 TATGAAAAGGGATAGCT-CTAGCTATCAAAT
* * * * *
44310361 AATGAAAAGGGAT-GGT-GACGACCATCAAAAC
1 TATGAAAAGGGATAGCTCTA-G-CTATC-AAAT
*
44310392 TATGAAAAGGGATAGCT-TCAGCTATCGAAT
1 TATGAAAAGGGATAGCTCT-AGCTATCAAAT
*** *
44310422 CCCGAAAAGGGATAGCT-TCGGCTATCAAAT
1 TATGAAAAGGGATAGCTCT-AGCTATCAAAT
*
44310452 TATGCAAAGGGAT
1 TATGAAAAGGGAT
44310465 GGTATCAACC
Statistics
Matches: 171, Mismatches: 42, Indels: 24
0.72 0.18 0.10
Matches are distributed among these distances:
27 2 0.01
29 3 0.02
30 118 0.69
31 43 0.25
32 4 0.02
33 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.24
Consensus pattern (30 bp):
TATGAAAAGGGATAGCTCTAGCTATCAAAT
Found at i:44310429 original size:91 final size:91
Alignment explanation
Indices: 44310297--44310467 Score: 200
Period size: 91 Copynumber: 1.9 Consensus size: 91
44310287 TTTAGCTATC
* * * * * * *
44310297 AAACTATGGAAAGGGATAGCTCTGGCTATCAAATTATGAAAATGGATGGCTACGACTATTAAACA
1 AAACTATGAAAAGGGATAGCTCTAGCTATCAAATCACGAAAAGGGATAGCTACGACTATCAAACA
44310362 ATGAAAAGGGATGGTGACGACCATCA
66 ATGAAAAGGGATGGTGACGACCATCA
* * * * *
44310388 AAACTATGAAAAGGGATAGCT-TCAGCTATCGAATCCCGAAAAGGGATAGCTTCGGCTATCAAAT
1 AAACTATGAAAAGGGATAGCTCT-AGCTATCAAATCACGAAAAGGGATAGCTACGACTATCAAAC
* *
44310452 TATGCAAAGGGATGGT
65 AATGAAAAGGGATGGT
44310468 ATCAACCATC
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
90 1 0.02
91 64 0.98
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (91 bp):
AAACTATGAAAAGGGATAGCTCTAGCTATCAAATCACGAAAAGGGATAGCTACGACTATCAAACA
ATGAAAAGGGATGGTGACGACCATCA
Found at i:44310431 original size:121 final size:121
Alignment explanation
Indices: 44310210--44310466 Score: 304
Period size: 121 Copynumber: 2.1 Consensus size: 121
44310200 ACCATCGATC
* * * ** * * *
44310210 TATGAAAAGGGATAGCT-CTGGCTATTACATTATGGAAAGGGATAGTGACAAGAATCAAAATTAT
1 TATGAAAAGGGATGGCTAC-GACTATTAAACAATGAAAAGGGATAGTGACAACAATCAAAACTAT
* * *
44310274 GAAAAGGGATAGCTTTAGCTATCAAACTATGGAAAGGGATAGC-TCTGGCTATCAAAT
65 GAAAAGGGATAGCTTCAGCTATCAAACTACGAAAAGGGATAGCTTC-GGCTATCAAAT
* * * *
44310331 TATGAAAATGGATGGCTACGACTATTAAACAATGAAAAGGGATGGTGACGACCATCAAAACTATG
1 TATGAAAAGGGATGGCTACGACTATTAAACAATGAAAAGGGATAGTGACAACAATCAAAACTATG
* *
44310396 AAAAGGGATAGCTTCAGCTATCGAA-TCCCGAAAAGGGATAGCTTCGGCTATCAAAT
66 AAAAGGGATAGCTTCAGCTATCAAACT-ACGAAAAGGGATAGCTTCGGCTATCAAAT
*
44310452 TATGCAAAGGGATGG
1 TATGAAAAGGGATGG
44310467 TATCAACCAT
Statistics
Matches: 114, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
120 1 0.01
121 110 0.96
122 3 0.03
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.23
Consensus pattern (121 bp):
TATGAAAAGGGATGGCTACGACTATTAAACAATGAAAAGGGATAGTGACAACAATCAAAACTATG
AAAAGGGATAGCTTCAGCTATCAAACTACGAAAAGGGATAGCTTCGGCTATCAAAT
Found at i:44333551 original size:11 final size:11
Alignment explanation
Indices: 44333535--44333560 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
44333525 TAGAAAATCT
44333535 AAAAATACAAA
1 AAAAATACAAA
44333546 AAAAATACAAA
1 AAAAATACAAA
44333557 AAAA
1 AAAA
44333561 TAAAAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (11 bp):
AAAAATACAAA
Found at i:44337095 original size:22 final size:22
Alignment explanation
Indices: 44337070--44337128 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
44337060 GATAGGTGGT
*
44337070 GGTGGCATGGTGGTGGTGCGAC
1 GGTGGTATGGTGGTGGTGCGAC
* ** *
44337092 GGTGGTATGGTGGTTGTGTTAT
1 GGTGGTATGGTGGTGGTGCGAC
44337114 GGTGGTATGGTGGTG
1 GGTGGTATGGTGGTG
44337129 TCAAGGAAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.08, C:0.05, G:0.53, T:0.34
Consensus pattern (22 bp):
GGTGGTATGGTGGTGGTGCGAC
Found at i:44346887 original size:54 final size:53
Alignment explanation
Indices: 44346829--44347000 Score: 184
Period size: 54 Copynumber: 3.2 Consensus size: 53
44346819 ACCCCCGTAA
* *
44346829 GGTAAAATGATTGAAAAACCTCTATTGGGTAAAATGATCGTAATGCCCCTATAG
1 GGTAAAATGATCGAAAAACC-CTATAGGGTAAAATGATCGTAATGCCCCTATAG
* * **
44346883 GGTAAAATAATCAAAAAACCCTCATAGGGTAAAATGATCGTAATGCCCCTGCAG
1 GGTAAAATGATCGAAAAACCCT-ATAGGGTAAAATGATCGTAATGCCCCTATAG
* * * * * * *
44346937 GGTAAAATGATCGTAATACCCCCATAGGTTTAAAA-GATCGAAATACCCCTATAA
1 GGTAAAATGATCG-AAAAACCCTATAGG-GTAAAATGATCGTAATGCCCCTATAG
44346991 GGTAAAATGA
1 GGTAAAATGA
44347001 CCATAATGCC
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
53 2 0.02
54 85 0.87
55 11 0.11
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (53 bp):
GGTAAAATGATCGAAAAACCCTATAGGGTAAAATGATCGTAATGCCCCTATAG
Found at i:44346942 original size:81 final size:81
Alignment explanation
Indices: 44346855--44347023 Score: 209
Period size: 81 Copynumber: 2.1 Consensus size: 81
44346845 AACCTCTATT
* * *
44346855 GGGTAAAATGATCGTAATGCCCCTATAGG-GTAAAATAATCAAAAAA-CCCTCATAGGGTAAAAT
1 GGGTAAAATGATCGTAATACCCCCATAGGTGTAAAA-AATCAAAAAACCCCT-ATAAGGTAAAAT
* *
44346918 GATCGTAATGCCCCT-GCA
64 GACCATAATGCCCCTAG-A
* * * *
44346936 GGGTAAAATGATCGTAATACCCCCATAGGTTTAAAAGATCGAAATACCCCTATAAGGTAAAATGA
1 GGGTAAAATGATCGTAATACCCCCATAGGTGTAAAAAATCAAAAAACCCCTATAAGGTAAAATGA
44347001 CCATAATGCCCCTAGA
66 CCATAATGCCCCTAGA
44347017 GGGTAAA
1 GGGTAAA
44347024 TGACTATTTT
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
81 66 0.87
82 10 0.13
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (81 bp):
GGGTAAAATGATCGTAATACCCCCATAGGTGTAAAAAATCAAAAAACCCCTATAAGGTAAAATGA
CCATAATGCCCCTAGA
Found at i:44347013 original size:27 final size:27
Alignment explanation
Indices: 44346804--44347023 Score: 153
Period size: 27 Copynumber: 8.1 Consensus size: 27
44346794 CCAATATTTT
** *
44346804 TAAAATGAAT-ATAATACCCCCGTAAGG
1 TAAAATG-ATCATAATACCCCTATAGGG
* * * *
44346831 TAAAATGATTGA-AAAACCTCTATTGGG
1 TAAAATGA-TCATAATACCCCTATAGGG
* *
44346858 TAAAATGATCGTAATGCCCCTATAGGG
1 TAAAATGATCATAATACCCCTATAGGG
* * *
44346885 TAAAATAATCA-AAAAACCCTCATAGGG
1 TAAAATGATCATAATACCCCT-ATAGGG
* * **
44346912 TAAAATGATCGTAATGCCCCTGCAGGG
1 TAAAATGATCATAATACCCCTATAGGG
* * *
44346939 TAAAATGATCGTAATACCCCCATAGGTT
1 TAAAATGATCATAATACCCCTATAGG-G
*
44346967 TAAAA-GATCGA-AATACCCCTATAAGG
1 TAAAATGATC-ATAATACCCCTATAGGG
* * *
44346993 TAAAATGACCATAATGCCCCTAGAGGG
1 TAAAATGATCATAATACCCCTATAGGG
44347020 TAAA
1 TAAA
44347024 TGACTATTTT
Statistics
Matches: 147, Mismatches: 37, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
26 14 0.10
27 121 0.82
28 12 0.08
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (27 bp):
TAAAATGATCATAATACCCCTATAGGG
Found at i:44347078 original size:50 final size:48
Alignment explanation
Indices: 44347019--44347116 Score: 124
Period size: 48 Copynumber: 2.0 Consensus size: 48
44347009 CCCCTAGAGG
44347019 GTAAATGACTATTTTGCCCCTCGAGTGTAAACGATTGATTTGTCTGTGAT
1 GTAAATGACTATTTTG-CCCTCGA-TGTAAACGATTGATTTGTCTGTGAT
* * * * * *
44347069 GTAAATGACTGTTTTGTCTTTGATTTAAATGATTGATTTGTCTGTGAT
1 GTAAATGACTATTTTGCCCTCGATGTAAACGATTGATTTGTCTGTGAT
44347117 TGGTATGACT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
48 23 0.55
49 4 0.10
50 15 0.36
ACGTcount: A:0.23, C:0.11, G:0.21, T:0.44
Consensus pattern (48 bp):
GTAAATGACTATTTTGCCCTCGATGTAAACGATTGATTTGTCTGTGAT
Found at i:44347084 original size:24 final size:24
Alignment explanation
Indices: 44347044--44347154 Score: 100
Period size: 24 Copynumber: 4.6 Consensus size: 24
44347034 GCCCCTCGAG
* *
44347044 TGTAAACGATTGATTTGTCTGTGA
1 TGTAAATGACTGATTTGTCTGTGA
* *
44347068 TGTAAATGACTGTTTTGTCTTTGA
1 TGTAAATGACTGATTTGTCTGTGA
* *
44347092 TTTAAATGATTGATTTGTCTGTGA
1 TGTAAATGACTGATTTGTCTGTGA
*
44347116 TTGGT--ATGACTGATTTGTTTGTGA
1 -T-GTAAATGACTGATTTGTCTGTGA
* **
44347140 TTTGTATGACTGATT
1 TGTAAATGACTGATT
44347155 CTAAGGAAGG
Statistics
Matches: 71, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 67 0.94
25 1 0.01
26 1 0.01
ACGTcount: A:0.22, C:0.06, G:0.23, T:0.49
Consensus pattern (24 bp):
TGTAAATGACTGATTTGTCTGTGA
Found at i:44347125 original size:48 final size:47
Alignment explanation
Indices: 44347046--44347142 Score: 126
Period size: 48 Copynumber: 2.0 Consensus size: 47
44347036 CCCTCGAGTG
*
44347046 TAAACGATTGATTTGTCTGTGATGTAAATGACTGTTTTGTCTT-TGATT
1 TAAACGATTGATTTGTCTGTGATGT-AATGACTGATTTGT-TTGTGATT
*
44347094 TAAATGATTGATTTGTCTGTGATTGGT-ATGACTGATTTGTTTGTGATT
1 TAAACGATTGATTTGTCTGTGA-T-GTAATGACTGATTTGTTTGTGATT
44347142 T
1 T
44347143 GTATGACTGA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
47 2 0.05
48 39 0.89
49 1 0.02
50 2 0.05
ACGTcount: A:0.22, C:0.06, G:0.23, T:0.49
Consensus pattern (47 bp):
TAAACGATTGATTTGTCTGTGATGTAATGACTGATTTGTTTGTGATT
Found at i:44347154 original size:48 final size:47
Alignment explanation
Indices: 44347054--44347154 Score: 116
Period size: 48 Copynumber: 2.1 Consensus size: 47
44347044 TGTAAACGAT
* *
44347054 TGATTTGTCTGTGATGTAAATGACTGTTTTGTCTTTGATTTAAATGAT
1 TGATTTGTCTGTGATGT-AATGACTGATTTGTCTTTGATTTAAATGAC
**
44347102 TGATTTGTCTGTGATTGGT-ATGACTGATTTGT-TTGTGATTTGTATGAC
1 TGATTTGTCTGTGA-T-GTAATGACTGATTTGTCTT-TGATTTAAATGAC
44347150 TGATT
1 TGATT
44347155 CTAAGGAAGG
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
47 2 0.04
48 41 0.89
49 1 0.02
50 2 0.04
ACGTcount: A:0.20, C:0.06, G:0.24, T:0.50
Consensus pattern (47 bp):
TGATTTGTCTGTGATGTAATGACTGATTTGTCTTTGATTTAAATGAC
Found at i:44347367 original size:32 final size:32
Alignment explanation
Indices: 44347329--44347451 Score: 140
Period size: 32 Copynumber: 3.8 Consensus size: 32
44347319 GCAATGATAT
*
44347329 TGATGGCTTTGTGCTAATCATATTACTGTTAT
1 TGATGGCTTTGTGCTAATCATATTACTGTTAC
** * *
44347361 TGATGGCTTTGTGCCGATCATAATACCGTTAC
1 TGATGGCTTTGTGCTAATCATATTACTGTTAC
** * *
44347393 TGATGG-TTGTGTGCTGGTCATATCACTGCTAC
1 TGATGGCTT-TGTGCTAATCATATTACTGTTAC
*
44347425 TGGTGGCTTTGTGCTAATCATATTACT
1 TGATGGCTTTGTGCTAATCATATTACT
44347452 ATACTTTTAG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
31 2 0.03
32 70 0.95
33 2 0.03
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.41
Consensus pattern (32 bp):
TGATGGCTTTGTGCTAATCATATTACTGTTAC
Found at i:44349567 original size:110 final size:111
Alignment explanation
Indices: 44349374--44349595 Score: 401
Period size: 110 Copynumber: 2.0 Consensus size: 111
44349364 TTGTGGAAAC
*
44349374 TCCACAAATCATGTGAGCAACATTGTGTAGCTTACATTCCGACCCACAACTCATGTGAGTAGGCC
1 TCCACAAATCATGTGAGCAACATCGTGTAGCTTACATTCCGACCCACAACTCATGTGAGTAGGCC
* *
44349439 CATTTCACAGCTTGTGTGAGCAATAATATGAAGGAAAGGTTA-AAT
66 CATTTCACAGCTTATGTGAGCAACAATATGAAGGAAAGGTTACAAT
*
44349484 TCCACAACTCATGTGAGCAACATCGTGTAGCTTACATTCCGACCCACAACTCATGTGAGTAGGCC
1 TCCACAAATCATGTGAGCAACATCGTGTAGCTTACATTCCGACCCACAACTCATGTGAGTAGGCC
44349549 CATTTCACAGCTTATGTGAGCAACAATATGAAGGAAAGGTTACAAT
66 CATTTCACAGCTTATGTGAGCAACAATATGAAGGAAAGGTTACAAT
44349595 T
1 T
44349596 ATATGTTTAA
Statistics
Matches: 107, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
110 103 0.96
111 4 0.04
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (111 bp):
TCCACAAATCATGTGAGCAACATCGTGTAGCTTACATTCCGACCCACAACTCATGTGAGTAGGCC
CATTTCACAGCTTATGTGAGCAACAATATGAAGGAAAGGTTACAAT
Found at i:44353076 original size:50 final size:50
Alignment explanation
Indices: 44352943--44353133 Score: 202
Period size: 50 Copynumber: 3.8 Consensus size: 50
44352933 CTATACTACT
* * * * *
44352943 AACGCCATATCCCAGATATGGTATTACATGGGAGTTCTCATATCGGTGCC
1 AACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGGTGCC
* * * * *** *
44352993 CATGGCATGTCCCGGACATGGTCTTATGGGGGACTTCTTATCTCGGTGCC
1 AACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGGTGCC
* * **
44353043 AACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGTT
1 AACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGGTGCC
* * *
44353093 AATGCCATGTCCCAGACATTGTCTTACATGGGACCTCTCAT
1 AACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCAT
44353134 AATCTCAATA
Statistics
Matches: 114, Mismatches: 27, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 114 1.00
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (50 bp):
AACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGGTGCC
Found at i:44353126 original size:100 final size:100
Alignment explanation
Indices: 44352943--44353126 Score: 224
Period size: 100 Copynumber: 1.8 Consensus size: 100
44352933 CTATACTACT
* ** * * * *
44352943 AACGCCATATCCCAGATATGGTATTACATGGGAGTTCTCATATCGGTGCCCATGGCATGTCCCGG
1 AACGCCATATCCCAGACATGGTATTACATGGGACCTCTCATATCGATGCCAATGCCATGTCCCAG
**
44353008 ACATGGTCTTATGGGGGACTTCTTATCTCGGTGCC
66 ACATGGTCTTACAGGGGACTTCTTATCTCGGTGCC
* * * **
44353043 AACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGTTAATGCCATGTCCCAG
1 AACGCCATATCCCAGACATGGTATTACATGGGACCTCTCATATCGATGCCAATGCCATGTCCCAG
* *
44353108 ACATTGTCTTACATGGGAC
66 ACATGGTCTTACAGGGGAC
44353127 CTCTCATAAT
Statistics
Matches: 68, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
100 68 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (100 bp):
AACGCCATATCCCAGACATGGTATTACATGGGACCTCTCATATCGATGCCAATGCCATGTCCCAG
ACATGGTCTTACAGGGGACTTCTTATCTCGGTGCC
Found at i:44353560 original size:30 final size:30
Alignment explanation
Indices: 44353526--44353589 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
44353516 CCTTGACTCG
* *
44353526 AACTTTGGGAAAATTACAATTTTGCCCCTA
1 AACTTTGGCAAAATTACAATTTTGCCCCAA
* * *
44353556 AACTTTTGCATAATTACACTTTTGCCCCAA
1 AACTTTGGCAAAATTACAATTTTGCCCCAA
44353586 AACT
1 AACT
44353590 CAGAAATTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.33, C:0.23, G:0.09, T:0.34
Consensus pattern (30 bp):
AACTTTGGCAAAATTACAATTTTGCCCCAA
Found at i:44356064 original size:37 final size:36
Alignment explanation
Indices: 44355998--44356111 Score: 104
Period size: 37 Copynumber: 3.1 Consensus size: 36
44355988 GAGTACACAA
*
44355998 CTAATCCAACCGAAACACGCCAAACGCTCATAAGAG
1 CTAATCCAACCAAAACACGCCAAACGCTCATAAGAG
** *
44356034 CTAATCCAACCAATAACACGCTGAATGCTCATAAGAG
1 CTAATCCAACCAA-AACACGCCAAACGCTCATAAGAG
* * ** * *
44356071 CAAACCCAACTGTAAACATGCCAAATG-TGCATAAGAG
1 CTAATCCAAC-CAAAACACGCCAAACGCT-CATAAGAG
44356108 CTAA
1 CTAA
44356112 GCATTTGCCC
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
36 13 0.21
37 49 0.78
38 1 0.02
ACGTcount: A:0.42, C:0.28, G:0.14, T:0.16
Consensus pattern (36 bp):
CTAATCCAACCAAAACACGCCAAACGCTCATAAGAG
Found at i:44368800 original size:26 final size:26
Alignment explanation
Indices: 44368764--44368840 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
44368754 ACCAACACAC
44368764 CAATATCGCAGCAAAGCTGCCAGTAA
1 CAATATCGCAGCAAAGCTGCCAGTAA
* * * **
44368790 TAGTATTGCAGCAAAGCTGGTAGTAA
1 CAATATCGCAGCAAAGCTGCCAGTAA
*
44368816 CAATATCACAGCAAAGCTGCCAGTA
1 CAATATCGCAGCAAAGCTGCCAGTA
44368841 CAGTGTACTT
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (26 bp):
CAATATCGCAGCAAAGCTGCCAGTAA
Found at i:44395226 original size:50 final size:50
Alignment explanation
Indices: 44395120--44395341 Score: 309
Period size: 50 Copynumber: 4.3 Consensus size: 50
44395110 GGGAATGAGA
*
44395120 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTAAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C-CT-AG---ATGAGAGG
*
44395176 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCTAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGG
*
44395226 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGG
** * * **
44395276 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGG
44395326 TCCCATGTAAGACCAT
1 TCCCATGTAAGACCAT
44395342 ATCTAGGATA
Statistics
Matches: 153, Mismatches: 13, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
50 113 0.74
53 2 0.01
54 1 0.01
55 1 0.01
56 36 0.24
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATGAGAGG
Found at i:44401059 original size:143 final size:143
Alignment explanation
Indices: 44400880--44401165 Score: 572
Period size: 143 Copynumber: 2.0 Consensus size: 143
44400870 TAGTCAAAAG
44400880 GATAAAATTATAAAAAGTGAAAAAAGTTGAGTTCTACATGTTTGAGGTGTCCAATTGTTATGAAA
1 GATAAAATTATAAAAAGTGAAAAAAGTTGAGTTCTACATGTTTGAGGTGTCCAATTGTTATGAAA
44400945 TTTTAAATTGAAGGTCCGTATATGGTAATTAGACCATTGGTTAAGTTGGTAGACAAAAATGGACA
66 TTTTAAATTGAAGGTCCGTATATGGTAATTAGACCATTGGTTAAGTTGGTAGACAAAAATGGACA
44401010 TGGTTAGGCATGT
131 TGGTTAGGCATGT
44401023 GATAAAATTATAAAAAGTGAAAAAAGTTGAGTTCTACATGTTTGAGGTGTCCAATTGTTATGAAA
1 GATAAAATTATAAAAAGTGAAAAAAGTTGAGTTCTACATGTTTGAGGTGTCCAATTGTTATGAAA
44401088 TTTTAAATTGAAGGTCCGTATATGGTAATTAGACCATTGGTTAAGTTGGTAGACAAAAATGGACA
66 TTTTAAATTGAAGGTCCGTATATGGTAATTAGACCATTGGTTAAGTTGGTAGACAAAAATGGACA
44401153 TGGTTAGGCATGT
131 TGGTTAGGCATGT
44401166 TTCCAAAGTT
Statistics
Matches: 143, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
143 143 1.00
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.33
Consensus pattern (143 bp):
GATAAAATTATAAAAAGTGAAAAAAGTTGAGTTCTACATGTTTGAGGTGTCCAATTGTTATGAAA
TTTTAAATTGAAGGTCCGTATATGGTAATTAGACCATTGGTTAAGTTGGTAGACAAAAATGGACA
TGGTTAGGCATGT
Found at i:44401660 original size:50 final size:50
Alignment explanation
Indices: 44401593--44401828 Score: 217
Period size: 50 Copynumber: 4.7 Consensus size: 50
44401583 GGGAATGAGA
* * *
44401593 TCCCATGTAACACCATGTCTGGGACATGGAATTTGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * *
44401643 TCCCATTTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
*** * * * **
44401693 TCCCCCATAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * * * **
44401743 TCCCATGTAAGACCATATCTAGGATATGGCATT--CACAGTACGA-GAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-A-GATGAGAGG
* * *
44401792 TCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
44401829 TGTTGTATTC
Statistics
Matches: 147, Mismatches: 35, Indels: 7
0.78 0.19 0.04
Matches are distributed among these distances:
48 3 0.02
49 31 0.21
50 111 0.76
51 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:44402058 original size:16 final size:17
Alignment explanation
Indices: 44402007--44402064 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 17
44401997 GCAACGAAGG
* *
44402007 AGTAAGTTAAGCAAGCA
1 AGTAAGTAAAGCAAGAA
*
44402024 AGTAAGTAAACGAGTAAGAA
1 AGTAAGT-AA--AGCAAGAA
44402044 AGTAAGTAAAG-AAGAA
1 AGTAAGTAAAGCAAGAA
44402060 AGTAA
1 AGTAA
44402065 AGATCTTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
16 10 0.29
17 9 0.26
18 1 0.03
19 2 0.06
20 13 0.37
ACGTcount: A:0.55, C:0.05, G:0.24, T:0.16
Consensus pattern (17 bp):
AGTAAGTAAAGCAAGAA
Found at i:44408451 original size:22 final size:22
Alignment explanation
Indices: 44408376--44408452 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 22
44408366 TGGACAAGCC
*
44408376 ACCAATGATTTGCAGATAAACT
1 ACCACTGATTTGCAGATAAACT
* * * *
44408398 ACCACTGATAACACTTTGTAGACAAGCC
1 ACCACTG-----A-TTTGCAGATAAACT
44408426 ACCACTGATTTGCAGATAAACT
1 ACCACTGATTTGCAGATAAACT
44408448 ACCAC
1 ACCAC
44408453 ATACTTCCAC
Statistics
Matches: 40, Mismatches: 9, Indels: 12
0.66 0.15 0.20
Matches are distributed among these distances:
22 21 0.52
23 1 0.03
27 1 0.03
28 17 0.43
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.23
Consensus pattern (22 bp):
ACCACTGATTTGCAGATAAACT
Found at i:44415740 original size:22 final size:22
Alignment explanation
Indices: 44415692--44415742 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
44415682 AGAGCCAAAC
* *
44415692 AAGCATAAACAAAAAAAATAGC
1 AAGCAAAAACAAAAAAAATAGA
*
44415714 AAGCAAAAACAACAAAAA-AGA
1 AAGCAAAAACAAAAAAAATAGA
44415735 ATAGCAAA
1 A-AGCAAA
44415743 GAAGAAAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 3 0.12
22 22 0.88
ACGTcount: A:0.71, C:0.14, G:0.10, T:0.06
Consensus pattern (22 bp):
AAGCAAAAACAAAAAAAATAGA
Found at i:44415913 original size:26 final size:23
Alignment explanation
Indices: 44415866--44415912 Score: 76
Period size: 25 Copynumber: 2.0 Consensus size: 23
44415856 CAAAGGAGAA
44415866 ATAGAAAAAGGAAAGAAAAAAAT
1 ATAGAAAAAGGAAAGAAAAAAAT
44415889 ATAGAAGAAAGGGAAAGAAAAAAA
1 ATAGAA-AAA-GGAAAGAAAAAAA
44415913 AGAAGAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 6 0.27
24 3 0.14
25 13 0.59
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.06
Consensus pattern (23 bp):
ATAGAAAAAGGAAAGAAAAAAAT
Found at i:44415919 original size:25 final size:23
Alignment explanation
Indices: 44415868--44415922 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 23
44415858 AAGGAGAAAT
*
44415868 AGAAAAAGGAAAGAAAAAAATAT
1 AGAAAAAGGAAAGAAAAAAATAA
44415891 AGAAGAAAGGGAAAGAAAAAAA-AGA
1 AGAA-AAA-GGAAAGAAAAAAATA-A
44415916 AGAAAAA
1 AGAAAAA
44415923 AATGAACGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 4 0.14
24 7 0.25
25 17 0.61
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.04
Consensus pattern (23 bp):
AGAAAAAGGAAAGAAAAAAATAA
Found at i:44416266 original size:17 final size:18
Alignment explanation
Indices: 44416246--44416289 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
44416236 GAAAGGAACG
*
44416246 GAGAAGAAG-AAGAAAAA
1 GAGAAAAAGAAAGAAAAA
44416263 GAGAAAAAGAAAGAAAAA
1 GAGAAAAAGAAAGAAAAA
44416281 GAGGAAAAA
1 GA-GAAAAA
44416290 TAATATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 8 0.33
18 10 0.42
19 6 0.25
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (18 bp):
GAGAAAAAGAAAGAAAAA
Found at i:44416273 original size:23 final size:23
Alignment explanation
Indices: 44416223--44416282 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
44416213 TTTCGGCCCG
* *
44416223 AAGAAGAAGAAGAGAAAGGAACG
1 AAGAAGAAGAAGAAAAAGGAACA
*
44416246 GAGAAGAAGAAGAAAAAGAGAA-A
1 AAGAAGAAGAAGAAAAAG-GAACA
*
44416269 AAGAAAGAAAAAGA
1 AAG-AAGAAGAAGA
44416283 GGAAAAATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 18 0.60
24 12 0.40
ACGTcount: A:0.68, C:0.02, G:0.30, T:0.00
Consensus pattern (23 bp):
AAGAAGAAGAAGAAAAAGGAACA
Found at i:44418265 original size:12 final size:12
Alignment explanation
Indices: 44418248--44418279 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
44418238 TAGGAAGGTG
44418248 TTATTAGGCATT
1 TTATTAGGCATT
*
44418260 TTATTAGACATT
1 TTATTAGGCATT
44418272 TTATTAGG
1 TTATTAGG
44418280 AAGGTGTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.16, T:0.50
Consensus pattern (12 bp):
TTATTAGGCATT
Found at i:44425367 original size:75 final size:74
Alignment explanation
Indices: 44425265--44425800 Score: 533
Period size: 75 Copynumber: 7.0 Consensus size: 74
44425255 AGTTTTTTTT
* * *
44425265 AAATCAACTCATAATGCGATAGGTGAGTTGAGCCACGGATCACACACCGAGGTATTTTCAATTTT
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGATCACACGCCGAGGTATTTTCAATTTT
44425330 TGTTTTTCAA
66 T-TTTTTCAA
* * * *
44425340 AAATAAACTCATAATGCGAGAGGTGAGTTAAGCCTCGGA-CATATGCCGAGGTATTTTTCAATTT
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGATCACACGCCGAGGTA-TTTTCAATTT
** *
44425404 CATTTTAAAAAATAATA
65 --TTTT----TTTCA-A
*
44425421 ATAATCAACTCATAATGCGAGAGGTGAGTAGAGCCTCAGG--CACACGCCGAGGTATTTTTCAAT
1 A-AATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC-GGATCACACGCCGAGGTA-TTTTCAA-
44425484 TTCTGTTTTTTTCAA
62 TT-T-TTTTTTTCAA
* * * * *
44425499 AAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTCGCACACTGAGGTATTTTCAATTTT
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGATCACACGCCGAGGTATTTTCAATTTT
44425564 TATTTTTCAA
66 T-TTTTTCAA
* * * *
44425574 AAATCAACTCATAATGAGAGAGGTGAGTTGAGCCTCAGA-CCCATGCCGAGGTATTTTTCAATTT
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGATCACACGCCGAGGTA-TTTTCAATTT
***
44425638 CATTTTTAAAAA
65 --TTTTTTTCAA
* * * *
44425650 AAATCAACTCATAATGCGAGTGGTGAGTTGAGCCTCAGG-TCGCACGCTGAGGTATTTCCAATTT
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC-GGATCACACGCCGAGGTATTTTCAATTT
*
44425714 ATGTTTTTCAA
65 -TTTTTTTCAA
* * * **
44425725 AAATCAACTCATAATCCAAGAGGTGAGTTGAGCCTCGGGTCACACGCTAAGGTATTTTCAATTTC
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGATCACACGCCGAGGTATTTTCAATTT-
*
44425790 TATTTTTCAA
65 TTTTTTTCAA
44425800 A
1 A
44425801 TAAATAATAA
Statistics
Matches: 386, Mismatches: 54, Indels: 42
0.80 0.11 0.09
Matches are distributed among these distances:
74 25 0.06
75 171 0.44
76 54 0.14
77 56 0.15
78 13 0.03
79 2 0.01
80 2 0.01
81 2 0.01
82 52 0.13
83 8 0.02
84 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (74 bp):
AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGATCACACGCCGAGGTATTTTCAATTTT
TTTTTTCAA
Found at i:44425703 original size:151 final size:149
Alignment explanation
Indices: 44425265--44425800 Score: 569
Period size: 151 Copynumber: 3.5 Consensus size: 149
44425255 AGTTTTTTTT
* * * * *
44425265 AAATCAACTCATAATGCGATAGGTGAGTTGAGCCACGGATCACACACCGAGGTA-TTTTCAATTT
1 AAATCAACTCATAATGAGAGAGGTGAGTTGAGCCTCAGA-CACACGCCGAGGTATTTTTCAATTT
* * * ** * *
44425329 -TTGTTTTTCAAAAATAAACTCATAATGCGAGAGGTGAGTTAAGCCTCGGACATATGCCGAGGTA
65 CTT-TTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGTCGCACGCTGAGGTA
* *
44425393 TTTTTCAA-TTTCATTTTAAAAAATAATA
129 -TTTTCAATTTTTATTTT------TCA-A
* * *
44425421 ATAATCAACTCATAATGCGAGAGGTGAGTAGAGCCTCAGGCACACGCCGAGGTATTTTTCAATTT
1 A-AATCAACTCATAATGAGAGAGGTGAGTTGAGCCTCAGACACACGCCGAGGTATTTTTCAATTT
* *
44425486 CTGTTTTTTTCAAAAATCAACTCATAATGCGAGAGATGAGTTGAGCCTCGGGTCGCACACTGAGG
65 C--TTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC-GGTCGCACGCTGAGG
44425551 TATTTTCAATTTTTATTTTTCAA
127 TATTTTCAATTTTTATTTTTCAA
* *
44425574 AAATCAACTCATAATGAGAGAGGTGAGTTGAGCCTCAGACCCATGCCGAGGTATTTTTCAATTTC
1 AAATCAACTCATAATGAGAGAGGTGAGTTGAGCCTCAGACACACGCCGAGGTATTTTTCAATTTC
*** *
44425639 ATTTTTAAAAAAAATCAACTCATAATGCGAGTGGTGAGTTGAGCCTCAGGTCGCACGCTGAGGTA
66 -TTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC-GGTCGCACGCTGAGGTA
* * *
44425704 TTTCCAATTTATGTTTTTCAA
129 TTTTCAATTTTTATTTTTCAA
* * * **
44425725 AAATCAACTCATAATCCA-AGAGGTGAGTTGAGCCTCGGGTCACACGCTAAGGTA-TTTTCAATT
1 AAATCAACTCATAAT-GAGAGAGGTGAGTTGAGCCTC-AGACACACGCCGAGGTATTTTTCAATT
*
44425788 TCTATTTTTCAAA
64 TCTTTTTTTCAAA
44425801 TAAATAATAA
Statistics
Matches: 327, Mismatches: 44, Indels: 24
0.83 0.11 0.06
Matches are distributed among these distances:
150 7 0.02
151 119 0.36
152 71 0.22
153 2 0.01
154 2 0.01
156 14 0.04
157 43 0.13
159 48 0.15
160 21 0.06
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (149 bp):
AAATCAACTCATAATGAGAGAGGTGAGTTGAGCCTCAGACACACGCCGAGGTATTTTTCAATTTC
TTTTTTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGTCGCACGCTGAGGTATT
TTCAATTTTTATTTTTCAA
Found at i:44426160 original size:30 final size:29
Alignment explanation
Indices: 44426126--44426196 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 29
44426116 AAAAAAAATA
*
44426126 AAATTTACATTTTGACCCTTAA-ATTTTTCT
1 AAATTTACATTTTGACCC-TAACA-TTTTAT
44426156 AAATTTACATTTTGACCCTAACATTTTAT
1 AAATTTACATTTTGACCCTAACATTTTAT
44426185 AAA-TTACATTTT
1 AAATTTACATTTT
44426197 AGCCTCTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 9 0.23
29 11 0.28
30 19 0.49
ACGTcount: A:0.34, C:0.15, G:0.03, T:0.48
Consensus pattern (29 bp):
AAATTTACATTTTGACCCTAACATTTTAT
Found at i:44426205 original size:29 final size:29
Alignment explanation
Indices: 44426150--44426270 Score: 83
Period size: 28 Copynumber: 4.2 Consensus size: 29
44426140 ACCCTTAAAT
*
44426150 TTTTCTAAATTTACATTTT-GACCCT-AACA
1 TTTTATAAA-TTACATTTTAG-CCCTAAACA
*
44426179 TTTTATAAATTACATTTTAGCCTCTAAACT
1 TTTTATAAATTACATTTTAGCC-CTAAACA
* **
44426209 TTTTGA-AAATT-CTATTTTAGCCCCAAATT
1 TTTT-ATAAATTAC-ATTTTAGCCCTAAACA
* *
44426238 TTTTA-AAATTGCACTTTT-GCCCTAAAAA
1 TTTTATAAATTACA-TTTTAGCCCTAAACA
44426266 TTTTA
1 TTTTA
44426271 CGTCTTCTAC
Statistics
Matches: 78, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
28 30 0.38
29 26 0.33
30 21 0.27
31 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.05, T:0.45
Consensus pattern (29 bp):
TTTTATAAATTACATTTTAGCCCTAAACA
Found at i:44426755 original size:26 final size:28
Alignment explanation
Indices: 44426710--44426773 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
44426700 AAGAAAGGAG
44426710 AAAAAGA--AAAGGGAAAG-AAAAAA-A
1 AAAAAGATGAAAGGGAAAGAAAAAAAGA
* *
44426734 ATAAAGATGAAAGGGAATGAAAAAAAGA
1 AAAAAGATGAAAGGGAAAGAAAAAAAGA
44426762 AAAAAGATGAAA
1 AAAAAGATGAAA
44426774 AAAAGGAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 6 0.18
26 9 0.27
27 6 0.18
28 12 0.36
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (28 bp):
AAAAAGATGAAAGGGAAAGAAAAAAAGA
Found at i:44426989 original size:20 final size:23
Alignment explanation
Indices: 44426966--44427011 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 23
44426956 ATAGCAAAAC
44426966 AAGAAAGAA-AAGAA-AG-GGAG
1 AAGAAAGAAGAAGAAGAGAGGAG
*
44426986 AAGAGAGAAGAAGAAGAGAGGAG
1 AAGAAAGAAGAAGAAGAGAGGAG
44427009 AAG
1 AAG
44427012 CAGCAACGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 8 0.36
21 5 0.23
22 2 0.09
23 7 0.32
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (23 bp):
AAGAAAGAAGAAGAAGAGAGGAG
Found at i:44427128 original size:9 final size:8
Alignment explanation
Indices: 44427116--44427173 Score: 53
Period size: 9 Copynumber: 6.5 Consensus size: 8
44427106 GGAGAAGAAG
44427116 AAAAAGGA
1 AAAAAGGA
44427124 GAAAAAGGAA
1 -AAAAAGG-A
*
44427134 TAAAAAAGA
1 -AAAAAGGA
44427143 AAAAAGGGAA
1 AAAAA-GG-A
44427153 AAAAAGGA
1 AAAAAGGA
44427161 AAAAGAGGA
1 AAAA-AGGA
44427170 AAAA
1 AAAA
44427174 TAATATATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
8 10 0.24
9 19 0.45
10 13 0.31
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (8 bp):
AAAAAGGA
Found at i:44427172 original size:17 final size:17
Alignment explanation
Indices: 44427125--44427173 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
44427115 GAAAAAGGAG
*
44427125 AAAAAGGAATAAAAAAGA
1 AAAAAGGGA-AAAAAAGA
*
44427143 AAAAAGGGAAAAAAAGG
1 AAAAAGGGAAAAAAAGA
44427160 AAAAAGAGGAAAAA
1 AAAAAG-GGAAAAA
44427174 TAATATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 13 0.46
18 15 0.54
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (17 bp):
AAAAAGGGAAAAAAAGA
Found at i:44428672 original size:74 final size:74
Alignment explanation
Indices: 44428533--44428694 Score: 173
Period size: 74 Copynumber: 2.2 Consensus size: 74
44428523 TAATTTATCT
* * * **
44428533 GAAAACAGGCCAAATGATCATAAGAGCTCATCGACCCGATAACACGCCAATTGCTTTGAAGAGCT
1 GAAAACAGGCCAAATGATCATAAGAGCTAATCCACCCAATAACACGCCAATTGCTCCGAAGAGCT
44428598 AATCCAACC
66 AATCCAACC
* * * * * *
44428607 GAAAACATGTCAAATGCTCATTAGAGCTAATCCACCCAATAACATGCTAATTGCTCCGTAA-AGC
1 GAAAACAGGCCAAATGATCATAAGAGCTAATCCACCCAATAACACGCCAATTGCTCCG-AAGAGC
* *
44428671 TAGTCTAACC
65 TAATCCAACC
* *
44428681 AAAAACAGTCCAAA
1 GAAAACAGGCCAAA
44428695 ACAGGGGGTA
Statistics
Matches: 70, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
74 68 0.97
75 2 0.03
ACGTcount: A:0.40, C:0.26, G:0.15, T:0.20
Consensus pattern (74 bp):
GAAAACAGGCCAAATGATCATAAGAGCTAATCCACCCAATAACACGCCAATTGCTCCGAAGAGCT
AATCCAACC
Found at i:44429656 original size:21 final size:22
Alignment explanation
Indices: 44429617--44429659 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
44429607 GAAGATGAAA
* *
44429617 TGTTTTATTCTTTCTTTAATTT
1 TGTTTTAATCTTTCATTAATTT
44429639 TGTTTTAAT-TTTCATTAATTT
1 TGTTTTAATCTTTCATTAATTT
44429660 ACAAAATTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.19, C:0.07, G:0.05, T:0.70
Consensus pattern (22 bp):
TGTTTTAATCTTTCATTAATTT
Found at i:44431365 original size:33 final size:32
Alignment explanation
Indices: 44431323--44431470 Score: 99
Period size: 33 Copynumber: 4.4 Consensus size: 32
44431313 GTGGATTCAA
44431323 CACTTAGCAACCACCAGTGATTCGGGGAATCAG
1 CACTTAGCAACCACCA-TGATTCGGGGAATCAG
* * *
44431356 CACTTAGCAACCCCTTTCACATTCAAATATATGGTGGAATCAG
1 CACTTAGCAA--CC--AC-CA-T--GAT-T-CGG-GGAATCAG
44431399 CACTTAGCAACCACCAATGATTCGGGGAATCAG
1 CACTTAGCAACCACC-ATGATTCGGGGAATCAG
* *
44431432 CACTTAGCAGCC-CC----TTGGGGGAATCAG
1 CACTTAGCAACCACCATGATTCGGGGAATCAG
44431459 CACTTAGCAACC
1 CACTTAGCAACC
44431471 CCCTTCACAT
Statistics
Matches: 94, Mismatches: 10, Indels: 28
0.71 0.08 0.21
Matches are distributed among these distances:
27 23 0.24
32 2 0.02
33 29 0.31
34 2 0.02
35 3 0.03
36 2 0.02
37 1 0.01
38 5 0.05
39 2 0.02
40 2 0.02
41 3 0.03
42 2 0.02
43 18 0.19
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (32 bp):
CACTTAGCAACCACCATGATTCGGGGAATCAG
Found at i:44431529 original size:102 final size:103
Alignment explanation
Indices: 44431346--44431677 Score: 477
Period size: 103 Copynumber: 3.2 Consensus size: 103
44431336 CCAGTGATTC
* * *
44431346 GGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAATATATGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
* *
44431411 ACCAATGATTCGGGGAATCAGCACTTAGCAGCCCCTTG
66 ACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
* * *
44431449 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAA-ATACAGTGGGATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
* *
44431513 AACAATGAATCGGGGAATCAGCACTTAGCAAACCCTTG
66 ACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
* * * * * * *
44431551 GGGGAATCAACACTTAGCATCCCCCTTTATAATCAAAGATACGGTGGAATCAGCACTTAGTAAAC
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
* * *
44431616 ACCAATGAGTCAGGGAATCAACACTTAGCAACCCCTTG
66 ACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
44431654 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
44431678 TTTTATATTT
Statistics
Matches: 202, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
102 89 0.44
103 113 0.56
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (103 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAACC
ACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTG
Found at i:44431667 original size:27 final size:27
Alignment explanation
Indices: 44431628--44431679 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
44431618 CAATGAGTCA
44431628 GGGAATCAACACTTAGCAACCCCTTGG
1 GGGAATCAACACTTAGCAACCCCTTGG
*
44431655 GGGAATCAGCACTTAGCAACCCCTT
1 GGGAATCAACACTTAGCAACCCCTT
44431680 TTATATTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (27 bp):
GGGAATCAACACTTAGCAACCCCTTGG
Found at i:44438218 original size:54 final size:53
Alignment explanation
Indices: 44438152--44438265 Score: 174
Period size: 54 Copynumber: 2.1 Consensus size: 53
44438142 TCGAAGTAGG
* *
44438152 GACACACGCCGTGTCCCAGCCCATGTCATAGACCATGTAACTCACTAACTTGA
1 GACACACGCCGTGTCCCAACCCATGTCATAGACCATGTAACTCACTAACTTAA
* * *
44438205 GACACACGACCGTGTCTCAACCCGTGTCATAGACCGTGTAACTCACTAACTTAA
1 GACACACG-CCGTGTCCCAACCCATGTCATAGACCATGTAACTCACTAACTTAA
44438259 GACACAC
1 GACACAC
44438266 AGTCATGTCT
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 8 0.15
54 47 0.85
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (53 bp):
GACACACGCCGTGTCCCAACCCATGTCATAGACCATGTAACTCACTAACTTAA
Found at i:44439195 original size:20 final size:20
Alignment explanation
Indices: 44439180--44439248 Score: 86
Period size: 20 Copynumber: 3.5 Consensus size: 20
44439170 GGGCACCAGA
44439180 GTGCATTCAGGGGCACAAAT
1 GTGCATTCAGGGGCACAAAT
* * **
44439200 GTGCAATCAAGGGCACCGGA-
1 GTGCATTCAGGGGCA-CAAAT
44439220 GTGCATTCAGGGGCACAAAT
1 GTGCATTCAGGGGCACAAAT
44439240 GTGCATTCA
1 GTGCATTCA
44439249 AAGGCACCGA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
19 2 0.05
20 35 0.90
21 2 0.05
ACGTcount: A:0.29, C:0.22, G:0.30, T:0.19
Consensus pattern (20 bp):
GTGCATTCAGGGGCACAAAT
Found at i:44439215 original size:40 final size:39
Alignment explanation
Indices: 44439169--44439264 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 39
44439159 GTGTGCACTT
44439169 AGGGCACCAGAGTGCATTCAGGGGCACAAATGTGCAATCA
1 AGGGCACC-GAGTGCATTCAGGGGCACAAATGTGCAATCA
*
44439209 AGGGCACCGGAGTGCATTCAGGGGCACAAATGTGCATTCA
1 AGGGCACC-GAGTGCATTCAGGGGCACAAATGTGCAATCA
*
44439249 AAGGCACCGAAGTGCA
1 AGGGCACCG-AGTGCA
44439265 AACTGGGGTA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
39 1 0.02
40 51 0.98
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (39 bp):
AGGGCACCGAGTGCATTCAGGGGCACAAATGTGCAATCA
Found at i:44439263 original size:20 final size:20
Alignment explanation
Indices: 44439169--44439264 Score: 81
Period size: 20 Copynumber: 4.8 Consensus size: 20
44439159 GTGTGCACTT
44439169 AGGGCACC-AGAGTGCATTCA
1 AGGGCACCGA-AGTGCATTCA
* * *
44439189 GGGGCA-CAAATGTGCAATCA
1 AGGGCACCGAA-GTGCATTCA
*
44439209 AGGGCACCGGAGTGCATTCA
1 AGGGCACCGAAGTGCATTCA
* *
44439229 GGGGCA-CAAATGTGCATTCA
1 AGGGCACCGAA-GTGCATTCA
*
44439249 AAGGCACCGAAGTGCA
1 AGGGCACCGAAGTGCA
44439265 AACTGGGGTA
Statistics
Matches: 59, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
19 4 0.07
20 50 0.85
21 5 0.08
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (20 bp):
AGGGCACCGAAGTGCATTCA
Found at i:44455430 original size:30 final size:30
Alignment explanation
Indices: 44455394--44455455 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
44455384 TTGAAAGTAG
44455394 ACTCAATAATAATTTATACATGTAAATTTA
1 ACTCAATAATAATTTATACATGTAAATTTA
44455424 ACTCAATAATAATTTATACATGTAAATTTA
1 ACTCAATAATAATTTATACATGTAAATTTA
44455454 AC
1 AC
44455456 CCCTAATTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.47, C:0.11, G:0.03, T:0.39
Consensus pattern (30 bp):
ACTCAATAATAATTTATACATGTAAATTTA
Found at i:44456510 original size:37 final size:37
Alignment explanation
Indices: 44456469--44456542 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
44456459 TACTAAACAA
44456469 GAGTAAGGCCTAATTCATTCAAAATACCAAAATTTTC
1 GAGTAAGGCCTAATTCATTCAAAATACCAAAATTTTC
44456506 GAGTAAGGCCTAATTCATTCAAAATACCAAAATTTTC
1 GAGTAAGGCCTAATTCATTCAAAATACCAAAATTTTC
44456543 CCAAGCGAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.30
Consensus pattern (37 bp):
GAGTAAGGCCTAATTCATTCAAAATACCAAAATTTTC
Found at i:44463117 original size:5 final size:5
Alignment explanation
Indices: 44463107--44463162 Score: 112
Period size: 5 Copynumber: 11.2 Consensus size: 5
44463097 CAATTACACA
44463107 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG
1 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG
44463157 ATATG A
1 ATATG A
44463163 ATGTTCATGG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 51 1.00
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (5 bp):
ATATG
Found at i:44463817 original size:48 final size:48
Alignment explanation
Indices: 44463746--44463843 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
44463736 TAGAGTAAGT
44463746 TTGAATAATATCGAATTAGAGTATGACTTTGTTAGTAGTCTAATGGTA
1 TTGAATAATATCGAATTAGAGTATGACTTTGTTAGTAGTCTAATGGTA
*
44463794 TTGAATAATATTGAATTAGAGTATGACTTTGTTAGTAGTCTAATGGTA
1 TTGAATAATATCGAATTAGAGTATGACTTTGTTAGTAGTCTAATGGTA
44463842 TT
1 TT
44463844 CAAATTTGAG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.33, C:0.05, G:0.20, T:0.42
Consensus pattern (48 bp):
TTGAATAATATCGAATTAGAGTATGACTTTGTTAGTAGTCTAATGGTA
Found at i:44470409 original size:21 final size:21
Alignment explanation
Indices: 44470368--44470412 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
44470358 TGTTTTTTTA
*
44470368 AAATAATTATTAAATACTATT
1 AAATAATTATTAAAAACTATT
*
44470389 AAATAATTA-TAGAAAATTATT
1 AAATAATTATTA-AAAACTATT
44470410 AAA
1 AAA
44470413 AATATTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (21 bp):
AAATAATTATTAAAAACTATT
Found at i:44470735 original size:10 final size:10
Alignment explanation
Indices: 44470707--44470771 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
44470697 TCATTTTCTA
44470707 ATTATGTTAT
1 ATTATGTTAT
*
44470717 -TTAT-ATAT
1 ATTATGTTAT
44470725 ATTATGTTAT
1 ATTATGTTAT
*
44470735 ATTATTTTATT
1 ATTATGTTA-T
* *
44470746 TTTATCTTCAT
1 ATTATGTT-AT
*
44470757 ATTATTTTAT
1 ATTATGTTAT
44470767 ATTAT
1 ATTAT
44470772 CATATATATA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
8 3 0.07
9 8 0.18
10 18 0.41
11 14 0.32
12 1 0.02
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (10 bp):
ATTATGTTAT
Found at i:44470780 original size:22 final size:21
Alignment explanation
Indices: 44470708--44470783 Score: 73
Period size: 21 Copynumber: 3.5 Consensus size: 21
44470698 CATTTTCTAA
* *
44470708 TTATGTTATTTATATATATTATG
1 TTATATTATTT-TAT-TATTATC
*
44470731 TTATATTATTTTATTTTTATC
1 TTATATTATTTTATTATTATC
44470752 TTCATATTATTTTA-TATTATC
1 TT-ATATTATTTTATTATTATC
*
44470773 ATATATATATT
1 TTATAT-TATT
44470784 ATCTATAGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
20 4 0.09
21 18 0.39
22 14 0.30
23 10 0.22
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (21 bp):
TTATATTATTTTATTATTATC
Found at i:44472485 original size:42 final size:43
Alignment explanation
Indices: 44472341--44472507 Score: 203
Period size: 43 Copynumber: 3.9 Consensus size: 43
44472331 CGCTAAAGGC
* *
44472341 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAT
1 CATGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTATAGAT
* * * *
44472384 CATGACCTTTAGCGGCGCTTGTT-TCATAAATGCCGCTATAGAT
1 CATGACCTTTAGCGACGCTT-TTCCCACAAACGCCGCTATAGAT
* * * *
44472427 CATGACCTTTAACGACGCTTTTCACACAAAAG-TGCTATAGAT
1 CATGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTATAGAT
* *
44472469 CATGACTTTTAGCGACGCTTTTCCCACAAACGTCGCTAT
1 CATGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTAT
44472508 TGTTTGGTGA
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
42 39 0.37
43 65 0.61
44 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (43 bp):
CATGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTATAGAT
Found at i:44472507 original size:85 final size:86
Alignment explanation
Indices: 44472341--44472507 Score: 203
Period size: 85 Copynumber: 2.0 Consensus size: 86
44472331 CGCTAAAGGC
* * * * *
44472341 CATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTGT
1 CATGACCTTTAACGACGCTTTTCACACAAAAGCCGCTAAAGATCATGACCTTTAGCGACGCTTGT
* * *
44472406 TTCATAAATGCCGCTATAGAT
66 TCCACAAACGCCGCTATAGAT
* * *
44472427 CATGACCTTTAACGACGCTTTTCACACAAAAG-TGCTATAGATCATGACTTTTAGCGACGCTT-T
1 CATGACCTTTAACGACGCTTTTCACACAAAAGCCGCTAAAGATCATGACCTTTAGCGACGCTTGT
*
44472490 TCCCACAAACGTCGCTAT
66 T-CCACAAACGCCGCTAT
44472508 TGTTTGGTGA
Statistics
Matches: 68, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
84 2 0.03
85 38 0.56
86 28 0.41
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (86 bp):
CATGACCTTTAACGACGCTTTTCACACAAAAGCCGCTAAAGATCATGACCTTTAGCGACGCTTGT
TCCACAAACGCCGCTATAGAT
Found at i:44472928 original size:21 final size:21
Alignment explanation
Indices: 44472902--44472972 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
44472892 TTTTGCTCTA
44472902 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * *
44472923 CTCTGCTTCTCTCACTACAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
44472944 CTCTGCTTCCCTCGCTGCTGC
1 CTCTGCTTCCCTCGCTGCAGC
44472965 CTCTGCTT
1 CTCTGCTT
44472973 TAAGTTGTAC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.06, C:0.45, G:0.15, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:44474886 original size:9 final size:9
Alignment explanation
Indices: 44474869--44475079 Score: 221
Period size: 9 Copynumber: 24.8 Consensus size: 9
44474859 TATATATTAA
*
44474869 GTAAATTAT
1 GTAAGTTAT
44474878 GTAAGTTAT
1 GTAAGTTAT
44474887 GT-A-TTAT
1 GTAAGTTAT
*
44474894 ATAAGTTAT
1 GTAAGTTAT
*
44474903 GTAAGTTCT
1 GTAAGTTAT
44474912 GTAAGTTAT
1 GTAAGTTAT
44474921 GT-A-TTAT
1 GTAAGTTAT
**
44474928 GTAAGCCAT
1 GTAAGTTAT
44474937 GTAAGTTAT
1 GTAAGTTAT
44474946 GT-A-TTAT
1 GTAAGTTAT
*
44474953 GTATGTTAT
1 GTAAGTTAT
*
44474962 GTAAGTTGT
1 GTAAGTTAT
44474971 GT-A-TTAT
1 GTAAGTTAT
*
44474978 GTATGTTAT
1 GTAAGTTAT
*
44474987 GTAAGTTGT
1 GTAAGTTAT
*
44474996 GT-AG-AAT
1 GTAAGTTAT
44475003 GTAAGTTAT
1 GTAAGTTAT
44475012 GTAAGTTAT
1 GTAAGTTAT
44475021 GTAAGTTAT
1 GTAAGTTAT
*
44475030 ATAAGTTAT
1 GTAAGTTAT
44475039 GTAAGTTAT
1 GTAAGTTAT
*
44475048 GTAAGTTGT
1 GTAAGTTAT
*
44475057 GT-A-TAAT
1 GTAAGTTAT
44475064 GTAAGTTAT
1 GTAAGTTAT
44475073 GTAAGTT
1 GTAAGTT
44475080 GTTGAAGTCT
Statistics
Matches: 165, Mismatches: 25, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
7 29 0.18
8 12 0.07
9 124 0.75
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:44474886 original size:25 final size:25
Alignment explanation
Indices: 44474858--44474909 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
44474848 TGATATATAT
44474858 TTATATATTA-AGTAAATTATGTAAG
1 TTATATATTATA-TAAATTATGTAAG
* *
44474883 TTATGTATTATATAAGTTATGTAAG
1 TTATATATTATATAAATTATGTAAG
44474908 TT
1 TT
44474910 CTGTAAGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.48
Consensus pattern (25 bp):
TTATATATTATATAAATTATGTAAG
Found at i:44474920 original size:34 final size:35
Alignment explanation
Indices: 44474869--44475079 Score: 224
Period size: 34 Copynumber: 6.2 Consensus size: 35
44474859 TATATATTAA
* *
44474869 GTAAATTATGTAAGTTATGTA-TTATATAAGTTAT
1 GTAAGTTATGTAAGTTATGTAGTTATGTAAGTTAT
* **
44474903 GTAAGTTCTGTAAGTTATGTA-TTATGTAAGCCAT
1 GTAAGTTATGTAAGTTATGTAGTTATGTAAGTTAT
*
44474937 GTAAGTTATGT-A-TTATGTATGTTATGTAAGTTGT
1 GTAAGTTATGTAAGTTATGTA-GTTATGTAAGTTAT
* * *
44474971 GT-A-TTATGTATGTTATGTAAGTTGTGT-AG-AAT
1 GTAAGTTATGTAAGTTATGT-AGTTATGTAAGTTAT
*
44475003 GTAAGTTATGTAAGTTATGTAAGTTATATAAGTTAT
1 GTAAGTTATGTAAGTTATGT-AGTTATGTAAGTTAT
* *
44475039 GTAAGTTATGTAAGTTGTGTA-TAATGTAAGTTAT
1 GTAAGTTATGTAAGTTATGTAGTTATGTAAGTTAT
44475073 GTAAGTT
1 GTAAGTT
44475080 GTTGAAGTCT
Statistics
Matches: 148, Mismatches: 20, Indels: 18
0.80 0.11 0.10
Matches are distributed among these distances:
32 16 0.11
33 5 0.03
34 102 0.69
35 4 0.03
36 21 0.14
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.45
Consensus pattern (35 bp):
GTAAGTTATGTAAGTTATGTAGTTATGTAAGTTAT
Found at i:44474927 original size:25 final size:25
Alignment explanation
Indices: 44474873--44475075 Score: 207
Period size: 25 Copynumber: 8.0 Consensus size: 25
44474863 TATTAAGTAA
*
44474873 ATTATGTAAGTTATGT-A-TTATAT
1 ATTATGTAAGTTATGTAAGTTATGT
*
44474896 AAGTTATGTAAGTTCTGTAAGTTATGT
1 -A-TTATGTAAGTTATGTAAGTTATGT
**
44474923 ATTATGTAAGCCATGTAAGTTATGT
1 ATTATGTAAGTTATGTAAGTTATGT
* *
44474948 ATTATGTATGTTATGTAAGTTGTGT
1 ATTATGTAAGTTATGTAAGTTATGT
* *
44474973 ATTATGTATGTTATGTAAGTTGTGT
1 ATTATGTAAGTTATGTAAGTTATGT
**
44474998 AGAATGTAAGTTATGTAAGTTATGT
1 ATTATGTAAGTTATGTAAGTTATGT
*
44475023 AAGTTATATAAGTTATGTAAGTTATGT
1 -A-TTATGTAAGTTATGTAAGTTATGT
* *
44475050 AAGTTGTGT-A-TAATGTAAGTTATGT
1 -A-TTATGTAAGTTATGTAAGTTATGT
44475075 A
1 A
44475076 AGTTGTTGAA
Statistics
Matches: 155, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
24 2 0.01
25 116 0.75
26 4 0.03
27 33 0.21
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (25 bp):
ATTATGTAAGTTATGTAAGTTATGT
Found at i:44475299 original size:16 final size:16
Alignment explanation
Indices: 44475278--44475310 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
44475268 TGATATTTAA
44475278 ATTATGTAACTTATGT
1 ATTATGTAACTTATGT
*
44475294 ATTATGTAAGTTATGT
1 ATTATGTAACTTATGT
44475310 A
1 A
44475311 AGTTGTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.15, T:0.48
Consensus pattern (16 bp):
ATTATGTAACTTATGT
Found at i:44475344 original size:46 final size:46
Alignment explanation
Indices: 44475294--44476054 Score: 556
Period size: 46 Copynumber: 16.8 Consensus size: 46
44475284 TAACTTATGT
* * **
44475294 ATTATGTAAGTTATGTAAGT-TGTTTA-TTATGAAATTTGATCTTTAA
1 ATTATGTAAGTTATGT-ATTATG-TAAGTTATGAAATTTTCTCTTTAA
** *
44475340 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTAT
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
44475386 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
44475432 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
44475478 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
* *
44475524 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTATGTATTATGTA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCT-TTA---A
* * ** * ** * *
44475574 AGTTATGCAAATTATGTAAGTTATGTAAGAAATGTAAGTTATGATATTT-G
1 A-TTATGTAAGTTATGT-A-TTATGTAAGTTATG-AAATT-TTCTCTTTAA
*
44475624 ATCT-T-TAACTTATATACGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
1 AT-TATGTAA---GT------TATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
*
44475678 ATTATGTAA-TTGATGTATTATGTAAGTTATGTAAA---T-TATTTAA
1 ATTATGTAAGTT-ATGTATTATGTAAGTTATG-AAATTTTCTCTTTAA
* * * * * **
44475721 GTTATATAAATTATGTA--A-G-AA--CATGATATTTGATCTTTAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
* * *
44475761 CTTATATACGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
*
44475807 ATTATGTAA-TTGATGTATTATGTAAGTTATGTAAA---T-TATTTAA
1 ATTATGTAAGTT-ATGTATTATGTAAGTTATG-AAATTTTCTCTTTAA
* * * * * **
44475850 GTTATATAAATTATGTA--A-G-AA--CATGATATTTGATCTTTAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
* * *
44475890 CTTATATACGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
* *
44475936 ATTATGTAA-TTGATGTATTATGTAAGTTATGTAAA---T-TATGTAA
1 ATTATGTAAGTT-ATGTATTATGTAAGTTATG-AAATTTTCTCTTTAA
* * **
44475979 GTTATGTAAG--A---A--ATGTAAGTTATGATATTTGATCTTTAA
1 ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
* *
44476018 ATTATGTACGTTATATATTATGTAAGTTATGTAAATT
1 ATTATGTAAGTTATGTATTATGTAAGTTATG-AAATT
44476055 ACGTAAGTTA
Statistics
Matches: 582, Mismatches: 68, Indels: 129
0.75 0.09 0.17
Matches are distributed among these distances:
35 2 0.00
36 16 0.03
37 6 0.01
38 1 0.00
39 17 0.03
40 42 0.07
41 4 0.01
42 2 0.00
43 51 0.09
44 12 0.02
45 9 0.02
46 323 0.55
47 16 0.03
48 2 0.00
49 2 0.00
50 4 0.01
51 16 0.03
52 1 0.00
53 18 0.03
54 13 0.02
55 19 0.03
56 1 0.00
57 5 0.01
ACGTcount: A:0.35, C:0.04, G:0.14, T:0.48
Consensus pattern (46 bp):
ATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAA
Found at i:44475345 original size:92 final size:92
Alignment explanation
Indices: 44475240--44475598 Score: 371
Period size: 92 Copynumber: 3.9 Consensus size: 92
44475230 ATTATATAAA
*
44475240 ATCTTTAAATTATGTAAGTTATAAAATT-TG-ATA-TT-T-AAATTATGTAACTTATGTATTATG
1 ATCTTTAAATTATGTAAGTTAT-AAATTATGTA-AGTTATGAAATT-TG-AACTT-TATATTATG
* *
44475300 TAAGTTATGTAAGT-TGTTTA-TTATGAAATTTG
61 TAAGTTATGT-ATTATG-TAAGTTATGAAATTTG
** *
44475332 ATCTTTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTGATCTTTATATTATGTAAGT
1 ATCTTTAAATTATGTAAGTTATAAATTATGTAAGTTATGAAATTTGAACTTTATATTATGTAAGT
*
44475397 TATGTATTATGTAAGTTATGAAATTTT
66 TATGTATTATGTAAGTTATGAAATTTG
* ** *** *
44475424 CTCTTTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAAATTATGTAAGT
1 ATCTTTAAATTATGTAAGTTATAAATTATGTAAGTTATGAAATTTGAACTTTATATTATGTAAGT
*
44475489 TATGTATTATGTAAGTTATGAAATTTT
66 TATGTATTATGTAAGTTATGAAATTTG
* ** * *
44475516 CTCTTTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTT----TATGTATTATGTAAGT
1 ATCTTTAAATTATGTAAGTTATAAATTATGTAAGTTATGAAATTTGAACTTTATATTATGTAAGT
*
44475577 TATGCAAATTATGTAAGTTATG
66 TATG--TATTATGTAAGTTATG
44475599 TAAGAAATGT
Statistics
Matches: 243, Mismatches: 15, Indels: 20
0.87 0.05 0.07
Matches are distributed among these distances:
88 17 0.07
90 15 0.06
91 7 0.03
92 189 0.78
93 7 0.03
94 3 0.01
95 5 0.02
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.49
Consensus pattern (92 bp):
ATCTTTAAATTATGTAAGTTATAAATTATGTAAGTTATGAAATTTGAACTTTATATTATGTAAGT
TATGTATTATGTAAGTTATGAAATTTG
Found at i:44475346 original size:62 final size:62
Alignment explanation
Indices: 44475171--44475375 Score: 263
Period size: 62 Copynumber: 3.3 Consensus size: 62
44475161 TTATATATAT
*
44475171 TTATGT-A-TTATGTAAATTGTTTATTATAAAATTTGATCTTTAAATTATTTAAGTTATGTA
1 TTATGTAAGTTATGTAAATTGTTTATTATAAAATTTGATCTTTAAATTATGTAAGTTATGTA
* ** * * * * * *
44475231 TTATATAAAATCTTTAAATTATGTAAGTTATAAAATTTGATATTTAAATTATGTAACTTATGTA
1 TTATGTAAGTTATGTAAATTGT-TTA-TTATAAAATTTGATCTTTAAATTATGTAAGTTATGTA
* *
44475295 TTATGTAAGTTATGTAAGTTGTTTATTATGAAATTTGATCTTTAAATTATGTAAGTTATGTA
1 TTATGTAAGTTATGTAAATTGTTTATTATAAAATTTGATCTTTAAATTATGTAAGTTATGTA
44475357 TTATGTAAGTTATG-AAATT
1 TTATGTAAGTTATGTAAATT
44475376 TGATCTTTAT
Statistics
Matches: 120, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
60 5 0.04
61 5 0.04
62 57 0.47
63 4 0.03
64 49 0.41
ACGTcount: A:0.37, C:0.02, G:0.12, T:0.50
Consensus pattern (62 bp):
TTATGTAAGTTATGTAAATTGTTTATTATAAAATTTGATCTTTAAATTATGTAAGTTATGTA
Found at i:44475431 original size:154 final size:148
Alignment explanation
Indices: 44475248--44475719 Score: 551
Period size: 154 Copynumber: 3.2 Consensus size: 148
44475238 AAATCTTTAA
* *
44475248 ATTATGTAAGTTATAAAATTTGATATTTAAATTATGTAACTTATGTATTATGTAAGTTATGTAAG
1 ATTATGTAAGTTATGAAATTT-TTATTTAAATTATGTAA-TTATG-ATTATGTAAGTTATGTAAG
*
44475313 TTGTTTATTATGAAATTTGATCTTTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTG
63 -TG--TATTATGAAATTTGATCTTTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTT
* *
44475378 ATCTTTATATTATGTAAGTTATGT
125 CTCTTTAAATTATGTAAGTTATGT
*
44475402 ATTATGTAAGTTATGAAATTTTCTCTTTAAATTATGT-A--A-G-TTATGT-A-TTATGTAA--G
1 ATTATGTAAGTTATGAAATTTT-TATTTAAATTATGTAATTATGATTATGTAAGTTATGTAAGTG
**
44475458 --TTATGAAATTTTCTCTTTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTT
65 TATTATGAAATTTGATCTTTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTT
44475521 TAAATTATGTAAGTTATGT
130 TAAATTATGTAAGTTATGT
*
44475540 ATTATGTAAGTTATGAAA-TTTTATGT--ATTATGTAAGTTATGCAAATTATGTAAGTTATGTAA
1 ATTATGTAAGTTATGAAATTTTTATTTAAATTATGTAA-TTATG---ATTATGTAAGTTATGTAA
* * * *
44475602 GAAATGTAAGTTATGATATTTGATCTTTAACTTATATACGTTATGTATTATGTAAGTTATGAAAT
62 G---TGT-A-TTATGAAATTTGATCTTTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAAT
44475667 TTTCTCTTTAAATTATGTAA-TTGATGT
122 TTTCTCTTTAAATTATGTAAGTT-ATGT
44475694 ATTATGTAAGTTATGTAAATTATTTA
1 ATTATGTAAGTTATG-AAATT-TTTA
44475720 AGTTATATAA
Statistics
Matches: 277, Mismatches: 16, Indels: 47
0.81 0.05 0.14
Matches are distributed among these distances:
134 7 0.03
135 1 0.00
136 3 0.01
137 3 0.01
138 96 0.35
139 1 0.00
142 1 0.00
143 6 0.02
144 1 0.00
145 16 0.06
146 1 0.00
147 6 0.02
149 1 0.00
150 2 0.01
153 3 0.01
154 121 0.44
155 3 0.01
156 1 0.00
157 4 0.01
ACGTcount: A:0.34, C:0.03, G:0.14, T:0.49
Consensus pattern (148 bp):
ATTATGTAAGTTATGAAATTTTTATTTAAATTATGTAATTATGATTATGTAAGTTATGTAAGTGT
ATTATGAAATTTGATCTTTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTT
AAATTATGTAAGTTATGT
Found at i:44475483 original size:129 final size:125
Alignment explanation
Indices: 44475337--44476054 Score: 667
Period size: 129 Copynumber: 5.7 Consensus size: 125
44475327 ATTTGATCTT
*
44475337 TAAATTATGTAAGTTATGT-ATTATGTAAGTTATGAAATTTGATCTTTATATTATGTAAGTTATG
1 TAAATTATTTAAGTTATGTAATTATGTAAGTTATGAAATTTGATCTTTA-ATTATGTAAGTTATG
44475401 TATTATGTAAGTTATGAAATTTTCTCTTTAAATTATGTAAGTTATGTATTATGTAAGTTATG
65 TATTATGTAAGTTATGAAATTTTCTCTTTAAATTATGTAA-TTATGTATTATGTAAGTTATG
* * **
44475463 -AAATTTTCTCTTTAAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAAATT
1 TAAA---T-TATTTAAGTTA--T--G-TA---ATTATGTAAGTTATGAAATTTGATCTTT-AATT
* * *
44475527 ATGTAAGTTATGTATTATGTAAGTTATGAAA-TTT-TATGT--ATTATGTAAGTTATGCAAATTA
53 ATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAAATTATGTAA-TTATG--TATTA
44475588 TGTAAGTTATG
115 TGTAAGTTATG
* * ** * * *
44475599 TAAGA-AATGTAAGTTATG-ATATT-TG-ATCTT-T--AACTT-A--TATACGTTATGT-A-TTA
1 TAA-ATTATTTAAGTTATGTA-ATTATGTAAGTTATGAAATTTGATCTTTA-ATTATGTAAGTTA
44475652 TGTA--A-GT----TATGAAATTTTCTCTTTAAATTATGTAATTGATGTATTATGTAAGTTATG
63 TGTATTATGTAAGTTATGAAATTTTCTCTTTAAATTATGTAATT-ATGTATTATGTAAGTTATG
* ** * * *
44475709 TAAATTATTTAAGTTATATAAATTATGTAAGAACATGATATTTGATCTTTAACTTATATACGTTA
1 TAAATTATTTAAGTTATGT-AATTATGTAAG-TTATGAAATTTGATCTTTAA-TTATGTAAGTTA
44475774 TGTATTATGTAAGTTATGAAATTTTCTCTTTAAATTATGTAATTGATGTATTATGTAAGTTATG
63 TGTATTATGTAAGTTATGAAATTTTCTCTTTAAATTATGTAATT-ATGTATTATGTAAGTTATG
* ** * * *
44475838 TAAATTATTTAAGTTATATAAATTATGTAAGAACATGATATTTGATCTTTAACTTATATACGTTA
1 TAAATTATTTAAGTTATGT-AATTATGTAAG-TTATGAAATTTGATCTTTAA-TTATGTAAGTTA
44475903 TGTATTATGTAAGTTATGAAATTTTCTCTTTAAATTATGTAATTGATGTATTATGTAAGTTATG
63 TGTATTATGTAAGTTATGAAATTTTCTCTTTAAATTATGTAATT-ATGTATTATGTAAGTTATG
* ** * *
44475967 TAAATTATGTAAGTTATGTAAGAAATGTAAGTTATGATATTTGATCTTTAAATTATGTACGTTAT
1 TAAATTATTTAAGTTATGTAA-TTATGTAAGTTATGAAATTTGATCTTT-AATTATGTAAGTTAT
*
44476032 ATATTATGTAAGTTATGTAAATT
64 GTATTATGTAAGTTATG-AAATT
44476055 ACGTAAGTTA
Statistics
Matches: 501, Mismatches: 42, Indels: 95
0.79 0.07 0.15
Matches are distributed among these distances:
108 7 0.01
109 4 0.01
110 31 0.06
111 5 0.01
112 17 0.03
113 2 0.00
115 8 0.02
116 2 0.00
117 11 0.02
118 1 0.00
120 12 0.02
122 8 0.02
123 3 0.01
124 3 0.01
125 9 0.02
127 1 0.00
128 47 0.09
129 219 0.44
131 2 0.00
133 8 0.02
134 16 0.03
136 18 0.04
137 5 0.01
138 61 0.12
139 1 0.00
ACGTcount: A:0.35, C:0.04, G:0.14, T:0.48
Consensus pattern (125 bp):
TAAATTATTTAAGTTATGTAATTATGTAAGTTATGAAATTTGATCTTTAATTATGTAAGTTATGT
ATTATGTAAGTTATGAAATTTTCTCTTTAAATTATGTAATTATGTATTATGTAAGTTATG
Found at i:44475544 original size:108 final size:106
Alignment explanation
Indices: 44475432--44475663 Score: 256
Period size: 108 Copynumber: 2.2 Consensus size: 106
44475422 TTCTCTTTAA
* *
44475432 ATTATGTAAGTTATG-TATTATGTAAGTTATG-AAATTTTCTCTTTAAATTATGTAAGTTATGT-
1 ATTATGTAAGTTATGATATTATGT-A-TTATGTAAATTAT-GC---AAATTATGTAAGTTATGTA
** ** *
44475494 A-TTATGTAAGTTATGAAATTTTCTCTTTAAATTATGTAAGTTATGT
60 AGAAATGTAAGTTATGAAATTTGATCTTTAAATTATATAAGTTATGT
* *
44475540 ATTATGTAAGTTATGAAATTTTATGTATTATGTAAGTTATGCAAATTATGTAAGTTATGTAAGAA
1 ATTATGTAAGTTATG--ATATTATGTATTATGTAAATTATGCAAATTATGTAAGTTATGTAAGAA
* * *
44475605 ATGTAAGTTATGATATTTGATCTTTAACTTATATACGTTATGT
64 ATGTAAGTTATGAAATTTGATCTTTAAATTATATAAGTTATGT
44475648 ATTATGTAAGTTATGA
1 ATTATGTAAGTTATGA
44475664 AATTTTCTCT
Statistics
Matches: 106, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
106 19 0.18
107 1 0.01
108 67 0.63
109 6 0.06
110 6 0.06
111 7 0.07
ACGTcount: A:0.34, C:0.03, G:0.15, T:0.47
Consensus pattern (106 bp):
ATTATGTAAGTTATGATATTATGTATTATGTAAATTATGCAAATTATGTAAGTTATGTAAGAAAT
GTAAGTTATGAAATTTGATCTTTAAATTATATAAGTTATGT
Found at i:44475602 original size:9 final size:9
Alignment explanation
Indices: 44475279--44476066 Score: 140
Period size: 9 Copynumber: 86.6 Consensus size: 9
44475269 GATATTTAAA
*
44475279 TTATGTAAC
1 TTATGTAAG
44475288 TTATGT-A-
1 TTATGTAAG
44475295 TTATGTAAG
1 TTATGTAAG
44475304 TTATGTAAG
1 TTATGTAAG
* *
44475313 TTGT-TTA-
1 TTATGTAAG
* *
44475320 TTATGAAAT
1 TTATGTAAG
* *
44475329 TTGATCTTTAAA
1 TT-A--TGTAAG
44475341 TTATGTAAG
1 TTATGTAAG
44475350 TTATGT-A-
1 TTATGTAAG
44475357 TTATGTAAG
1 TTATGTAAG
* *
44475366 TTATGAAAT
1 TTATGTAAG
*
44475375 TTGATCTTTATA-
1 TT-A--TGTA-AG
44475387 TTATGTAAG
1 TTATGTAAG
44475396 TTATGT-A-
1 TTATGTAAG
44475403 TTATGTAAG
1 TTATGTAAG
* *
44475412 TTATGAAATTT
1 TTATGTAA--G
* * *
44475423 TCTCTTTAAA
1 T-TATGTAAG
44475433 TTATGTAAG
1 TTATGTAAG
44475442 TTATGT-A-
1 TTATGTAAG
44475449 TTATGTAAG
1 TTATGTAAG
* *
44475458 TTATGAAATTT
1 TTATGTAA--G
* * *
44475469 TCTCTTTAAA
1 T-TATGTAAG
44475479 TTATGTAAG
1 TTATGTAAG
44475488 TTATGT-A-
1 TTATGTAAG
44475495 TTATGTAAG
1 TTATGTAAG
* *
44475504 TTATGAAATTT
1 TTATGTAA--G
* * *
44475515 TCTCTTTAAA
1 T-TATGTAAG
44475525 TTATGTAAG
1 TTATGTAAG
44475534 TTATGT-A-
1 TTATGTAAG
44475541 TTATGTAAG
1 TTATGTAAG
* *
44475550 TTATGAAATT
1 TTATGTAA-G
44475560 TTATGT-A-
1 TTATGTAAG
44475567 TTATGTAAG
1 TTATGTAAG
* *
44475576 TTATGCAAA
1 TTATGTAAG
44475585 TTATGTAAG
1 TTATGTAAG
44475594 TTATGTAAG
1 TTATGTAAG
**
44475603 AAATGTAAG
1 TTATGTAAG
*
44475612 TTATG-ATAT
1 TTATGTA-AG
* *
44475621 TTGATCTTTAAC
1 TT-A--TGTAAG
* *
44475633 TTATATACG
1 TTATGTAAG
44475642 TTATGT-A-
1 TTATGTAAG
44475649 TTATGTAAG
1 TTATGTAAG
* *
44475658 TTATGAAATTT
1 TTATGTAA--G
* * *
44475669 TCTCTTTAAA
1 T-TATGTAAG
44475679 TTATGTAA-
1 TTATGTAAG
44475687 TTGATGT-A-
1 TT-ATGTAAG
44475695 TTATGTAAG
1 TTATGTAAG
*
44475704 TTATGTAAA
1 TTATGTAAG
*
44475713 TTATTTAAG
1 TTATGTAAG
* *
44475722 TTATATAAA
1 TTATGTAAG
44475731 TTATGTAAG
1 TTATGTAAG
** *
44475740 AACATG-ATAT
1 -TTATGTA-AG
* *
44475750 TTGATCTTTAAC
1 TT-A--TGTAAG
* *
44475762 TTATATACG
1 TTATGTAAG
44475771 TTATGT-A-
1 TTATGTAAG
44475778 TTATGTAAG
1 TTATGTAAG
* *
44475787 TTATGAAATTT
1 TTATGTAA--G
* * *
44475798 TCTCTTTAAA
1 T-TATGTAAG
44475808 TTATGTAA-
1 TTATGTAAG
44475816 TTGATGT-A-
1 TT-ATGTAAG
44475824 TTATGTAAG
1 TTATGTAAG
*
44475833 TTATGTAAA
1 TTATGTAAG
*
44475842 TTATTTAAG
1 TTATGTAAG
* *
44475851 TTATATAAA
1 TTATGTAAG
44475860 TTATGTAAG
1 TTATGTAAG
** *
44475869 AACATG-ATAT
1 -TTATGTA-AG
* *
44475879 TTGATCTTTAAC
1 TT-A--TGTAAG
* *
44475891 TTATATACG
1 TTATGTAAG
44475900 TTATGT-A-
1 TTATGTAAG
44475907 TTATGTAAG
1 TTATGTAAG
* *
44475916 TTATGAAATTT
1 TTATGTAA--G
* * *
44475927 TCTCTTTAAA
1 T-TATGTAAG
44475937 TTATGTAA-
1 TTATGTAAG
44475945 TTGATGT-A-
1 TT-ATGTAAG
44475953 TTATGTAAG
1 TTATGTAAG
*
44475962 TTATGTAAA
1 TTATGTAAG
44475971 TTATGTAAG
1 TTATGTAAG
44475980 TTATGTAAG
1 TTATGTAAG
**
44475989 AAATGTAAG
1 TTATGTAAG
*
44475998 TTATG-ATAT
1 TTATGTA-AG
* *
44476007 TTGATCTTTAAA
1 TT-A--TGTAAG
*
44476019 TTATGTACG
1 TTATGTAAG
*
44476028 TTATAT-A-
1 TTATGTAAG
44476035 TTATGTAAG
1 TTATGTAAG
*
44476044 TTATGTAAA
1 TTATGTAAG
*
44476053 TTACGTAAG
1 TTATGTAAG
44476062 TTATG
1 TTATG
44476067 AAATTTATTG
Statistics
Matches: 555, Mismatches: 142, Indels: 164
0.64 0.16 0.19
Matches are distributed among these distances:
7 80 0.14
8 41 0.07
9 343 0.62
10 25 0.05
11 12 0.02
12 49 0.09
13 5 0.01
ACGTcount: A:0.34, C:0.04, G:0.14, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:44475664 original size:108 final size:106
Alignment explanation
Indices: 44475476--44475669 Score: 298
Period size: 108 Copynumber: 1.8 Consensus size: 106
44475466 TTTTCTCTTT
** ** *
44475476 AAATTATGTAAGTTATGTATTATGTAAGTTATGAAATTTTCTCTTTAAATTATGTAAGTTATGTA
1 AAATTATGTAAGTTATGTAAAATGTAAGTTATGAAATTTGATCTTTAAATTATATAAGTTATGTA
44475541 TTATGTAAGTTATGAAATTTTATGTATTATGTAAGTTATGC
66 TTATGTAAGTTATGAAATTTTATGTATTATGTAAGTTATGC
* * *
44475582 AAATTATGTAAGTTATGTAAGAAATGTAAGTTATGATATTTGATCTTTAACTTATATACGTTATG
1 AAATTATGTAAGTTATGT-A-AAATGTAAGTTATGAAATTTGATCTTTAAATTATATAAGTTATG
44475647 TATTATGTAAGTTATGAAATTTT
64 TATTATGTAAGTTATGAAATTTT
44475670 CTCTTTAAAT
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
106 18 0.23
107 1 0.01
108 59 0.76
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (106 bp):
AAATTATGTAAGTTATGTAAAATGTAAGTTATGAAATTTGATCTTTAAATTATATAAGTTATGTA
TTATGTAAGTTATGAAATTTTATGTATTATGTAAGTTATGC
Found at i:44476066 original size:82 final size:82
Alignment explanation
Indices: 44475909--44476066 Score: 246
Period size: 82 Copynumber: 1.9 Consensus size: 82
44475899 GTTATGTATT
** *
44475909 ATGTAAGTTATGAAATTTTCTCTTTAAATTATGTAATTGATGTATTATGTAAGTTATGTAAATTA
1 ATGTAAGTTATGAAATTTGATCTTTAAATTATGTAATTGATATATTATGTAAGTTATGTAAATTA
*
44475974 TGTAAGTTATGTAAGAA
66 CGTAAGTTATGTAAGAA
* *
44475991 ATGTAAGTTATGATATTTGATCTTTAAATTATGTACGTT-ATATATTATGTAAGTTATGTAAATT
1 ATGTAAGTTATGAAATTTGATCTTTAAATTATGTA-ATTGATATATTATGTAAGTTATGTAAATT
44476055 ACGTAAGTTATG
65 ACGTAAGTTATG
44476067 AAATTTATTG
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
82 67 0.97
83 2 0.03
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.46
Consensus pattern (82 bp):
ATGTAAGTTATGAAATTTGATCTTTAAATTATGTAATTGATATATTATGTAAGTTATGTAAATTA
CGTAAGTTATGTAAGAA
Found at i:44477239 original size:14 final size:13
Alignment explanation
Indices: 44477220--44477255 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 13
44477210 AACAGAAACC
44477220 CGAATAACAAAATT
1 CGAATAACAAAA-T
44477234 CGAATAACAAAAT
1 CGAATAACAAAAT
44477247 CTGAATAAC
1 C-GAATAAC
44477256 TCAACACTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 2 0.10
14 19 0.90
ACGTcount: A:0.56, C:0.17, G:0.08, T:0.19
Consensus pattern (13 bp):
CGAATAACAAAAT
Found at i:44477577 original size:41 final size:41
Alignment explanation
Indices: 44477532--44477717 Score: 205
Period size: 41 Copynumber: 4.5 Consensus size: 41
44477522 GAGTGTAAAT
* *
44477532 AGGGGCACATAGGTAC-TATTCAGGGGTACTGAAGTACAAAC
1 AGGGGCACATATGTGCAT-TTCAGGGGTACTGAAGTACAAAC
* * * *
44477573 AGGGGCACGTATGTTCAATTT-AGGGGTACCGAAGTACGAAC
1 AGGGGCACATATGTGC-ATTTCAGGGGTACTGAAGTACAAAC
* * * *
44477614 AGGGGAACACATGTGCATTTCAGGTGTACTGAAGTACGAAC
1 AGGGGCACATATGTGCATTTCAGGGGTACTGAAGTACAAAC
* * *
44477655 AGGGGCACGTATGTGCATTTTAAGGGTACTGAAGTACAAAC
1 AGGGGCACATATGTGCATTTCAGGGGTACTGAAGTACAAAC
* *
44477696 AGGGACACGTATGTGCATTTCA
1 AGGGGCACATATGTGCATTTCA
44477718 AAGAATAATT
Statistics
Matches: 122, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
40 4 0.03
41 115 0.94
42 2 0.02
43 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.23
Consensus pattern (41 bp):
AGGGGCACATATGTGCATTTCAGGGGTACTGAAGTACAAAC
Found at i:44477682 original size:82 final size:81
Alignment explanation
Indices: 44477550--44477717 Score: 239
Period size: 82 Copynumber: 2.0 Consensus size: 81
44477540 ATAGGTACTA
* * *
44477550 TTCAGGGGTACTGAAGTACAAACAGGGGCACGTATGTTCAATTTAGGGGTACCGAAGTACGAACA
1 TTCAGGGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATTTAAGGGTACCGAAGTACAAACA
44477615 GGGGAACAC-ATGTGCAT
66 -GGG-ACACGATGTGCAT
* * * *
44477632 TTCAGGTGTACTGAAGTACGAACAGGGGCACGTATGTGCATTTTAAGGGTACTGAAGTACAAACA
1 TTCAGGGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATTTAAGGGTACCGAAGTACAAACA
44477697 GGGACACGTATGTGCAT
66 GGGACACG-ATGTGCAT
44477714 TTCA
1 TTCA
44477718 AAGAATAATT
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
80 4 0.05
81 3 0.04
82 70 0.91
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (81 bp):
TTCAGGGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATTTAAGGGTACCGAAGTACAAACA
GGGACACGATGTGCAT
Found at i:44488651 original size:30 final size:30
Alignment explanation
Indices: 44488615--44488671 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
44488605 AACAGAAAGG
*
44488615 TAATTTAGAACGATGAGACGACGAATTGGA
1 TAATTTAGAACGACGAGACGACGAATTGGA
44488645 TAATTTAGAACGACGAGACGACGAATT
1 TAATTTAGAACGACGAGACGACGAATT
44488672 AAATCAGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.12, G:0.25, T:0.23
Consensus pattern (30 bp):
TAATTTAGAACGACGAGACGACGAATTGGA
Found at i:44488788 original size:22 final size:22
Alignment explanation
Indices: 44488746--44488797 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
44488736 TTCAAAGGAA
44488746 GGAAGAGAGACGTTTCAAAAAG
1 GGAAGAGAGACGTTTCAAAAAG
* *
44488768 GGAACGAGAGGCGTTTGAAAAGAG
1 GGAA-GAGAGACGTTTCAAAA-AG
*
44488792 AGAAGA
1 GGAAGA
44488798 AACGGAGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 4 0.16
23 16 0.64
24 5 0.20
ACGTcount: A:0.44, C:0.08, G:0.37, T:0.12
Consensus pattern (22 bp):
GGAAGAGAGACGTTTCAAAAAG
Found at i:44501240 original size:27 final size:28
Alignment explanation
Indices: 44501210--44501305 Score: 122
Period size: 28 Copynumber: 3.4 Consensus size: 28
44501200 ATTAAGTCCA
44501210 CACACTTAGTGCTATATAATC-AACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
*
44501237 CACACTTGGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
* * * *
44501265 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCTATATAA-TCAAACTCG
*
44501294 CACATTTAGTGC
1 CACACTTAGTGC
44501306 CAATCTCATG
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 20 0.33
28 22 0.37
29 18 0.30
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCG
Found at i:44501271 original size:28 final size:27
Alignment explanation
Indices: 44501210--44501277 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
44501200 ATTAAGTCCA
44501210 CACACTTAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTATATAATCAACTCG
*
44501237 CACACTTGGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATC-AACTCG
44501265 CACACTTAGTGCT
1 CACACTTAGTGCT
44501278 GTACAATTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 20 0.53
28 18 0.47
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (27 bp):
CACACTTAGTGCTATATAATCAACTCG
Found at i:44503244 original size:26 final size:27
Alignment explanation
Indices: 44503194--44503242 Score: 77
Period size: 24 Copynumber: 1.9 Consensus size: 27
44503184 TGAATATTAT
44503194 TTAATTTTTTCATTTATATAATTTTAA
1 TTAATTTTTTCATTTATATAATTTTAA
44503221 TTAA-TTTTT-ATTT-TATAATTTT
1 TTAATTTTTTCATTTATATAATTTT
44503243 TTTATAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.41
25 4 0.18
26 5 0.23
27 4 0.18
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (27 bp):
TTAATTTTTTCATTTATATAATTTTAA
Found at i:44514081 original size:21 final size:21
Alignment explanation
Indices: 44514057--44514096 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
44514047 TGCGTCTGAT
*
44514057 TTTGGTGTGGGTGCATCTGGC
1 TTTGGTGTGGATGCATCTGGC
* *
44514078 TTTGTTGTGGATGTATCTG
1 TTTGGTGTGGATGCATCTG
44514097 AGTGTGCTGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.07, C:0.10, G:0.38, T:0.45
Consensus pattern (21 bp):
TTTGGTGTGGATGCATCTGGC
Found at i:44518733 original size:40 final size:40
Alignment explanation
Indices: 44518530--44518733 Score: 202
Period size: 40 Copynumber: 5.1 Consensus size: 40
44518520 CGGAATTTAA
** *
44518530 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
44518570 CCGGTTATGGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
44518610 CCGGGTTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
44518649 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GAATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
44518689 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
44518729 CCGGA
1 CCGGA
44518734 CATCATTCAA
Statistics
Matches: 134, Mismatches: 23, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
38 1 0.01
39 32 0.24
40 90 0.67
41 11 0.08
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:44522379 original size:50 final size:50
Alignment explanation
Indices: 44522302--44522404 Score: 197
Period size: 50 Copynumber: 2.1 Consensus size: 50
44522292 ATAGGCCACA
44522302 ACTCGACCTTCTTGCATCAATACGCAACCCAACCCAAGTAGGGATGCGTC
1 ACTCGACCTTCTTGCATCAATACGCAACCCAACCCAAGTAGGGATGCGTC
*
44522352 ACTCGACCTTCTTGCATCAATATGCAACCCAACCCAAGTAGGGATGCGTC
1 ACTCGACCTTCTTGCATCAATACGCAACCCAACCCAAGTAGGGATGCGTC
44522402 ACT
1 ACT
44522405 ATAAATGACA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.28, C:0.33, G:0.17, T:0.21
Consensus pattern (50 bp):
ACTCGACCTTCTTGCATCAATACGCAACCCAACCCAAGTAGGGATGCGTC
Found at i:44522891 original size:260 final size:265
Alignment explanation
Indices: 44522374--44522903 Score: 917
Period size: 260 Copynumber: 2.0 Consensus size: 265
44522364 TGCATCAATA
44522374 TGCAACCCAACCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTGCCTGATTCGGGTTGC
1 TGCAACCCAACCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTGCCTGATTCGGGTTGC
*
44522439 ACTAAAATTGGAGCTTCAGTCAAATAAGTTTTTAGTTGATCAAAACTTTTCTAACATTTCTCCGT
66 ACTAAAATTGGAGCTTCAGTCAAATAAGTTTTCAGTTGATCAAAACTTTTCTAACA-TTCT-C-T
44522504 CCATTCGAACTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGAAACCTT
128 CCA-TCGAACTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGAAACCTT
* *
44522569 TGACAAATCATCGGTAATAACCGGTGAGTCCCAGGAAGCTCCGAACTTCGGTAATATTTCTTGGA
192 TGACAAATCATCGGTAATAACCGGCGAGCCCCAGGAAGCTCCGAACTTCGGTAATATTTCTTGGA
44522634 GGCTTCCAG
257 GGCTTCCAG
44522643 TGCAACCCAACCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTGCCTGATTCGGGTTGC
1 TGCAACCCAACCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTGCCTGATTCGGGTTGC
* * *
44522708 ACTAAAATTGGAGCTTCAGTCAAATGAGTTTTCAGTTGATCGAAACTTTTCTGACA-T-T-T-C-
66 ACTAAAATTGGAGCTTCAGTCAAATAAGTTTTCAGTTGATCAAAACTTTTCTAACATTCTCTCCA
44522768 TCGAACTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGAAACCTTTGAC
131 TCGAACTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGAAACCTTTGAC
* *
44522833 AAATCGTCGGTAATAACCGGCGAGCCCCAGGAAGCTCTGAACTTCGGTAATATTTCTTGGAGGCT
196 AAATCATCGGTAATAACCGGCGAGCCCCAGGAAGCTCCGAACTTCGGTAATATTTCTTGGAGGCT
44522898 TCCAG
261 TCCAG
44522903 T
1 T
44522904 TAAGTATGGC
Statistics
Matches: 253, Mismatches: 8, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
260 132 0.52
262 1 0.00
263 1 0.00
266 1 0.00
267 1 0.00
269 117 0.46
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (265 bp):
TGCAACCCAACCCAAGTAGGGATGCGTCACTATAAATGACAAACTCTTTGCCTGATTCGGGTTGC
ACTAAAATTGGAGCTTCAGTCAAATAAGTTTTCAGTTGATCAAAACTTTTCTAACATTCTCTCCA
TCGAACTTAACATCCTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGAAACCTTTGAC
AAATCATCGGTAATAACCGGCGAGCCCCAGGAAGCTCCGAACTTCGGTAATATTTCTTGGAGGCT
TCCAG
Found at i:44527000 original size:39 final size:40
Alignment explanation
Indices: 44526929--44527070 Score: 152
Period size: 39 Copynumber: 3.6 Consensus size: 40
44526919 GCTACTCGTT
* *
44526929 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
*
44526969 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
44527008 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
44527049 C-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
44527071 AACATCATTC
Statistics
Matches: 88, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
38 2 0.02
39 45 0.51
40 33 0.38
41 8 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:44529837 original size:123 final size:124
Alignment explanation
Indices: 44529589--44529981 Score: 362
Period size: 123 Copynumber: 3.2 Consensus size: 124
44529579 AAGGCCAAGT
* * * * * * * * *
44529589 AGAAACTACTGTAGAAAAGGAGCGTCCACGTGGGAGATTTTCTCAGTAATTTTGCTGACAGTGCA
1 AGAAACTACTATAGAAAAAGAGCAT-CATGTGCGAGCTTTTTTCAGTACTTTTGCTGACAATGCA
* * * * * * * *
44529654 TCCTCCTTGAAGCGTTTTTGACACTATTTTTTTAGAATCGTCTTCTCAAAATTATTTTTTC
65 TCCTACTTGAAACG-TTTTGACACTACTTTTTCAAAATCATCTTCTCAAAAGTATCTTTTC
* *
44529715 AGGAACTACTATAGAAAAAGAG-AGTCTATGTTCGAGCTTTTTT-AGTACTTTTGCTGACAATGC
1 AGAAACTACTATAGAAAAAGAGCA-TC-ATGTGCGAGCTTTTTTCAGTACTTTTGCTGACAATGC
* *
44529778 ATGCTACTTGAAACG-TTTGACATTACTTTTTCAAAATCATCTTCTCAAAAGTATCTTTTC
64 ATCCTACTTGAAACGTTTTGACACTACTTTTTCAAAATCATCTTCTCAAAAGTATCTTTTC
* * * * *
44529838 AGAAACTACTGTAGAAAAAGAGCATCATGTGGGAGCTTTTTTCAATACTTTTGCTGATAGTGCAT
1 AGAAACTACTATAGAAAAAGAGCATCATGTGCGAGCTTTTTTCAGTACTTTTGCTGACAATGCAT
* ** * * * * * * *
44529903 CCTTCTTGATGCGTTTTTGTCACTATTTTTTTAGAACCGTCTTCTCAAAATTAAT-TTTTC
66 CCTACTTGAAACG-TTTTGACACTACTTTTTCAAAATCATCTTCTCAAAAGT-ATCTTTTC
* *
44529963 AAAAACTACTGTAGAAAAA
1 AGAAACTACTATAGAAAAA
44529982 AAAACAAAAT
Statistics
Matches: 219, Mismatches: 41, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
122 14 0.06
123 88 0.40
124 1 0.00
125 83 0.38
126 33 0.15
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (124 bp):
AGAAACTACTATAGAAAAAGAGCATCATGTGCGAGCTTTTTTCAGTACTTTTGCTGACAATGCAT
CCTACTTGAAACGTTTTGACACTACTTTTTCAAAATCATCTTCTCAAAAGTATCTTTTC
Found at i:44530123 original size:34 final size:33
Alignment explanation
Indices: 44530077--44530168 Score: 112
Period size: 34 Copynumber: 2.7 Consensus size: 33
44530067 TTTTTAAATC
*
44530077 CTAAACCCTAATTTAATTAATTTTCTTAAAAATA
1 CTAAA-CCTAATTTAATTAATTTTCTTAAAAACA
* * * *
44530111 GTAAACCTTAATTTAATTAATTTACTTAAAACCC
1 CTAAACC-TAATTTAATTAATTTTCTTAAAAACA
44530145 CTAAAACCTAATTTAATTAATTTT
1 CT-AAACCTAATTTAATTAATTTT
44530169 TAAAAAAATT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
33 2 0.04
34 42 0.86
35 5 0.10
ACGTcount: A:0.42, C:0.15, G:0.01, T:0.41
Consensus pattern (33 bp):
CTAAACCTAATTTAATTAATTTTCTTAAAAACA
Found at i:44530189 original size:34 final size:33
Alignment explanation
Indices: 44530078--44530189 Score: 104
Period size: 34 Copynumber: 3.3 Consensus size: 33
44530068 TTTTAAATCC
*
44530078 TAAACCCTAATTTAATTAATTTTCT-TAAAAATA
1 TAAACCCTAATTTAATTAATTTT-TAAAAAAATA
* ***
44530111 GTAAACCTTAATTTAATTAATTTACTTAAAACCCCTA
1 -TAAACCCTAATTTAATTAATTT--TTAAAA-AAATA
44530148 -AAA-CCTAATTTAATTAATTTTTAAAAAAATTA
1 TAAACCCTAATTTAATTAATTTTTAAAAAAA-TA
44530180 TAAACCCTAA
1 TAAACCCTAA
44530190 ACAAATAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
32 8 0.13
33 3 0.05
34 42 0.68
35 4 0.06
36 3 0.05
37 2 0.03
ACGTcount: A:0.46, C:0.14, G:0.01, T:0.38
Consensus pattern (33 bp):
TAAACCCTAATTTAATTAATTTTTAAAAAAATA
Done.