Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 148 of 153
Found at i:46270231 original size:46 final size:46
Alignment explanation
Indices: 46270179--46270497 Score: 428
Period size: 46 Copynumber: 7.0 Consensus size: 46
46270169 AGTGTGCTCT
46270179 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
46270225 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
46270271 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGC-AC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
46270316 TTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *** *
46270362 ATGACGGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
46270408 GTGACATGAAATG-GATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTG-TAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
46270454 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
46270498 TCATGTCAAA
Statistics
Matches: 248, Mismatches: 21, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
45 45 0.18
46 202 0.81
47 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:46270427 original size:137 final size:138
Alignment explanation
Indices: 46270180--46270520 Score: 440
Period size: 137 Copynumber: 2.5 Consensus size: 138
46270170 GTGTGCTCTC
* * * ***
46270180 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAGA
*
46270245 CCATGGTTGAAAGATACCATGGCAACCTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCA
66 CCATGGTTGAAAGATACCATGGCAACCTGACATGAAACGTGTAAGACCATGGTTGAAAGATACCA
*
46270310 TGGC-ACT
131 TGGCAACA
* *
46270317 TGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAATAAATAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAGA
* * *
46270382 CCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATG-GATAAGACCATGGTTGAAAGATACC
66 CCATGGTTGAAAGATACCATGGCAACCTGACATGAAACGTG-TAAGACCATGGTTGAAAGATACC
46270446 ATGGCAACA
130 ATGGCAACA
* * * * * * *
46270455 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATGTCA--AAGATAAATAA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAA-ATAAATAA
46270517 GACC
64 GACC
46270521 GTGGATGGGA
Statistics
Matches: 178, Mismatches: 22, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
136 3 0.02
137 133 0.75
138 42 0.24
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (138 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATAAATAAGA
CCATGGTTGAAAGATACCATGGCAACCTGACATGAAACGTGTAAGACCATGGTTGAAAGATACCA
TGGCAACA
Found at i:46270749 original size:17 final size:17
Alignment explanation
Indices: 46270707--46270750 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
46270697 AATATATGGA
46270707 AATGATATAGCATGAAAT
1 AATGATATA-CATGAAAT
*
46270725 ATTGATATA-ATGAAAT
1 AATGATATACATGAAAT
46270741 GAATGATATA
1 -AATGATATA
46270751 TGCTTATGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 7 0.30
17 8 0.35
18 8 0.35
ACGTcount: A:0.50, C:0.02, G:0.16, T:0.32
Consensus pattern (17 bp):
AATGATATACATGAAAT
Found at i:46271728 original size:96 final size:96
Alignment explanation
Indices: 46271578--46271846 Score: 285
Period size: 96 Copynumber: 2.8 Consensus size: 96
46271568 GTGTGCCAGT
* * * ***
46271578 GTAAGACCAAGTCTGGGACATGGCATCTA-CGATGTTGTGAGAGCCAATGTAAGACCATGTCTGG
1 GTAAGACCATGTCTGGGACATGGCATC-AGCCACGACATGAGAGCCAATGTAAGACCATGTCTGG
* * * *** *
46271642 GACGTGGCATC-GATATTGATATGTGCA-CTAGT
65 GACATGGCATCAG-TAATGAGACAAG-AGCTAGC
* * *
46271674 GTAAGACCATGTTTGGGACATGGCATCGGCCAC-ATCATGAGAGCCAGTGTAAGACCATGTCTGG
1 GTAAGACCATGTCTGGGACATGGCATCAGCCACGA-CATGAGAGCCAATGTAAGACCATGTCTGG
46271738 GACATGGCATCAGTAATGAGACAAGAGCTAGC
65 GACATGGCATCAGTAATGAGACAAGAGCTAGC
* * * * *
46271770 GTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATGTGAGCCAATATAAGACCATGTTTGGA
1 GTAAGACCATGTCTGGGACATGGCATCAGCCACGACATGAGAGCCAATGTAAGACCATGTCTGGG
46271835 ACATGGCATCAG
66 ACATGGCATCAG
46271847 CAATTCACCC
Statistics
Matches: 144, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
95 1 0.01
96 141 0.98
97 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (96 bp):
GTAAGACCATGTCTGGGACATGGCATCAGCCACGACATGAGAGCCAATGTAAGACCATGTCTGGG
ACATGGCATCAGTAATGAGACAAGAGCTAGC
Found at i:46271823 original size:48 final size:48
Alignment explanation
Indices: 46271572--46271848 Score: 219
Period size: 48 Copynumber: 5.8 Consensus size: 48
46271562 TTATATGTGT
* ***
46271572 GCCAGTGTAAGACCAAGTCTGGGACATGGCATCTA-CGAT-GTTGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-AGC-ATCGACATGAGA
* * * * * *
46271620 GCCAATGTAAGACCATGTCTGGGACGTGGCATC-GATATTGATATGTGCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATCGACATGAG-A
* * *
46271669 -CTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-C-ATCATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATCGA-CATGAGA
* *
46271716 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTAATGAGACA--AGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CAT-CGACATGAGA
* * * *
46271764 GCTAGCGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATGTGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGACATGAGA
* * * *
46271812 GCCAATATAAGACCATGTTTGGAACATGGCATCAGCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCA
46271849 ATTCACCCTA
Statistics
Matches: 182, Mismatches: 35, Indels: 24
0.76 0.15 0.10
Matches are distributed among these distances:
46 4 0.02
47 5 0.03
48 167 0.92
49 3 0.02
50 2 0.01
51 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATCGACATGAGA
Found at i:46274058 original size:17 final size:17
Alignment explanation
Indices: 46274036--46274076 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
46274026 ATGGGCTAAA
46274036 TGGGCCCGATGGGCAGT
1 TGGGCCCGATGGGCAGT
46274053 TGGGCCCGATGGGCAGT
1 TGGGCCCGATGGGCAGT
46274070 TGGGCCC
1 TGGGCCC
46274077 ATAATAGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.10, C:0.27, G:0.46, T:0.17
Consensus pattern (17 bp):
TGGGCCCGATGGGCAGT
Found at i:46274191 original size:29 final size:28
Alignment explanation
Indices: 46274150--46274220 Score: 88
Period size: 29 Copynumber: 2.5 Consensus size: 28
46274140 AATGTGACTG
* * *
46274150 GGCCTAACGGGCCATATCAATGTGATTT
1 GGCCTAATGGGCCATATCAATATGATTA
*
46274178 GTGCCTAATGGGCCATATGAATATGATTA
1 G-GCCTAATGGGCCATATCAATATGATTA
*
46274207 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
46274221 CATAAAGGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 13 0.35
29 24 0.65
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (28 bp):
GGCCTAATGGGCCATATCAATATGATTA
Found at i:46277663 original size:52 final size:52
Alignment explanation
Indices: 46277580--46277683 Score: 174
Period size: 52 Copynumber: 2.0 Consensus size: 52
46277570 TTCTTTTCTT
46277580 CCTGCCGATTTCTATTCTTCTCTACACAATTTTCTTTGTTTCACTAAGCCGA
1 CCTGCCGATTTCTATTCTTCTCTACACAATTTTCTTTGTTTCACTAAGCCGA
* *
46277632 CCTGCTGATTTCTATTCTTCTCTACGA-AATTTTCTTTGTTTCACTTAGCCGA
1 CCTGCCGATTTCTATTCTTCTCTAC-ACAATTTTCTTTGTTTCACTAAGCCGA
46277684 TTTCTTGTTC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
52 48 0.98
53 1 0.02
ACGTcount: A:0.18, C:0.27, G:0.11, T:0.44
Consensus pattern (52 bp):
CCTGCCGATTTCTATTCTTCTCTACACAATTTTCTTTGTTTCACTAAGCCGA
Found at i:46278093 original size:8 final size:8
Alignment explanation
Indices: 46278077--46278131 Score: 56
Period size: 8 Copynumber: 6.9 Consensus size: 8
46278067 ATTGACAAAA
46278077 GCCGAAAT
1 GCCGAAAT
*
46278085 GCCGCAAT
1 GCCGAAAT
*
46278093 GACGAAAT
1 GCCGAAAT
46278101 GCCGAAAT
1 GCCGAAAT
* *
46278109 GCTGAAAA
1 GCCGAAAT
*
46278117 GACGAAAT
1 GCCGAAAT
*
46278125 GTCGAAA
1 GCCGAAA
46278132 AGCCTAAAGT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
8 37 1.00
ACGTcount: A:0.42, C:0.20, G:0.25, T:0.13
Consensus pattern (8 bp):
GCCGAAAT
Found at i:46278104 original size:24 final size:24
Alignment explanation
Indices: 46278069--46278131 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
46278059 ACAAGTAGAT
* *
46278069 TGAC-AAAAGCCGAAATGCCGCAA
1 TGACGAAATGCCGAAATGCCGAAA
*
46278092 TGACGAAATGCCGAAATGCTGAAA
1 TGACGAAATGCCGAAATGCCGAAA
* *
46278116 AGACGAAATGTCGAAA
1 TGACGAAATGCCGAAA
46278132 AGCCTAAAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 4 0.12
24 30 0.88
ACGTcount: A:0.44, C:0.19, G:0.24, T:0.13
Consensus pattern (24 bp):
TGACGAAATGCCGAAATGCCGAAA
Found at i:46282213 original size:29 final size:29
Alignment explanation
Indices: 46282171--46282269 Score: 119
Period size: 29 Copynumber: 3.4 Consensus size: 29
46282161 TTGAAAAAGA
* *
46282171 GCCTAACGAGCCATATAAATGTGATTTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
* *
46282200 GCCTAATGGGCCATATACAGGTGATTTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
* * *
46282229 GCCTGATGGGCCATATGAATATGA-TTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
*
46282257 GCTTAATGGGCCA
1 GCCTAATGGGCCA
46282270 GATACAGGTA
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
28 15 0.25
29 44 0.75
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
GCCTAATGGGCCATATAAATGTGATTTGG
Found at i:46285968 original size:10 final size:9
Alignment explanation
Indices: 46285942--46286010 Score: 59
Period size: 9 Copynumber: 7.2 Consensus size: 9
46285932 CAAAAAAATT
*
46285942 ATATTTAAA
1 ATATTAAAA
46285951 AT-TTAAAA
1 ATATTAAAA
46285959 ATCATTAAAA
1 AT-ATTAAAA
*
46285969 TTATTAAAA
1 ATATTAAAA
46285978 ATATATAAAAAA
1 ATAT-T--AAAA
*
46285990 ATATTTTAAA
1 ATA-TTAAAA
46286000 ATATTAAAA
1 ATATTAAAA
46286009 AT
1 AT
46286011 TAATTAAATG
Statistics
Matches: 49, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
8 7 0.14
9 19 0.39
10 14 0.29
12 8 0.16
13 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (9 bp):
ATATTAAAA
Found at i:46285994 original size:21 final size:21
Alignment explanation
Indices: 46285951--46286009 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
46285941 TATATTTAAA
*
46285951 ATTTAAAAATCATT--AAAATT
1 ATTTAAAAAT-ATTAAAAAAAT
46285971 A-TTAAAAATATATAAAAAAAT
1 ATTTAAAAATAT-TAAAAAAAT
*
46285992 ATTTTAAAATATTAAAAA
1 ATTTAAAAATATTAAAAA
46286010 TTAATTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
18 2 0.06
19 9 0.27
20 1 0.03
21 12 0.36
22 9 0.27
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
ATTTAAAAATATTAAAAAAAT
Found at i:46304024 original size:20 final size:20
Alignment explanation
Indices: 46303996--46304038 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
46303986 TTTCGATAAA
46303996 CAATCTCAAACATAAC-TTTT
1 CAATCTCAAACA-AACATTTT
* *
46304016 CAATTTCAAATAAACATTTT
1 CAATCTCAAACAAACATTTT
46304036 CAA
1 CAA
46304039 CTTACCTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35
Consensus pattern (20 bp):
CAATCTCAAACAAACATTTT
Found at i:46304161 original size:21 final size:21
Alignment explanation
Indices: 46304135--46304178 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
46304125 GAACTACTCG
46304135 TTGTCGGCTCTCGCATTTTCT
1 TTGTCGGCTCTCGCATTTTCT
46304156 TTGTCGGCTCTCGCATTTTCT
1 TTGTCGGCTCTCGCATTTTCT
46304177 TT
1 TT
46304179 CCCTCTCGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.05, C:0.27, G:0.18, T:0.50
Consensus pattern (21 bp):
TTGTCGGCTCTCGCATTTTCT
Found at i:46306264 original size:42 final size:42
Alignment explanation
Indices: 46306214--46306326 Score: 147
Period size: 42 Copynumber: 2.7 Consensus size: 42
46306204 CTTCATTTTC
*** *
46306214 TCGATGCCATATTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAACCCAACTATGGTCTTACACATATTCACAT-A
* *
46306257 T-GATGCCATAGCCCAACTATGGTCTTACACATATTCATATA
1 TCGATGCCATAACCCAACTATGGTCTTACACATATTCACATA
*
46306298 TCGATGCCATAACCCAGCTATGGTCTTAC
1 TCGATGCCATAACCCAACTATGGTCTTAC
46306327 GCGAATCACA
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
41 2 0.03
42 59 0.95
43 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (42 bp):
TCGATGCCATAACCCAACTATGGTCTTACACATATTCACATA
Found at i:46306402 original size:47 final size:46
Alignment explanation
Indices: 46306300--46306402 Score: 116
Period size: 46 Copynumber: 2.2 Consensus size: 46
46306290 TTCATATATC
* * * * * *
46306300 GATGCCATAACCCAGCTATGGTCTTACGCGAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTACACGAAGCACATATCACACA
* * *
46306346 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACA
1 GATGCCATATCCCAGATATGGTCTTACAC-GAAGCACATATCACACA
46306393 GATGCCATAT
1 GATGCCATAT
46306403 GTAATACCCC
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
46 25 0.53
47 22 0.47
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (46 bp):
GATGCCATATCCCAGATATGGTCTTACACGAAGCACATATCACACA
Found at i:46307163 original size:20 final size:20
Alignment explanation
Indices: 46307126--46307163 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
46307116 TGATGGGGAG
*
46307126 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
46307146 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
46307164 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:46309064 original size:46 final size:46
Alignment explanation
Indices: 46309012--46309193 Score: 249
Period size: 46 Copynumber: 4.0 Consensus size: 46
46309002 AGTGTGCTCT
* *
46309012 CTGATATGAATTGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
46309058 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
46309104 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
46309150 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
46309194 TCATGTCAAA
Statistics
Matches: 123, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 122 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:46309679 original size:50 final size:50
Alignment explanation
Indices: 46309620--46309720 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
46309610 TATGTGCAAG
*
46309620 TATACTAACAATGTTGCTGTTTGGTGCTTATACAAGTGTCAAAGTGTTGA
1 TATACTAACAATGTTGCTGTTTGATGCTTATACAAGTGTCAAAGTGTTGA
46309670 TATACTAACAATGTTGCTGTTTGATGCTTATACAAGTGTCAAAGTGTTGA
1 TATACTAACAATGTTGCTGTTTGATGCTTATACAAGTGTCAAAGTGTTGA
46309720 T
1 T
46309721 TGAATGGTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.39
Consensus pattern (50 bp):
TATACTAACAATGTTGCTGTTTGATGCTTATACAAGTGTCAAAGTGTTGA
Found at i:46309935 original size:31 final size:31
Alignment explanation
Indices: 46309900--46309980 Score: 144
Period size: 31 Copynumber: 2.6 Consensus size: 31
46309890 ACTTGTAGTC
*
46309900 GAAGCTACCATTTTTCACTGATCAGGTAGCA
1 GAAGCTACCACTTTTCACTGATCAGGTAGCA
*
46309931 GAAGCTACCACTTTTCACTGATCAGGTAGCC
1 GAAGCTACCACTTTTCACTGATCAGGTAGCA
46309962 GAAGCTACCACTTTTCACT
1 GAAGCTACCACTTTTCACT
46309981 TGTCATTTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
GAAGCTACCACTTTTCACTGATCAGGTAGCA
Found at i:46310062 original size:50 final size:50
Alignment explanation
Indices: 46309956--46310132 Score: 248
Period size: 50 Copynumber: 3.5 Consensus size: 50
46309946 CACTGATCAG
* * * *
46309956 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCCTGATTAGATAGGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATTAGATAAGT
* * *
46310007 GTAGCCGAAGATATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATTAGATAAGT
46310057 GTAGCCGAAGCTA-CTACTTATCACTTTCATTTGTCCTTGATTAGATAAGT
1 GTAGCCGAAGCTATC-ACTTATCACTTTCATTTGTCCTTGATTAGATAAGT
* *
46310107 GTAGCCAAAGCTATCATTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
46310133 GTTGCCGTGG
Statistics
Matches: 112, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
49 1 0.01
50 87 0.78
51 24 0.21
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATTAGATAAGT
Found at i:46312870 original size:36 final size:36
Alignment explanation
Indices: 46312802--46312870 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 36
46312792 AAGTTCAAGC
* *
46312802 CATTCGTTGGCAATATAAAATATAAGAGATGCAACT
1 CATTCATTGGCAATATAAAATATAAGAAATGCAACT
* * * *
46312838 CATTCATTGGTAATATGAAATGTATGAAATGCA
1 CATTCATTGGCAATATAAAATATAAGAAATGCA
46312871 TACTATCCGT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 27 1.00
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (36 bp):
CATTCATTGGCAATATAAAATATAAGAAATGCAACT
Found at i:46313254 original size:49 final size:48
Alignment explanation
Indices: 46313161--46313309 Score: 140
Period size: 50 Copynumber: 3.0 Consensus size: 48
46313151 TAGAGAGTAA
* * * *
46313161 AAAATGTC-CTGCTCCTAGATGCATAGGGGGAGGCTTACGAAAGGTATT
1 AAAATGACTCTGCTCCTAGACGCATAGGAGGAGGCTTACG-AAGGTAGT
* *
46313209 AAAATGACTCTGCTTCTAGACGCATAGGAGGAGGCTTACAGAAGGTGGT
1 AAAATGACTCTGCTCCTAGACGCATAGGAGGAGGCTTAC-GAAGGTAGT
* * * * *
46313258 AATAAAGGCAT-TGCTCCTAGACGCATGGGAAGAGGCTTACGGAAGGTGGT
1 AA-AATGAC-TCTGCTCCTAGACGCATAGGAGGAGGCTTAC-GAAGGTAGT
46313308 AA
1 AA
46313310 TTAAGGCCCT
Statistics
Matches: 85, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
48 7 0.08
49 35 0.41
50 42 0.49
51 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.22
Consensus pattern (48 bp):
AAAATGACTCTGCTCCTAGACGCATAGGAGGAGGCTTACGAAGGTAGT
Found at i:46313293 original size:50 final size:50
Alignment explanation
Indices: 46313218--46313334 Score: 153
Period size: 50 Copynumber: 2.3 Consensus size: 50
46313208 TAAAATGACT
* * *
46313218 CTGCTTCTAGACGCATAGGAGGAGGCTTACAGAAGGTGGTAATAAAGGCA
1 CTGCTCCTAGACGCATGGGAAGAGGCTTACAGAAGGTGGTAATAAAGGCA
* * * *
46313268 TTGCTCCTAGACGCATGGGAAGAGGCTTACGGAAGGTGGTAATTAAGGCC
1 CTGCTCCTAGACGCATGGGAAGAGGCTTACAGAAGGTGGTAATAAAGGCA
* *
46313318 CTACTCCTAGAAGCATG
1 CTGCTCCTAGACGCATG
46313335 TGGGGAGACT
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.29, C:0.19, G:0.31, T:0.21
Consensus pattern (50 bp):
CTGCTCCTAGACGCATGGGAAGAGGCTTACAGAAGGTGGTAATAAAGGCA
Found at i:46313353 original size:50 final size:50
Alignment explanation
Indices: 46313224--46313354 Score: 147
Period size: 50 Copynumber: 2.6 Consensus size: 50
46313214 GACTCTGCTT
* * * *
46313224 CTAGACGCATAGGAGGAGGCTTACAGAAGGTGGTAATAAAGGCATTGCTC
1 CTAGAAGCATGGGAGGAGGCTTACAGAAGGTGGTAATAAAGGCACTACTC
* * * * *
46313274 CTAGACGCATGGGAAGAGGCTTACGGAAGGTGGTAATTAAGGCCCTACTC
1 CTAGAAGCATGGGAGGAGGCTTACAGAAGGTGGTAATAAAGGCACTACTC
* *
46313324 CTAGAAGCATGTGG-GGAGACTTATAGAAGGT
1 CTAGAAGCATG-GGAGGAGGCTTACAGAAGGT
46313355 ATTTAAATGA
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
50 66 0.97
51 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.33, T:0.21
Consensus pattern (50 bp):
CTAGAAGCATGGGAGGAGGCTTACAGAAGGTGGTAATAAAGGCACTACTC
Found at i:46313470 original size:50 final size:46
Alignment explanation
Indices: 46313358--46313471 Score: 113
Period size: 46 Copynumber: 2.4 Consensus size: 46
46313348 AGAAGGTATT
*
46313358 TAAATGACCCTACTCCTAGACACATGGGGGAGGCTCACGAAAAGTAA
1 TAAATGA-CCTACTCCCAGACACATGGGGGAGGCTCACGAAAAGTAA
* * * * *
46313405 TAAA-AACCTTGCTCCCAGACACATGGGAGGGGGCTTACGGAAAGTGATAA
1 TAAATGACC-TACTCCCAGACACATGGG-GGAGGCTCAC-GAAA-AG-TAA
46313455 TAAATGACCTACTCCCA
1 TAAATGACCTACTCCCA
46313472 TATGCATAGG
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
45 2 0.04
46 17 0.32
47 12 0.23
48 4 0.08
49 1 0.02
50 14 0.26
51 3 0.06
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (46 bp):
TAAATGACCTACTCCCAGACACATGGGGGAGGCTCACGAAAAGTAA
Found at i:46313498 original size:145 final size:148
Alignment explanation
Indices: 46313172--46313499 Score: 340
Period size: 145 Copynumber: 2.2 Consensus size: 148
46313162 AAATGTCCTG
* * * * * * *
46313172 CTCCTAGATGCATAGGGGGAGGCTTACGAAAGGTATTAAAATGACTCTGCTTCTAGACGCATAGG
1 CTCCCAGATGCATAGGGGGAGACTTACGGAAGGTATTAAAATGACCCTACTCCTAGACACATAGG
* ** ** * *
46313237 AGGAGGCTTACAGAAGGTGGTAATAAAGGCATTGCTCCTAGACGCATGGGAAGAGGCTTACGGAA
66 AGGAGGCTCACAGAA-GAAGTAATAAAAACATTGCTCCCAGACACATGGGAAGAGGCTTACGGAA
* * * *
46313302 GGTGGTAATTAAGGCCCTA
130 AGTGATAATAAAGGACCTA
* * ** *
46313321 CTCCTAGAAGCAT-GTGGGGAGACTTATAGAAGGTATTTAAATGACCCTACTCCTAGACACAT-G
1 CTCCCAGATGCATAG-GGGGAGACTTACGGAAGGTATTAAAATGACCCTACTCCTAGACACATAG
* * * *
46313384 GGGGAGGCTCAC-GAA-AAGTAATAAAAACCTTGCTCCCAGACACATGGGAGGGGGCTTACGGAA
65 GAGGAGGCTCACAGAAGAAGTAATAAAAACATTGCTCCCAGACACATGGGAAGAGGCTTACGGAA
*
46313447 AGTGATAATAAATGACCTA
130 AGTGATAATAAAGGACCTA
* *
46313466 CTCCCATATGCATAGGGCGAGACTTACGGAAGGT
1 CTCCCAGATGCATAGGGGGAGACTTACGGAAGGT
46313500 GGTAATAGTT
Statistics
Matches: 145, Mismatches: 32, Indels: 8
0.78 0.17 0.04
Matches are distributed among these distances:
145 79 0.54
146 1 0.01
147 3 0.02
148 12 0.08
149 50 0.34
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (148 bp):
CTCCCAGATGCATAGGGGGAGACTTACGGAAGGTATTAAAATGACCCTACTCCTAGACACATAGG
AGGAGGCTCACAGAAGAAGTAATAAAAACATTGCTCCCAGACACATGGGAAGAGGCTTACGGAAA
GTGATAATAAAGGACCTA
Found at i:46314667 original size:12 final size:12
Alignment explanation
Indices: 46314650--46314680 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
46314640 TACAAAATCT
46314650 GAATTTAATTTC
1 GAATTTAATTTC
46314662 GAATTTAATTTC
1 GAATTTAATTTC
46314674 GAATTTA
1 GAATTTA
46314681 TTTAATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (12 bp):
GAATTTAATTTC
Found at i:46317258 original size:40 final size:40
Alignment explanation
Indices: 46317160--46317422 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
46317150 TCCTCGTTCA
* * ** *
46317160 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCTCAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* *
46317199 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
46317239 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
46317279 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
46317319 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
46317359 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
46317399 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46317423 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:46319059 original size:77 final size:77
Alignment explanation
Indices: 46318932--46319080 Score: 298
Period size: 77 Copynumber: 1.9 Consensus size: 77
46318922 CAGTACATCA
46318932 AAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATCGAGCT
1 AAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATCGAGCT
46318997 CTCGGTCCACTT
66 CTCGGTCCACTT
46319009 AAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATCGAGCT
1 AAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATCGAGCT
46319074 CTCGGTC
66 CTCGGTC
46319081 TCCCAAGTAG
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 72 1.00
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (77 bp):
AAGAAATTTTCGTCCCCGAAAATCTTACCGGTAAATAGGTTTGGGTATCGTTCTTTCATCGAGCT
CTCGGTCCACTT
Found at i:46323960 original size:83 final size:83
Alignment explanation
Indices: 46323821--46323985 Score: 321
Period size: 83 Copynumber: 2.0 Consensus size: 83
46323811 GACCTTTTCC
*
46323821 CATTACGACTGGGATATCTCTCTGCACAGAGCTTCAATACTGATGCCGTTTGTTTCTATGCAAAC
1 CATTACGACTGGGATATCTCTCTGCACAGAGCTTCAATACTGATACCGTTTGTTTCTATGCAAAC
46323886 TAGACTCAGAGAGGAATA
66 TAGACTCAGAGAGGAATA
46323904 CATTACGACTGGGATATCTCTCTGCACAGAGCTTCAATACTGATACCGTTTGTTTCTATGCAAAC
1 CATTACGACTGGGATATCTCTCTGCACAGAGCTTCAATACTGATACCGTTTGTTTCTATGCAAAC
46323969 TAGACTCAGAGAGGAAT
66 TAGACTCAGAGAGGAAT
46323986 CCATACATAT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 81 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (83 bp):
CATTACGACTGGGATATCTCTCTGCACAGAGCTTCAATACTGATACCGTTTGTTTCTATGCAAAC
TAGACTCAGAGAGGAATA
Found at i:46325106 original size:40 final size:40
Alignment explanation
Indices: 46325008--46325270 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
46324998 TCCTCGTTCA
* * * * *
46325008 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
46325047 AATGCCTTCGGGACATAACCAGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
46325087 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
46325127 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
46325167 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
46325207 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
46325247 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
46325271 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 36 0.18
40 154 0.78
41 8 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:46331901 original size:19 final size:20
Alignment explanation
Indices: 46331877--46331914 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
46331867 GGTACCACCA
46331877 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
46331896 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
46331915 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:46332253 original size:92 final size:93
Alignment explanation
Indices: 46332144--46332313 Score: 245
Period size: 92 Copynumber: 1.8 Consensus size: 93
46332134 GCCCCTAAGT
* * *
46332144 GAACTCGGACTTAACTCAACGAGCTCAGG-CGTTCGCATCCATAAATGAAATCAGACTCAA-TCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCACATCCATAAATGAAATCAGACTCAACTCA
46332207 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
46332236 GAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAAATCAGACTCAACTCAA
46332301 CGAGTTCGGATGC
66 CGAGTTCGGATGC
46332314 TCAACCATCC
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
91 2 0.03
92 49 0.72
93 17 0.25
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAAATCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:46332287 original size:46 final size:46
Alignment explanation
Indices: 46332139--46332310 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
46332129 AACCCGCCCC
* * * **
46332139 TAAGTGAACTCGGACTTAACTCAACGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTTACATCCA
* * * *
46332185 TAAATGAAATCAGACTCAA-TCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTACATCCA
* *
46332232 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
46332277 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
46332311 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
43 7 0.07
44 4 0.04
45 12 0.12
46 56 0.55
47 16 0.16
48 2 0.02
49 4 0.04
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTACATCCA
Found at i:46332767 original size:30 final size:30
Alignment explanation
Indices: 46332733--46332792 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
46332723 ATTTAATAGG
*
46332733 AACTTTAAAAAAATTACACTTTTTCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
46332763 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
46332793 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:46335269 original size:29 final size:29
Alignment explanation
Indices: 46335182--46335269 Score: 142
Period size: 29 Copynumber: 3.1 Consensus size: 29
46335172 GTGAGCATGA
46335182 ATAT-AATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
46335210 ACATAAATGTGATTTAGGCCTAAAGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
46335239 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
46335268 AT
1 AT
46335270 GTGAATATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 3 0.06
29 50 0.94
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:46338890 original size:24 final size:24
Alignment explanation
Indices: 46338863--46338939 Score: 102
Period size: 24 Copynumber: 3.2 Consensus size: 24
46338853 CTATCTGGAG
46338863 CTTCCCGATATGGTTCTTTATGAA
1 CTTCCCGATATGGTTCTTTATGAA
* *
46338887 CTTCCCGATAAGGTTCTTTGTGAA
1 CTTCCCGATATGGTTCTTTATGAA
* *
46338911 CTTCCCGATTATGGCTC-TTATGAG
1 CTTCCCGA-TATGGTTCTTTATGAA
46338935 CTTCC
1 CTTCC
46338940 AGTTATATAG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 40 0.87
25 6 0.13
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (24 bp):
CTTCCCGATATGGTTCTTTATGAA
Found at i:46341771 original size:18 final size:18
Alignment explanation
Indices: 46341757--46341801 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
46341747 TACTGCACTA
46341757 ATTACTGTCACTGCATTG
1 ATTACTGTCACTGCATTG
*
46341775 ATTACTGTTACTGCATTG
1 ATTACTGTCACTGCATTG
46341793 ATTACTGTC
1 ATTACTGTC
46341802 GCTACACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (18 bp):
ATTACTGTCACTGCATTG
Found at i:46341812 original size:18 final size:18
Alignment explanation
Indices: 46341748--46341812 Score: 76
Period size: 18 Copynumber: 3.6 Consensus size: 18
46341738 TTAAATTGTT
*
46341748 ACTGCACTAATTACTGTC
1 ACTGCACTGATTACTGTC
* *
46341766 ACTGCATTGATTACTGTT
1 ACTGCACTGATTACTGTC
*
46341784 ACTGCATTGATTACTGTC
1 ACTGCACTGATTACTGTC
* *
46341802 GCTACACTGAT
1 ACTGCACTGAT
46341813 ACTATTACTG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.25, C:0.23, G:0.15, T:0.37
Consensus pattern (18 bp):
ACTGCACTGATTACTGTC
Found at i:46345412 original size:57 final size:58
Alignment explanation
Indices: 46345304--46345412 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 58
46345294 CATTACAAAA
*
46345304 AGGATTTAGCCTAGACTGGTAATCGTGATATAAGCCCTCTTGAGCATATGTTATAGAT
1 AGGATTTAGCCTAGACGGGTAATCGTGATATAAGCCCTCTTGAGCATATGTTATAGAT
* * *
46345362 AGGATTTAG-CTCGGACGGGTAATCTTGAT-TAAGCTCT-TATGAGCATATGTT
1 AGGATTTAGCCT-AGACGGGTAATCGTGATATAAGCCCTCT-TGAGCATATGTT
46345413 GGAAACAGGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
56 1 0.02
57 21 0.47
58 23 0.51
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (58 bp):
AGGATTTAGCCTAGACGGGTAATCGTGATATAAGCCCTCTTGAGCATATGTTATAGAT
Found at i:46345423 original size:57 final size:58
Alignment explanation
Indices: 46345304--46345425 Score: 133
Period size: 57 Copynumber: 2.1 Consensus size: 58
46345294 CATTACAAAA
* * * *
46345304 AGGATTTAGCCTAGACTGGTAATCGTGATATAAGCCCTCTTGAGCATATGTTATAGAT
1 AGGATTTAGCCTAGACGGGTAATCGTGATATAAGCCCTCTTGAGCATATGTTAGAAAC
* * * *
46345362 AGGATTTAG-CTCGGACGGGTAATCTTGAT-TAAGCTCT-TATGAGCATATGTTGGAAAC
1 AGGATTTAGCCT-AGACGGGTAATCGTGATATAAGCCCTCT-TGAGCATATGTTAGAAAC
46345419 AGGATTT
1 AGGATTT
46345426 CAGTTGGATA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
56 1 0.02
57 30 0.56
58 23 0.43
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.33
Consensus pattern (58 bp):
AGGATTTAGCCTAGACGGGTAATCGTGATATAAGCCCTCTTGAGCATATGTTAGAAAC
Found at i:46349314 original size:55 final size:55
Alignment explanation
Indices: 46349248--46349357 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
46349238 AAATAAAAGT
*
46349248 TTGAAATACCAAGTGACTCAGAAAGAATTGAGTTTGTGTTAATGAAGGTGGCTTC
1 TTGAAATACCAAGTGACTCAGAAAGAATTGAGTTTGTGTCAATGAAGGTGGCTTC
46349303 TTGAAATACCAAGTGACTCAGAAAGAATTGAGTTTGTGTCAATGAAGGTGGCTTC
1 TTGAAATACCAAGTGACTCAGAAAGAATTGAGTTTGTGTCAATGAAGGTGGCTTC
46349358 AATTGTTAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (55 bp):
TTGAAATACCAAGTGACTCAGAAAGAATTGAGTTTGTGTCAATGAAGGTGGCTTC
Found at i:46371035 original size:37 final size:37
Alignment explanation
Indices: 46370976--46371084 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
46370966 AGCTCAGACG
* * *
46370976 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
46371013 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
46371050 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
46371085 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:46371461 original size:24 final size:24
Alignment explanation
Indices: 46371385--46371461 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
46371375 TCACATTCAT
*
46371385 CACATTGGCCATTCGGCCTTATCA
1 CACATAGGCCATTCGGCCTTATCA
* * *
46371409 CACATACG-CATGTTC--ACAT-TCA
1 CACATAGGCCA--TTCGGCCTTATCA
46371431 TCACATAGGCCATTCGGCCTTATCA
1 -CACATAGGCCATTCGGCCTTATCA
46371456 CACATA
1 CACATA
46371462 TATATACGGG
Statistics
Matches: 39, Mismatches: 7, Indels: 14
0.65 0.12 0.23
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 16 0.41
25 6 0.15
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.27
Consensus pattern (24 bp):
CACATAGGCCATTCGGCCTTATCA
Found at i:46371481 original size:145 final size:141
Alignment explanation
Indices: 46371298--46371580 Score: 449
Period size: 145 Copynumber: 2.0 Consensus size: 141
46371288 TTTCGCATTA
* *
46371298 GCCATTCGACCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTC
1 GCCATTCGACCTTACCACATATATTCAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
* ** * *
46371363 ATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
66 ACATACACATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
46371428 TCATCACATAG
131 TCATCACATAG
* *
46371439 GCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTA
1 GCCATTCGACCTTA-C-CACATATAT-T-CAGGTTCACATTCATCACATTGGCCATTCGGCCTTA
46371504 TCACACATACACATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTC
62 TCACACATACACATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTC
46371569 ACATTCATCACA
127 ACATTCATCACA
46371581 GTTATCCAAA
Statistics
Matches: 129, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
141 13 0.10
142 1 0.01
143 9 0.07
144 1 0.01
145 105 0.81
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.30
Consensus pattern (141 bp):
GCCATTCGACCTTACCACATATATTCAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
ACATACACATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
TCATCACATAG
Found at i:46371582 original size:47 final size:47
Alignment explanation
Indices: 46371293--46371580 Score: 396
Period size: 47 Copynumber: 6.0 Consensus size: 47
46371283 ACACGTTTCG
* * * * **
46371293 CATTAGCCATTCGACCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
46371340 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
46371387 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
46371434 CATAGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
* *
46371485 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
46371532 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
46371579 CA
1 CA
46371581 GTTATCCAAA
Statistics
Matches: 218, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 174 0.80
51 44 0.20
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:46371610 original size:98 final size:93
Alignment explanation
Indices: 46371293--46371580 Score: 396
Period size: 98 Copynumber: 3.0 Consensus size: 93
46371283 ACACGTTTCG
* * * * **
46371293 CATTAGCCATTCGACCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA-TGGCCATTCGGCCTT
* *
46371358 ATCTCATATATGCATGTTCACATTCATCA
65 ATCACACATATGCATGTTCACATTCATCA
*
46371387 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATAGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACAT-GGCCATTCGGCCTT
**
46371452 ATCACACATATATATACGGGTTCACATTCATCA
65 ATCACACATATGCAT----GTTCACATTCATCA
*
46371485 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATCCATCACAGTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACA-TGGCCATTCGGCCTT
*
46371550 ATCACACATACGCATGTTCACATTCATCA
65 ATCACACATATGCATGTTCACATTCATCA
46371579 CA
1 CA
46371581 GTTATCCAAA
Statistics
Matches: 173, Mismatches: 15, Indels: 12
0.87 0.08 0.06
Matches are distributed among these distances:
93 1 0.01
94 84 0.49
98 87 0.50
99 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (93 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATGGCCATTCGGCCTTA
TCACACATATGCATGTTCACATTCATCA
Found at i:46373818 original size:81 final size:81
Alignment explanation
Indices: 46373725--46373967 Score: 477
Period size: 81 Copynumber: 3.0 Consensus size: 81
46373715 GCCCATGCCC
*
46373725 TTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATAA
1 TTTATTTTATTAATCCTTACATAATGCACTACCTCAACATGTTTATGACATGTTTTTAGCCATAA
46373790 CATCTTGTCCACCCAT
66 CATCTTGTCCACCCAT
46373806 TTTATTTTATTAATCCTTACATAATGCACTACCTCAACATGTTTATGACATGTTTTTAGCCATAA
1 TTTATTTTATTAATCCTTACATAATGCACTACCTCAACATGTTTATGACATGTTTTTAGCCATAA
46373871 CATCTTGTCCACCCAT
66 CATCTTGTCCACCCAT
46373887 TTTATTTTATTAATCCTTACATAATGCACTACCTCAACATGTTTATGACATGTTTTTAGCCATAA
1 TTTATTTTATTAATCCTTACATAATGCACTACCTCAACATGTTTATGACATGTTTTTAGCCATAA
46373952 CATCTTGTCCACCCAT
66 CATCTTGTCCACCCAT
46373968 GCTCATGGCC
Statistics
Matches: 161, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 161 1.00
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.40
Consensus pattern (81 bp):
TTTATTTTATTAATCCTTACATAATGCACTACCTCAACATGTTTATGACATGTTTTTAGCCATAA
CATCTTGTCCACCCAT
Found at i:46375599 original size:30 final size:30
Alignment explanation
Indices: 46375565--46375622 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
46375555 TTTTCGGGGA
* *
46375565 TAGGGGTAAAATGGTCATTTTATCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
46375595 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
46375623 ATATGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:46376106 original size:46 final size:47
Alignment explanation
Indices: 46375958--46376130 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 47
46375948 GGTTATTGTA
* ** * ** *
46375958 AGCTAGTGTAAGACATGTTTGGGACATGCATCGAACACTTTAC-CAG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATACGTAG
* * * * *
46376004 AGCTTGTGTAAGGCCATGTCTGGGACATGGCATCGGCTTTGAGACG-AG
1 AGCTAGTGTAA-GACATGTCTGGGACAT-GCATCGGCCTCGATACGTAG
*
46376052 TGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATACGTA-
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATACGTAG
* *
46376098 AGCCAGTGTAAGACATGCCTGGGACATGCATCG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCG
46376131 ACTACGAGAA
Statistics
Matches: 103, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
46 54 0.52
47 30 0.29
48 19 0.18
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.24
Consensus pattern (47 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATACGTAG
Found at i:46392087 original size:47 final size:47
Alignment explanation
Indices: 46392028--46392268 Score: 329
Period size: 47 Copynumber: 5.1 Consensus size: 47
46392018 GAAATGATAG
*
46392028 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46392075 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * *
46392124 TAAGGCCTAATGGCCGATGTGATGAAGGCGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
46392171 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
46392218 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
46392265 TAAG
1 TAAG
46392269 TCCCGAAGGG
Statistics
Matches: 170, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
47 126 0.74
49 44 0.26
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.27
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:46392192 original size:96 final size:96
Alignment explanation
Indices: 46392028--46392213 Score: 345
Period size: 96 Copynumber: 1.9 Consensus size: 96
46392018 GAAATGATAG
* * *
46392028 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAAGGCGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
46392093 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
46392124 TAAGGCCTAATGGCCGATGTGATGAAGGCGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAAGGCGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
46392189 GTGATGAATGTGAAAGTGTATATAT
66 GTGATGAATGTGAAAGTGTATATAT
46392214 GTGACGGGGC
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 87 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAAGGCGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:46392263 original size:96 final size:95
Alignment explanation
Indices: 46392029--46392268 Score: 311
Period size: 96 Copynumber: 2.5 Consensus size: 95
46392019 AAATGATAGT
* * * *
46392029 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATG
1 AAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
*
46392094 TGATGAATGTGAAAGTGTATATATATGTGAT
66 TGATGAATGTGAAAGTG-ATATATATGTGAC
* * * * *
46392125 AAGGCCTAATGGCCGATGTGATGAAGGCGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
1 AAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
46392190 TGATGAATGTGAAAGTG-TATATATGTGAC
66 TGATGAATGTGAAAGTGATATATATGTGAC
** * * * **
46392219 GGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 AAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATGTGTGATAAG
46392269 TCCCGAAGGG
Statistics
Matches: 128, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
94 49 0.38
96 79 0.62
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.27
Consensus pattern (95 bp):
AAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
TGATGAATGTGAAAGTGATATATATGTGAC
Found at i:46392443 original size:37 final size:37
Alignment explanation
Indices: 46392387--46392465 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
46392377 CCGAGCTCTA
* *
46392387 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
46392424 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
46392461 AAGAC
1 AAGAC
46392466 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:46399598 original size:27 final size:27
Alignment explanation
Indices: 46399552--46399907 Score: 390
Period size: 27 Copynumber: 13.2 Consensus size: 27
46399542 ATTACTGAAA
* * * ***
46399552 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAGAATTACCATTT
*
46399579 TACCCTCGATTTATAGAATTACCGTTTT
1 TACCCTCGATTTATAGAATTACC-ATTT
*
46399607 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
46399634 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* **
46399661 TACCCTCGATTTATAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
46399688 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
46399715 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
46399742 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
46399769 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
46399796 TACCCTCGATGTACAAAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
46399823 TACCCTCGATTTA-AAAAATATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * **
46399849 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
46399876 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
46399903 TACCC
1 TACCC
46399908 CTAGGGTGTT
Statistics
Matches: 284, Mismatches: 43, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 21 0.07
27 241 0.85
28 22 0.08
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:46399689 original size:54 final size:54
Alignment explanation
Indices: 46399552--46399907 Score: 435
Period size: 54 Copynumber: 6.6 Consensus size: 54
46399542 ATTACTGAAA
* * *** *
46399552 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCG-TTT
* *
46399607 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
** * **
46399661 TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * * * *
46399715 TACCCTTGATTTATAGAATTACCGTTTTACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * * * **
46399769 TACCCTCAATTTACAAAATTACCATTTTACCCTCGATGTACAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
* * * * *
46399823 TACCCTCGATTTA-AAAAATATCGTTTTACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
46399876 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAAAATTACCATTTTACCC
46399908 CTAGGGTGTT
Statistics
Matches: 259, Mismatches: 41, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
53 46 0.18
54 170 0.66
55 43 0.17
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:46399726 original size:81 final size:81
Alignment explanation
Indices: 46399552--46399907 Score: 444
Period size: 81 Copynumber: 4.4 Consensus size: 81
46399542 ATTACTGAAA
* ** *** * *
46399552 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACCG-TTTTACCCTCAAT
*
46399617 TTATAGAATTACTATTT
65 TTACAGAATTACTATTT
* * * *
46399634 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCAATT
*
46399699 TATAGAATTACTATTT
66 TACAGAATTACTATTT
* * * * * *
46399715 TACCCTTGATTTATAGAATTACCGTTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCAATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCAATT
* *
46399780 TACAAAATTACCATTT
66 TACAGAATTACTATTT
* * * *
46399796 TACCCTCGATGTACAAAATTACTATTTTACCCTCGATTTA-AAAAATATCGTTTTACCCTCAATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCAATT
*
46399860 TACAGAATTACTGTTT
66 TACAGAATTACTATTT
*
46399876 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAAAATTACCATTTTACCC
46399908 CTAGGGTGTT
Statistics
Matches: 239, Mismatches: 35, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
80 63 0.26
81 135 0.56
82 41 0.17
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCAATT
TACAGAATTACTATTT
Found at i:46400448 original size:31 final size:31
Alignment explanation
Indices: 46400413--46400485 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
46400403 TTGTATTCAC
* * *
46400413 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
*
46400444 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
46400475 ATTCTGATTCT
1 ATTCTGATTCT
46400486 GTCACCTGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.22, C:0.19, G:0.11, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTAATACTG
Found at i:46400504 original size:31 final size:28
Alignment explanation
Indices: 46400413--46400508 Score: 90
Period size: 31 Copynumber: 3.3 Consensus size: 28
46400403 TTGTATTCAC
* *
46400413 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGTCACCT-AT--TG
*
46400444 ATTCTGATTCTAATTCTGTCACCTA---
1 ATTCTGATTCTGATTCTGTCACCTATTG
46400469 ATTCTGATTCTGATTCTGTCACCTGATTTTG
1 ATTCTGATTCTGATTCTGTCACCT-A--TTG
46400500 ATTCTGATT
1 ATTCTGATT
46400509 GTCATTTTGA
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
25 23 0.42
26 1 0.02
30 1 0.02
31 30 0.55
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (28 bp):
ATTCTGATTCTGATTCTGTCACCTATTG
Found at i:46400505 original size:25 final size:25
Alignment explanation
Indices: 46400441--46400508 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
46400431 TTACCTAATA
*
46400441 CTGATTCTGATTCTAATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
*
46400466 CTAATTCTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
*
46400491 CTGATTTTGATTCTGATT
1 CTGATTCTGATTCTGATT
46400509 GTCATTTTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:46401762 original size:30 final size:30
Alignment explanation
Indices: 46401706--46401762 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
46401696 TTTCAGGCCT
* **
46401706 AGGGGTAAAATTGTCATTTTGTCAAAGTCG
1 AGGGGTAAAATGGTCATTTTACCAAAGTCG
*
46401736 AGGGGTAAACTGGTCATTTTACCAAAG
1 AGGGGTAAAATGGTCATTTTACCAAAG
46401763 ATATGAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (30 bp):
AGGGGTAAAATGGTCATTTTACCAAAGTCG
Found at i:46402921 original size:37 final size:37
Alignment explanation
Indices: 46402864--46402966 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
46402854 CGAATAGTCC
* *
46402864 CCACACGTAGTTATCAGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
46402901 CCAGACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
46402938 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
46402967 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:46403165 original size:48 final size:48
Alignment explanation
Indices: 46403107--46404581 Score: 2509
Period size: 48 Copynumber: 30.9 Consensus size: 48
46403097 ATATACACAC
* * *
46403107 ATCTCCTACATATTTCACACTAGCCATTCAGCTTTACCACATATG-CAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATA-GACAT
* * *
46403155 ATCTCATACATATTTCACACTAGCCATTAGGCTTTACCACATATACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
* * *
46403203 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
*
46403251 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
*
46403299 ATCTCATATATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403347 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403395 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403443 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403491 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403539 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403587 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403635 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403683 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403731 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403779 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403827 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403875 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403923 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46403971 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46404019 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
46404067 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
*
46404115 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
* * * *
46404163 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
* * *
46404209 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
* *
46404257 ATCTCATACATATTTCACACTAGCCATTCGGCTTGACCAC--AGACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
* * *
46404303 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAGATACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
* * * *
46404351 ATCTCATACATATTTCACACTAGCCATTCGGCTTTAACACAGATACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
* * * *
46404399 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
* * * *
46404445 ATCTCATACATATTTCACACTAGCCATTCGGCTTTAACACAGATACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
* * * *
46404493 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
*
46404539 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
1 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATA
46404582 TTCACTACAA
Statistics
Matches: 1378, Mismatches: 40, Indels: 18
0.96 0.03 0.01
Matches are distributed among these distances:
46 171 0.12
48 1207 0.88
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (48 bp):
ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATAGACAT
Found at i:46409385 original size:65 final size:65
Alignment explanation
Indices: 46409310--46409452 Score: 155
Period size: 65 Copynumber: 2.2 Consensus size: 65
46409300 CACAGCCTCA
* * *
46409310 CACACAGGCGTGTGA-TCGTCCGTGTGGTACAAGTCAGTATATCCC-CTAAATGGCACACGGCCT
1 CACACGGGCGTGTGACTCGGCCGTGTGGT-CAAGTCAGTATA-CCCTCCAAATGGCACACGGCCT
46409373 AG
64 AG
* * * * * ** *
46409375 CACACGGGCGTCTGACTTGGCCGTGTTGTGAAGTCAGTATACCCTCCAATTTTCACACGGCCTGG
1 CACACGGGCGTGTGACTCGGCCGTGTGGTCAAGTCAGTATACCCTCCAAATGGCACACGGCCTAG
46409440 CACACGGGCGTGT
1 CACACGGGCGTGT
46409453 CTTTGGCCGT
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
64 3 0.05
65 51 0.80
66 10 0.16
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (65 bp):
CACACGGGCGTGTGACTCGGCCGTGTGGTCAAGTCAGTATACCCTCCAAATGGCACACGGCCTAG
Found at i:46422287 original size:13 final size:13
Alignment explanation
Indices: 46422269--46422295 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46422259 GCTCAGCAGG
46422269 GACACGCCCGTGT
1 GACACGCCCGTGT
46422282 GACACGCCCGTGT
1 GACACGCCCGTGT
46422295 G
1 G
46422296 CGATAACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:46442103 original size:49 final size:48
Alignment explanation
Indices: 46442039--46442209 Score: 156
Period size: 49 Copynumber: 3.5 Consensus size: 48
46442029 GGGATGTGTC
*
46442039 AGTGTAAGACCATGTTTGGGACATGGCATCGCACGGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCAC-GATATGTGAGAGCT
* * * *
46442088 AGTGTAAGACGATGTTTGGGATATGGCATCAGC-CTTGAT-T-TCGATAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCAC--GATATGT-GAGAGCT
* * *
46442136 CAGTGTAAGACCATGTCTGGGACATAGCATCG-AC-TTGATGTAAGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGCACGAT-ATGTGAGAGCT
*
46442184 AGTGTAGGACCATGTCTGGGACATGG
1 AGTGTAAGACCATGTCTGGGACATGG
46442210 TATTGGCATT
Statistics
Matches: 100, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
45 1 0.01
47 28 0.28
48 6 0.06
49 60 0.60
50 5 0.05
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGCACGATATGTGAGAGCT
Found at i:46448431 original size:96 final size:96
Alignment explanation
Indices: 46448264--46448509 Score: 393
Period size: 96 Copynumber: 2.6 Consensus size: 96
46448254 GATGGCACCG
* *
46448264 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCTAAGAGGGCAAAGGGGAGCAAGTCTGTCAT
1 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGCAAAGAGGAGCAAGTCTGTCAT
* *
46448329 CAAAGGGAACGATGGAGTAGACAAGGACCCC
66 CAAAGGGAACGATGGAGCAGACAAAGACCCC
* * *
46448360 AAGAAGCTTGGTTCGAGCAAGAGTAAAGCCGAAGCCAAGAAGGCAAAGAGGAGCAAGTCTGTTAT
1 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGCAAAGAGGAGCAAGTCTGTCAT
* *
46448425 CGAAGGGAACGATGGAGCAGACAAAGAGCCC
66 CAAAGGGAACGATGGAGCAGACAAAGACCCC
* *
46448456 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCAAAGCCAAGAGGGCTAAGAGGAGC
1 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
46448510 TGAAAGCACA
Statistics
Matches: 137, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 137 1.00
ACGTcount: A:0.37, C:0.17, G:0.34, T:0.12
Consensus pattern (96 bp):
AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGCAAAGAGGAGCAAGTCTGTCAT
CAAAGGGAACGATGGAGCAGACAAAGACCCC
Found at i:46454579 original size:40 final size:39
Alignment explanation
Indices: 46454535--46454728 Score: 262
Period size: 40 Copynumber: 4.9 Consensus size: 39
46454525 GGATATAACT
* * *
46454535 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
*
46454575 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
46454615 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGTA
* * * *
46454655 ACTCGCACAGATGCCTTCGGAACTTAGCCCGGATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
* * *
46454694 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGGTTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTT
46454729 TCATCCAAAT
Statistics
Matches: 139, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 38 0.27
40 97 0.70
41 4 0.03
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:46458210 original size:33 final size:33
Alignment explanation
Indices: 46458168--46458233 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
46458158 ATCGAAACGG
46458168 GTAGTTTGG-TTTAAAAAAAAATTTAGATGATTT
1 GTAGTTTGGTTTTAAAAAAAAA-TTAGATGATTT
46458201 GTAGTTTGGTTTTAAAAAAAAATTAGATGATTT
1 GTAGTTTGGTTTTAAAAAAAAATTAGATGATTT
46458234 ACCTTGTAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
33 20 0.62
34 12 0.38
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (33 bp):
GTAGTTTGGTTTTAAAAAAAAATTAGATGATTT
Found at i:46475516 original size:36 final size:36
Alignment explanation
Indices: 46475455--46475527 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
46475445 GGAAAATGTG
* *
46475455 AAATACTACCAAGTATCGGTATCGGCATTCCATAGA
1 AAATACTACCAAGGACCGGTATCGGCATTCCATAGA
* * *
46475491 AAATACTACCACGGACCGGTGTCGGCATTCCGTAGA
1 AAATACTACCAAGGACCGGTATCGGCATTCCATAGA
46475527 A
1 A
46475528 GATGGTTGAG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.22
Consensus pattern (36 bp):
AAATACTACCAAGGACCGGTATCGGCATTCCATAGA
Found at i:46475691 original size:46 final size:46
Alignment explanation
Indices: 46475621--46475739 Score: 179
Period size: 46 Copynumber: 2.6 Consensus size: 46
46475611 TTTGGGCATT
* *
46475621 CGAACTCGTTG-GTTTGAGTCCGAGTTCCCTTATGGATGCGAATGTC
1 CGAACTCGTTGAG-TTGAGTTCGAGTTCACTTATGGATGCGAATGTC
46475667 CGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTC
*
46475713 CAAACTCGTTGAGTTGAG-TCTGAGTTC
1 CGAACTCGTTGAGTTGAGTTC-GAGTTC
46475740 GAGAGATGTA
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
45 2 0.03
46 65 0.96
47 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.28, T:0.33
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTC
Found at i:46477998 original size:46 final size:46
Alignment explanation
Indices: 46477942--46478117 Score: 146
Period size: 46 Copynumber: 3.8 Consensus size: 46
46477932 TATTTGGGCA
* *
46477942 TCCGAACTCGTTGAGTTAAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
* * *
46477988 TCCGAGCTCGTTGAGTTGAGT-TCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCT-GAGTTCACTTATGGATGCGAA-T--G
* * *
46478033 CATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
* * * **
46478081 CCCGAGCTTGTTTAGTTGAGTCTGAGTTTGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
46478118 GCGGCTTACA
Statistics
Matches: 103, Mismatches: 16, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 57 0.55
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.33
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
Found at i:46482427 original size:26 final size:26
Alignment explanation
Indices: 46482397--46482504 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
46482387 TGAAATTCCC
* *
46482397 ATCATGGAACATTTACTTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
46482423 ATCATGAAACATTTACCTAATCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
46482449 ATCATAAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
46482475 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
46482501 ATCA
1 ATCA
46482505 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.32
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:46492263 original size:38 final size:37
Alignment explanation
Indices: 46492207--46492281 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 37
46492197 CTCCTCGAAC
* *
46492207 CACCATGACCATTCAATGGAGAGGTAAGTCGAGCTTA
1 CACCATGACCACTAAATGGAGAGGTAAGTCGAGCTTA
46492244 NCACCATGACCACTAAATGGAGAGGTAAGTCGAGCTTA
1 -CACCATGACCACTAAATGGAGAGGTAAGTCGAGCTTA
46492282 GACTATAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.20
Consensus pattern (37 bp):
CACCATGACCACTAAATGGAGAGGTAAGTCGAGCTTA
Found at i:46493167 original size:23 final size:23
Alignment explanation
Indices: 46493141--46493187 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
46493131 CATTCTCTTG
*
46493141 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
46493164 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
46493187 T
1 T
46493188 AATGTCATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:46499536 original size:40 final size:39
Alignment explanation
Indices: 46499474--46499612 Score: 199
Period size: 40 Copynumber: 3.5 Consensus size: 39
46499464 AAACCAAGTA
* * * *
46499474 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTAGCACAAATG
*
46499513 CCTTCGGGACTTAGCCCGGATATAGTAGATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTAGCACAAATG
46499553 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTAGCACAAATG
46499593 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
46499613 AATCATCCGA
Statistics
Matches: 91, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
39 14 0.15
40 76 0.84
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTAGCACAAATG
Found at i:46499856 original size:149 final size:149
Alignment explanation
Indices: 46499614--46499907 Score: 588
Period size: 149 Copynumber: 2.0 Consensus size: 149
46499604 TAGCCCGGAA
46499614 ATCATCCGAATATTCATGCATATATCAGTAAATCATGACACATCTTTATTTCATTTTCATAACTA
1 ATCATCCGAATATTCATGCATATATCAGTAAATCATGACACATCTTTATTTCATTTTCATAACTA
46499679 GAATTCAAACACAAGTCAACTATTAAGCATTCCCATTTTCGGCTCAATAGCCACATACAAACAGC
66 GAATTCAAACACAAGTCAACTATTAAGCATTCCCATTTTCGGCTCAATAGCCACATACAAACAGC
46499744 ATGATTTGGTTTGCTCGTT
131 ATGATTTGGTTTGCTCGTT
46499763 ATCATCCGAATATTCATGCATATATCAGTAAATCATGACACATCTTTATTTCATTTTCATAACTA
1 ATCATCCGAATATTCATGCATATATCAGTAAATCATGACACATCTTTATTTCATTTTCATAACTA
46499828 GAATTCAAACACAAGTCAACTATTAAGCATTCCCATTTTCGGCTCAATAGCCACATACAAACAGC
66 GAATTCAAACACAAGTCAACTATTAAGCATTCCCATTTTCGGCTCAATAGCCACATACAAACAGC
46499893 ATGATTTGGTTTGCT
131 ATGATTTGGTTTGCT
46499908 TTATGACATG
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
149 145 1.00
ACGTcount: A:0.34, C:0.22, G:0.11, T:0.33
Consensus pattern (149 bp):
ATCATCCGAATATTCATGCATATATCAGTAAATCATGACACATCTTTATTTCATTTTCATAACTA
GAATTCAAACACAAGTCAACTATTAAGCATTCCCATTTTCGGCTCAATAGCCACATACAAACAGC
ATGATTTGGTTTGCTCGTT
Found at i:46507136 original size:9 final size:9
Alignment explanation
Indices: 46507118--46507165 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
46507108 TAAGTAAACT
46507118 AATAATACA
1 AATAATACA
*
46507127 AATGATACA
1 AATAATACA
*
46507136 ATTAATACA
1 AATAATACA
* *
46507145 AACATTACA
1 AATAATACA
*
46507154 AATAATATA
1 AATAATACA
46507163 AAT
1 AAT
46507166 GATATAATAA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.27
Consensus pattern (9 bp):
AATAATACA
Found at i:46507143 original size:18 final size:18
Alignment explanation
Indices: 46507118--46507169 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
46507108 TAAGTAAACT
46507118 AATAATACAAATGATACA
1 AATAATACAAATGATACA
* *
46507136 ATTAATACAAA-CATTACA
1 AATAATACAAATGA-TACA
*
46507154 AATAATATAAATGATA
1 AATAATACAAATGATA
46507170 TAATAAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
17 1 0.04
18 25 0.93
19 1 0.04
ACGTcount: A:0.60, C:0.10, G:0.04, T:0.27
Consensus pattern (18 bp):
AATAATACAAATGATACA
Found at i:46508601 original size:16 final size:15
Alignment explanation
Indices: 46508564--46508602 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
46508554 TCTTAATTTA
*
46508564 TTTTTTTGTTTTTGT
1 TTTTTTTATTTTTGT
*
46508579 TTATTTTTATTTTTGG
1 TT-TTTTTATTTTTGT
46508595 TTTTTTTA
1 TTTTTTTA
46508603 GCCCGGGCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.08, C:0.00, G:0.10, T:0.82
Consensus pattern (15 bp):
TTTTTTTATTTTTGT
Found at i:46511876 original size:40 final size:40
Alignment explanation
Indices: 46511832--46512143 Score: 372
Period size: 40 Copynumber: 7.8 Consensus size: 40
46511822 ATAACCACAA
*
46511832 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* * * * * *
46511872 GCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* * * *
46511912 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
*
46511952 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* * * * * *
46511992 GCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* * * *
46512032 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* * * *
46512072 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
* *
46512112 GCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
46512144 CATTCAAATG
Statistics
Matches: 222, Mismatches: 50, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 222 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTAACTC
Found at i:46512045 original size:120 final size:120
Alignment explanation
Indices: 46511832--46512142 Score: 543
Period size: 120 Copynumber: 2.6 Consensus size: 120
46511822 ATAACCACAA
46511832 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTC
46511897 CGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
66 CGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
46511952 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTC
46512017 CGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
66 CGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
** * * * * *
46512072 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGA-CTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
46512136 CCGGATA
65 CCGGATA
46512143 TCATTCAAAT
Statistics
Matches: 183, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 180 0.98
121 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTC
CGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
Found at i:46513994 original size:40 final size:40
Alignment explanation
Indices: 46513920--46514101 Score: 267
Period size: 40 Copynumber: 4.6 Consensus size: 40
46513910 AACCCAAGTA
* * *
46513920 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
46513959 CCTTCGAGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
46513999 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
46514039 CCTTCAGGACTTAGCCCGGATAAAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
46514079 CCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
46514102 CATCCGAATA
Statistics
Matches: 129, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 12 0.09
40 117 0.91
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:46515478 original size:13 final size:13
Alignment explanation
Indices: 46515460--46515485 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46515450 ATTTTTATTT
46515460 TTAACATAAAATA
1 TTAACATAAAATA
46515473 TTAACATAAAATA
1 TTAACATAAAATA
46515486 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:46520678 original size:40 final size:41
Alignment explanation
Indices: 46520603--46520705 Score: 135
Period size: 41 Copynumber: 2.6 Consensus size: 41
46520593 AACCCATGTA
46520603 CCTTCGGGAT-TTAG-CCGGATATAGCACCTCACAC-AAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGCACCTCACACAAAATG
46520642 CCTTCGGGTCTTAGCCCGGATATAGTCA-CT-AGCACAAAATG
1 CCTTCGGGTCTTAGCCCGGATATAG-CACCTCA-CACAAAATG
*
46520683 CCTTCGAGTCTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
46520706 CATCCGAATA
Statistics
Matches: 58, Mismatches: 1, Indels: 8
0.87 0.01 0.12
Matches are distributed among these distances:
38 1 0.02
39 13 0.22
40 15 0.26
41 29 0.50
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (41 bp):
CCTTCGGGTCTTAGCCCGGATATAGCACCTCACACAAAATG
Found at i:46520773 original size:60 final size:60
Alignment explanation
Indices: 46520680--46520801 Score: 244
Period size: 60 Copynumber: 2.0 Consensus size: 60
46520670 CTAGCACAAA
46520680 ATGCCTTCGAGTCTTAGCCCGGATATCATCCGAATAATCATGCACATATATCAATAAATC
1 ATGCCTTCGAGTCTTAGCCCGGATATCATCCGAATAATCATGCACATATATCAATAAATC
46520740 ATGCCTTCGAGTCTTAGCCCGGATATCATCCGAATAATCATGCACATATATCAATAAATC
1 ATGCCTTCGAGTCTTAGCCCGGATATCATCCGAATAATCATGCACATATATCAATAAATC
46520800 AT
1 AT
46520802 AACACATCTA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.29
Consensus pattern (60 bp):
ATGCCTTCGAGTCTTAGCCCGGATATCATCCGAATAATCATGCACATATATCAATAAATC
Found at i:46528377 original size:40 final size:40
Alignment explanation
Indices: 46528346--46528557 Score: 243
Period size: 40 Copynumber: 5.3 Consensus size: 40
46528336 GGACTAAGAT
46528346 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
46528386 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
* *
46528426 CCGAAGGCCTTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
* * ** * *
46528466 CCGAAGGCATTCGTGCGAGTTGTTAAA-TCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCC
* * * * * *
46528506 CCGAAGGCA-TTGTGTGAGTTACTAAA-ACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
46528545 CCGAAGGCATTTG
1 CCGAAGGCATTTG
46528558 AACGAGGAGC
Statistics
Matches: 154, Mismatches: 14, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
39 32 0.21
40 119 0.77
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
Found at i:46528430 original size:80 final size:80
Alignment explanation
Indices: 46528346--46528557 Score: 268
Period size: 80 Copynumber: 2.7 Consensus size: 80
46528336 GGACTAAGAT
*
46528346 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGAT-AC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATGAC
46528409 AAATTCCGGGTTAAGCC
65 AAA-TCCGGGTTAAGCC
* * * **
46528426 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATGACA
* *
46528491 AATCCGGGTTATGTC
66 AATCCGGGTTAAGCC
* * * * *
46528506 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
46528558 AACGAGGAGC
Statistics
Matches: 115, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
79 37 0.32
80 72 0.63
81 6 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATGACA
AATCCGGGTTAAGCC
Found at i:46528575 original size:79 final size:80
Alignment explanation
Indices: 46528346--46528590 Score: 205
Period size: 80 Copynumber: 3.1 Consensus size: 80
46528336 GGACTAAGAT
* * * * ** *
46528346 CCGAAGG-CATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCATTTGTGCGA-GATA
1 CCGAAGGCCA-TTGTGCGAGATACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-G
*
46528408 C-AAATTCCGGGTTAAGCC
63 CTAAA-TCCGGGTTAAGTC
* * * ** ** *
46528426 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
46528491 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * * *
46528506 CCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
46528570 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
46528584 CCGAAGG
1 CCGAAGG
46528591 TACGTGATTT
Statistics
Matches: 137, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
78 14 0.10
79 49 0.36
80 67 0.49
81 7 0.05
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:46531390 original size:47 final size:47
Alignment explanation
Indices: 46531315--46531466 Score: 182
Period size: 47 Copynumber: 3.3 Consensus size: 47
46531305 TTCGGGACTT
* * * * *
46531315 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC-C
1 ATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTC
* *
46531361 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 -ATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTC
* * *
46531409 ATCACATATATACACTTTCACATTCATCACATC-GTCATTAGGCCTT
1 ATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTC
*
46531455 ATCACATGTATA
1 ATCACATATATA
46531467 TACCAACTTA
Statistics
Matches: 93, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
46 22 0.24
47 70 0.75
48 1 0.01
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTC
Found at i:46532337 original size:19 final size:20
Alignment explanation
Indices: 46532311--46532351 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
46532301 TTTTTAAACA
46532311 ATTTTTTTACAAATCTACTT
1 ATTTTTTTACAAATCTACTT
46532331 ATTTTTTTACAAATCTACTT
1 ATTTTTTTACAAATCTACTT
46532351 A
1 A
46532352 CTCCGGCTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.15, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTTTTTACAAATCTACTT
Found at i:46539829 original size:161 final size:161
Alignment explanation
Indices: 46539645--46539953 Score: 451
Period size: 161 Copynumber: 1.9 Consensus size: 161
46539635 TTGGACCAAG
* *
46539645 ATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATAGCTTC-AAACAACAAAATTGGG
1 ATTTCCAAGATTTGAAATCTTGATTTTCTTGACTCTTGAAATAGC-TCAAAACAACAAAATTGGA
* * *
46539709 CCAAGATTCGGTTTCCTGATTTTCTTGAAAATAAGAAAGTGAATCTTGATCTTCTCTTT-CTTTC
65 CAAAGATTCGGTTTCCTGAATTTCTTGAAAACAAGAAAGTGAATCTTGATCTTCTCTTTCCTTT-
*
46539773 GCGTACGCATCTAAGGCCTTTGTGACTCGTATC
129 GCATACGCATCTAAGGCCTTTGTGACTCGTATC
* ** *
46539806 ATTTCCAAGATTTGAAATCTTGATTTTCTTGACTCTTGAAATCGCTCAAAACAGTAAGATTGGAC
1 ATTTCCAAGATTTGAAATCTTGATTTTCTTGACTCTTGAAATAGCTCAAAACAACAAAATTGGAC
* * * * *
46539871 AAAGATTCGGTTTCTTGAATTTCTTGAAAACAAGATAGTGAATCTTGATTTTCTTTTTCCTTTGT
66 AAAGATTCGGTTTCCTGAATTTCTTGAAAACAAGAAAGTGAATCTTGATCTTCTCTTTCCTTTGC
46539936 ATACGCATCTAAGGCCTT
131 ATACGCATCTAAGGCCTT
46539954 GCTAATGAAG
Statistics
Matches: 131, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
160 2 0.02
161 125 0.95
162 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (161 bp):
ATTTCCAAGATTTGAAATCTTGATTTTCTTGACTCTTGAAATAGCTCAAAACAACAAAATTGGAC
AAAGATTCGGTTTCCTGAATTTCTTGAAAACAAGAAAGTGAATCTTGATCTTCTCTTTCCTTTGC
ATACGCATCTAAGGCCTTTGTGACTCGTATC
Found at i:46551712 original size:20 final size:21
Alignment explanation
Indices: 46551689--46551733 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
46551679 AGCTTGTTTT
*
46551689 AGCTCCAA-CCAGCTCATTTG
1 AGCTCCAATCCAGCTCATTCG
*
46551709 AGCT-CAATTCAGCTCATTCG
1 AGCTCCAATCCAGCTCATTCG
46551729 AGCTC
1 AGCTC
46551734 AATTTAGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (21 bp):
AGCTCCAATCCAGCTCATTCG
Found at i:46551734 original size:20 final size:20
Alignment explanation
Indices: 46551698--46551742 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
46551688 TAGCTCCAAC
*
46551698 CAGCTCATTTGAGCTCAATT
1 CAGCTCATTCGAGCTCAATT
46551718 CAGCTCATTCGAGCTCAATT
1 CAGCTCATTCGAGCTCAATT
*
46551738 TAGCT
1 CAGCT
46551743 TTCCATCAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (20 bp):
CAGCTCATTCGAGCTCAATT
Found at i:46551924 original size:22 final size:22
Alignment explanation
Indices: 46551881--46551929 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
46551871 ATCTAGCCGC
*
46551881 ATTTATTGTTAATTAT-ATTTT
1 ATTTATTGTTAATTATAATTTA
* *
46551902 ATTTATGTGTTTATTTTAATTTA
1 ATTTAT-TGTTAATTATAATTTA
46551925 ATTTA
1 ATTTA
46551930 ATATGTCTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 6 0.26
22 8 0.35
23 9 0.39
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (22 bp):
ATTTATTGTTAATTATAATTTA
Found at i:46560294 original size:27 final size:25
Alignment explanation
Indices: 46560262--46560317 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 25
46560252 GTCTGTTTCC
46560262 TTTTCACTCTCAATCTCTTTTTGCTCT
1 TTTTCACTCTCAATCTCTTTTT-CT-T
* *
46560289 TTTTCATTCTCATTCTCTTTTTCTT
1 TTTTCACTCTCAATCTCTTTTTCTT
46560314 TTTT
1 TTTT
46560318 GATTTCTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 5 0.19
26 2 0.07
27 20 0.74
ACGTcount: A:0.09, C:0.25, G:0.02, T:0.64
Consensus pattern (25 bp):
TTTTCACTCTCAATCTCTTTTTCTT
Found at i:46579875 original size:21 final size:20
Alignment explanation
Indices: 46579844--46579883 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
46579834 TCACTCTCTT
46579844 TTTCGATTTCTTGTTCTTTTTC
1 TTTCGATTTCTT-TT-TTTTTC
46579866 TTTC-ATTTCTTTTTTTTT
1 TTTCGATTTCTTTTTTTTT
46579884 GTCTCTCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 2 0.11
21 7 0.39
22 4 0.22
ACGTcount: A:0.05, C:0.15, G:0.05, T:0.75
Consensus pattern (20 bp):
TTTCGATTTCTTTTTTTTTC
Found at i:46582917 original size:20 final size:20
Alignment explanation
Indices: 46582871--46582919 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
46582861 TTTTCCCTTG
*
46582871 CTCTTTTTTTCCCACAATCT
1 CTCTTCTTTTCCCACAATCT
** * *
46582891 CGATTCTTTTCTCTCAATCT
1 CTCTTCTTTTCCCACAATCT
46582911 CTCTTCTTT
1 CTCTTCTTT
46582920 CTTTTCTTTT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.12, C:0.33, G:0.02, T:0.53
Consensus pattern (20 bp):
CTCTTCTTTTCCCACAATCT
Found at i:46585092 original size:20 final size:18
Alignment explanation
Indices: 46585067--46585105 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
46585057 TTTTTTTCTT
46585067 TTTTTTTACATACTTCGAAA
1 TTTTTTTACA-ACTTC-AAA
*
46585087 TTTTTTTTCAACTTCAAA
1 TTTTTTTACAACTTCAAA
46585105 T
1 T
46585106 ACGAATCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 5 0.28
20 9 0.50
ACGTcount: A:0.28, C:0.15, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTTTTTACAACTTCAAA
Found at i:46585100 original size:19 final size:20
Alignment explanation
Indices: 46585066--46585105 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
46585056 CTTTTTTTCT
46585066 TTTTTTTTACATACTTCGAAA
1 TTTTTTTTACATACTTC-AAA
46585087 TTTTTTTT-CA-ACTTCAAA
1 TTTTTTTTACATACTTCAAA
46585105 T
1 T
46585106 ACGAATCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 5 0.26
20 2 0.11
21 8 0.42
ACGTcount: A:0.28, C:0.15, G:0.03, T:0.55
Consensus pattern (20 bp):
TTTTTTTTACATACTTCAAA
Found at i:46585184 original size:18 final size:17
Alignment explanation
Indices: 46585144--46585175 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
46585134 AATCCACGAC
46585144 TTTTTT-TTCTTTTTTG
1 TTTTTTATTCTTTTTTG
46585160 TTTTTTATT-TTTTTTG
1 TTTTTTATTCTTTTTTG
46585176 AATTTTTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 13 0.87
17 2 0.13
ACGTcount: A:0.03, C:0.03, G:0.06, T:0.88
Consensus pattern (17 bp):
TTTTTTATTCTTTTTTG
Found at i:46586023 original size:30 final size:30
Alignment explanation
Indices: 46585975--46586046 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
46585965 ATGTGCATAT
** *
46585975 GGAGCTGAATTAAAGCATGAATGTGTTTAA
1 GGAGCTGAATGGAAGCATGAATGTATTTAA
* * *
46586005 GGAGCTGAATGGAGGCATGCATGTATTTAG
1 GGAGCTGAATGGAAGCATGAATGTATTTAA
46586035 GGAGCTGAATGG
1 GGAGCTGAATGG
46586047 GGAAGCTAGA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.31, C:0.08, G:0.35, T:0.26
Consensus pattern (30 bp):
GGAGCTGAATGGAAGCATGAATGTATTTAA
Found at i:46587449 original size:10 final size:10
Alignment explanation
Indices: 46587436--46587461 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
46587426 TTTAATTTCT
46587436 TTTTTTCAAA
1 TTTTTTCAAA
46587446 TTTTTTCAAA
1 TTTTTTCAAA
46587456 TTTTTT
1 TTTTTT
46587462 TAAACACTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTTTCAAA
Found at i:46591234 original size:18 final size:20
Alignment explanation
Indices: 46591213--46591262 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 20
46591203 AAAGAAAGAT
46591213 AGAAAAAGA-AATCAAAAA-
1 AGAAAAAGAGAATCAAAAAG
*
46591231 AGAAAAAGAGAATGAAAAAG
1 AGAAAAAGAGAATCAAAAAG
46591251 AGAAAAAAGAGA
1 AG-AAAAAGAGA
46591263 TTCAGAGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 2 0.07
21 9 0.32
ACGTcount: A:0.74, C:0.02, G:0.20, T:0.04
Consensus pattern (20 bp):
AGAAAAAGAGAATCAAAAAG
Found at i:46601255 original size:18 final size:18
Alignment explanation
Indices: 46601232--46601268 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
46601222 ATTTTCATCA
*
46601232 CGAATACGATCTTCTGAT
1 CGAATACGATCTTCCGAT
46601250 CGAATACGATCTTCCGAT
1 CGAATACGATCTTCCGAT
46601268 C
1 C
46601269 CTGTCATACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (18 bp):
CGAATACGATCTTCCGAT
Found at i:46601593 original size:16 final size:16
Alignment explanation
Indices: 46601574--46601612 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
46601564 GGGGAAAAGA
46601574 AAAGAAA-AGAAAAATT
1 AAAGAAACA-AAAAATT
*
46601590 AAAGAAACAAACAATT
1 AAAGAAACAAAAAATT
46601606 AAAGAAA
1 AAAGAAA
46601613 GATATAGGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.95
17 1 0.05
ACGTcount: A:0.74, C:0.05, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAGAAACAAAAAATT
Found at i:46604635 original size:37 final size:37
Alignment explanation
Indices: 46604585--46604658 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
46604575 TCGAGAAAGA
46604585 TTGCACAACTCCCTTCAAACGGCTCTAATCTCCCCTC
1 TTGCACAACTCCCTTCAAACGGCTCTAATCTCCCCTC
46604622 TTGCACAACTCCCTTCAAACGGCTCTAATCTCCCCTC
1 TTGCACAACTCCCTTCAAACGGCTCTAATCTCCCCTC
46604659 CAATGACGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.22, C:0.43, G:0.08, T:0.27
Consensus pattern (37 bp):
TTGCACAACTCCCTTCAAACGGCTCTAATCTCCCCTC
Found at i:46606880 original size:18 final size:17
Alignment explanation
Indices: 46606857--46606895 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
46606847 CTCTTTTTGC
46606857 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATT-TCTTTT
*
46606875 TCTTTTTTGATTTCTTTT
1 TC-TTTTTCATTTCTTTT
46606893 TCT
1 TCT
46606896 GTCTTCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTTCATTTCTTTT
Found at i:46609837 original size:25 final size:23
Alignment explanation
Indices: 46609782--46609834 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
46609772 TAATATTTGT
*
46609782 TTTTAATATGTCTAGCTACAGCA
1 TTTTAATATGTCTAGCTACAACA
46609805 TTTTAATATGTCTTTAGCTA-AACA
1 TTTTAATATGTC--TAGCTACAACA
46609829 TTTTAA
1 TTTTAA
46609835 ATACACGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 12 0.44
24 9 0.33
25 6 0.22
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.45
Consensus pattern (23 bp):
TTTTAATATGTCTAGCTACAACA
Found at i:46611151 original size:14 final size:13
Alignment explanation
Indices: 46611132--46611177 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
46611122 GTAAGTGTTT
*
46611132 AAAAAAATTTGAA
1 AAAAAAAATTGAA
46611145 AAAAAAAATTGAA
1 AAAAAAAATTGAA
*
46611158 AAAAAGAAATTCAA
1 AAAAA-AAATTGAA
46611172 AAAAAA
1 AAAAAA
46611178 TCCCAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 18 0.60
14 12 0.40
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (13 bp):
AAAAAAAATTGAA
Found at i:46614336 original size:21 final size:21
Alignment explanation
Indices: 46614310--46614362 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
46614300 ATTGTAATTG
*
46614310 AAAAAAAAAGGAAATT-ACGAA
1 AAAAAAAAAGAAAATTGA-GAA
46614331 AAAAAAGAAA-AAAATTGAGAA
1 AAAAAA-AAAGAAAATTGAGAA
*
46614352 TAAAAAAAAGA
1 AAAAAAAAAGA
46614363 GTATGAAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
20 3 0.11
21 20 0.74
22 4 0.15
ACGTcount: A:0.75, C:0.02, G:0.13, T:0.09
Consensus pattern (21 bp):
AAAAAAAAAGAAAATTGAGAA
Found at i:46614436 original size:46 final size:46
Alignment explanation
Indices: 46614337--46614435 Score: 164
Period size: 45 Copynumber: 2.2 Consensus size: 46
46614327 CGAAAAAAAA
* *
46614337 GAAAAAAATTGAGAATAAAAAAAAGAGTATGAAGTAAAAAAAATTC
1 GAAAAAAATTGAGAATAAAAAAAAGAGCACGAAGTAAAAAAAATTC
*
46614383 GAAAAAAATTGAGAAT-AAAAAAAGAGCACGAAGTAAAAAAAATTT
1 GAAAAAAATTGAGAATAAAAAAAAGAGCACGAAGTAAAAAAAATTC
46614428 GAAAAAAA
1 GAAAAAAA
46614436 AGTGAAGTGT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
45 34 0.68
46 16 0.32
ACGTcount: A:0.67, C:0.03, G:0.15, T:0.15
Consensus pattern (46 bp):
GAAAAAAATTGAGAATAAAAAAAAGAGCACGAAGTAAAAAAAATTC
Found at i:46615363 original size:12 final size:12
Alignment explanation
Indices: 46615334--46615373 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
46615324 AAACAGCATG
46615334 TGAAAAAGAAAA
1 TGAAAAAGAAAA
** *
46615346 ACAAAAAGAAAT
1 TGAAAAAGAAAA
46615358 TGAAAAAGAAAA
1 TGAAAAAGAAAA
46615370 TGAA
1 TGAA
46615374 CATGAACATG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.72, C:0.03, G:0.15, T:0.10
Consensus pattern (12 bp):
TGAAAAAGAAAA
Found at i:46615455 original size:33 final size:32
Alignment explanation
Indices: 46615408--46615469 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
46615398 CAATAAATTG
*
46615408 AAAAATAAAATGAGAGTGAGATTGAGAAAAAGA
1 AAAAAGAAAATGAGAGTGAGATTGA-AAAAAGA
* *
46615441 AAAAAGAAATTGAGATTGAGATTGAAAAA
1 AAAAAGAAAATGAGAGTGAGATTGAAAAA
46615470 GGATGTGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 4 0.15
33 22 0.85
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.18
Consensus pattern (32 bp):
AAAAAGAAAATGAGAGTGAGATTGAAAAAAGA
Found at i:46616758 original size:30 final size:30
Alignment explanation
Indices: 46616719--46616806 Score: 81
Period size: 30 Copynumber: 2.9 Consensus size: 30
46616709 AATTCAAAAA
* *
46616719 AAAATAAAAAAAAAGTGAAAAAAAA-TCGAGC
1 AAAA-AAAAAAAAAGTAAAAAAAAAGT-AAGC
*
46616750 AAAAAAAAAGAAAG-AAAAAAAAAGGTAAGC
1 AAAAAAAAAAAAAGTAAAAAAAAA-GTAAGC
**
46616780 AAAAAAAAATCAAGTTAAAAAAAAAGT
1 AAAAAAAAAAAAAG-TAAAAAAAAAGT
46616807 GAAAAGTCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
29 8 0.17
30 24 0.50
31 7 0.15
32 9 0.19
ACGTcount: A:0.74, C:0.05, G:0.12, T:0.09
Consensus pattern (30 bp):
AAAAAAAAAAAAAGTAAAAAAAAAGTAAGC
Found at i:46616768 original size:15 final size:16
Alignment explanation
Indices: 46616750--46616788 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
46616740 AAAATCGAGC
46616750 AAAAAAAAAGAAAG-A
1 AAAAAAAAAGAAAGCA
* *
46616765 AAAAAAAAGGTAAGCA
1 AAAAAAAAAGAAAGCA
46616781 AAAAAAAA
1 AAAAAAAA
46616789 TCAAGTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (16 bp):
AAAAAAAAAGAAAGCA
Found at i:46617680 original size:12 final size:12
Alignment explanation
Indices: 46617651--46617690 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
46617641 AAACAGCATG
46617651 TGAAAAAGAAAA
1 TGAAAAAGAAAA
** *
46617663 ACAAAAAGAAAT
1 TGAAAAAGAAAA
46617675 TGAAAAAGAAAA
1 TGAAAAAGAAAA
46617687 TGAA
1 TGAA
46617691 CATGAACATG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.72, C:0.03, G:0.15, T:0.10
Consensus pattern (12 bp):
TGAAAAAGAAAA
Found at i:46617772 original size:33 final size:32
Alignment explanation
Indices: 46617725--46617786 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
46617715 CAATAAATTG
*
46617725 AAAAATAAAATGAGAGTGAGATTGAGAAAAAGA
1 AAAAAGAAAATGAGAGTGAGATTGA-AAAAAGA
* *
46617758 AAAAAGAAATTGAGATTGAGATTGAAAAA
1 AAAAAGAAAATGAGAGTGAGATTGAAAAA
46617787 GGATGTGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 4 0.15
33 22 0.85
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.18
Consensus pattern (32 bp):
AAAAAGAAAATGAGAGTGAGATTGAAAAAAGA
Done.