Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 151 of 153
Found at i:47383742 original size:51 final size:51
Alignment explanation
Indices: 47383657--47383854 Score: 260
Period size: 51 Copynumber: 3.9 Consensus size: 51
47383647 TCAGTGATAC
* *
47383657 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTTTT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACTTTT
* * * *
47383708 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGA--AGCTATT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCATCA-CTTTT
* * *
47383759 CGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-TTCT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTTTT
47383810 -GGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCA
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCA
47383855 GTTTCACCTT
Statistics
Matches: 127, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
49 4 0.03
50 41 0.32
51 79 0.62
52 2 0.02
53 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (51 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACATGTGACCATCACTTTT
Found at i:47383794 original size:26 final size:26
Alignment explanation
Indices: 47383762--47383844 Score: 66
Period size: 26 Copynumber: 3.3 Consensus size: 26
47383752 AGCTATTCGG
47383762 TACACATAGTAGCCTGCACATAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
* ** **
47383788 TACACAT-G-CGACCT--ATCATTCTGG
1 TACACATAGTAG-CCTGCA-CATAGTAC
*
47383812 TACACGTAGTAGCCTGCACATAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
47383838 TACACAT
1 TACACAT
47383845 GTGACCATCA
Statistics
Matches: 39, Mismatches: 12, Indels: 12
0.62 0.19 0.19
Matches are distributed among these distances:
23 1 0.03
24 11 0.28
25 8 0.21
26 18 0.46
27 1 0.03
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACATAGTAC
Found at i:47383869 original size:101 final size:102
Alignment explanation
Indices: 47383660--47383882 Score: 285
Period size: 101 Copynumber: 2.2 Consensus size: 102
47383650 GTGATACCGG
* *
47383660 TTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTTTTCGATACACGTAGTAGCC
1 TTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTTCTCGATACACGTAGTAGCC
* **
47383725 TGCACATAGTACTACACACGTGATCGAAGCTATTCGG
66 TGCACATAGTACTACACACGTGATCCAAGCTATTCCC
* *
47383762 TACACATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-TTCT-GGTACACGTAGTAGC
1 TTCACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTTCTCGATACACGTAGTAGC
*
47383825 CTGCACATAGTACTACACATGTGA-CCATCAG-T-TTCACC
65 CTGCACATAGTACTACACACGTGATCCA--AGCTATTC-CC
* *
47383863 TTCACATAGTGGCCTTCACA
1 TTCACATAGTAGCCTGCACA
47383883 CAGTCCGTGC
Statistics
Matches: 106, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
100 5 0.05
101 55 0.52
102 42 0.40
103 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (102 bp):
TTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTTCTCGATACACGTAGTAGCC
TGCACATAGTACTACACACGTGATCCAAGCTATTCCC
Found at i:47388054 original size:297 final size:297
Alignment explanation
Indices: 47387520--47388114 Score: 1190
Period size: 297 Copynumber: 2.0 Consensus size: 297
47387510 TTTTAATTTC
47387520 TAGGTGAAAAGGGTAAATTTTTGGAGAAAGGACCAAATTGTAAAGAAAGCAAAACTTTCTTTCTT
1 TAGGTGAAAAGGGTAAATTTTTGGAGAAAGGACCAAATTGTAAAGAAAGCAAAACTTTCTTTCTT
47387585 TCTCTCTTCTCCTCGCGTTGGATGCATGGAAGATGATGGGTTGGTGGTTTTTCATCTTTCTTTCC
66 TCTCTCTTCTCCTCGCGTTGGATGCATGGAAGATGATGGGTTGGTGGTTTTTCATCTTTCTTTCC
47387650 ACATATATATATACTAAATAAATTAATAATAAAATAATAAAAATATCATTTAAAAATTAAATTAA
131 ACATATATATATACTAAATAAATTAATAATAAAATAATAAAAATATCATTTAAAAATTAAATTAA
47387715 AATATTAATAAACTAATATTTATTTAATTAATTAATCTAAAATATCACTAACATCATCATTGCCA
196 AATATTAATAAACTAATATTTATTTAATTAATTAATCTAAAATATCACTAACATCATCATTGCCA
47387780 TCTAGATTTCTCTCTCTTCTAATTGGCCATTTTGCCG
261 TCTAGATTTCTCTCTCTTCTAATTGGCCATTTTGCCG
47387817 TAGGTGAAAAGGGTAAATTTTTGGAGAAAGGACCAAATTGTAAAGAAAGCAAAACTTTCTTTCTT
1 TAGGTGAAAAGGGTAAATTTTTGGAGAAAGGACCAAATTGTAAAGAAAGCAAAACTTTCTTTCTT
47387882 TCTCTCTTCTCCTCGCGTTGGATGCATGGAAGATGATGGGTTGGTGGTTTTTCATCTTTCTTTCC
66 TCTCTCTTCTCCTCGCGTTGGATGCATGGAAGATGATGGGTTGGTGGTTTTTCATCTTTCTTTCC
47387947 ACATATATATATACTAAATAAATTAATAATAAAATAATAAAAATATCATTTAAAAATTAAATTAA
131 ACATATATATATACTAAATAAATTAATAATAAAATAATAAAAATATCATTTAAAAATTAAATTAA
47388012 AATATTAATAAACTAATATTTATTTAATTAATTAATCTAAAATATCACTAACATCATCATTGCCA
196 AATATTAATAAACTAATATTTATTTAATTAATTAATCTAAAATATCACTAACATCATCATTGCCA
47388077 TCTAGATTTCTCTCTCTTCTAATTGGCCATTTTGCCG
261 TCTAGATTTCTCTCTCTTCTAATTGGCCATTTTGCCG
47388114 T
1 T
47388115 TTATGTTCTT
Statistics
Matches: 298, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
297 298 1.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (297 bp):
TAGGTGAAAAGGGTAAATTTTTGGAGAAAGGACCAAATTGTAAAGAAAGCAAAACTTTCTTTCTT
TCTCTCTTCTCCTCGCGTTGGATGCATGGAAGATGATGGGTTGGTGGTTTTTCATCTTTCTTTCC
ACATATATATATACTAAATAAATTAATAATAAAATAATAAAAATATCATTTAAAAATTAAATTAA
AATATTAATAAACTAATATTTATTTAATTAATTAATCTAAAATATCACTAACATCATCATTGCCA
TCTAGATTTCTCTCTCTTCTAATTGGCCATTTTGCCG
Found at i:47393768 original size:23 final size:23
Alignment explanation
Indices: 47393732--47393792 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 23
47393722 TTTTATACAT
**
47393732 CAATTTGGATAGCATAAAAACAA
1 CAATTTGGGCAGCATAAAAACAA
* *
47393755 CAATTTGGGCAGCATATATACAA
1 CAATTTGGGCAGCATAAAAACAA
* *
47393778 CAGTTTGAGCAGCAT
1 CAATTTGGGCAGCAT
47393793 TTTTACACTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (23 bp):
CAATTTGGGCAGCATAAAAACAA
Found at i:47393799 original size:23 final size:23
Alignment explanation
Indices: 47393725--47393792 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 23
47393715 GGAAAACTTT
* *
47393725 TATACATCAATTTG-GATAGCATA
1 TATACAACAATTTGAG-CAGCATA
* * *
47393748 AAAACAACAATTTGGGCAGCATA
1 TATACAACAATTTGAGCAGCATA
*
47393771 TATACAACAGTTTGAGCAGCAT
1 TATACAACAATTTGAGCAGCAT
47393793 TTTTACACTA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
23 35 0.97
24 1 0.03
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.26
Consensus pattern (23 bp):
TATACAACAATTTGAGCAGCATA
Found at i:47393839 original size:47 final size:47
Alignment explanation
Indices: 47393802--47394020 Score: 348
Period size: 47 Copynumber: 4.7 Consensus size: 47
47393792 TTTTTACACT
* * * *
47393802 AAAACTGGATAGCATATATGCAACAAATTGGGTAGCATTTAAGCATC
1 AAAATTGGACAGCATATATGTAACAAATTGGGCAGCATTTAAGCATC
* *
47393849 AAAATTGGACAGCATATATGTAACAAATTAGGCAGCATTTAAGTATC
1 AAAATTGGACAGCATATATGTAACAAATTGGGCAGCATTTAAGCATC
*
47393896 AAAATTGGATAGCATATATGTAACAAATTGGGCAGCATTTAAGCATC
1 AAAATTGGACAGCATATATGTAACAAATTGGGCAGCATTTAAGCATC
*
47393943 AAAATTGGACAGCATATATGTAACAAATTGGGCGGCATTTAAGCATC
1 AAAATTGGACAGCATATATGTAACAAATTGGGCAGCATTTAAGCATC
* *
47393990 AAAATTGAACTGCATATATGTAACAAATTGG
1 AAAATTGGACAGCATATATGTAACAAATTGG
47394021 TTCAACTCAT
Statistics
Matches: 159, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 159 1.00
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (47 bp):
AAAATTGGACAGCATATATGTAACAAATTGGGCAGCATTTAAGCATC
Found at i:47393862 original size:24 final size:24
Alignment explanation
Indices: 47393826--47393996 Score: 143
Period size: 24 Copynumber: 7.2 Consensus size: 24
47393816 TATATGCAAC
** *
47393826 AAATTGGGTAGCATTTAAGCATCA
1 AAATTGGACAGCATTTAAGTATCA
* * *
47393850 AAATTGGACAGCATATATGTAAC-
1 AAATTGGACAGCATTTAAGTATCA
47393873 AAATTAGG-CAGCATTTAAGTATCA
1 AAATT-GGACAGCATTTAAGTATCA
* * * *
47393897 AAATTGGATAGCATATATGTAAC-
1 AAATTGGACAGCATTTAAGTATCA
* *
47393920 AAATTGGGCAGCATTTAAGCATCA
1 AAATTGGACAGCATTTAAGTATCA
* * *
47393944 AAATTGGACAGCATATATGTAAC-
1 AAATTGGACAGCATTTAAGTATCA
* * *
47393967 AAATTGGGCGGCATTTAAGCATCA
1 AAATTGGACAGCATTTAAGTATCA
47393991 AAATTG
1 AAATTG
47393997 AACTGCATAT
Statistics
Matches: 112, Mismatches: 30, Indels: 10
0.74 0.20 0.07
Matches are distributed among these distances:
23 53 0.47
24 59 0.53
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.27
Consensus pattern (24 bp):
AAATTGGACAGCATTTAAGTATCA
Found at i:47394016 original size:24 final size:24
Alignment explanation
Indices: 47393802--47394020 Score: 153
Period size: 23 Copynumber: 9.3 Consensus size: 24
47393792 TTTTTACACT
* * *
47393802 AAAACTGGATAGCATATATGCAAC
1 AAAATTGGACAGCATATATGTAAC
** * * * *
47393826 -AAATTGGGTAGCATTTAAGCATC
1 AAAATTGGACAGCATATATGTAAC
47393849 AAAATTGGACAGCATATATGTAAC
1 AAAATTGGACAGCATATATGTAAC
* * *
47393873 -AAATTAGG-CAGCATTTAAGTATC
1 AAAATT-GGACAGCATATATGTAAC
*
47393896 AAAATTGGATAGCATATATGTAAC
1 AAAATTGGACAGCATATATGTAAC
* * * * *
47393920 -AAATTGGGCAGCATTTAAGCATC
1 AAAATTGGACAGCATATATGTAAC
47393943 AAAATTGGACAGCATATATGTAAC
1 AAAATTGGACAGCATATATGTAAC
* * * * * *
47393967 -AAATTGGGCGGCATTTAAGCATC
1 AAAATTGGACAGCATATATGTAAC
* *
47393990 AAAATTGAACTGCATATATGTAAC
1 AAAATTGGACAGCATATATGTAAC
47394014 -AAATTGG
1 AAAATTGG
47394021 TTCAACTCAT
Statistics
Matches: 146, Mismatches: 43, Indels: 13
0.72 0.21 0.06
Matches are distributed among these distances:
23 77 0.53
24 69 0.47
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (24 bp):
AAAATTGGACAGCATATATGTAAC
Found at i:47394960 original size:43 final size:42
Alignment explanation
Indices: 47394863--47394984 Score: 124
Period size: 43 Copynumber: 2.9 Consensus size: 42
47394853 CTCGTACAAA
* * * *
47394863 GCCAACGTCCTAGACGTGGTCTTACATGTAATCACGTATCGAT
1 GCCAACGTCCCAGACGTGGTCTTACACGTAAACAC-AATCGAT
*
47394906 GCC-ACTATCCCAGACAG-GGTCTTACACGTAAACACAAGTCGAT
1 GCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAACACAA-TCGAT
*
47394949 GCCAACGTCCCAGATGTGGTCTTACACG-ATAACACA
1 GCCAACGTCCCAGACGTGGTCTTACACGTA-AACACA
47394985 TCTCAAAAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
42 5 0.08
43 58 0.88
44 3 0.05
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (42 bp):
GCCAACGTCCCAGACGTGGTCTTACACGTAAACACAATCGAT
Found at i:47401813 original size:23 final size:23
Alignment explanation
Indices: 47401769--47401827 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
47401759 GACAGCTTTT
* * *
47401769 ATACATCAATTTGGATAGCATAA
1 ATACAACAATTTGGACAACATAA
* *
47401792 ATACAACAATTTGGGCAACATAT
1 ATACAACAATTTGGACAACATAA
*
47401815 ATACAACAGTTTG
1 ATACAACAATTTG
47401828 AGCAGCATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (23 bp):
ATACAACAATTTGGACAACATAA
Found at i:47401883 original size:23 final size:23
Alignment explanation
Indices: 47401850--47402039 Score: 155
Period size: 23 Copynumber: 8.1 Consensus size: 23
47401840 ACACTAAAAC
*
47401850 TGGACAACATATATGCAACAAAT
1 TGGACAGCATATATGCAACAAAT
* *
47401873 TGGATAGCATATATGTAACAAAT
1 TGGACAGCATATATGCAACAAAT
* * * *
47401896 TGGGCAGCATTTAAGCATCAAAAT
1 TGGACAGCATATATGCAAC-AAAT
* *
47401920 TGGATAGCATATATGTAACAAAT
1 TGGACAGCATATATGCAACAAAT
* * * *
47401943 TGGGCAGCATTTAAGCATCAAAAT
1 TGGACAGCATATATGCAAC-AAAT
*
47401967 TGGACAGCATATATGTAACAAAT
1 TGGACAGCATATATGCAACAAAT
* * * * *
47401990 TGGGCGGCATTTAAGCATCAAAAT
1 TGGACAGCATATATGCAAC-AAAT
* * *
47402014 TGAACTGCATATATGTAACAAAT
1 TGGACAGCATATATGCAACAAAT
47402037 TGG
1 TGG
47402040 TTCAACTCAT
Statistics
Matches: 124, Mismatches: 40, Indels: 6
0.73 0.24 0.04
Matches are distributed among these distances:
23 73 0.59
24 51 0.41
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.27
Consensus pattern (23 bp):
TGGACAGCATATATGCAACAAAT
Found at i:47401923 original size:47 final size:47
Alignment explanation
Indices: 47401869--47402039 Score: 299
Period size: 47 Copynumber: 3.6 Consensus size: 47
47401859 TATATGCAAC
47401869 AAATTGGATAGCATATATGTAACAAATTGGGCAGCATTTAAGCATCA
1 AAATTGGATAGCATATATGTAACAAATTGGGCAGCATTTAAGCATCA
47401916 AAATTGGATAGCATATATGTAACAAATTGGGCAGCATTTAAGCATCA
1 AAATTGGATAGCATATATGTAACAAATTGGGCAGCATTTAAGCATCA
* *
47401963 AAATTGGACAGCATATATGTAACAAATTGGGCGGCATTTAAGCATCA
1 AAATTGGATAGCATATATGTAACAAATTGGGCAGCATTTAAGCATCA
*
47402010 AAATTGAACT-GCATATATGTAACAAATTGG
1 AAATTGGA-TAGCATATATGTAACAAATTGG
47402040 TTCAACTCAT
Statistics
Matches: 119, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
47 119 1.00
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.27
Consensus pattern (47 bp):
AAATTGGATAGCATATATGTAACAAATTGGGCAGCATTTAAGCATCA
Found at i:47402023 original size:24 final size:24
Alignment explanation
Indices: 47401892--47402015 Score: 117
Period size: 24 Copynumber: 5.2 Consensus size: 24
47401882 TATATGTAAC
*
47401892 AAATTGGGCAGCATTTAAGCATCA
1 AAATTGGACAGCATTTAAGCATCA
* * * * *
47401916 AAATTGGATAGCATATATGTAAC-
1 AAATTGGACAGCATTTAAGCATCA
*
47401939 AAATTGGGCAGCATTTAAGCATCA
1 AAATTGGACAGCATTTAAGCATCA
* * * *
47401963 AAATTGGACAGCATATATGTAAC-
1 AAATTGGACAGCATTTAAGCATCA
* *
47401986 AAATTGGGCGGCATTTAAGCATCA
1 AAATTGGACAGCATTTAAGCATCA
47402010 AAATTG
1 AAATTG
47402016 AACTGCATAT
Statistics
Matches: 75, Mismatches: 23, Indels: 4
0.74 0.23 0.04
Matches are distributed among these distances:
23 34 0.45
24 41 0.55
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.27
Consensus pattern (24 bp):
AAATTGGACAGCATTTAAGCATCA
Found at i:47402947 original size:43 final size:42
Alignment explanation
Indices: 47402881--47403004 Score: 128
Period size: 43 Copynumber: 2.9 Consensus size: 42
47402871 AACTCGTACA
* * * *
47402881 ATGCCAACGTCCTAGAC-GTGGTCTTACATGTAATCAC-GTATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGTAAACACAGTA--G
*
47402924 ATGCCACTGTCCCAGACAGGGTCTTACACGTAAACACAAGTAG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTAAACAC-AGTAG
*
47402967 ATGCCAATGTCCCAGACATGGTCTTACACG-ATAACACA
1 ATGCCAATGTCCCAGACAGGGTCTTACACGTA-AACACA
47403005 TCTCAGAAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 9
0.81 0.08 0.10
Matches are distributed among these distances:
42 2 0.03
43 64 0.91
44 1 0.01
45 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGTAAACACAGTAG
Found at i:47403161 original size:43 final size:43
Alignment explanation
Indices: 47403114--47403195 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
47403104 ATCACGTATC
*
47403114 GATGCCACTGTCCCAGACAGGGTCTTACACG-TAAACACAAGTA
1 GATGCCAATGTCCCAGACAGGGTCTTACACGAT-AACACAAGTA
*
47403157 GATGCCAATGTCCCAGACATGGTCTTACACGATAACACA
1 GATGCCAATGTCCCAGACAGGGTCTTACACGATAACACA
47403196 TCTCAGAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.20
Consensus pattern (43 bp):
GATGCCAATGTCCCAGACAGGGTCTTACACGATAACACAAGTA
Found at i:47403209 original size:191 final size:191
Alignment explanation
Indices: 47402885--47403266 Score: 764
Period size: 191 Copynumber: 2.0 Consensus size: 191
47402875 CGTACAATGC
47402885 CAACGTCCTAGACGTGGTCTTACATGTAATCACGTATCGATGCCACTGTCCCAGACAGGGTCTTA
1 CAACGTCCTAGACGTGGTCTTACATGTAATCACGTATCGATGCCACTGTCCCAGACAGGGTCTTA
47402950 CACGTAAACACAAGTAGATGCCAATGTCCCAGACATGGTCTTACACGATAACACATCTCAGAAAT
66 CACGTAAACACAAGTAGATGCCAATGTCCCAGACATGGTCTTACACGATAACACATCTCAGAAAT
47403015 CTTATGTCATGACATATGTATCCTAACTATTCCTAAGGTTCATACGGGGCTTAGGACATCG
131 CTTATGTCATGACATATGTATCCTAACTATTCCTAAGGTTCATACGGGGCTTAGGACATCG
47403076 CAACGTCCTAGACGTGGTCTTACATGTAATCACGTATCGATGCCACTGTCCCAGACAGGGTCTTA
1 CAACGTCCTAGACGTGGTCTTACATGTAATCACGTATCGATGCCACTGTCCCAGACAGGGTCTTA
47403141 CACGTAAACACAAGTAGATGCCAATGTCCCAGACATGGTCTTACACGATAACACATCTCAGAAAT
66 CACGTAAACACAAGTAGATGCCAATGTCCCAGACATGGTCTTACACGATAACACATCTCAGAAAT
47403206 CTTATGTCATGACATATGTATCCTAACTATTCCTAAGGTTCATACGGGGCTTAGGACATCG
131 CTTATGTCATGACATATGTATCCTAACTATTCCTAAGGTTCATACGGGGCTTAGGACATCG
47403267 GATCTCGTTC
Statistics
Matches: 191, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
191 191 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (191 bp):
CAACGTCCTAGACGTGGTCTTACATGTAATCACGTATCGATGCCACTGTCCCAGACAGGGTCTTA
CACGTAAACACAAGTAGATGCCAATGTCCCAGACATGGTCTTACACGATAACACATCTCAGAAAT
CTTATGTCATGACATATGTATCCTAACTATTCCTAAGGTTCATACGGGGCTTAGGACATCG
Found at i:47411064 original size:23 final size:23
Alignment explanation
Indices: 47411033--47411079 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
47411023 CATGAGTTGG
*
47411033 ATAATTATTTTCGTGTGGTTTCA
1 ATAACTATTTTCGTGTGGTTTCA
47411056 ATAACTATTTTCGTGTGGTTTCA
1 ATAACTATTTTCGTGTGGTTTCA
47411079 A
1 A
47411080 CTATCAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.23, C:0.11, G:0.17, T:0.49
Consensus pattern (23 bp):
ATAACTATTTTCGTGTGGTTTCA
Found at i:47412468 original size:15 final size:15
Alignment explanation
Indices: 47412450--47412502 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
47412440 GCATAAAATG
47412450 AAATTTTTATTGTCT
1 AAATTTTTATTGTCT
* **
47412465 AAATTAATATATTGAAT
1 AAATT--TTTATTGTCT
47412482 GAAATTTTTATTGTCT
1 -AAATTTTTATTGTCT
47412498 AAATT
1 AAATT
47412503 AATATATTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
15 10 0.34
16 7 0.24
17 7 0.24
18 5 0.17
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.51
Consensus pattern (15 bp):
AAATTTTTATTGTCT
Found at i:47412485 original size:33 final size:33
Alignment explanation
Indices: 47412446--47412520 Score: 150
Period size: 33 Copynumber: 2.3 Consensus size: 33
47412436 AATTGCATAA
47412446 AATGAAATTTTTATTGTCTAAATTAATATATTG
1 AATGAAATTTTTATTGTCTAAATTAATATATTG
47412479 AATGAAATTTTTATTGTCTAAATTAATATATTG
1 AATGAAATTTTTATTGTCTAAATTAATATATTG
47412512 AATGAAATT
1 AATGAAATT
47412521 ATTAATTGAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (33 bp):
AATGAAATTTTTATTGTCTAAATTAATATATTG
Found at i:47412521 original size:18 final size:18
Alignment explanation
Indices: 47412465--47412521 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
47412455 TTTATTGTCT
47412465 AAATTAATATATTGAATG
1 AAATTAATATATTGAATG
* **
47412483 AAATT--TTTATTGTCT-
1 AAATTAATATATTGAATG
47412498 AAATTAATATATTGAATG
1 AAATTAATATATTGAATG
47412516 AAATTA
1 AAATTA
47412522 TTAATTGAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
15 5 0.17
16 7 0.23
17 7 0.23
18 11 0.37
ACGTcount: A:0.46, C:0.02, G:0.09, T:0.44
Consensus pattern (18 bp):
AAATTAATATATTGAATG
Found at i:47417181 original size:50 final size:50
Alignment explanation
Indices: 47417070--47417361 Score: 433
Period size: 50 Copynumber: 5.8 Consensus size: 50
47417060 GATAATAACA
* * * ** *
47417070 TGCCAAAGCCATGTACCAGACATGGTCTTAGATGGGATGTACTCATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGG
** * **
47417121 TGCCCTTGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
47417171 TGCCAATGCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
47417221 TGCCAATACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
47417271 TGCCAATG-CATATCCCAGACATGGTCTTACATGGGACCTCTCATCCCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
47417320 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
47417362 TTACCCAAAT
Statistics
Matches: 217, Mismatches: 23, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
49 47 0.22
50 140 0.65
51 30 0.14
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:47417321 original size:149 final size:151
Alignment explanation
Indices: 47417070--47417361 Score: 437
Period size: 149 Copynumber: 1.9 Consensus size: 151
47417060 GATAATAACA
* ** * ** *
47417070 TGCCAAAGCCATGTACCAGACATGGTCTTAGATGGGATGTACTCATGTCGGTGCCCTTGCCATGT
1 TGCCAAAGCCATGTACCAGACATGGTCTTACATGGGACCTACTCATCTCGGTGCCAATGCCATAT
* *
47417135 CCCAAACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTT
66 CCCAAACATGGTCTTACAGGGGACCTCTCATCCCGGTGCCAATGCCATGTCCCAGACATGGTCTT
47417200 ACATAGGACCTCTCATCTCGG
131 ACATAGGACCTCTCATCTCGG
*
47417221 TGCCAATA-CCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGGTGCCAATG-CATA
1 TGCCAA-AGCCATGTACCAGACATGGTCTTACATGGGACCTACTCATCTCGGTGCCAATGCCATA
* *
47417283 TCCCAGACATGGTCTTACATGGGACCTCTCATCCCGGTGCCAATGCCATGTCCCAGACATGGTCT
65 TCCCAAACATGGTCTTACAGGGGACCTCTCATCCCGGTGCCAATGCCATGTCCCAGACATGGTCT
*
47417348 TACATGGGACCTCT
130 TACATAGGACCTCT
47417362 TTACCCAAAT
Statistics
Matches: 127, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
149 77 0.61
150 15 0.12
151 34 0.27
152 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (151 bp):
TGCCAAAGCCATGTACCAGACATGGTCTTACATGGGACCTACTCATCTCGGTGCCAATGCCATAT
CCCAAACATGGTCTTACAGGGGACCTCTCATCCCGGTGCCAATGCCATGTCCCAGACATGGTCTT
ACATAGGACCTCTCATCTCGG
Found at i:47417333 original size:99 final size:100
Alignment explanation
Indices: 47417070--47417361 Score: 424
Period size: 99 Copynumber: 2.9 Consensus size: 100
47417060 GATAATAACA
* * * * ** * **
47417070 TGCCAAAGCCATGTACCAGACATGGTCTTAGATGGGATGTACTCATGTCGGTGCCCTTGCCATGT
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCT-CTCATCTCGGTGCCAATGCCATGT
* **
47417135 CCCAAACATGGTCTTACGGGGGACCTCTCATCTCGG
65 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
47417171 TGCCAATGCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATCTCGGTGCCAATACCATGTC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
47417236 CCAGACATGGTCTTACATGGGACCTCTCATCTCGG
66 CCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
47417271 TGCCAATG-CATATCCCAGACATGGTCTTACATGGGACCTCTCATCCCGGTGCCAATGCCATGTC
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
47417335 CCAGACATGGTCTTACATGGGACCTCT
66 CCAGACATGGTCTTACATGGGACCTCT
47417362 TTACCCAAAT
Statistics
Matches: 174, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
99 79 0.45
100 61 0.35
101 34 0.20
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (100 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
CCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:47417477 original size:13 final size:13
Alignment explanation
Indices: 47417456--47417485 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
47417446 GCTTGGATCA
47417456 TCATCAAATAAAT
1 TCATCAAATAAAT
*
47417469 TCATGAAATAAAT
1 TCATCAAATAAAT
47417482 TCAT
1 TCAT
47417486 AGTTGCTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.33
Consensus pattern (13 bp):
TCATCAAATAAAT
Found at i:47424806 original size:50 final size:50
Alignment explanation
Indices: 47424697--47424880 Score: 235
Period size: 50 Copynumber: 3.7 Consensus size: 50
47424687 ACATGCCAAA
** * * *
47424697 GCCATGTCCCAGACATGGTCTTACATGGGATGTACTCATGTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCT-CTCATATCGGTGTCAAT
* **
47424748 GCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATATCGGTGTCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGTCAAT
* *
47424798 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGT-TCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGT-CAAT
* *
47424848 TCCATCTCCCAGACATGGTCTTACATGGGACCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCT
47424881 TTTTACCCAA
Statistics
Matches: 116, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
49 1 0.01
50 87 0.75
51 28 0.24
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGTCAAT
Found at i:47424878 original size:100 final size:101
Alignment explanation
Indices: 47424697--47424880 Score: 262
Period size: 100 Copynumber: 1.8 Consensus size: 101
47424687 ACATGCCAAA
* ** * * * *
47424697 GCCATGTCCCAGACATGGTCTTACATGGGATGTACTCATGTCGGTGCCCATGCCATGTCCTAGAC
1 GCCATGTCCCAGACATGGTCTTACATGAGACCTACTCATCTCGGTGCCAATGCCATCTCCCAGAC
*
47424762 ATGGTCTTACGGGGGACCTCTCATATCGGTGTCAAT
66 ATGGTCTTACAGGGGACCTCTCATATCGGTGTCAAT
* *
47424798 GCCATGTCCCAGACATGGTCTTACATGAGACCT-CTCATCTCGGTTCCAATTCCATCTCCCAGAC
1 GCCATGTCCCAGACATGGTCTTACATGAGACCTACTCATCTCGGTGCCAATGCCATCTCCCAGAC
*
47424862 ATGGTCTTACATGGGACCT
66 ATGGTCTTACAGGGGACCT
47424881 TTTTACCCAA
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
100 42 0.58
101 30 0.42
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (101 bp):
GCCATGTCCCAGACATGGTCTTACATGAGACCTACTCATCTCGGTGCCAATGCCATCTCCCAGAC
ATGGTCTTACAGGGGACCTCTCATATCGGTGTCAAT
Found at i:47427045 original size:19 final size:20
Alignment explanation
Indices: 47426998--47427035 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
47426988 AACATTTTTG
47426998 ATTCAGCTCATTCGAGCTCA
1 ATTCAGCTCATTCGAGCTCA
47427018 ATTCAGCTCATT-GAGCTC
1 ATTCAGCTCATTCGAGCTC
47427036 GTATTAGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.32
Consensus pattern (20 bp):
ATTCAGCTCATTCGAGCTCA
Found at i:47439024 original size:25 final size:25
Alignment explanation
Indices: 47438961--47439016 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
47438951 TTACCGATTG
47438961 CAGCTCAT-GAGAGCTTACTGATTCT
1 CAGCTCATAG-GAGCTTACTGATTCT
*
47438986 TAGCTCATAGGAGCTTACTGATT-T
1 CAGCTCATAGGAGCTTACTGATTCT
47439010 ACAGCTC
1 -CAGCTC
47439017 GTATGAGCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 1 0.04
25 25 0.93
26 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (25 bp):
CAGCTCATAGGAGCTTACTGATTCT
Found at i:47451694 original size:52 final size:52
Alignment explanation
Indices: 47451637--47451740 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
47451627 AAGATGGTCC
47451637 AAAAATGTGTGTTAATTCATAATATAATTAATTTTAATTTAGTGTTAATTCA
1 AAAAATGTGTGTTAATTCATAATATAATTAATTTTAATTTAGTGTTAATTCA
47451689 AAAAATGTGTGTTAATTCATAATATAATTAATTTTAATTTAGTGTTAATTCA
1 AAAAATGTGTGTTAATTCATAATATAATTAATTTTAATTTAGTGTTAATTCA
47451741 TAATATAATT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (52 bp):
AAAAATGTGTGTTAATTCATAATATAATTAATTTTAATTTAGTGTTAATTCA
Found at i:47451721 original size:16 final size:16
Alignment explanation
Indices: 47451700--47451754 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
47451690 AAAATGTGTG
47451700 TTAATTCATAATATAA
1 TTAATTCATAATATAA
* * *
47451716 TTAATT-TTAATTTAGTG
1 TTAATTCATAATATA--A
47451733 TTAATTCATAATATAA
1 TTAATTCATAATATAA
47451749 TTAATT
1 TTAATT
47451755 TTAATTTATT
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
15 6 0.20
16 12 0.40
17 6 0.20
18 6 0.20
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (16 bp):
TTAATTCATAATATAA
Found at i:47451735 original size:33 final size:33
Alignment explanation
Indices: 47451697--47451762 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
47451687 CAAAAAATGT
47451697 GTGTTAATTCATAATATAATTAATTTTAATTTA
1 GTGTTAATTCATAATATAATTAATTTTAATTTA
47451730 GTGTTAATTCATAATATAATTAATTTTAATTTA
1 GTGTTAATTCATAATATAATTAATTTTAATTTA
47451763 TTCTCAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (33 bp):
GTGTTAATTCATAATATAATTAATTTTAATTTA
Found at i:47457601 original size:44 final size:42
Alignment explanation
Indices: 47457519--47457614 Score: 106
Period size: 44 Copynumber: 2.2 Consensus size: 42
47457509 TCCCAAACGT
*
47457519 GGTCTTACATGTAATCAAATGTCGATGCCACTATCCCAGACAA
1 GGTCTTACATGTAATCAAA-GTCGATGCAACTATCCCAGACAA
**
47457562 GGTCTTACATGTAAACCTCAAA-TCGATGCTAAC-ATCCCAGACGT
1 GGTCTTACATGT-AA--TCAAAGTCGATGC-AACTATCCCAGACAA
47457606 GGTCTTACA
1 GGTCTTACA
47457615 CAAATACTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
43 12 0.26
44 27 0.59
45 2 0.04
46 5 0.11
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAAGTCGATGCAACTATCCCAGACAA
Found at i:47459559 original size:27 final size:27
Alignment explanation
Indices: 47459528--47460030 Score: 431
Period size: 27 Copynumber: 18.6 Consensus size: 27
47459518 TAATGGGCCT
*
47459528 AAATTACCGAAATACCCCCGATGGGTA
1 AAATTACCGAAATACCCTCGATGGGTA
* *
47459555 AAATTACCTAAATACCCTCGATGAGTA
1 AAATTACCGAAATACCCTCGATGGGTA
** *
47459582 AAATTAATGAGATACCCTCGATGGGTA
1 AAATTACCGAAATACCCTCGATGGGTA
*
47459609 AAACTACCGAAATACCCTCGATGGGTA
1 AAATTACCGAAATACCCTCGATGGGTA
* * * *
47459636 AAATTATCAAAATACCGTCAATGGGTA
1 AAATTACCGAAATACCCTCGATGGGTA
* *
47459663 TAATTACCAAAATACCCTCGATGGGTA
1 AAATTACCGAAATACCCTCGATGGGTA
* *
47459690 AAATTACCAAAATACCCTCGATAGGTA
1 AAATTACCGAAATACCCTCGATGGGTA
* **
47459717 AAATTACTGAAATACCCTTAATGGGTA
1 AAATTACCGAAATACCCTCGATGGGTA
** *
47459744 AAATTATTGAAATACCCTCGATGGATA
1 AAATTACCGAAATACCCTCGATGGGTA
* *
47459771 AAATTATCGAAATACCCTTGATGGGTA
1 AAATTACCGAAATACCCTCGATGGGTA
* **
47459798 TAATTATTGAAATACCCTCGAAT-GGTA
1 AAATTACCGAAATACCCTCG-ATGGGTA
* * *
47459825 AAATGACCGAATTACCCTCGAAGGGTA
1 AAATTACCGAAATACCCTCGATGGGTA
* * * **
47459852 AAATGACTGAAATACCC-CTAAAAGGTA
1 AAATTACCGAAATACCCTC-GATGGGTA
* * *
47459879 AAATGACCAAAATACCC-CTATAGGGTA
1 AAATTACCGAAATACCCTCGAT-GGGTA
* * *
47459906 AAATGACC-AAATTACCCCCGAAGGGTA
1 AAATTACCGAAA-TACCCTCGATGGGTA
* * ** *
47459933 AAATGACC-AAATTACCATCGAAAGTTA
1 AAATTACCGAAA-TACCCTCGATGGGTA
* ** * *
47459960 AAATGACTAAAATACCCTCAAAGGGTA
1 AAATTACCGAAATACCCTCGATGGGTA
* * *
47459987 AAATTAACGAAATACCCCCGAAGGGTA
1 AAATTACCGAAATACCCTCGATGGGTA
* *
47460014 AAATAACCAAAATACCC
1 AAATTACCGAAATACCC
47460031 CTATAGGATA
Statistics
Matches: 396, Mismatches: 73, Indels: 14
0.82 0.15 0.03
Matches are distributed among these distances:
26 6 0.02
27 383 0.97
28 7 0.02
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATGGGTA
Found at i:47467991 original size:21 final size:22
Alignment explanation
Indices: 47467941--47467992 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
47467931 ATAATATTGC
* * *
47467941 TGAGAAGGAAGTTGTTACTAAA
1 TGAGAAAGAAGTTGCTACAAAA
*
47467963 GGAG-AAGAAGTTGCTA-AAAA
1 TGAGAAAGAAGTTGCTACAAAA
47467983 TGAGAAAGAA
1 TGAGAAAGAA
47467993 AGAGAAGAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
20 6 0.25
21 15 0.62
22 3 0.12
ACGTcount: A:0.48, C:0.04, G:0.29, T:0.19
Consensus pattern (22 bp):
TGAGAAAGAAGTTGCTACAAAA
Found at i:47468396 original size:17 final size:17
Alignment explanation
Indices: 47468374--47468410 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
47468364 GATAAATATA
* *
47468374 CATTGTCATTGCATTTT
1 CATTGTCAATACATTTT
47468391 CATTGTCAATACATTTT
1 CATTGTCAATACATTTT
47468408 CAT
1 CAT
47468411 GTTAGTGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.24, C:0.19, G:0.08, T:0.49
Consensus pattern (17 bp):
CATTGTCAATACATTTT
Found at i:47469223 original size:33 final size:33
Alignment explanation
Indices: 47469186--47469251 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
47469176 ACATGCAGTA
* *
47469186 ACAGTTTAGGCCTGAGCCTTAT-TCAGTAATAGT
1 ACAGTGTAGGCCTGAGCCTGATAT-AGTAATAGT
* *
47469219 ACAGTGTGGGCCTTAGCCTGATATAGTAATAGT
1 ACAGTGTAGGCCTGAGCCTGATATAGTAATAGT
47469252 GTCGGACTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (33 bp):
ACAGTGTAGGCCTGAGCCTGATATAGTAATAGT
Found at i:47469261 original size:28 final size:28
Alignment explanation
Indices: 47469221--47469331 Score: 150
Period size: 28 Copynumber: 4.0 Consensus size: 28
47469211 GTAATAGTAC
* *
47469221 AGTGTGGGCCTTAGCCTGATATAGTAAT
1 AGTGTGGGCCTTAGCCTAATACAGTAAT
* *
47469249 AGTGTCGGACTTAGCCTAATACAGTAAT
1 AGTGTGGGCCTTAGCCTAATACAGTAAT
* * *
47469277 AGTATGGGCCTTAGCCCAATACAGTAAC
1 AGTGTGGGCCTTAGCCTAATACAGTAAT
*
47469305 AGTGTGGGCCTTAGCCTAATATAGTAA
1 AGTGTGGGCCTTAGCCTAATACAGTAA
47469332 CCAGTATAGT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCTAATACAGTAAT
Found at i:47469545 original size:27 final size:29
Alignment explanation
Indices: 47469476--47469725 Score: 250
Period size: 27 Copynumber: 9.3 Consensus size: 29
47469466 GGGGTATAAC
* * *
47469476 AGTCATTTTACCCTAT-GGGGGTA-TCCG
1 AGTCATTTTACCCTTTCGAGGGTATTTCG
47469503 -GTCATTTTACCC-TTCGAGGGTATTTCG
1 AGTCATTTTACCCTTTCGAGGGTATTTCG
*
47469530 A-TCATTTTA-CCTTTCGAGGGTATTT-T
1 AGTCATTTTACCCTTTCGAGGGTATTTCG
*
47469556 AGTCATTTTACCCTTTAG-GGGTATTTC-
1 AGTCATTTTACCCTTTCGAGGGTATTTCG
* *
47469583 AATCATTTTACCC-TTCAAGGGTATTTCG
1 AGTCATTTTACCCTTTCGAGGGTATTTCG
*
47469611 A-TCATTTTA-CCTTTTGAGGGTATTTCG
1 AGTCATTTTACCCTTTCGAGGGTATTTCG
*
47469638 -GTCATTTTATCCTTT-GAGGGTATTTC-
1 AGTCATTTTACCCTTTCGAGGGTATTTCG
* * *
47469664 AGTCATTTTATCC-TTCGAGGGAATTT-T
1 AGTCATTTTACCCTTTCGAGGGTATTTCG
*
47469691 AGTTATTTTACCCTTT-GAGGGTATTTC-
1 AGTCATTTTACCCTTTCGAGGGTATTTCG
47469718 AGTCATTT
1 AGTCATTT
47469726 GCTCATAAAT
Statistics
Matches: 191, Mismatches: 15, Indels: 34
0.80 0.06 0.14
Matches are distributed among these distances:
25 1 0.01
26 27 0.14
27 149 0.78
28 14 0.07
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.44
Consensus pattern (29 bp):
AGTCATTTTACCCTTTCGAGGGTATTTCG
Found at i:47469616 original size:81 final size:79
Alignment explanation
Indices: 47469475--47469725 Score: 317
Period size: 81 Copynumber: 3.1 Consensus size: 79
47469465 AGGGGTATAA
* * *
47469475 CAGTCATTTTACCCTATGGGGGTA-TCCGGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTA
1 CAGTCATTTTACCCT-TTGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTA
47469539 CCTTTCGAGGGTATTT
65 CCTTT-GAGGGTATTT
* * *
47469555 TAGTCATTTTACCCTTTAGGGGTATTTCAATCATTTTACCCTTCAAGGGTATTTCGATCATTTTA
1 CAGTCATTTTACCCTTT-GGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTA
47469620 CCTTTTGAGGGTATTT
65 CC-TTTGAGGGTATTT
* * * * * *
47469636 CGGTCATTTTATCCTTTGAGGGTATTTCAGTCATTTTATCCTTCGAGGGAATTT-TAGTTATTTT
1 CAGTCATTTTACCCTTTG-GGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGA-TCATTTT
47469700 ACCCTTTGAGGGTATTT
64 A-CCTTTGAGGGTATTT
47469717 CAGTCATTT
1 CAGTCATTT
47469726 GCTCATAAAT
Statistics
Matches: 149, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
79 1 0.01
80 22 0.15
81 121 0.81
82 5 0.03
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.44
Consensus pattern (79 bp):
CAGTCATTTTACCCTTTGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTAC
CTTTGAGGGTATTT
Found at i:47474200 original size:22 final size:19
Alignment explanation
Indices: 47474175--47474216 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
47474165 TGATAATCAT
47474175 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
47474197 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
47474216 T
1 T
47474217 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:47480077 original size:24 final size:24
Alignment explanation
Indices: 47480049--47480098 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
47480039 TTAAAACTAC
47480049 TTCTA-AAGAAAACCCAAGAGAGAA
1 TTCTAGAAGAAAACCCAA-AGAGAA
* *
47480073 TTCTAGCAGAAAACTCAAAGAGAA
1 TTCTAGAAGAAAACCCAAAGAGAA
47480097 TT
1 TT
47480099 TTTCACTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.18
Consensus pattern (24 bp):
TTCTAGAAGAAAACCCAAAGAGAA
Found at i:47481522 original size:27 final size:27
Alignment explanation
Indices: 47481454--47481522 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
47481444 ATGACGTATC
*
47481454 TCATGATAGTTCAAGTGAATTATGAGT
1 TCATGATAGTTCATGTGAATTATGAGT
* * *
47481481 TGACGCACTA--ACATGTGAATTATGAGT
1 TCATG-A-TAGTTCATGTGAATTATGAGT
47481508 TCATGATAGTTCATG
1 TCATGATAGTTCATG
47481523 ATTGTCCAAG
Statistics
Matches: 31, Mismatches: 7, Indels: 8
0.67 0.15 0.17
Matches are distributed among these distances:
25 2 0.06
26 1 0.03
27 25 0.81
28 1 0.03
29 2 0.06
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.35
Consensus pattern (27 bp):
TCATGATAGTTCATGTGAATTATGAGT
Found at i:47485818 original size:58 final size:60
Alignment explanation
Indices: 47485756--47485919 Score: 185
Period size: 59 Copynumber: 2.8 Consensus size: 60
47485746 CACAAAGGCG
47485756 TTCTTTTAACAAAG-TTAGCCACAAAGGCTTCCTTTTAACAGAGAT-AGCAACAAAAGAT
1 TTCTTTTAACAAAGATTAGCCACAAAGGCTTCCTTTTAACAGAGATCAGCAACAAAAGAT
* * * * * *
47485814 TTCTTATAACAAAGATT-GCCACAAAGGCTT-CTTTATAACAGATATCAGCCATAAAGGCT
1 TTCTTTTAACAAAGATTAGCCACAAAGGCTTCCTTT-TAACAGAGATCAGCAACAAAAGAT
* * * * *
47485873 TCCTTTTAACAGAGATCA-CCACAAAGGCTTCCTTATAATAGAGATCA
1 TTCTTTTAACAAAGATTAGCCACAAAGGCTTCCTTTTAACAGAGATCA
47485920 CCAGAAAGGC
Statistics
Matches: 88, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
57 4 0.05
58 35 0.40
59 46 0.52
60 3 0.03
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (60 bp):
TTCTTTTAACAAAGATTAGCCACAAAGGCTTCCTTTTAACAGAGATCAGCAACAAAAGAT
Found at i:47485904 original size:29 final size:30
Alignment explanation
Indices: 47485744--47485935 Score: 191
Period size: 29 Copynumber: 6.6 Consensus size: 30
47485734 TTAGAGTCTT
* *
47485744 GCCACAAAGGCGTT-CTTTTAACAAAG-TTA
1 GCCACAAAGGC-TTCCTTTTAACAGAGATCA
47485773 GCCACAAAGGCTTCCTTTTAACAGAGAT-A
1 GCCACAAAGGCTTCCTTTTAACAGAGATCA
* * * * * * *
47485802 GCAACAAAAGATTTCTTATAACAAAGAT-T
1 GCCACAAAGGCTTCCTTTTAACAGAGATCA
*
47485831 GCCACAAAGGCTT-CTTTATAACAGATATCA
1 GCCACAAAGGCTTCCTTT-TAACAGAGATCA
*
47485861 GCCATAAAGGCTTCCTTTTAACAGAGATCA
1 GCCACAAAGGCTTCCTTTTAACAGAGATCA
* *
47485891 -CCACAAAGGCTTCCTTATAATAGAGATCA
1 GCCACAAAGGCTTCCTTTTAACAGAGATCA
*
47485920 -CCAGAAAGGCTTCCTT
1 GCCACAAAGGCTTCCTT
47485936 CTAAGGAAAT
Statistics
Matches: 137, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
28 5 0.04
29 104 0.76
30 24 0.18
31 4 0.03
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.26
Consensus pattern (30 bp):
GCCACAAAGGCTTCCTTTTAACAGAGATCA
Found at i:47485908 original size:88 final size:87
Alignment explanation
Indices: 47485742--47485910 Score: 227
Period size: 88 Copynumber: 1.9 Consensus size: 87
47485732 TTTTAGAGTC
*
47485742 TTGCCACAAAGGCGTTCTTTTAACAAAGTTAGCCACAAAGGCTTCCTTTTAACAGAGATAGCAAC
1 TTGCCACAAAGGCGTTCTTTTAACAAAGTCAGCCACAAAGGCTTCCTTTTAACAGAGATAGCAAC
*
47485807 AAAAGATTTCTTATAACAAAGA
66 AAAAGATTCCTTATAACAAAGA
*
47485829 TTGCCACAAAGGC-TTCTTTATAACAGATA-TCAGCCATAAAGGCTTCCTTTTAACAGAGATCA-
1 TTGCCACAAAGGCGTTCTTT-TAACA-A-AGTCAGCCACAAAGGCTTCCTTTTAACAGAGAT-AG
* * *
47485891 CCACAAAGGCTTCCTTATAA
62 CAACAAAAGATTCCTTATAA
47485911 TAGAGATCAC
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
86 6 0.08
87 18 0.25
88 46 0.64
89 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (87 bp):
TTGCCACAAAGGCGTTCTTTTAACAAAGTCAGCCACAAAGGCTTCCTTTTAACAGAGATAGCAAC
AAAAGATTCCTTATAACAAAGA
Found at i:47485928 original size:88 final size:88
Alignment explanation
Indices: 47485745--47485932 Score: 222
Period size: 88 Copynumber: 2.1 Consensus size: 88
47485735 TAGAGTCTTG
*
47485745 CCACAAAGGCGTTCTTT-TAACA-A-AGTTAGCCACAAAGGCTTCCTTTTAACAGAGATAGCAAC
1 CCACAAAGGC-TTCTTTATAACAGATA-TCAGCCACAAAGGCTTCCTTTTAACAGAGATAGCAAC
* **
47485807 AAAAGATTTCTTATAACAAAGATTG
64 AAAAGATTCCTTATAACAAAGATCA
* *
47485832 CCACAAAGGCTTCTTTATAACAGATATCAGCCATAAAGGCTTCCTTTTAACAGAGATCA-CCACA
1 CCACAAAGGCTTCTTTATAACAGATATCAGCCACAAAGGCTTCCTTTTAACAGAGAT-AGCAACA
* * * *
47485896 AAGGCTTCCTTATAATAGAGATCA
65 AAAGATTCCTTATAACAAAGATCA
*
47485920 CCAGAAAGGCTTC
1 CCACAAAGGCTTC
47485933 CTTCTAAGGA
Statistics
Matches: 86, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
86 6 0.07
87 15 0.17
88 63 0.73
89 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (88 bp):
CCACAAAGGCTTCTTTATAACAGATATCAGCCACAAAGGCTTCCTTTTAACAGAGATAGCAACAA
AAGATTCCTTATAACAAAGATCA
Found at i:47487486 original size:32 final size:32
Alignment explanation
Indices: 47487418--47487684 Score: 193
Period size: 32 Copynumber: 8.4 Consensus size: 32
47487408 GAATGACTAT
* * * *
47487418 AAGCCATAAGT-ACAGTAATGTGATTGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
** *
47487449 AAGCCATCAGTAGTAGTGATATGATCGGTACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * * * *
47487481 TAGCCATTAGTAACAGTAACATGATCGACACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
*
47487513 AAGCCATCAGTAGCAGTGATATGATCGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
* * *
47487545 CAGCCATCAATAACAGTGAAATGATCGGCACA
1 AAGCCATCAGTAACAGTGATATGATCGGCACA
** * * * * * **
47487577 CAA-CCATTGGTATCGGTAATATAATTGATACA
1 -AAGCCATCAGTAACAGTGATATGATCGGCACA
** * *
47487609 AAGCCATCAGTAATGGT-ACTATGACCGACACA
1 AAGCCATCAGTAACAGTGA-TATGATCGGCACA
*
47487641 AAGCCATCAGTAACGGT-ACTATGA-CTGGCACA
1 AAGCCATCAGTAACAGTGA-TATGATC-GGCACA
47487673 AAGCCATCAGTA
1 AAGCCATCAGTA
47487685 GTATCGCAGC
Statistics
Matches: 184, Mismatches: 47, Indels: 9
0.77 0.20 0.04
Matches are distributed among these distances:
31 14 0.08
32 169 0.92
33 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTGATATGATCGGCACA
Found at i:47487610 original size:96 final size:95
Alignment explanation
Indices: 47487418--47487654 Score: 233
Period size: 96 Copynumber: 2.5 Consensus size: 95
47487408 GAATGACTAT
* * * * ** * * *
47487418 AAGCCATAAGTACAGTAATGTGATTGGCACAAAGCCATCAGTAGTAGTGATATGATCGGTACATA
1 AAGCCATCAGTACAGTAATATGATCGGCACAAAGCCATCAATAACAGTGAAATGATCGGCACACA
* *
47487483 GCCATTAGTAACAGTAACATGATCGACACA
66 ACCATTAGTAACAGTAACATAATCGACACA
* *
47487513 AAGCCATCAGTAGCAGTGATATGATCGGCACACAGCCATCAATAACAGTGAAATGATCGGCACAC
1 AAGCCATCAGTA-CAGTAATATGATCGGCACAAAGCCATCAATAACAGTGAAATGATCGGCACAC
* * * * * *
47487578 AACCATTGGTATCGGTAATATAATTGATACA
65 AACCATTAGTAACAGTAACATAATCGACACA
* * * *
47487609 AAGCCATCAGTA-ATGGTACTATGACCGACACAAAGCCATCAGTAAC
1 AAGCCATCAGTACA--GTAATATGATCGGCACAAAGCCATCAATAAC
47487655 GGTACTATGA
Statistics
Matches: 114, Mismatches: 25, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
94 1 0.01
95 11 0.10
96 102 0.89
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.22
Consensus pattern (95 bp):
AAGCCATCAGTACAGTAATATGATCGGCACAAAGCCATCAATAACAGTGAAATGATCGGCACACA
ACCATTAGTAACAGTAACATAATCGACACA
Found at i:47487889 original size:24 final size:23
Alignment explanation
Indices: 47487856--47487928 Score: 65
Period size: 24 Copynumber: 3.1 Consensus size: 23
47487846 CCATGCTCAG
*
47487856 AATCAATCATTCAAATCACATACA
1 AATCAGTCATTCAAA-CACATACA
* * * *
47487880 AATCAGTCATACCAAACAAAGAAA
1 AATCAGTCAT-TCAAACACATACA
* *
47487904 AATCAGTCATTTAACCACATACA
1 AATCAGTCATTCAAACACATACA
47487927 AA
1 AA
47487929 ACAATAATTT
Statistics
Matches: 37, Mismatches: 11, Indels: 3
0.73 0.22 0.06
Matches are distributed among these distances:
23 9 0.24
24 24 0.65
25 4 0.11
ACGTcount: A:0.52, C:0.23, G:0.04, T:0.21
Consensus pattern (23 bp):
AATCAGTCATTCAAACACATACA
Found at i:47488021 original size:27 final size:27
Alignment explanation
Indices: 47487984--47488274 Score: 171
Period size: 27 Copynumber: 10.8 Consensus size: 27
47487974 GGGCATTATA
* *
47487984 GTCATTTTACCCTACAGGGGTGTTACG
1 GTCATTTTACCCTATAGGGGTATTACG
* * *
47488011 GTTATTTTACCCCATAGGGGCATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
* * *
47488038 GTGATTTTACCTTATAGGGGTATTACA
1 GTCATTTTACCCTATAGGGGTATTACG
* * * **
47488065 GTCATTTTACCCTATTGAGATATTTTG
1 GTCATTTTACCCTATAGGGGTATTACG
* *
47488092 GT-ATTCTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTACG
* * * *
47488118 ATCATTTTACCCCATCGAGGGTATTTCG
1 GTCATTTTACCCTATAG-GGGTATTACG
* * *
47488146 ATCATTTTACCC-ATCGTGGGTATTTCG
1 GTCATTTTACCCTATAG-GGGTATTACG
* * ***
47488173 ATCATTTTACCC-ATCGAGGGTATTTTA
1 GTCATTTTACCCTATAG-GGGTATTACG
* * * * *
47488200 GTTATTTTA-TCTATCGAAGGTATTTCG
1 GTCATTTTACCCTATAG-GGGTATTACG
* *
47488227 GTCATTTTACCCT-TCAAGGGTATTTCG
1 GTCATTTTACCCTAT-AGGGGTATTACG
*
47488254 ATCATTTTACCCT-TCAGGGGT
1 GTCATTTTACCCTAT-AGGGGT
47488275 GTTTCTATCT
Statistics
Matches: 215, Mismatches: 44, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
26 21 0.10
27 170 0.79
28 24 0.11
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTACG
Found at i:47488279 original size:27 final size:27
Alignment explanation
Indices: 47488108--47488272 Score: 192
Period size: 27 Copynumber: 6.1 Consensus size: 27
47488098 TACCCTATAG
*
47488108 GGGTATTTCGATCATTTTACCCCATCGA
1 GGGTATTTCGATCATTTTA-CCCTTCGA
* *
47488136 GGGTATTTCGATCATTTTACCCATCGT
1 GGGTATTTCGATCATTTTACCCTTCGA
*
47488163 GGGTATTTCGATCATTTTACCCATCGA
1 GGGTATTTCGATCATTTTACCCTTCGA
* * *
47488190 GGGTATTT-TAGTTATTTTA-TCTATCGA
1 GGGTATTTCGA-TCATTTTACCCT-TCGA
* * *
47488217 AGGTATTTCGGTCATTTTACCCTTCAA
1 GGGTATTTCGATCATTTTACCCTTCGA
47488244 GGGTATTTCGATCATTTTACCCTTC-A
1 GGGTATTTCGATCATTTTACCCTTCGA
47488270 GGG
1 GGG
47488273 GTGTTTCTAT
Statistics
Matches: 119, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.05
27 92 0.77
28 21 0.18
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGATCATTTTACCCTTCGA
Found at i:47491883 original size:24 final size:24
Alignment explanation
Indices: 47491851--47491898 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
47491841 GATTGATTTG
47491851 ATATGCATTATCGTTAATGAAATT
1 ATATGCATTATCGTTAATGAAATT
47491875 ATATGCATTATCGTTAATGAAATT
1 ATATGCATTATCGTTAATGAAATT
47491899 GAGTACTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (24 bp):
ATATGCATTATCGTTAATGAAATT
Found at i:47495531 original size:19 final size:18
Alignment explanation
Indices: 47495501--47495539 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 18
47495491 TGGTTATTAG
47495501 TATTTTATATTTTAATAT
1 TATTTTATATTTTAATAT
47495519 TATTTTCATATTTTAATAT
1 TATTTT-ATATTTTAATAT
47495538 TA
1 TA
47495540 AAATTAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (18 bp):
TATTTTATATTTTAATAT
Found at i:47495691 original size:22 final size:22
Alignment explanation
Indices: 47495663--47495705 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
47495653 AATATGATTT
47495663 AATATTAAATT-AATATAATATA
1 AATATTAAATTAAAT-TAATATA
*
47495685 AATATTAGATTAAATTAATAT
1 AATATTAAATTAAATTAATAT
47495706 TAAAGTGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
AATATTAAATTAAATTAATATA
Found at i:47495709 original size:11 final size:12
Alignment explanation
Indices: 47495661--47495708 Score: 50
Period size: 11 Copynumber: 4.3 Consensus size: 12
47495651 TTAATATGAT
47495661 TTAATATTAA-A
1 TTAATATTAATA
47495672 TTAATA-TAATA
1 TTAATATTAATA
* *
47495683 TAAATATT-AGA
1 TTAATATTAATA
47495694 TTAA-ATTAATA
1 TTAATATTAATA
47495705 TTAA
1 TTAA
47495709 AGTGATTAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
10 6 0.20
11 23 0.77
12 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (12 bp):
TTAATATTAATA
Found at i:47499717 original size:13 final size:13
Alignment explanation
Indices: 47499699--47499723 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47499689 TACTAAATTT
47499699 TCATGGATTCAAG
1 TCATGGATTCAAG
47499712 TCATGGATTCAA
1 TCATGGATTCAA
47499724 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:47500481 original size:85 final size:85
Alignment explanation
Indices: 47500391--47500611 Score: 433
Period size: 85 Copynumber: 2.6 Consensus size: 85
47500381 TGCACCAACA
*
47500391 CAACATGTCTATGACATGTTTTTAGCCATAACATCTTGTCCACCCATGCTCTTTATTTTATTAAT
1 CAACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCACCCATGCTCTTTATTTTATTAAT
47500456 CCTTACATAATGCACTACCC
66 CCTTACATAATGCACTACCC
47500476 CAACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCACCCATGCTCTTTATTTTATTAAT
1 CAACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCACCCATGCTCTTTATTTTATTAAT
47500541 CCTTACATAATGCACTACCC
66 CCTTACATAATGCACTACCC
47500561 CAACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCACCCATGCTC
1 CAACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCACCCATGCTC
47500612 ATGGCCGGCC
Statistics
Matches: 135, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 135 1.00
ACGTcount: A:0.27, C:0.27, G:0.09, T:0.38
Consensus pattern (85 bp):
CAACATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCACCCATGCTCTTTATTTTATTAAT
CCTTACATAATGCACTACCC
Found at i:47505907 original size:17 final size:17
Alignment explanation
Indices: 47505885--47505919 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
47505875 ACCAAAAAAG
*
47505885 AATGTAAAAGCTGTAAT
1 AATGTAAAAGCTATAAT
47505902 AATGTAAAAGCTATAAT
1 AATGTAAAAGCTATAAT
47505919 A
1 A
47505920 GATTAAGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (17 bp):
AATGTAAAAGCTATAAT
Found at i:47511012 original size:21 final size:21
Alignment explanation
Indices: 47510983--47511026 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
47510973 ACACCAAAAC
*
47510983 AGGCTTTTAGCAGCGCTTTTT
1 AGGCCTTTAGCAGCGCTTTTT
*
47511004 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCAGCGCTTTTT
47511025 AG
1 AG
47511027 CGTCGCAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.20, G:0.27, T:0.39
Consensus pattern (21 bp):
AGGCCTTTAGCAGCGCTTTTT
Found at i:47511195 original size:42 final size:43
Alignment explanation
Indices: 47511086--47511461 Score: 133
Period size: 43 Copynumber: 8.7 Consensus size: 43
47511076 GCTAATGAAT
* *
47511086 GCGCCGCTAAAGACCCTGATCTATAGCGGCGCTTCTAGCACAA
1 GCGCCGCTAAAGACCTTGATCTTTAGCGGCGCTTCTAGCACAA
* * * * ***
47511129 ACGCCGCTGAAGA-CTAAGACCTTTAGCGGCGCTT-TAGTGGAA
1 GCGCCGCTAAAGACCT-TGATCTTTAGCGGCGCTTCTAGCACAA
* * *
47511171 GCGCCGCTAAAGACCTTGATCTTTAGCGGCGTTTGT-GCTAGAA
1 GCGCCGCTAAAGACCTTGATCTTTAGCGGCGCTTCTAGC-ACAA
* * * ** * * * ** *
47511214 GCGCCACTATAGATCAGGGTCTTTAGCGGCGTTTTTTTCTCAA
1 GCGCCGCTAAAGACCTTGATCTTTAGCGGCGCTTCTAGCACAA
* * * * * *
47511257 ACGCCGC-AATAGACCCTGATCTATAGCGACGCTT-T-CCCCTAAA
1 GCGCCGCTAA-AGACCTTGATCTTTAGCGGCGCTTCTAGCAC--AA
* * * * * *
47511300 ACGCCGC-AATAGACCCTGATCTATAGCGGCGTTTCGACCACAAA
1 GCGCCGCTAA-AGACCTTGATCTTTAGCGGCGCTTCTAGCAC-AA
* * * * * ** *
47511344 ACGTCACTAAAGAACC-TAATCTTTAGCAGCGCTT-TCCCCAAAA
1 GCGCCGCTAAAG-ACCTTGATCTTTAGCGGCGCTTCT-AGCACAA
* * * * **
47511387 ACGCCGCTAAAGACCATGATCTTTAGTGGCGCTTTTTCCACAA
1 GCGCCGCTAAAGACCTTGATCTTTAGCGGCGCTTCTAGCACAA
* *
47511430 ACGCCACTAAAGACCCTT-ATCTTTAGCGGCGC
1 GCGCCGCTAAAGA-CCTTGATCTTTAGCGGCGC
47511462 AGCCTCTGCT
Statistics
Matches: 256, Mismatches: 61, Indels: 32
0.73 0.17 0.09
Matches are distributed among these distances:
41 2 0.01
42 38 0.15
43 176 0.69
44 32 0.12
45 8 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (43 bp):
GCGCCGCTAAAGACCTTGATCTTTAGCGGCGCTTCTAGCACAA
Found at i:47511284 original size:43 final size:43
Alignment explanation
Indices: 47511237--47511333 Score: 140
Period size: 43 Copynumber: 2.3 Consensus size: 43
47511227 TCAGGGTCTT
*** *
47511237 TAGCGGCGTTTTTTTCTCAAACGCCGCAATAGACCCTGATCTA
1 TAGCGGCGTTTTCCCCTAAAACGCCGCAATAGACCCTGATCTA
* *
47511280 TAGCGACGCTTTCCCCTAAAACGCCGCAATAGACCCTGATCTA
1 TAGCGGCGTTTTCCCCTAAAACGCCGCAATAGACCCTGATCTA
47511323 TAGCGGCGTTT
1 TAGCGGCGTTT
47511334 CGACCACAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (43 bp):
TAGCGGCGTTTTCCCCTAAAACGCCGCAATAGACCCTGATCTA
Found at i:47511388 original size:87 final size:86
Alignment explanation
Indices: 47511286--47511461 Score: 221
Period size: 87 Copynumber: 2.0 Consensus size: 86
47511276 TCTATAGCGA
* * *
47511286 CGCTTTCCCCTAAAACGCCGC-AATAGACCCTGATCTATAGCGGCG-TTTCGACCACAAAACGTC
1 CGCTTTCCCCAAAAACGCCGCTAA-AGACCATGATCTATAGCGGCGCTTT-GACCAC-AAACGCC
47511349 ACTAAAGAACCTAATCTTTAGCAG
63 ACTAAAGAACCTAATCTTTAGCAG
* * **
47511373 CGCTTTCCCCAAAAACGCCGCTAAAGACCATGATCTTTAGTGGCGCTTTTTCCACAAACGCCACT
1 CGCTTTCCCCAAAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTTGACCACAAACGCCACT
* * *
47511438 AAAGACCCTTATCTTTAGCGG
66 AAAGAACCTAATCTTTAGCAG
47511459 CGC
1 CGC
47511462 AGCCTCTGCT
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
86 30 0.39
87 42 0.55
88 5 0.06
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.23
Consensus pattern (86 bp):
CGCTTTCCCCAAAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTTGACCACAAACGCCACT
AAAGAACCTAATCTTTAGCAG
Found at i:47511389 original size:43 final size:43
Alignment explanation
Indices: 47511275--47511461 Score: 155
Period size: 43 Copynumber: 4.3 Consensus size: 43
47511265 ATAGACCCTG
* * * * * *
47511275 ATCTATAGCGACGCTTTCCCCTAAAACGCCGC-AATAGACCCTG
1 ATCTTTAGCGGCGCTTTCCCCAAAAACGCCACTAA-AGAACCTA
* * *
47511318 ATCTATAGCGGCG-TTTCGACCACAAAACGTCACTAAAGAACCTA
1 ATCTTTAGCGGCGCTTTC-CCCA-AAAACGCCACTAAAGAACCTA
* * *
47511362 ATCTTTAGCAGCGCTTTCCCCAAAAACGCCGCTAAAG-ACCATG
1 ATCTTTAGCGGCGCTTTCCCCAAAAACGCCACTAAAGAACC-TA
* ** * * *
47511405 ATCTTTAGTGGCGCTTTTTCCACAAACGCCACTAAAGACCCTT
1 ATCTTTAGCGGCGCTTTCCCCAAAAACGCCACTAAAGAACCTA
47511448 ATCTTTAGCGGCGC
1 ATCTTTAGCGGCGC
47511462 AGCCTCTGCT
Statistics
Matches: 116, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
42 7 0.06
43 73 0.63
44 30 0.26
45 6 0.05
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.24
Consensus pattern (43 bp):
ATCTTTAGCGGCGCTTTCCCCAAAAACGCCACTAAAGAACCTA
Found at i:47511508 original size:21 final size:21
Alignment explanation
Indices: 47511460--47511556 Score: 68
Period size: 21 Copynumber: 4.6 Consensus size: 21
47511450 CTTTAGCGGC
*
47511460 GCAGCCTCTGCTTCCCTCGTT
1 GCAGCCTCTGCTTCCCTCGCT
*** *
47511481 TTGGCCTTTGCTTCCCTCGCT
1 GCAGCCTCTGCTTCCCTCGCT
* * *
47511502 GCAGCCTGTACTTCTCTCGCT
1 GCAGCCTCTGCTTCCCTCGCT
* * * *
47511523 ACCGCCTCTGCTTCTCTTGCT
1 GCAGCCTCTGCTTCCCTCGCT
* *
47511544 GCCGCATCTGCTT
1 GCAGCCTCTGCTT
47511557 TAAGCTGCTG
Statistics
Matches: 58, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 58 1.00
ACGTcount: A:0.05, C:0.40, G:0.19, T:0.36
Consensus pattern (21 bp):
GCAGCCTCTGCTTCCCTCGCT
Found at i:47511604 original size:66 final size:66
Alignment explanation
Indices: 47511532--47511672 Score: 169
Period size: 66 Copynumber: 2.1 Consensus size: 66
47511522 TACCGCCTCT
** * *
47511532 GCTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTTGAATC
1 GCTTCTCTCACTGCCACATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTT-GTTGAACC
47511595 TAA
64 TAA
* * * * *
47511598 GCTTCTCTCACTGCTACATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGAACCTC
1 GCTTCTCTCACTGCCACATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGAACCTA
47511663 A
66 A
47511664 GCTTCTCTC
1 GCTTCTCTC
47511673 GATGTTGCCT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
65 1 0.02
66 59 0.92
67 4 0.06
ACGTcount: A:0.15, C:0.27, G:0.17, T:0.41
Consensus pattern (66 bp):
GCTTCTCTCACTGCCACATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTGTTGAACCTA
A
Found at i:47511689 original size:66 final size:66
Alignment explanation
Indices: 47511548--47511696 Score: 160
Period size: 66 Copynumber: 2.3 Consensus size: 66
47511538 CTTGCTGCCG
* * *
47511548 CATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATACTTTCGTTGAATCTAAGCTTCTCTCACTGC
1 CATCCGCTTTAAGTTG-TAGCTGGAGTTCTTCATACTTTCGTTGAACCTAAGCTTCTCTCACTGC
47511612 TA
65 TA
* * * *
47511614 CATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTT-TTTGAACCTCAGCTTCTCTCGA-TG
1 CATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATA-CTTTCGTTGAACCTAAGCTTCTCTC-ACTG
* *
47511677 TTG
64 CTA
*
47511680 CCTCCGCTTTAAGTTGT
1 CATCCGCTTTAAGTTGT
47511697 GTAATTTGCT
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
65 1 0.01
66 64 0.91
67 5 0.07
ACGTcount: A:0.16, C:0.25, G:0.17, T:0.42
Consensus pattern (66 bp):
CATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATACTTTCGTTGAACCTAAGCTTCTCTCACTGCT
A
Found at i:47523600 original size:22 final size:22
Alignment explanation
Indices: 47523568--47523613 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
47523558 TAATTAAGTT
*
47523568 ATGTAATTTATATATAATATTA
1 ATGTAAGTTATATATAATATTA
*
47523590 ATGTAAGTTATGTATAATATTA
1 ATGTAAGTTATATATAATATTA
47523612 AT
1 AT
47523614 TAATTAAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (22 bp):
ATGTAAGTTATATATAATATTA
Found at i:47523613 original size:56 final size:56
Alignment explanation
Indices: 47523527--47523643 Score: 216
Period size: 56 Copynumber: 2.1 Consensus size: 56
47523517 GACTCGTATC
47523527 AATATTAATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATATAT
1 AATATTAATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATATAT
* *
47523583 AATATTAATGTAAGTTATGTATAATATTAATTAATTAAGTTATTTAATTTATGTAT
1 AATATTAATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATATAT
47523639 AATAT
1 AATAT
47523644 CACATCACCC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (56 bp):
AATATTAATGTAAGTTATGTATAATATTAATTAATTAAGTTATGTAATTTATATAT
Found at i:47526399 original size:8 final size:10
Alignment explanation
Indices: 47526376--47526412 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
47526366 TAATAACTAT
47526376 ATATATATCC
1 ATATATATCC
*
47526386 ATATATATTC
1 ATATATATCC
47526396 ATATATATCC
1 ATATATATCC
47526406 ATATATA
1 ATATATA
47526413 AGTAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (10 bp):
ATATATATCC
Found at i:47528150 original size:14 final size:14
Alignment explanation
Indices: 47528131--47528198 Score: 52
Period size: 15 Copynumber: 4.9 Consensus size: 14
47528121 ATGACCGTTG
47528131 AAACCCTAAATCTC
1 AAACCCTAAATCTC
*
47528145 AAACCCCTAAACCTCC
1 AAA-CCCTAAATCT-C
*
47528161 AACCCCTAAAT-T-
1 AAACCCTAAATCTC
* *
47528173 -AACCTTAAATCCC
1 AAACCCTAAATCTC
*
47528186 AAACCTTAAATCT
1 AAACCCTAAATCT
47528199 ATACCCAGTC
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
11 8 0.19
14 15 0.36
15 16 0.38
16 3 0.07
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.22
Consensus pattern (14 bp):
AAACCCTAAATCTC
Found at i:47528154 original size:15 final size:15
Alignment explanation
Indices: 47528134--47528171 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
47528124 ACCGTTGAAA
47528134 CCCTAAATCTCAAAC
1 CCCTAAATCTCAAAC
* *
47528149 CCCTAAACCTCCAAC
1 CCCTAAATCTCAAAC
47528164 CCCTAAAT
1 CCCTAAAT
47528172 TAACCTTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.37, C:0.45, G:0.00, T:0.18
Consensus pattern (15 bp):
CCCTAAATCTCAAAC
Found at i:47528964 original size:41 final size:41
Alignment explanation
Indices: 47528688--47529006 Score: 226
Period size: 41 Copynumber: 7.8 Consensus size: 41
47528678 TTTTGTTACT
* *
47528688 ATTAGCGGCGCTTCGGA-AAAAACGCCGCTAAAGG-TAG--C
1 ATTAGCGGCGC-TCAGATAAAAACGCCGCTAAAGGACAGAAC
* * * * **
47528726 ATTAGCGGCGCTTACATATAAAACGCCGCCAAAGGCCAGAGT
1 ATTAGCGGCGCTCAGATA-AAAACGCCGCTAAAGGACAGAAC
* * *
47528768 ATTAGTGGCGCTCAGATAAAAACGCCACTAAA-AACACGAAC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACA-GAAC
* * * * * *
47528809 TTTAACGGCGCTTAGAAAAAAACGCCACTAAAGAACAGAGA-
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACAGA-AC
* * * * * * *
47528850 ATTAGTGGCGCTCAGACAATAACGCCACT-AATGATACGAGC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACA-GAAC
* * *
47528891 ATTAGCGGCGCTTAGACAAAAACGCCGCTAAAGGCCAGAAC
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACAGAAC
* *
47528932 ATTAGTGGCGCTCAGATAAAAACGCCGCTAAA-GATCGGAGA-
1 ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGA-CAGA-AC
*
47528973 ATTAGCGGCGCT-AAAGTAAAAACGCCGCTAAAGG
1 ATTAGCGGCGCTCAGA-TAAAAACGCCGCTAAAGG
47529007 TTTAAAAATC
Statistics
Matches: 221, Mismatches: 45, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
37 2 0.01
38 12 0.05
39 15 0.07
40 11 0.05
41 155 0.70
42 26 0.12
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.16
Consensus pattern (41 bp):
ATTAGCGGCGCTCAGATAAAAACGCCGCTAAAGGACAGAAC
Found at i:47528977 original size:82 final size:80
Alignment explanation
Indices: 47528688--47529006 Score: 308
Period size: 82 Copynumber: 3.9 Consensus size: 80
47528678 TTTTGTTACT
* * * * * *
47528688 ATTAGCGGCGCTTCGGA-AAAAACGCCGCTAAAGGT--AGCATTAGCGGCGCTTACATATAAAAC
1 ATTAGTGGCGC-TCAGATAAAAACGCCACTAAAGATCGAGAATTAGCGGCGCTTAGATA-AAAAC
* *
47528750 GCCGCCAAAGGCCAGAGT
64 GCCGCTAAAGGCCAGA-A
* * *
47528768 ATTAGTGGCGCTCAGATAAAAACGCCACTAAA-AAC-ACGAACTTTAACGGCGCTTAGAAAAAAA
1 ATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATCGA-GAA--TTAGCGGCGCTTAGATAAAAA
* **
47528831 CGCCACTAAAGAACAGAGA
63 CGCCGCTAAAGGCCAGA-A
* * * * *
47528850 ATTAGTGGCGCTCAGACAATAACGCCACTAATGATACGAGCATTAGCGGCGCTTAGACAAAAACG
1 ATTAGTGGCGCTCAGATAAAAACGCCACTAAAGAT-CGAGAATTAGCGGCGCTTAGATAAAAACG
47528915 CCGCTAAAGGCCAGAA
65 CCGCTAAAGGCCAGAA
* *
47528931 CATTAGTGGCGCTCAGATAAAAACGCCGCTAAAGATCGGAGAATTAGCGGCGC-TAAAGTAAAAA
1 -ATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATC-GAGAATTAGCGGCGCTTAGA-TAAAAA
47528995 CGCCGCTAAAGG
63 CGCCGCTAAAGG
47529007 TTTAAAAATC
Statistics
Matches: 197, Mismatches: 31, Indels: 20
0.79 0.12 0.08
Matches are distributed among these distances:
79 4 0.02
80 25 0.13
81 7 0.04
82 142 0.72
83 15 0.08
84 3 0.02
85 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.16
Consensus pattern (80 bp):
ATTAGTGGCGCTCAGATAAAAACGCCACTAAAGATCGAGAATTAGCGGCGCTTAGATAAAAACGC
CGCTAAAGGCCAGAA
Found at i:47529320 original size:40 final size:40
Alignment explanation
Indices: 47529276--47529360 Score: 170
Period size: 40 Copynumber: 2.1 Consensus size: 40
47529266 AGTAATTTGT
47529276 TAATGAGATATTTAAATAAGTTTGTGCAAATGTTAGGTTG
1 TAATGAGATATTTAAATAAGTTTGTGCAAATGTTAGGTTG
47529316 TAATGAGATATTTAAATAAGTTTGTGCAAATGTTAGGTTG
1 TAATGAGATATTTAAATAAGTTTGTGCAAATGTTAGGTTG
47529356 TAATG
1 TAATG
47529361 GATGTATCAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.35, C:0.02, G:0.22, T:0.40
Consensus pattern (40 bp):
TAATGAGATATTTAAATAAGTTTGTGCAAATGTTAGGTTG
Found at i:47535249 original size:20 final size:19
Alignment explanation
Indices: 47535181--47535249 Score: 66
Period size: 20 Copynumber: 3.5 Consensus size: 19
47535171 CTTGTACGGG
47535181 ATTTGCACTTCGGTGCTCTT
1 ATTTGCACTTCGGTGCTC-T
* *
47535201 GTTTGCACTTCGGTGCCCCT
1 ATTTGCACTTCGGTG-CTCT
* * *
47535221 ATATACACTTCAGTGTCTCT
1 ATTTGCACTTCGGTG-CTCT
47535241 ATTTGCACT
1 ATTTGCACT
47535250 ACGATGCCCC
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 36 0.95
21 2 0.05
ACGTcount: A:0.14, C:0.28, G:0.17, T:0.41
Consensus pattern (19 bp):
ATTTGCACTTCGGTGCTCT
Found at i:47535296 original size:20 final size:20
Alignment explanation
Indices: 47535254--47535303 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
47535244 TGCACTACGA
* *
47535254 TGCCCCTGTTTGCACATTTG
1 TGCCCCTGTCTACACATTTG
47535274 TGCCCCTGTCTACAC-TTTGG
1 TGCCCCTGTCTACACATTT-G
*
47535294 TGCCCTTGTC
1 TGCCCCTGTC
47535304 ATGCATCCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 3 0.12
20 23 0.88
ACGTcount: A:0.08, C:0.34, G:0.20, T:0.38
Consensus pattern (20 bp):
TGCCCCTGTCTACACATTTG
Found at i:47537852 original size:22 final size:22
Alignment explanation
Indices: 47537792--47537852 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 22
47537782 ATAAACATTC
* * *
47537792 AATTATATTGACACAATCAATC
1 AATTATATTGGCATAATCAATA
*
47537814 AATTATATTGGTATAATCAATA
1 AATTATATTGGCATAATCAATA
*
47537836 AATTATATTGGCGTAAT
1 AATTATATTGGCATAAT
47537853 ACATCCATGG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.38
Consensus pattern (22 bp):
AATTATATTGGCATAATCAATA
Found at i:47539608 original size:20 final size:21
Alignment explanation
Indices: 47539585--47539623 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
47539575 TAAATTTCAA
*
47539585 TTTAACCCAAAA-TATTTATT
1 TTTAACCAAAAATTATTTATT
*
47539605 TTTATCCAAAAATTATTTA
1 TTTAACCAAAAATTATTTA
47539624 AAACCATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.46
Consensus pattern (21 bp):
TTTAACCAAAAATTATTTATT
Found at i:47553526 original size:9 final size:9
Alignment explanation
Indices: 47553512--47553545 Score: 59
Period size: 9 Copynumber: 3.7 Consensus size: 9
47553502 AAGTGATTGA
47553512 AAAAAATTC
1 AAAAAATTC
47553521 AAAAAAATTC
1 -AAAAAATTC
47553531 AAAAAATTC
1 AAAAAATTC
47553540 AAAAAA
1 AAAAAA
47553546 AATTTGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.18
Consensus pattern (9 bp):
AAAAAATTC
Found at i:47553527 original size:11 final size:10
Alignment explanation
Indices: 47553511--47553560 Score: 66
Period size: 11 Copynumber: 4.9 Consensus size: 10
47553501 TAAGTGATTG
47553511 AAAAAAATTC
1 AAAAAAATTC
47553521 AAAAAAATTC
1 AAAAAAATTC
47553531 -AAAAAATTC
1 AAAAAAATTC
*
47553540 AAAAAAAATTTG
1 -AAAAAAA-TTC
47553552 AAAAAAATT
1 AAAAAAATT
47553561 TGAAAAAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
9 9 0.25
10 12 0.33
11 13 0.36
12 2 0.06
ACGTcount: A:0.70, C:0.06, G:0.02, T:0.22
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:47553561 original size:11 final size:11
Alignment explanation
Indices: 47553508--47553568 Score: 65
Period size: 11 Copynumber: 5.8 Consensus size: 11
47553498 GAGTAAGTGA
47553508 TTGAAAAAAA-
1 TTGAAAAAAAT
*
47553518 TTCAAAAAAA-
1 TTGAAAAAAAT
*
47553528 TT-CAAAAAAT
1 TTGAAAAAAAT
**
47553538 TCAAAAAAAAT
1 TTGAAAAAAAT
47553549 TTGAAAAAAAT
1 TTGAAAAAAAT
47553560 TTGAAAAAA
1 TTGAAAAAA
47553569 TAAAATTTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
9 6 0.14
10 12 0.28
11 25 0.58
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.23
Consensus pattern (11 bp):
TTGAAAAAAAT
Found at i:47553566 original size:10 final size:10
Alignment explanation
Indices: 47553508--47553569 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
47553498 GAGTAAGTGA
*
47553508 TTGAAAAAAA
1 TTGAAAAAAT
* *
47553518 TTCAAAAAAA
1 TTGAAAAAAT
*
47553528 TTCAAAAAAT
1 TTGAAAAAAT
**
47553538 TCAAAAAAAAT
1 T-TGAAAAAAT
47553549 TTGAAAAAAAT
1 TTG-AAAAAAT
47553560 TTGAAAAAAT
1 TTGAAAAAAT
47553570 AAAATTTTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
10 26 0.59
11 18 0.41
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (10 bp):
TTGAAAAAAT
Found at i:47553627 original size:24 final size:24
Alignment explanation
Indices: 47553600--47553645 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
47553590 TAAAATGGTT
47553600 GAATGTATTAAAAAAA-GAAGTTAC
1 GAAT-TATTAAAAAAAGGAAGTTAC
*
47553624 GAATTTTTAAAAAAAGGAAGTT
1 GAATTATTAAAAAAAGGAAGTT
47553646 GTTTGAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.52, C:0.02, G:0.17, T:0.28
Consensus pattern (24 bp):
GAATTATTAAAAAAAGGAAGTTAC
Found at i:47554636 original size:6 final size:6
Alignment explanation
Indices: 47554625--47554679 Score: 62
Period size: 6 Copynumber: 9.7 Consensus size: 6
47554615 GTGTGAGCGA
* * *
47554625 GAAAAT GAAAAT GAAAAA GAAATT G-AAA- GAACA- GAAAAT GAAAAT
1 GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT
47554670 GAAAAT GAAA
1 GAAAAT GAAA
47554680 GAGATTTTGA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
4 1 0.02
5 8 0.20
6 32 0.78
ACGTcount: A:0.67, C:0.02, G:0.18, T:0.13
Consensus pattern (6 bp):
GAAAAT
Found at i:47559772 original size:25 final size:25
Alignment explanation
Indices: 47559721--47559774 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
47559711 ATAAATCAAA
* * *
47559721 ATGCTCTCATGAGCTATAAAACGGT
1 ATGCACTCATGAGCTACAAAACAGT
**
47559746 ATGCACTCATGAGCTACAAATTAGT
1 ATGCACTCATGAGCTACAAAACAGT
47559771 ATGC
1 ATGC
47559775 TTTGACGAGC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (25 bp):
ATGCACTCATGAGCTACAAAACAGT
Found at i:47561656 original size:29 final size:29
Alignment explanation
Indices: 47561624--47561765 Score: 128
Period size: 29 Copynumber: 4.9 Consensus size: 29
47561614 TCAACTATCG
*
47561624 ACTATGAAAAGGGATGGTGATGGCCATCA
1 ACTATGAAAAGGGATGGTGATGACCATCA
**
47561653 ACTATGAAAAATGAT-GTGATGACCATCGA
1 ACTATGAAAAGGGATGGTGATGACCATC-A
** * * * ** **
47561682 A-TATTTAAAGGGATAGT-TTCAATTATTG
1 ACTATGAAAAGGGATGGTGAT-GACCATCA
*
47561710 ACTATGAAAAGGGACGGTGATGACCATCA
1 ACTATGAAAAGGGATGGTGATGACCATCA
47561739 ACTATGAAAAGGGATGGTGATGACCAT
1 ACTATGAAAAGGGATGGTGATGACCAT
47561766 TGATTAATGA
Statistics
Matches: 84, Mismatches: 24, Indels: 10
0.71 0.20 0.08
Matches are distributed among these distances:
28 22 0.26
29 61 0.73
30 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.25
Consensus pattern (29 bp):
ACTATGAAAAGGGATGGTGATGACCATCA
Found at i:47561703 original size:86 final size:87
Alignment explanation
Indices: 47561602--47561765 Score: 267
Period size: 86 Copynumber: 1.9 Consensus size: 87
47561592 CAATTAAAGA
* * *
47561602 AAAGGGATAGTTTCAACTATCGACTATGAAAAGGGATGGTGATGGCCATCAACTATGAAAAATGA
1 AAAGGGATAGTTTCAACTATCGACTATGAAAAGGGACGGTGATGACCATCAACTATGAAAAAGGA
47561667 T-GTGATGACCATCGAATATTT
66 TGGTGATGACCATCGAATATTT
* * *
47561688 AAAGGGATAGTTTCAATTATTGACTATGAAAAGGGACGGTGATGACCATCAACTATGAAAAGGGA
1 AAAGGGATAGTTTCAACTATCGACTATGAAAAGGGACGGTGATGACCATCAACTATGAAAAAGGA
47561753 TGGTGATGACCAT
66 TGGTGATGACCAT
47561766 TGATTAATGA
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
86 60 0.85
87 11 0.15
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (87 bp):
AAAGGGATAGTTTCAACTATCGACTATGAAAAGGGACGGTGATGACCATCAACTATGAAAAAGGA
TGGTGATGACCATCGAATATTT
Found at i:47561768 original size:58 final size:58
Alignment explanation
Indices: 47561620--47561780 Score: 141
Period size: 57 Copynumber: 2.8 Consensus size: 58
47561610 AGTTTCAACT
* ** * *
47561620 ATCG-ACTATGAAAAGGGATGGTGATGGCCATCAACTATGAAAAATGATGTGATGACC
1 ATCGAACTATGAAAAGGGATGGTGATGACCATTGACTATGAAAAAGGAGGTGATGACC
** * * * ** *
47561677 ATCGAA-TATTTAAAGGGATAGT-TTCAATTATTGACTATGAAAAGGGACGGTGATGACC
1 ATCGAACTATGAAAAGGGATGGTGAT-GACCATTGACTATGAAAAAGGA-GGTGATGACC
*
47561735 ATC-AACTATGAAAAGGGATGGTGATGACCATTGATTAATGAAAAAG
1 ATCGAACTATGAAAAGGGATGGTGATGACCATTGACT-ATGAAAAAG
47561781 TGATACGAAC
Statistics
Matches: 76, Mismatches: 22, Indels: 10
0.70 0.20 0.09
Matches are distributed among these distances:
56 1 0.01
57 33 0.43
58 33 0.43
59 9 0.12
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.25
Consensus pattern (58 bp):
ATCGAACTATGAAAAGGGATGGTGATGACCATTGACTATGAAAAAGGAGGTGATGACC
Found at i:47575814 original size:7 final size:7
Alignment explanation
Indices: 47575802--47575843 Score: 84
Period size: 7 Copynumber: 6.0 Consensus size: 7
47575792 AGCCAAGCCG
47575802 TGAGCAC
1 TGAGCAC
47575809 TGAGCAC
1 TGAGCAC
47575816 TGAGCAC
1 TGAGCAC
47575823 TGAGCAC
1 TGAGCAC
47575830 TGAGCAC
1 TGAGCAC
47575837 TGAGCAC
1 TGAGCAC
47575844 CCTGCAGTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.29, C:0.29, G:0.29, T:0.14
Consensus pattern (7 bp):
TGAGCAC
Found at i:47582331 original size:23 final size:22
Alignment explanation
Indices: 47582304--47582346 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
47582294 GAAATAGATT
*
47582304 AATTTAAAATATATTTATTATAA
1 AATTTAAAATA-ATTAATTATAA
47582327 AATTTAAAATAATTAATTAT
1 AATTTAAAATAATTAATTAT
47582347 TAATAGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
AATTTAAAATAATTAATTATAA
Found at i:47588999 original size:32 final size:32
Alignment explanation
Indices: 47588905--47588986 Score: 146
Period size: 32 Copynumber: 2.6 Consensus size: 32
47588895 TAATGTATTA
*
47588905 TTATATATATTTTTATGTTAATTTAGTATAAC
1 TTATATACATTTTTATGTTAATTTAGTATAAC
*
47588937 TTATATACACTTTTATGTTAATTTAGTATAAC
1 TTATATACATTTTTATGTTAATTTAGTATAAC
47588969 TTATATACATTTTTATGT
1 TTATATACATTTTTATGT
47588987 ATTTATTCTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.55
Consensus pattern (32 bp):
TTATATACATTTTTATGTTAATTTAGTATAAC
Found at i:47597103 original size:21 final size:23
Alignment explanation
Indices: 47597058--47597104 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
47597048 TCACCTGCAA
* *
47597058 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
47597081 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
47597102 TAA
1 TAA
47597105 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:47602605 original size:21 final size:23
Alignment explanation
Indices: 47602560--47602606 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
47602550 TCACCTGCAA
* *
47602560 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
47602583 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
47602604 TAA
1 TAA
47602607 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:47610141 original size:20 final size:20
Alignment explanation
Indices: 47610118--47610155 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
47610108 ATAAATACAT
47610118 ATTTACATATTAAA-ATAGAA
1 ATTTACA-ATTAAAGATAGAA
*
47610138 ATTTTCAATTAAAGATAG
1 ATTTACAATTAAAGATAG
47610156 TCAAAAGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (20 bp):
ATTTACAATTAAAGATAGAA
Found at i:47615064 original size:19 final size:21
Alignment explanation
Indices: 47615040--47615088 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
47615030 CATAATTCTG
**
47615040 TTTGTTTTTTTTTTACA-A-A
1 TTTGTTTTTTAGTTACATATA
47615059 TTTGTTTTTTAGTTACATATA
1 TTTGTTTTTTAGTTACATATA
47615080 TTTGTTTTT
1 TTTGTTTTT
47615089 AATATTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 15 0.58
20 1 0.04
21 10 0.38
ACGTcount: A:0.18, C:0.04, G:0.08, T:0.69
Consensus pattern (21 bp):
TTTGTTTTTTAGTTACATATA
Found at i:47615486 original size:25 final size:25
Alignment explanation
Indices: 47615452--47615503 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
47615442 ATTTTTTAGG
47615452 GTTAGATTAATAAATTATGGTCAAT
1 GTTAGATTAATAAATTATGGTCAAT
47615477 GTTAGATTAATAAATTATGGTCAAT
1 GTTAGATTAATAAATTATGGTCAAT
47615502 GT
1 GT
47615504 GGATTTCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.04, G:0.17, T:0.40
Consensus pattern (25 bp):
GTTAGATTAATAAATTATGGTCAAT
Found at i:47615980 original size:20 final size:20
Alignment explanation
Indices: 47615955--47615992 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
47615945 TTTCGCTACT
* *
47615955 ACATTAAATAATTTTTAAGG
1 ACATTAAAAAAATTTTAAGG
47615975 ACATTAAAAAAATTTTAA
1 ACATTAAAAAAATTTTAA
47615993 CTATTAGTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (20 bp):
ACATTAAAAAAATTTTAAGG
Found at i:47619281 original size:58 final size:58
Alignment explanation
Indices: 47619217--47619327 Score: 222
Period size: 58 Copynumber: 1.9 Consensus size: 58
47619207 GTGAAATTAG
47619217 TAAATAAACCTTGACCCACTATCTAACGAGATAGGAACCAAAGGTATAGCGAAATCAA
1 TAAATAAACCTTGACCCACTATCTAACGAGATAGGAACCAAAGGTATAGCGAAATCAA
47619275 TAAATAAACCTTGACCCACTATCTAACGAGATAGGAACCAAAGGTATAGCGAA
1 TAAATAAACCTTGACCCACTATCTAACGAGATAGGAACCAAAGGTATAGCGAA
47619328 CGCCACACTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.19
Consensus pattern (58 bp):
TAAATAAACCTTGACCCACTATCTAACGAGATAGGAACCAAAGGTATAGCGAAATCAA
Found at i:47620259 original size:52 final size:50
Alignment explanation
Indices: 47620165--47620267 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 50
47620155 GGTTTTAATT
* *
47620165 AAGATGGAAACTAAATGAACAATGAATTACTTAATGCATGACTTCATTAA
1 AAGATGCAAACTAAATGAACAATGAATTACATAATGCATGACTTCATTAA
* *
47620215 AAGATGCAAACTATAATTAAC-ATGAGAGTTACATAATGCATGACTTTATTAA
1 AAGATGCAAACTA-AATGAACAATGA-A-TTACATAATGCATGACTTCATTAA
47620267 A
1 A
47620268 TGCAGAACAC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
50 16 0.35
51 7 0.15
52 23 0.50
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.29
Consensus pattern (50 bp):
AAGATGCAAACTAAATGAACAATGAATTACATAATGCATGACTTCATTAA
Found at i:47623512 original size:13 final size:12
Alignment explanation
Indices: 47623479--47623520 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 12
47623469 TAAAAATTTA
47623479 TTTT-ATATTAT
1 TTTTAATATTAT
47623490 AATTTTAATATTAT
1 --TTTTAATATTAT
47623504 TTTTAAATATTAT
1 TTTT-AATATTAT
47623517 TTTT
1 TTTT
47623521 TATGCCGGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.15
13 16 0.59
14 7 0.26
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTTAATATTAT
Found at i:47631382 original size:11 final size:11
Alignment explanation
Indices: 47631366--47631390 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
47631356 AAACACAAGA
47631366 GAGTATCTATT
1 GAGTATCTATT
47631377 GAGTATCTATT
1 GAGTATCTATT
47631388 GAG
1 GAG
47631391 CTTACCTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (11 bp):
GAGTATCTATT
Found at i:47643002 original size:19 final size:19
Alignment explanation
Indices: 47642978--47643070 Score: 77
Period size: 19 Copynumber: 5.1 Consensus size: 19
47642968 AATAAATTAC
*
47642978 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTAAGT
47642997 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
** * * *
47643016 TGC-T-GGAATAAATT-A-C
1 T-CATCTTAGTTAATTAAGT
*
47643032 TCATCTTAGTTAATTAAAT
1 TCATCTTAGTTAATTAAGT
*
47643051 TCATCTTAGTTAATTTAGT
1 TCATCTTAGTTAATTAAGT
47643070 T
1 T
47643071 GCTGGAATAA
Statistics
Matches: 56, Mismatches: 13, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
15 1 0.02
16 2 0.04
17 7 0.12
18 7 0.12
19 38 0.68
20 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.46
Consensus pattern (19 bp):
TCATCTTAGTTAATTAAGT
Found at i:47643022 original size:54 final size:54
Alignment explanation
Indices: 47642959--47643080 Score: 217
Period size: 54 Copynumber: 2.3 Consensus size: 54
47642949 ATAAGTATTT
* *
47642959 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAGTTAATTA
1 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAATTCATCTTAGTTAATTA
*
47643013 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAATTCATCTTAGTTAATTT
1 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAATTCATCTTAGTTAATTA
47643067 AGTTGCTGGAATAA
1 AGTTGCTGGAATAA
47643081 TTTATTGTTG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.42
Consensus pattern (54 bp):
AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAATTCATCTTAGTTAATTA
Found at i:47643268 original size:74 final size:75
Alignment explanation
Indices: 47643157--47643305 Score: 219
Period size: 74 Copynumber: 2.0 Consensus size: 75
47643147 ATTAATTAAA
* * *
47643157 CTTATTAAGTCTAATATGTGTTTAATGTGTTTTAATGTGTTTGTGAATAAATGCTTGCAGGTGAC
1 CTTATTAAGTCTAATATGTGTTAAATGTGTTTTAATGTGTTTGTGAATAAATACTTACAGGTGAC
*
47643222 TATTTAGTTG
66 TATGTAGTTG
* * * *
47643232 CTTATTAAGTTTAGTATGT-TTAAATGTGTTTTAATGTGTTTGTTAATAAATATTTACAGGTGAC
1 CTTATTAAGTCTAATATGTGTTAAATGTGTTTTAATGTGTTTGTGAATAAATACTTACAGGTGAC
47643296 TATGTAGTTG
66 TATGTAGTTG
47643306 GAGTAAGTTA
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
74 49 0.74
75 17 0.26
ACGTcount: A:0.27, C:0.05, G:0.20, T:0.48
Consensus pattern (75 bp):
CTTATTAAGTCTAATATGTGTTAAATGTGTTTTAATGTGTTTGTGAATAAATACTTACAGGTGAC
TATGTAGTTG
Found at i:47645235 original size:36 final size:36
Alignment explanation
Indices: 47645192--47645272 Score: 94
Period size: 36 Copynumber: 2.2 Consensus size: 36
47645182 AAAAGAAGCG
*
47645192 AGAAAAAGAAATTG-AGAA-AAAAAGAAAAGAAAATAA
1 AGAAAAAGAAATTGAAAAAGAAAAAG-AAAGAAAA-AA
* **
47645228 AGAAAAAGCAATTGAAAAAGAAAAAGAAAGTGAAAA
1 AGAAAAAGAAATTGAAAAAGAAAAAGAAAGAAAAAA
47645264 AGAAAAAGA
1 AGAAAAAGA
47645273 GAGTGAGAGT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
36 23 0.61
37 9 0.24
38 6 0.16
ACGTcount: A:0.73, C:0.01, G:0.19, T:0.07
Consensus pattern (36 bp):
AGAAAAAGAAATTGAAAAAGAAAAAGAAAGAAAAAA
Found at i:47645249 original size:18 final size:18
Alignment explanation
Indices: 47645226--47645278 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
47645216 AAAAGAAAAT
* *
47645226 AAAGAAAAAGCAATTGAA
1 AAAGAAAAAGAAAGTGAA
47645244 AAAGAAAAAGAAAGTGAA
1 AAAGAAAAAGAAAGTGAA
*
47645262 AAAGAAAAAGAGAGTGA
1 AAAGAAAAAGAAAGTGA
47645279 GAGTTAGAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.68, C:0.02, G:0.23, T:0.08
Consensus pattern (18 bp):
AAAGAAAAAGAAAGTGAA
Found at i:47645269 original size:5 final size:6
Alignment explanation
Indices: 47645210--47645272 Score: 54
Period size: 6 Copynumber: 10.2 Consensus size: 6
47645200 AAATTGAGAA
* * ** **
47645210 AAAAAG AAAAGAA AATAAAG AAAAAG CAATTG AAAAAG AAAAAG AAAGTG
1 AAAAAG AAAA-AG AA-AAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
47645260 AAAAAG AAAAAG A
1 AAAAAG AAAAAG A
47645273 GAGTGAGAGT
Statistics
Matches: 43, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
6 35 0.81
7 6 0.14
8 2 0.05
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.06
Consensus pattern (6 bp):
AAAAAG
Found at i:47647071 original size:19 final size:19
Alignment explanation
Indices: 47647047--47647083 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
47647037 TAAATTACTT
*
47647047 ATCTTAGTTAATTGAGTTC
1 ATCTTAGTTAATTAAGTTC
47647066 ATCTTAGTTAATTAAGTT
1 ATCTTAGTTAATTAAGTT
47647084 GCTGGAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (19 bp):
ATCTTAGTTAATTAAGTTC
Found at i:47651380 original size:40 final size:40
Alignment explanation
Indices: 47651324--47651512 Score: 209
Period size: 40 Copynumber: 4.8 Consensus size: 40
47651314 AATTTTTAAA
* * * * *
47651324 TGATTGCACTTGCGTGCCCTTGTTTGTACTTTGGTACTCC
1 TGATTGCACTTACATGCCCCTGTTTGTACTTCGGTACCCC
* * *
47651364 TGATTGCATTTACGTGCCCCTGTTTGTACTTCGGTACCCT
1 TGATTGCACTTACATGCCCCTGTTTGTACTTCGGTACCCC
* * * *
47651404 TGATTACAGTTACATGGCCCTGTTTGTACTT-TGTACCCC
1 TGATTGCACTTACATGCCCCTGTTTGTACTTCGGTACCCC
*
47651443 TGATTGCACTTACATGCCCCTGTTTGTACTCCGGTACCCC
1 TGATTGCACTTACATGCCCCTGTTTGTACTTCGGTACCCC
* *** *
47651483 TGATTGTACTTTTGTGCCCCTGTTTATACT
1 TGATTGCACTTACATGCCCCTGTTTGTACT
47651513 CGAGTAACTC
Statistics
Matches: 126, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 33 0.26
40 93 0.74
ACGTcount: A:0.14, C:0.27, G:0.19, T:0.40
Consensus pattern (40 bp):
TGATTGCACTTACATGCCCCTGTTTGTACTTCGGTACCCC
Found at i:47651464 original size:79 final size:81
Alignment explanation
Indices: 47651339--47651487 Score: 239
Period size: 79 Copynumber: 1.9 Consensus size: 81
47651329 GCACTTGCGT
* * * * *
47651339 GCCCTTGTTTGTACTTTGGTACTCCTGATTGCATTTACGTGCCCCTGTTTGTACTTCGGTACCCT
1 GCCCTTGTTTGTACTTTGGTACCCCTGATTGCACTTACATGCCCCTGTTTGTACTCCGGTACCCC
47651404 TGATTACAGTTACATG
66 TGATTACAGTTACATG
47651420 GCCC-TGTTTGTACTTT-GTACCCCTGATTGCACTTACATGCCCCTGTTTGTACTCCGGTACCCC
1 GCCCTTGTTTGTACTTTGGTACCCCTGATTGCACTTACATGCCCCTGTTTGTACTCCGGTACCCC
47651483 TGATT
66 TGATT
47651488 GTACTTTTGT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
79 47 0.75
80 12 0.19
81 4 0.06
ACGTcount: A:0.14, C:0.28, G:0.19, T:0.39
Consensus pattern (81 bp):
GCCCTTGTTTGTACTTTGGTACCCCTGATTGCACTTACATGCCCCTGTTTGTACTCCGGTACCCC
TGATTACAGTTACATG
Found at i:47651502 original size:20 final size:20
Alignment explanation
Indices: 47651421--47651504 Score: 62
Period size: 20 Copynumber: 4.2 Consensus size: 20
47651411 AGTTACATGG
*
47651421 CCCTGTTTGTAC-TTTGTAC
1 CCCTGATTGTACTTTTGTAC
* *** *
47651440 CCCTGATTGCACTTACATGC
1 CCCTGATTGTACTTTTGTAC
* ***
47651460 CCCTGTTTGTACTCCGGTAC
1 CCCTGATTGTACTTTTGTAC
*
47651480 CCCTGATTGTACTTTTGTGC
1 CCCTGATTGTACTTTTGTAC
47651500 CCCTG
1 CCCTG
47651505 TTTATACTCG
Statistics
Matches: 46, Mismatches: 18, Indels: 1
0.71 0.28 0.02
Matches are distributed among these distances:
19 10 0.22
20 36 0.78
ACGTcount: A:0.12, C:0.32, G:0.18, T:0.38
Consensus pattern (20 bp):
CCCTGATTGTACTTTTGTAC
Found at i:47651504 original size:79 final size:80
Alignment explanation
Indices: 47651324--47651512 Score: 227
Period size: 79 Copynumber: 2.4 Consensus size: 80
47651314 AATTTTTAAA
* * * * * *
47651324 TGATTGCACTTGCGTGCCCTTGTTTGTACTTTGGTACTCCTGATTGCATTTACGTGCCCCTGTTT
1 TGATTACACTTACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCACTTACATGCCCCTGTTT
* *
47651389 GTACTTCGGTACCCT
66 GTACTCCGGTACCCC
* * *
47651404 TGATTACAGTTACATGGCCCTGTTTGTACTTT-GTACCCCTGATTGCACTTACATGCCCCTGTTT
1 TGATTACACTTACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCACTTACATGCCCCTGTTT
47651468 GTACTCCGGTACCCC
66 GTACTCCGGTACCCC
** ** *
47651483 TGATTGTACTTTTGTGCCCCTGTTTATACT
1 TGATTACACTTACGTGCCCCTGTTTGTACT
47651513 CGAGTAACTC
Statistics
Matches: 90, Mismatches: 19, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
79 64 0.71
80 26 0.29
ACGTcount: A:0.14, C:0.27, G:0.19, T:0.40
Consensus pattern (80 bp):
TGATTACACTTACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCACTTACATGCCCCTGTTT
GTACTCCGGTACCCC
Found at i:47654386 original size:23 final size:24
Alignment explanation
Indices: 47654360--47654411 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 24
47654350 CTGTCAATTC
*
47654360 CTGTACAT-GTATGCTCACACGAG
1 CTGTAAATAGTATGCTCACACGAG
47654383 CTGTAAATCAGTATGCTCACACGAG
1 CTGTAAAT-AGTATGCTCACACGAG
47654408 CTGT
1 CTGT
47654412 GGGTCAGAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 7 0.27
25 19 0.73
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (24 bp):
CTGTAAATAGTATGCTCACACGAG
Found at i:47667979 original size:27 final size:27
Alignment explanation
Indices: 47667608--47667972 Score: 323
Period size: 27 Copynumber: 13.5 Consensus size: 27
47667598 ACCCAAGGAT
* *
47667608 GGGTAAAATGACAGAAATACCCTC-AA
1 GGGTAAAATTACTGAAATACCCTCGAA
* *
47667634 TGGGTAAAATGACTGAAATACCCT-TAA
1 -GGGTAAAATTACTGAAATACCCTCGAA
* *
47667661 TGGGTAAAATGA-TCGAAATACCCTCGAT
1 -GGGTAAAATTACT-GAAATACCCTCGAA
* * *
47667689 GGGTAAAGTGA-TCGAAATACCCTAGAA
1 GGGTAAAATTACT-GAAATACCCTCGAA
* * *
47667716 GGGTAAAATCACCGAAAAACCCTCGAA
1 GGGTAAAATTACTGAAATACCCTCGAA
* *
47667743 GGATAAAATTA-TCAAAATACCCTCGAA
1 GGGTAAAATTACT-GAAATACCCTCGAA
* *
47667770 GGATAAAATTA-TCGAAATACCCTTGAAA
1 GGGTAAAATTACT-GAAATACCCTCG-AA
* * * *
47667798 GGTTAAAATTACTGAAA-GCCTTCAAA
1 GGGTAAAATTACTGAAATACCCTCGAA
*
47667824 GGGTAAAATTACTGAAATACCCTTGAA
1 GGGTAAAATTACTGAAATACCCTCGAA
47667851 GGGTAAAATTA-TCGAAATACCCTCGAA
1 GGGTAAAATTACT-GAAATACCCTCGAA
*
47667878 GGGTAAAATTACTAAAATACCCTCGAA
1 GGGTAAAATTACTGAAATACCCTCGAA
* * * *
47667905 AGGTAAAATTACAGAAATACCCCCAAA
1 GGGTAAAATTACTGAAATACCCTCGAA
* * * *
47667932 GGGTAAAAGTACCGGAATACCCCCGAA
1 GGGTAAAATTACTGAAATACCCTCGAA
*
47667959 GGGTAAAATGACTG
1 GGGTAAAATTACTG
47667973 TTATACCTCT
Statistics
Matches: 285, Mismatches: 43, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
26 20 0.07
27 246 0.86
28 18 0.06
29 1 0.00
ACGTcount: A:0.43, C:0.18, G:0.19, T:0.21
Consensus pattern (27 bp):
GGGTAAAATTACTGAAATACCCTCGAA
Found at i:47668155 original size:27 final size:27
Alignment explanation
Indices: 47668132--47668187 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
47668122 TGTACTGGTG
47668132 GCTATGCCACGTATACTGTTACTGGCA
1 GCTATGCCACGTATACTGTTACTGGCA
* **
47668159 GCTTTGCTGCGT-TACTGTTACTGGCA
1 GCTATGCCACGTATACTGTTACTGGCA
47668185 GCT
1 GCT
47668188 TTGCTGCATC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.16, C:0.25, G:0.25, T:0.34
Consensus pattern (27 bp):
GCTATGCCACGTATACTGTTACTGGCA
Found at i:47668176 original size:26 final size:26
Alignment explanation
Indices: 47668145--47668217 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
47668135 ATGCCACGTA
*
47668145 TACTGTTACTGGCAGCTTTGCTGCGT
1 TACTGTTACTGGCAGCTTTGCTGCAT
47668171 TACTGTTACTGGCAGCTTTGCTGCAT
1 TACTGTTACTGGCAGCTTTGCTGCAT
* * * *
47668197 CACTATTGCTGGCAACTTTGC
1 TACTGTTACTGGCAGCTTTGC
47668218 CGCGATATTG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.37
Consensus pattern (26 bp):
TACTGTTACTGGCAGCTTTGCTGCAT
Found at i:47668398 original size:28 final size:28
Alignment explanation
Indices: 47668347--47668408 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
47668337 GTATTGGGTT
* *
47668347 AAGGCCCACATTGATGCTGTATTGGGCA
1 AAGGCCCACATTGATACTGAATTGGGCA
* * *
47668375 AAGGCCCACATTGCTATTGAATTGGGCT
1 AAGGCCCACATTGATACTGAATTGGGCA
47668403 AAGGCC
1 AAGGCC
47668409 TTCATTGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (28 bp):
AAGGCCCACATTGATACTGAATTGGGCA
Found at i:47669516 original size:25 final size:25
Alignment explanation
Indices: 47669500--47669588 Score: 77
Period size: 25 Copynumber: 3.8 Consensus size: 25
47669490 CAAAGGTGAG
47669500 ATACATA-A-TACGCCACAAAGGCA
1 ATACATAGAGTACGCCACAAAGGCA
*
47669523 ATACATAGAGTACGCCACAATGGC-
1 ATACATAGAGTACGCCACAAAGGCA
*
47669547 -TAGC--AGA--ATGCCACAAAGGCA
1 ATA-CATAGAGTACGCCACAAAGGCA
* *
47669568 ATACACAGAGTACACCACAAA
1 ATACATAGAGTACGCCACAAA
47669589 TGCTAGCAGA
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
20 11 0.21
21 1 0.02
22 5 0.10
23 12 0.23
24 2 0.04
25 21 0.40
ACGTcount: A:0.45, C:0.26, G:0.17, T:0.12
Consensus pattern (25 bp):
ATACATAGAGTACGCCACAAAGGCA
Found at i:47669561 original size:20 final size:20
Alignment explanation
Indices: 47669536--47669620 Score: 71
Period size: 20 Copynumber: 4.0 Consensus size: 20
47669526 CATAGAGTAC
* *
47669536 GCCACAATGGCTAGCAGAAT
1 GCCACAAAGGCTAACAGAAT
*
47669556 GCCACAAAGGCAATACACAGAGTAC
1 GCCACAAAGGC--TA-ACAGA--AT
* * *
47669581 ACCACAAATGCTAGCAGAAT
1 GCCACAAAGGCTAACAGAAT
47669601 GCCACAAAGGCTAACAGAAT
1 GCCACAAAGGCTAACAGAAT
47669621 ATGCCATAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
20 28 0.56
22 6 0.12
23 6 0.12
25 10 0.20
ACGTcount: A:0.42, C:0.26, G:0.20, T:0.12
Consensus pattern (20 bp):
GCCACAAAGGCTAACAGAAT
Done.