Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 152 of 153
Found at i:47669562 original size:45 final size:45
Alignment explanation
Indices: 47669511--47669611 Score: 168
Period size: 45 Copynumber: 2.2 Consensus size: 45
47669501 TACATAATAC
* *
47669511 GCCACAAAGGCAATACATAGAGTACGCCAC-AATGGCTAGCAGAAT
1 GCCACAAAGGCAATACACAGAGTACACCACAAAT-GCTAGCAGAAT
47669556 GCCACAAAGGCAATACACAGAGTACACCACAAATGCTAGCAGAAT
1 GCCACAAAGGCAATACACAGAGTACACCACAAATGCTAGCAGAAT
47669601 GCCACAAAGGC
1 GCCACAAAGGC
47669612 TAACAGAATA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
45 50 0.94
46 3 0.06
ACGTcount: A:0.42, C:0.27, G:0.21, T:0.11
Consensus pattern (45 bp):
GCCACAAAGGCAATACACAGAGTACACCACAAATGCTAGCAGAAT
Found at i:47669646 original size:20 final size:21
Alignment explanation
Indices: 47669590--47669647 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 21
47669580 CACCACAAAT
* *
47669590 GCTAGCAG-AATGCCACAAAG
1 GCTAACAGAAATGCCATAAAG
47669610 GCTAACAGAATATGCCATAAAG
1 GCTAACAGAA-ATGCCATAAAG
* *
47669632 GTTATC-GAAATGCCAT
1 GCTAACAGAAATGCCAT
47669648 CTAAGCACCC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 14 0.44
21 4 0.12
22 14 0.44
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (21 bp):
GCTAACAGAAATGCCATAAAG
Found at i:47672065 original size:24 final size:26
Alignment explanation
Indices: 47672038--47672087 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
47672028 ATATAATTTC
47672038 CAAATCA-TGT-ATATATATCATGTA
1 CAAATCATTGTCATATATATCATGTA
* *
47672062 CAAATCATTTTCATATATCTCATGTA
1 CAAATCATTGTCATATATATCATGTA
47672088 AATACCTGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 2 0.09
26 13 0.59
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.40
Consensus pattern (26 bp):
CAAATCATTGTCATATATATCATGTA
Found at i:47672278 original size:25 final size:24
Alignment explanation
Indices: 47672245--47672331 Score: 88
Period size: 25 Copynumber: 3.5 Consensus size: 24
47672235 ACGAGCTGTA
47672245 AATGGTAAGCTCCCCTTAGCTGAAT
1 AATGGTAAGCTCCCCTTAG-TGAAT
*
47672270 AATGGTAAGCTCCTCC-GAGTCGAAT
1 AATGGTAAGCTCC-CCTTAGT-GAAT
**
47672295 AATGGTAAGCT-CTTTTGAGTTGAAT
1 AATGGTAAGCTCCCCTT-AG-TGAAT
47672320 AATGGTAAGCTC
1 AATGGTAAGCTC
47672332 ATACGAGTTG
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
24 2 0.04
25 47 0.90
26 3 0.06
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (24 bp):
AATGGTAAGCTCCCCTTAGTGAAT
Found at i:47672339 original size:25 final size:25
Alignment explanation
Indices: 47672265--47672342 Score: 102
Period size: 25 Copynumber: 3.1 Consensus size: 25
47672255 TCCCCTTAGC
* *
47672265 TGAATAATGGTAAGCTCCTCCGAGT
1 TGAATAATGGTAAGCTCATACGAGT
* * **
47672290 CGAATAATGGTAAGCTCTTTTGAGT
1 TGAATAATGGTAAGCTCATACGAGT
47672315 TGAATAATGGTAAGCTCATACGAGT
1 TGAATAATGGTAAGCTCATACGAGT
47672340 TGA
1 TGA
47672343 GTATCGGTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (25 bp):
TGAATAATGGTAAGCTCATACGAGT
Found at i:47681577 original size:19 final size:20
Alignment explanation
Indices: 47681553--47681599 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 20
47681543 CTTTCAAGAC
47681553 TTTTTTTTA-ACTTCGTAA-A
1 TTTTTTTTATACTTCG-AATA
47681572 -TTTTTTTATACTTCGAATA
1 TTTTTTTTATACTTCGAATA
47681591 TGTTTTTTT
1 T-TTTTTTT
47681600 TTCAATTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
18 10 0.42
19 7 0.29
21 7 0.29
ACGTcount: A:0.21, C:0.09, G:0.06, T:0.64
Consensus pattern (20 bp):
TTTTTTTTATACTTCGAATA
Found at i:47685035 original size:28 final size:30
Alignment explanation
Indices: 47684998--47685080 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 30
47684988 AAATTTGAAG
47684998 GGGGTTGCTAAGTGCTGATTCCCCCG-AA-
1 GGGGTTGCTAAGTGCTGATTCCCCCGTAAT
*
47685026 GGGGTTGCTAAGTGATGATT-CCCCGATTAATT
1 GGGGTTGCTAAGTGCTGATTCCCCCG--TAA-T
47685058 GGTGGTTGCTAAGTGCTGATTCC
1 GG-GGTTGCTAAGTGCTGATTCC
47685081 ACCATATCTT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
27 5 0.11
28 19 0.41
30 2 0.04
32 2 0.04
33 17 0.37
34 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.31
Consensus pattern (30 bp):
GGGGTTGCTAAGTGCTGATTCCCCCGTAAT
Found at i:47685071 original size:103 final size:103
Alignment explanation
Indices: 47684893--47685125 Score: 369
Period size: 103 Copynumber: 2.3 Consensus size: 103
47684883 TTGAATAAAA
* * * * *
47684893 AAGGGGGTTGCTAAGTGCTGATTCCCCCTAGGGGTTGCTAAGTGCTGATTCTCCTATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGATGATTCCCCGATTAATTGGT
*
47684958 GGTTGCTAAGTGCTGATTCCACCATAT-TTTAAATTTG
66 GGTTGCTAAGTGCTGATTCCACCATATCTTTAAATGTG
47684995 AAGGGGGTTGCTAAGTGCTGATTCCCCCGAAGGGGTTGCTAAGTGATGATTCCCCGATTAATTGG
1 AAGGGGGTTGCTAAGTGCTGATTCCCCC-AAGGGGTTGCTAAGTGATGATTCCCCGATTAATTGG
*
47685060 TGGTTGCTAAGTGCTGATTCCACCATATCTTTGAATGTG
65 TGGTTGCTAAGTGCTGATTCCACCATATCTTTAAATGTG
* *
47685099 AAAGGGGTTGCTAAGTGCTAATTCCCC
1 AAGGGGGTTGCTAAGTGCTGATTCCCC
47685126 GAATCACTGG
Statistics
Matches: 120, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
102 28 0.23
103 59 0.49
104 33 0.28
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (103 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGATGATTCCCCGATTAATTGGT
GGTTGCTAAGTGCTGATTCCACCATATCTTTAAATGTG
Found at i:47703284 original size:15 final size:15
Alignment explanation
Indices: 47703264--47703300 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
47703254 AAAGAGATTG
47703264 AAAAGAAGAAAAAGA
1 AAAAGAAGAAAAAGA
47703279 AAAAGAAGAAAAAGA
1 AAAAGAAGAAAAAGA
*
47703294 GAAAGAA
1 AAAAGAA
47703301 TTTGAGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (15 bp):
AAAAGAAGAAAAAGA
Found at i:47720231 original size:28 final size:28
Alignment explanation
Indices: 47720191--47720372 Score: 330
Period size: 28 Copynumber: 6.5 Consensus size: 28
47720181 TAAATTGTAC
47720191 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
47720219 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
47720247 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
47720275 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
47720303 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
47720331 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
47720358 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47720373 GACTTAATAT
Statistics
Matches: 152, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
27 24 0.16
28 128 0.84
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:47726095 original size:17 final size:19
Alignment explanation
Indices: 47726060--47726096 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
47726050 TCTATAATCC
47726060 AAGCATTAAGTACAATATA
1 AAGCATTAAGTACAATATA
47726079 AAGCATTAAG-A-AATATA
1 AAGCATTAAGTACAATATA
47726096 A
1 A
47726097 TTATGGAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 1 0.06
19 10 0.56
ACGTcount: A:0.57, C:0.08, G:0.11, T:0.24
Consensus pattern (19 bp):
AAGCATTAAGTACAATATA
Found at i:47729326 original size:41 final size:41
Alignment explanation
Indices: 47729235--47729379 Score: 175
Period size: 41 Copynumber: 3.6 Consensus size: 41
47729225 AGGCTAAGCG
* **** *
47729235 CCTAGCAGGCTAAATGCCGGTGA-ATTTTTCAGACTATAAA
1 CCTAGCAGGCTAAGTGCCGGTGATAGGAATCAGGCTATAAA
* * *
47729275 TCTAGCAGGCTAAGTGCCGGTGATCGGAATCAGGTTATAAA
1 CCTAGCAGGCTAAGTGCCGGTGATAGGAATCAGGCTATAAA
* * *
47729316 CCTAGCAGGCTACGTGCCGGTGATATGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATAGGAATCAGGCTATAAA
47729357 CCTAGCAGGCTAAGTGCCGGTGA
1 CCTAGCAGGCTAAGTGCCGGTGA
47729380 ATATGTTAAA
Statistics
Matches: 88, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 21 0.24
41 67 0.76
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATAGGAATCAGGCTATAAA
Found at i:47733445 original size:43 final size:44
Alignment explanation
Indices: 47733394--47733678 Score: 185
Period size: 43 Copynumber: 6.6 Consensus size: 44
47733384 GTTTATATGG
*
47733394 AAAAATGCCGCTAGAGAACATGACCTTTAGCGACG-TTTCTCAC
1 AAAAATGCCGCTAAAGAACATGACCTTTAGCGACGCTTTCTCAC
* * * *** *
47733437 AAAAATGCCGCTATAGAGCATGACC-TTAGTGGTTCTTT-TCCC
1 AAAAATGCCGCTAAAGAACATGACCTTTAGCGACGCTTTCTCAC
** * * *
47733479 TCAAATGTCGCTAAAGAACATGACCTTTAGCAGCAC-TTTTCCCAC
1 AAAAATGCCGCTAAAGAACATGACCTTTAGC-G-ACGCTTTCTCAC
* * * * *
47733524 AAAAAT--CACTATAGAACATGACCTTTAGTGGCGCTTT-TCCC
1 AAAAATGCCGCTAAAGAACATGACCTTTAGCGACGCTTTCTCAC
* * * ** *
47733565 AAAAATTCCACTAAAGAACATGACCTTTACCGGTGCTTT-TCCC
1 AAAAATGCCGCTAAAGAACATGACCTTTAGCGACGCTTTCTCAC
* * ** *
47733608 ACAAAA-GCCACTAAAGAACACGACCTTTAGCGGTGCTTT-TCCC
1 A-AAAATGCCGCTAAAGAACATGACCTTTAGCGACGCTTTCTCAC
* * *
47733651 ACAAACGCCACTAAAGAACATGACCTTT
1 AAAAATGCCGCTAAAGAACATGACCTTT
47733679 CCCCACAAAC
Statistics
Matches: 196, Mismatches: 36, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
41 9 0.05
42 35 0.18
43 138 0.70
44 8 0.04
45 6 0.03
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (44 bp):
AAAAATGCCGCTAAAGAACATGACCTTTAGCGACGCTTTCTCAC
Found at i:47733592 original size:86 final size:84
Alignment explanation
Indices: 47733394--47733678 Score: 311
Period size: 86 Copynumber: 3.3 Consensus size: 84
47733384 GTTTATATGG
* * * * * *
47733394 AAAAATGCCGCTAGAGAACATGACCTTTAGCGACGTTTCTCACAAAAATGCCGCTATAGAGCATG
1 AAAAATGCCACTAAAGAACATGACCTTTAGCGACTTTTCCCACAAAAAT--CACTATAGAACATG
*
47733459 ACC-TTAGTGGTTCTTTTCCC
64 ACCTTTAGTGGTGCTTTTCCC
** * *
47733479 TCAAATGTCGCTAAAGAACATGACCTTTAGCAGCACTTTTCCCACAAAAATCACTATAGAACATG
1 AAAAATGCCACTAAAGAACATGACCTTTAGC-G-ACTTTTCCCACAAAAATCACTATAGAACATG
*
47733544 ACCTTTAGTGGCGCTTTTCCC
64 ACCTTTAGTGGTGCTTTTCCC
* * * ** * *
47733565 AAAAATTCCACTAAAGAACATGACCTTTACCGGTGCTTTTCCCACAAAAGCCACTAAAGAACACG
1 AAAAATGCCACTAAAGAACATGACCTTTAGC-G-ACTTTTCCCACAAAAATCACTATAGAACATG
*
47733630 ACCTTTAGCGGTGCTTTTCCC
64 ACCTTTAGTGGTGCTTTTCCC
* *
47733651 ACAAACGCCACTAAAGAACATGACCTTT
1 AAAAATGCCACTAAAGAACATGACCTTT
47733679 CCCCACAAAC
Statistics
Matches: 169, Mismatches: 28, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
85 42 0.25
86 112 0.66
87 15 0.09
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (84 bp):
AAAAATGCCACTAAAGAACATGACCTTTAGCGACTTTTCCCACAAAAATCACTATAGAACATGAC
CTTTAGTGGTGCTTTTCCC
Found at i:47733647 original size:129 final size:128
Alignment explanation
Indices: 47733408--47733678 Score: 319
Period size: 129 Copynumber: 2.1 Consensus size: 128
47733398 ATGCCGCTAG
* * * ** *
47733408 AGAACATGACCTTTAGCGACGTTTCTCACAAAAATGCCGCTATAGAGCATGACCTTAGTGGTTCT
1 AGAACATGACCTTTAGCGACGTTTCTCACAAAAATGCCACTAAAGAACATGACCTTACCGGTGCT
* * * * * * *
47733473 TTTCCCTCAAATGTCGCTAAAGAACATGACCTTTAGCAGCACTTTTCCCACAAAAATCACTAT
66 TTTCCCACAAAAGCCACTAAAGAACACGACCTTTAGCAGCACTTTTCCCACAAAAACCACTAA
* * * *
47733536 AGAACATGACCTTTAGTGGCGCTTT-TCCCAAAAATTCCACTAAAGAACATGACCTTTACCGGTG
1 AGAACATGACCTTTAGCGACG-TTTCTCACAAAAATGCCACTAAAGAACATGACC-TTACCGGTG
* ** **
47733600 CTTTTCCCACAAAAGCCACTAAAGAACACGACCTTTAGCGGTGCTTTTCCCACAAACGCCACTAA
64 CTTTTCCCACAAAAGCCACTAAAGAACACGACCTTTAGCAGCACTTTTCCCACAAAAACCACTAA
47733665 AGAACATGACCTTT
1 AGAACATGACCTTT
47733679 CCCCACAAAC
Statistics
Matches: 119, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
128 43 0.36
129 76 0.64
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (128 bp):
AGAACATGACCTTTAGCGACGTTTCTCACAAAAATGCCACTAAAGAACATGACCTTACCGGTGCT
TTTCCCACAAAAGCCACTAAAGAACACGACCTTTAGCAGCACTTTTCCCACAAAAACCACTAA
Found at i:47733696 original size:31 final size:32
Alignment explanation
Indices: 47733643--47733705 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
47733633 TTTAGCGGTG
*
47733643 CTTTTCCCACAAACGCCACTAAAGAACATGAC
1 CTTTCCCCACAAACGCCACTAAAGAACATGAC
47733675 CTTTCCCCACAAACGCC-CTAAAGAACATGAC
1 CTTTCCCCACAAACGCCACTAAAGAACATGAC
47733706 TTTTAGCGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 14 0.47
32 16 0.53
ACGTcount: A:0.37, C:0.37, G:0.10, T:0.17
Consensus pattern (32 bp):
CTTTCCCCACAAACGCCACTAAAGAACATGAC
Found at i:47739623 original size:9 final size:9
Alignment explanation
Indices: 47739609--47739829 Score: 79
Period size: 9 Copynumber: 26.6 Consensus size: 9
47739599 TATTTATGCA
47739609 TTATGTAAG
1 TTATGTAAG
47739618 TTATGTAAG
1 TTATGTAAG
* *
47739627 TTATATAGG
1 TTATGTAAG
*
47739636 TTACGTAAG
1 TTATGTAAG
47739645 TTA--TAA-
1 TTATGTAAG
*
47739651 -TATGATATG
1 TTATG-TAAG
* * *
47739660 ATATAT-AT
1 TTATGTAAG
47739668 TTATGT-A-
1 TTATGTAAG
47739675 TTATGTAAG
1 TTATGTAAG
47739684 TTATGTAAG
1 TTATGTAAG
* *
47739693 TTATATAGG
1 TTATGTAAG
*
47739702 TTACGTAAG
1 TTATGTAAG
47739711 TTA--TAA-
1 TTATGTAAG
*
47739717 -TATGATATG
1 TTATG-TAAG
* * *
47739726 ATATAT-AT
1 TTATGTAAG
47739734 TTATGT-A-
1 TTATGTAAG
47739741 TTATGTAAG
1 TTATGTAAG
47739750 TTATGTAAG
1 TTATGTAAG
* *
47739759 TTATATAGG
1 TTATGTAAG
*
47739768 TTACGTAAG
1 TTATGTAAG
47739777 TTA--TAA-
1 TTATGTAAG
*
47739783 -TATGATATG
1 TTATG-TAAG
* * *
47739792 ATATAT-AT
1 TTATGTAAG
47739800 TTATGT-A-
1 TTATGTAAG
47739807 TTATGTAAG
1 TTATGTAAG
47739816 TTATGTAAG
1 TTATGTAAG
47739825 TTATG
1 TTATG
47739830 ATCCAAAGTT
Statistics
Matches: 158, Mismatches: 33, Indels: 42
0.68 0.14 0.18
Matches are distributed among these distances:
5 6 0.04
7 27 0.17
8 24 0.15
9 92 0.58
10 9 0.06
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:47739638 original size:18 final size:17
Alignment explanation
Indices: 47739616--47739828 Score: 105
Period size: 18 Copynumber: 12.9 Consensus size: 17
47739606 GCATTATGTA
47739616 AGTTATGTAAGTTATAT
1 AGTTATGTAAGTTATAT
*
47739633 AGGTTACGTAAGTTATA-
1 A-GTTATGTAAGTTATAT
* *
47739650 A--TATGATATGATATAT
1 AGTTATG-TAAGTTATAT
* *
47739666 ATTTATGT-A-TTATGT
1 AGTTATGTAAGTTATAT
47739681 AAGTTATGTAAGTTATAT
1 -AGTTATGTAAGTTATAT
*
47739699 AGGTTACGTAAGTTATA-
1 A-GTTATGTAAGTTATAT
* *
47739716 A--TATGATATGATATAT
1 AGTTATG-TAAGTTATAT
* *
47739732 ATTTATGT-A-TTATGT
1 AGTTATGTAAGTTATAT
47739747 AAGTTATGTAAGTTATAT
1 -AGTTATGTAAGTTATAT
*
47739765 AGGTTACGTAAGTTATA-
1 A-GTTATGTAAGTTATAT
* *
47739782 A--TATGATATGATATAT
1 AGTTATG-TAAGTTATAT
* *
47739798 ATTTATGT-A-TTATGT
1 AGTTATGTAAGTTATAT
47739813 AAGTTATGTAAGTTAT
1 -AGTTATGTAAGTTAT
47739829 GATCCAAAGT
Statistics
Matches: 146, Mismatches: 26, Indels: 47
0.67 0.12 0.21
Matches are distributed among these distances:
14 9 0.06
15 33 0.23
16 24 0.16
17 12 0.08
18 68 0.47
ACGTcount: A:0.36, C:0.01, G:0.17, T:0.46
Consensus pattern (17 bp):
AGTTATGTAAGTTATAT
Found at i:47739666 original size:66 final size:66
Alignment explanation
Indices: 47739585--47739828 Score: 470
Period size: 66 Copynumber: 3.7 Consensus size: 66
47739575 TTATGTAAGT
* *
47739585 TATGATTTGATATATATTTATGCATTATGTAAGTTATGTAAGTTATATAGGTTACGTAAGTTATA
1 TATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATATAGGTTACGTAAGTTATA
47739650 A
66 A
47739651 TATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATATAGGTTACGTAAGTTATA
1 TATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATATAGGTTACGTAAGTTATA
47739716 A
66 A
47739717 TATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATATAGGTTACGTAAGTTATA
1 TATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATATAGGTTACGTAAGTTATA
47739782 A
66 A
47739783 TATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTAT
1 TATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTAT
47739829 GATCCAAAGT
Statistics
Matches: 176, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 176 1.00
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.46
Consensus pattern (66 bp):
TATGATATGATATATATTTATGTATTATGTAAGTTATGTAAGTTATATAGGTTACGTAAGTTATA
A
Found at i:47739898 original size:13 final size:13
Alignment explanation
Indices: 47739880--47739906 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
47739870 TGATTATCAT
47739880 CTTTAAATTTTAA
1 CTTTAAATTTTAA
47739893 CTTTAAATTTTAA
1 CTTTAAATTTTAA
47739906 C
1 C
47739907 CCTTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:47741962 original size:22 final size:23
Alignment explanation
Indices: 47741937--47741988 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
47741927 TTAGTTATGG
*
47741937 AATGGTTTTGG-TTTTGGTACGA
1 AATGGTTTGGGTTTTTGGTACGA
* *
47741959 AATGGTATGGGTTTTTGGTATGA
1 AATGGTTTGGGTTTTTGGTACGA
47741982 AATGGTT
1 AATGGTT
47741989 AATGGCTCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 9 0.36
23 16 0.64
ACGTcount: A:0.21, C:0.02, G:0.33, T:0.44
Consensus pattern (23 bp):
AATGGTTTGGGTTTTTGGTACGA
Found at i:47745223 original size:76 final size:75
Alignment explanation
Indices: 47745130--47745327 Score: 240
Period size: 76 Copynumber: 2.6 Consensus size: 75
47745120 ACGCGCTTTG
* *
47745130 GGGAAAAGAATTAGGGATTTTGGGGAGGGGGAAC-GAATTTGGGGAAAAGAAGTTGGGG-AAAAA
1 GGGAAAAAAATTAGGGATTTTGGGGAGGGGGAACTG-ATTTGGGGAAAAGAAATTGGGGAAAAAA
47745193 AGAAAGGGAATT
65 AGAAAGGG-ATT
* * * * *
47745205 GGGAAAAAAAGTTGGGGATTTCGGGGAGGGGGAACTGGTTTGGTGAAAATAAATTGGGGAAAAAA
1 GGGAAAAAAA-TTAGGGATTTTGGGGAGGGGGAACTGATTTGGGGAAAAGAAATTGGGGAAAAAA
47745270 AGAAAGGGATT
65 AGAAAGGGATT
* ** * *
47745281 GGGAAAACAATTAGGGATTTTAAGG-GGTGGAACTGATTTAGGGAAAA
1 GGGAAAAAAATTAGGGATTTTGGGGAGGGGGAACTGATTTGGGGAAAA
47745328 AATTAGGGAT
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
74 18 0.17
75 20 0.19
76 52 0.50
77 14 0.13
ACGTcount: A:0.39, C:0.03, G:0.39, T:0.20
Consensus pattern (75 bp):
GGGAAAAAAATTAGGGATTTTGGGGAGGGGGAACTGATTTGGGGAAAAGAAATTGGGGAAAAAAA
GAAAGGGATT
Found at i:47749559 original size:21 final size:22
Alignment explanation
Indices: 47749523--47749563 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
47749513 CAATTCTACC
*
47749523 TTTATTTTCTGATTTGAATGGT
1 TTTATTTTCAGATTTGAATGGT
47749545 TTTATTTT-AGATTTGAATG
1 TTTATTTTCAGATTTGAATG
47749564 TCCAATCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.22, C:0.02, G:0.17, T:0.59
Consensus pattern (22 bp):
TTTATTTTCAGATTTGAATGGT
Found at i:47752144 original size:11 final size:11
Alignment explanation
Indices: 47752128--47752155 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
47752118 CTCAAGATCG
47752128 TGTTGCCTTCA
1 TGTTGCCTTCA
47752139 TGTTGCCTTCA
1 TGTTGCCTTCA
47752150 TGTTGC
1 TGTTGC
47752156 AACCTTACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.07, C:0.25, G:0.21, T:0.46
Consensus pattern (11 bp):
TGTTGCCTTCA
Found at i:47753387 original size:16 final size:16
Alignment explanation
Indices: 47753363--47753405 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
47753353 GGAAGATGAT
*
47753363 GTTTTATTTTAATTAA
1 GTTTAATTTTAATTAA
47753379 GTTTAATTTTAATTAA
1 GTTTAATTTTAATTAA
47753395 -TTATAATTTTA
1 GTT-TAATTTTA
47753406 CCCTTATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 2 0.08
16 23 0.92
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (16 bp):
GTTTAATTTTAATTAA
Found at i:47756695 original size:10 final size:9
Alignment explanation
Indices: 47756678--47756728 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 9
47756668 TAACGATCTT
47756678 AATGAGCTG
1 AATGAGCTG
47756687 AATTGAGCTCG
1 AA-TGAGCT-G
47756698 AATGAGCT-
1 AATGAGCTG
47756706 AACTTGAGCTCG
1 AA--TGAGCT-G
47756718 AATGAGCTG
1 AATGAGCTG
47756727 AA
1 AA
47756729 CCACATGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
8 2 0.06
9 5 0.14
10 24 0.67
11 3 0.08
12 2 0.06
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (9 bp):
AATGAGCTG
Found at i:47756701 original size:20 final size:21
Alignment explanation
Indices: 47756678--47756729 Score: 90
Period size: 20 Copynumber: 2.6 Consensus size: 21
47756668 TAACGATCTT
47756678 AATGAGCTGAA-TTGAGCTCG
1 AATGAGCTGAACTTGAGCTCG
47756698 AATGAGCT-AACTTGAGCTCG
1 AATGAGCTGAACTTGAGCTCG
47756718 AATGAGCTGAAC
1 AATGAGCTGAAC
47756730 CACATGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 2 0.07
20 25 0.83
21 3 0.10
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (21 bp):
AATGAGCTGAACTTGAGCTCG
Found at i:47764163 original size:40 final size:40
Alignment explanation
Indices: 47764132--47764222 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
47764122 GGACTAAGAT
* *
47764132 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
47764172 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
47764212 CCGAAGGCATT
1 CCGAAGGCATT
47764223 GTATGAGTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 2 0.04
40 46 0.96
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
Found at i:47767973 original size:634 final size:634
Alignment explanation
Indices: 47766758--47768028 Score: 2398
Period size: 634 Copynumber: 2.0 Consensus size: 634
47766748 AATGAACGTC
*
47766758 GAGACAGGACGAAATGCCGATATTGCGGTAAATGGCATTCGGGGAGTTGTAGATTCCCTGACCGC
1 GAGACAGAACGAAATGCCGATATTGCGGTAAATGGCATTCGGGGAGTTGTAGATTCCCTGACCGC
* * *
47766823 TCCTGTTACAAGTGCGGATCAGTTGACCACTTCATTAAAGATTGCCCGAGGTTGTCGGGACAGAA
66 TCCTGTTACAAATGCGGATCAGTGGACCACTTCATTAAAGATTGCCCGAGGTTGTCGGAACAGAA
* *
47766888 TGCAAATCAGAGTGGGAGACCGGGTGCTACCACTGCTCGAGGTAGACCATCTGGAAATACGGGCA
131 TGAAAATCAGAGTGGGAAACCGGGTGCTACCACTGCTCGAGGTAGACCATCTGGAAATACGGGCA
47766953 ATGCTAGTGGTGGTCAGAGAGGATCTAGAGATGATATAACCAGATCCGAAGCCCGTGCGCCTGCT
196 ATGCTAGTGGTGGTCAGAGAGGATCTAGAGATGATATAACCAGATCCGAAGCCCGTGCGCCTGCT
47767018 AGAGCTTATGCTATACGTGCCCGCGAGGATGCTTCTTCGCCTGATGTTATTACCGGTACATTCAC
261 AGAGCTTATGCTATACGTGCCCGCGAGGATGCTTCTTCGCCTGATGTTATTACCGGTACATTCAC
47767083 CCTCTTTGATACTAATGTAATTGCTTTGATTGACCCCGGTTCTACTCATTCCTACATATGTGAAA
326 CCTCTTTGATACTAATGTAATTGCTTTGATTGACCCCGGTTCTACTCATTCCTACATATGTGAAA
47767148 CCTTAGCATCCAGTAAGACTTTACCTATTGAGTCTACTGAGTTCGTAATTCGGGTGTCAAATCCC
391 CCTTAGCATCCAGTAAGACTTTACCTATTGAGTCTACTGAGTTCGTAATTCGGGTGTCAAATCCC
47767213 TTGGGTCGTTACGTGCTTGTCGACAAAGTGTGTAAGAAATGTCCCCTGGAAATTCGAGGTTCCTG
456 TTGGGTCGTTACGTGCTTGTCGACAAAGTGTGTAAGAAATGTCCCCTGGAAATTCGAGGTTCCTG
47767278 TTTTCCGGCGGACTTGATGCTTTTGCCGTTTGATGAATTTGATGTTATCCTTGGGTTGGATTGGT
521 TTTTCCGGCGGACTTGATGCTTTTGCCGTTTGATGAATTTGATGTTATCCTTGGGTTGGATTGGT
47767343 TGACCGCGCATGATGCGATTGTGAATTGCAAGAGCAAGACTATTGATTT
586 TGACCGCGCATGATGCGATTGTGAATTGCAAGAGCAAGACTATTGATTT
* * *
47767392 GAGACAGAACGGAATGTCGATATTGCGGTAAATGGCATTCGGGGAGTTGTAGATTTCCTGACCGC
1 GAGACAGAACGAAATGCCGATATTGCGGTAAATGGCATTCGGGGAGTTGTAGATTCCCTGACCGC
**
47767457 TCCTGTTACAAATGCGGATCAGTGGACCACTTCATTAAAGATTGCCCGAGGTTGTTTGAACAGAA
66 TCCTGTTACAAATGCGGATCAGTGGACCACTTCATTAAAGATTGCCCGAGGTTGTCGGAACAGAA
*
47767522 TGAAAATCAGAGTGGGAAACCGGGTGCTACCACTGCTCGAGGTAGACCATCTGGAAATATGGGCA
131 TGAAAATCAGAGTGGGAAACCGGGTGCTACCACTGCTCGAGGTAGACCATCTGGAAATACGGGCA
*
47767587 ATGCTGGTGGTGGTCAGAGAGGATCTAGAGATGATATAACCAGATCCGAAGCCCGTGCGCCTGCT
196 ATGCTAGTGGTGGTCAGAGAGGATCTAGAGATGATATAACCAGATCCGAAGCCCGTGCGCCTGCT
47767652 AGAGCTTATGCTATACGTGCCCGCGAGGATGCTTCTTCGCCTGATGTTATTACCGGTACATTCAC
261 AGAGCTTATGCTATACGTGCCCGCGAGGATGCTTCTTCGCCTGATGTTATTACCGGTACATTCAC
* *
47767717 TCTCTTTGATACTAATGTAATTGCTTTGATTGACCCCGGTTCTACTCATTCTTACATATGTGAAA
326 CCTCTTTGATACTAATGTAATTGCTTTGATTGACCCCGGTTCTACTCATTCCTACATATGTGAAA
47767782 CCTTAGCATCCAGTAAGACTTTACCTATTGAGTCTACTGAGTTCGTAATTCGGGTGTCAAATCCC
391 CCTTAGCATCCAGTAAGACTTTACCTATTGAGTCTACTGAGTTCGTAATTCGGGTGTCAAATCCC
47767847 TTGGGTCGTTACGTGCTTGTCGACAAAGTGTGTAAGAAATGTCCCCTGGAAATTCGAGGTTCCTG
456 TTGGGTCGTTACGTGCTTGTCGACAAAGTGTGTAAGAAATGTCCCCTGGAAATTCGAGGTTCCTG
*
47767912 TTTTCCGGCGGACTTGATGCTTTTGCCGTTTGATGAATTTGATGTTATCCTTGGTTTGGATTGGT
521 TTTTCCGGCGGACTTGATGCTTTTGCCGTTTGATGAATTTGATGTTATCCTTGGGTTGGATTGGT
47767977 TGACCGCGCATGATGCGATTGTGAATTGCAAGAGCAAGACTATTGATTT
586 TGACCGCGCATGATGCGATTGTGAATTGCAAGAGCAAGACTATTGATTT
47768026 GAG
1 GAG
47768029 GTGCGCAAAT
Statistics
Matches: 621, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
634 621 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (634 bp):
GAGACAGAACGAAATGCCGATATTGCGGTAAATGGCATTCGGGGAGTTGTAGATTCCCTGACCGC
TCCTGTTACAAATGCGGATCAGTGGACCACTTCATTAAAGATTGCCCGAGGTTGTCGGAACAGAA
TGAAAATCAGAGTGGGAAACCGGGTGCTACCACTGCTCGAGGTAGACCATCTGGAAATACGGGCA
ATGCTAGTGGTGGTCAGAGAGGATCTAGAGATGATATAACCAGATCCGAAGCCCGTGCGCCTGCT
AGAGCTTATGCTATACGTGCCCGCGAGGATGCTTCTTCGCCTGATGTTATTACCGGTACATTCAC
CCTCTTTGATACTAATGTAATTGCTTTGATTGACCCCGGTTCTACTCATTCCTACATATGTGAAA
CCTTAGCATCCAGTAAGACTTTACCTATTGAGTCTACTGAGTTCGTAATTCGGGTGTCAAATCCC
TTGGGTCGTTACGTGCTTGTCGACAAAGTGTGTAAGAAATGTCCCCTGGAAATTCGAGGTTCCTG
TTTTCCGGCGGACTTGATGCTTTTGCCGTTTGATGAATTTGATGTTATCCTTGGGTTGGATTGGT
TGACCGCGCATGATGCGATTGTGAATTGCAAGAGCAAGACTATTGATTT
Found at i:47772686 original size:40 final size:40
Alignment explanation
Indices: 47772602--47772785 Score: 232
Period size: 40 Copynumber: 4.6 Consensus size: 40
47772592 TTGAATGCTG
* *
47772602 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
** *
47772641 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACAAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* *
47772682 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
47772722 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
47772762 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
47772786 GTATGAGTTA
Statistics
Matches: 129, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
40 116 0.90
41 12 0.09
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:47775957 original size:58 final size:57
Alignment explanation
Indices: 47775895--47776088 Score: 221
Period size: 58 Copynumber: 3.3 Consensus size: 57
47775885 AGCTTCAGCA
*
47775895 ATCAAATATGAAAAGGTATAGCT-TCGACTATCGATTATGAAAAGGGATGGTGACGACC
1 ATCAAATATGAAAAGG-ATAG-TGTCGACCATCGATTATGAAAAGGGATGGTGACGACC
* * * *
47775953 ATCAATTATGAAAAGGGATGGTGACGACCATCAATTATGAAAAGGGATGGTGACGACC
1 ATCAAATATGAAAA-GGATAGTGTCGACCATCGATTATGAAAAGGGATGGTGACGACC
* * *
47776011 ATCAACTATGAAAACGGATAGTGATGACGACCATCGATTAATGAAAAGGGATGGT-TCTTACC
1 ATCAAATATGAAAA-GGATAGTG-T--CGACCATCGATT-ATGAAAAGGGATGGTGAC-GACC
47776073 ATCAAATATGAAAAGG
1 ATCAAATATGAAAAGG
47776089 GACTGTTAAA
Statistics
Matches: 116, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
57 1 0.01
58 68 0.59
59 2 0.02
61 14 0.12
62 31 0.27
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (57 bp):
ATCAAATATGAAAAGGATAGTGTCGACCATCGATTATGAAAAGGGATGGTGACGACC
Found at i:47776044 original size:32 final size:29
Alignment explanation
Indices: 47775919--47776090 Score: 220
Period size: 29 Copynumber: 5.8 Consensus size: 29
47775909 GGTATAGCTT
* *
47775919 CGACTATCGATTATGAAAAGGGATGGTGA
1 CGACCATCAATTATGAAAAGGGATGGTGA
47775948 CGACCATCAATTATGAAAAGGGATGGTGA
1 CGACCATCAATTATGAAAAGGGATGGTGA
47775977 CGACCATCAATTATGAAAAGGGATGGTGA
1 CGACCATCAATTATGAAAAGGGATGGTGA
* *
47776006 CGACCATCAACTATGAAAACGGATAGTGATGA
1 CGACCATCAATTATGAAAAGGGAT-G-G-TGA
* *
47776038 CGACCATCGATTAATGAAAAGGGATGGT-T
1 CGACCATCAATT-ATGAAAAGGGATGGTGA
* *
47776067 CTTACCATCAAATATGAAAAGGGA
1 C-GACCATCAATTATGAAAAGGGA
47776091 CTGTTAAAGT
Statistics
Matches: 127, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
29 90 0.71
30 10 0.08
31 2 0.02
32 14 0.11
33 11 0.09
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.22
Consensus pattern (29 bp):
CGACCATCAATTATGAAAAGGGATGGTGA
Found at i:47780282 original size:22 final size:22
Alignment explanation
Indices: 47780251--47780362 Score: 101
Period size: 22 Copynumber: 5.4 Consensus size: 22
47780241 ATACCCACAA
*
47780251 TAAGCTTGAATAACACTGGCAC
1 TAAGCCTGAATAACACTGGCAC
**
47780273 TAAGCCTGAATAACACCAGCAC
1 TAAGCCTGAATAACACTGGCAC
* * *
47780295 TAAGCTTG-CT-AGACT----C
1 TAAGCCTGAATAACACTGGCAC
* *
47780311 TAAGCCTGAACAACACCGGCAC
1 TAAGCCTGAATAACACTGGCAC
*
47780333 TAAGCCTGAATAGCACTGGCAC
1 TAAGCCTGAATAACACTGGCAC
47780355 TAAGCCTG
1 TAAGCCTG
47780363 CTAGGCACTA
Statistics
Matches: 69, Mismatches: 15, Indels: 12
0.72 0.16 0.12
Matches are distributed among these distances:
16 8 0.12
18 3 0.04
20 3 0.04
21 1 0.01
22 54 0.78
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.19
Consensus pattern (22 bp):
TAAGCCTGAATAACACTGGCAC
Found at i:47780344 original size:60 final size:60
Alignment explanation
Indices: 47780251--47780380 Score: 179
Period size: 60 Copynumber: 2.2 Consensus size: 60
47780241 ATACCCACAA
* * * * *
47780251 TAAGCTTGAATAACACTGGCACTAAGCCTGAATAACACCAGCACTAAGCTTGCTAGACTC
1 TAAGCCTGAACAACACCGGCACTAAGCCTGAATAACACCAGCACTAAGCCTGCTAGACAC
* ** *
47780311 TAAGCCTGAACAACACCGGCACTAAGCCTGAATAGCACTGGCACTAAGCCTGCTAGGCAC
1 TAAGCCTGAACAACACCGGCACTAAGCCTGAATAACACCAGCACTAAGCCTGCTAGACAC
47780371 TAAGCCTGAA
1 TAAGCCTGAA
47780381 TAATAGTATG
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.18
Consensus pattern (60 bp):
TAAGCCTGAACAACACCGGCACTAAGCCTGAATAACACCAGCACTAAGCCTGCTAGACAC
Found at i:47784680 original size:27 final size:27
Alignment explanation
Indices: 47784650--47784702 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
47784640 TGTCTGAAAT
* * *
47784650 ACCCCTATAGTGTAGAATGACCGTAAC
1 ACCCCTATAGGGTAAAATAACCGTAAC
*
47784677 ACCCCTGTAGGGTAAAATAACCGTAA
1 ACCCCTATAGGGTAAAATAACCGTAA
47784703 TGCCCTGGTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.21
Consensus pattern (27 bp):
ACCCCTATAGGGTAAAATAACCGTAAC
Found at i:47784818 original size:24 final size:23
Alignment explanation
Indices: 47784767--47784824 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 23
47784757 TTTGTGGTTA
*
47784767 AATGACTGATTTTTTGTGTTTGG
1 AATGACTGATTTTCTGTGTTTGG
*
47784790 TATGACTGATTTGTCTGTGATTT-G
1 AATGACTGATTT-TCTGTG-TTTGG
*
47784814 AATGATTGATT
1 AATGACTGATT
47784825 CTGAGCATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 11 0.38
24 15 0.52
25 3 0.10
ACGTcount: A:0.21, C:0.05, G:0.24, T:0.50
Consensus pattern (23 bp):
AATGACTGATTTTCTGTGTTTGG
Found at i:47784928 original size:27 final size:27
Alignment explanation
Indices: 47784888--47784947 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
47784878 ATGGAGGAAG
47784888 TACTG-TACTAGTGGCTCT-GCCACA-A
1 TACTGTTACTAGTGGCT-TGGCCACATA
*
47784913 TCACTGTTACTGGTGGCTTGGCCACATA
1 T-ACTGTTACTAGTGGCTTGGCCACATA
47784941 TACTGTT
1 TACTGTT
47784948 GATGGCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
25 1 0.03
26 5 0.17
27 22 0.73
28 2 0.07
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (27 bp):
TACTGTTACTAGTGGCTTGGCCACATA
Found at i:47785026 original size:32 final size:32
Alignment explanation
Indices: 47784970--47785203 Score: 213
Period size: 32 Copynumber: 7.4 Consensus size: 32
47784960 GCTACGATGC
* ** *
47784970 TACTGATGGCTTTGTTCCGGTCATAGTACTGT
1 TACTGATGGCTTTGTGCCAATCATATTACTGT
* *
47785002 TACTAATGGCTTTGTGTCAATCATATTACTGT
1 TACTGATGGCTTTGTGCCAATCATATTACTGT
* * * *
47785034 TACTGGTGGCTATGTGCCGATCAT-TTCACTAT
1 TACTGATGGCTTTGTGCCAATCATATT-ACTGT
* * * * * *
47785066 TACTGATGGCTATGTGTCGATAATATCACTGC
1 TACTGATGGCTTTGTGCCAATCATATTACTGT
* * * *
47785098 TACT-ATGGCTTTGTACCGATCATGTTACCGT
1 TACTGATGGCTTTGTGCCAATCATATTACTGT
* * * *
47785129 TGCTGATGGCTGTGTGCCAATCATATCACTGC
1 TACTGATGGCTTTGTGCCAATCATATTACTGT
47785161 TACTGATGGCTTTGTGCCAATCATATTACTG-
1 TACTGATGGCTTTGTGCCAATCATATTACTGT
*
47785192 TACTTATGGCTT
1 TACTGATGGCTT
47785204 GTAGCCATTC
Statistics
Matches: 161, Mismatches: 38, Indels: 7
0.78 0.18 0.03
Matches are distributed among these distances:
31 35 0.22
32 125 0.78
33 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCAATCATATTACTGT
Found at i:47785139 original size:95 final size:94
Alignment explanation
Indices: 47784997--47785203 Score: 225
Period size: 95 Copynumber: 2.2 Consensus size: 94
47784987 CGGTCATAGT
** * * * *
47784997 ACTGTTACTAATGGCTTTGTGTCAATCATATTACTGTTACTGGTGGCTATGTGCCGATCATTTCA
1 ACTG-TACT-ATGGCTTTGTACCAATCATATTACCGTTACTGATGGCTATGTGCCAATCATATCA
* * *
47785062 CTATTACTGATGGCTATGTGTCGATAATATC
64 CTACTACTGATGGCTATGTGCCAATAATATC
* * * *
47785093 ACTGCTACTATGGCTTTGTACCGATCATGTTACCGTTGCTGATGGCTGTGTGCCAATCATATCAC
1 ACTG-TACTATGGCTTTGTACCAATCATATTACCGTTACTGATGGCTATGTGCCAATCATATCAC
* * * *
47785158 TGCTACTGATGGCTTTGTGCCAATCATATT
65 TACTACTGATGGCTATGTGCCAATAATATC
47785188 ACTGTACTTATGGCTT
1 ACTGTAC-TATGGCTT
47785204 GTAGCCATTC
Statistics
Matches: 92, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
94 3 0.03
95 81 0.88
96 8 0.09
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.38
Consensus pattern (94 bp):
ACTGTACTATGGCTTTGTACCAATCATATTACCGTTACTGATGGCTATGTGCCAATCATATCACT
ACTACTGATGGCTATGTGCCAATAATATC
Found at i:47787959 original size:22 final size:22
Alignment explanation
Indices: 47787931--47787984 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
47787921 CTTGCTAGGA
* *
47787931 ACTAAGCCTGAATAACAGCGAC
1 ACTAAGCCTGAACAACACCGAC
*
47787953 ACTAAGCCTGACCAACACCGAC
1 ACTAAGCCTGAACAACACCGAC
47787975 ACTAAGCCTG
1 ACTAAGCCTG
47787985 CTAGGCATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.37, C:0.33, G:0.17, T:0.13
Consensus pattern (22 bp):
ACTAAGCCTGAACAACACCGAC
Found at i:47791817 original size:39 final size:38
Alignment explanation
Indices: 47791757--47791893 Score: 102
Period size: 38 Copynumber: 3.6 Consensus size: 38
47791747 TTAAATATGT
* *
47791757 CTAAACTAGGACAT-ATATAAAACATGTATTTAAGATGAC
1 CTAAACTATGACATAAT-TAAAACAT-TATTAAAGATGAC
* *
47791796 CTAAACTATGACATAATTAAAAACCCTTATTAAAGATGAT
1 CTAAACTATGACATAATT-AAAA-CATTATTAAAGATGAC
* * * **
47791836 C-AGATTATGACATAATTAAAAC-TCATATTAATGATGTT
1 CTAAACTATGACATAATTAAAACAT--TATTAAAGATGAC
*
47791874 C-AAATTATGACATAATTAAA
1 CTAAACTATGACATAATTAAA
47791894 GACTTAAACT
Statistics
Matches: 84, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
36 1 0.01
37 1 0.01
38 34 0.40
39 28 0.33
40 18 0.21
41 2 0.02
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.31
Consensus pattern (38 bp):
CTAAACTATGACATAATTAAAACATTATTAAAGATGAC
Found at i:47791866 original size:38 final size:38
Alignment explanation
Indices: 47791783--47791893 Score: 132
Period size: 38 Copynumber: 2.9 Consensus size: 38
47791773 ATAAAACATG
* * * *
47791783 TATTTAAGATGACCTAAACTATGACATAATTAAAAACCCT
1 TATTAAAGATGATC-AAATTATGACATAATT-AAAACCCA
* *
47791823 TATTAAAGATGATCAGATTATGACATAATTAAAACTCA
1 TATTAAAGATGATCAAATTATGACATAATTAAAACCCA
* *
47791861 TATTAATGATGTTCAAATTATGACATAATTAAA
1 TATTAAAGATGATCAAATTATGACATAATTAAA
47791894 GACTTAAACT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 36 0.58
39 14 0.23
40 12 0.19
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (38 bp):
TATTAAAGATGATCAAATTATGACATAATTAAAACCCA
Found at i:47795597 original size:27 final size:26
Alignment explanation
Indices: 47795567--47795705 Score: 127
Period size: 27 Copynumber: 5.2 Consensus size: 26
47795557 TTACACTGTT
*
47795567 ATGACCAAAATACCTCCATAGGGTAAA
1 ATGACCGAAATACC-CCATAGGGTAAA
*
47795594 ATGACC-AAGATACCCCCATAGGGTAGA
1 ATGACCGAA-ATA-CCCCATAGGGTAAA
* * * *
47795621 ATAACTGAAATACCTCCATATGCTAAA
1 ATGACCGAAATACC-CCATAGGGTAAA
* *
47795648 ATGATCGAAATACCCCTATAGGGTAGA
1 ATGACCGAAATACCCC-ATAGGGTAAA
* *
47795675 ATGACCGTAATACCCCCTAAGGGTAAA
1 ATGACCGAAATACCCCAT-AGGGTAAA
47795702 ATGA
1 ATGA
47795706 TCTTTATACC
Statistics
Matches: 90, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
26 7 0.08
27 79 0.88
28 4 0.04
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.20
Consensus pattern (26 bp):
ATGACCGAAATACCCCATAGGGTAAA
Found at i:47795638 original size:54 final size:54
Alignment explanation
Indices: 47795574--47795707 Score: 164
Period size: 54 Copynumber: 2.5 Consensus size: 54
47795564 GTTATGACCA
*
47795574 AAATACCTCCATAGGGTAAAATGA-CCAAGATACCCCCATAGGGTAGAATAACTG
1 AAATACCTCCATAGGGTAAAATGATCCAA-ATACCCCCATAGGGTAGAATAACCG
* * * * *
47795628 AAATACCTCCATATGCTAAAATGATCGAAATACCCCTATAGGGTAGAATGACCG
1 AAATACCTCCATAGGGTAAAATGATCCAAATACCCCCATAGGGTAGAATAACCG
* *
47795682 TAATACC-CCCTAAGGGTAAAATGATC
1 AAATACCTCCAT-AGGGTAAAATGATC
47795708 TTTATACCCC
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 3 0.04
54 62 0.91
55 3 0.04
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.21
Consensus pattern (54 bp):
AAATACCTCCATAGGGTAAAATGATCCAAATACCCCCATAGGGTAGAATAACCG
Found at i:47797242 original size:22 final size:22
Alignment explanation
Indices: 47797199--47797247 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
47797189 TTACCTCTTG
**
47797199 CTTTTCTTTTTTTTTCAGTTTT
1 CTTTTCTTTTTTTCACAGTTTT
**
47797221 CTTTTCTTTTTTTCACTTTTTT
1 CTTTTCTTTTTTTCACAGTTTT
47797243 CTTTT
1 CTTTT
47797248 TCTTCTTTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.78
Consensus pattern (22 bp):
CTTTTCTTTTTTTCACAGTTTT
Found at i:47798808 original size:9 final size:9
Alignment explanation
Indices: 47798794--47798824 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
47798784 GGACTCATTC
47798794 TTCTAATTG
1 TTCTAATTG
47798803 TTCTAATTG
1 TTCTAATTG
47798812 TTCTAATTG
1 TTCTAATTG
47798821 TTCT
1 TTCT
47798825 TGTACAGGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.19, C:0.13, G:0.10, T:0.58
Consensus pattern (9 bp):
TTCTAATTG
Found at i:47802260 original size:29 final size:29
Alignment explanation
Indices: 47802204--47802260 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
47802194 ATGTATTTGA
* *
47802204 CCCTTAACTTTTCATTAATTATACATTTT
1 CCCTAAACTTTTCATTAATTACACATTTT
*
47802233 CCCTAAACTTTTACATTTATTACA-ATTT
1 CCCTAAACTTTT-CATTAATTACACATTT
47802261 AGTCCCTAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 15 0.62
30 9 0.38
ACGTcount: A:0.30, C:0.21, G:0.00, T:0.49
Consensus pattern (29 bp):
CCCTAAACTTTTCATTAATTACACATTTT
Found at i:47803154 original size:19 final size:19
Alignment explanation
Indices: 47803132--47803175 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
47803122 AAAAAATAAA
47803132 AAGAATGA-AATGAGAAATG
1 AAGAATGATAATGA-AAATG
*
47803151 AAGAATGATTATGAAAATG
1 AAGAATGATAATGAAAATG
47803170 AAGAAT
1 AAGAAT
47803176 AGAGGTGGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.57, C:0.00, G:0.23, T:0.20
Consensus pattern (19 bp):
AAGAATGATAATGAAAATG
Found at i:47804117 original size:17 final size:18
Alignment explanation
Indices: 47804080--47804133 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
47804070 CTTTCATTCC
*
47804080 ATAACATTTTCTAGTTT-A
1 ATAACATTTTCCA-TTTCA
47804098 ATAACA-TTTCCATTTCA
1 ATAACATTTTCCATTTCA
*
47804115 ATATCATTTTCCATTTCA
1 ATAACATTTTCCATTTCA
47804133 A
1 A
47804134 AATCATGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 3 0.09
17 11 0.34
18 18 0.56
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.46
Consensus pattern (18 bp):
ATAACATTTTCCATTTCA
Found at i:47804125 original size:18 final size:18
Alignment explanation
Indices: 47804104--47804139 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
47804094 TTTAATAACA
*
47804104 TTTCCATTTCAATATCAT
1 TTTCCATTTCAAAATCAT
47804122 TTTCCATTTCAAAATCAT
1 TTTCCATTTCAAAATCAT
47804140 GATTTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTCCATTTCAAAATCAT
Found at i:47810745 original size:27 final size:27
Alignment explanation
Indices: 47810714--47810891 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
47810704 TAAATTGTAC
47810714 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
47810741 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47810767 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
47810795 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
47810823 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47810850 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
47810877 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47810892 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:47810828 original size:82 final size:81
Alignment explanation
Indices: 47810715--47810870 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
47810705 AAATTGTACA
* *
47810715 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
47810779 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
47810796 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
47810861 TGCGAGTTGA
65 TGCGAATTGA
47810871 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:47810882 original size:82 final size:81
Alignment explanation
Indices: 47810711--47810891 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
47810701 GATTAAATTG
* *
47810711 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
47810776 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
47810792 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
47810856 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
47810874 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
47810892 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:47816274 original size:27 final size:27
Alignment explanation
Indices: 47816243--47816420 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
47816233 TAAATTGTAC
47816243 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
47816270 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47816296 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
47816324 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
47816352 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
47816379 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
47816406 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
47816421 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:47816357 original size:82 final size:81
Alignment explanation
Indices: 47816244--47816399 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
47816234 AAATTGTACA
* *
47816244 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
47816308 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
47816325 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
47816390 TGCGAGTTGA
65 TGCGAATTGA
47816400 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:47816411 original size:82 final size:81
Alignment explanation
Indices: 47816240--47816420 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
47816230 GATTAAATTG
* *
47816240 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
47816305 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
47816321 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
47816385 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
47816403 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
47816421 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:47825599 original size:25 final size:25
Alignment explanation
Indices: 47825575--47825656 Score: 119
Period size: 25 Copynumber: 3.3 Consensus size: 25
47825565 AGAATAGTAT
* * *
47825575 GCTCTCACAAGCTATAAATTGGTAT
1 GCTCTTACAAGCTATAAATCGGTAC
* *
47825600 GCTCTTACGAGCTATAAATCGATAC
1 GCTCTTACAAGCTATAAATCGGTAC
47825625 GCTCTTACAAGCTATAAATCGGTAC
1 GCTCTTACAAGCTATAAATCGGTAC
47825650 GCTCTTA
1 GCTCTTA
47825657 TGAACTGTAG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (25 bp):
GCTCTTACAAGCTATAAATCGGTAC
Found at i:47834057 original size:47 final size:47
Alignment explanation
Indices: 47834016--47834233 Score: 355
Period size: 47 Copynumber: 4.6 Consensus size: 47
47834006 TGTGAGTGTA
* *
47834016 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834063 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
47834110 TTTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834159 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* *
47834206 TATATATATGTGATTAGGCCTAATGGCC
1 --TATATATGTGATAAGGCCGAATGGCC
47834234 GATATATATG
Statistics
Matches: 161, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
47 91 0.57
49 70 0.43
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:47834130 original size:96 final size:94
Alignment explanation
Indices: 47834016--47835055 Score: 1142
Period size: 96 Copynumber: 11.2 Consensus size: 94
47834006 TGTGAGTGTA
* *
47834016 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
47834081 GAATGGCCAATGTGATGAATGTGAAAGTG
66 GAATGGCCAATGTGATGAATGTGAAAGTG
*
47834110 TTTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
47834175 CCGAATGGCCAATGTGATGAATGTGAAAGTG
64 CCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * * *** ** *
47834206 TATATATATGTGATTAGGCCTAATGGCCGATAT-AT--ATGTGATAAG-GCCGA-ATG-GCCAAT
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA-AAGTGTATATATGTGATAAG
* * * * *
47834265 G-TG-AT-G--AATGTGA-AAGTGTATATA-TG
63 GCCGAATGGCCAATGTGATGAATGT-GAAAGTG
* * * ** * * * * * *
47834291 TGATA-AGGCCGA-ATGGCC-AATGTGATGAATGTGA-AAGTGTATATA-TGTGATA-AGGCCGA
1 T-ATATATG-TGATAAGGCCGAATG-G-CCAATGTGATGAATGT-GAAAGTGT-ATATATG-TGA
* **
47834350 -ATGGCC-AATGTGATGAATGTGA--AA-GTGTATATA-TG
59 TAAGGCCGAATG-G-CCAATGTGATGAATGTG-A-A-AGTG
* * *
47834385 TGATA-AGGCCGA-ATGGCC-AAT-G----T--GATGAATGTGAAAGTGTATATATGTGATAAGG
1 T-ATATATG-TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
47834440 CCGAATGGCCAATGTGATGAATGTGAAAGTG
64 CCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
47834471 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATTTGAAAGTGTATATATGTGATAAGG
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
47834536 CCGAATGGCCAATGTGATGAATGTGAAAGTG
64 CCGAATGGCCAATGTGATGAATGTGAAAGTG
47834567 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
47834632 GAATGGCCAATGTGATGAATGTGAAAGTG
66 GAATGGCCAATGTGATGAATGTGAAAGTG
47834661 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
47834726 GAATGGCCAATGTGATGAATGTGAAAGTG
66 GAATGGCCAATGTGATGAATGTGAAAGTG
47834755 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
*
47834820 CCTAATGGCCAATGTGATGAATGTGAAAGTG
64 CCGAATGGCCAATGTGATGAATGTGAAAGTG
47834851 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGTGAAAGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATG-A-ATGTGAAAGTGTATATATGTGATAAGG
* *
47834916 CCTAATGGCCGATGTGATGAATGTGAAAGTG
64 CCGAATGGCCAATGTGATGAATGTGAAAGTG
* * ** * *
47834947 TATGTATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
47835012 GAGTGGCCAACGTGATGGATGTGAAAGTG
66 GAATGGCCAATGTGATGAATGTGAAAGTG
*
47835041 TATAAATGTGATAAG
1 TATATATGTGATAAG
47835056 TCCCGAAGGG
Statistics
Matches: 826, Mismatches: 69, Indels: 100
0.83 0.07 0.10
Matches are distributed among these distances:
82 4 0.00
83 8 0.01
84 8 0.01
85 24 0.03
86 32 0.04
87 17 0.02
88 14 0.02
89 8 0.01
90 2 0.00
91 5 0.01
92 7 0.01
93 9 0.01
94 331 0.40
95 3 0.00
96 342 0.41
97 1 0.00
98 11 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (94 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
GAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:47834242 original size:30 final size:28
Alignment explanation
Indices: 47834207--47834261 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
47834197 GTGAAAGTGT
* *
47834207 ATATATATGTGATTAGGCCTAATGGCCG
1 ATATATATGTGATAAGGCCGAATGGCCG
47834235 ATATATATGTGATAAGGCCGAATGGCC
1 ATATATATGTGATAAGGCCGAATGGCC
47834262 AATGTGATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (28 bp):
ATATATATGTGATAAGGCCGAATGGCCG
Found at i:47834289 original size:47 final size:47
Alignment explanation
Indices: 47834236--47835055 Score: 1442
Period size: 47 Copynumber: 17.3 Consensus size: 47
47834226 TAATGGCCGA
47834236 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834283 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834330 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834377 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834424 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
47834471 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATTTGAAAGTG
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834520 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834567 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834614 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834661 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834708 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834755 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
47834802 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834851 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATG-A-ATGTGAAAGTG
* *
47834900 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * **
47834947 TATGTATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * * *
47834994 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
47835041 TATAAATGTGATAAG
1 TATATATGTGATAAG
47835056 TCCCGAAGGG
Statistics
Matches: 743, Mismatches: 24, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
47 607 0.82
48 2 0.00
49 134 0.18
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:47834306 original size:75 final size:76
Alignment explanation
Indices: 47834159--47834308 Score: 266
Period size: 77 Copynumber: 2.0 Consensus size: 76
47834149 TGTGAAAGTG
*
47834159 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATTAGG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGG
*
47834224 CCTAATGGCCGA
65 CCGAATGGCCGA
47834236 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGC
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAGGC
47834300 CGAATGGCC
66 CGAATGGCC
47834309 AATGTGATGA
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
75 24 0.34
77 47 0.66
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.29
Consensus pattern (76 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAGGC
CGAATGGCCGA
Found at i:47834485 original size:237 final size:235
Alignment explanation
Indices: 47834236--47835055 Score: 1442
Period size: 237 Copynumber: 3.5 Consensus size: 235
47834226 TAATGGCCGA
47834236 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
47834301 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
47834366 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
131 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
47834431 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
196 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * *
47834471 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATTTGAAAGTGTATATATGTGATAAGG
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
47834536 CCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
64 CCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
47834601 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
129 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
47834666 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
194 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
47834708 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
47834773 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
66 GAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGAT
47834838 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGTGAAAGTGTAT
129 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG-A-ATGTGAAAGTGTAT
* *
47834903 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
192 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * ** * *
47834947 TATGTATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * *
47835012 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
47835056 TCCCGAAGGG
Statistics
Matches: 560, Mismatches: 19, Indels: 8
0.95 0.03 0.01
Matches are distributed among these distances:
235 91 0.16
237 327 0.58
238 1 0.00
239 141 0.25
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (235 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:47834980 original size:22 final size:22
Alignment explanation
Indices: 47834905--47834980 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
47834895 AAGTGTATAT
*
47834905 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCTG
* *** **
47834927 ATGTGATGAATGTGAAAGTGTATG
1 ATGTGAT-AAGGCCTAA-TGGCTG
47834951 TATGTGATAAGGCCTAATGGCTG
1 -ATGTGATAAGGCCTAATGGCTG
47834974 ATGTGAT
1 ATGTGAT
47834981 GAATGTGAAA
Statistics
Matches: 38, Mismatches: 13, Indels: 6
0.67 0.23 0.11
Matches are distributed among these distances:
22 14 0.37
23 9 0.24
24 8 0.21
25 7 0.18
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.30
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCTG
Found at i:47838074 original size:58 final size:58
Alignment explanation
Indices: 47837978--47838091 Score: 165
Period size: 58 Copynumber: 2.0 Consensus size: 58
47837968 GTTCCATAAA
* * * * *
47837978 GACATGTGAATGTGGTATTCTCTTGATCAGTGGGAGCTATGGCAATCTAGTTGTACAG
1 GACATGTGAATGTAGTATTCTCTTGATCAATAGCAGCTATGACAATCTAGTTGTACAG
* *
47838036 GACATGTGAATGTAGTCTTCTCTTGATCAATAGCAGCTATGACAATCTGGTTGTAC
1 GACATGTGAATGTAGTATTCTCTTGATCAATAGCAGCTATGACAATCTAGTTGTAC
47838092 CCCGAATAAC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 49 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (58 bp):
GACATGTGAATGTAGTATTCTCTTGATCAATAGCAGCTATGACAATCTAGTTGTACAG
Found at i:47839434 original size:51 final size:52
Alignment explanation
Indices: 47839303--47839603 Score: 330
Period size: 51 Copynumber: 5.9 Consensus size: 52
47839293 TAAAAGCGAA
*
47839303 AGTGAT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * *
47839353 A-TGATAGGTCGCATGTGTAGTACTATGTGCAGCCTACTATGCGTACCGGAT
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * *
47839404 AGT-TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * *
47839454 A-TGATAGGTCGCATGTGTAGTACTATGTGCAGCCTACTATGCGTACCGGAT
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * * *
47839505 AGT-TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * * * *
47839556 GGTAAT-GGTCAAATGTGTAGTACTATGTACAGGCTACTATGTGAACCG
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
47839604 AACATCATTG
Statistics
Matches: 205, Mismatches: 39, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
49 5 0.02
50 80 0.39
51 117 0.57
52 3 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (52 bp):
AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
Found at i:47839462 original size:101 final size:101
Alignment explanation
Indices: 47839311--47839596 Score: 493
Period size: 101 Copynumber: 2.8 Consensus size: 101
47839301 AAAGTGATGG
47839311 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAC
47839376 TATGTGCAGCCTACTATGCGTACCGGATAGTTTCGA
66 TATGTGCAGCCTACTATGCGTACCGGATAGTTTCGA
47839412 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAC
47839477 TATGTGCAGCCTACTATGCGTACCGGATAGTTTCGA
66 TATGTGCAGCCTACTATGCGTACCGGATAGTTTCGA
* * **
47839513 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGG-ATGGTAATGGTCAAATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGT
* *
47839577 ACTATGTACAGGCTACTATG
64 ACTATGTGCAGCCTACTATG
47839597 TGAACCGAAC
Statistics
Matches: 177, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
100 4 0.02
101 142 0.80
102 31 0.18
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTAC
TATGTGCAGCCTACTATGCGTACCGGATAGTTTCGA
Found at i:47839591 original size:152 final size:151
Alignment explanation
Indices: 47839316--47839603 Score: 355
Period size: 152 Copynumber: 1.9 Consensus size: 151
47839306 GATGGTCACG
* * * *
47839316 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGCATGTGTAGTACTATGT
1 TGTGTAGTACTATGTGCAGCCTACTACGCGTACCGGAATGATAGATCACATGTGTAGTACTATGT
* * ** *
47839381 GCAGCCTACTATGCGTACCGGATAGTTTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGT
66 GCAGCCTACTACGCGTACCGGATAGTATCGATCAAATGTGTAGTACTATGTACAGGCTACTACGT
*
47839446 GTACCGGAATGATAGGTCGCA
131 GAACCGGAATGATAGGTCGCA
* * * *
47839467 TGTGTAGTACTATGTGCAGCCTACTATGCGTACCGG-ATAGTTTCGATCACGTGTGTAGTACTAT
1 TGTGTAGTACTATGTGCAGCCTACTACGCGTACCGGAAT-G-ATAGATCACATGTGTAGTACTAT
* * * * *
47839531 GTGCAGGCTACTACGTGTATCGGATGGTAAT-GGTCAAATGTGTAGTACTATGTACAGGCTACTA
64 GTGCAGCCTACTACGCGTACCGGATAGT-ATCGATCAAATGTGTAGTACTATGTACAGGCTACTA
*
47839595 TGTGAACCG
128 CGTGAACCG
47839604 AACATCATTG
Statistics
Matches: 114, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
150 2 0.02
151 34 0.30
152 77 0.68
153 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (151 bp):
TGTGTAGTACTATGTGCAGCCTACTACGCGTACCGGAATGATAGATCACATGTGTAGTACTATGT
GCAGCCTACTACGCGTACCGGATAGTATCGATCAAATGTGTAGTACTATGTACAGGCTACTACGT
GAACCGGAATGATAGGTCGCA
Found at i:47839661 original size:45 final size:45
Alignment explanation
Indices: 47839600--47839694 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 45
47839590 TACTATGTGA
* * *
47839600 ACCGAACATCATTGATTAGTAAGGTGGTTGTTATGTGCT-AATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTACTGAA-TCC
* *
47839645 ACCGGACATTATTGATTAATAAGGTGGTTGCTATGTACTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTACTGAATCC
47839690 ACCGA
1 ACCGA
47839695 GTATATGTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
45 41 0.95
46 2 0.05
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTACTGAATCC
Found at i:47848020 original size:35 final size:35
Alignment explanation
Indices: 47847934--47848022 Score: 115
Period size: 35 Copynumber: 2.5 Consensus size: 35
47847924 ATTTGTTGAT
* * *
47847934 ATTCTGATTCACATGTTAAGCATGCCATTATTTTG
1 ATTCTGATTCACATGTTAACCATGCCACTATTCTG
* *
47847969 ATTCTGATACACATGTTAACCATGTCACTATTCTG
1 ATTCTGATTCACATGTTAACCATGCCACTATTCTG
**
47848004 ATTCTGATTCGTATGTTAA
1 ATTCTGATTCACATGTTAA
47848023 GTATGCAACC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (35 bp):
ATTCTGATTCACATGTTAACCATGCCACTATTCTG
Found at i:47848796 original size:22 final size:22
Alignment explanation
Indices: 47848722--47848796 Score: 69
Period size: 22 Copynumber: 3.4 Consensus size: 22
47848712 TGGACAAGCC
* * *
47848722 ACCACTGATTTGCAGTTAATCT
1 ACCACTGATTTGTAGATAAACT
** * **
47848744 GTCATTGATTTGTAGATAAAAA
1 ACCACTGATTTGTAGATAAACT
*
47848766 ACCATTGATTTGTAGATAAACT
1 ACCACTGATTTGTAGATAAACT
47848788 ACCACTGAT
1 ACCACTGAT
47848797 AACACTAATG
Statistics
Matches: 40, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (22 bp):
ACCACTGATTTGTAGATAAACT
Found at i:47849886 original size:15 final size:16
Alignment explanation
Indices: 47849866--47849898 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
47849856 TGGTTCGGCT
47849866 AAGGAGAAGG-GAAGA
1 AAGGAGAAGGTGAAGA
*
47849881 AAGGAGTAGGTGAAGA
1 AAGGAGAAGGTGAAGA
47849897 AA
1 AA
47849899 AATAGAACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.52, C:0.00, G:0.42, T:0.06
Consensus pattern (16 bp):
AAGGAGAAGGTGAAGA
Found at i:47851100 original size:63 final size:64
Alignment explanation
Indices: 47851023--47851149 Score: 247
Period size: 63 Copynumber: 2.0 Consensus size: 64
47851013 ATATATCATA
47851023 TCTCTAAAAAGACGAAAACAAAAGTTGTAGATCAAAAAAAAAAAAAAAA-ACAATGGCTCTATG
1 TCTCTAAAAAGACGAAAACAAAAGTTGTAGATCAAAAAAAAAAAAAAAAGACAATGGCTCTATG
47851086 TCTCTAAAAAGACGAAAACAAAAGTTGTAGATCAAAAAAAAAAAAAAAAGACAATGGCTCTATG
1 TCTCTAAAAAGACGAAAACAAAAGTTGTAGATCAAAAAAAAAAAAAAAAGACAATGGCTCTATG
47851150 AATCCGAAGG
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
63 49 0.78
64 14 0.22
ACGTcount: A:0.57, C:0.13, G:0.13, T:0.17
Consensus pattern (64 bp):
TCTCTAAAAAGACGAAAACAAAAGTTGTAGATCAAAAAAAAAAAAAAAAGACAATGGCTCTATG
Found at i:47853898 original size:28 final size:28
Alignment explanation
Indices: 47853834--47853902 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 28
47853824 TTTTATTCTG
* *
47853834 AACCCCAAATCCTAAATCTTAAAATTAA
1 AACCCCAAACCCTAAATCTTAAAATCAA
* * * **
47853862 AATCTCAAACCCTAAATCTTAAACTCGT
1 AACCCCAAACCCTAAATCTTAAAATCAA
47853890 AACCCCAAACCCT
1 AACCCCAAACCCT
47853903 TAAACCTTGA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.43, C:0.32, G:0.01, T:0.23
Consensus pattern (28 bp):
AACCCCAAACCCTAAATCTTAAAATCAA
Found at i:47853947 original size:26 final size:27
Alignment explanation
Indices: 47853894--47853968 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 27
47853884 ACTCGTAACC
*
47853894 CCAAACCCTTAAACCTTGAA-CTTAAAAT
1 CCAAACCC--AAACCCTGAACCTTAAAAT
* * *
47853922 TCAAACTCAAGCCCTGAACCTT-AAAT
1 CCAAACCCAAACCCTGAACCTTAAAAT
*
47853948 CCAAACCCAAACCTTGAACCT
1 CCAAACCCAAACCCTGAACCT
47853969 CGAGGTTCAA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 29 0.76
27 3 0.08
28 6 0.16
ACGTcount: A:0.40, C:0.33, G:0.05, T:0.21
Consensus pattern (27 bp):
CCAAACCCAAACCCTGAACCTTAAAAT
Found at i:47856754 original size:43 final size:43
Alignment explanation
Indices: 47856692--47856868 Score: 171
Period size: 43 Copynumber: 4.1 Consensus size: 43
47856682 ACATAGGACT
* * *
47856692 TCGATATGTGATTTCGTGTAAGACCATGTCTGGGACATTGGCA
1 TCGATTTGAGATTTAGTGTAAGACCATGTCTGGGACATTGGCA
* * ** *
47856735 TCGATTTGAGAATTT-GTGTAAGACTACGTCTGGGATGTTGCCA
1 TCGATTTGAG-ATTTAGTGTAAGACCATGTCTGGGACATTGGCA
* *
47856778 TCAATTTGAGATTTACGTGTAAGACCATGTTTGGGACATTGGCA
1 TCGATTTGAGATTTA-GTGTAAGACCATGTCTGGGACATTGGCA
* * * * *
47856822 TCG-TAT-ATGATTTAATGTAAGACCCTGTCTAGGACAGTGGCA
1 TCGATTTGA-GATTTAGTGTAAGACCATGTCTGGGACATTGGCA
47856864 TCGAT
1 TCGAT
47856869 AGTTGATTAC
Statistics
Matches: 108, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
42 31 0.29
43 49 0.45
44 28 0.26
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
TCGATTTGAGATTTAGTGTAAGACCATGTCTGGGACATTGGCA
Found at i:47856876 original size:43 final size:42
Alignment explanation
Indices: 47856790--47856889 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
47856780 AATTTGAGAT
* * * *
47856790 TTACGTGTAAGACCATGTTTGGGACATTGGCATCGTATATGA
1 TTACATGTAAGACCATGTCTAGGACAGTGGCATCGTATATGA
*
47856832 TTTA-ATGTAAGACCCTGTCTAGGACAGTGGCATCG-ATAGTTGA
1 -TTACATGTAAGACCATGTCTAGGACAGTGGCATCGTATA--TGA
47856875 TTACATGTAAGACCA
1 TTACATGTAAGACCA
47856890 CGTCCGAGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
41 3 0.06
42 29 0.60
43 16 0.33
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTAGGACAGTGGCATCGTATATGA
Found at i:47859306 original size:31 final size:32
Alignment explanation
Indices: 47859269--47859328 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
47859259 CGGAAGCTTA
* *
47859269 ATTTAAAACAAA-TGATTTGCGAAAATGTGTT
1 ATTTAAAAAAAATTGAGTTGCGAAAATGTGTT
47859300 ATTTAAAAAAAATTGAGTTGCGAAAATGT
1 ATTTAAAAAAAATTGAGTTGCGAAAATGT
47859329 AGCATTTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 11 0.42
32 15 0.58
ACGTcount: A:0.45, C:0.05, G:0.17, T:0.33
Consensus pattern (32 bp):
ATTTAAAAAAAATTGAGTTGCGAAAATGTGTT
Found at i:47859994 original size:22 final size:22
Alignment explanation
Indices: 47859965--47860016 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
47859955 AATGTCTAAG
* *
47859965 AGCCATAAACAAGATAGCTATA
1 AGCCATAAACAAAATAGCTACA
* *
47859987 AGCTATAAACAAAATGGCTACA
1 AGCCATAAACAAAATAGCTACA
47860009 AGCCATAA
1 AGCCATAA
47860017 GTACAGTAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.50, C:0.19, G:0.13, T:0.17
Consensus pattern (22 bp):
AGCCATAAACAAAATAGCTACA
Found at i:47860058 original size:32 final size:32
Alignment explanation
Indices: 47860008--47860178 Score: 213
Period size: 32 Copynumber: 5.4 Consensus size: 32
47859998 AAATGGCTAC
* * * *
47860008 AAGCCATAAGT-ACAGTAATATGATTGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGACACA
* *
47860039 AAGCCATCAGTAGCAGTAATATGATCGACACA
1 AAGCCATCAGTAACGGTAATATGATCGACACA
* * *
47860071 CAA-CCATCAGTAATGGTAATATGATTGGCACA
1 -AAGCCATCAGTAACGGTAATATGATCGACACA
*
47860103 AAGCCA-CTAGTAATGGTAATATGATCGACACA
1 AAGCCATC-AGTAACGGTAATATGATCGACACA
47860135 AAGCCATCAGTAACGGTAATATGATCGACACA
1 AAGCCATCAGTAACGGTAATATGATCGACACA
47860167 AAGCCATCAGTA
1 AAGCCATCAGTA
47860179 GAATCGCAGC
Statistics
Matches: 123, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
31 13 0.11
32 107 0.87
33 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAACGGTAATATGATCGACACA
Found at i:47860255 original size:27 final size:26
Alignment explanation
Indices: 47860225--47860286 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 26
47860215 AAAGCTTCCC
47860225 GTAATAGTATATGTGGCCA-AGCCACCA
1 GTAATAGTAT-TGTGG-CAGAGCCACCA
*
47860252 GTAACAGTGATTGTGGCAGAGCCACCA
1 GTAATAGT-ATTGTGGCAGAGCCACCA
47860279 GT-ATAGTA
1 GTAATAGTA
47860287 CTTCCTCGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
25 1 0.03
26 6 0.19
27 22 0.71
28 2 0.06
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (26 bp):
GTAATAGTATTGTGGCAGAGCCACCA
Found at i:47860376 original size:11 final size:11
Alignment explanation
Indices: 47860360--47860402 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
47860350 AACTAGTCAT
47860360 ACAAATCACAG
1 ACAAATCACAG
*
47860371 ACAAATCAATCAT
1 ACAAATC-A-CAG
*
47860384 ACCAATCACAG
1 ACAAATCACAG
47860395 ACAAATCA
1 ACAAATCA
47860403 GTCATTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 16 0.62
12 2 0.08
13 8 0.31
ACGTcount: A:0.53, C:0.28, G:0.05, T:0.14
Consensus pattern (11 bp):
ACAAATCACAG
Found at i:47860456 original size:24 final size:24
Alignment explanation
Indices: 47860364--47860460 Score: 108
Period size: 24 Copynumber: 4.0 Consensus size: 24
47860354 AGTCATACAA
47860364 ATCACAGACAAATCAATCA--TACC
1 ATCACAGACAAATCAATCATTTA-C
* *
47860387 AATCACAGACAAATCAGTCATTTAA
1 -ATCACAGACAAATCAATCATTTAC
* * *
47860412 ATCATAGACAAATTAGTCATTTAC
1 ATCACAGACAAATCAATCATTTAC
*
47860436 ATCACGGACAAATCAATCATTTAC
1 ATCACAGACAAATCAATCATTTAC
47860460 A
1 A
47860461 CTCGAGGGGC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
24 60 0.97
26 2 0.03
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.25
Consensus pattern (24 bp):
ATCACAGACAAATCAATCATTTAC
Found at i:47860526 original size:27 final size:26
Alignment explanation
Indices: 47860477--47860547 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 26
47860467 GGGCAAAATA
*
47860477 GTCA-TTTACCCTCTAGGGGCATTACG
1 GTCATTTTACCCTAT-GGGGCATTACG
*
47860503 GTCATTTTACCTTATGGGGTCATTACG
1 GTCATTTTACCCTATGGGG-CATTACG
47860530 GTCATTTTACCCTATGGG
1 GTCATTTTACCCTATGGG
47860548 AATTTTTCGG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
26 8 0.20
27 32 0.80
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGCATTACG
Found at i:47860558 original size:27 final size:27
Alignment explanation
Indices: 47860496--47860570 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
47860486 CCTCTAGGGG
* *
47860496 CATTACGGTCATTTTACCTTATGGGGT
1 CATTACGGTCATTTTACCCTATGGGAT
47860523 CATTACGGTCATTTTACCCTATGGGAAT
1 CATTACGGTCATTTTACCCTATGGG-AT
* * *
47860551 -TTTTCGGTTATTTTACCCTA
1 CATTACGGTCATTTTACCCTA
47860571 CATGGCTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 41 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (27 bp):
CATTACGGTCATTTTACCCTATGGGAT
Found at i:47862825 original size:97 final size:97
Alignment explanation
Indices: 47862712--47863017 Score: 531
Period size: 97 Copynumber: 3.2 Consensus size: 97
47862702 TTAAATTTTT
47862712 GTTATGAAATTTTAATGTTTAAATGGTTAATTAAATGAAAAGGATTAAATCGTAAAAATAGAAAA
1 GTTATGAAATTTTAATGTTTAAATGGTTAATTAAATGAAAAGGATTAAATCGTAAAAATAGAAAA
47862777 AGTTAAGTTCTATTAGTTAAAAGGGTCAAATG
66 AGTTAAGTTCTATTAGTTAAAAGGGTCAAATG
*
47862809 GTTATGAAATTTTAATGTTTAAATGGTTAATTAAATGAAAAGGATTAAATCGTAAAAATAGCAAA
1 GTTATGAAATTTTAATGTTTAAATGGTTAATTAAATGAAAAGGATTAAATCGTAAAAATAGAAAA
47862874 AGTTAAGTTCTATTAGTTAAAAGGGTCAAATG
66 AGTTAAGTTCTATTAGTTAAAAGGGTCAAATG
* * * * *
47862906 GTTATGAAATTTTAATGTTTAAATGGTTAATTAAATTAAAAGGACTAAATCATAAAAATGGTAAA
1 GTTATGAAATTTTAATGTTTAAATGGTTAATTAAATGAAAAGGATTAAATCGTAAAAATAGAAAA
* *
47862971 AGTTAAGTTATATTAGTTAAAAGAGTCAAATG
66 AGTTAAGTTCTATTAGTTAAAAGGGTCAAATG
*
47863003 GCTATGAAATTTTAA
1 GTTATGAAATTTTAA
47863018 ACTAAGGGAC
Statistics
Matches: 200, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
97 200 1.00
ACGTcount: A:0.45, C:0.04, G:0.17, T:0.35
Consensus pattern (97 bp):
GTTATGAAATTTTAATGTTTAAATGGTTAATTAAATGAAAAGGATTAAATCGTAAAAATAGAAAA
AGTTAAGTTCTATTAGTTAAAAGGGTCAAATG
Found at i:47862850 original size:51 final size:51
Alignment explanation
Indices: 47862793--47862948 Score: 146
Period size: 51 Copynumber: 3.2 Consensus size: 51
47862783 GTTCTATTAG
47862793 TTAAAAGGGTCAAATGGTTATGAAATTTTAATGTTTAAATGGTTAATTAAA
1 TTAAAAGGGTCAAATGGTTATGAAATTTTAATGTTTAAATGGTTAATTAAA
* * * * * *** * * *
47862844 TGAAAAGGATTAAATCG-TA-AAAATAGCAAAAG-TT-AA--GTTCTATT-AG
1 TTAAAAGGGTCAAATGGTTATGAAAT-TTTAATGTTTAAATGGTT-AATTAAA
47862890 TTAAAAGGGTCAAATGGTTATGAAATTTTAATGTTTAAATGGTTAATTAAA
1 TTAAAAGGGTCAAATGGTTATGAAATTTTAATGTTTAAATGGTTAATTAAA
47862941 TTAAAAGG
1 TTAAAAGG
47862949 ACTAAATCAT
Statistics
Matches: 74, Mismatches: 22, Indels: 18
0.65 0.19 0.16
Matches are distributed among these distances:
46 17 0.23
47 8 0.11
48 8 0.11
49 8 0.11
50 8 0.11
51 25 0.34
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.35
Consensus pattern (51 bp):
TTAAAAGGGTCAAATGGTTATGAAATTTTAATGTTTAAATGGTTAATTAAA
Found at i:47866756 original size:16 final size:17
Alignment explanation
Indices: 47866733--47866770 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
47866723 AATAAACAAT
47866733 TAAA-TAAATT-GGAAA
1 TAAATTAAATTGGGAAA
47866748 TAAATTAAATTGGGAAA
1 TAAATTAAATTGGGAAA
47866765 TAAATT
1 TAAATT
47866771 TCGGTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 4 0.19
16 6 0.29
17 11 0.52
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (17 bp):
TAAATTAAATTGGGAAA
Found at i:47867338 original size:13 final size:13
Alignment explanation
Indices: 47867322--47867356 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
47867312 ACTTTTTTTT
47867322 AATTTATTTTGAA
1 AATTTATTTTGAA
*
47867335 AATTTATTTCGAA
1 AATTTATTTTGAA
47867348 AATTT-TTTT
1 AATTTATTTT
47867357 CTATGAACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 3 0.15
13 17 0.85
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (13 bp):
AATTTATTTTGAA
Found at i:47867540 original size:44 final size:44
Alignment explanation
Indices: 47867477--47867562 Score: 154
Period size: 44 Copynumber: 2.0 Consensus size: 44
47867467 CCAATAGTCA
47867477 ACGAGGAGTAGTTAGAGTTGGCAAAAATGGGGGATTTAGGCTCG
1 ACGAGGAGTAGTTAGAGTTGGCAAAAATGGGGGATTTAGGCTCG
* *
47867521 ACGAGGAGTAGTTAGAGTTGTCAAAAATGGGTGATTTAGGCT
1 ACGAGGAGTAGTTAGAGTTGGCAAAAATGGGGGATTTAGGCT
47867563 AAGGGTTGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.30, C:0.08, G:0.36, T:0.26
Consensus pattern (44 bp):
ACGAGGAGTAGTTAGAGTTGGCAAAAATGGGGGATTTAGGCTCG
Found at i:47870026 original size:45 final size:45
Alignment explanation
Indices: 47869968--47870053 Score: 118
Period size: 45 Copynumber: 1.9 Consensus size: 45
47869958 TCTTCGTTTT
* *
47869968 TCAATCTCTTTTTCAATTTTCTCCTTTTCATTTCCTTTTTCAATC
1 TCAATCTCCTTTTCAATCTTCTCCTTTTCATTTCCTTTTTCAATC
* * * *
47870013 TCAATTTCCTTTTCAATCTTCTCTTTTTCGTTTTCTTTTTC
1 TCAATCTCCTTTTCAATCTTCTCCTTTTCATTTCCTTTTTC
47870054 TCTCACTTCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.13, C:0.26, G:0.01, T:0.60
Consensus pattern (45 bp):
TCAATCTCCTTTTCAATCTTCTCCTTTTCATTTCCTTTTTCAATC
Found at i:47870098 original size:31 final size:29
Alignment explanation
Indices: 47870030--47870103 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
47870020 CCTTTTCAAT
* *
47870030 CTTCTCTTTTTCGTTTTCTTTTTCTCTCA
1 CTTCTCTTTTTCTTTTTCATTTTCTCTCA
*
47870059 CTTCTCTTTTTCTTTTATCATTTTCATTTTCA
1 CTTCTCTTTTTCTTTT-TCATTTTC--TCTCA
47870091 -TTCTCTTTTTCTT
1 CTTCTCTTTTTCTT
47870104 CTTTTTCGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 15 0.38
30 7 0.18
31 13 0.33
32 4 0.10
ACGTcount: A:0.07, C:0.24, G:0.01, T:0.68
Consensus pattern (29 bp):
CTTCTCTTTTTCTTTTTCATTTTCTCTCA
Found at i:47871003 original size:13 final size:13
Alignment explanation
Indices: 47870981--47871016 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
47870971 AACTTTTTTT
* *
47870981 AATTTATTTCGAA
1 AATTTTTTTCAAA
47870994 AATTTTTTTCAAA
1 AATTTTTTTCAAA
47871007 AATTTTTTTC
1 AATTTTTTTC
47871017 TATGAACCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.56
Consensus pattern (13 bp):
AATTTTTTTCAAA
Found at i:47871287 original size:52 final size:53
Alignment explanation
Indices: 47871209--47871315 Score: 198
Period size: 52 Copynumber: 2.0 Consensus size: 53
47871199 GATGTTTAGA
*
47871209 TGAGTGGTTATGGTGTTGGTAGGTTCGACTTAGGATAGAAACAAAGGAGG-GG
1 TGAGTGGTTATGGGGTTGGTAGGTTCGACTTAGGATAGAAACAAAGGAGGTGG
47871261 TGAGTGGTTATGGGGTTGGTAGGTTCGACTTAGGATAGAAACAAAGGAGGTGG
1 TGAGTGGTTATGGGGTTGGTAGGTTCGACTTAGGATAGAAACAAAGGAGGTGG
47871314 TG
1 TG
47871316 TGTTTGATGG
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
52 49 0.92
53 4 0.08
ACGTcount: A:0.26, C:0.06, G:0.41, T:0.27
Consensus pattern (53 bp):
TGAGTGGTTATGGGGTTGGTAGGTTCGACTTAGGATAGAAACAAAGGAGGTGG
Found at i:47884444 original size:37 final size:37
Alignment explanation
Indices: 47884403--47884524 Score: 97
Period size: 37 Copynumber: 3.2 Consensus size: 37
47884393 GATTTCAAAG
47884403 CTTCTTAGGACTTTCTTTATCTTTCTTGTTGTTTATT
1 CTTCTTAGGACTTTCTTTATCTTTCTTGTTGTTTATT
* * ** **
47884440 CTTCTTTA--ATTAATTATTGTGAAATCTTTCTTGATT-TCAAAG
1 CTTC-TTAGGACT--TTCTT-T---ATCTTTCTTG-TTGTTTATT
47884482 CTTCTTAGGACTTTCTTTATCTTTCTTGTTGTTTATT
1 CTTCTTAGGACTTTCTTTATCTTTCTTGTTGTTTATT
47884519 CTTCTT
1 CTTCTT
47884525 TAATTAATTA
Statistics
Matches: 62, Mismatches: 12, Indels: 22
0.65 0.12 0.23
Matches are distributed among these distances:
36 4 0.06
37 22 0.35
38 7 0.11
39 1 0.02
40 1 0.02
41 7 0.11
42 16 0.26
43 4 0.06
ACGTcount: A:0.16, C:0.16, G:0.10, T:0.58
Consensus pattern (37 bp):
CTTCTTAGGACTTTCTTTATCTTTCTTGTTGTTTATT
Found at i:47884472 original size:79 final size:79
Alignment explanation
Indices: 47884377--47884614 Score: 442
Period size: 79 Copynumber: 3.0 Consensus size: 79
47884367 TTGAAGGGAG
*
47884377 TTGTGAAATATTTCTTGATTTCAAAGCTTCTTAGGACTTTCTTTATCTTTCTTGTTGTTTATTCT
1 TTGTGAAATCTTTCTTGATTTCAAAGCTTCTTAGGACTTTCTTTATCTTTCTTGTTGTTTATTCT
47884442 TCTTTAATTAATTA
66 TCTTTAATTAATTA
47884456 TTGTGAAATCTTTCTTGATTTCAAAGCTTCTTAGGACTTTCTTTATCTTTCTTGTTGTTTATTCT
1 TTGTGAAATCTTTCTTGATTTCAAAGCTTCTTAGGACTTTCTTTATCTTTCTTGTTGTTTATTCT
47884521 TCTTTAATTAATTA
66 TCTTTAATTAATTA
*
47884535 TTGTGAAATCTTTCTTGATTTCAAAGCTTCTTAGGACTTTCTTTATCTTT-TTCGTTGTTTGTTC
1 TTGTGAAATCTTTCTTGATTTCAAAGCTTCTTAGGACTTTCTTTATCTTTCTT-GTTGTTTATTC
47884599 TTCTTTAATTAATTA
65 TTCTTTAATTAATTA
47884614 T
1 T
47884615 GTTTGTGCCG
Statistics
Matches: 156, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
78 2 0.01
79 154 0.99
ACGTcount: A:0.20, C:0.13, G:0.11, T:0.56
Consensus pattern (79 bp):
TTGTGAAATCTTTCTTGATTTCAAAGCTTCTTAGGACTTTCTTTATCTTTCTTGTTGTTTATTCT
TCTTTAATTAATTA
Found at i:47884486 original size:42 final size:42
Alignment explanation
Indices: 47884440--47884566 Score: 117
Period size: 42 Copynumber: 3.1 Consensus size: 42
47884430 GTTGTTTATT
47884440 CTTCTTTAATTAATTATTGTGAAATCTTTCTTGATTTCAAAG
1 CTTCTTTAATTAATTATTGTGAAATCTTTCTTGATTTCAAAG
* * ** **
47884482 CTTC-TTAGGACT--TTCTT-T---ATCTTTCTTG-TTGTTTATT
1 CTTCTTTA--ATTAATTATTGTGAAATCTTTCTTGATT-TCAAAG
47884519 CTTCTTTAATTAATTATTGTGAAATCTTTCTTGATTTCAAAG
1 CTTCTTTAATTAATTATTGTGAAATCTTTCTTGATTTCAAAG
47884561 CTTCTT
1 CTTCTT
47884567 AGGACTTTCT
Statistics
Matches: 62, Mismatches: 12, Indels: 22
0.65 0.12 0.23
Matches are distributed among these distances:
36 4 0.06
37 16 0.26
38 7 0.11
39 1 0.02
40 1 0.02
41 7 0.11
42 22 0.35
43 4 0.06
ACGTcount: A:0.22, C:0.14, G:0.09, T:0.54
Consensus pattern (42 bp):
CTTCTTTAATTAATTATTGTGAAATCTTTCTTGATTTCAAAG
Found at i:47884927 original size:15 final size:15
Alignment explanation
Indices: 47884907--47884938 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
47884897 CTCTATCATT
47884907 TTCTTTCTCTTTTTC
1 TTCTTTCTCTTTTTC
*
47884922 TTCTTTTTCTTTTTC
1 TTCTTTCTCTTTTTC
47884937 TT
1 TT
47884939 AATTTTCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TTCTTTCTCTTTTTC
Found at i:47891980 original size:15 final size:15
Alignment explanation
Indices: 47891960--47891991 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
47891950 CTCTATCATT
47891960 TTCTTTCTCTTTTTC
1 TTCTTTCTCTTTTTC
*
47891975 TTCTTTTTCTTTTTC
1 TTCTTTCTCTTTTTC
47891990 TT
1 TT
47891992 AATTTTCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TTCTTTCTCTTTTTC
Found at i:47895552 original size:36 final size:35
Alignment explanation
Indices: 47895509--47895627 Score: 123
Period size: 36 Copynumber: 3.3 Consensus size: 35
47895499 ATAAGTATTT
* *
47895509 GTGTATTTTGGAGCGATTGACTCGTGTGAGCATCTG
1 GTGTATTTTGGAG-GATTGGCTCATGTGAGCATCTG
47895545 GTGTATTTTTGTG-GGATTGGCTCATGTGAGCATCTG
1 GTGTA-TTTTG-GAGGATTGGCTCATGTGAGCATCTG
* * * *
47895581 TTGTGTCTTGGAAGGATTGGCTCATGTGACCATCTG
1 GTGTATTTTGG-AGGATTGGCTCATGTGAGCATCTG
* *
47895617 CTGTGTTTTGG
1 GTGTATTTTGG
47895628 TTGGACTGAC
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 4 0.06
36 59 0.83
37 6 0.08
38 1 0.01
ACGTcount: A:0.14, C:0.13, G:0.33, T:0.39
Consensus pattern (35 bp):
GTGTATTTTGGAGGATTGGCTCATGTGAGCATCTG
Found at i:47897797 original size:20 final size:20
Alignment explanation
Indices: 47897774--47897827 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
47897764 AGTTTTTCCC
*
47897774 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
47897794 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
47897814 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
47897828 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:47897809 original size:30 final size:30
Alignment explanation
Indices: 47897774--47897847 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
47897764 AGTTTTTCCC
47897774 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
47897804 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
47897834 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
47897848 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:47897837 original size:20 final size:20
Alignment explanation
Indices: 47897774--47897838 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
47897764 AGTTTTTCCC
* * * *
47897774 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
47897794 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
47897813 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
47897834 AGCTC
1 AGCTC
47897839 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:47900677 original size:34 final size:33
Alignment explanation
Indices: 47900613--47900678 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
47900603 TTAAAGATGT
* *
47900613 TGTTCTACATGCATGGAACGGCAATTAATGAGA
1 TGTTCCACATGCATGGAACGACAATTAATGAGA
*
47900646 TGTTCCACATGCAATGG-ACGACATTTAAATGAG
1 TGTTCCACATGC-ATGGAACGACAATT-AATGAG
47900679 GGAGAGTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (33 bp):
TGTTCCACATGCATGGAACGACAATTAATGAGA
Found at i:47904174 original size:20 final size:20
Alignment explanation
Indices: 47904151--47904209 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
47904141 TAGCTCGACC
* *
47904151 AGCTCAGAACCAGCTCAGCA
1 AGCTCAGATCCAGCTCAACA
*
47904171 AGCTCAGTTCCAGCTCAACA
1 AGCTCAGATCCAGCTCAACA
* *
47904191 AGTTCACATCCAGCTCAAC
1 AGCTCAGATCCAGCTCAAC
47904210 TCCAGCTCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.32, C:0.36, G:0.15, T:0.17
Consensus pattern (20 bp):
AGCTCAGATCCAGCTCAACA
Found at i:47909863 original size:23 final size:22
Alignment explanation
Indices: 47909812--47909863 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
47909802 CCTCGTCTTT
*
47909812 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
47909834 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
47909857 TTCTTTT
1 TTCTTTT
47909864 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:47909878 original size:18 final size:18
Alignment explanation
Indices: 47909857--47909895 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
47909847 TTTCTTCAAC
* *
47909857 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTCCTT
*
47909875 TTCTGTTTCACATTCCTT
1 TTCTGTTTCAAATTCCTT
47909893 TTC
1 TTC
47909896 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.03, T:0.62
Consensus pattern (18 bp):
TTCTGTTTCAAATTCCTT
Found at i:47910201 original size:23 final size:22
Alignment explanation
Indices: 47910149--47910201 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
47910139 TCCACGTCTT
*
47910149 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
47910171 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
47910194 TTTCTTTT
1 TTTCTTTT
47910202 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:47910478 original size:33 final size:33
Alignment explanation
Indices: 47910440--47910502 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
47910430 GATTACTCAC
47910440 TTCACTCG-TTTCTTTT-ACAGACTCTCTTTCTTT
1 TTCACTCGATTTCTTTTCA-AG-CTCTCTTTCTTT
*
47910473 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTCGATTTCTTTTCAAGCTCTCTTTC
47910503 AATTTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.13, C:0.27, G:0.06, T:0.54
Consensus pattern (33 bp):
TTCACTCGATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:47910529 original size:21 final size:21
Alignment explanation
Indices: 47910500--47910555 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 21
47910490 CAAGCTCTCT
*
47910500 TTCAATTTCTTTTTTCGCTTT-
1 TTCATTTTCTTTTTTC-CTTTC
* ** *
47910521 TTCTTTTTCAATTTTCTTTTC
1 TTCATTTTCTTTTTTCCTTTC
47910542 TTCATTTTCTTTTT
1 TTCATTTTCTTTTT
47910556 CTCTCACTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.71
Consensus pattern (21 bp):
TTCATTTTCTTTTTTCCTTTC
Found at i:47910548 original size:14 final size:14
Alignment explanation
Indices: 47910499--47910555 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
47910489 TCAAGCTCTC
47910499 TTTCAA-TTTCTTT
1 TTTCAATTTTCTTT
**
47910512 TTTCGCTTTT-TCTT
1 TTTCAATTTTCT-TT
47910526 TTTCAATTTTCTTT
1 TTTCAATTTTCTTT
47910540 TCTTC-ATTTTCTTT
1 T-TTCAATTTTCTTT
47910554 TT
1 TT
47910556 CTCTCACTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
13 6 0.17
14 26 0.72
15 4 0.11
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.72
Consensus pattern (14 bp):
TTTCAATTTTCTTT
Found at i:47910637 original size:6 final size:6
Alignment explanation
Indices: 47910517--47910624 Score: 67
Period size: 6 Copynumber: 17.7 Consensus size: 6
47910507 TCTTTTTTCG
* * * **
47910517 CTTTTT CTTTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
* * ** *
47910568 -TGATTT CTTTTT CTTTTG CAATTT CTTTTT CTTTTT CGTTTT CTTTTT
1 CT-TTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
*
47910616 -GTTTT CTTT
1 CTTTTT CTTT
47910625 CAATTTCTTT
Statistics
Matches: 74, Mismatches: 23, Indels: 10
0.69 0.21 0.09
Matches are distributed among these distances:
5 5 0.07
6 56 0.76
7 10 0.14
8 3 0.04
ACGTcount: A:0.06, C:0.18, G:0.04, T:0.72
Consensus pattern (6 bp):
CTTTTT
Found at i:47911928 original size:152 final size:150
Alignment explanation
Indices: 47911716--47912017 Score: 586
Period size: 152 Copynumber: 2.0 Consensus size: 150
47911706 TCGTACTTCA
47911716 GTAAAATTCTTGCCAATACCATACTCATCATGGAAAACACTTCTTACCACTATGGAAGGTGTAAT
1 GTAAAATTCTTGCCAATACCATACTCATCATGGAAAACACTTCTTACCACTATGGAAGGTGTAAT
47911781 CACCATCATTCAGAATATGATAATCAAACAAATCGAACTTTGTATGTGAATAATCTTTATCGCAC
66 CACCATCATTCAGAATATGATAATCAAACAAATCGAACTTTGTATGTGAATAATCTTTATCGCAC
47911846 ACTATCACACTTTGTTCATG
131 ACTATCACACTTTGTTCATG
47911866 GTAAAATTCTTGCCAATACCATACTCATCAATAGGAAAACACTTCTTACCACTATGGAAGGTGTA
1 GTAAAATTCTTGCCAATACCATACTCATC-AT-GGAAAACACTTCTTACCACTATGGAAGGTGTA
47911931 ATCACCATCATTCAGAATATGATAATCAAACAAATCGAACTTTGTATGTGAATAATCTTTATCGC
64 ATCACCATCATTCAGAATATGATAATCAAACAAATCGAACTTTGTATGTGAATAATCTTTATCGC
47911996 ACACTATCACACTTTGTTCATG
129 ACACTATCACACTTTGTTCATG
47912018 CTGATCTAAT
Statistics
Matches: 150, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
150 29 0.19
151 2 0.01
152 119 0.79
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (150 bp):
GTAAAATTCTTGCCAATACCATACTCATCATGGAAAACACTTCTTACCACTATGGAAGGTGTAAT
CACCATCATTCAGAATATGATAATCAAACAAATCGAACTTTGTATGTGAATAATCTTTATCGCAC
ACTATCACACTTTGTTCATG
Found at i:47912476 original size:33 final size:33
Alignment explanation
Indices: 47912438--47912500 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
47912428 GATTACTCAC
47912438 TTCAC-TCATTTCTTTT-ATAGACTCTCTTTCTTT
1 TTCACTTCATTTCTTTTCA-AG-CTCTCTTTCTTT
*
47912471 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTTCATTTCTTTTCAAGCTCTCTTTC
47912501 AATTTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 14 0.52
34 12 0.44
35 1 0.04
ACGTcount: A:0.14, C:0.25, G:0.05, T:0.56
Consensus pattern (33 bp):
TTCACTTCATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:47912527 original size:27 final size:27
Alignment explanation
Indices: 47912497--47912583 Score: 97
Period size: 27 Copynumber: 3.1 Consensus size: 27
47912487 TCAAGCTCTC
*
47912497 TTTCAATTTCTTTT-TTCGCTTTTTCTT
1 TTTCAATTTCTTTTCTTC-CATTTTCTT
* *
47912524 TTTCAATTTTTTTTCATTCTCAATTTCTT
1 TTTCAATTTCTTTTC-TTC-CATTTTCTT
47912553 TTTCAATTTTCTTTTCTT-CATTTTCTT
1 TTTCAA-TTTCTTTTCTTCCATTTTCTT
47912580 TTTC
1 TTTC
47912584 TCTCACTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
27 25 0.49
29 18 0.35
30 8 0.16
ACGTcount: A:0.11, C:0.18, G:0.01, T:0.69
Consensus pattern (27 bp):
TTTCAATTTCTTTTCTTCCATTTTCTT
Found at i:47912538 original size:17 final size:18
Alignment explanation
Indices: 47912515--47912557 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
47912505 TCTTTTTTCG
* *
47912515 CTTTTTCTTTTTCAATTT
1 CTTTTTCATTCTCAATTT
47912533 -TTTTTCATTCTCAATTT
1 CTTTTTCATTCTCAATTT
47912550 CTTTTTCA
1 CTTTTTCA
47912558 ATTTTCTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.14, C:0.19, G:0.00, T:0.67
Consensus pattern (18 bp):
CTTTTTCATTCTCAATTT
Found at i:47912559 original size:29 final size:27
Alignment explanation
Indices: 47912518--47912583 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 27
47912508 TTTTTCGCTT
47912518 TTTCTTTTTCAATTTT-TTTTCATTCTCAA
1 TTTCTTTTTCAATTTTCTTTTC--T-TCAA
*
47912547 TTTCTTTTTCAATTTTCTTTTCTTCAT
1 TTTCTTTTTCAATTTTCTTTTCTTCAA
47912574 TTTCTTTTTC
1 TTTCTTTTTC
47912584 TCTCACTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
27 13 0.37
28 1 0.03
29 16 0.46
30 5 0.14
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.70
Consensus pattern (27 bp):
TTTCTTTTTCAATTTTCTTTTCTTCAA
Found at i:47912567 original size:12 final size:12
Alignment explanation
Indices: 47912518--47912616 Score: 59
Period size: 12 Copynumber: 8.6 Consensus size: 12
47912508 TTTTTCGCTT
47912518 TTTCTTTTTCAA
1 TTTCTTTTTCAA
47912530 TTT-TTTTTC-A
1 TTTCTTTTTCAA
47912540 -TTC----TCAA
1 TTTCTTTTTCAA
47912547 TTTCTTTTTCAA
1 TTTCTTTTTCAA
*
47912559 TTTTCTTTTCTTCAT
1 -TTTC-TTT-TTCAA
**
47912574 TTTCTTTTTCTC
1 TTTCTTTTTCAA
** *
47912586 TCACTTTTTCGA
1 TTTCTTTTTCAA
47912598 TTTCTTTTTCAA
1 TTTCTTTTTCAA
*
47912610 TCTCTTT
1 TTTCTTT
47912617 CTCCTTTTCT
Statistics
Matches: 66, Mismatches: 11, Indels: 20
0.68 0.11 0.21
Matches are distributed among these distances:
6 2 0.03
7 1 0.02
8 3 0.05
9 2 0.03
10 1 0.02
11 6 0.09
12 33 0.50
13 7 0.11
14 7 0.11
15 4 0.06
ACGTcount: A:0.12, C:0.20, G:0.01, T:0.67
Consensus pattern (12 bp):
TTTCTTTTTCAA
Found at i:47912625 original size:24 final size:24
Alignment explanation
Indices: 47912540--47912626 Score: 68
Period size: 24 Copynumber: 3.5 Consensus size: 24
47912530 TTTTTTTTCA
* *
47912540 TTCTCAATTTCTTTTTCAATTTTCTT
1 TTCTCATTTTCTTTTTCAA-TCTC-T
** *
47912566 TTCTTCATTTTCTTTTTCTCTCACT
1 TTC-TCATTTTCTTTTTCAATCTCT
*
47912591 TTTTCGA-TTTCTTTTTCAATCTCT
1 TTCTC-ATTTTCTTTTTCAATCTCT
*
47912615 TTCTCCTTTTCT
1 TTCTCATTTTCT
47912627 CGCTCAATGG
Statistics
Matches: 47, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
24 25 0.53
25 4 0.09
26 5 0.11
27 13 0.28
ACGTcount: A:0.10, C:0.24, G:0.01, T:0.64
Consensus pattern (24 bp):
TTCTCATTTTCTTTTTCAATCTCT
Found at i:47913176 original size:21 final size:21
Alignment explanation
Indices: 47913152--47913218 Score: 80
Period size: 21 Copynumber: 3.1 Consensus size: 21
47913142 TTGGTATTTG
47913152 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
47913173 GGAATTGGTATGAAATAGTAT
1 GGAATTGGTACGAAATGGTAT
* *
47913194 GGTATTTGGTACGAATTGGTTAT
1 GG-AATTGGTACGAAATGG-TAT
47913217 GG
1 GG
47913219 TTCAAAGAGG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
21 21 0.55
22 12 0.32
23 5 0.13
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.34
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Done.