Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 18 of 153
Found at i:6078983 original size:23 final size:23
Alignment explanation
Indices: 6078957--6079101 Score: 177
Period size: 23 Copynumber: 6.3 Consensus size: 23
6078947 ATTCGGTATA
*
6078957 TATATAT-TCTGTTCAATTTGGTG
1 TATATATGT-TGTCCAATTTGGTG
* *
6078980 TATAAAATGTTGTTCAATTTGGTG
1 TAT-ATATGTTGTCCAATTTGGTG
6079004 TATATATGTTGTCCAA-TTGGTG
1 TATATATGTTGTCCAATTTGGTG
* * *
6079026 TATAAATGTTGTCCAATTTGATT
1 TATATATGTTGTCCAATTTGGTG
*
6079049 TATATATGCTGTCCAATTTGGTG
1 TATATATGTTGTCCAATTTGGTG
* *
6079072 TATATATGCTGTCCAATTTGGTA
1 TATATATGTTGTCCAATTTGGTG
6079095 TATATAT
1 TATATAT
6079102 ATGCTGTCCG
Statistics
Matches: 108, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
22 21 0.19
23 66 0.61
24 20 0.19
25 1 0.01
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.47
Consensus pattern (23 bp):
TATATATGTTGTCCAATTTGGTG
Found at i:6079035 original size:45 final size:46
Alignment explanation
Indices: 6078955--6079135 Score: 195
Period size: 48 Copynumber: 3.9 Consensus size: 46
6078945 TGATTCGGTA
* *
6078955 TATATATAT-TCTGTTCAATTTGGTGTATAAAATGTTGTTCAATTTGG
1 TATATATATGT-TGTCCAATTTGGTGTAT-AAATGTTGTCCAATTTGG
* *
6079002 TGTATATATGTTGTCCAA-TTGGTGTATAAATGTTGTCCAATTTGA
1 TATATATATGTTGTCCAATTTGGTGTATAAATGTTGTCCAATTTGG
* * * *
6079047 TTTATATATGCTGTCCAATTTGGTGTATATATGCTGTCCAATTTGG
1 TATATATATGTTGTCCAATTTGGTGTATAAATGTTGTCCAATTTGG
* * * * *
6079093 TATATATATATGCTGTCCGATTTGATGTATAAAAGCTGTCCAA
1 --TATATATATGTTGTCCAATTTGGTGTATAAATGTTGTCCAA
6079136 AACAGGGTAG
Statistics
Matches: 116, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
45 32 0.28
46 33 0.28
47 14 0.12
48 37 0.32
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.44
Consensus pattern (46 bp):
TATATATATGTTGTCCAATTTGGTGTATAAATGTTGTCCAATTTGG
Found at i:6079123 original size:23 final size:23
Alignment explanation
Indices: 6078957--6079135 Score: 171
Period size: 23 Copynumber: 7.7 Consensus size: 23
6078947 ATTCGGTATA
* * *
6078957 TATATATTCTGTTCAATTTGGTG
1 TATATATGCTGTCCAATTTGATG
* * * *
6078980 TATAAAATGTTGTTCAATTTGGTG
1 TAT-ATATGCTGTCCAATTTGATG
* *
6079004 TATATATGTTGTCCAA-TTGGTG
1 TATATATGCTGTCCAATTTGATG
* * *
6079026 TATAAATGTTGTCCAATTTGATT
1 TATATATGCTGTCCAATTTGATG
*
6079049 TATATATGCTGTCCAATTTGGTG
1 TATATATGCTGTCCAATTTGATG
*
6079072 TATATATGCTGTCCAATTTGGTATA
1 TATATATGCTGTCCAATTT-G-ATG
*
6079097 TATATATGCTGTCCGATTTGATG
1 TATATATGCTGTCCAATTTGATG
* *
6079120 TATAAAAGCTGTCCAA
1 TATATATGCTGTCCAA
6079136 AACAGGGTAG
Statistics
Matches: 133, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
22 21 0.16
23 71 0.53
24 22 0.17
25 19 0.14
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.44
Consensus pattern (23 bp):
TATATATGCTGTCCAATTTGATG
Found at i:6114608 original size:507 final size:507
Alignment explanation
Indices: 6113655--6114670 Score: 2032
Period size: 507 Copynumber: 2.0 Consensus size: 507
6113645 TATAGTTAAA
6113655 AGTGTATAAAAATGTACAATTTGGGACATTTTGTTATTTAGTCTCAAGATCGGAATAACATGTCT
1 AGTGTATAAAAATGTACAATTTGGGACATTTTGTTATTTAGTCTCAAGATCGGAATAACATGTCT
6113720 TGAGACCCTAAGCATAAAATGTACCATTTTAGATGTAGTATTGATCTTGGTCGAGAAAATGGAAC
66 TGAGACCCTAAGCATAAAATGTACCATTTTAGATGTAGTATTGATCTTGGTCGAGAAAATGGAAC
6113785 CTATGTCTCGAGATAGAGCAACCTTTGTCTCGAGACAAGTACACATCAAAGCTAAATTAGTTTTG
131 CTATGTCTCGAGATAGAGCAACCTTTGTCTCGAGACAAGTACACATCAAAGCTAAATTAGTTTTG
6113850 CCCTATTATAGGTCTCGAGACAAGAACTCCTTGACTTGAGACAACCAAACATCGAAACTAAAATA
196 CCCTATTATAGGTCTCGAGACAAGAACTCCTTGACTTGAGACAACCAAACATCGAAACTAAAATA
6113915 AGAAATCATGGGAGACTTGTCTCGAGGCTTAGTCTGAAGACACGAAGGACTTGTCTTTAGACATA
261 AGAAATCATGGGAGACTTGTCTCGAGGCTTAGTCTGAAGACACGAAGGACTTGTCTTTAGACATA
6113980 ATGTTAAAACTTGAAAATTGCATTTGGATTCGAATCTCAACTGTCAAATTGACTTAGTCTAAATA
326 ATGTTAAAACTTGAAAATTGCATTTGGATTCGAATCTCAACTGTCAAATTGACTTAGTCTAAATA
6114045 CACTTTATGAATGTATGACTATGCATGAAATGGATAATCGTTTTAATACAAATGATATGATTAAA
391 CACTTTATGAATGTATGACTATGCATGAAATGGATAATCGTTTTAATACAAATGATATGATTAAA
6114110 GAAGTAAGCTAGCTTGAGTTGCTTCAGCAATGTAATGTGACATCACATATTT
456 GAAGTAAGCTAGCTTGAGTTGCTTCAGCAATGTAATGTGACATCACATATTT
6114162 AGTGTATAAAAATGTACAATTTGGGACATTTTGTTATTTAGTCTCAAGATCGGAATAACATGTCT
1 AGTGTATAAAAATGTACAATTTGGGACATTTTGTTATTTAGTCTCAAGATCGGAATAACATGTCT
6114227 TGAGACCCTAAGCATAAAATGTACCATTTTAGATGTAGTATTGATCTTGGTCGAGAAAATGGAAC
66 TGAGACCCTAAGCATAAAATGTACCATTTTAGATGTAGTATTGATCTTGGTCGAGAAAATGGAAC
6114292 CTATGTCTCGAGATAGAGCAACCTTTGTCTCGAGACAAGTACACATCAAAGCTAAATTAGTTTTG
131 CTATGTCTCGAGATAGAGCAACCTTTGTCTCGAGACAAGTACACATCAAAGCTAAATTAGTTTTG
6114357 CCCTATTATAGGTCTCGAGACAAGAACTCCTTGACTTGAGACAACCAAACATCGAAACTAAAATA
196 CCCTATTATAGGTCTCGAGACAAGAACTCCTTGACTTGAGACAACCAAACATCGAAACTAAAATA
6114422 AGAAATCATGGGAGACTTGTCTCGAGGCTTAGTCTGAAGACACGAAGGACTTGTCTTTAGACATA
261 AGAAATCATGGGAGACTTGTCTCGAGGCTTAGTCTGAAGACACGAAGGACTTGTCTTTAGACATA
6114487 ATGTTAAAACTTGAAAATTGCATTTGGATTCGAATCTCAACTGTCAAATTGACTTAGTCTAAATA
326 ATGTTAAAACTTGAAAATTGCATTTGGATTCGAATCTCAACTGTCAAATTGACTTAGTCTAAATA
6114552 CACTTTATGAATGTATGACTATGCATGAAATGGATAATCGTTTTAATACAAATGATATGATTAAA
391 CACTTTATGAATGTATGACTATGCATGAAATGGATAATCGTTTTAATACAAATGATATGATTAAA
6114617 GAAGTAAGCTAGCTTGAGTTGCTTCAGCAATGTAATGTGACATCACATATTT
456 GAAGTAAGCTAGCTTGAGTTGCTTCAGCAATGTAATGTGACATCACATATTT
6114669 AG
1 AG
6114671 ATCTGGCGAC
Statistics
Matches: 509, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
507 509 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.31
Consensus pattern (507 bp):
AGTGTATAAAAATGTACAATTTGGGACATTTTGTTATTTAGTCTCAAGATCGGAATAACATGTCT
TGAGACCCTAAGCATAAAATGTACCATTTTAGATGTAGTATTGATCTTGGTCGAGAAAATGGAAC
CTATGTCTCGAGATAGAGCAACCTTTGTCTCGAGACAAGTACACATCAAAGCTAAATTAGTTTTG
CCCTATTATAGGTCTCGAGACAAGAACTCCTTGACTTGAGACAACCAAACATCGAAACTAAAATA
AGAAATCATGGGAGACTTGTCTCGAGGCTTAGTCTGAAGACACGAAGGACTTGTCTTTAGACATA
ATGTTAAAACTTGAAAATTGCATTTGGATTCGAATCTCAACTGTCAAATTGACTTAGTCTAAATA
CACTTTATGAATGTATGACTATGCATGAAATGGATAATCGTTTTAATACAAATGATATGATTAAA
GAAGTAAGCTAGCTTGAGTTGCTTCAGCAATGTAATGTGACATCACATATTT
Found at i:6118444 original size:3 final size:3
Alignment explanation
Indices: 6118425--6118478 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
6118415 AATGTAAGAG
* * * * *
6118425 AAT AAT AA- AAT ATT AAT AAT AAT TAT AAT AGT AAA AAT AAT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6118472 AAT AAT A
1 AAT AAT A
6118479 GCTAAGTGGG
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:6118581 original size:15 final size:15
Alignment explanation
Indices: 6118561--6118591 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
6118551 AAATATATTA
6118561 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
6118576 ATAATAGTAATAAAT
1 ATAATAGTAATAAAT
6118591 A
1 A
6118592 GAAAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (15 bp):
ATAATAGTAATAAAT
Found at i:6119764 original size:44 final size:44
Alignment explanation
Indices: 6119636--6119967 Score: 351
Period size: 44 Copynumber: 7.5 Consensus size: 44
6119626 TTTTCAATCC
* * ** * *
6119636 ACTTCCTACAAATATAGGAAGGTAGGATCTGCTATCTTTGATCT
1 ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * * * * *
6119680 ACTTCACGCCAATACATGAAGACAAGACCTGCTTTCTTCGATCC
1 ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* *
6119724 ACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCC
1 ACTTC-CCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * * *
6119768 ACTTCCTACCAATATAGGAAGATAGGACCTGATATCTTCGATCT
1 ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * * *
6119812 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
1 ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
*
6119856 ACTTCGCCACCAATATAGGAAGACAAGATCTGATATCTTCGATCT
1 ACTTC-CCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * * *
6119901 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
1 ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
6119945 ACTTCGCCACCAATATAGGAAGA
1 ACTTC-CCACCAATATAGGAAGA
6119968 NNNNNNNNNN
Statistics
Matches: 231, Mismatches: 53, Indels: 7
0.79 0.18 0.02
Matches are distributed among these distances:
43 21 0.09
44 138 0.60
45 72 0.31
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (44 bp):
ACTTCCCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
Found at i:6119783 original size:132 final size:133
Alignment explanation
Indices: 6119632--6119949 Score: 469
Period size: 132 Copynumber: 2.4 Consensus size: 133
6119622 CTATTTTTCA
* * *
6119632 ATCCACTTCCTACAAATATAGGAAGGTAGGATCTGCTATCTTTGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
*
6119697 GAAGACAAGACCTGCTTTCTTCGATCCACTTCGCCACCAATATGGGAAGACAAGATCTG-CATCT
66 GAAGACAAGACCTGCTTTCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGATCTGACATCT
6119761 TCG
131 TCG
* *
6119764 ATCCACTTCCTACCAATATAGGAAGATAGGACCTGATATCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
* * *
6119829 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGATATCT
66 GAAGACAAGACCTGCTTTCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGATCTGACATCT
6119894 TCG
131 TCG
* * * * * * *
6119897 ATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC
1 ATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTC
6119950 GCCACCAATA
Statistics
Matches: 166, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
132 116 0.70
133 49 0.30
134 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (133 bp):
ATCCACTTCCTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
GAAGACAAGACCTGCTTTCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGATCTGACATCT
TCG
Found at i:6119897 original size:89 final size:88
Alignment explanation
Indices: 6119661--6119967 Score: 400
Period size: 89 Copynumber: 3.5 Consensus size: 88
6119651 AGGAAGGTAG
* * * * * * * *
6119661 GATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGACCTGCTTTCTTCGATCCAC
1 GATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGACCTGATATCTTCGATCTAC
* * ***
6119726 TTCGCCACCAATATGGGAAGACAA
66 TTC-ACGCCAATACATGAAGACAA
* * * *
6119750 GATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGATAGGACCTGATATCTTCGATCTAC
1 GATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGACCTGATATCTTCGATCTAC
6119814 TTCACGCCAATACATGAAGACAA
66 TTCACGCCAATACATGAAGACAA
* *
6119837 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGATCTGATATCTTCGATCTA
1 GATCTGCTATCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGACCTGATATCTTCGATCTA
6119902 CTTCACGCCAATACATGAAGACAA
65 CTTCACGCCAATACATGAAGACAA
*
6119926 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATAGGAAGA
1 GATCTGCTATCTTCGATCTACTTC-CCACCAATATAGGAAGA
6119968 NNNNNNNNNN
Statistics
Matches: 193, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
87 22 0.11
88 62 0.32
89 109 0.56
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (88 bp):
GATCTGCTATCTTCGATCTACTTCCCACCAATATAGGAAGACAAGACCTGATATCTTCGATCTAC
TTCACGCCAATACATGAAGACAA
Found at i:6135529 original size:29 final size:29
Alignment explanation
Indices: 6135495--6135552 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
6135485 GATTATTAAA
*
6135495 CTAGTATTATTTTTTAATCTTCTTGAGGG
1 CTAGTATTATTTTTTAATCTTCCTGAGGG
*
6135524 CTAGTATTATTTTTTTATCTTCCTGAGGG
1 CTAGTATTATTTTTTAATCTTCCTGAGGG
6135553 TGTAGTGGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.19, C:0.12, G:0.17, T:0.52
Consensus pattern (29 bp):
CTAGTATTATTTTTTAATCTTCCTGAGGG
Found at i:6137972 original size:10 final size:10
Alignment explanation
Indices: 6137959--6138034 Score: 55
Period size: 10 Copynumber: 7.7 Consensus size: 10
6137949 AAAATTTAAA
*
6137959 AAAAAAATCT
1 AAAAAAATAT
6137969 AAAAAAATAT
1 AAAAAAATAT
** *
6137979 AAAGTAAGAT
1 AAAAAAATAT
* *
6137989 AAAAAATTAA
1 AAAAAAATAT
6137999 AAAAAAATAT
1 AAAAAAATAT
** *
6138009 AAAGTAAGAT
1 AAAAAAATAT
*
6138019 -AAAAAATTT
1 AAAAAAATAT
6138028 AAAAAAA
1 AAAAAAA
6138035 AATTTGTGCT
Statistics
Matches: 47, Mismatches: 18, Indels: 2
0.70 0.27 0.03
Matches are distributed among these distances:
9 5 0.11
10 42 0.89
ACGTcount: A:0.74, C:0.01, G:0.05, T:0.20
Consensus pattern (10 bp):
AAAAAAATAT
Found at i:6137994 original size:19 final size:19
Alignment explanation
Indices: 6137970--6138030 Score: 57
Period size: 19 Copynumber: 3.6 Consensus size: 19
6137960 AAAAAATCTA
6137970 AAAAAATATAAAGTAAGAT
1 AAAAAATATAAAGTAAGAT
6137989 -AAAAA-AT----TAA-A-
1 AAAAAATATAAAGTAAGAT
6138000 AAAAAATATAAAGTAAGAT
1 AAAAAATATAAAGTAAGAT
*
6138019 AAAAAATTTAAA
1 AAAAAATATAAA
6138031 AAAAAATTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 16
0.66 0.02 0.32
Matches are distributed among these distances:
12 6 0.18
13 5 0.15
17 5 0.15
18 6 0.18
19 11 0.33
ACGTcount: A:0.72, C:0.00, G:0.07, T:0.21
Consensus pattern (19 bp):
AAAAAATATAAAGTAAGAT
Found at i:6138010 original size:20 final size:20
Alignment explanation
Indices: 6137939--6138011 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 20
6137929 TATATTTTCT
*
6137939 AAAAAAT-TATAAAATTTAAAA
1 AAAAAATATA-AAAAATT-AAA
* * *
6137960 AAAAAATCTAAAAAAATATA
1 AAAAAATATAAAAAATTAAA
** *
6137980 AAGTAAGATAAAAAATTAAA
1 AAAAAATATAAAAAATTAAA
6138000 AAAAAATATAAA
1 AAAAAATATAAA
6138012 GTAAGATAAA
Statistics
Matches: 39, Mismatches: 12, Indels: 3
0.72 0.22 0.06
Matches are distributed among these distances:
20 25 0.64
21 12 0.31
22 2 0.05
ACGTcount: A:0.74, C:0.01, G:0.03, T:0.22
Consensus pattern (20 bp):
AAAAAATATAAAAAATTAAA
Found at i:6138030 original size:31 final size:30
Alignment explanation
Indices: 6137969--6138037 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
6137959 AAAAAAATCT
6137969 AAAAAAATATAAAGTAAGATAAAAAATTAA
1 AAAAAAATATAAAGTAAGATAAAAAATTAA
6137999 AAAAAAATATAAAGTAAGATAAAAAATTTAA
1 AAAAAAATATAAAGTAAGATAAAAAA-TTAA
6138030 AAAAAAAT
1 AAAAAAAT
6138038 TTGTGCTCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 26 0.68
31 12 0.32
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (30 bp):
AAAAAAATATAAAGTAAGATAAAAAATTAA
Found at i:6138035 original size:30 final size:30
Alignment explanation
Indices: 6137960--6138035 Score: 127
Period size: 30 Copynumber: 2.6 Consensus size: 30
6137950 AAATTTAAAA
*
6137960 AAAAAATCT-AAAAAAATATAAAGTAAGAT
1 AAAAAATTTAAAAAAAATATAAAGTAAGAT
*
6137989 AAAAAATTAAAAAAAAATATAAAGTAAGAT
1 AAAAAATTTAAAAAAAATATAAAGTAAGAT
6138019 AAAAAATTTAAAAAAAA
1 AAAAAATTTAAAAAAAA
6138036 ATTTGTGCTC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
29 7 0.16
30 36 0.84
ACGTcount: A:0.74, C:0.01, G:0.05, T:0.20
Consensus pattern (30 bp):
AAAAAATTTAAAAAAAATATAAAGTAAGAT
Found at i:6142739 original size:22 final size:22
Alignment explanation
Indices: 6142714--6142759 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
6142704 AGTAATATTG
*
6142714 TTGTTTAATGTATTAGATAATT
1 TTGTTTAATGTATAAGATAATT
* *
6142736 TTGTTTGATGTATAAGATATTT
1 TTGTTTAATGTATAAGATAATT
6142758 TT
1 TT
6142760 TTCTTGTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.15, T:0.57
Consensus pattern (22 bp):
TTGTTTAATGTATAAGATAATT
Found at i:6148824 original size:15 final size:16
Alignment explanation
Indices: 6148784--6148824 Score: 50
Period size: 14 Copynumber: 2.6 Consensus size: 16
6148774 GTATGTGGAA
6148784 GGGTTGCTGCTCTACCC
1 GGGTTGCTG-TCTACCC
*
6148801 TGG-TGCTGT-TACCC
1 GGGTTGCTGTCTACCC
6148815 GGGTTGCTGT
1 GGGTTGCTGT
6148825 GATTGCTTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 7 0.33
15 7 0.33
16 5 0.24
17 2 0.10
ACGTcount: A:0.05, C:0.27, G:0.34, T:0.34
Consensus pattern (16 bp):
GGGTTGCTGTCTACCC
Found at i:6154529 original size:12 final size:12
Alignment explanation
Indices: 6154512--6154540 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
6154502 AGATATATAC
6154512 ATATATTTTTAT
1 ATATATTTTTAT
6154524 ATATATTTTTAT
1 ATATATTTTTAT
6154536 ATATA
1 ATATA
6154541 CTTGTACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
ATATATTTTTAT
Found at i:6154556 original size:18 final size:17
Alignment explanation
Indices: 6154533--6154575 Score: 61
Period size: 16 Copynumber: 2.5 Consensus size: 17
6154523 TATATATTTT
6154533 TATATATACTTGTACATA
1 TATATATACTTGTA-ATA
*
6154551 TATATAT-TTTGTAATA
1 TATATATACTTGTAATA
6154567 TATATATAC
1 TATATATAC
6154576 ATATAAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 10 0.45
17 5 0.23
18 7 0.32
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.49
Consensus pattern (17 bp):
TATATATACTTGTAATA
Found at i:6154576 original size:28 final size:27
Alignment explanation
Indices: 6154521--6154580 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 27
6154511 CATATATTTT
*
6154521 TATATATATTTTTATATATACTTGTACA
1 TATATATATTTTTATATATAC-TATACA
6154549 TATATATATTTTGTAATATATA-TATACA
1 TATATATATTTT-T-ATATATACTATACA
6154577 TATA
1 TATA
6154581 AACATACCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 21 0.72
29 1 0.03
30 7 0.24
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (27 bp):
TATATATATTTTTATATATACTATACA
Found at i:6164807 original size:22 final size:20
Alignment explanation
Indices: 6164782--6164823 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
6164772 TCTCAATTGT
6164782 TTCAATCATTGTTAATTATTTA
1 TTCAATC-TTGTT-ATTATTTA
*
6164804 TTCAATCTTGTTCTTATTTA
1 TTCAATCTTGTTATTATTTA
6164824 ATATGTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 5 0.26
22 7 0.37
ACGTcount: A:0.26, C:0.12, G:0.05, T:0.57
Consensus pattern (20 bp):
TTCAATCTTGTTATTATTTA
Found at i:6168386 original size:18 final size:19
Alignment explanation
Indices: 6168344--6168388 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
6168334 TCAAGATCTT
6168344 AAATTAATGTCGTCCAAAG
1 AAATTAATGTCGTCCAAAG
*
6168363 AAATTAATGTGGTCCAAA-
1 AAATTAATGTCGTCCAAAG
6168381 AAATTAAT
1 AAATTAAT
6168389 TAGTACATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (19 bp):
AAATTAATGTCGTCCAAAG
Found at i:6169027 original size:230 final size:230
Alignment explanation
Indices: 6168624--6169084 Score: 913
Period size: 230 Copynumber: 2.0 Consensus size: 230
6168614 TCACTACACT
*
6168624 CTATTATTTGTAATTTTATTTTTTATAAATTTATTCTACATTGTTTTTTATAAAAATCTATTTTT
1 CTATTATTTGTAATTTTATTTTTTATAAATTTATTCTAAATTGTTTTTTATAAAAATCTATTTTT
6168689 CTAATTTTTTCTTTTTTATTTATTAATTCTTGTATAAATTAAAATTTGTTTTAAATTTTTATAAC
66 CTAATTTTTTCTTTTTTATTTATTAATTCTTGTATAAATTAAAATTTGTTTTAAATTTTTATAAC
6168754 TATTGATTTTTCGTCATAATTTGTAGTGTTCAACAAAATATGTCCAATTTTTACGGAAGTAACTT
131 TATTGATTTTTCGTCATAATTTGTAGTGTTCAACAAAATATGTCCAATTTTTACGGAAGTAACTT
6168819 AAATGAAGGCAATGAGATCTCTATGGCGACATCAC
196 AAATGAAGGCAATGAGATCTCTATGGCGACATCAC
6168854 CTATTATTTGTAATTTTATTTTTTATAAATTTATTCTAAATTGTTTTTTATAAAAATCTATTTTT
1 CTATTATTTGTAATTTTATTTTTTATAAATTTATTCTAAATTGTTTTTTATAAAAATCTATTTTT
6168919 CTAATTTTTTCTTTTTTATTTATTAATTCTTGTATAAATTAAAATTTGTTTTAAATTTTTATAAC
66 CTAATTTTTTCTTTTTTATTTATTAATTCTTGTATAAATTAAAATTTGTTTTAAATTTTTATAAC
6168984 TATTGATTTTTCGTCATAATTTGTAGTGTTCAACAAAATATGTCCAATTTTTACGGAAGTAACTT
131 TATTGATTTTTCGTCATAATTTGTAGTGTTCAACAAAATATGTCCAATTTTTACGGAAGTAACTT
6169049 AAATGAAGGCAATGAGATCTCTATGGCGACATCAC
196 AAATGAAGGCAATGAGATCTCTATGGCGACATCAC
6169084 C
1 C
6169085 ATTTTTTACC
Statistics
Matches: 230, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
230 230 1.00
ACGTcount: A:0.31, C:0.10, G:0.09, T:0.49
Consensus pattern (230 bp):
CTATTATTTGTAATTTTATTTTTTATAAATTTATTCTAAATTGTTTTTTATAAAAATCTATTTTT
CTAATTTTTTCTTTTTTATTTATTAATTCTTGTATAAATTAAAATTTGTTTTAAATTTTTATAAC
TATTGATTTTTCGTCATAATTTGTAGTGTTCAACAAAATATGTCCAATTTTTACGGAAGTAACTT
AAATGAAGGCAATGAGATCTCTATGGCGACATCAC
Found at i:6175038 original size:26 final size:25
Alignment explanation
Indices: 6175007--6175061 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
6174997 GCCCATTTTT
*
6175007 AATAAACACCAAAAAAATATTTTAAA
1 AATAAA-AACAAAAAAATATTTTAAA
* *
6175033 AATAAAAATAAAAAATTATTTTAAA
1 AATAAAAACAAAAAAATATTTTAAA
6175058 AATA
1 AATA
6175062 TTTTAAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 20 0.77
26 6 0.23
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.27
Consensus pattern (25 bp):
AATAAAAACAAAAAAATATTTTAAA
Found at i:6175750 original size:45 final size:45
Alignment explanation
Indices: 6175684--6175772 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 45
6175674 ATCAAACATA
6175684 AATAATATTAATTATGTTATAAATAA-ACAA-AATAAACACATTAAC
1 AATAATATTAATTATGTTAT-AATAATACAATAATAAACA-ATTAAC
*
6175729 AATAATATT-ATTGAT-TATATAATAATATAATAATAAACAATTAA
1 AATAATATTAATT-ATGT-TATAATAATACAATAATAAACAATTAA
6175773 TTAAACGATA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
44 9 0.23
45 22 0.56
46 8 0.21
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (45 bp):
AATAATATTAATTATGTTATAATAATACAATAATAAACAATTAAC
Found at i:6183709 original size:14 final size:14
Alignment explanation
Indices: 6183690--6183719 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6183680 ATATCTAAAC
6183690 AATAACAATAGAAT
1 AATAACAATAGAAT
*
6183704 AATAACAATATAAT
1 AATAACAATAGAAT
6183718 AA
1 AA
6183720 CAAAATTACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.03, T:0.23
Consensus pattern (14 bp):
AATAACAATAGAAT
Found at i:6183746 original size:11 final size:11
Alignment explanation
Indices: 6183701--6183745 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
6183691 ATAACAATAG
6183701 AATAATAACAA
1 AATAATAACAA
*
6183712 TATAATAACAA
1 AATAATAACAA
* *
6183723 AATTACAACAA
1 AATAATAACAA
6183734 AATAATAA-AA
1 AATAATAACAA
6183744 AA
1 AA
6183746 ACAACAATAA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
10 4 0.14
11 24 0.86
ACGTcount: A:0.71, C:0.09, G:0.00, T:0.20
Consensus pattern (11 bp):
AATAATAACAA
Found at i:6183749 original size:19 final size:21
Alignment explanation
Indices: 6183707--6183752 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
6183697 ATAGAATAAT
*
6183707 AACAATATAATAACAAAATTAC
1 AACAAAATAATAACAAAA-TAC
6183729 AACAAAATAATAA-AAAA-AC
1 AACAAAATAATAACAAAATAC
6183748 AACAA
1 AACAA
6183753 TAAAAAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 7 0.30
21 4 0.17
22 12 0.52
ACGTcount: A:0.72, C:0.13, G:0.00, T:0.15
Consensus pattern (21 bp):
AACAAAATAATAACAAAATAC
Found at i:6183757 original size:22 final size:22
Alignment explanation
Indices: 6183707--6183761 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
6183697 ATAGAATAAT
* * **
6183707 AACAATATAATAACAAAATTAC
1 AACAAAATAATAAAAAAACAAC
6183729 AACAAAATAATAAAAAAACAAC
1 AACAAAATAATAAAAAAACAAC
*
6183751 AATAAAA-AATA
1 AACAAAATAATA
6183762 TTTAGGTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.73, C:0.11, G:0.00, T:0.16
Consensus pattern (22 bp):
AACAAAATAATAAAAAAACAAC
Found at i:6198920 original size:25 final size:25
Alignment explanation
Indices: 6198891--6198939 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
6198881 TAATAAATGC
*
6198891 AATTGTGGACCATAATGCAAATATA
1 AATTGTGAACCATAATGCAAATATA
6198916 AATTGTGAACCATAATGCAAATAT
1 AATTGTGAACCATAATGCAAATAT
6198940 TTTGTAACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (25 bp):
AATTGTGAACCATAATGCAAATATA
Found at i:6199356 original size:17 final size:19
Alignment explanation
Indices: 6199337--6199375 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
6199327 TACATTAATA
6199337 TTTA-TTTAATATTAAAAT
1 TTTATTTTAATATTAAAAT
6199355 TTTATTTTAATA--AAAAT
1 TTTATTTTAATATTAAAAT
6199372 TTTA
1 TTTA
6199376 AAATAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 9 0.45
18 4 0.20
19 7 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTATTTTAATATTAAAAT
Found at i:6204243 original size:963 final size:963
Alignment explanation
Indices: 6202377--6204303 Score: 3854
Period size: 963 Copynumber: 2.0 Consensus size: 963
6202367 GATCTAGTAT
6202377 TAAAGATGGAGAATCAATTTTTTATATGTGTTTATTTCGATGGAGAAATTTTGACAACCGTGGGA
1 TAAAGATGGAGAATCAATTTTTTATATGTGTTTATTTCGATGGAGAAATTTTGACAACCGTGGGA
6202442 TGTATATTTGAATGTCGCAAACAAGTAGCAATGAGATTTAATAGAAATATCTCGTTTGATGATAT
66 TGTATATTTGAATGTCGCAAACAAGTAGCAATGAGATTTAATAGAAATATCTCGTTTGATGATAT
6202507 GAAGGAAAAAATAAGTGAAAAAATTTATAGACGTTATGGGAGAAGGATATCAAAACTTTTCTACA
131 GAAGGAAAAAATAAGTGAAAAAATTTATAGACGTTATGGGAGAAGGATATCAAAACTTTTCTACA
6202572 AGTTTCCAGTTTCGACAGATCTAATAAAAAATATCGAAATAGAACTTGTAGACGATGAAGACGTG
196 AGTTTCCAGTTTCGACAGATCTAATAAAAAATATCGAAATAGAACTTGTAGACGATGAAGACGTG
6202637 GAGACAATTGTCGCTCTTTATTGTGGGACTCGGAGCAACCAAAATGCACCAATTCAGTTATTTAC
261 GAGACAATTGTCGCTCTTTATTGTGGGACTCGGAGCAACCAAAATGCACCAATTCAGTTATTTAC
6202702 TGAGTTAGCTGGTGTGGAGGCAATTGAAGATCCCACTCCATTAGGTGAAGAAGATGGAGTTCAAG
326 TGAGTTAGCTGGTGTGGAGGCAATTGAAGATCCCACTCCATTAGGTGAAGAAGATGGAGTTCAAG
6202767 CTTTGTGTATGGTGGTTCCAGTGTCGTATGTTGATAGGCAATCAACTATACACGGGATCGATATT
391 CTTTGTGTATGGTGGTTCCAGTGTCGTATGTTGATAGGCAATCAACTATACACGGGATCGATATT
6202832 GATCTTAATGCTGCACCCGAGACTGGTGTGGTTGGTATTGATGTATACTATAGTAGTGATCCTGT
456 GATCTTAATGCTGCACCCGAGACTGGTGTGGTTGGTATTGATGTATACTATAGTAGTGATCCTGT
6202897 TGATCACGAAGTTAGTAGTGAGAGTGATCCCCACATAGACGAGGTCCCAGATGATATTGACGACG
521 TGATCACGAAGTTAGTAGTGAGAGTGATCCCCACATAGACGAGGTCCCAGATGATATTGACGACG
6202962 AAGGCGTGAATGAGGATGGAAACATTAACGCGTTTTCAGTCGGAAATCAGATTCGTCGTATTGTG
586 AAGGCGTGAATGAGGATGGAAACATTAACGCGTTTTCAGTCGGAAATCAGATTCGTCGTATTGTG
6203027 ATACACAATAATCCTGGGGTATACATGTCTCGGATAGACCCCGATGCGGTGCGGGCAGCCGAGTT
651 ATACACAATAATCCTGGGGTATACATGTCTCGGATAGACCCCGATGCGGTGCGGGCAGCCGAGTT
6203092 TCTGGAGTACCCTGAAATACTACCTGTTTATCGGATGACCGTATATTCTGATCCAGAGGAGTTAT
716 TCTGGAGTACCCTGAAATACTACCTGTTTATCGGATGACCGTATATTCTGATCCAGAGGAGTTAT
6203157 TCGTGGGCCAGAGATTTGAAAGTAAGGAATAATGCATATTTGCCATTAAGCGGTATAGCATGAAT
781 TCGTGGGCCAGAGATTTGAAAGTAAGGAATAATGCATATTTGCCATTAAGCGGTATAGCATGAAT
6203222 ATATCAGTAGACTACAAAGTCGTCGTGTCTAAACCAACATTATATATTGGAGAGTGTTGGAGGTC
846 ATATCAGTAGACTACAAAGTCGTCGTGTCTAAACCAACATTATATATTGGAGAGTGTTGGAGGTC
6203287 GACAAAAGGCTGCAATTGGTGGATATGAGCTGTATTTATCTAGAAGTCGCAGA
911 GACAAAAGGCTGCAATTGGTGGATATGAGCTGTATTTATCTAGAAGTCGCAGA
6203340 TAAAGATGGAGAATCAATTTTTTATATGTGTTTATTTCGATGGAGAAATTTTGACAACCGTGGGA
1 TAAAGATGGAGAATCAATTTTTTATATGTGTTTATTTCGATGGAGAAATTTTGACAACCGTGGGA
6203405 TGTATATTTGAATGTCGCAAACAAGTAGCAATGAGATTTAATAGAAATATCTCGTTTGATGATAT
66 TGTATATTTGAATGTCGCAAACAAGTAGCAATGAGATTTAATAGAAATATCTCGTTTGATGATAT
6203470 GAAGGAAAAAATAAGTGAAAAAATTTATAGACGTTATGGGAGAAGGATATCAAAACTTTTCTACA
131 GAAGGAAAAAATAAGTGAAAAAATTTATAGACGTTATGGGAGAAGGATATCAAAACTTTTCTACA
6203535 AGTTTCCAGTTTCGACAGATCTAATAAAAAATATCGAAATAGAACTTGTAGACGATGAAGACGTG
196 AGTTTCCAGTTTCGACAGATCTAATAAAAAATATCGAAATAGAACTTGTAGACGATGAAGACGTG
6203600 GAGACAATTGTCGCTCTTTATTGTGGGACTCGGAGCAACCAAAATGCACCAATTCAGTTATTTAC
261 GAGACAATTGTCGCTCTTTATTGTGGGACTCGGAGCAACCAAAATGCACCAATTCAGTTATTTAC
6203665 TGAGTTAGCTGGTGTGGAGGCAATTGAAGATCCCACTCCATTAGGTGAAGAAGATGGAGTTCAAG
326 TGAGTTAGCTGGTGTGGAGGCAATTGAAGATCCCACTCCATTAGGTGAAGAAGATGGAGTTCAAG
6203730 CTTTGTGTATGGTGGTTCCAGTGTCGTATGTTGATAGGCAATCAACTATACACGGGATCGATATT
391 CTTTGTGTATGGTGGTTCCAGTGTCGTATGTTGATAGGCAATCAACTATACACGGGATCGATATT
6203795 GATCTTAATGCTGCACCCGAGACTGGTGTGGTTGGTATTGATGTATACTATAGTAGTGATCCTGT
456 GATCTTAATGCTGCACCCGAGACTGGTGTGGTTGGTATTGATGTATACTATAGTAGTGATCCTGT
6203860 TGATCACGAAGTTAGTAGTGAGAGTGATCCCCACATAGACGAGGTCCCAGATGATATTGACGACG
521 TGATCACGAAGTTAGTAGTGAGAGTGATCCCCACATAGACGAGGTCCCAGATGATATTGACGACG
6203925 AAGGCGTGAATGAGGATGGAAACATTAACGCGTTTTCAGTCGGAAATCAGATTCGTCGTATTGTG
586 AAGGCGTGAATGAGGATGGAAACATTAACGCGTTTTCAGTCGGAAATCAGATTCGTCGTATTGTG
6203990 ATACACAATAATCCTGGGGTATACATGTCTCGGATAGACCCCGATGCGGTGCGGGCAGCCGAGTT
651 ATACACAATAATCCTGGGGTATACATGTCTCGGATAGACCCCGATGCGGTGCGGGCAGCCGAGTT
6204055 TCTGGAGTACCCTGAAATACTACCTGTTTATCGGATGACCGTATATTCTGATCCAGAGGAGTTAT
716 TCTGGAGTACCCTGAAATACTACCTGTTTATCGGATGACCGTATATTCTGATCCAGAGGAGTTAT
6204120 TCGTGGGCCAGAGATTTGAAAGTAAGGAATAATGCATATTTGCCATTAAGCGGTATAGCATGAAT
781 TCGTGGGCCAGAGATTTGAAAGTAAGGAATAATGCATATTTGCCATTAAGCGGTATAGCATGAAT
6204185 ATATCAGTAGACTACAAAGTCGTCGTGTCTAAACCAACATTATATATTGGAGAGTGTTGGAGGTC
846 ATATCAGTAGACTACAAAGTCGTCGTGTCTAAACCAACATTATATATTGGAGAGTGTTGGAGGTC
6204250 GACAAAAGGCTGCAATTGGTGGATATGAGCTGTATTTATCTAGAAGTCGCAGA
911 GACAAAAGGCTGCAATTGGTGGATATGAGCTGTATTTATCTAGAAGTCGCAGA
6204303 T
1 T
6204304 GTGGGAGATA
Statistics
Matches: 964, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
963 964 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (963 bp):
TAAAGATGGAGAATCAATTTTTTATATGTGTTTATTTCGATGGAGAAATTTTGACAACCGTGGGA
TGTATATTTGAATGTCGCAAACAAGTAGCAATGAGATTTAATAGAAATATCTCGTTTGATGATAT
GAAGGAAAAAATAAGTGAAAAAATTTATAGACGTTATGGGAGAAGGATATCAAAACTTTTCTACA
AGTTTCCAGTTTCGACAGATCTAATAAAAAATATCGAAATAGAACTTGTAGACGATGAAGACGTG
GAGACAATTGTCGCTCTTTATTGTGGGACTCGGAGCAACCAAAATGCACCAATTCAGTTATTTAC
TGAGTTAGCTGGTGTGGAGGCAATTGAAGATCCCACTCCATTAGGTGAAGAAGATGGAGTTCAAG
CTTTGTGTATGGTGGTTCCAGTGTCGTATGTTGATAGGCAATCAACTATACACGGGATCGATATT
GATCTTAATGCTGCACCCGAGACTGGTGTGGTTGGTATTGATGTATACTATAGTAGTGATCCTGT
TGATCACGAAGTTAGTAGTGAGAGTGATCCCCACATAGACGAGGTCCCAGATGATATTGACGACG
AAGGCGTGAATGAGGATGGAAACATTAACGCGTTTTCAGTCGGAAATCAGATTCGTCGTATTGTG
ATACACAATAATCCTGGGGTATACATGTCTCGGATAGACCCCGATGCGGTGCGGGCAGCCGAGTT
TCTGGAGTACCCTGAAATACTACCTGTTTATCGGATGACCGTATATTCTGATCCAGAGGAGTTAT
TCGTGGGCCAGAGATTTGAAAGTAAGGAATAATGCATATTTGCCATTAAGCGGTATAGCATGAAT
ATATCAGTAGACTACAAAGTCGTCGTGTCTAAACCAACATTATATATTGGAGAGTGTTGGAGGTC
GACAAAAGGCTGCAATTGGTGGATATGAGCTGTATTTATCTAGAAGTCGCAGA
Found at i:6208445 original size:55 final size:54
Alignment explanation
Indices: 6208378--6208490 Score: 172
Period size: 55 Copynumber: 2.1 Consensus size: 54
6208368 TTATTTAAAC
* * *
6208378 AAAAAATATTTTTAATATAAAAAATTGATTCGCGCCTATTAGATAGGCGCGATT
1 AAAAAATATTTTTAATATAAAAAATTGATTCGCGCCTATCAAATAGGCGCAATT
* *
6208432 AAAAAATATTTTTTAATATAAAAAATTGATTCGCGTCTGTCAAATAGGCGCAATT
1 AAAAAATA-TTTTTAATATAAAAAATTGATTCGCGCCTATCAAATAGGCGCAATT
6208487 AAAA
1 AAAA
6208491 TTTTTTTTAA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
54 8 0.15
55 45 0.85
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (54 bp):
AAAAAATATTTTTAATATAAAAAATTGATTCGCGCCTATCAAATAGGCGCAATT
Found at i:6208867 original size:60 final size:60
Alignment explanation
Indices: 6208801--6208930 Score: 215
Period size: 60 Copynumber: 2.2 Consensus size: 60
6208791 AACTAAACAC
* * *
6208801 AACACAACAATTTATAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTACA
1 AACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTACA
*
6208861 AACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTATA
1 AACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTACA
*
6208921 AAAACAAAAA
1 AACACAAAAA
6208931 AATTACAATA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 65 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.32
Consensus pattern (60 bp):
AACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTACA
Found at i:6209043 original size:13 final size:14
Alignment explanation
Indices: 6209027--6209063 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
6209017 TTTTTTTTTC
6209027 TTCT-TCTTCTCCT
1 TTCTCTCTTCTCCT
*
6209040 TTCTCTCTT-TTCT
1 TTCTCTCTTCTCCT
6209053 TTCTCTCTTCT
1 TTCTCTCTTCT
6209064 GATGATACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 16 0.76
14 5 0.24
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (14 bp):
TTCTCTCTTCTCCT
Found at i:6209391 original size:23 final size:24
Alignment explanation
Indices: 6209347--6209391 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
6209337 TAATAAAAAT
* * *
6209347 AAAAAATAATATTTTATTTAAACC
1 AAAAAATAAAATTTAATATAAACC
6209371 AAAAAA-AAAATTTAATATAAA
1 AAAAAATAAAATTTAATATAAA
6209392 AAATTCATTG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 12 0.67
24 6 0.33
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.31
Consensus pattern (24 bp):
AAAAAATAAAATTTAATATAAACC
Found at i:6225993 original size:21 final size:21
Alignment explanation
Indices: 6225969--6226009 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
6225959 CTGTAAAGAT
6225969 CCCTCTCTCCGCCGTCTCCAG
1 CCCTCTCTCCGCCGTCTCCAG
*
6225990 CCCTTTCTCCGCCGTCTCCA
1 CCCTCTCTCCGCCGTCTCCA
6226010 ATCCTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.05, C:0.56, G:0.12, T:0.27
Consensus pattern (21 bp):
CCCTCTCTCCGCCGTCTCCAG
Found at i:6226015 original size:21 final size:21
Alignment explanation
Indices: 6225969--6226015 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
6225959 CTGTAAAGAT
* *
6225969 CCCTCTCTCCGCCGTCTCCAG
1 CCCTTTCTCCGCCGTCTCCAA
6225990 CCCTTTCTCCGCCGTCTCCAA
1 CCCTTTCTCCGCCGTCTCCAA
*
6226011 TCCTT
1 CCCTT
6226016 CTTTCACGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.06, C:0.53, G:0.11, T:0.30
Consensus pattern (21 bp):
CCCTTTCTCCGCCGTCTCCAA
Found at i:6248807 original size:13 final size:13
Alignment explanation
Indices: 6248789--6248814 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6248779 TGAGAAGATT
6248789 TTGAATTTGGTAC
1 TTGAATTTGGTAC
6248802 TTGAATTTGGTAC
1 TTGAATTTGGTAC
6248815 CTTTTTAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (13 bp):
TTGAATTTGGTAC
Found at i:6252735 original size:8 final size:9
Alignment explanation
Indices: 6252714--6252742 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
6252704 AGGATATGTG
6252714 GGGGGAAGT
1 GGGGGAAGT
6252723 GGGGGAAGT
1 GGGGGAAGT
6252732 GGGGGAAGT
1 GGGGGAAGT
6252741 GG
1 GG
6252743 ATGAGCAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.69, T:0.10
Consensus pattern (9 bp):
GGGGGAAGT
Found at i:6254022 original size:21 final size:21
Alignment explanation
Indices: 6253970--6254048 Score: 58
Period size: 21 Copynumber: 3.8 Consensus size: 21
6253960 ATTTAATTTA
*
6253970 ATTTAATATCT-ATGTTAATAGT
1 ATTTAATAT-TAAT-TTAATAAT
6253992 ATTT--TATTAATTTAATAAT
1 ATTTAATATTAATTTAATAAT
**
6254011 ATTTAATATTAAAGTAATTAA-
1 ATTTAATATTAATTTAA-TAAT
* *
6254032 GTTTAATAATAATTTAA
1 ATTTAATATTAATTTAA
6254049 CTCTCCCTAT
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
19 12 0.26
20 5 0.11
21 22 0.48
22 7 0.15
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (21 bp):
ATTTAATATTAATTTAATAAT
Found at i:6254786 original size:4 final size:4
Alignment explanation
Indices: 6254777--6254806 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
6254767 GAAGAAGAAG
6254777 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA
6254807 AAATGTAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:6254965 original size:21 final size:21
Alignment explanation
Indices: 6254940--6254981 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
6254930 TGGATTAGTA
6254940 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
6254961 TTTTGTATGAATATTGTAATT
1 TTTTGTATGAATATTGTAATT
6254982 ATCTTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (21 bp):
TTTTGTATGAATATTGTAATT
Found at i:6255053 original size:60 final size:60
Alignment explanation
Indices: 6254974--6255095 Score: 192
Period size: 60 Copynumber: 2.0 Consensus size: 60
6254964 TGTATGAATA
* * *
6254974 TTGTAATTATCTTATAATTAATTTGTTAGTAATTTAGGATT-ATGTTATAAATTTTTGTGT
1 TTGTAATTATCTTAAAATTAATTTATTAGTAATTTAGGATTAAT-TTATAAATTGTTGTGT
*
6255034 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAATTTATAAATTGTTGTGT
1 TTGTAATTATCTTAAAATTAATTTATTAGTAATTTAGGATTAATTTATAAATTGTTGTGT
6255094 TT
1 TT
6255096 AGTTTAGTAT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
60 55 0.96
61 2 0.04
ACGTcount: A:0.32, C:0.01, G:0.12, T:0.55
Consensus pattern (60 bp):
TTGTAATTATCTTAAAATTAATTTATTAGTAATTTAGGATTAATTTATAAATTGTTGTGT
Found at i:6258437 original size:17 final size:17
Alignment explanation
Indices: 6258415--6258449 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
6258405 AACTTACTCA
*
6258415 TCGATGCCAACGCCATG
1 TCGATGCAAACGCCATG
6258432 TCGATGCAAACGCCATG
1 TCGATGCAAACGCCATG
6258449 T
1 T
6258450 TCCAGACATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (17 bp):
TCGATGCAAACGCCATG
Found at i:6258505 original size:50 final size:51
Alignment explanation
Indices: 6258443--6258565 Score: 221
Period size: 50 Copynumber: 2.4 Consensus size: 51
6258433 CGATGCAAAC
*
6258443 GCCATGTTCCAGACATGGTCTTACATGGGACCTCTCATCTCGGT-GCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGGCCAAT
*
6258493 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGGCCAAT
6258544 GCCATGTCCCAGACATGGTCTT
1 GCCATGTCCCAGACATGGTCTT
6258566 NTTTGTATCC
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.19, C:0.32, G:0.23, T:0.27
Consensus pattern (51 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGGCCAAT
Found at i:6258935 original size:29 final size:30
Alignment explanation
Indices: 6258885--6258941 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
6258875 CCTCGACTCT
* *
6258885 AACTTTTTCAAAATTATGATTTTGCCCCTA
1 AACTTTTACAAAATTATCATTTTGCCCCTA
* *
6258915 AACTTTTACATAATTA-CATTTTTCCCC
1 AACTTTTACAAAATTATCATTTTGCCCC
6258942 AAGGCTCGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 9 0.39
30 14 0.61
ACGTcount: A:0.30, C:0.23, G:0.04, T:0.44
Consensus pattern (30 bp):
AACTTTTACAAAATTATCATTTTGCCCCTA
Found at i:6259624 original size:13 final size:13
Alignment explanation
Indices: 6259606--6259637 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6259596 TTTCCAGCAA
6259606 TTATGAATTTATT
1 TTATGAATTTATT
6259619 TTATGAATTTATT
1 TTATGAATTTATT
*
6259632 TGATGA
1 TTATGA
6259638 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:6259952 original size:50 final size:50
Alignment explanation
Indices: 6259838--6260080 Score: 351
Period size: 50 Copynumber: 4.8 Consensus size: 50
6259828 GATAATAACA
* * **
6259838 TGCCAAAGCCATGTTCCAGACATGGTCTTACATGGGATGTTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * * *
6259889 TGCCCATGCCATGTCCCAAACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
6259939 TGCCAACGACATGTCCCAGACATGGTCTTATATGGGACCTCTCATCTCGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
6259989 TACCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
6260039 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
6260081 TTACCCAAAT
Statistics
Matches: 172, Mismatches: 20, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 141 0.82
51 31 0.18
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:6266837 original size:27 final size:27
Alignment explanation
Indices: 6266794--6266870 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
6266784 AGACCATTGT
* *
6266794 CGCCTCTCAACAT-GGCACAACTAATGG
1 CGCCTCT-AAGATAGGCACCACTAATGG
* * *
6266821 CGCCTGC-CAGATAGGCACCACCATTGG
1 CGCCT-CTAAGATAGGCACCACTAATGG
6266848 CGCCTCTAAGATAGGCACCACTA
1 CGCCTCTAAGATAGGCACCACTA
6266871 CTTTGTATTA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
26 4 0.10
27 35 0.88
28 1 0.03
ACGTcount: A:0.27, C:0.35, G:0.21, T:0.17
Consensus pattern (27 bp):
CGCCTCTAAGATAGGCACCACTAATGG
Found at i:6270974 original size:19 final size:18
Alignment explanation
Indices: 6270934--6270976 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
6270924 TTAGAATTCT
6270934 TTAAAA-ATAATAATAAA
1 TTAAAATATAATAATAAA
6270951 TTAAAATATAATTAA-AATA
1 TTAAAATATAA-TAATAA-A
6270970 TTAAAAT
1 TTAAAAT
6270977 TGCTATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.26
18 6 0.26
19 11 0.48
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAAAATATAATAATAAA
Found at i:6271418 original size:17 final size:17
Alignment explanation
Indices: 6271389--6271430 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
6271379 CCAACTGATT
6271389 ATTTTATTAATTTATTAG
1 ATTTTA-TAATTTATTAG
6271407 ATTTTATAATTTATTAG
1 ATTTTATAATTTATTAG
*
6271424 ATGTTAT
1 ATTTTAT
6271431 TTTTTTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 17 0.74
18 6 0.26
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (17 bp):
ATTTTATAATTTATTAG
Found at i:6271494 original size:15 final size:16
Alignment explanation
Indices: 6271476--6271505 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
6271466 CATTTTTAGT
6271476 ATTTTTTAAT-ATTTG
1 ATTTTTTAATGATTTG
6271491 ATTTTTTAATGATTT
1 ATTTTTTAATGATTT
6271506 TTTAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (16 bp):
ATTTTTTAATGATTTG
Found at i:6271829 original size:11 final size:11
Alignment explanation
Indices: 6271799--6271861 Score: 58
Period size: 11 Copynumber: 5.7 Consensus size: 11
6271789 CCGGCCTATT
6271799 TTTTAATAAATA
1 TTTTAA-AAATA
*
6271811 -TTAAAAAATTA
1 TTTTAAAAA-TA
6271822 TTTTAAAAATA
1 TTTTAAAAATA
**
6271833 -AATAAAAATA
1 TTTTAAAAATA
*
6271843 TTTTAAAAGTA
1 TTTTAAAAATA
6271854 TTTTAAAA
1 TTTTAAAA
6271862 TTAAAAAATA
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
10 11 0.27
11 23 0.56
12 7 0.17
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (11 bp):
TTTTAAAAATA
Found at i:6271843 original size:32 final size:32
Alignment explanation
Indices: 6271806--6271866 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
6271796 ATTTTTTAAT
*
6271806 AAATATTAAAAAATTATTTTAAAAATAAATAA
1 AAATATTAAAAAAGTATTTTAAAAATAAATAA
** *
6271838 AAATATTTTAAAAGTATTTTAAAATTAAA
1 AAATATTAAAAAAGTATTTTAAAAATAAA
6271867 AAATAAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (32 bp):
AAATATTAAAAAAGTATTTTAAAAATAAATAA
Found at i:6271879 original size:13 final size:13
Alignment explanation
Indices: 6271857--6271889 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
6271847 AAAAGTATTT
*
6271857 TAAAATTAAAAAA
1 TAAAAATAAAAAA
6271870 TAAAAAT-AAAAA
1 TAAAAATAAAAAA
6271882 TAAAAATA
1 TAAAAATA
6271890 TATATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 12 0.67
13 6 0.33
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
TAAAAATAAAAAA
Found at i:6271880 original size:5 final size:6
Alignment explanation
Indices: 6271865--6271889 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
6271855 TTTAAAATTA
6271865 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
6271890 TATATTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:6272279 original size:25 final size:23
Alignment explanation
Indices: 6272218--6272279 Score: 56
Period size: 25 Copynumber: 2.6 Consensus size: 23
6272208 ATATATATGA
6272218 AATATAAAATT-TAAATATTTTTT
1 AATAT-AAATTATAAATATTTTTT
*
6272241 AAGTAATTAA-TATAAATTATTTTTT
1 AA-T-ATAAATTATAAA-TATTTTTT
6272266 GAATATAAATTATA
1 -AATATAAATTATA
6272280 TTTTAGATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
23 3 0.10
24 11 0.35
25 15 0.48
26 2 0.06
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (23 bp):
AATATAAATTATAAATATTTTTT
Found at i:6272293 original size:19 final size:18
Alignment explanation
Indices: 6272249--6272286 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
6272239 TTAAGTAATT
*
6272249 AATATAAATTATTTTTTG
1 AATATAAATTATTTTTAG
6272267 AATATAAATTATATTTTAG
1 AATATAAATTAT-TTTTAG
6272286 A
1 A
6272287 TATTAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (18 bp):
AATATAAATTATTTTTAG
Found at i:6280009 original size:16 final size:17
Alignment explanation
Indices: 6279983--6280015 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
6279973 TCACATTAAC
6279983 AATTATTTAATTTTTTT
1 AATTATTTAATTTTTTT
6280000 AATT-TTTAATTTTTTT
1 AATTATTTAATTTTTTT
6280016 TGAATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
AATTATTTAATTTTTTT
Found at i:6280013 original size:17 final size:17
Alignment explanation
Indices: 6279983--6280024 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 17
6279973 TCACATTAAC
6279983 AATTATTTAATTTTTTT-
1 AATT-TTTAATTTTTTTG
6280000 AATTTTTAATTTTTTTTG
1 AATTTTTAA-TTTTTTTG
6280018 AATTTTT
1 AATTTTT
6280025 TAAAATTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.22
17 11 0.48
18 7 0.30
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (17 bp):
AATTTTTAATTTTTTTG
Found at i:6282257 original size:15 final size:14
Alignment explanation
Indices: 6282235--6282273 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
6282225 GTAAAAGTAG
6282235 ATAATTAAATTATA
1 ATAATTAAATTATA
* *
6282249 TTAAATTAAAATATA
1 AT-AATTAAATTATA
6282264 ATAATTAAAT
1 ATAATTAAAT
6282274 CTCAAAAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAATTAAATTATA
Found at i:6288196 original size:13 final size:13
Alignment explanation
Indices: 6288178--6288203 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6288168 TGTTTTATAT
6288178 TATAAAAATTTGA
1 TATAAAAATTTGA
6288191 TATAAAAATTTGA
1 TATAAAAATTTGA
6288204 AATATATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (13 bp):
TATAAAAATTTGA
Found at i:6288643 original size:81 final size:80
Alignment explanation
Indices: 6288482--6288643 Score: 184
Period size: 81 Copynumber: 2.0 Consensus size: 80
6288472 TTAGCCCCCA
* * *
6288482 AAAATGAAAATTTTCAATTTAGTCTTATTATAAACAAAGAAACTATAAATTAATATAGAAAAATT
1 AAAATGAAAACTTTCAATTCAGTCCTATTATAAACAAAGAAACTATAAATTAATATAGAAAAATT
* *
6288547 GCACTTTGACCCCTC
66 ACACTTTGACACCTC
* * * * * *
6288562 AAAATGAAAAACTTTCAATTCATTCCTCTTATAAATAAGGAAATTATAAATTAATATATAGTAAA
1 AAAATG-AAAACTTTCAATTCAGTCCTATTATAAACAAAGAAACTATAAATT-A-ATATAGAAAA
6288627 ATTACACTTT-A-ACCTC
63 ATTACACTTTGACACCTC
6288643 A
1 A
6288644 TAAAACTAAC
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
80 6 0.09
81 42 0.62
82 2 0.03
83 18 0.26
ACGTcount: A:0.47, C:0.14, G:0.06, T:0.33
Consensus pattern (80 bp):
AAAATGAAAACTTTCAATTCAGTCCTATTATAAACAAAGAAACTATAAATTAATATAGAAAAATT
ACACTTTGACACCTC
Found at i:6291135 original size:26 final size:27
Alignment explanation
Indices: 6291101--6291176 Score: 145
Period size: 27 Copynumber: 2.9 Consensus size: 27
6291091 AATGTGAAGG
6291101 GGGTTGCTAAGTGCTGATTCCCCC-AA
1 GGGTTGCTAAGTGCTGATTCCCCCAAA
6291127 GGGTTGCTAAGTGCTGATTCCCCCAAA
1 GGGTTGCTAAGTGCTGATTCCCCCAAA
6291154 GGGTTGCTAAGTGCTGATTCCCC
1 GGGTTGCTAAGTGCTGATTCCCC
6291177 GATTTATTGG
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
26 24 0.49
27 25 0.51
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.28
Consensus pattern (27 bp):
GGGTTGCTAAGTGCTGATTCCCCCAAA
Found at i:6291484 original size:102 final size:103
Alignment explanation
Indices: 6291127--6291519 Score: 626
Period size: 103 Copynumber: 3.8 Consensus size: 103
6291117 ATTCCCCCAA
*
6291127 GGGTTGCTAAGTGCTGATTCCCCCAAAGGGTTGCTAAGTGCTGATTCCCCGATTTATTGGTGGTT
1 GGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTTATTGGTGGTT
*
6291192 GCTAAGTGCTGATCCCACCGTATTTTAAATGTGAAAGG
66 GCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAAGG
* * *
6291230 GGGTTGCTAAGTGCTGATTCCTCCAAGGGATTGCTATGTGCTGATTCCCCGATTTATTGGTGGTT
1 GGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTTATTGGTGGTT
6291295 GCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAAGG
66 GCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAAGG
* * *
6291333 GGGTTGCTAAGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCTATTAATTGGTGGTT
1 GGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTTATTGGTGGTT
* * * *
6291398 GCCAAGTGCTGATTCCACCGCATCTGAAATGTG-AAGG
66 GCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAAGG
** *
6291435 GGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTT
1 GGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTTATTGGTGGTT
* *
6291500 GCTAAGTGCGGAATCCACCG
66 GCTAAGTGCTGATTCCACCG
6291520 ATAACGGTTA
Statistics
Matches: 267, Mismatches: 23, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
102 81 0.30
103 186 0.70
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.32
Consensus pattern (103 bp):
GGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTTATTGGTGGTT
GCTAAGTGCTGATTCCACCGTATTTTAAATGTGAAAGG
Found at i:6294253 original size:804 final size:804
Alignment explanation
Indices: 6292705--6295923 Score: 6276
Period size: 804 Copynumber: 4.0 Consensus size: 804
6292695 TCCGATCGGG
*
6292705 AATGCGGGTAAGGGGTGTTACATAGCTGGTGCTAATTTGGTCGAATGAAAGCGTTGATGATTTCT
1 AATGCGGGTAAGGGGTGTTACATTGCTGGTGCTAATTTGGTCGAATGAAAGCGTTGATGATTTCT
6292770 TGTTAGTGTCACGAGCGATAACTCCAAGCTCACGTCCGAATGGATCCTAGATTCAGGATGTTCTT
66 TGTTAGTGTCACGAGCGATAACTCCAAGCTCACGTCCGAATGGATCCTAGATTCAGGATGTTCTT
*
6292835 TCCACATGTGTCCCAATAGAGAACGGTTCTCCACATACAGTTCGGTTGAAGGTGGAGTTGTGCAC
131 TCCACATGTGTCCCAATAGAGAACGGTTCTCCACATACAGTTCGGTTGAAGGTGGAGTTGTGCGC
6292900 ATGAGAAATGATTCATCTTGTAAGGTAATTGGTATTGATACAGTTAAAATTAGGATACACGATGG
196 ATGAGAAATGATTCATCTTGTAAGGTAATTGGTATTGATACAGTTAAAATTAGGATACACGATGG
* *
6292965 GATGATTAAAACACTCTCAGATGTTAGGTATGTACTTGATTTACGAAAGAATCTCATCTTCTTGA
261 GATGATTAAGACACTCTCAGATGTTAGGTATGTACTTGATTTACGAAAGAATCTCATCTCCTTGA
6293030 GTATTTTAGACTTGAAAGGATGCGGAATCAATATCGAGTCGAGCGATATTAAAGTATCTCGTAGA
326 GTATTTTAGACTTGAAAGGATGCGGAATCAATATCGAGTCGAGCGATATTAAAGTATCTCGTAGA
6293095 GCTCTCGTTTTGTTAAAAGGTAACATAACTGGCAATCTTTATATTCTGAAAGGTTCTATAGTGAC
391 GCTCTCGTTTTGTTAAAAGGTAACATAACTGGCAATCTTTATATTCTGAAAGGTTCTATAGTGAC
*
6293160 CGATGAAATTGTACGTCCCTCATCCGTTACGGAGTCGAAATCAACTCGTTTGGAGCGGAGGCTAC
456 CGATGAAATTGGACGTCCCTCATCCGTTACGGAGTCGAAATCAACTCGTTTGGAGCGGAGGCTAC
*
6293225 TTGGTCATAGGAGGGAAAAATGTATGACCGTTTTCGTTGAAGAGGGATTTTCTTTTGGATGCAGG
521 TTGGTCATAGGAGGGAAAAATGTATGACCGTTTTCGTTGAAGAGGGATTCTCTTTTGGATGCAGG
6293290 TTTTGAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGAGTTAGTTTTGATTTAGTAGTGC
586 TTTTGAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGAGTTAGTTTTGATTTAGTAGTGC
6293355 ACAAGTTGAAGGCTAGAAGTCTTCCGACTTCTAAGCACATATTCGACTTAGTTAATTCCCTGCAT
651 ACAAGTTGAAGGCTAGAAGTCTTCCGACTTCTAAGCACATATTCGACTTAGTTAATTCCCTGCAT
6293420 AGTTCAAGATAGGCCCATGGCGGGCTTTGGCAAAGATGGAATTGTAAGAATTCATGTTAAGGTAG
716 AGTTCAAGATAGGCCCATGGCGGGCTTTGGCAAAGATGGAATTGTAAGAATTCATGTTAAGGTAG
6293485 AGATTGTTAGAGTTGTGTGACCCA
781 AGATTGTTAGAGTTGTGTGACCCA
6293509 AATGCGGGTAAGGGGTGTTACATTGCTGGTGCTAATTTGGTCGAATGAAAGCGTTGATGATTTCT
1 AATGCGGGTAAGGGGTGTTACATTGCTGGTGCTAATTTGGTCGAATGAAAGCGTTGATGATTTCT
6293574 TGTTAGTGTCACGAGCGATAACTCCAAGCTCACGTCCGAATGGATCCTAGATTCAGGATGTTCTT
66 TGTTAGTGTCACGAGCGATAACTCCAAGCTCACGTCCGAATGGATCCTAGATTCAGGATGTTCTT
6293639 TCCACATGTGTCCCAATAGAGAACGGTTCTCCACATACAGTTCGGTTGAAGGTGGAGTTGTGCGC
131 TCCACATGTGTCCCAATAGAGAACGGTTCTCCACATACAGTTCGGTTGAAGGTGGAGTTGTGCGC
6293704 ATGAGAAATGATTCATCTTGTAAGGTAATTGGTATTGATACAGTTAAAATTAGGATACACGATGG
196 ATGAGAAATGATTCATCTTGTAAGGTAATTGGTATTGATACAGTTAAAATTAGGATACACGATGG
6293769 GATGATTAAGACACTCTCAGATGTTAGGTATGTACTTGATTTACGAAAGAATCTCATCTCCTTGA
261 GATGATTAAGACACTCTCAGATGTTAGGTATGTACTTGATTTACGAAAGAATCTCATCTCCTTGA
6293834 GTATTTTAGACTTGAAAGGATGCGGAATCAATATCGAGTCGAGCGATATTAAAGTATCTCGTAGA
326 GTATTTTAGACTTGAAAGGATGCGGAATCAATATCGAGTCGAGCGATATTAAAGTATCTCGTAGA
6293899 GCTCTCGTTTTGTTAAAAGGTAACATAACTGGCAATCTTTATATTCTGAAAGGTTCTATAGTGAC
391 GCTCTCGTTTTGTTAAAAGGTAACATAACTGGCAATCTTTATATTCTGAAAGGTTCTATAGTGAC
6293964 CGATGAAATTGGACGTCCCTCATCCGTTACGGAGTCGAAATCAACTCGTTTGGAGCGGAGGCTAC
456 CGATGAAATTGGACGTCCCTCATCCGTTACGGAGTCGAAATCAACTCGTTTGGAGCGGAGGCTAC
* *
6294029 TTGGTCATAGGAGGAAAAAATGTATGACCGTTTTCGTTGAAGAGGGATTTTCTTTTGGATGCAGG
521 TTGGTCATAGGAGGGAAAAATGTATGACCGTTTTCGTTGAAGAGGGATTCTCTTTTGGATGCAGG
6294094 TTTTGAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGAGTTAGTTTTGATTTAGTAGTGC
586 TTTTGAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGAGTTAGTTTTGATTTAGTAGTGC
*
6294159 ACAAGTTGAAGGCTAGAAGTCTTCCGACTTCTAAGCACATATTCGACTTAGTTAACTCCCTGCAT
651 ACAAGTTGAAGGCTAGAAGTCTTCCGACTTCTAAGCACATATTCGACTTAGTTAATTCCCTGCAT
* *
6294224 AGTTCAAGATAGGTCCATGGCGGGCTTTGGCAAAGATGGAATTGTAAGAATTCATGTTAAGGTGG
716 AGTTCAAGATAGGCCCATGGCGGGCTTTGGCAAAGATGGAATTGTAAGAATTCATGTTAAGGTAG
6294289 AGATTGTTAGAGTTGTGTGACCCA
781 AGATTGTTAGAGTTGTGTGACCCA
*
6294313 AATGTGGGTAAGGGGTGTTACATTGCTGGTGCTAATTTGGTCGAATGAAAGCGTTGATGATTTCT
1 AATGCGGGTAAGGGGTGTTACATTGCTGGTGCTAATTTGGTCGAATGAAAGCGTTGATGATTTCT
6294378 TGTTAGTGTCACGAGCGATAACTCCAAGCTCACGTCCGAATGGATCCTAGATTCAGGATGTTCTT
66 TGTTAGTGTCACGAGCGATAACTCCAAGCTCACGTCCGAATGGATCCTAGATTCAGGATGTTCTT
6294443 TCCACATGTGTCCCAATAGAGAACGGTTCTCCACATACAGTTCGGTTGAAGGTGGAGTTGTGCGC
131 TCCACATGTGTCCCAATAGAGAACGGTTCTCCACATACAGTTCGGTTGAAGGTGGAGTTGTGCGC
6294508 ATGAGAAATGATTCATCTTGTAAGGTAATTGGTATTGATACAGTTAAAATTAGGATACACGATGG
196 ATGAGAAATGATTCATCTTGTAAGGTAATTGGTATTGATACAGTTAAAATTAGGATACACGATGG
6294573 GATGATTAAGACACTCTCAGATGTTAGGTATGTACTTGATTTACGAAAGAATCTCATCTCCTTGA
261 GATGATTAAGACACTCTCAGATGTTAGGTATGTACTTGATTTACGAAAGAATCTCATCTCCTTGA
6294638 GTATTTTAGACTTGAAAGGATGCGGAATCAATATCGAGTCGAGCGATATTAAAGTATCTCGTAGA
326 GTATTTTAGACTTGAAAGGATGCGGAATCAATATCGAGTCGAGCGATATTAAAGTATCTCGTAGA
6294703 GCTCTCGTTTTGTTAAAAGGTAACATAACTGGCAATCTTTATATTCTGAAAGGTTCTATAGTGAC
391 GCTCTCGTTTTGTTAAAAGGTAACATAACTGGCAATCTTTATATTCTGAAAGGTTCTATAGTGAC
*
6294768 CGATGAAATTGGACGTCCCTCATCCGTTATGGAGTCGAAATCAACTCGTTTGGAGCGGAGGCTAC
456 CGATGAAATTGGACGTCCCTCATCCGTTACGGAGTCGAAATCAACTCGTTTGGAGCGGAGGCTAC
6294833 TTGGTCATAGGAGGGAAAAATGTATGACCGTTTTCGTTGAAGAGGGATTCTCTTTTGGATGCAGG
521 TTGGTCATAGGAGGGAAAAATGTATGACCGTTTTCGTTGAAGAGGGATTCTCTTTTGGATGCAGG
6294898 TTTTGAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGAGTTAGTTTTGATTTAGTAGTGC
586 TTTTGAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGAGTTAGTTTTGATTTAGTAGTGC
6294963 ACAAGTTGAAGGCTAGAAGTCTTCCGACTTCTAAGCACATATTCGACTTAGTTAATTCCCTGCAT
651 ACAAGTTGAAGGCTAGAAGTCTTCCGACTTCTAAGCACATATTCGACTTAGTTAATTCCCTGCAT
6295028 AGTTCAAGATAGGCCCATGGCGGGCTTTGGCAAAGATGGAATTGTAAGAATTCATGTTAAGGTAG
716 AGTTCAAGATAGGCCCATGGCGGGCTTTGGCAAAGATGGAATTGTAAGAATTCATGTTAAGGTAG
6295093 AGATTGTTAGAGTTGTGTGACCCA
781 AGATTGTTAGAGTTGTGTGACCCA
6295117 AATGCGGGTAAGGGGTGTTACATTGCTGGTGCTAATTTGGTCGAATGAAAGCGTTGATGATTTCT
1 AATGCGGGTAAGGGGTGTTACATTGCTGGTGCTAATTTGGTCGAATGAAAGCGTTGATGATTTCT
6295182 TGTTAGTGTCACGAGCGATAACTCCAAGCTCACGTCCGAATGGATCCTAGATTCAGGATGTTCTT
66 TGTTAGTGTCACGAGCGATAACTCCAAGCTCACGTCCGAATGGATCCTAGATTCAGGATGTTCTT
6295247 TCCACATGTGTCCCAATAGAGAACGGTTCTCCACATACAGTTCGGTTGAAGGTGGAGTTGTGCGC
131 TCCACATGTGTCCCAATAGAGAACGGTTCTCCACATACAGTTCGGTTGAAGGTGGAGTTGTGCGC
6295312 ATGAGAAATGATTCATCTTGTAAGGTAATTGGTATTGATACAGTTAAAATTAGGATACACGATGG
196 ATGAGAAATGATTCATCTTGTAAGGTAATTGGTATTGATACAGTTAAAATTAGGATACACGATGG
6295377 GATGATTAAGACACTCTCAGATGTTAGGTATGTACTTGATTTACGAAAGAATCTCATCTCCTTGA
261 GATGATTAAGACACTCTCAGATGTTAGGTATGTACTTGATTTACGAAAGAATCTCATCTCCTTGA
*
6295442 GTATTTTAGACTTGAAAGGATGCGGAATCACTATCGAGTCGAGCGATATTAAAGTATCTCGTAGA
326 GTATTTTAGACTTGAAAGGATGCGGAATCAATATCGAGTCGAGCGATATTAAAGTATCTCGTAGA
*
6295507 GCTCTCGTTTTGTTAAAAGGTAACATAACTGGCAATCTTTATATTCTGAAAGGTTCTATAGTAAC
391 GCTCTCGTTTTGTTAAAAGGTAACATAACTGGCAATCTTTATATTCTGAAAGGTTCTATAGTGAC
*
6295572 CGATGAAATTGGACGTCCCTCATCCGTTATGGAGTCGAAATCAACTCGTTTGGAGCGGAGGCTAC
456 CGATGAAATTGGACGTCCCTCATCCGTTACGGAGTCGAAATCAACTCGTTTGGAGCGGAGGCTAC
6295637 TTGGTCATAGGAGGGAAAAATGTATGACCGTTTTCGTTGAAGAGGGATTCTCTTTTGGATGCAGG
521 TTGGTCATAGGAGGGAAAAATGTATGACCGTTTTCGTTGAAGAGGGATTCTCTTTTGGATGCAGG
6295702 TTTTGAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGAGTTAGTTTTGATTTAGTAGTGC
586 TTTTGAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGAGTTAGTTTTGATTTAGTAGTGC
6295767 ACAAGTTGAAGGCTAGAAGTCTTCCGACTTCTAAGCACATATTCGACTTAGTTAATTCCCTGCAT
651 ACAAGTTGAAGGCTAGAAGTCTTCCGACTTCTAAGCACATATTCGACTTAGTTAATTCCCTGCAT
* *
6295832 AGTTCAAGATAGGCCCATGGCGGGCTTTGGCAAAGATGGAATTGTAAAAATTCATGTTAAGGTGG
716 AGTTCAAGATAGGCCCATGGCGGGCTTTGGCAAAGATGGAATTGTAAGAATTCATGTTAAGGTAG
6295897 AGATTGTTAGAGTTGTGTGACCCA
781 AGATTGTTAGAGTTGTGTGACCCA
6295921 AAT
1 AAT
6295924 TCTAAGAGAT
Statistics
Matches: 2394, Mismatches: 21, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
804 2394 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (804 bp):
AATGCGGGTAAGGGGTGTTACATTGCTGGTGCTAATTTGGTCGAATGAAAGCGTTGATGATTTCT
TGTTAGTGTCACGAGCGATAACTCCAAGCTCACGTCCGAATGGATCCTAGATTCAGGATGTTCTT
TCCACATGTGTCCCAATAGAGAACGGTTCTCCACATACAGTTCGGTTGAAGGTGGAGTTGTGCGC
ATGAGAAATGATTCATCTTGTAAGGTAATTGGTATTGATACAGTTAAAATTAGGATACACGATGG
GATGATTAAGACACTCTCAGATGTTAGGTATGTACTTGATTTACGAAAGAATCTCATCTCCTTGA
GTATTTTAGACTTGAAAGGATGCGGAATCAATATCGAGTCGAGCGATATTAAAGTATCTCGTAGA
GCTCTCGTTTTGTTAAAAGGTAACATAACTGGCAATCTTTATATTCTGAAAGGTTCTATAGTGAC
CGATGAAATTGGACGTCCCTCATCCGTTACGGAGTCGAAATCAACTCGTTTGGAGCGGAGGCTAC
TTGGTCATAGGAGGGAAAAATGTATGACCGTTTTCGTTGAAGAGGGATTCTCTTTTGGATGCAGG
TTTTGAAAAGTTAGGGCACTGTGTTCGTGAAAATCAGACCCGAGTTAGTTTTGATTTAGTAGTGC
ACAAGTTGAAGGCTAGAAGTCTTCCGACTTCTAAGCACATATTCGACTTAGTTAATTCCCTGCAT
AGTTCAAGATAGGCCCATGGCGGGCTTTGGCAAAGATGGAATTGTAAGAATTCATGTTAAGGTAG
AGATTGTTAGAGTTGTGTGACCCA
Found at i:6303753 original size:23 final size:21
Alignment explanation
Indices: 6303725--6303766 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
6303715 TATTGTTTTG
*
6303725 ATTATTTTAATTATTTCTTAATA
1 ATTATTCTAATT-TTT-TTAATA
6303748 ATTATTCTAATTTTTTTAA
1 ATTATTCTAATTTTTTTAA
6303767 AAATATCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 3 0.17
23 11 0.61
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTATTCTAATTTTTTTAATA
Found at i:6307475 original size:18 final size:18
Alignment explanation
Indices: 6307448--6307491 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
6307438 GACGGACCAG
*
6307448 TTTAAAATATTATGTTAT
1 TTTAAAATATTATGTCAT
*
6307466 TTTAATATATTATGTCAT
1 TTTAAAATATTATGTCAT
6307484 TTATAAAA
1 TT-TAAAA
6307492 CATAAAAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (18 bp):
TTTAAAATATTATGTCAT
Found at i:6307607 original size:25 final size:25
Alignment explanation
Indices: 6307579--6307626 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
6307569 AAAATTTTAA
*
6307579 TAAATAAAAAAATATAATAAAATTT
1 TAAATAAAAAAATAAAATAAAATTT
**
6307604 TAAATATTAAAATAAAATAAAAT
1 TAAATAAAAAAATAAAATAAAAT
6307627 AAATATTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (25 bp):
TAAATAAAAAAATAAAATAAAATTT
Found at i:6307651 original size:30 final size:28
Alignment explanation
Indices: 6307567--6307653 Score: 86
Period size: 30 Copynumber: 3.0 Consensus size: 28
6307557 TTGTTTTTAT
* *
6307567 ATAAAATTTTAATAAA-TAAAAAAATATA
1 ATAAAA-TTTAAAAAATTAAAAAAATAAA
* *
6307595 ATAAAATTTTAAATATTAAAATAAAATAAA
1 ATAAAATTTAAAAAATT-AAA-AAAATAAA
6307625 ATAAATATTTAAAAAAATTAAAAAAATAA
1 ATAAA-ATTT-AAAAAATTAAAAAAATAA
6307654 TATAGATGAG
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
27 6 0.12
28 7 0.15
29 3 0.06
30 19 0.40
31 7 0.15
32 6 0.12
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (28 bp):
ATAAAATTTAAAAAATTAAAAAAATAAA
Found at i:6316508 original size:15 final size:15
Alignment explanation
Indices: 6316488--6316538 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
6316478 TTTATGGAAA
6316488 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
6316503 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
6316517 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
6316533 ATCAAA
1 ATCAAA
6316539 TATTGGCATA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
14 4 0.14
15 20 0.71
16 4 0.14
ACGTcount: A:0.45, C:0.08, G:0.22, T:0.25
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:6316516 original size:30 final size:30
Alignment explanation
Indices: 6316482--6316544 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
6316472 TCCATATTTA
6316482 TGGAAAATCAAAGATATGGGTATCAAATAT
1 TGGAAAATCAAAGATATGGGTATCAAATAT
*
6316512 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAATCAAAGATATGGGTATCAAATAT
6316542 TGG
1 TGG
6316545 CATAATAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.27
Consensus pattern (30 bp):
TGGAAAATCAAAGATATGGGTATCAAATAT
Found at i:6319051 original size:28 final size:29
Alignment explanation
Indices: 6319001--6319063 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
6318991 TCTCTCAACA
* *
6319001 AAAATTACAAAAAAATTTAAAAAACTTTT
1 AAAATTACAAAAAAATTTAAAAAAATTTC
*
6319030 AAAATT-C-AAAATATTTATAAAAAATTTC
1 AAAATTACAAAAAAATTTA-AAAAAATTTC
6319058 AAAATT
1 AAAATT
6319064 TATATTTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 9 0.30
28 15 0.50
29 6 0.20
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.33
Consensus pattern (29 bp):
AAAATTACAAAAAAATTTAAAAAAATTTC
Found at i:6319212 original size:16 final size:16
Alignment explanation
Indices: 6319193--6319223 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6319183 TTGAAAAAGT
6319193 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
6319209 TTTCAAATTTATATG
1 TTTCAAATATATATG
6319224 CTTTTAACCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:6320102 original size:39 final size:40
Alignment explanation
Indices: 6320027--6320106 Score: 94
Period size: 42 Copynumber: 2.0 Consensus size: 40
6320017 TATCATGTGT
*
6320027 TATTATTAATTAGTTTCAAACCATACATTTCAATATTTATAA
1 TATTATTAATTAGTTTCAAACCACACATTT-AATA-TTATAA
*
6320069 TATTA-TATATTATTTTCAAA-CACACATTT-ATATTATAA
1 TATTATTA-ATTAGTTTCAAACCACACATTTAATATTATAA
6320107 ATTCATGATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
38 6 0.17
39 3 0.09
41 10 0.29
42 16 0.46
ACGTcount: A:0.41, C:0.11, G:0.01, T:0.46
Consensus pattern (40 bp):
TATTATTAATTAGTTTCAAACCACACATTTAATATTATAA
Found at i:6325847 original size:18 final size:19
Alignment explanation
Indices: 6325824--6325867 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
6325814 ATTAGAAATT
*
6325824 AATATAAATTG-TTTATAA
1 AATATAAATTGATATATAA
*
6325842 AATATAATTTGAATATATAA
1 AATATAAATTG-ATATATAA
6325862 AATATA
1 AATATA
6325868 TTTCTATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.45
20 12 0.55
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.41
Consensus pattern (19 bp):
AATATAAATTGATATATAA
Found at i:6333041 original size:60 final size:60
Alignment explanation
Indices: 6332948--6333065 Score: 227
Period size: 60 Copynumber: 2.0 Consensus size: 60
6332938 CGATCCCTAA
*
6332948 CAAATTCAAGGACTAAGTATTACCTTAACCTTCGAGAAACACACTATTTATACAAATCTT
1 CAAATTCAAGGACTAAATATTACCTTAACCTTCGAGAAACACACTATTTATACAAATCTT
6333008 CAAATTCAAGGACTAAATATTACCTTAACCTTCGAGAAACACACTATTTATACAAATC
1 CAAATTCAAGGACTAAATATTACCTTAACCTTCGAGAAACACACTATTTATACAAATC
6333066 CCAACTATTG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.29
Consensus pattern (60 bp):
CAAATTCAAGGACTAAATATTACCTTAACCTTCGAGAAACACACTATTTATACAAATCTT
Found at i:6335109 original size:22 final size:20
Alignment explanation
Indices: 6335081--6335128 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
6335071 TCAATTAACC
* *
6335081 ACAAAAAAACGAAGCACACAA
1 ACAAAAAAAC-AAACAAACAA
6335102 TACAAAAAAACAAACAAACAA
1 -ACAAAAAAACAAACAAACAA
6335123 ACAAAA
1 ACAAAA
6335129 GTTGGTTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 6 0.25
21 8 0.33
22 10 0.42
ACGTcount: A:0.73, C:0.21, G:0.04, T:0.02
Consensus pattern (20 bp):
ACAAAAAAACAAACAAACAA
Found at i:6340937 original size:11 final size:10
Alignment explanation
Indices: 6340915--6340961 Score: 53
Period size: 10 Copynumber: 4.6 Consensus size: 10
6340905 TATATTTTTT
6340915 TAAAAAATTA
1 TAAAAAATTA
6340925 TAAAAAATATA
1 TAAAAAAT-TA
6340936 TAAAGAAAGTTA
1 TAAA-AAA-TTA
6340948 -AAAAAATTA
1 TAAAAAATTA
6340957 -AAAAA
1 TAAAAA
6340962 TTTCTAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
9 8 0.24
10 11 0.32
11 9 0.26
12 5 0.15
13 1 0.03
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.23
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:6349389 original size:7 final size:7
Alignment explanation
Indices: 6349344--6349373 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
6349334 AAGGTGATTT
6349344 TTATTAA
1 TTATTAA
6349351 TTATTAA
1 TTATTAA
6349358 TTATTAA
1 TTATTAA
6349365 TTATTAA
1 TTATTAA
6349372 TT
1 TT
6349374 TAAGGATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TTATTAA
Found at i:6353017 original size:26 final size:27
Alignment explanation
Indices: 6352965--6353027 Score: 110
Period size: 26 Copynumber: 2.4 Consensus size: 27
6352955 ATAAAAAATA
6352965 ACCAAAATATTATAAGTTTTTTTATTT
1 ACCAAAATATTATAAGTTTTTTTATTT
*
6352992 ATCAAAATATTATAA-TTTTTTTATTT
1 ACCAAAATATTATAAGTTTTTTTATTT
6353018 ACCAAAATAT
1 ACCAAAATAT
6353028 ACCAAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 20 0.59
27 14 0.41
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (27 bp):
ACCAAAATATTATAAGTTTTTTTATTT
Found at i:6353639 original size:19 final size:19
Alignment explanation
Indices: 6353615--6353676 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 19
6353605 TCTAATTAAG
6353615 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
* * *
6353634 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTAATT
*
6353652 TAATAACTTTATTTTAATT
1 TAATAACTCTATTTTAATT
6353671 TAATAA
1 TAATAA
6353677 ACTATTCTCA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
18 15 0.43
19 20 0.57
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (19 bp):
TAATAACTCTATTTTAATT
Found at i:6353644 original size:18 final size:18
Alignment explanation
Indices: 6353623--6353682 Score: 77
Period size: 18 Copynumber: 3.3 Consensus size: 18
6353613 AGTAATAACT
6353623 CTATTTTAATTTAATAAA
1 CTATTTTAATTTAATAAA
* *
6353641 CTATTCTCATTTAAT-AA
1 CTATTTTAATTTAATAAA
6353658 CTTTATTTTAATTTAATAAA
1 C--TATTTTAATTTAATAAA
6353678 CTATT
1 CTATT
6353683 CTCATCAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
17 3 0.09
18 17 0.49
19 12 0.34
20 3 0.09
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.52
Consensus pattern (18 bp):
CTATTTTAATTTAATAAA
Found at i:6353656 original size:37 final size:37
Alignment explanation
Indices: 6353615--6353687 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
6353605 TCTAATTAAG
6353615 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
*
6353652 TAATAACTTTATTTTAATTTAATAAACTATTCTCAT
1 TAATAACTCTATTTTAATTTAATAAACTATTCTCAT
6353688 CAAATTACCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.49
Consensus pattern (37 bp):
TAATAACTCTATTTTAATTTAATAAACTATTCTCATT
Found at i:6353744 original size:18 final size:17
Alignment explanation
Indices: 6353704--6353748 Score: 58
Period size: 15 Copynumber: 2.7 Consensus size: 17
6353694 ACCAAAATAG
*
6353704 AGTTTATTAAATTAGAT
1 AGTTTATTAAATGAGAT
6353721 --TTTATTAAATGAGAAT
1 AGTTTATTAAATGAG-AT
6353737 AGTTTATTAAAT
1 AGTTTATTAAAT
6353749 TAAAATAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
15 12 0.50
16 2 0.08
18 10 0.42
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (17 bp):
AGTTTATTAAATGAGAT
Found at i:6353755 original size:18 final size:18
Alignment explanation
Indices: 6353704--6353756 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
6353694 ACCAAAATAG
*
6353704 AGTTTATTAAATT-AGAT
1 AGTTTATTAAATTAAAAT
* *
6353721 --TTTATTAAATGAGAAT
1 AGTTTATTAAATTAAAAT
6353737 AGTTTATTAAATTAAAAT
1 AGTTTATTAAATTAAAAT
6353755 AG
1 AG
6353757 AGTTATTACT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
15 10 0.36
16 2 0.07
18 16 0.57
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.43
Consensus pattern (18 bp):
AGTTTATTAAATTAAAAT
Found at i:6354065 original size:26 final size:26
Alignment explanation
Indices: 6354033--6354094 Score: 124
Period size: 26 Copynumber: 2.4 Consensus size: 26
6354023 TTTTTTTGGT
6354033 ATATTTTGATAAATAAAAAAATTATA
1 ATATTTTGATAAATAAAAAAATTATA
6354059 ATATTTTGATAAATAAAAAAATTATA
1 ATATTTTGATAAATAAAAAAATTATA
6354085 ATATTTTGAT
1 ATATTTTGAT
6354095 TATTTTTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (26 bp):
ATATTTTGATAAATAAAAAAATTATA
Found at i:6354738 original size:31 final size:31
Alignment explanation
Indices: 6354686--6354744 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
6354676 CTCTCAATAA
*
6354686 AAAATTACAAAAAAATTTAAAAATAATTTTT
1 AAAATTACAAAAAAATTTAAAAAAAATTTTT
* *
6354717 AAAATT-CAAAATATTTATAAAAAAAATT
1 AAAATTACAAAAAAATT-TAAAAAAAATT
6354745 CTAAAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 8 0.33
31 16 0.67
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (31 bp):
AAAATTACAAAAAAATTTAAAAAAAATTTTT
Found at i:6354756 original size:21 final size:20
Alignment explanation
Indices: 6354732--6354781 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
6354722 TCAAAATATT
*
6354732 TATAAAAAAAATTCTAAAAAA
1 TATAAAAAAAAGT-TAAAAAA
*
6354753 TATATAAAGAAAGTTAAAAAA
1 TATA-AAAAAAAGTTAAAAAA
6354774 T-TAAAAAA
1 TATAAAAAA
6354782 TTTCTAGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 4 0.16
20 2 0.08
21 12 0.48
22 7 0.28
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (20 bp):
TATAAAAAAAAGTTAAAAAA
Found at i:6354758 original size:23 final size:22
Alignment explanation
Indices: 6354717--6354781 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 22
6354707 AATAATTTTT
* *
6354717 AAAATTCAAAATATTTATAAAA
1 AAAATTCAAAAAATATATAAAA
*
6354739 AAAATTCTAAAAAATATATAAAG
1 AAAATTC-AAAAAATATATAAAA
*
6354762 AAAGTT-AAAAAAT-TA-AAAA
1 AAAATTCAAAAAATATATAAAA
6354781 A
1 A
6354782 TTTCTAGAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
19 4 0.11
20 2 0.05
21 7 0.19
22 7 0.19
23 17 0.46
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (22 bp):
AAAATTCAAAAAATATATAAAA
Found at i:6357565 original size:28 final size:30
Alignment explanation
Indices: 6357506--6357574 Score: 88
Period size: 28 Copynumber: 2.3 Consensus size: 30
6357496 AGGTTCATTC
6357506 ATATTATTTTTTTAAAATTTTAAAAATATTT
1 ATATTA-TTTTTTAAAATTTTAAAAATATTT
* *
6357537 ATATTATTTTTTAATA-TTTAATAAT-TTT
1 ATATTATTTTTTAAAATTTTAAAAATATTT
*
6357565 ATATAATTTT
1 ATATTATTTT
6357575 CTATTTATTG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
28 12 0.34
29 8 0.23
30 9 0.26
31 6 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (30 bp):
ATATTATTTTTTAAAATTTTAAAAATATTT
Found at i:6357583 original size:29 final size:27
Alignment explanation
Indices: 6357528--6357600 Score: 67
Period size: 28 Copynumber: 2.6 Consensus size: 27
6357518 TAAAATTTTA
* *
6357528 AAAATATTTATATTATTTTTTAATATTT
1 AAAAT-TTTATATAATTTTCTAATATTT
*
6357556 AATAATTTTATATAATTTTCTATTTATTGT
1 AA-AATTTTATATAATTTTCTA-ATATT-T
6357586 -AAATTTTCATATAAT
1 AAAATTTT-ATATAAT
6357601 CATCTTAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
28 22 0.58
29 15 0.39
30 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (27 bp):
AAAATTTTATATAATTTTCTAATATTT
Found at i:6360036 original size:650 final size:650
Alignment explanation
Indices: 6358795--6360746 Score: 3104
Period size: 650 Copynumber: 3.0 Consensus size: 650
6358785 GTACTTGGAG
6358795 GGTTCATTTTTGTTTAGAAAGTGGGAAACATTCTTTAAAGAAAGTATGAAGCTCTGATGAGTACA
1 GGTTCATTTTTGTTTAGAAAGTGGGAAACATTCTTTAAAGAAAGTATGAAGCTCTGATGAGTACA
6358860 AGTTAGGGAAATTCCGGTAGTGGTCGACATGAGGAGATGTGCCAAAGTTGAAGGACGATACCTTT
66 AGTTAGGGAAATTCCGGTAGTGGTCGACATGAGGAGATGTGCCAAAGTTGAAGGACGATACCTTT
6358925 ATCCCTTTCTTGCTCATCTCCTCGATACAACACTCAACTGACTCATATGGAACGACCTTATCAGC
131 ATCCCTTTCTTGCTCATCTCCTCGATACAACACTCAACTGACTCATATGGAACGACCTTATCAGC
6358990 TGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCCTCCAAAGCTGCATCAACCACCGCTC
196 TGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCCTCCAAAGCTGCATCAACCACCGCTC
6359055 TAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAAGCACAAGATTTGATTGCATTCGGAG
261 TAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAAGCACAAGATTTGATTGCATTCGGAG
6359120 AGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTTATGTGGGAAACAAAATCGGATCATA
326 AGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTTATGTGGGAAACAAAATCGGATCATA
6359185 ATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACGGATTTAAAGAACTTTTCCAGGGAA
391 ATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACGGATTTAAAGAACTTTTCCAGGGAA
6359250 GCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTGTAATGTGGAATCGGTCCCTCCGTT
456 GCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTGTAATGTGGAATCGGTCCCTCCGTT
6359315 TTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAACAGCAAAACCAGCTGCCCAAACCT
521 TTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAACAGCAAAACCAGCTGCCCAAACCT
6359380 GCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACATAAGAAAATGTGCACAAAACAGATA
586 GCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACATAAGAAAATGTGCACAAAACAGATA
6359445 GGTTCATTTTTGTTTAGAAAGTGGGAAACATTCTTTAAAGAAAGTATGAAGCTCTGATGAGTACA
1 GGTTCATTTTTGTTTAGAAAGTGGGAAACATTCTTTAAAGAAAGTATGAAGCTCTGATGAGTACA
6359510 AGTTAGGGAAATTCCGGTAGTGGTCGACATGAGGAGATGTGCCAAAGTTGAAGGACGATACCTTT
66 AGTTAGGGAAATTCCGGTAGTGGTCGACATGAGGAGATGTGCCAAAGTTGAAGGACGATACCTTT
6359575 ATCCCTTTCTTGCTCATCTCCTCGATACAACACTCAACTGACTCATATGGAACGACCTTATCAGC
131 ATCCCTTTCTTGCTCATCTCCTCGATACAACACTCAACTGACTCATATGGAACGACCTTATCAGC
6359640 TGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCCTCCAAAGCTGCATCAACCACCGCTC
196 TGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCCTCCAAAGCTGCATCAACCACCGCTC
6359705 TAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAAGCACAAGATTTGATTGCATTCGGAG
261 TAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAAGCACAAGATTTGATTGCATTCGGAG
6359770 AGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTTATGTGGGAAACAAAATCGGATCATA
326 AGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTTATGTGGGAAACAAAATCGGATCATA
6359835 ATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACGGATTTAAAGAACTTTTCCAGGGAA
391 ATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACGGATTTAAAGAACTTTTCCAGGGAA
6359900 GCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTGTAATGTGGAATCGGTCCCTCCGTT
456 GCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTGTAATGTGGAATCGGTCCCTCCGTT
6359965 TTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAACAGCAAAACCAGCTGCCCAAACCT
521 TTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAACAGCAAAACCAGCTGCCCAAACCT
6360030 GCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACATAAGAAAATGTGCACAAAACAGATA
586 GCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACATAAGAAAATGTGCACAAAACAGAT-
6360095 AAA
650 --A
** * **** * * * ***** * * ** **
6360098 CATGACATCCAAGCTCATAATCAAAGAAA-A--CTTT-AGGAGAGTTTTATGAAAATCAAAAT-A
1 GGT-TCATTTTTGTTTAGAAAGTGGGAAACATTCTTTAAAGAAAG---TATGAAGCTC-TGATGA
* * ** * * ** * ** ** * *
6360158 GTA-TA-TGA-ACAAAGTTAC-TTAGAAGTTGA-AT-TTGA-ACAT-CCAGA-CT-ACA-GA-G-
61 GTACAAGTTAGGGAAA-TTCCGGTAGTGGTCGACATGAGGAGATGTGCCAAAGTTGA-AGGACGA
* * * * * ** * * *
6360210 -A-CTTCATCTGCTTCACAAAT-CAATACATATAATGCGCATTCTAA-AGTCTTTTCTACAG-CT
124 TACCTTTATC-CCTT-TC--TTGC--T-CATCTCCT-CG-ATAC-AACA--C---TCAACTGACT
6360270 CATATGGAACGACCTTATCAGCTGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCCTCC
174 CATATGGAACGACCTTATCAGCTGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCCTCC
6360335 AAAGCTGCATCAACCACCGCTCTAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAAGCA
239 AAAGCTGCATCAACCACCGCTCTAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAAGCA
6360400 CAAGATTTGATTGCATTCGGAGAGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTTATG
304 CAAGATTTGATTGCATTCGGAGAGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTTATG
6360465 TGGGAAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACGGA
369 TGGGAAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACGGA
6360530 TTTAAAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTGTA
434 TTTAAAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTGTA
6360595 ATGTGGAATCGGTCCCTCCGTTTTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAACA
499 ATGTGGAATCGGTCCCTCCGTTTTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAACA
6360660 GCAAAACCAGCTGCCCAAACCTGCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACATAA
564 GCAAAACCAGCTGCCCAAACCTGCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACATAA
6360725 GAAAATGTGCACAAAACAGATA
629 GAAAATGTGCACAAAACAGATA
6360747 AAACATGACA
Statistics
Matches: 1231, Mismatches: 46, Indels: 51
0.93 0.03 0.04
Matches are distributed among these distances:
640 6 0.00
641 4 0.00
642 1 0.00
643 2 0.00
644 4 0.00
645 3 0.00
646 9 0.01
647 4 0.00
648 6 0.00
649 5 0.00
650 665 0.54
651 9 0.01
652 479 0.39
653 20 0.02
654 14 0.01
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (650 bp):
GGTTCATTTTTGTTTAGAAAGTGGGAAACATTCTTTAAAGAAAGTATGAAGCTCTGATGAGTACA
AGTTAGGGAAATTCCGGTAGTGGTCGACATGAGGAGATGTGCCAAAGTTGAAGGACGATACCTTT
ATCCCTTTCTTGCTCATCTCCTCGATACAACACTCAACTGACTCATATGGAACGACCTTATCAGC
TGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCCTCCAAAGCTGCATCAACCACCGCTC
TAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAAGCACAAGATTTGATTGCATTCGGAG
AGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTTATGTGGGAAACAAAATCGGATCATA
ATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACGGATTTAAAGAACTTTTCCAGGGAA
GCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTGTAATGTGGAATCGGTCCCTCCGTT
TTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAACAGCAAAACCAGCTGCCCAAACCT
GCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACATAAGAAAATGTGCACAAAACAGATA
Found at i:6360859 original size:652 final size:652
Alignment explanation
Indices: 6358966--6360921 Score: 3107
Period size: 652 Copynumber: 3.0 Consensus size: 652
6358956 ACTCAACTGA
6358966 CTCATATGGAACGACCTTATCAGCTGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCCT
1 CTCATATGGAACGACCTTATCAGCTGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCCT
6359031 CCAAAGCTGCATCAACCACCGCTCTAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAAG
66 CCAAAGCTGCATCAACCACCGCTCTAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAAG
6359096 CACAAGATTTGATTGCATTCGGAGAGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTTA
131 CACAAGATTTGATTGCATTCGGAGAGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTTA
6359161 TGTGGGAAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACG
196 TGTGGGAAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACG
6359226 GATTTAAAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTG
261 GATTTAAAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTG
6359291 TAATGTGGAATCGGTCCCTCCGTTTTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAA
326 TAATGTGGAATCGGTCCCTCCGTTTTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAA
6359356 CAGCAAAACCAGCTGCCCAAACCTGCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACAT
391 CAGCAAAACCAGCTGCCCAAACCTGCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACAT
** * **** * * * *****
6359421 AAGAAAATGTGCACAAAACAGAT---AGGT-TCATTTTTGTTTAGAAAGTGGGAAACATTCTTTA
456 AAGAAAATGTGCACAAAACAGATAAAACATGACATCCAAGCTCATAATCAAAGAAA-A--CTTT-
* * ** ** * * ** * * ** * *
6359482 AAGAAAG---TATGAAGCTC-TGATGAGTACAAGTTAGGGAAA-TTCCGGTAGTGGTCGACATGA
517 AGGAGAGTTTTATGAAAATCAAAAT-AGTA-TA-TGA-ACAAAGTTAC-TTAGAAGTTGA-AT-T
* ** * * * * * * * **
6359542 GGAGATGTGCCAAAGTTGA-AGGACGATACCTTTATC-CCTT-TC--TTGC--T-CATCTCCT-C
575 TGA-ACAT-CCAGA-CT-ACA-GA-G--A-CTTCATCTGCTTCACAAAT-CAATACATATAATGC
* * *
6359598 G-ATAC-AACA--C---TCAACTG
630 GCATTCTAA-AGTCTTTTCTACAG
6359615 ACTCATATGGAACGACCTTATCAGCTGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCC
1 -CTCATATGGAACGACCTTATCAGCTGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCC
6359680 TCCAAAGCTGCATCAACCACCGCTCTAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAA
65 TCCAAAGCTGCATCAACCACCGCTCTAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAA
6359745 GCACAAGATTTGATTGCATTCGGAGAGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTT
130 GCACAAGATTTGATTGCATTCGGAGAGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTT
6359810 ATGTGGGAAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAAC
195 ATGTGGGAAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAAC
6359875 GGATTTAAAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCT
260 GGATTTAAAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCT
6359940 GTAATGTGGAATCGGTCCCTCCGTTTTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCA
325 GTAATGTGGAATCGGTCCCTCCGTTTTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCA
6360005 ACAGCAAAACCAGCTGCCCAAACCTGCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACA
390 ACAGCAAAACCAGCTGCCCAAACCTGCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACA
6360070 TAAGAAAATGTGCACAAAACAGATAAAACATGACATCCAAGCTCATAATCAAAGAAAACTTTAGG
455 TAAGAAAATGTGCACAAAACAGATAAAACATGACATCCAAGCTCATAATCAAAGAAAACTTTAGG
6360135 AGAGTTTTATGAAAATCAAAATAGTATATGAACAAAGTTACTTAGAAGTTGAATTTGAACATCCA
520 AGAGTTTTATGAAAATCAAAATAGTATATGAACAAAGTTACTTAGAAGTTGAATTTGAACATCCA
6360200 GACTACAGAGACTTCATCTGCTTCACAAATCAATACATATAATGCGCATTCTAAAGTCTTTTCTA
585 GACTACAGAGACTTCATCTGCTTCACAAATCAATACATATAATGCGCATTCTAAAGTCTTTTCTA
6360265 CAG
650 CAG
6360268 CTCATATGGAACGACCTTATCAGCTGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCCT
1 CTCATATGGAACGACCTTATCAGCTGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCCT
6360333 CCAAAGCTGCATCAACCACCGCTCTAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAAG
66 CCAAAGCTGCATCAACCACCGCTCTAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAAG
6360398 CACAAGATTTGATTGCATTCGGAGAGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTTA
131 CACAAGATTTGATTGCATTCGGAGAGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTTA
6360463 TGTGGGAAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACG
196 TGTGGGAAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACG
6360528 GATTTAAAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTG
261 GATTTAAAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTG
6360593 TAATGTGGAATCGGTCCCTCCGTTTTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAA
326 TAATGTGGAATCGGTCCCTCCGTTTTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAA
6360658 CAGCAAAACCAGCTGCCCAAACCTGCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACAT
391 CAGCAAAACCAGCTGCCCAAACCTGCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACAT
6360723 AAGAAAATGTGCACAAAACAGATAAAACATGACATCCAAGCTCATAATCAAAGAAAACTTTAGGA
456 AAGAAAATGTGCACAAAACAGATAAAACATGACATCCAAGCTCATAATCAAAGAAAACTTTAGGA
*
6360788 GAGTTTTATGAAAATCAAAATAGTATATGAACAAAGTTATTTAGAAGTTGAATTTGAACATCCAG
521 GAGTTTTATGAAAATCAAAATAGTATATGAACAAAGTTACTTAGAAGTTGAATTTGAACATCCAG
6360853 ACTACAGAGACTTCATCTGCTTCACAAATCAATACATATAATGCGCATTCTAAAGTCTTTTCTAC
586 ACTACAGAGACTTCATCTGCTTCACAAATCAATACATATAATGCGCATTCTAAAGTCTTTTCTAC
6360918 AG
651 AG
6360920 CT
1 CT
6360922 AACAAAACAA
Statistics
Matches: 1234, Mismatches: 47, Indels: 48
0.93 0.04 0.04
Matches are distributed among these distances:
640 6 0.00
641 4 0.00
642 1 0.00
643 2 0.00
644 4 0.00
645 3 0.00
646 9 0.01
647 4 0.00
648 6 0.00
649 4 0.00
650 494 0.40
651 9 0.01
652 654 0.53
653 20 0.02
654 14 0.01
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (652 bp):
CTCATATGGAACGACCTTATCAGCTGTGCTATAAAGATATAGCTGCGGACAGTGCGGATGGGCCT
CCAAAGCTGCATCAACCACCGCTCTAAACTTTCTGCAGTAGGAAGCACAAGTTGTTTATCACAAG
CACAAGATTTGATTGCATTCGGAGAGAGCAAATAGCATGGCATGTATGTGTTCATTTAACATTTA
TGTGGGAAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACG
GATTTAAAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTG
TAATGTGGAATCGGTCCCTCCGTTTTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAA
CAGCAAAACCAGCTGCCCAAACCTGCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACAT
AAGAAAATGTGCACAAAACAGATAAAACATGACATCCAAGCTCATAATCAAAGAAAACTTTAGGA
GAGTTTTATGAAAATCAAAATAGTATATGAACAAAGTTACTTAGAAGTTGAATTTGAACATCCAG
ACTACAGAGACTTCATCTGCTTCACAAATCAATACATATAATGCGCATTCTAAAGTCTTTTCTAC
AG
Found at i:6361994 original size:792 final size:791
Alignment explanation
Indices: 6360469--6362055 Score: 2951
Period size: 792 Copynumber: 2.0 Consensus size: 791
6360459 TTTATGTGGG
6360469 AAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACGGATTTA
1 AAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACGGATTTA
6360534 AAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTGTAATGT
66 AAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTGTAATGT
6360599 GGAATCGGTCCCTCCGTTTTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAACAGCAA
131 GGAATCGGTCCCTCCGTTTTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAACAGCAA
*
6360664 AACCAGCTGCCCAAACCTGCAAAGGATGAGCCCTTTTCACCTTGTTGGAAAGCATACATAAGAAA
196 AACCAGCTGCCCAAACCTGCAAAGGATGAGCCATTTTCACCTTGTTGGAAAGCATACATAAGAAA
6360729 ATGTGCACAAAACAGATAAAACATGACATCCAAGCTCATAATCAAAGAAAACTTTAGGAGAGTTT
261 ATGTGCACAAAACAGATAAAACATGACATCCAAGCTCATAATCAAAGAAAACTTTAGGAGAGTTT
6360794 TATGAAAATCAAAATAGTATATGAACAAAGTTATTTAGAAGTTGAATTTGAACATCCAGACTACA
326 TATGAAAATCAAAATAG-ATATGAACAAAGTTATTTAGAAGTTGAATTTGAACATCCAGACTACA
6360859 GAGACTTCATCTGCTTCACAAATCAATACATATAATGCGCATTCTAAAGTCTTTTCTACAGCTAA
390 GAGACTTCATCTGCTTCACAAATCAATACATATAATGCGCATTCTAAAGTCTTTTCTACAGCTAA
6360924 CAAAACAAAGCATAACACAAGTATTTCAACTTTGATCATACAATTAGAGTAGTGCTACTGAAGTG
455 CAAAACAAAGCATAACACAAGTATTTCAACTTTGATCATACAATTAGAGTAGTGCTACTGAAGTG
* **
6360989 ATAGAAATTTCCAAATGTTTTGTCCAGAACCTGGACTCGTACTGAATTCTTTTTTATCAAAGGCC
520 ATAGAAATTTCCAAATGTTTTGTCCAGAACCTGGACTCGTACTCAATTCCCTTTTATCAAAGGCC
*
6361054 AAGATTAGTATCTTATTGATTCCACTGTGTCTATTCAAGAGCAGACCTTTAGTGATATAAGCTAA
585 AAGATTAGTATCTTATTGATTCCACTGTGTCTATTCAAGAGCAGACCATTAGTGATATAAGCTAA
*
6361119 AGAACTCTGCTCATAATTTGATATAAAACTTTCATTTCAAAACTCAAAAGCTTACTGTGAACTGA
650 AGAACTCTGCTCATAATTTGATATAAAACATTCATTTCAAAACTCAAAAGCTTACTGTGAACTGA
*
6361184 AATCAATCGTCTAAGAACATTAAGAACATCATAAATAATAACCTTAGGATTTAAAGGGTCAGCTG
715 AATCAATCGTCTAAGAACATTAAAAACATCATAAATAATAACCTTAGGATTTAAAGGGTCAGCTG
6361249 ATCCTGAATCAA
780 ATCCTGAATCAA
6361261 AAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACGGATTTA
1 AAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACGGATTTA
6361326 AAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTGTAATGT
66 AAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTGTAATGT
*
6361391 GGAATCGGTCCCTCCGTTTTCGGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAACAGCAA
131 GGAATCGGTCCCTCCGTTTTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAACAGCAA
* *
6361456 AACCAGCTGCCCAAACCTGCAAAGGATGAGCCATTTTCACCTTGTTGGAAAGTATACATAAGAGA
196 AACCAGCTGCCCAAACCTGCAAAGGATGAGCCATTTTCACCTTGTTGGAAAGCATACATAAGAAA
*
6361521 ATGTGCACAAAACAGATAAAACATGACATCCAAGCTCATAATCAAAGAAAAGTTTAGGAGAGTTT
261 ATGTGCACAAAACAGATAAAACATGACATCCAAGCTCATAATCAAAGAAAACTTTAGGAGAGTTT
*
6361586 TATGAAAAATCAAAATAG-TATGAATAAAGTTATTTAGAAGTTGAATTTGAACATCCAGACTACA
326 TATG-AAAATCAAAATAGATATGAACAAAGTTATTTAGAAGTTGAATTTGAACATCCAGACTACA
6361650 GAGACTTCATCTGCTTCACAAATCAATACATATAATGCGCATTCTAAAGTCTTTTCTACAGCTAA
390 GAGACTTCATCTGCTTCACAAATCAATACATATAATGCGCATTCTAAAGTCTTTTCTACAGCTAA
* *
6361715 TAAAACAAAGCATAACACAAGTATTTCAACTTTGATCATACAATTAGAGTAGTGCTACTGCAGTG
455 CAAAACAAAGCATAACACAAGTATTTCAACTTTGATCATACAATTAGAGTAGTGCTACTGAAGTG
*
6361780 ATTGAAATTTCCAAATGTTTTGTCCAGAACCTGGACTCGTACTCAATTCCCTTTTATCAAAGGCC
520 ATAGAAATTTCCAAATGTTTTGTCCAGAACCTGGACTCGTACTCAATTCCCTTTTATCAAAGGCC
* * *
6361845 AAGATTAGTATCTTATTGCTTCCACTGTGTTCTATTCAAGAGCAGGCCATTCGTGATATAAGCTA
585 AAGATTAGTATCTTATTGATTCCACTGTG-TCTATTCAAGAGCAGACCATTAGTGATATAAGCTA
* *
6361910 AAGAACTCTGTTCATAATTTGATATAAAACATTCATTTCAAAACTCAAAAGCTTGCTGTGAACTG
649 AAGAACTCTGCTCATAATTTGATATAAAACATTCATTTCAAAACTCAAAAGCTTACTGTGAACTG
*
6361975 TAATCAATCGTCTAAGAACATTAAAAACATCATAAATAATAACCTTAGGATTTAAAGGGTCAGCT
714 AAATCAATCGTCTAAGAACATTAAAAACATCATAAATAATAACCTTAGGATTTAAAGGGTCAGCT
6362040 GATCCTGAATCAA
779 GATCCTGAATCAA
6362053 AAA
1 AAA
6362056 TTACTCCTTT
Statistics
Matches: 772, Mismatches: 21, Indels: 4
0.97 0.03 0.01
Matches are distributed among these distances:
791 262 0.34
792 497 0.64
793 13 0.02
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (791 bp):
AAACAAAATCGGATCATAATGGGAAAACCTACCTTTCCACTTCCGGCATATTTAGAACGGATTTA
AAGAACTTTTCCAGGGAAGCTAGCACTACAGCTTCAACCATTTGAGGTTCCGCTTTCTGTAATGT
GGAATCGGTCCCTCCGTTTTCAGATCCATTCTTTGAGTTGAGTTTCTTCAGTATAGCAACAGCAA
AACCAGCTGCCCAAACCTGCAAAGGATGAGCCATTTTCACCTTGTTGGAAAGCATACATAAGAAA
ATGTGCACAAAACAGATAAAACATGACATCCAAGCTCATAATCAAAGAAAACTTTAGGAGAGTTT
TATGAAAATCAAAATAGATATGAACAAAGTTATTTAGAAGTTGAATTTGAACATCCAGACTACAG
AGACTTCATCTGCTTCACAAATCAATACATATAATGCGCATTCTAAAGTCTTTTCTACAGCTAAC
AAAACAAAGCATAACACAAGTATTTCAACTTTGATCATACAATTAGAGTAGTGCTACTGAAGTGA
TAGAAATTTCCAAATGTTTTGTCCAGAACCTGGACTCGTACTCAATTCCCTTTTATCAAAGGCCA
AGATTAGTATCTTATTGATTCCACTGTGTCTATTCAAGAGCAGACCATTAGTGATATAAGCTAAA
GAACTCTGCTCATAATTTGATATAAAACATTCATTTCAAAACTCAAAAGCTTACTGTGAACTGAA
ATCAATCGTCTAAGAACATTAAAAACATCATAAATAATAACCTTAGGATTTAAAGGGTCAGCTGA
TCCTGAATCAA
Found at i:6364216 original size:16 final size:16
Alignment explanation
Indices: 6364195--6364259 Score: 53
Period size: 16 Copynumber: 4.0 Consensus size: 16
6364185 TTTTATTTTT
6364195 TTATGTAATTTATTTG
1 TTATGTAATTTATTTG
* **
6364211 TTATGTGAGTTT-TAGG
1 TTATGT-AATTTATTTG
*
6364227 TTGAT-TAGATTTATTTT
1 TT-ATGTA-ATTTATTTG
6364244 TTATGTAATTTATTTG
1 TTATGTAATTTATTTG
6364260 GCATGTTTTT
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
15 1 0.03
16 24 0.67
17 11 0.31
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (16 bp):
TTATGTAATTTATTTG
Found at i:6367118 original size:27 final size:27
Alignment explanation
Indices: 6367088--6367139 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
6367078 TTGGACTGTT
6367088 TTTA-TTGGACTTTTGATTTTAATTTTA
1 TTTATTTGG-CTTTTGATTTTAATTTTA
* *
6367115 TTTATTTGGCTTTTTATTTTTATTT
1 TTTATTTGGCTTTTGATTTTAATTT
6367140 ACTTGTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.17, C:0.04, G:0.10, T:0.69
Consensus pattern (27 bp):
TTTATTTGGCTTTTGATTTTAATTTTA
Found at i:6368412 original size:14 final size:14
Alignment explanation
Indices: 6368393--6368422 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6368383 TTAGAACAAG
*
6368393 TTTTGTAATATAAA
1 TTTTGTAAAATAAA
6368407 TTTTGTAAAATAAA
1 TTTTGTAAAATAAA
6368421 TT
1 TT
6368423 AAATACATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TTTTGTAAAATAAA
Found at i:6368443 original size:62 final size:62
Alignment explanation
Indices: 6368310--6368532 Score: 253
Period size: 62 Copynumber: 3.7 Consensus size: 62
6368300 AATTAGAGTA
* ** * *
6368310 ATTACAACATTAAAACTTGGAACAAACTTTGTGGTCATAAA---T-T-AGATTAATTACAAT--
1 ATTACAACATTAAAAATTGGAACAAACTTTGTAAT-ATAAATTTTGTAAAATAAATTA-AATAC
* * * **
6368367 ATTACAACACTAAAACTTAGAACAAGTTTTGTAATATAAATTTTGTAAAATAAATTAAATAC
1 ATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTAAAATAAATTAAATAC
* * * *
6368429 ATTACAATATTAAAAATTGGAACAAACATTGTAATATAAATTTTGTTATATAAATTAAATAC
1 ATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTAAAATAAATTAAATAC
6368491 ATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATT
1 ATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATT
6368533 AGGTACATTG
Statistics
Matches: 140, Mismatches: 19, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
56 5 0.04
57 29 0.21
59 1 0.01
60 4 0.03
61 8 0.06
62 93 0.66
ACGTcount: A:0.48, C:0.09, G:0.08, T:0.35
Consensus pattern (62 bp):
ATTACAACATTAAAAATTGGAACAAACTTTGTAATATAAATTTTGTAAAATAAATTAAATAC
Found at i:6369536 original size:24 final size:25
Alignment explanation
Indices: 6369509--6369601 Score: 93
Period size: 24 Copynumber: 3.7 Consensus size: 25
6369499 GATATTTTAG
6369509 TTAATATA-TATTATATTTATT-TA
1 TTAATATATTATTATATTTATTATA
* *
6369532 CTTAATAAATAAGTATTATATTAATTATA
1 -TTAAT--AT-ATTATTATATTTATTATA
*
6369561 TTATTATATTATTATA-TTATTATA
1 TTAATATATTATTATATTTATTATA
*
6369585 TTATTATATTATTATAT
1 TTAATATATTATTATAT
6369602 ATATAAAACA
Statistics
Matches: 59, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
24 28 0.47
25 8 0.14
26 4 0.07
27 1 0.02
28 16 0.27
29 2 0.03
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (25 bp):
TTAATATATTATTATATTTATTATA
Found at i:6369567 original size:3 final size:3
Alignment explanation
Indices: 6369545--6369599 Score: 59
Period size: 3 Copynumber: 20.0 Consensus size: 3
6369535 AATAAATAAG
6369545 TAT TA- TAT TAAT TA- TAT TAT TA- TAT TAT TA- TAT TAT TA- TAT
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6369586 TAT TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT
6369600 ATATATAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
2 12 0.27
3 30 0.67
4 3 0.07
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:6369568 original size:8 final size:8
Alignment explanation
Indices: 6369545--6369601 Score: 105
Period size: 8 Copynumber: 7.0 Consensus size: 8
6369535 AATAAATAAG
6369545 TATTATAT
1 TATTATAT
6369553 TAATTATAT
1 T-ATTATAT
6369562 TATTATAT
1 TATTATAT
6369570 TATTATAT
1 TATTATAT
6369578 TATTATAT
1 TATTATAT
6369586 TATTATAT
1 TATTATAT
6369594 TATTATAT
1 TATTATAT
6369602 ATATAAAACA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
8 40 0.83
9 8 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TATTATAT
Found at i:6370577 original size:25 final size:25
Alignment explanation
Indices: 6370548--6370680 Score: 118
Period size: 25 Copynumber: 5.6 Consensus size: 25
6370538 TTTAGTGCGT
6370548 TATCTGATTATTAGCACATCAGTGC
1 TATCTGATTATTAGCACATCAGTGC
*
6370573 TATCTGATTATTAGCACATTAGTGC
1 TATCTGATTATTAGCACATCAGTGC
* **
6370598 TATCTGATTACTAGCATGTCAGTGC
1 TATCTGATTATTAGCACATCAGTGC
* **
6370623 TCTCTG--T-TTAGCACATTTGTGC
1 TATCTGATTATTAGCACATCAGTGC
* *
6370645 TCTCT-A-TA-TAGCACTTCAGTGC
1 TATCTGATTATTAGCACATCAGTGC
*
6370667 TCTCTG-TTCATTAG
1 TATCTGATT-ATTAG
6370681 TGCATAACAA
Statistics
Matches: 88, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
22 32 0.36
23 2 0.02
24 1 0.01
25 53 0.60
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.40
Consensus pattern (25 bp):
TATCTGATTATTAGCACATCAGTGC
Found at i:6370607 original size:50 final size:48
Alignment explanation
Indices: 6370539--6370680 Score: 148
Period size: 50 Copynumber: 2.9 Consensus size: 48
6370529 TTAGGAAACT
*
6370539 TTAGTGCGTTATCTGATTATTAGCACATCAGTGCTATCTGATTATTAGCACA
1 TTAGTGC--TATCTGATTA-TAGCACATCAGTGCTCTCTG-TTATTAGCACA
**
6370591 TTAGTGCTATCTGATTACTAGCATGTCAGTGCTCTCTG-T-TTAGCACA
1 TTAGTGCTATCTGATTA-TAGCACATCAGTGCTCTCTGTTATTAGCACA
* * *
6370638 TTTGTGCTCTCT-A-TATAGCACTTCAGTGCTCTCTGTTCATTAG
1 TTAGTGCTATCTGATTATAGCACATCAGTGCTCTCTGTT-ATTAG
6370681 TGCATAACAA
Statistics
Matches: 79, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
44 18 0.23
45 3 0.04
46 1 0.01
47 22 0.28
48 1 0.01
50 27 0.34
52 7 0.09
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (48 bp):
TTAGTGCTATCTGATTATAGCACATCAGTGCTCTCTGTTATTAGCACA
Found at i:6372870 original size:9 final size:9
Alignment explanation
Indices: 6372856--6372903 Score: 80
Period size: 9 Copynumber: 5.4 Consensus size: 9
6372846 TTTGGTTAAA
6372856 AATTAACCG
1 AATTAACCG
6372865 AATTAACCG
1 AATTAACCG
6372874 AATTAACCG
1 AATTAACCG
6372883 AATTAACCG
1 AATTAACCG
*
6372892 AACTAACC-
1 AATTAACCG
6372900 AATT
1 AATT
6372904 TAAATCACTG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
8 3 0.08
9 34 0.92
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (9 bp):
AATTAACCG
Found at i:6386638 original size:18 final size:18
Alignment explanation
Indices: 6386611--6386658 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
6386601 TTTTTTCTCC
6386611 AAAACCCTAAAAGTCCTA
1 AAAACCCTAAAAGTCCTA
*
6386629 AAAACTCTAAAAGTCCTA
1 AAAACCCTAAAAGTCCTA
6386647 AAAACCCTAAAA
1 AAAACCCTAAAA
6386659 CCCTAAAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.54, C:0.25, G:0.04, T:0.17
Consensus pattern (18 bp):
AAAACCCTAAAAGTCCTA
Found at i:6386655 original size:9 final size:9
Alignment explanation
Indices: 6386611--6386666 Score: 60
Period size: 9 Copynumber: 6.3 Consensus size: 9
6386601 TTTTTTCTCC
6386611 AAAACCCTA
1 AAAACCCTA
**
6386620 AAAGTCCTA
1 AAAACCCTA
*
6386629 AAAACTCTA
1 AAAACCCTA
**
6386638 AAAGTCCTA
1 AAAACCCTA
6386647 AAAACCCT-
1 AAAACCCTA
6386655 AAAACCCTA
1 AAAACCCTA
6386664 AAA
1 AAA
6386667 CTTAAAATCC
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
8 8 0.22
9 28 0.78
ACGTcount: A:0.54, C:0.27, G:0.04, T:0.16
Consensus pattern (9 bp):
AAAACCCTA
Found at i:6388200 original size:31 final size:30
Alignment explanation
Indices: 6388161--6388222 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 30
6388151 AGATGAGATC
6388161 AAAGCTGTAATGGAGAAAGAGTGTCCTCAT
1 AAAGCTGTAATGGAGAAAGAGTGTCCTCAT
*
6388191 ANAAGCTGTAATGGAGAAAGAGTTTCCTCAT
1 A-AAGCTGTAATGGAGAAAGAGTGTCCTCAT
6388222 A
1 A
6388223 CAGTGTCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 1 0.03
31 29 0.97
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.24
Consensus pattern (30 bp):
AAAGCTGTAATGGAGAAAGAGTGTCCTCAT
Found at i:6390264 original size:48 final size:48
Alignment explanation
Indices: 6390211--6390370 Score: 180
Period size: 48 Copynumber: 3.3 Consensus size: 48
6390201 AACCAAAAAT
* *
6390211 TCAAGACCAACTAGAGGAGGATGAACCCAGGGGAACCAAACAACTGAA
1 TCAAGACCAACTAGAGGAAGATGAACACAGGGGAACCAAACAACTGAA
* *
6390259 CCAAGACCAACTAGAGGAAGATGAATCGA-AGGGG-ACCAAACAACTAAA
1 TCAAGACCAACTAGAGGAAGATGAA-C-ACAGGGGAACCAAACAACTGAA
* * * * * *
6390307 TCAAGATCAACTAGAGCAAGATGAACACAAGGGAAACAAACTACAGAA
1 TCAAGACCAACTAGAGGAAGATGAACACAGGGGAACCAAACAACTGAA
* *
6390355 TCATGACCAACAAGAG
1 TCAAGACCAACTAGAG
6390371 TCGCAGGTGC
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
46 1 0.01
47 5 0.05
48 81 0.87
49 6 0.06
ACGTcount: A:0.47, C:0.21, G:0.22, T:0.09
Consensus pattern (48 bp):
TCAAGACCAACTAGAGGAAGATGAACACAGGGGAACCAAACAACTGAA
Found at i:6390900 original size:5 final size:5
Alignment explanation
Indices: 6390890--6390917 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
6390880 GAAGGTAAAG
6390890 ATTGA ATTGA ATTGA ATTGA ATTGA ATT
1 ATTGA ATTGA ATTGA ATTGA ATTGA ATT
6390918 TAAACCTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (5 bp):
ATTGA
Found at i:6393053 original size:21 final size:21
Alignment explanation
Indices: 6393014--6393053 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6393004 ATGGAAATAT
*
6393014 AATTTATAATTATAGTTTTCA
1 AATTTATAATTATAATTTTCA
6393035 AATTTATTAATT-TAATTTT
1 AATTTA-TAATTATAATTTT
6393054 TTTGGTTGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
AATTTATAATTATAATTTTCA
Found at i:6393585 original size:28 final size:28
Alignment explanation
Indices: 6393541--6393600 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
6393531 ATATTTATAT
*
6393541 TATATTATTTTAATATTTAATAATTTTA
1 TATATTATTTTAATATTGAATAATTTTA
* *
6393569 TATATT-TTTTATTTATTGAATATTTTTA
1 TATATTATTTTA-ATATTGAATAATTTTA
6393597 TATA
1 TATA
6393601 GTCATCTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 5 0.18
28 23 0.82
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (28 bp):
TATATTATTTTAATATTGAATAATTTTA
Found at i:6394152 original size:51 final size:51
Alignment explanation
Indices: 6394096--6394198 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
6394086 CAATGGAAAG
6394096 TAAAAATTCAACAAGTATAATTATTTATTTTTAAAATTTTAAAATTATTTT
1 TAAAAATTCAACAAGTATAATTATTTATTTTTAAAATTTTAAAATTATTTT
6394147 TAAAAATTCAACAAGTATAATTATTTATTTTTAAAATTTTAAAATTATTTT
1 TAAAAATTCAACAAGTATAATTATTTATTTTTAAAATTTTAAAATTATTTT
6394198 T
1 T
6394199 TAGATTTTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.50
Consensus pattern (51 bp):
TAAAAATTCAACAAGTATAATTATTTATTTTTAAAATTTTAAAATTATTTT
Found at i:6394196 original size:24 final size:24
Alignment explanation
Indices: 6394114--6394196 Score: 64
Period size: 24 Copynumber: 3.3 Consensus size: 24
6394104 CAACAAGTAT
6394114 AATTATTTATTTTTAAAATTTTAA
1 AATTATTTATTTTTAAAATTTTAA
* * *
6394138 AATTA--T-TTTTAAAAATTCAACAAGTAT
1 AATTATTTATTTTTAAAATT------TTAA
6394165 AATTATTTATTTTTAAAATTTTAA
1 AATTATTTATTTTTAAAATTTTAA
6394189 AATTATTT
1 AATTATTT
6394197 TTTAGATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 18
0.65 0.09 0.26
Matches are distributed among these distances:
21 10 0.23
22 1 0.02
24 15 0.34
27 7 0.16
29 1 0.02
30 10 0.23
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.53
Consensus pattern (24 bp):
AATTATTTATTTTTAAAATTTTAA
Found at i:6395584 original size:12 final size:12
Alignment explanation
Indices: 6395550--6395584 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
6395540 AAAATTAAGA
6395550 ATATGTATATAG
1 ATATGTATATAG
*
6395562 ATATATATATAG
1 ATATGTATATAG
*
6395574 ATATGTTTATA
1 ATATGTATATA
6395585 AATTATAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (12 bp):
ATATGTATATAG
Found at i:6395607 original size:39 final size:40
Alignment explanation
Indices: 6395564--6395646 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 40
6395554 GTATATAGAT
* *
6395564 ATATATATAGATATGTTTATAAAT-TATAAAATATAAAAA
1 ATATATATAAATATGTATATAAATATATAAAATATAAAAA
** **
6395603 ATATATATAAATATGTATATATGTATATAAGTTATAAAAA
1 ATATATATAAATATGTATATAAATATATAAAATATAAAAA
6395643 ATAT
1 ATAT
6395647 GTACGTATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 20 0.54
40 17 0.46
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (40 bp):
ATATATATAAATATGTATATAAATATATAAAATATAAAAA
Found at i:6395623 original size:12 final size:12
Alignment explanation
Indices: 6395549--6395623 Score: 51
Period size: 12 Copynumber: 6.0 Consensus size: 12
6395539 GAAAATTAAG
*
6395549 AATATGTATATA
1 AATATATATATA
*
6395561 GATATATATATA
1 AATATATATATA
* * *
6395573 GATATGTTTATA
1 AATATATATATA
*
6395585 AATTATAAAATATAA
1 AA-TAT-ATATAT-A
*
6395600 AAAATATATATA
1 AATATATATATA
*
6395612 AATATGTATATA
1 AATATATATATA
6395624 TGTATATAAG
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
12 32 0.67
13 8 0.17
14 5 0.10
15 3 0.06
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (12 bp):
AATATATATATA
Found at i:6395646 original size:22 final size:22
Alignment explanation
Indices: 6395619--6395676 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
6395609 ATAAATATGT
6395619 ATATATGTATATAAGTTATAAAA
1 ATATATGTATATAA-TTATAAAA
6395642 A-ATATGTACGTAT-ATTATAAAA
1 ATATATGTA--TATAATTATAAAA
*
6395664 ATGTATGTATATA
1 ATATATGTATATA
6395677 TATGTATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
21 3 0.10
22 16 0.53
23 8 0.27
24 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.40
Consensus pattern (22 bp):
ATATATGTATATAATTATAAAA
Found at i:6400446 original size:41 final size:40
Alignment explanation
Indices: 6400379--6400491 Score: 190
Period size: 41 Copynumber: 2.8 Consensus size: 40
6400369 GTGTTTTTAG
* *
6400379 TCTGCTCCACTACTACTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
6400419 TCTGCTCCACTAACTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACT-ACTGCTTAGGGAGATAAGACTTGATGCGA
*
6400460 TCTGCTCCACTATTGCTTAGGGAGATAAGACT
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACT
6400492 GTAATCTTCG
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
40 31 0.45
41 38 0.55
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Done.