Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 21 of 153
Found at i:7214669 original size:93 final size:93
Alignment explanation
Indices: 7214509--7214691 Score: 287
Period size: 93 Copynumber: 2.0 Consensus size: 93
7214499 TTACGAAGGA
* *
7214509 AATAATCTCTCAAATCATACCAAGTAATATGGTAAATGAATAGATCTAATAATCTCTCCATCATG
1 AATAATCTCTCAAATCATACCAAGTAATATGGTAAATAAATAGATCTAATAATCTCTCAATCATG
*
7214574 CTAAGTAATCTGGAAAAATAAATAGACGT
66 CTAAGTAATATGG-AAAATAAATAGACGT
* * *
7214603 AATAATCTCTC-AATCATGCTAAGTAATATGGTAAATAAATAGATGTAATAATCTCTCAATCATG
1 AATAATCTCTCAAATCATACCAAGTAATATGGTAAATAAATAGATCTAATAATCTCTCAATCATG
*
7214667 CTAAGTAATATGGTAAATAAATAGA
66 CTAAGTAATATGGAAAATAAATAGA
7214692 TCTATATCCC
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
92 11 0.13
93 60 0.73
94 11 0.13
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (93 bp):
AATAATCTCTCAAATCATACCAAGTAATATGGTAAATAAATAGATCTAATAATCTCTCAATCATG
CTAAGTAATATGGAAAATAAATAGACGT
Found at i:7216952 original size:18 final size:17
Alignment explanation
Indices: 7216929--7216962 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7216919 ATAAAAGATC
7216929 ATTTTAAAATTAAATGAA
1 ATTTT-AAATTAAATGAA
*
7216947 ATTTTAACTTAAATGA
1 ATTTTAAATTAAATGA
7216963 TAAAAATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.41
Consensus pattern (17 bp):
ATTTTAAATTAAATGAA
Found at i:7218740 original size:27 final size:27
Alignment explanation
Indices: 7218698--7218761 Score: 110
Period size: 27 Copynumber: 2.3 Consensus size: 27
7218688 TATTTCGATA
7218698 CATACATTACATACATACATACACGCATG
1 CATACA-T-CATACATACATACACGCATG
7218727 CATACATCATACATACATACACGCATG
1 CATACATCATACATACATACACGCATG
7218754 CATACATC
1 CATACATC
7218762 CAAGAAATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 28 0.80
28 1 0.03
29 6 0.17
ACGTcount: A:0.41, C:0.30, G:0.06, T:0.23
Consensus pattern (27 bp):
CATACATCATACATACATACACGCATG
Found at i:7218756 original size:4 final size:4
Alignment explanation
Indices: 7218695--7218747 Score: 63
Period size: 4 Copynumber: 13.2 Consensus size: 4
7218685 AATTATTTCG
** *
7218695 ATAC ATAC ATTAC ATAC ATAC ATAC ACGC ATGC ATAC AT-C ATAC ATAC
1 ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
7218743 ATAC A
1 ATAC A
7218748 CGCATGCATA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
3 3 0.07
4 36 0.84
5 4 0.09
ACGTcount: A:0.45, C:0.26, G:0.04, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:7231912 original size:23 final size:24
Alignment explanation
Indices: 7231882--7231927 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
7231872 TAAGAAACTA
*
7231882 AAAAAGTATAA-AAATATAAATAC
1 AAAAAGTAAAATAAATATAAATAC
7231905 AAAAAGTAAAATTAAATATAAAT
1 AAAAAGTAAAA-TAAATATAAAT
7231928 TTTAGATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
25 10 0.50
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (24 bp):
AAAAAGTAAAATAAATATAAATAC
Found at i:7234144 original size:16 final size:16
Alignment explanation
Indices: 7234123--7234158 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
7234113 TAACTCAGGA
7234123 GCTGCAGGAGTACATG
1 GCTGCAGGAGTACATG
7234139 GCTGCAGGAGTACATG
1 GCTGCAGGAGTACATG
7234155 GCTG
1 GCTG
7234159 TGATTTCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.19, G:0.39, T:0.19
Consensus pattern (16 bp):
GCTGCAGGAGTACATG
Found at i:7234908 original size:16 final size:17
Alignment explanation
Indices: 7234889--7234920 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7234879 TTATTAAATC
7234889 ATATATTTAA-ATTAAA
1 ATATATTTAATATTAAA
7234905 ATATATTTAATATTAA
1 ATATATTTAATATTAA
7234921 TTATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTAATATTAAA
Found at i:7234999 original size:120 final size:120
Alignment explanation
Indices: 7234875--7235164 Score: 485
Period size: 120 Copynumber: 2.4 Consensus size: 120
7234865 AATTATTTTA
* *
7234875 AATTTTATTAAATCATATATTTAAATTAAAATATATTTAATATTAATTATTTAAAATTT-TATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTTATATTT
* *
7234939 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGACTATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
7234995 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATT-ATTATTTTAATTTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAAT-ATTAATTATTTAAATTTATATTT
7235059 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
7235115 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTAT
7235165 GTTTAAATAT
Statistics
Matches: 159, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
119 7 0.04
120 149 0.94
121 3 0.02
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:7235057 original size:15 final size:14
Alignment explanation
Indices: 7235005--7235060 Score: 55
Period size: 15 Copynumber: 4.1 Consensus size: 14
7234995 AATTTTATTA
7235005 AATTATA-TATTTT
1 AATTATATTATTTT
*
7235018 AATTATAATATATTT
1 AATTATATTAT-TTT
*
7235033 AATAATTATTATTTT
1 AATTA-TATTATTTT
7235048 AATT-TA-TATTTT
1 AATTATATTATTTT
7235060 A
1 A
7235061 CAGTATCATA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
12 7 0.19
13 9 0.24
14 3 0.08
15 13 0.35
16 5 0.14
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
AATTATATTATTTT
Found at i:7235121 original size:61 final size:61
Alignment explanation
Indices: 7234935--7235122 Score: 185
Period size: 61 Copynumber: 3.1 Consensus size: 61
7234925 TTAAAATTTT
*
7234935 ATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGACTATTAATTATTAAGA
1 ATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
* * * * * * *
7234996 ATTTTATTA-AATTATATATT-TTAATT-A-T-AATAT-ATTTAATAATTATT-ATT-TTAATTT
1 ATTTTA-TAGTATCATATATTATGATTTGAGTAAAT-TCATATAAGAA-TATTAATTATTAA--G
7235053 A
61 A
*
7235054 TATTTTACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
1 -ATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
7235116 ATTTTAT
1 ATTTTAT
7235123 TAAATTATAT
Statistics
Matches: 96, Mismatches: 17, Indels: 28
0.68 0.12 0.20
Matches are distributed among these distances:
56 4 0.04
57 12 0.12
58 8 0.08
59 16 0.17
60 8 0.08
61 22 0.23
62 9 0.09
63 13 0.14
64 4 0.04
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.49
Consensus pattern (61 bp):
ATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGA
Found at i:7235144 original size:18 final size:17
Alignment explanation
Indices: 7235116--7235150 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7235106 ATTATTAAGA
*
7235116 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7235133 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7235151 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7235264 original size:147 final size:149
Alignment explanation
Indices: 7235104--7235378 Score: 500
Period size: 147 Copynumber: 1.9 Consensus size: 149
7235094 ATAAGAATAT
*
7235104 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
7235169 AAATATGATTAAATTATTTATTATTGAT-ATTAATAATCTTATTAAAATTTAAATAA-AATAATT
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
7235232 TACCAAAACAAATTTCTGC
131 TACCAAAACAAATTTCTGC
7235251 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
* *
7235316 AAATATGATTAAATTATTTATTTTTGGTAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
7235379 CAATAATCAT
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
147 90 0.74
148 27 0.22
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.47
Consensus pattern (149 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAAATAATCTTATTAAAATTTAAATAACAATAATT
TACCAAAACAAATTTCTGC
Found at i:7235291 original size:18 final size:17
Alignment explanation
Indices: 7235263--7235297 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7235253 ATTATTAAGA
*
7235263 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7235280 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7235298 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7235549 original size:45 final size:44
Alignment explanation
Indices: 7235459--7235551 Score: 123
Period size: 45 Copynumber: 2.1 Consensus size: 44
7235449 TTACACCTCT
* * *
7235459 ATTACATTCAACCAAACACAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACACAGATTTACTATTACACATCTATTCC
** *
7235503 ATTACATTCAACCAAACAGTTGATTTGCTATTACACATCTATTCC
1 ATTACATTCAACCAAACA-CAGATTTACTATTACACATCTATTCC
7235548 ATTA
1 ATTA
7235552 TACCTCTAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 18 0.43
45 24 0.57
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.35
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAGATTTACTATTACACATCTATTCC
Found at i:7235559 original size:16 final size:16
Alignment explanation
Indices: 7235534--7235601 Score: 100
Period size: 16 Copynumber: 4.2 Consensus size: 16
7235524 GATTTGCTAT
* * *
7235534 TACACATCTATTCCAT
1 TACACCTCTAATCCAA
*
7235550 TATACCTCTAATCCAA
1 TACACCTCTAATCCAA
7235566 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7235582 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7235598 TACA
1 TACA
7235602 GCGAACCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.37, C:0.34, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:7240845 original size:61 final size:61
Alignment explanation
Indices: 7240750--7240875 Score: 252
Period size: 61 Copynumber: 2.1 Consensus size: 61
7240740 CTCGACACCA
7240750 ACTTAGTCAAAGAAATTACTAAAATAACCATATTTCAAATAAATTATATCATTATAAGGGT
1 ACTTAGTCAAAGAAATTACTAAAATAACCATATTTCAAATAAATTATATCATTATAAGGGT
7240811 ACTTAGTCAAAGAAATTACTAAAATAACCATATTTCAAATAAATTATATCATTATAAGGGT
1 ACTTAGTCAAAGAAATTACTAAAATAACCATATTTCAAATAAATTATATCATTATAAGGGT
7240872 ACTT
1 ACTT
7240876 TTTGTCTTTC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 65 1.00
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (61 bp):
ACTTAGTCAAAGAAATTACTAAAATAACCATATTTCAAATAAATTATATCATTATAAGGGT
Found at i:7240849 original size:28 final size:28
Alignment explanation
Indices: 7240756--7240856 Score: 87
Period size: 28 Copynumber: 3.4 Consensus size: 28
7240746 ACCAACTTAG
7240756 TCAAAGAAATTACTAAAATAACCATATT
1 TCAAAGAAATTACTAAAATAACCATATT
* * ***
7240784 TCAAATAAATTA-TATCATTATAAGGGTACTT
1 TCAAAGAAATTACTA--A-AATAACCATA-TT
7240815 AGTCAAAGAAATTACTAAAATAACCATATT
1 --TCAAAGAAATTACTAAAATAACCATATT
*
7240845 TCAAATAAATTA
1 TCAAAGAAATTA
7240857 TATCATTATA
Statistics
Matches: 55, Mismatches: 11, Indels: 14
0.69 0.14 0.17
Matches are distributed among these distances:
27 2 0.04
28 22 0.40
29 1 0.02
30 8 0.15
31 8 0.15
32 1 0.02
33 11 0.20
34 2 0.04
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.32
Consensus pattern (28 bp):
TCAAAGAAATTACTAAAATAACCATATT
Found at i:7247619 original size:67 final size:67
Alignment explanation
Indices: 7247511--7247642 Score: 219
Period size: 67 Copynumber: 2.0 Consensus size: 67
7247501 GTTTATATTA
* * *
7247511 CAGGGGATTTAGCCTTGACTAGTAATCTCGCTGTAAGAAATGAGGTTCGCGGGAGTGTGCTCTCT
1 CAGGGGATTTAGCCTGGACTAGTAATCTCGCTGTAAGAAATGAGGTTCGCGAGAATGTGCTCTCT
7247576 TG
66 TG
* *
7247578 CAGGGGATTTAGCCTGGACTGGTAATCTCGCTGTAAGAAATGAGGTTCGCGATAATGTGCTCTCT
1 CAGGGGATTTAGCCTGGACTAGTAATCTCGCTGTAAGAAATGAGGTTCGCGAGAATGTGCTCTCT
7247643 GAATTGAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 60 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (67 bp):
CAGGGGATTTAGCCTGGACTAGTAATCTCGCTGTAAGAAATGAGGTTCGCGAGAATGTGCTCTCT
TG
Found at i:7248527 original size:20 final size:18
Alignment explanation
Indices: 7248490--7248532 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
7248480 TATGATTATT
7248490 TTCAGAATATGAAAAATG
1 TTCAGAATATGAAAAATG
7248508 ATTCAGAATTATTG-AAAATG
1 -TTCAGAA-TA-TGAAAAATG
7248528 TTCAG
1 TTCAG
7248533 TAAACTCTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 12 0.55
20 8 0.36
21 2 0.09
ACGTcount: A:0.44, C:0.07, G:0.16, T:0.33
Consensus pattern (18 bp):
TTCAGAATATGAAAAATG
Found at i:7249385 original size:13 final size:13
Alignment explanation
Indices: 7249367--7249394 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7249357 ATAAAATTGG
7249367 AAAGATGAAAAAT
1 AAAGATGAAAAAT
7249380 AAAGATGAAAAAT
1 AAAGATGAAAAAT
7249393 AA
1 AA
7249395 CAAAATAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAGATGAAAAAT
Found at i:7254284 original size:71 final size:71
Alignment explanation
Indices: 7254151--7254284 Score: 153
Period size: 71 Copynumber: 1.9 Consensus size: 71
7254141 TATGAAATGA
** * * * *****
7254151 TTATTTGTTTCTGACTTTGAGTTTGCTTATGTCTCGGTGCTTATGCTATTGATTTGTTAATTGGG
1 TTATTTGTTTCCAACTTTGAGTTTGCCTATGTCTCGGTGCCTATGCTATCGATGCACCAATTGGG
7254216 ATATGT
66 ATATGT
*
7254222 TTATTTGTTTCCAACTTTGAGTTTGCCTATGTC-CGGGTGCCTATGCTATCGGTGCACCAATTG
1 TTATTTGTTTCCAACTTTGAGTTTGCCTATGTCTC-GGTGCCTATGCTATCGATGCACCAATTG
7254285 ATTTCCCTGT
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
70 1 0.02
71 50 0.98
ACGTcount: A:0.16, C:0.16, G:0.22, T:0.46
Consensus pattern (71 bp):
TTATTTGTTTCCAACTTTGAGTTTGCCTATGTCTCGGTGCCTATGCTATCGATGCACCAATTGGG
ATATGT
Found at i:7255215 original size:21 final size:21
Alignment explanation
Indices: 7255189--7255268 Score: 88
Period size: 21 Copynumber: 3.8 Consensus size: 21
7255179 ATAGCGGTTA
*
7255189 TGGCGGTGGTGGATATGGTGG
1 TGGCGGTGGTGGCTATGGTGG
**
7255210 TGGCGGTGGCAGCTATGGTGG
1 TGGCGGTGGTGGCTATGGTGG
* * *
7255231 GGGCAGTGGTGGCTATGGAGG
1 TGGCGGTGGTGGCTATGGTGG
* *
7255252 TGGTGGTGGGGGCTATG
1 TGGCGGTGGTGGCTATG
7255269 ACAGAAATGA
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.10, C:0.09, G:0.56, T:0.25
Consensus pattern (21 bp):
TGGCGGTGGTGGCTATGGTGG
Found at i:7256459 original size:26 final size:26
Alignment explanation
Indices: 7256417--7256472 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
7256407 TATTTTTGTA
7256417 TAATTTATTATAATTTTAAGAAT-TTT
1 TAATTTATTATAATTTTAA-AATATTT
* *
7256443 TAATTT-TTATGATTTTTTAAATATTT
1 TAATTTATTAT-AATTTTAAAATATTT
7256469 TAAT
1 TAAT
7256473 CAATTTATAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.61
Consensus pattern (26 bp):
TAATTTATTATAATTTTAAAATATTT
Found at i:7259138 original size:12 final size:12
Alignment explanation
Indices: 7259121--7259150 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
7259111 TTTTTGCAAA
7259121 AAAAAAAAAAAG
1 AAAAAAAAAAAG
7259133 AAAAAAAAAAAG
1 AAAAAAAAAAAG
7259145 AAAAAA
1 AAAAAA
7259151 GAAGAAGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAG
Found at i:7265664 original size:74 final size:74
Alignment explanation
Indices: 7265542--7265689 Score: 269
Period size: 74 Copynumber: 2.0 Consensus size: 74
7265532 CATTTAACCC
* *
7265542 TATACAAGGGCATTGAAATATGATCTTCCAATGACTCATAAAATGCATGAAAACTCTTCAAAGAA
1 TATACAAGGGCATTGAAATACGATCTTCCAATGACTCATAAAACGCATGAAAACTCTTCAAAGAA
7265607 GCAAATATA
66 GCAAATATA
7265616 TATACAAGGGCATTGAAATACGATCTTCCAATGACTCATAAAACGCATGAAAACTCTTCAAAGAA
1 TATACAAGGGCATTGAAATACGATCTTCCAATGACTCATAAAACGCATGAAAACTCTTCAAAGAA
*
7265681 GTAAATATA
66 GCAAATATA
7265690 CATGTGTCCA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.25
Consensus pattern (74 bp):
TATACAAGGGCATTGAAATACGATCTTCCAATGACTCATAAAACGCATGAAAACTCTTCAAAGAA
GCAAATATA
Found at i:7270848 original size:14 final size:15
Alignment explanation
Indices: 7270808--7270848 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
7270798 GTATTTTCTA
7270808 ATTTTAAATATAATCT
1 ATTTTAAAT-TAATCT
7270824 ATTTT-AATTAA-CT
1 ATTTTAAATTAATCT
*
7270837 TTTTTAAATTAA
1 ATTTTAAATTAA
7270849 AAATATTCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 6 0.26
14 9 0.39
15 3 0.13
16 5 0.22
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTTAAATTAATCT
Found at i:7272140 original size:56 final size:56
Alignment explanation
Indices: 7272074--7272301 Score: 456
Period size: 56 Copynumber: 4.1 Consensus size: 56
7272064 TAAGATATGA
7272074 TATCAATGGAATTAATTAATATATGATAGTTTCTAACATTTTATAATTTTAACTTG
1 TATCAATGGAATTAATTAATATATGATAGTTTCTAACATTTTATAATTTTAACTTG
7272130 TATCAATGGAATTAATTAATATATGATAGTTTCTAACATTTTATAATTTTAACTTG
1 TATCAATGGAATTAATTAATATATGATAGTTTCTAACATTTTATAATTTTAACTTG
7272186 TATCAATGGAATTAATTAATATATGATAGTTTCTAACATTTTATAATTTTAACTTG
1 TATCAATGGAATTAATTAATATATGATAGTTTCTAACATTTTATAATTTTAACTTG
7272242 TATCAATGGAATTAATTAATATATGATAGTTTCTAACATTTTATAATTTTAACTTG
1 TATCAATGGAATTAATTAATATATGATAGTTTCTAACATTTTATAATTTTAACTTG
7272298 TATC
1 TATC
7272302 CAATTAATCG
Statistics
Matches: 172, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 172 1.00
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.46
Consensus pattern (56 bp):
TATCAATGGAATTAATTAATATATGATAGTTTCTAACATTTTATAATTTTAACTTG
Found at i:7274364 original size:25 final size:25
Alignment explanation
Indices: 7274255--7274413 Score: 174
Period size: 25 Copynumber: 6.6 Consensus size: 25
7274245 TTTGTATGCA
*
7274255 CTAATGAA-CAGAGAGCACTAAAGTG
1 CTAAT-AATCAGAGAGCACTAACGTG
**
7274280 CT-AT-A-CAGAGAGCAC-AGGTGTG
1 CTAATAATCAGAGAGCACTA-ACGTG
*
7274302 CT-A-AA-CAGAGAGCACTGACGTG
1 CTAATAATCAGAGAGCACTAACGTG
*
7274324 CTAA-AATCAGAGAGCACCAACGTG
1 CTAATAATCAGAGAGCACTAACGTG
* *
7274348 CTAGTAGTCAGAGAGCACTAACGTG
1 CTAATAATCAGAGAGCACTAACGTG
7274373 CTAATAATCAGAGAGCACTAACGTG
1 CTAATAATCAGAGAGCACTAACGTG
7274398 CTAATAATCAGAGAGC
1 CTAATAATCAGAGAGC
7274414 GCGCTAAAGT
Statistics
Matches: 116, Mismatches: 12, Indels: 12
0.83 0.09 0.09
Matches are distributed among these distances:
21 1 0.01
22 33 0.28
23 3 0.03
24 20 0.17
25 59 0.51
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.17
Consensus pattern (25 bp):
CTAATAATCAGAGAGCACTAACGTG
Found at i:7275490 original size:16 final size:16
Alignment explanation
Indices: 7275469--7275505 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
7275459 GTTTTATCTA
7275469 TATAATAATATAATAT
1 TATAATAATATAATAT
7275485 TATAATAATATAATAT
1 TATAATAATATAATAT
*
7275501 AATAA
1 TATAA
7275506 CTTACTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TATAATAATATAATAT
Found at i:7275505 original size:8 final size:8
Alignment explanation
Indices: 7275468--7275499 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
7275458 TGTTTTATCT
7275468 ATATAATA
1 ATATAATA
7275476 ATATAATA
1 ATATAATA
*
7275484 TTATAATA
1 ATATAATA
7275492 ATATAATA
1 ATATAATA
7275500 TAATAACTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATATAATA
Found at i:7277187 original size:24 final size:24
Alignment explanation
Indices: 7277137--7277188 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
7277127 TTAGTAGGTC
* **
7277137 AAATAAATTATGCTAATAAATGTT
1 AAATAAATTATACTAATAAATACT
*
7277161 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
7277185 AAAT
1 AAAT
7277189 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:7281651 original size:4 final size:4
Alignment explanation
Indices: 7281644--7281674 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
7281634 TATATATACA
7281644 TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TAT
7281675 AACTTTGAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:7282058 original size:14 final size:14
Alignment explanation
Indices: 7282039--7282066 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7282029 GATGAAGTGA
7282039 CAAATGAATAGTAT
1 CAAATGAATAGTAT
7282053 CAAATGAATAGTAT
1 CAAATGAATAGTAT
7282067 AAAAGAAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (14 bp):
CAAATGAATAGTAT
Found at i:7298581 original size:15 final size:14
Alignment explanation
Indices: 7298558--7298589 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
7298548 AAAAAATCAT
7298558 ATTTTATTA-T-AA
1 ATTTTATTATTAAA
7298570 ATTTTATTATTAAA
1 ATTTTATTATTAAA
7298584 ATTTTA
1 ATTTTA
7298590 ATTAAATTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.50
13 1 0.06
14 8 0.44
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
ATTTTATTATTAAA
Found at i:7298593 original size:15 final size:15
Alignment explanation
Indices: 7298561--7298589 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7298551 AAATCATATT
7298561 TTATTATAAATTTTA
1 TTATTATAAATTTTA
7298576 TTATTA-AAATTTTA
1 TTATTATAAATTTTA
7298590 ATTAAATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATTATAAATTTTA
Found at i:7305345 original size:69 final size:69
Alignment explanation
Indices: 7305261--7305416 Score: 312
Period size: 69 Copynumber: 2.3 Consensus size: 69
7305251 TGAATTATAT
7305261 TTCTAACAATCTTTTATCCATTAAAATGCAAGTCAAAAGAAGAAATGGCAATAAAACCCGGTCTC
1 TTCTAACAATCTTTTATCCATTAAAATGCAAGTCAAAAGAAGAAATGGCAATAAAACCCGGTCTC
7305326 AAAC
66 AAAC
7305330 TTCTAACAATCTTTTATCCATTAAAATGCAAGTCAAAAGAAGAAATGGCAATAAAACCCGGTCTC
1 TTCTAACAATCTTTTATCCATTAAAATGCAAGTCAAAAGAAGAAATGGCAATAAAACCCGGTCTC
7305395 AAAC
66 AAAC
7305399 TTCTAACAATCTTTTATC
1 TTCTAACAATCTTTTATC
7305417 AGGTTGAATT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 87 1.00
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.28
Consensus pattern (69 bp):
TTCTAACAATCTTTTATCCATTAAAATGCAAGTCAAAAGAAGAAATGGCAATAAAACCCGGTCTC
AAAC
Found at i:7305618 original size:18 final size:18
Alignment explanation
Indices: 7305595--7305699 Score: 92
Period size: 18 Copynumber: 5.7 Consensus size: 18
7305585 CATATGAAAT
7305595 ATACATTATTAAAATAAA
1 ATACATTATTAAAATAAA
*
7305613 ATACATTATT--AAT-AT
1 ATACATTATTAAAATAAA
*
7305628 ATACATTA-TGAAATAAA
1 ATACATTATTAAAATAAA
7305645 ATACATTATTAATAGCATATGAAA
1 ATACATTATT-A-A--A-AT-AAA
7305669 TATACATTATTAAAATAAA
1 -ATACATTATTAAAATAAA
*
7305688 ATACGTTATTAA
1 ATACATTATTAA
7305700 TATATACAAC
Statistics
Matches: 72, Mismatches: 4, Indels: 22
0.73 0.04 0.22
Matches are distributed among these distances:
14 1 0.01
15 9 0.12
16 6 0.08
17 9 0.12
18 22 0.31
19 3 0.04
20 3 0.04
21 1 0.01
22 1 0.01
23 3 0.04
24 4 0.06
25 10 0.14
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (18 bp):
ATACATTATTAAAATAAA
Found at i:7305647 original size:32 final size:33
Alignment explanation
Indices: 7305593--7305658 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
7305583 AGCATATGAA
7305593 ATATACATTATTAAAATAAAATACATTATTAAT
1 ATATACATTATTAAAATAAAATACATTATTAAT
*
7305626 ATATACATTA-TGAAATAAAATACATTATTAAT
1 ATATACATTATTAAAATAAAATACATTATTAAT
7305658 A
1 A
7305659 GCATATGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 22 0.69
33 10 0.31
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.38
Consensus pattern (33 bp):
ATATACATTATTAAAATAAAATACATTATTAAT
Found at i:7305666 original size:28 final size:30
Alignment explanation
Indices: 7305592--7305681 Score: 100
Period size: 32 Copynumber: 3.1 Consensus size: 30
7305582 TAGCATATGA
*
7305592 AATATACATTATTAAAATAAAATACATTATT
1 AATATACATTA-TGAAATAAAATACATTATT
7305623 AATATATACATTATGAAATAAAATACATTATT
1 -A-ATATACATTATGAAATAAAATACATTATT
*
7305655 AATA-GCA-TATGAAAT---ATACATTATT
1 AATATACATTATGAAATAAAATACATTATT
7305680 AA
1 AA
7305682 AATAAAATAC
Statistics
Matches: 55, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
25 12 0.22
28 8 0.15
29 2 0.04
30 3 0.05
31 1 0.02
32 19 0.35
33 10 0.18
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (30 bp):
AATATACATTATGAAATAAAATACATTATT
Found at i:7309017 original size:21 final size:19
Alignment explanation
Indices: 7308981--7309027 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
7308971 TTTAAAATAA
*
7308981 AAAAAAGTAATAAAATTCTT
1 AAAAAAGTAATAAAATT-GT
7309001 AAAAAA-TAATAAGAAATTGT
1 AAAAAAGTAAT-A-AAATTGT
7309021 AAAAAAG
1 AAAAAAG
7309028 ATATTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 4 0.17
20 14 0.61
21 5 0.22
ACGTcount: A:0.66, C:0.02, G:0.09, T:0.23
Consensus pattern (19 bp):
AAAAAAGTAATAAAATTGT
Found at i:7309038 original size:21 final size:19
Alignment explanation
Indices: 7308980--7309046 Score: 55
Period size: 21 Copynumber: 3.3 Consensus size: 19
7308970 ATTTAAAATA
7308980 AAAAAAAGTAAT-AAAATTCT
1 AAAAAAA-TAATAAAAATT-T
*
7309000 TAAAAAATAATAAGAAATTGT
1 AAAAAAATAATAA-AAATT-T
*
7309021 AAAAAAGATATTAAAAATATT
1 AAAAAA-ATAATAAAAAT-TT
7309042 AAAAA
1 AAAAA
7309047 TTTATAAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
19 4 0.10
20 7 0.18
21 21 0.54
22 7 0.18
ACGTcount: A:0.67, C:0.01, G:0.06, T:0.25
Consensus pattern (19 bp):
AAAAAAATAATAAAAATTT
Found at i:7309045 original size:20 final size:20
Alignment explanation
Indices: 7309022--7309075 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
7309012 AGAAATTGTA
7309022 AAAAAGATATTAAAAA-TATT
1 AAAAAGATA-TAAAAACTATT
**
7309042 AAAAATTTATAAAAACTATT
1 AAAAAGATATAAAAACTATT
7309062 -AAAAGACTATAAAA
1 AAAAAGA-TATAAAA
7309076 CTTGAATTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.28
Consensus pattern (20 bp):
AAAAAGATATAAAAACTATT
Found at i:7309071 original size:11 final size:9
Alignment explanation
Indices: 7309023--7309065 Score: 50
Period size: 10 Copynumber: 4.4 Consensus size: 9
7309013 GAAATTGTAA
7309023 AAAAGATATT
1 AAAA-ATATT
7309033 AAAAATATT
1 AAAAATATT
*
7309042 AAAAATTTAT
1 AAAAATAT-T
7309052 AAAAACTATT
1 AAAAA-TATT
7309062 AAAA
1 AAAA
7309066 GACTATAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 12 0.41
10 15 0.52
11 2 0.07
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (9 bp):
AAAAATATT
Found at i:7309604 original size:19 final size:19
Alignment explanation
Indices: 7309576--7309636 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
7309566 TGTAAATAAG
* *
7309576 TTTTATTAAATTTTATCTT
1 TTTTAATAAATTTTATATT
7309595 TTTTAATAAATTTTATATT
1 TTTTAATAAATTTTATATT
* **
7309614 TTTTGATGATTTTTTATATT
1 TTTTAAT-AAATTTTATATT
7309634 TTT
1 TTT
7309637 AATTATTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
19 23 0.64
20 13 0.36
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.69
Consensus pattern (19 bp):
TTTTAATAAATTTTATATT
Found at i:7309625 original size:11 final size:9
Alignment explanation
Indices: 7309586--7309650 Score: 58
Period size: 9 Copynumber: 6.8 Consensus size: 9
7309576 TTTTATTAAA
*
7309586 TTTTATCTT
1 TTTTATATT
**
7309595 TTTTAATAAA
1 TTTT-ATATT
7309605 TTTTATATT
1 TTTTATATT
7309614 TTTTGATGATT
1 TTTT-AT-ATT
7309625 TTTTATATT
1 TTTTATATT
*
7309634 TTTAATTATT
1 TTTTA-TATT
7309644 TTTTATA
1 TTTTATA
7309651 AGAAAAAATT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
9 20 0.44
10 18 0.40
11 7 0.16
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.69
Consensus pattern (9 bp):
TTTTATATT
Found at i:7309644 original size:19 final size:20
Alignment explanation
Indices: 7309586--7309650 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 20
7309576 TTTTATTAAA
* **
7309586 TTTTATCTTTTTTAAT-AAA
1 TTTTATATTTTTTAATGATT
*
7309605 TTTTATATTTTTTGATGATT
1 TTTTATATTTTTTAATGATT
*
7309625 TTTTATA-TTTTTAATTATT
1 TTTTATATTTTTTAATGATT
7309644 TTTTATA
1 TTTTATA
7309651 AGAAAAAATT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 31 0.79
20 8 0.21
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.69
Consensus pattern (20 bp):
TTTTATATTTTTTAATGATT
Found at i:7310912 original size:18 final size:18
Alignment explanation
Indices: 7310889--7310923 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7310879 CATATTATAT
7310889 TTTATATT-TTTATAAATA
1 TTTATATTATTTA-AAATA
7310907 TTTATATTATTTAAAAT
1 TTTATATTATTTAAAAT
7310924 TTAAAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTATATTATTTAAAATA
Found at i:7313948 original size:30 final size:31
Alignment explanation
Indices: 7313914--7313979 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 31
7313904 TAAACAGAAT
*
7313914 AAATATAATAATATATT-TGAAGTTAAAATC
1 AAATATAATAATATATTATGAAATTAAAATC
* *
7313944 AAATAT--TTATATATTATGAAATTTAAATC
1 AAATATAATAATATATTATGAAATTAAAATC
7313973 AAA-ATAA
1 AAATATAA
7313980 ATCAGAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
28 10 0.33
29 14 0.47
30 6 0.20
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.38
Consensus pattern (31 bp):
AAATATAATAATATATTATGAAATTAAAATC
Found at i:7315253 original size:14 final size:14
Alignment explanation
Indices: 7315234--7315267 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
7315224 AAAAATGTTG
7315234 AAAAACTTTTACAA
1 AAAAACTTTTACAA
7315248 AAAAACTTTTACAA
1 AAAAACTTTTACAA
*
7315262 ATAAAC
1 AAAAAC
7315268 AAACACAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAAACTTTTACAA
Found at i:7318506 original size:16 final size:16
Alignment explanation
Indices: 7318485--7318516 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7318475 ACATTGGTCC
7318485 TAAGTAGTTTCAAATT
1 TAAGTAGTTTCAAATT
7318501 TAAGTAGTTTCAAATT
1 TAAGTAGTTTCAAATT
7318517 CATTTATTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (16 bp):
TAAGTAGTTTCAAATT
Found at i:7325638 original size:21 final size:21
Alignment explanation
Indices: 7325612--7325676 Score: 85
Period size: 21 Copynumber: 3.1 Consensus size: 21
7325602 CAGCAATGCA
* *
7325612 GTTGATGCGGTGGAGGGAAAG
1 GTTGATGCGCTGGATGGAAAG
* *
7325633 GTTGATGTGCTGGATGGAAAA
1 GTTGATGCGCTGGATGGAAAG
*
7325654 GTCGATGCGCTGGATGGAAAG
1 GTTGATGCGCTGGATGGAAAG
7325675 GT
1 GT
7325677 GGATTACGAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.25, C:0.08, G:0.45, T:0.23
Consensus pattern (21 bp):
GTTGATGCGCTGGATGGAAAG
Found at i:7325803 original size:93 final size:93
Alignment explanation
Indices: 7325658--7325938 Score: 463
Period size: 93 Copynumber: 3.0 Consensus size: 93
7325648 GGAAAAGTCG
7325658 ATGCGCTGGATGGAAAGGTGGATTACGACAGTCAGATAGTTCATGAAAACAAGCCAGAGCAGAAA
1 ATGCGCTGGATGGAAAGGTGGATTACGACAGTCAGATAGTTCATGAAAACAAGCCAGAGCAGAAA
* *
7325723 GATATCTTGAGAGAGGATGTAGATTCCC
66 GATATCTTGAGGGAGGATGTAGATCCCC
** * *
7325751 ATTTGCTGGATGGAAAGGTGGATTACAACAGTCAGATAGTCCATGAAAACAAGCCAGAGCAGAAA
1 ATGCGCTGGATGGAAAGGTGGATTACGACAGTCAGATAGTTCATGAAAACAAGCCAGAGCAGAAA
**
7325816 GATATCTCAAGGGAGGATGTAGATCCCC
66 GATATCTTGAGGGAGGATGTAGATCCCC
* *
7325844 ATGCACTGGATGGAAAGGTGGATTATGACAGTCAGATAGTTCATGAAAACAAGCCAGAGCAGAAA
1 ATGCGCTGGATGGAAAGGTGGATTACGACAGTCAGATAGTTCATGAAAACAAGCCAGAGCAGAAA
*
7325909 GATATCTTGAGGGAAGATGTAGATCCCC
66 GATATCTTGAGGGAGGATGTAGATCCCC
7325937 AT
1 AT
7325939 AGAATTCAAG
Statistics
Matches: 171, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 171 1.00
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (93 bp):
ATGCGCTGGATGGAAAGGTGGATTACGACAGTCAGATAGTTCATGAAAACAAGCCAGAGCAGAAA
GATATCTTGAGGGAGGATGTAGATCCCC
Found at i:7326664 original size:54 final size:54
Alignment explanation
Indices: 7326577--7326688 Score: 170
Period size: 54 Copynumber: 2.1 Consensus size: 54
7326567 GAGCCGTGAT
* *
7326577 TTCAAAGGATGTTTCATCCAAGCAAAAATGTCAGAAGGTTGACGATACAAAGAC
1 TTCAAAGGATGTTTCATCCAAGCAAAAAGGTCAGAAGGTTGACCATACAAAGAC
* * * *
7326631 TTCAAAGGATTTTTCATCCGAGCAAAAAGGTCAGAAGGTTGACCTTACAAAGCC
1 TTCAAAGGATGTTTCATCCAAGCAAAAAGGTCAGAAGGTTGACCATACAAAGAC
7326685 TTCA
1 TTCA
7326689 GGCTCTCCAA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.24
Consensus pattern (54 bp):
TTCAAAGGATGTTTCATCCAAGCAAAAAGGTCAGAAGGTTGACCATACAAAGAC
Found at i:7328215 original size:45 final size:44
Alignment explanation
Indices: 7328166--7328319 Score: 168
Period size: 45 Copynumber: 3.4 Consensus size: 44
7328156 CAATTGACAT
* * *
7328166 CTAGTTCCCTAATTCCTTCTCCGCCTTCACCATCCTCTTCAACAA
1 CTAGTTCCC-AATTCCTCCTCCACCTTCACCACCCTCTTCAACAA
* *
7328211 CTAGTGTCCCACTTCCTCCTCCACCTTCACCACCCTCTTCAGCAA
1 CTAGT-TCCCAATTCCTCCTCCACCTTCACCACCCTCTTCAACAA
*
7328256 CTA-TTGCCCCACA-TCCTCCTCCACCTTCACCACCCTCTTCAACGA
1 CTAGTT--CCCA-ATTCCTCCTCCACCTTCACCACCCTCTTCAACAA
* *
7328301 CTACTGTCCCACTTCCTCC
1 CTAGT-TCCCAATTCCTCC
7328320 AACCTCACCA
Statistics
Matches: 93, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 85 0.91
46 5 0.05
47 1 0.01
ACGTcount: A:0.18, C:0.48, G:0.05, T:0.29
Consensus pattern (44 bp):
CTAGTTCCCAATTCCTCCTCCACCTTCACCACCCTCTTCAACAA
Found at i:7328371 original size:42 final size:42
Alignment explanation
Indices: 7328325--7328457 Score: 110
Period size: 42 Copynumber: 3.2 Consensus size: 42
7328315 CCTCCAACCT
*
7328325 CACCACATTTTTCAACTACTATTGCCTCGTCTCCTCCATCTC
1 CACCACCTTTTTCAACTACTATTGCCTCGTCTCCTCCATCTC
**** * * * * * *
7328367 CACCACCTCCACCAATGTGTAGTACT-CCAC-T-TCCTCCATTTT
1 CACCACCTTTTTCAA---CTACTATTGCCTCGTCTCCTCCATCTC
*
7328409 CACCACCCTTTTCAACTACTATTGCCTCGTCTCCTCCATCTC
1 CACCACCTTTTTCAACTACTATTGCCTCGTCTCCTCCATCTC
7328451 CACCACC
1 CACCACC
7328458 CCCACCAATG
Statistics
Matches: 63, Mismatches: 22, Indels: 12
0.65 0.23 0.12
Matches are distributed among these distances:
39 5 0.08
40 3 0.05
41 1 0.02
42 45 0.71
43 1 0.02
44 3 0.05
45 5 0.08
ACGTcount: A:0.20, C:0.44, G:0.05, T:0.32
Consensus pattern (42 bp):
CACCACCTTTTTCAACTACTATTGCCTCGTCTCCTCCATCTC
Found at i:7328400 original size:84 final size:84
Alignment explanation
Indices: 7328309--7328590 Score: 356
Period size: 84 Copynumber: 3.4 Consensus size: 84
7328299 GACTACTGTC
*
7328309 CCACTTCCTCCAACC-TCACCACATTTTTCAACTACTATTGCCTCGTCTCCTCCATCTCCACCAC
1 CCACTTCCTCC-ACCTTCACCACCTTTTTCAACTACTATTGCCTCGTCTCCTCCATCTCCACCAC
7328373 CTCCACCAATGTGTAGTACT
65 CTCCACCAATGTGTAGTACT
** *
7328393 CCACTTCCTCCATTTTCACCACCCTTTTCAACTACTATTGCCTCGTCTCCTCCATCTCCACCACC
1 CCACTTCCTCCACCTTCACCACCTTTTTCAACTACTATTGCCTCGTCTCCTCCATCTCCACCACC
*
7328458 CCCACCAATGTGTAGTACT
66 TCCACCAATGTGTAGTACT
* * * * *
7328477 CCACTTCCTCCACCTTCACCACCCTCTTT-GACTAATATTGTCC-CATCTCCTCCAGCTCCA-CA
1 CCACTTCCTCCACCTTCACCA-CCTTTTTCAACTACTATTG-CCTCGTCTCCTCCATCTCCACCA
* * * *
7328539 ACTCCCATCAATGTCTAGTGCT
64 CCT-CCACCAATGTGTAGTACT
* *
7328561 TCACTTCCTCCACCTTCACCACCTTCTTCA
1 CCACTTCCTCCACCTTCACCACCTTTTTCA
7328591 GTTACTAGTG
Statistics
Matches: 171, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
83 9 0.05
84 155 0.91
85 7 0.04
ACGTcount: A:0.20, C:0.44, G:0.06, T:0.30
Consensus pattern (84 bp):
CCACTTCCTCCACCTTCACCACCTTTTTCAACTACTATTGCCTCGTCTCCTCCATCTCCACCACC
TCCACCAATGTGTAGTACT
Found at i:7328486 original size:42 final size:42
Alignment explanation
Indices: 7328356--7328500 Score: 125
Period size: 42 Copynumber: 3.5 Consensus size: 42
7328346 TTGCCTCGTC
*
7328356 TCCTCCATCTCCACCACCTCCACCAATGTGTAGTACTCCACT
1 TCCTCCATCTCCACCACCCCCACCAATGTGTAGTACTCCACT
* * **** * * * *
7328398 TCCTCCATTTTCACCACCCTTTTCAA---CTACTATTGCCTCGT
1 TCCTCCATCTCCACCACCCCCACCAATGTGTAGTACT-CCAC-T
7328439 CTCCTCCATCTCCACCACCCCCACCAATGTGTAGTACTCCACT
1 -TCCTCCATCTCCACCACCCCCACCAATGTGTAGTACTCCACT
* *
7328482 TCCTCCACCTTCACCACCC
1 TCCTCCATCTCCACCACCC
7328501 TCTTTGACTA
Statistics
Matches: 74, Mismatches: 23, Indels: 12
0.68 0.21 0.11
Matches are distributed among these distances:
39 5 0.07
40 3 0.04
41 1 0.01
42 56 0.76
43 1 0.01
44 3 0.04
45 5 0.07
ACGTcount: A:0.19, C:0.47, G:0.06, T:0.28
Consensus pattern (42 bp):
TCCTCCATCTCCACCACCCCCACCAATGTGTAGTACTCCACT
Found at i:7329083 original size:42 final size:42
Alignment explanation
Indices: 7329037--7329168 Score: 164
Period size: 42 Copynumber: 3.2 Consensus size: 42
7329027 CTAGTGCCCT
* *
7329037 ACCTCCTCCATCTCCACCACCCTCGTCAATATCTAGCACCCC
1 ACCTCCTCCATCTCCACCACCCACATCAATATCTAGCACCCC
* * * *
7329079 ACCTCCTCC-T-T-CACCAACCACTTCGATGA-CTAGTACCCC
1 ACCTCCTCCATCTCCACCACCCACATCAAT-ATCTAGCACCCC
*
7329118 ACCTCCTCCATCTCCACCACCCCCATCAATATCTAGCACCCC
1 ACCTCCTCCATCTCCACCACCCACATCAATATCTAGCACCCC
7329160 ACCTCCTCC
1 ACCTCCTCC
7329169 CTCATCGATG
Statistics
Matches: 75, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
39 30 0.40
40 3 0.04
41 3 0.04
42 39 0.52
ACGTcount: A:0.22, C:0.52, G:0.05, T:0.21
Consensus pattern (42 bp):
ACCTCCTCCATCTCCACCACCCACATCAATATCTAGCACCCC
Found at i:7329111 original size:81 final size:81
Alignment explanation
Indices: 7329003--7329168 Score: 269
Period size: 81 Copynumber: 2.0 Consensus size: 81
7328993 ATTCCTCGTT
* * * * *
7329003 CTCCTTCACCAACCACTTTGACAACTAGTGCCCTACCTCCTCCATCTCCACCACCCTCGTCAATA
1 CTCCTTCACCAACCACTTCGACAACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATA
7329068 TCTAGCACCCCACCTC
66 TCTAGCACCCCACCTC
**
7329084 CTCCTTCACCAACCACTTCGATGACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATA
1 CTCCTTCACCAACCACTTCGACAACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATA
7329149 TCTAGCACCCCACCTC
66 TCTAGCACCCCACCTC
7329165 CTCC
1 CTCC
7329169 CTCATCGATG
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.22, C:0.50, G:0.05, T:0.22
Consensus pattern (81 bp):
CTCCTTCACCAACCACTTCGACAACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATCAATA
TCTAGCACCCCACCTC
Found at i:7329117 original size:39 final size:38
Alignment explanation
Indices: 7329003--7329168 Score: 116
Period size: 42 Copynumber: 4.1 Consensus size: 38
7328993 ATTCCTCGTT
* * * *
7329003 CTCCTTCACCAACCACTTTGACAACTAGTGCCCTACCTC
1 CTCCTTCACCAACCACTTCGA-TACTAGTACCCCACCTC
* * * * *
7329042 CTCCATCTCCACCACCCTCGTCAATATCTAGCACCCCACCTC
1 CTCC-T-T-CACCAACCACTTCGATA-CTAGTACCCCACCTC
7329084 CTCCTTCACCAACCACTTCGATGACTAGTACCCCACCTC
1 CTCCTTCACCAACCACTTCGAT-ACTAGTACCCCACCTC
* * * * *
7329123 CTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCTC
1 CTCC-T-T-CACCAACCACTTCGATA-CTAGTACCCCACCTC
7329165 CTCC
1 CTCC
7329169 CTCATCGATG
Statistics
Matches: 99, Mismatches: 19, Indels: 15
0.74 0.14 0.11
Matches are distributed among these distances:
39 34 0.34
40 4 0.04
41 5 0.05
42 56 0.57
ACGTcount: A:0.22, C:0.50, G:0.05, T:0.22
Consensus pattern (38 bp):
CTCCTTCACCAACCACTTCGATACTAGTACCCCACCTC
Found at i:7329230 original size:198 final size:198
Alignment explanation
Indices: 7328666--7329451 Score: 830
Period size: 198 Copynumber: 3.9 Consensus size: 198
7328656 CTCGTTTCCT
* * * * *
7328666 CCTCCACCTTCACCACCCTCTTTGACAACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATC
1 CCTCCTCCTTCACCAACCACTTCGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATC
* * * * * * * * * *
7328731 AATATCTAACACCCCACTTCCTCCCCCGTCGGTATCTAGTGCTCCACTTCCTCTTTCACCTTCGC
66 AATATCTAACACCCAACCTCCTCCCTCATCGATGTCTAGTGCTTCAATTCCTCCTTCACCTTCAC
* **
7328796 CAACCACTTTGATGACTAGTGCCCCACCTCCTTCACCTTCACTACCATCTCCACCTCCCACATTG
131 CAACCACTTTGATGACTAGTG------C-CC-T-ACC-TC-CT-CCATCTCCACCACCCACATCA
* *
7328861 ATGTCTACTGC-CCCACTT
184 ATATCTA--GCACCC-C-A
* * * * * *** * *
7328879 CCTCCTCCATCTTCACCACCCTCTGCAACGACTAGTGCCCCACCTCTTTTGTCTCCATCACCCCT
1 CCTCCT-C--CTTCACCAACCACTTCGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCC
* * * * *
7328944 ATCAATATCTAGCATCCAACCTCTTCCCTCATCGATGTCTAGTGCTTCAATTCCTCGTTCTCCTT
63 ATCAATATCTAACACCCAACCTCCTCCCTCATCGATGTCTAGTGCTTCAATTCCTCCTTCACCTT
** * *
7329009 CACCAACCACTTTGACAACTAGTGCCCTACCTCCTCCATCTCCACCACCCTCGTCAATATCTAGC
128 CACCAACCACTTTGATGACTAGTGCCCTACCTCCTCCATCTCCACCACCCACATCAATATCTAGC
7329074 ACCCCA
193 ACCCCA
* *
7329080 CCTCCTCCTTCACCAACCACTTCGATGACTAGTACCCCACCTCCTCCATCTCCACCACCCCCATC
1 CCTCCTCCTTCACCAACCACTTCGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATC
* *
7329145 AATATCTAGCACCCCACCTCCTCCCTCATCGATGTCTAGTGCTTCAATTCCTCCTTCACCTTCAC
66 AATATCTAACACCCAACCTCCTCCCTCATCGATGTCTAGTGCTTCAATTCCTCCTTCACCTTCAC
** *
7329210 CAAATACTTTGATGACTAGTGCCCTA-CTCCCTCCATCTCCACCACCCCCATCAATATCTAGCAC
131 CAACCACTTTGATGACTAGTGCCCTACCT-CCTCCATCTCCACCACCCACATCAATATCTAGCAC
7329274 CCCA
195 CCCA
* *
7329278 CCTCCTCCTTCACCAACCACTTTGACGACTAGTGCCCCACCTCCTCCATCTCCACCGCCCCCATC
1 CCTCCTCCTTCACCAACCACTTCGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATC
* * *
7329343 AACATCTAACACCCAACCTCCTTCCC-CATCGATGTCTAGTGCTTCACTTCCTCCTTCACCTTTA
66 AATATCTAACACCCAACCTCC-TCCCTCATCGATGTCTAGTGCTTCAATTCCTCCTTCACCTTCA
* * * *
7329407 TCAACCACTTT-TTCAACTAGTG-CCT--CACCTCCATCTCCACCACCC
130 CCAACCACTTTGAT-GACTAGTGCCCTACCTCCTCCATCTCCACCACCC
7329452 CAATTGGTGT
Statistics
Matches: 494, Mismatches: 72, Indels: 32
0.83 0.12 0.05
Matches are distributed among these distances:
195 18 0.04
196 1 0.00
197 6 0.01
198 295 0.60
199 4 0.01
200 1 0.00
201 6 0.01
202 3 0.01
203 3 0.01
204 22 0.04
205 2 0.00
206 2 0.00
207 3 0.01
208 1 0.00
209 2 0.00
210 1 0.00
213 5 0.01
214 1 0.00
216 118 0.24
ACGTcount: A:0.20, C:0.46, G:0.07, T:0.27
Consensus pattern (198 bp):
CCTCCTCCTTCACCAACCACTTCGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATC
AATATCTAACACCCAACCTCCTCCCTCATCGATGTCTAGTGCTTCAATTCCTCCTTCACCTTCAC
CAACCACTTTGATGACTAGTGCCCTACCTCCTCCATCTCCACCACCCACATCAATATCTAGCACC
CCA
Found at i:7329285 original size:42 final size:42
Alignment explanation
Indices: 7329239--7329364 Score: 116
Period size: 42 Copynumber: 3.1 Consensus size: 42
7329229 TGCCCTACTC
*
7329239 CCTCCATCTCCACCACCCCCATCAATATCTAGCACCCCACCT
1 CCTCCATCTCCACCACCCCCATCAACATCTAGCACCCCACCT
* * * ** **
7329281 CCTCC-T-T-CACCAACCACTTTGACGA-CTAGTGCCCCACCT
1 CCTCCATCTCCACCACCCCCATCAAC-ATCTAGCACCCCACCT
* * *
7329320 CCTCCATCTCCACCGCCCCCATCAACATCTAACACCCAACCT
1 CCTCCATCTCCACCACCCCCATCAACATCTAGCACCCCACCT
7329362 CCT
1 CCT
7329365 TCCCCATCGA
Statistics
Matches: 61, Mismatches: 18, Indels: 10
0.69 0.20 0.11
Matches are distributed among these distances:
39 27 0.44
40 3 0.05
41 3 0.05
42 28 0.46
ACGTcount: A:0.23, C:0.52, G:0.05, T:0.20
Consensus pattern (42 bp):
CCTCCATCTCCACCACCCCCATCAACATCTAGCACCCCACCT
Found at i:7329302 original size:81 final size:81
Alignment explanation
Indices: 7329203--7329364 Score: 236
Period size: 81 Copynumber: 2.0 Consensus size: 81
7329193 TCCTCCTTCA
* * * *
7329203 CCTTCACCAAATACTTTGATGACTAGTGCCCTA-CTCCCTCCATCTCCACCACCCCCATCAATAT
1 CCTTCACCAAACACTTTGACGACTAGTGCCCCACCT-CCTCCATCTCCACCACCCCCATCAACAT
* *
7329267 CTAGCACCCCACCTCCT
65 CTAACACCCAACCTCCT
* *
7329284 CCTTCACCAACCACTTTGACGACTAGTGCCCCACCTCCTCCATCTCCACCGCCCCCATCAACATC
1 CCTTCACCAAACACTTTGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATCAACATC
7329349 TAACACCCAACCTCCT
66 TAACACCCAACCTCCT
7329365 TCCCCATCGA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 70 0.97
82 2 0.03
ACGTcount: A:0.23, C:0.48, G:0.06, T:0.22
Consensus pattern (81 bp):
CCTTCACCAAACACTTTGACGACTAGTGCCCCACCTCCTCCATCTCCACCACCCCCATCAACATC
TAACACCCAACCTCCT
Found at i:7329821 original size:33 final size:33
Alignment explanation
Indices: 7329737--7329821 Score: 80
Period size: 33 Copynumber: 2.6 Consensus size: 33
7329727 TGGGGTACCG
* * * * *
7329737 CCACCTCCACCGCCGCCTTTTGGAGTTGAATCA
1 CCACCGCCACCACCACCTCTTGGAGTTGAACCA
** * *
7329770 CCACTTCCAGCACCACCTCTTGGAGTTGGACCA
1 CCACCGCCACCACCACCTCTTGGAGTTGAACCA
*
7329803 CCACCGCCACCACTACCTC
1 CCACCGCCACCACCACCTC
7329822 CAGGGGGAGG
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.20, C:0.45, G:0.15, T:0.20
Consensus pattern (33 bp):
CCACCGCCACCACCACCTCTTGGAGTTGAACCA
Found at i:7329955 original size:36 final size:33
Alignment explanation
Indices: 7329780--7329933 Score: 218
Period size: 33 Copynumber: 4.7 Consensus size: 33
7329770 CCACTTCCAG
* ** * * *
7329780 CACCACCTCTTGGAGTTGGACCACCACCGCCAC
1 CACCACCTCCTGGAGGAGGAGCACCACCTCCGC
* * *
7329813 CACTACCTCCAGGGGGAGGAGCACCACCTCCGC
1 CACCACCTCCTGGAGGAGGAGCACCACCTCCGC
7329846 CACCACCTCCTGGAGGAGGAGCACCACCTCCGC
1 CACCACCTCCTGGAGGAGGAGCACCACCTCCGC
*
7329879 CACCACCTCCTGGTGGAGGAGCACCACCTCCGC
1 CACCACCTCCTGGAGGAGGAGCACCACCTCCGC
7329912 CACCACCTCCTGGAGGAGGAGC
1 CACCACCTCCTGGAGGAGGAGC
7329934 TCCTGGCCCT
Statistics
Matches: 107, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 107 1.00
ACGTcount: A:0.21, C:0.44, G:0.25, T:0.11
Consensus pattern (33 bp):
CACCACCTCCTGGAGGAGGAGCACCACCTCCGC
Found at i:7330294 original size:1 final size:1
Alignment explanation
Indices: 7330288--7330313 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
7330278 ATTAATTTCC
7330288 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
7330314 GCTTACCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:7334046 original size:6 final size:6
Alignment explanation
Indices: 7334035--7334066 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
7334025 TTGTTTTGCA
7334035 TTTTCT TTTTC- TTTTC- TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
7334067 TGCCAGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTCT
Found at i:7334054 original size:16 final size:16
Alignment explanation
Indices: 7334035--7334065 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7334025 TTGTTTTGCA
7334035 TTTTCTTTTTCTTTTC
1 TTTTCTTTTTCTTTTC
7334051 TTTTCTTTTTCTTTT
1 TTTTCTTTTTCTTTT
7334066 TTGCCAGAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTCTTTTTCTTTTC
Found at i:7340554 original size:22 final size:22
Alignment explanation
Indices: 7340512--7340554 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7340502 TTTGCTTTCA
* *
7340512 AGAAAATAAAGAATAATAACTC
1 AGAAAATAAAGAAGAAAAACTC
7340534 AGAAAA-AAAGAAAGAAAAACT
1 AGAAAATAAAG-AAGAAAAACT
7340555 TAAATGCCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.70, C:0.07, G:0.12, T:0.12
Consensus pattern (22 bp):
AGAAAATAAAGAAGAAAAACTC
Found at i:7345222 original size:13 final size:13
Alignment explanation
Indices: 7345204--7345228 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7345194 CTATAAAAAG
7345204 TTTTCATTTTAGA
1 TTTTCATTTTAGA
7345217 TTTTCATTTTAG
1 TTTTCATTTTAG
7345229 GCACCTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.08, T:0.64
Consensus pattern (13 bp):
TTTTCATTTTAGA
Found at i:7352212 original size:25 final size:23
Alignment explanation
Indices: 7352184--7352232 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
7352174 CAATAAAAAA
7352184 TATTTAAACAATAAAAATGAATATT
1 TATTTAAA-AAT-AAAATGAATATT
* *
7352209 TATTTAAATATAAAATTAATATT
1 TATTTAAAAATAAAATGAATATT
7352232 T
1 T
7352233 TAATTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 12 0.55
24 2 0.09
25 8 0.36
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
TATTTAAAAATAAAATGAATATT
Found at i:7363812 original size:15 final size:17
Alignment explanation
Indices: 7363792--7363826 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
7363782 CGAAAATATA
7363792 TTAAATAT-ATA-TTTT
1 TTAAATATAATAGTTTT
7363807 TTAAATATAATAGTTTT
1 TTAAATATAATAGTTTT
7363824 TTA
1 TTA
7363827 TTTAAGTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.44
16 3 0.17
17 7 0.39
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
TTAAATATAATAGTTTT
Found at i:7364046 original size:23 final size:23
Alignment explanation
Indices: 7364016--7364062 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
7364006 CTTATTGGCT
*
7364016 AGGAAATATCAAAATAGAAATAG
1 AGGAAATATCAAAATAAAAATAG
7364039 AGGAAATATCAAAATAAAAATAG
1 AGGAAATATCAAAATAAAAATAG
7364062 A
1 A
7364063 AATGGAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.64, C:0.04, G:0.15, T:0.17
Consensus pattern (23 bp):
AGGAAATATCAAAATAAAAATAG
Found at i:7364392 original size:68 final size:67
Alignment explanation
Indices: 7364212--7364422 Score: 318
Period size: 68 Copynumber: 3.1 Consensus size: 67
7364202 ATCAAGTTTG
* * * **
7364212 TTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAAAATAAT-AATAAAAAATCAAG
1 TTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATAC-AATTAATCAATTAATAAT-TTG
* *
7364276 TTTA
64 ATAA
7364280 TTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATTCAATTAATAATTTGA
1 TTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAA-TCAATTAATAATTTGA
7364345 TAA
65 TAA
7364348 TTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAA-CAATTAATAATTTGAT
1 TTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATCAATTAATAATTTGAT
7364412 AA
66 AA
7364414 TTTTACTAA
1 TTTTACTAA
7364423 CAATTAATTT
Statistics
Matches: 134, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
66 27 0.20
67 5 0.04
68 94 0.70
69 8 0.06
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.41
Consensus pattern (67 bp):
TTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATCAATTAATAATTTGAT
AA
Found at i:7364432 original size:16 final size:16
Alignment explanation
Indices: 7364411--7364452 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
7364401 AATAATTTGA
*
7364411 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
7364427 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
7364443 TAGTTTTAAT
1 TAATTTTAAT
7364453 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:7364436 original size:22 final size:23
Alignment explanation
Indices: 7364426--7364487 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
7364416 TTACTAACAA
* * *
7364426 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
7364448 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
*
7364471 TTAATTTTAATTAAAAA
1 TTAATTTTAATAAAAAA
7364488 CGGGCCGGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.30
23 23 0.70
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:7366119 original size:25 final size:25
Alignment explanation
Indices: 7366016--7366119 Score: 70
Period size: 25 Copynumber: 4.2 Consensus size: 25
7366006 TGACTCGCAA
*
7366016 GAGCTTCCCGATATACA-A-CTTGTAT
1 GAGCTTCCCG-T-TACATAGCTCGTAT
* * **
7366041 GAGCTTTCCGTTACTTAGCTCACAT
1 GAGCTTCCCGTTACATAGCTCGTAT
* * * * *
7366066 GAGCTTCCTGTTATATGGCTCGAAA
1 GAGCTTCCCGTTACATAGCTCGTAT
7366091 GAGCTTCCCGTTTACAT-GCTCGTAT
1 GAGCTTCCCG-TTACATAGCTCGTAT
7366116 GAGC
1 GAGC
7366120 ACATATGTAT
Statistics
Matches: 59, Mismatches: 17, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
23 3 0.05
24 2 0.03
25 49 0.83
26 5 0.08
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCGTTACATAGCTCGTAT
Found at i:7370413 original size:28 final size:28
Alignment explanation
Indices: 7370382--7370445 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
7370372 TAGATTACGA
* *
7370382 ACTCTAGACCCTAAACTTTAGACCAGAG
1 ACTCTAGACCCTAAACCTTAGACCACAG
* * *
7370410 ACTCTAAACCTTAAACCTTGGACCACAG
1 ACTCTAGACCCTAAACCTTAGACCACAG
7370438 ACTCTAGA
1 ACTCTAGA
7370446 TTTTGGACCC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.36, C:0.30, G:0.12, T:0.22
Consensus pattern (28 bp):
ACTCTAGACCCTAAACCTTAGACCACAG
Found at i:7372556 original size:21 final size:21
Alignment explanation
Indices: 7372503--7372552 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
7372493 AAAAGGTTTA
7372503 ATTTATAATTTGAATAATTAC
1 ATTTATAATTTGAATAATTAC
* *
7372524 ATTTATTTATTTGAATAATTTC
1 ATTTA-TAATTTGAATAATTAC
7372546 A-TTATAA
1 ATTTATAA
7372553 ATTTTTATCC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 8 0.32
22 15 0.60
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.52
Consensus pattern (21 bp):
ATTTATAATTTGAATAATTAC
Found at i:7376668 original size:9 final size:9
Alignment explanation
Indices: 7376654--7376822 Score: 181
Period size: 9 Copynumber: 19.4 Consensus size: 9
7376644 TTTTTATGTA
7376654 TTATGTAAG
1 TTATGTAAG
7376663 TTATGTAAG
1 TTATGTAAG
*
7376672 TTGTGT-A-
1 TTATGTAAG
*
7376679 TTATGTGAG
1 TTATGTAAG
7376688 TTATGTAAG
1 TTATGTAAG
7376697 TTATGTAAG
1 TTATGTAAG
*
7376706 CTATGT-A-
1 TTATGTAAG
*
7376713 TTATGTAAA
1 TTATGTAAG
*
7376722 TAATGTAAG
1 TTATGTAAG
*
7376731 TTA-GGAGAG
1 TTATGTA-AG
7376740 TTATGT-A-
1 TTATGTAAG
7376747 TTATGTAAG
1 TTATGTAAG
*
7376756 TTATTTAAG
1 TTATGTAAG
* *
7376765 TTATTTAAT
1 TTATGTAAG
7376774 TTATGTAAG
1 TTATGTAAG
* *
7376783 TTATTTAAT
1 TTATGTAAG
7376792 TTATGTAAG
1 TTATGTAAG
7376801 TTATGTAAG
1 TTATGTAAG
7376810 TTATGTAAG
1 TTATGTAAG
7376819 TTAT
1 TTAT
7376823 TTAATTTGAA
Statistics
Matches: 134, Mismatches: 18, Indels: 16
0.80 0.11 0.10
Matches are distributed among these distances:
7 16 0.12
8 8 0.06
9 109 0.81
10 1 0.01
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:7376678 original size:25 final size:25
Alignment explanation
Indices: 7376647--7376822 Score: 119
Period size: 25 Copynumber: 6.8 Consensus size: 25
7376637 TGATATATTT
7376647 TTATGTATTATGTAAGTTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
* *
7376672 TTGTGTATTATGTGAGTTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAG
* *
7376697 TTATGTAAGCTATGT-A-TTATGTAAA
1 TTATGT-A-TTATGTAAGTTATGTAAG
* *
7376722 TAATGTAAGTTA-GGAGAGTTATGT-A-
1 TTATGT-A-TTATGTA-AGTTATGTAAG
* * *
7376747 TTATGTAAGTTATTTAAGTTATTTAAT
1 TTATGT-A-TTATGTAAGTTATGTAAG
* *
7376774 TTATGTAAGTTATTTAATTTATGTAAG
1 TTATGT-A-TTATGTAAGTTATGTAAG
7376801 TTATGTAAGTTATGTAAGTTAT
1 TTATGT-A-TTATGTAAGTTAT
7376823 TTAATTTGAA
Statistics
Matches: 126, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.01
25 64 0.51
26 6 0.05
27 55 0.44
ACGTcount: A:0.32, C:0.01, G:0.19, T:0.48
Consensus pattern (25 bp):
TTATGTATTATGTAAGTTATGTAAG
Found at i:7376692 original size:34 final size:34
Alignment explanation
Indices: 7376618--7376816 Score: 199
Period size: 34 Copynumber: 5.8 Consensus size: 34
7376608 ACTATAAATG
* *
7376618 AGTTATGTAAGTTATGATATGATATAT-TTTTATGT-
1 AGTTATGTAAGTTATG-TAAG-T-TATGTATTATGTA
* *
7376653 A-TTATGTAAGTTATGTAAGTTGTGTATTATGTG
1 AGTTATGTAAGTTATGTAAGTTATGTATTATGTA
*
7376686 AGTTATGTAAGTTATGTAAGCTATGTATTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTATTATGTA
* * *
7376720 AATAATGTAAGTTA-GGAGAGTTATGTATTATGTA
1 AGTTATGTAAGTTATGTA-AGTTATGTATTATGTA
* * * *
7376754 AGTTATTTAAGTTATTTAATTTATGTAAGTTATTTA
1 AGTTATGTAAGTTATGTAAGTTATGT-A-TTATGTA
*
7376790 ATTTATGTAAGTTATGTAAGTTATGTA
1 AGTTATGTAAGTTATGTAAGTTATGTA
7376817 AGTTATTTAA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
31 2 0.01
32 8 0.06
33 6 0.04
34 88 0.65
35 4 0.03
36 28 0.21
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.48
Consensus pattern (34 bp):
AGTTATGTAAGTTATGTAAGTTATGTATTATGTA
Found at i:7380816 original size:7 final size:7
Alignment explanation
Indices: 7380800--7380848 Score: 55
Period size: 7 Copynumber: 6.9 Consensus size: 7
7380790 AAACTCTATT
*
7380800 CCTTAGA
1 CCTTAAA
7380807 CCTTAAA
1 CCTTAAA
7380814 CCTTAAA
1 CCTTAAA
7380821 CCATT-AA
1 CC-TTAAA
*
7380828 CCTTTAA
1 CCTTAAA
7380835 CCTTAAA
1 CCTTAAA
7380842 CCCTTAA
1 -CCTTAA
7380849 CCCTAAATTG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
6 2 0.05
7 27 0.73
8 8 0.22
ACGTcount: A:0.37, C:0.31, G:0.02, T:0.31
Consensus pattern (7 bp):
CCTTAAA
Found at i:7380829 original size:14 final size:13
Alignment explanation
Indices: 7380800--7380855 Score: 51
Period size: 14 Copynumber: 4.0 Consensus size: 13
7380790 AAACTCTATT
7380800 CCTTAGACCTTAAA
1 CCTTA-ACCTTAAA
7380814 CCTTAAACCATT-AA
1 CCTT-AACC-TTAAA
7380828 CCTTTAACCTTAAA
1 CC-TTAACCTTAAA
*
7380842 CCCTTAACCCTAAA
1 -CCTTAACCTTAAA
7380856 TTGACCTAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
13 2 0.06
14 27 0.75
15 7 0.19
ACGTcount: A:0.38, C:0.32, G:0.02, T:0.29
Consensus pattern (13 bp):
CCTTAACCTTAAA
Found at i:7380830 original size:21 final size:21
Alignment explanation
Indices: 7380806--7380855 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
7380796 TATTCCTTAG
7380806 ACCTTAAACCTTAAACCATTA
1 ACCTTAAACCTTAAACCATTA
* *
7380827 ACCTTTAACCTTAAACCCTTA
1 ACCTTAAACCTTAAACCATTA
*
7380848 ACCCTAAA
1 ACCTTAAA
7380856 TTGACCTAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (21 bp):
ACCTTAAACCTTAAACCATTA
Found at i:7381192 original size:39 final size:39
Alignment explanation
Indices: 7381138--7381221 Score: 125
Period size: 39 Copynumber: 2.2 Consensus size: 39
7381128 CCATATTCCC
* * *
7381138 TAAACCCTAAATCATAGAATATATATAAATCT-TAAATCT
1 TAAACCCTAAATCATAAAACATATATAAA-CTATAAACCT
7381177 TAAACCCTAAATCATAAAACATATATAAACTATAAACCT
1 TAAACCCTAAATCATAAAACATATATAAACTATAAACCT
7381216 TAAACC
1 TAAACC
7381222 TCAACCCTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
38 2 0.05
39 39 0.95
ACGTcount: A:0.51, C:0.19, G:0.01, T:0.29
Consensus pattern (39 bp):
TAAACCCTAAATCATAAAACATATATAAACTATAAACCT
Found at i:7381561 original size:115 final size:115
Alignment explanation
Indices: 7381345--7381569 Score: 258
Period size: 115 Copynumber: 2.0 Consensus size: 115
7381335 CTTTAAAAAA
* * * **
7381345 GCGCCACTAATGTCTCTAAACCTCCACAAGAAAACGATGCCGTTTGCTTAAATCTTTTTGCGGCG
1 GCGCCACTAATGTCTCTAAACCTCAACAACAAAACGATACCGTTTGCTTAAAAATTTTTGCGGCG
* *
7381410 CTTAACGTAAACCACCGCTAATGCTTAACTTATGCGGCGTTTTTAAAGTT
66 CTTAACGTAAACCACCGCTAATGATTAACTTATGCGGAGTTTTTAAAGTT
* * * *
7381460 GCGCCGCTAATGTAC-CTAAACCTTAACAACAAAACGTTACCGTTTGCTTAAAAATTTTTGGGGC
1 GCGCCACTAATGT-CTCTAAACCTCAACAACAAAACGATACCGTTTGCTTAAAAATTTTTGCGGC
* * * * *
7381524 GC-TACCGTAAAAGCGCCGCTAATTATTGAA-TTTTGCGGAGTTTTTA
65 GCTTAACGT-AAACCACCGCTAATGATT-AACTTATGCGGAGTTTTTA
7381570 GCTAAGCGCC
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
114 5 0.05
115 83 0.91
116 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (115 bp):
GCGCCACTAATGTCTCTAAACCTCAACAACAAAACGATACCGTTTGCTTAAAAATTTTTGCGGCG
CTTAACGTAAACCACCGCTAATGATTAACTTATGCGGAGTTTTTAAAGTT
Found at i:7381579 original size:115 final size:115
Alignment explanation
Indices: 7381343--7381594 Score: 253
Period size: 115 Copynumber: 2.2 Consensus size: 115
7381333 CGCTTTAAAA
* * * **
7381343 AAGCGCCACTAATGTCTCTAAACCTCCACAAGAAAACGATGCCGTTTGCTTAAATCTTTTTGCGG
1 AAGCGCCACTAATGTCTCTAAACCTCAACAACAAAACGATACCGTTTGCTTAAAAATTTTTGCGG
* *
7381408 CGCTTAACGTAAACCACCGCTAATGCTTAACTTATGCGGCGTTTTTAAAGT
66 CGCTTAACGTAAACCACCGCTAATGATTAACTTATGCGGAGTTTTT-AAGT
* * * * *
7381459 -TGCGCCGCTAATGTAC-CTAAACCTTAACAACAAAACGTTACCGTTTGCTTAAAAATTTTTGGG
1 AAGCGCCACTAATGT-CTCTAAACCTCAACAACAAAACGATACCGTTTGCTTAAAAATTTTTGCG
* * * * *
7381522 GCGC-TACCGTAAAAGCGCCGCTAATTATTGAA-TTTTGCGGAGTTTTT-AGCT
65 GCGCTTAACGT-AAACCACCGCTAATGATT-AACTTATGCGGAGTTTTTAAG-T
* *
7381573 AAGCGCCATTAATATCTCTAAA
1 AAGCGCCACTAATGTCTCTAAA
7381595 ATCTAAAAAA
Statistics
Matches: 109, Mismatches: 21, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
113 2 0.02
114 7 0.06
115 97 0.89
116 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (115 bp):
AAGCGCCACTAATGTCTCTAAACCTCAACAACAAAACGATACCGTTTGCTTAAAAATTTTTGCGG
CGCTTAACGTAAACCACCGCTAATGATTAACTTATGCGGAGTTTTTAAGT
Found at i:7381929 original size:176 final size:176
Alignment explanation
Indices: 7381704--7382025 Score: 473
Period size: 176 Copynumber: 1.8 Consensus size: 176
7381694 AACAGAAAAC
* ** *
7381704 GACGGCGTATGCTTAAAACTTTTTGCGGCGCTTCCTCCAAATTGCCGCTAATGGTTGACTTCAGC
1 GACGGCGTACGCTTAAAACTTTTTGCGGCGCTTCCTCCAAAGCGCCGCTAATGATTGACTTCAGC
**** *
7381769 GGCGATTTCTTTAAAGCGCCACTATGGTGTCTAAAACTCAACAAGAAAACGATGTCGTTCGGTAA
66 GGCGATTTAAAGAAAGCGCCACTATGGTGTCTAAAACTCAACAAGAAAACGACGTCGTTCGGTAA
* *
7381834 AATCTTTTGTGGCGCTCCAGGGAAGCACCGCCACTATTGTCCCTAA
131 AAACCTTTGTGGCGCTCCAGGGAAGCACCGCCACTATTGTCCCTAA
* ***
7381880 GACGGCGTACGCTTAAAACTTTTTTCGGCGCTTCCTCTGCAGCGCCGCTAATGATTGACTTCAGC
1 GACGGCGTACGCTTAAAACTTTTTGCGGCGCTTCCTCCAAAGCGCCGCTAATGATTGACTTCAGC
* * * *
7381945 GGCGCTTTAAAGAAAGCGCCACTATTGTGTCTAAAACTCAACAAGAAAATGGCGTCGTTCGGTAA
66 GGCGATTTAAAGAAAGCGCCACTATGGTGTCTAAAACTCAACAAGAAAACGACGTCGTTCGGTAA
7382010 AAACCTTTGTGGCGCT
131 AAACCTTTGTGGCGCT
7382026 TTGGGAAAGC
Statistics
Matches: 127, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
176 127 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (176 bp):
GACGGCGTACGCTTAAAACTTTTTGCGGCGCTTCCTCCAAAGCGCCGCTAATGATTGACTTCAGC
GGCGATTTAAAGAAAGCGCCACTATGGTGTCTAAAACTCAACAAGAAAACGACGTCGTTCGGTAA
AAACCTTTGTGGCGCTCCAGGGAAGCACCGCCACTATTGTCCCTAA
Found at i:7388222 original size:27 final size:25
Alignment explanation
Indices: 7388176--7388225 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
7388166 TTAACCATCA
*
7388176 ATTTTTCAAAAAAAACTTAATTATT
1 ATTTTTCAAAAAAAAATTAATTATT
*
7388201 ATTTTTTAAAAAACAATATTAATTA
1 ATTTTTCAAAAAA-AA-ATTAATTA
7388226 AAATAGTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 12 0.57
26 2 0.10
27 7 0.33
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (25 bp):
ATTTTTCAAAAAAAAATTAATTATT
Found at i:7388334 original size:24 final size:24
Alignment explanation
Indices: 7388310--7388355 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
7388300 TTTCTGAATT
*
7388310 TTTTTATAT-TTTTTAT-ATTTTA
1 TTTTTAAATATTTTTATAATTTTA
7388332 TTTTTAAATATTTTTATAATTTTA
1 TTTTTAAATATTTTTATAATTTTA
7388356 AATTATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 8 0.38
23 7 0.33
24 6 0.29
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTTTAAATATTTTTATAATTTTA
Found at i:7388795 original size:25 final size:25
Alignment explanation
Indices: 7388767--7388816 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7388757 ATTTTAGTCC
* *
7388767 TTATAATTTAATTTTTTTGTTTTTT
1 TTATAATTTAAATTTTGTGTTTTTT
**
7388792 TTATCTTTTAAATTTTGTGTTTTTT
1 TTATAATTTAAATTTTGTGTTTTTT
7388817 GTCAAATCAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.18, C:0.02, G:0.06, T:0.74
Consensus pattern (25 bp):
TTATAATTTAAATTTTGTGTTTTTT
Found at i:7391483 original size:173 final size:174
Alignment explanation
Indices: 7391190--7391547 Score: 709
Period size: 173 Copynumber: 2.1 Consensus size: 174
7391180 AATTACATCA
7391190 CAGAAATACAAAATTTAGAAGGGCGTATCGATGTTGTAAACGACAAAAACATAAACATTTCTGAA
1 CAGAAATACAAAATTTAGAAGGGCGTATCGATGTTGTAAACGACAAAAACATAAACATTTCTGAA
7391255 TCAGAACTTTTGAAATCTAAAATAAAGGCTACATTTCAACTTTCTTTTAATCTTTGGCAACATCC
66 TCAGAACTTTTGAAATCTAAAATAAAGGCTACATTTCAACTTTCTTTTAATCTTTGGCAACATCC
7391320 TTAAAACACAATACATGACACAGTCTAAAGCAGCAAAACAAAAG
131 TTAAAACACAATACATGACACAGTCTAAAGCAGCAAAACAAAAG
7391364 CAG-AATACAAAATTTAGAAGGGCGTATCGATGTTGTAAACGACAAAAACATAAACATTTCTGAA
1 CAGAAATACAAAATTTAGAAGGGCGTATCGATGTTGTAAACGACAAAAACATAAACATTTCTGAA
7391428 TCAGAACTTTTGAAATCTAAAATAAAGGCTACATTTCAACTTTCTTTTAATCTTTGGCAACATCC
66 TCAGAACTTTTGAAATCTAAAATAAAGGCTACATTTCAACTTTCTTTTAATCTTTGGCAACATCC
7391493 TTAAAACACAATACATGACACAGTCTAAAGCAGCAAAACAAAAG
131 TTAAAACACAATACATGACACAGTCTAAAGCAGCAAAACAAAAG
7391537 CAGAAATACAA
1 CAGAAATACAA
7391548 GATGGCATTG
Statistics
Matches: 183, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
173 173 0.95
174 10 0.05
ACGTcount: A:0.44, C:0.18, G:0.13, T:0.25
Consensus pattern (174 bp):
CAGAAATACAAAATTTAGAAGGGCGTATCGATGTTGTAAACGACAAAAACATAAACATTTCTGAA
TCAGAACTTTTGAAATCTAAAATAAAGGCTACATTTCAACTTTCTTTTAATCTTTGGCAACATCC
TTAAAACACAATACATGACACAGTCTAAAGCAGCAAAACAAAAG
Found at i:7398751 original size:63 final size:63
Alignment explanation
Indices: 7398648--7398841 Score: 243
Period size: 63 Copynumber: 3.1 Consensus size: 63
7398638 CTTTCCATGA
* * *
7398648 CTCAACCA-GAGCAACCTCATACCATACATTACAGTATAGCAGCACCAGCACCTTCGGCTACTC
1 CTCAA-CAGGAGCAACCTCATACCATACATTACAGTATAGCAGCACCAGGACCTTCCGCAACTC
** * * *
7398711 CTCAACAGGAGCAACCTCAGGCCATACATTACAGT-T--TAGCACCAGGACCTTCTGCGACTC
1 CTCAACAGGAGCAACCTCATACCATACATTACAGTATAGCAGCACCAGGACCTTCCGCAACTC
* * * *
7398771 CTCAACAGGAGCAGCCTCTTACCATACATTACAGTATAGCAGCACCGGGACCTTCCACAACTC
1 CTCAACAGGAGCAACCTCATACCATACATTACAGTATAGCAGCACCAGGACCTTCCGCAACTC
7398834 CTCAACAG
1 CTCAACAG
7398842 AAGGCATCAC
Statistics
Matches: 112, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
60 51 0.46
61 1 0.01
62 3 0.03
63 57 0.51
ACGTcount: A:0.30, C:0.35, G:0.15, T:0.19
Consensus pattern (63 bp):
CTCAACAGGAGCAACCTCATACCATACATTACAGTATAGCAGCACCAGGACCTTCCGCAACTC
Found at i:7398770 original size:120 final size:121
Alignment explanation
Indices: 7398555--7398841 Score: 343
Period size: 120 Copynumber: 2.4 Consensus size: 121
7398545 CCTCGGGCTG
* ** *
7398555 TACATTACAGTATAGCAG---CGGGACCTTCAGCAACTCTTCAACAGGAGGGACCTCAGGCTATA
1 TACATTACAGTATAGCAGCACCGGGACCTTCAGCAACTCCTCAACAGGAGCAACCTCAGGCCATA
* * * *
7398617 CATTACAGTGTAGCATCGGGACTTTCCATGA-CTCAACCA-GAGCAACCTCATACCA
66 CATTACAGTGTAGCACCAGGACCTTCCACGACCTCAA-CAGGAGCAACCTCATACCA
* * * *
7398672 TACATTACAGTATAGCAGCACCAGCACCTTCGGCTACTCCTCAACAGGAGCAACCTCAGGCCATA
1 TACATTACAGTATAGCAGCACCGGGACCTTCAGCAACTCCTCAACAGGAGCAACCTCAGGCCATA
* ** * *
7398737 CATTACAGTTTAGCACCAGGACCTTCTGCGACTCCTCAACAGGAGCAGCCTCTTACCA
66 CATTACAGTGTAGCACCAGGACCTTCCACGA--CCTCAACAGGAGCAACCTCATACCA
7398795 TACATTACAGTATAGCAGCACCGGGACCTTCCA-CAACTCCTCAACAG
1 TACATTACAGTATAGCAGCACCGGGACCTT-CAGCAACTCCTCAACAG
7398842 AAGGCATCAC
Statistics
Matches: 141, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
117 18 0.13
120 60 0.43
122 2 0.01
123 60 0.43
124 1 0.01
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.21
Consensus pattern (121 bp):
TACATTACAGTATAGCAGCACCGGGACCTTCAGCAACTCCTCAACAGGAGCAACCTCAGGCCATA
CATTACAGTGTAGCACCAGGACCTTCCACGACCTCAACAGGAGCAACCTCATACCA
Found at i:7398781 original size:60 final size:60
Alignment explanation
Indices: 7398555--7398841 Score: 233
Period size: 60 Copynumber: 4.7 Consensus size: 60
7398545 CCTCGGGCTG
* * * * ** * *
7398555 TACATTACAGTATAGCAGCGGGACCTTCAGCAACTCTTCAACAGGAGGGACCTCAGGCTA
1 TACATTACAGTATAGCACCAGGACCTTCTGCAACTCCTCAACAGGAGCAACCTCAGACCA
* * * * * *
7398615 TACATTACAGTGTAGCATCGGGA-CTT-T-CCA-TGACTCAACCA-GAGCAACCTCATACCA
1 TACATTACAGTATAGCACCAGGACCTTCTGCAACT-CCTCAA-CAGGAGCAACCTCAGACCA
* * * *
7398672 TACATTACAGTATAGCAGCACCAGCACCTTCGGCTACTCCTCAACAGGAGCAACCTCAGGCCA
1 TACATTACAGTAT---AGCACCAGGACCTTCTGCAACTCCTCAACAGGAGCAACCTCAGACCA
* * * **
7398735 TACATTACAGTTTAGCACCAGGACCTTCTGCGACTCCTCAACAGGAGCAGCCTCTTACCA
1 TACATTACAGTATAGCACCAGGACCTTCTGCAACTCCTCAACAGGAGCAACCTCAGACCA
* **
7398795 TACATTACAGTATAGCAGCACCGGGACCTTCCACAACTCCTCAACAG
1 TACATTACAGTAT---AGCACCAGGACCTTCTGCAACTCCTCAACAG
7398842 AAGGCATCAC
Statistics
Matches: 181, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
56 1 0.01
57 29 0.16
58 2 0.01
59 3 0.02
60 80 0.44
61 3 0.02
62 2 0.01
63 60 0.33
64 1 0.01
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.21
Consensus pattern (60 bp):
TACATTACAGTATAGCACCAGGACCTTCTGCAACTCCTCAACAGGAGCAACCTCAGACCA
Found at i:7407391 original size:21 final size:21
Alignment explanation
Indices: 7407367--7407406 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7407357 GTTGAGGGAC
* *
7407367 CTAATTAAAATTTTTAAAAGT
1 CTAATGAAAATTTTAAAAAGT
*
7407388 CTAATGAAGATTTTAAAAA
1 CTAATGAAAATTTTAAAAA
7407407 ATTCATGGGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (21 bp):
CTAATGAAAATTTTAAAAAGT
Found at i:7410401 original size:63 final size:62
Alignment explanation
Indices: 7410224--7410521 Score: 229
Period size: 63 Copynumber: 4.8 Consensus size: 62
7410214 CGACCTCGGT
** * * * *
7410224 CCATACATTACAGTATAGCAG---CGGGACCTTCAGTGACTCAC-CAACAAGAGCAACCTCAGT
1 CCATACATTACAGTATAGCAGCACCGGGACCTTC-GCAACTC-CTCAACAGGAACAACCTCTGA
* * * * * *
7410284 CCATACACTACAG---CGTAGCTCCGGGACCTTC-CACGGCTCCTCAACCA-GAGCAACCTCTGA
1 CCATACATTACAGTATAGCAGCACCGGGACCTTCGCA--ACTCCTCAA-CAGGAACAACCTCTGA
* * *
7410344 CCATACATTACAGTATAGCAGCACCGGGACCTTCGGCAATTCCTCAACAGGAACAACCTCAGG
1 CCATACATTACAGTATAGCAGCACCGGGACCTTC-GCAACTCCTCAACAGGAACAACCTCTGA
* * * * * *
7410407 CCATGCATTACAGTGTAGCAGCATCAGGACCTTC-CATGACTCCTCAACAGGACCAACCTCTTA
1 CCATACATTACAGTATAGCAGCACCGGGACCTTCGCA--ACTCCTCAACAGGAACAACCTCTGA
* * *
7410470 CCATACATTACAGTATAACAGCACCGGGACCTTCCGCGACTACTCAACAGGA
1 CCATACATTACAGTATAGCAGCACCGGGACCTT-CGCAACTCCTCAACAGGA
7410522 GCCAGCAGTT
Statistics
Matches: 188, Mismatches: 33, Indels: 31
0.75 0.13 0.12
Matches are distributed among these distances:
57 3 0.02
59 1 0.01
60 51 0.27
61 4 0.02
62 2 0.01
63 123 0.65
64 1 0.01
65 3 0.02
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.18
Consensus pattern (62 bp):
CCATACATTACAGTATAGCAGCACCGGGACCTTCGCAACTCCTCAACAGGAACAACCTCTGA
Found at i:7410475 original size:126 final size:123
Alignment explanation
Indices: 7410224--7410521 Score: 345
Period size: 126 Copynumber: 2.4 Consensus size: 123
7410214 CGACCTCGGT
* * * *
7410224 CCATACATTACAGTATAGCAG---CGGGACCTTCAGTGACTCAC-CAACAAGAGCAACCTCAGTC
1 CCATACATTACAGTATAGCAGCACCGGGACCTTCAGCGACTC-CTCAACAGGAACAACCTCAGGC
* * * *
7410285 CATACACTACAGCGTAGCTCCGGGACCTTCCACGGCTCCTCAACCAGAGCAACCTCTGA
65 CATACACTACAGCGTAGCGCCAGGACCTTCCACGACTCCTCAACCAGACCAACCTCTGA
* * *
7410344 CCATACATTACAGTATAGCAGCACCGGGACCTTCGGCAATTCCTCAACAGGAACAACCTCAGGCC
1 CCATACATTACAGTATAGCAGCACCGGGACCTTCAGCGACTCCTCAACAGGAACAACCTCAGGCC
* * * * *
7410409 ATGCATTACAGTGTAGCAGCATCAGGACCTTCCATGACTCCTCAA-CAGGACCAACCTCTTA
66 ATACACTACAGCGTAGC-GC--CAGGACCTTCCACGACTCCTCAACCA-GACCAACCTCTGA
* * *
7410470 CCATACATTACAGTATAACAGCACCGGGACCTTCCGCGACTACTCAACAGGA
1 CCATACATTACAGTATAGCAGCACCGGGACCTTCAGCGACTCCTCAACAGGA
7410522 GCCAGCAGTT
Statistics
Matches: 149, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
120 21 0.14
122 1 0.01
123 46 0.31
124 1 0.01
125 2 0.01
126 78 0.52
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.18
Consensus pattern (123 bp):
CCATACATTACAGTATAGCAGCACCGGGACCTTCAGCGACTCCTCAACAGGAACAACCTCAGGCC
ATACACTACAGCGTAGCGCCAGGACCTTCCACGACTCCTCAACCAGACCAACCTCTGA
Found at i:7412147 original size:6 final size:6
Alignment explanation
Indices: 7412136--7412168 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
7412126 AATAAGGATC
*
7412136 GGTCAT GGTCAT GGTCAT GGTCAT GGTCTT GGT
1 GGTCAT GGTCAT GGTCAT GGTCAT GGTCAT GGT
7412169 AGGGAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.12, C:0.15, G:0.36, T:0.36
Consensus pattern (6 bp):
GGTCAT
Found at i:7412662 original size:3 final size:3
Alignment explanation
Indices: 7412654--7412681 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
7412644 TGGGTCCTGT
7412654 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC T
7412682 GTAATGTTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:7413694 original size:58 final size:61
Alignment explanation
Indices: 7413563--7413696 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 61
7413553 TGAAAACCTT
* * *
7413563 AAAGTCTAGAATAATTGTCAAGTTTAGGGATTAACTTGGACACAAAAGAAGTTCAAGCCCC
1 AAAGTGTAGAATAATTGTCAAGTTTAGGGATTAACTTGGACACAAAAGAAATTCAAACCCC
* *
7413624 AAAGTGTA-AATAATTGTCAATTTTAGGG-TCTAATTTGGACA-AAAA-AAATTCAAACCCC
1 AAAGTGTAGAATAATTGTCAAGTTTAGGGAT-TAACTTGGACACAAAAGAAATTCAAACCCC
7413682 AATA-TG-AGAATAATT
1 AA-AGTGTAGAATAATT
7413697 ACAAATTCAA
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
57 1 0.02
58 22 0.34
59 6 0.09
60 29 0.45
61 7 0.11
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (61 bp):
AAAGTGTAGAATAATTGTCAAGTTTAGGGATTAACTTGGACACAAAAGAAATTCAAACCCC
Found at i:7421532 original size:110 final size:110
Alignment explanation
Indices: 7421339--7421659 Score: 527
Period size: 110 Copynumber: 2.9 Consensus size: 110
7421329 AAGGAAAATT
*
7421339 TTTCAAAATAAGGTAATGTTTTGCCGTTTGGAAATTCGAGAAAACATGCCCTAATGTGCTGGGTG
1 TTTCAAAATAAGGCAATGTTTTGCCGTTTGGAAATTCGAGAAAACATGCCCTAATGTGCTGGGTG
7421404 TCGATTTTTCTCATTCAACCAAATGGCTAAATATCTTTTTAAAAA
66 TCGATTTTTCTCATTCAACCAAATGGCTAAATATCTTTTTAAAAA
7421449 TTTCAAAATAAGGCAATGTTTTGCCGTTTGGAAATTCGAGAAAACATGCCCTAATGTGCTGGGTG
1 TTTCAAAATAAGGCAATGTTTTGCCGTTTGGAAATTCGAGAAAACATGCCCTAATGTGCTGGGTG
* * * *
7421514 TCTATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAA
66 TCGATTTTTCTCATTCAACCAAATGGCTAAATATCTTTTTAAAAA
* * *
7421559 TTTTAAAATAATGCAATGTTTTG-CTTTTGGAAATTCGAGAAAACATGCCCTAATGTGCTGGGTG
1 TTTCAAAATAAGGCAATGTTTTGCCGTTTGGAAATTCGAGAAAACATGCCCTAATGTGCTGGGTG
* * * *
7421623 TCGATTTTTATCATTTAACCAAATAGCCAAATATCTT
66 TCGATTTTTCTCATTCAACCAAATGGCTAAATATCTT
7421660 CTTGAATTTC
Statistics
Matches: 195, Mismatches: 16, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
109 69 0.35
110 126 0.65
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (110 bp):
TTTCAAAATAAGGCAATGTTTTGCCGTTTGGAAATTCGAGAAAACATGCCCTAATGTGCTGGGTG
TCGATTTTTCTCATTCAACCAAATGGCTAAATATCTTTTTAAAAA
Found at i:7424896 original size:16 final size:15
Alignment explanation
Indices: 7424875--7424927 Score: 79
Period size: 16 Copynumber: 3.3 Consensus size: 15
7424865 TTGGTTGGCT
7424875 GTAATGGAATAGAGAC
1 GTAATGGAATAGAG-C
7424891 GTAATGGAATAGATGC
1 GTAATGGAATAGA-GC
7424907 GTAATGGAATAGAGGC
1 GTAATGGAATAGA-GC
7424923 GTAAT
1 GTAAT
7424928 AGGTAATCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
16 34 0.97
17 1 0.03
ACGTcount: A:0.40, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
GTAATGGAATAGAGC
Found at i:7424958 original size:45 final size:44
Alignment explanation
Indices: 7424907--7424996 Score: 153
Period size: 44 Copynumber: 2.0 Consensus size: 44
7424897 GAATAGATGC
*
7424907 GTAATGGAATAGAGGCGTAATAGGTAATCTTTTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAAT-GGTAATCTTGTGTTTGGTTGAAT
*
7424952 GTAATGGAATAGAGGCGTAATGGTATTCTTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATGGTAATCTTGTGTTTGGTTGAAT
7424996 G
1 G
7424997 GAATAGAGGG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
44 22 0.51
45 21 0.49
ACGTcount: A:0.27, C:0.04, G:0.31, T:0.38
Consensus pattern (44 bp):
GTAATGGAATAGAGGCGTAATGGTAATCTTGTGTTTGGTTGAAT
Found at i:7424997 original size:39 final size:43
Alignment explanation
Indices: 7424907--7425013 Score: 141
Period size: 45 Copynumber: 2.5 Consensus size: 43
7424897 GAATAGATGC
*
7424907 GTAATGGAATAGAGGCGTAATAGGTAATCTTTTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGGTAATCTTGTGTTTGGTT--AT
*
7424952 GTAATGGAATAGAGGCGTAAT-GGTATTCTTGTGTTTGG-T-T
1 GTAATGGAATAGAGGCGTAATAGGTAATCTTGTGTTTGGTTAT
*
7424992 G-AATGGAATAGAGGGGTAATAG
1 GTAATGGAATAGAGGCGTAATAG
7425014 CATAAGGAAA
Statistics
Matches: 58, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
39 18 0.31
40 3 0.05
43 1 0.02
44 15 0.26
45 21 0.36
ACGTcount: A:0.29, C:0.04, G:0.33, T:0.35
Consensus pattern (43 bp):
GTAATGGAATAGAGGCGTAATAGGTAATCTTGTGTTTGGTTAT
Found at i:7425131 original size:21 final size:21
Alignment explanation
Indices: 7425107--7425172 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
7425097 TTAATAAGCT
7425107 TAATTTAATAAAAATAATATA
1 TAATTTAATAAAAATAATATA
7425128 TAATTTAAT-AAAAT-ATAT-
1 TAATTTAATAAAAATAATATA
* *
7425146 GAATTTACTAAAATCATAATATA
1 TAATTTAATAAAA--ATAATATA
7425169 TAAT
1 TAAT
7425173 ACTATAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
18 7 0.19
19 7 0.19
20 5 0.14
21 11 0.30
22 4 0.11
23 3 0.08
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (21 bp):
TAATTTAATAAAAATAATATA
Found at i:7425144 original size:17 final size:18
Alignment explanation
Indices: 7425122--7425159 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
7425112 TAATAAAAAT
7425122 AATATAT-AATTTAATAA
1 AATATATGAATTTAATAA
*
7425139 AATATATGAATTTACTAA
1 AATATATGAATTTAATAA
7425157 AAT
1 AAT
7425160 CATAATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (18 bp):
AATATATGAATTTAATAA
Found at i:7425158 original size:39 final size:40
Alignment explanation
Indices: 7425108--7425185 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 40
7425098 TAATAAGCTT
*
7425108 AATTTAATAAAA-ATAATATATAAT-TTAATAAAATATATG
1 AATTTAATAAAACATAATATATAATACT-ATAAAATATATG
*
7425147 AATTTACTAAAATCATAATATATAATACTATAAAATATA
1 AATTTAATAAAA-CATAATATATAATACTATAAAATATA
7425186 ATTTAAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
39 11 0.32
41 22 0.65
42 1 0.03
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (40 bp):
AATTTAATAAAACATAATATATAATACTATAAAATATATG
Found at i:7427645 original size:33 final size:33
Alignment explanation
Indices: 7427595--7427830 Score: 128
Period size: 33 Copynumber: 6.7 Consensus size: 33
7427585 TCAACCGTTA
* *
7427595 TCGGTGGATTCAGCACTTAGCAACCACCAGTGAT
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
* *
7427629 TCGGGGAATCAACACTTAGCAACTCCTTTCACATTCAAAGAT
1 TCGGGGAATCAGCACTTAGCAA---C---CAC---CAATGAT
7427671 AT-GGTGGAATCAGCACTTAGCAACCACCAATGAT
1 -TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
7427705 TCGGGGAATCAGCACTTAGCAACC-CC-----T
1 TCGGGGAATCAGCACTTAGCAACCACCAATGAT
* *
7427732 T-GGGGAAATCAGCACTTAGCAACCCCCTTCACATTTAAAAT
1 TCGGGG-AATCAGCACTTAGCAA-CCAC--CA-A--T--GAT
* * *
7427773 ACGGTGGAATCAGCACTTAGCAACCACTAATAAT
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
*
7427807 TCGGGGAATCAGCACTTAGGAACC
1 TCGGGGAATCAGCACTTAGCAACC
7427831 CCTTGGGGAA
Statistics
Matches: 162, Mismatches: 11, Indels: 59
0.70 0.05 0.25
Matches are distributed among these distances:
26 4 0.02
27 18 0.11
28 2 0.01
29 1 0.01
31 1 0.01
32 2 0.01
33 56 0.35
34 18 0.11
36 2 0.01
37 3 0.02
38 1 0.01
39 4 0.02
40 1 0.01
41 4 0.02
42 25 0.15
43 20 0.12
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.22
Consensus pattern (33 bp):
TCGGGGAATCAGCACTTAGCAACCACCAATGAT
Found at i:7427736 original size:26 final size:27
Alignment explanation
Indices: 7427707--7427757 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
7427697 CCAATGATTC
7427707 GGGG-AATCAGCACTTAGCAACCCCTT
1 GGGGAAATCAGCACTTAGCAACCCCTT
7427733 GGGGAAATCAGCACTTAGCAACCCC
1 GGGGAAATCAGCACTTAGCAACCCC
7427758 CTTCACATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.29, C:0.31, G:0.24, T:0.16
Consensus pattern (27 bp):
GGGGAAATCAGCACTTAGCAACCCCTT
Found at i:7427792 original size:102 final size:103
Alignment explanation
Indices: 7427631--7427871 Score: 351
Period size: 102 Copynumber: 2.4 Consensus size: 103
7427621 CCAGTGATTC
* * * *
7427631 GGGG-AATCAACACTTAGCAACTCCTTTCACATTCAAAGATATGGTGGAATCAGCACTTAGCAAC
1 GGGGAAATCAGCACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAAC
*
7427695 CACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTT
66 CACCAATAATTCGGGGAATCAGCACTTAGCAACCCCTT
*
7427733 GGGGAAATCAGCACTTAGCAACCCCCTTCACATTTAAA-ATACGGTGGAATCAGCACTTAGCAAC
1 GGGGAAATCAGCACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAAC
* *
7427797 CACTAATAATTCGGGGAATCAGCACTTAGGAACCCCTT
66 CACCAATAATTCGGGGAATCAGCACTTAGCAACCCCTT
* * * * *
7427835 GGGGAAATTAGCACATAGCAATCCCCTTTATATTCAA
1 GGGGAAATCAGCACTTAGCAACCCCCTTCACATTCAA
7427872 TGTACTCCGG
Statistics
Matches: 124, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
102 95 0.77
103 29 0.23
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (103 bp):
GGGGAAATCAGCACTTAGCAACCCCCTTCACATTCAAAGATACGGTGGAATCAGCACTTAGCAAC
CACCAATAATTCGGGGAATCAGCACTTAGCAACCCCTT
Found at i:7432527 original size:45 final size:46
Alignment explanation
Indices: 7432454--7432562 Score: 170
Period size: 46 Copynumber: 2.4 Consensus size: 46
7432444 TACTTATGAT
*
7432454 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
7432497 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
*
7432543 CACTTATCACTTTCTCACTT
1 CACTTATCACTTTGTCACTT
7432563 TATAGCTACC
Statistics
Matches: 60, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
43 10 0.17
44 5 0.08
45 20 0.33
46 25 0.42
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGGCTAC
Found at i:7432580 original size:75 final size:76
Alignment explanation
Indices: 7432492--7432698 Score: 345
Period size: 75 Copynumber: 2.8 Consensus size: 76
7432482 GTGTAGCTAG
*
7432492 GCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTC
1 GCTACCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTC
*
7432557 TCACTTTAT-A
66 TCACTTGATCA
7432567 GCTACCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTC
1 GCTACCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTC
7432632 TCACTTGATCA
66 TCACTTGATCA
*
7432643 GATA--A---ATCACTTTCTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCAC
1 GCTACCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCAC
7432699 AATAATGCAC
Statistics
Matches: 128, Mismatches: 3, Indels: 6
0.93 0.02 0.04
Matches are distributed among these distances:
71 51 0.40
74 1 0.01
75 72 0.56
76 4 0.03
ACGTcount: A:0.28, C:0.26, G:0.11, T:0.35
Consensus pattern (76 bp):
GCTACCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAATGCTACCACTTATCACTTTC
TCACTTGATCA
Found at i:7432657 original size:25 final size:25
Alignment explanation
Indices: 7432623--7432672 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
7432613 GCTACCACTT
7432623 ATCACTTTCTCACTTGATCAGATAA
1 ATCACTTTCTCACTTGATCAGATAA
7432648 ATCACTTTCTCACTTGATCAGATAA
1 ATCACTTTCTCACTTGATCAGATAA
7432673 GTGTAGCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (25 bp):
ATCACTTTCTCACTTGATCAGATAA
Found at i:7432809 original size:19 final size:21
Alignment explanation
Indices: 7432769--7432815 Score: 71
Period size: 19 Copynumber: 2.3 Consensus size: 21
7432759 TTTTATTCTC
7432769 ATTTCATCAATAAATATATAT
1 ATTTCATCAATAAATATATAT
*
7432790 ATTTCATC-ATACAT-TATAT
1 ATTTCATCAATAAATATATAT
7432809 ATTTCAT
1 ATTTCAT
7432816 GAAATTAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 12 0.48
20 5 0.20
21 8 0.32
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTTCATCAATAAATATATAT
Found at i:7434289 original size:11 final size:13
Alignment explanation
Indices: 7434269--7434300 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7434259 AATAAATTAA
7434269 TAAAATATCAT-T
1 TAAAATATCATAT
7434281 TAAAA-ATCATAT
1 TAAAATATCATAT
7434293 TAAAATAT
1 TAAAATAT
7434301 TAATAAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAAATATCATAT
Found at i:7443718 original size:21 final size:21
Alignment explanation
Indices: 7443701--7443773 Score: 57
Period size: 22 Copynumber: 3.6 Consensus size: 21
7443691 ACCAAAAATT
7443701 TATTTTAAAAATTAAAAAAAG
1 TATTTTAAAAATTAAAAAAAG
**
7443722 TATTTTTAAAATATT--TTAAA-
1 TA-TTTTAAAA-ATTAAAAAAAG
*
7443742 -A-TTTAAAAATAAAAAAAAAG
1 TATTTTAAAAAT-TAAAAAAAG
7443762 TATTTTAAAAAT
1 TATTTTAAAAAT
7443774 ATTTTAAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 15
0.66 0.08 0.25
Matches are distributed among these distances:
16 2 0.05
17 7 0.18
19 4 0.10
21 6 0.15
22 17 0.44
23 3 0.08
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (21 bp):
TATTTTAAAAATTAAAAAAAG
Found at i:7443747 original size:39 final size:40
Alignment explanation
Indices: 7443704--7443790 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
7443694 AAAAATTTAT
* *
7443704 TTTAAAAAT-TAAAAAAAGTATTTTTAAAATATTTTAAAA
1 TTTAAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAA
7443743 TTTAAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAA
1 TTTAAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAA
*
7443783 TTAAAAAA
1 TTTAAAAA
7443791 AATTTAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
39 9 0.20
40 35 0.80
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (40 bp):
TTTAAAAATAAAAAAAAAGTATTTTAAAAATATTTTAAAA
Found at i:7443800 original size:17 final size:17
Alignment explanation
Indices: 7443739--7443801 Score: 56
Period size: 17 Copynumber: 3.8 Consensus size: 17
7443729 AAAATATTTT
*
7443739 AAAATTTAAAAATAAAA
1 AAAATTTAAAATTAAAA
** **
7443756 AAAAAGT-ATTTTAAAA
1 AAAATTTAAAATTAAAA
* *
7443772 ATATTTTAAAATTAAAA
1 AAAATTTAAAATTAAAA
7443789 AAAATTTAAAATT
1 AAAATTTAAAATT
7443802 TTTAAAAAAT
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
16 9 0.28
17 23 0.72
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATTTAAAATTAAAA
Done.