Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 22 of 153
Found at i:7443808 original size:18 final size:17
Alignment explanation
Indices: 7443763--7443811 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
7443753 AAAAAAAAGT
7443763 ATTTTAAAAATATTTTAAA
1 ATTTTAAAAA-A-TTTAAA
**
7443782 ATTAAAAAAAATTTAAA
1 ATTTTAAAAAATTTAAA
7443799 ATTTTTAAAAAAT
1 A-TTTTAAAAAAT
7443812 AAATATATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 7 0.28
18 10 0.40
19 8 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATTTTAAAAAATTTAAA
Found at i:7447342 original size:14 final size:13
Alignment explanation
Indices: 7447323--7447359 Score: 56
Period size: 14 Copynumber: 2.7 Consensus size: 13
7447313 TCTATTTACA
7447323 AAAATGAAAAAAT
1 AAAATGAAAAAAT
7447336 GAAAATGAAAAAAT
1 -AAAATGAAAAAAT
7447350 AAAGATGAAA
1 AAA-ATGAAA
7447360 TCAAAACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 3 0.14
14 19 0.86
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAATGAAAAAAT
Found at i:7449480 original size:15 final size:15
Alignment explanation
Indices: 7449460--7449513 Score: 67
Period size: 15 Copynumber: 3.6 Consensus size: 15
7449450 TTTTTTTCTA
7449460 AAAAATAATTTATTT
1 AAAAATAATTTATTT
*
7449475 AAAAATACTTTTATTT
1 AAAAATA-ATTTATTT
7449491 CAAAAAT-ATTTA-TT
1 -AAAAATAATTTATTT
7449505 AAAAATAAT
1 AAAAATAAT
7449514 ACTAAACACA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 6 0.18
14 4 0.12
15 11 0.32
16 7 0.21
17 6 0.18
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (15 bp):
AAAAATAATTTATTT
Found at i:7454314 original size:28 final size:29
Alignment explanation
Indices: 7454281--7454342 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
7454271 CATGGTCAAA
*
7454281 ATAATA-TTAATACTTTAAGTATTTAATT-
1 ATAATATTTAATACTTTAAAT-TTTAATTC
* *
7454309 ATAATATTTTATAGTTTAAATTTTAATTC
1 ATAATATTTAATACTTTAAATTTTAATTC
7454338 ATAAT
1 ATAAT
7454343 TTGATAACTC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
28 13 0.45
29 16 0.55
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (29 bp):
ATAATATTTAATACTTTAAATTTTAATTC
Found at i:7454330 original size:22 final size:22
Alignment explanation
Indices: 7454288--7454335 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
7454278 AAAATAATAT
*
7454288 TAATACTTTAAGTATTTAATTA
1 TAATACTTTAAGTATTAAATTA
* *
7454310 TAATATTTTATAGT-TTAAATTT
1 TAATACTTTA-AGTATTAAATTA
7454332 TAAT
1 TAAT
7454336 TCATAATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (22 bp):
TAATACTTTAAGTATTAAATTA
Found at i:7457122 original size:16 final size:17
Alignment explanation
Indices: 7457086--7457122 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
7457076 AATTTTATTT
*
7457086 TAATATTAAGTTTTAAA
1 TAATAATAAGTTTTAAA
7457103 -AATAATAA-TTTTAAA
1 TAATAATAAGTTTTAAA
7457118 TAATA
1 TAATA
7457123 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
TAATAATAAGTTTTAAA
Found at i:7457816 original size:76 final size:76
Alignment explanation
Indices: 7457729--7457869 Score: 203
Period size: 76 Copynumber: 1.9 Consensus size: 76
7457719 CTAATATTAT
7457729 TATTATGGTTAGTTATTAGGATTAGTAAAAACCCTAATTATTATT-TTAGTTAGTATGATTGTTA
1 TATTATGGTTAGTTATTAGGATTAGT-AAAACCCTAATTATTATTGTTAGTTAGTATGATTGTTA
7457793 GCGTTTACACTA
65 GCGTTTACACTA
* *** * * *
7457805 TATTATTGTTAGTTATTATTTTTAGTAAAACCCTAATTCTTATTGTTAGTTAGTATTATTTTTAG
1 TATTATGGTTAGTTATTAGGATTAGTAAAACCCTAATTATTATTGTTAGTTAGTATGATTGTTAG
7457870 TACAAAACTA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
75 17 0.30
76 40 0.70
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (76 bp):
TATTATGGTTAGTTATTAGGATTAGTAAAACCCTAATTATTATTGTTAGTTAGTATGATTGTTAG
CGTTTACACTA
Found at i:7457885 original size:76 final size:76
Alignment explanation
Indices: 7457726--7457903 Score: 202
Period size: 76 Copynumber: 2.4 Consensus size: 76
7457716 AGCCTAATAT
* **
7457726 TATTATTATGGTTAGTTATTAGGATTAGTAAAAACCCTAATTATTATTTTAGTTAGTATGATTGT
1 TATTATTATTGTTAGTTATTATTATTAGTAAAAACCCTAATTATTATTTTAGTTAGTATGATTGT
** *
7457791 TAGCGTTTACAC
66 TA-CGTCAAAAC
* * * *
7457803 TA-TATTATTGTTAGTTATTATTTTTAGT-AAAACCCTAATTCTTATTGTTAGTTAGTATTATTT
1 TATTATTATTGTTAGTTATTATTATTAGTAAAAACCCTAATTATTATT-TTAGTTAGTATGATTG
7457866 TTA-GTACAAAAC
65 TTACGT-CAAAAC
*
7457878 TATTATTATTATTA-TTATTATTATTA
1 TATTATTATTGTTAGTTATTATTATTA
7457904 TTATTATTAT
Statistics
Matches: 86, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
74 2 0.02
75 33 0.38
76 49 0.57
77 2 0.02
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.51
Consensus pattern (76 bp):
TATTATTATTGTTAGTTATTATTATTAGTAAAAACCCTAATTATTATTTTAGTTAGTATGATTGT
TACGTCAAAAC
Found at i:7457886 original size:3 final size:3
Alignment explanation
Indices: 7457878--7457915 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
7457868 AGTACAAAAC
7457878 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
7457916 GTGGTTAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:7459048 original size:158 final size:158
Alignment explanation
Indices: 7458623--7459098 Score: 631
Period size: 147 Copynumber: 3.1 Consensus size: 158
7458613 GCTGGAAATG
* * *
7458623 TATTAATTTATATTATTTTAGTACATAATGTTTGAAATGTATTAATTTGGTGTGTTTTTTTATAT
1 TATTATTTTATATTATTTT-GTACATAATGTTTGAAATGTATTATTTTAGTGTGTTTTTTTATAT
* * **
7458688 AAATTTAGTAAAAAAAACTGTTATTTTGGTTATTTGTTCGTATTTTTCTTATTTTC-AGATTTTA
65 AAATTTAGTAAAAAAATC-ATTATTTTGG-CCTTTGTTCGTATTTTTCTTATTTTCGA-ATTTTA
7458752 TTACTTTCAAAAAATATACTATTTTCGTATTT
127 TTACTTTCAAAAAATATACTATTTTCGTATTT
7458784 TA-TA--TT-T-TTA----GTACATAATGTTTGAAATGTATTATTTTA--GTG-TTTTTTATATA
1 TATTATTTTATATTATTTTGTACATAATGTTTGAAATGTATTATTTTAGTGTGTTTTTTTATATA
7458837 AATTTAGTAAAAAAACTCATTATTTTGGCCTTTGTTCGTATTTTTCTTATTTTCGAATTTTATTA
66 AATTTAGTAAAAAAA-TCATTATTTTGGCCTTTGTTCGTATTTTTCTTATTTTCGAATTTTATTA
* *
7458902 CTTTCAAAAAAGATACTATTTTCATATTT
130 CTTTCAAAAAATATACTATTTTCGTATTT
7458931 TATTATTTTATATTATTTTCGTACATAATGTTTGAAATGTATTATTTTAGTGTGTTTTTTTATAT
1 TATTATTTTATATTATTTT-GTACATAATGTTTGAAATGTATTATTTTAGTGTGTTTTTTTATAT
* * *
7458996 AAATTTAGT-AAAAAATCATTATTTTGGCCCTTTATTCGTATTTTTATT-TTTTCGGATTTTATT
65 AAATTTAGTAAAAAAATCATTATTTTGG-CCTTTGTTCGTATTTTTCTTATTTTCGAATTTTATT
* ** *
7459059 ACTTTTAGTAAATATACTATTTTCGTTTTT
129 ACTTTCAAAAAATATACTATTTTCGTATTT
7459089 TATTTATTTT
1 TA-TTATTTT
7459099 CGTATTTTAT
Statistics
Matches: 281, Mismatches: 17, Indels: 36
0.84 0.05 0.11
Matches are distributed among these distances:
147 62 0.22
148 38 0.14
149 4 0.01
150 2 0.01
151 28 0.10
152 3 0.01
156 3 0.01
157 30 0.11
158 54 0.19
159 34 0.12
160 21 0.07
161 2 0.01
ACGTcount: A:0.29, C:0.07, G:0.09, T:0.55
Consensus pattern (158 bp):
TATTATTTTATATTATTTTGTACATAATGTTTGAAATGTATTATTTTAGTGTGTTTTTTTATATA
AATTTAGTAAAAAAATCATTATTTTGGCCTTTGTTCGTATTTTTCTTATTTTCGAATTTTATTAC
TTTCAAAAAATATACTATTTTCGTATTT
Found at i:7459096 original size:17 final size:17
Alignment explanation
Indices: 7459076--7459110 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
7459066 GTAAATATAC
*
7459076 TATTTTCGTTTTTTATT
1 TATTTTCGTATTTTATT
7459093 TATTTTCGTATTTTATT
1 TATTTTCGTATTTTATT
7459110 T
1 T
7459111 TTTCATAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.06, G:0.06, T:0.74
Consensus pattern (17 bp):
TATTTTCGTATTTTATT
Found at i:7459284 original size:30 final size:30
Alignment explanation
Indices: 7459248--7459378 Score: 95
Period size: 30 Copynumber: 4.3 Consensus size: 30
7459238 AATTAAATAC
*
7459248 AATAATAAAACGTAGAATGTACACAACATA
1 AATAATAAAACATAGAATGTACACAACATA
* * ** * * *
7459278 AATAATAAATAAATAAAAACATAAATAATA-A
1 AATAATAAA-ACAT-AGAATGTACACAACATA
* * * **
7459309 AATAATAAGACATAGTATGCACGTAACATA
1 AATAATAAAACATAGAATGTACACAACATA
*
7459339 AATAATAAAACATAGAATGTACATAACATA
1 AATAATAAAACATAGAATGTACACAACATA
7459369 AA-AATTAAAA
1 AATAA-TAAAA
7459379 TTAAATTATG
Statistics
Matches: 75, Mismatches: 22, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
29 9 0.12
30 46 0.61
31 11 0.15
32 9 0.12
ACGTcount: A:0.62, C:0.09, G:0.07, T:0.22
Consensus pattern (30 bp):
AATAATAAAACATAGAATGTACACAACATA
Found at i:7460768 original size:152 final size:154
Alignment explanation
Indices: 7460581--7460882 Score: 416
Period size: 152 Copynumber: 2.0 Consensus size: 154
7460571 CTCTATTTTA
* *
7460581 AAATTAACACAATTTTTTAACCGATAATTGTAATTTAAATTAT-AATTATTTTTAAATTCT-TAA
1 AAATTAACACAATTTTTTAACCAATAATTGCAATTTAAATT-TCAATTATTTTTAAATT-TGTAA
* * * **
7460644 TTATCGCAA-TTTTATTAATTTATAATTATTTTAAATGTAATTTTAATAATATGATGAAAAATAA
64 TTACCACAATTTTTATTAAATTATAATTATTTTAAATGTAAAGTTAATAATATGAT-AAAAATAA
*
7460708 ATGTTATTTTT-ATAGTTCAAAAGTTT
128 ATATTATTTTTGATAGTTCAAAAGTTT
* ** *
7460734 AAATTAGCACAA-TTTTTAATTAATAATTGCAATTTAAGTTTCAATTATTTTTAAATTTGTAATT
1 AAATTAACACAATTTTTTAACCAATAATTGCAATTTAAATTTCAATTATTTTTAAATTTGTAATT
*
7460798 ACCATAATTTTTATTAAATTATAATTATTTTAAATGTAAAGTTAATAATATGATAAAAATAAATA
66 ACCACAATTTTTATTAAATTATAATTATTTTAAATGTAAAGTTAATAATATGATAAAAATAAATA
*
7460863 TTATTTTTGTTAGTTCAAAA
131 TTATTTTTGATAGTTCAAAA
7460883 CTTTTTCTAA
Statistics
Matches: 131, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
151 2 0.02
152 65 0.50
153 64 0.49
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.47
Consensus pattern (154 bp):
AAATTAACACAATTTTTTAACCAATAATTGCAATTTAAATTTCAATTATTTTTAAATTTGTAATT
ACCACAATTTTTATTAAATTATAATTATTTTAAATGTAAAGTTAATAATATGATAAAAATAAATA
TTATTTTTGATAGTTCAAAAGTTT
Found at i:7475233 original size:32 final size:31
Alignment explanation
Indices: 7475183--7475266 Score: 82
Period size: 32 Copynumber: 2.7 Consensus size: 31
7475173 AAATTTCTCT
* * *
7475183 TAATGTAATA-ATATTATTATCTTTTTAATTA
1 TAATTTAATATATTTTATTAT-TTTTTAACTA
7475214 TAATTTAATATATTTTATTAATTTTTTAACTA
1 TAATTTAATATATTTTATT-ATTTTTTAACTA
* *
7475246 TTATTTGAAT-TTTTTTATTAT
1 TAATTT-AATATATTTTATTAT
7475267 ATATATAATT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
31 11 0.24
32 29 0.64
33 5 0.11
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (31 bp):
TAATTTAATATATTTTATTATTTTTTAACTA
Found at i:7475924 original size:15 final size:15
Alignment explanation
Indices: 7475904--7475960 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
7475894 ATTCAATATT
7475904 AATATTTTAATAATA
1 AATATTTTAATAATA
*
7475919 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
7475938 AATATATTAATAATA
1 AATATTTTAATAATA
*
7475953 AATGTTTT
1 AATATTTT
7475961 CTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:7480560 original size:19 final size:21
Alignment explanation
Indices: 7480533--7480580 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
7480523 CAAATACGCC
*
7480533 AACATAAACTCG-AA-AGCTG
1 AACAGAAACTCGTAAGAGCTG
7480552 AACAGAAACTCGTAAGAGCTG
1 AACAGAAACTCGTAAGAGCTG
7480573 AACAGAAA
1 AACAGAAA
7480581 GTAAAACACG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 11 0.42
20 2 0.08
21 13 0.50
ACGTcount: A:0.50, C:0.19, G:0.19, T:0.12
Consensus pattern (21 bp):
AACAGAAACTCGTAAGAGCTG
Found at i:7492753 original size:20 final size:19
Alignment explanation
Indices: 7492717--7492758 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
7492707 CAACTAAACT
7492717 AAAAAATATAAATATTTACA
1 AAAAAATATAAATATTTA-A
*
7492737 AAAAAATAGTCAA-ATTTAA
1 AAAAAATA-TAAATATTTAA
7492756 AAA
1 AAA
7492759 TTATAACGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 13 0.65
21 3 0.15
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (19 bp):
AAAAAATATAAATATTTAA
Found at i:7493537 original size:16 final size:16
Alignment explanation
Indices: 7493516--7493546 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7493506 AAGGTGTTGG
7493516 CACCGATTGACGCTAA
1 CACCGATTGACGCTAA
7493532 CACCGATTGACGCTA
1 CACCGATTGACGCTA
7493547 TAAGTTTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.19
Consensus pattern (16 bp):
CACCGATTGACGCTAA
Found at i:7506382 original size:19 final size:21
Alignment explanation
Indices: 7506344--7506383 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
7506334 TCTATTTTTT
7506344 ATAAATTGAAAAACAAATTTG
1 ATAAATTGAAAAACAAATTTG
*
7506365 ATAAA-TGAAATA-AAATTTG
1 ATAAATTGAAAAACAAATTTG
7506384 TTTTCGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 6 0.33
21 5 0.28
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (21 bp):
ATAAATTGAAAAACAAATTTG
Found at i:7514902 original size:72 final size:72
Alignment explanation
Indices: 7514781--7514914 Score: 191
Period size: 72 Copynumber: 1.9 Consensus size: 72
7514771 TGAAAAATGA
*
7514781 ATCATGCCCAATAAGTTAGGACACGATCTTTTCTTAATTCCTGAGATCGTTTAA-AACTTGAGAA
1 ATCATGCCCAATAAGTTAGGACACGATCTCTTCTTAATTCCTGAGATCGTTTAATAA-TTGAGAA
7514845 AAAAGGGG
65 AAAAGGGG
* * * *
7514853 ATCATGCCCAGTAAGTTAGGACATGATCTCTTCTTGATT-CTCGATATCGTTTAATAATTGAG
1 ATCATGCCCAATAAGTTAGGACACGATCTCTTCTTAATTCCT-GAGATCGTTTAATAATTGAG
7514915 TTTGAAAAGA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
71 2 0.04
72 51 0.93
73 2 0.04
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (72 bp):
ATCATGCCCAATAAGTTAGGACACGATCTCTTCTTAATTCCTGAGATCGTTTAATAATTGAGAAA
AAAGGGG
Found at i:7515844 original size:72 final size:72
Alignment explanation
Indices: 7515727--7515940 Score: 367
Period size: 72 Copynumber: 3.0 Consensus size: 72
7515717 TCTTTTAAAA
* * * *
7515727 CTCAAGTATTAAACGATATCAGGAATCAAGAAGAGATCATGTCCTAACTTACTGGGCATGATCCC
1 CTCAAGTTTTAAACGATCTCAGGAATTAAGAAAAGATCATGTCCTAACTTACTGGGCATGATCCC
7515792 CTTTTTT
66 CTTTTTT
7515799 CTCAAGTTTTAAACGATCTCAGGAATTAAGAAAAGATCATGTCCTAACTTACTGGGCATGATCCC
1 CTCAAGTTTTAAACGATCTCAGGAATTAAGAAAAGATCATGTCCTAACTTACTGGGCATGATCCC
7515864 CTTTTTT
66 CTTTTTT
* *
7515871 CTCAAGTTTTAAACGATCTCAGGAATTAAGAAAAGATCATGTCCTAACTTATTGGGCATGAT-TC
1 CTCAAGTTTTAAACGATCTCAGGAATTAAGAAAAGATCATGTCCTAACTTACTGGGCATGATCCC
7515935 CTTTTT
66 CTTTTT
7515941 CAAATCCGAG
Statistics
Matches: 136, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
71 7 0.05
72 129 0.95
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (72 bp):
CTCAAGTTTTAAACGATCTCAGGAATTAAGAAAAGATCATGTCCTAACTTACTGGGCATGATCCC
CTTTTTT
Found at i:7519119 original size:101 final size:101
Alignment explanation
Indices: 7518944--7519140 Score: 313
Period size: 101 Copynumber: 2.0 Consensus size: 101
7518934 AAAAAAATAT
** *
7518944 TTCATAAATTAAATAACAATATCATCCCATACTATGCATATTGTTCAACAAATCCAAAATAAATG
1 TTCATAAATTAAATAACAATATCATCCCATACTATGCATATAATTCAACAAATCCAAAATAAATA
*
7519009 ATAAAAATTTAATTTTAAAATATATTTTAAAGTTAC
66 ATAAAAATTTAAATTTAAAATATATTTTAAAGTTAC
* * * * *
7519045 TTCATAAATTAAATAATAATATTATCTCATGCTATGCATATAATTCAAGAAATCCAAAATAAATA
1 TTCATAAATTAAATAACAATATCATCCCATACTATGCATATAATTCAACAAATCCAAAATAAATA
7519110 ATAAAAATTTAAATTTAAAATATATTTTAAA
66 ATAAAAATTTAAATTTAAAATATATTTTAAA
7519141 TTATTTTTTT
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 87 1.00
ACGTcount: A:0.50, C:0.11, G:0.04, T:0.36
Consensus pattern (101 bp):
TTCATAAATTAAATAACAATATCATCCCATACTATGCATATAATTCAACAAATCCAAAATAAATA
ATAAAAATTTAAATTTAAAATATATTTTAAAGTTAC
Found at i:7529202 original size:8 final size:8
Alignment explanation
Indices: 7529189--7529214 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
7529179 AAAATATTAT
7529189 TTTTAAAA
1 TTTTAAAA
7529197 TTTTAAAA
1 TTTTAAAA
7529205 TTTTAAAA
1 TTTTAAAA
7529213 TT
1 TT
7529215 CACTAATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (8 bp):
TTTTAAAA
Found at i:7536010 original size:16 final size:15
Alignment explanation
Indices: 7535989--7536041 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 15
7535979 GCACAATAAC
7535989 ATTTATATTAACTCTA
1 ATTTATATTAA-TCTA
*
7536005 ATTTATATTTAATTTA
1 ATTTATA-TTAATCTA
7536021 ATTGTATATTAATCTA
1 ATT-TATATTAATCTA
7536037 ATTTA
1 ATTTA
7536042 CAAAAATGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
15 2 0.06
16 23 0.70
17 8 0.24
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.55
Consensus pattern (15 bp):
ATTTATATTAATCTA
Found at i:7538196 original size:13 final size:13
Alignment explanation
Indices: 7538180--7538209 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7538170 AGTGCTGCAA
7538180 AAAAATGCTTATG
1 AAAAATGCTTATG
*
7538193 AAAAATGCTTTTG
1 AAAAATGCTTATG
7538206 AAAA
1 AAAA
7538210 GCTTGGTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (13 bp):
AAAAATGCTTATG
Found at i:7542906 original size:17 final size:16
Alignment explanation
Indices: 7542886--7542920 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
7542876 TATTAGCTAT
7542886 TATAATTCGTTTTATAA
1 TATAATTCGTTTT-TAA
*
7542903 TATAATTGGTTTTTAA
1 TATAATTCGTTTTTAA
7542919 TA
1 TA
7542921 ACATGTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.34, C:0.03, G:0.09, T:0.54
Consensus pattern (16 bp):
TATAATTCGTTTTTAA
Found at i:7543014 original size:18 final size:18
Alignment explanation
Indices: 7542987--7543033 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7542977 TTTTTTATGT
*
7542987 TATATTTTATAAAAATTA
1 TATATATTATAAAAATTA
*
7543005 TATATATTATTAAAATTA
1 TATATATTATAAAAATTA
*
7543023 CATTATATTAT
1 TA-TATATTAT
7543034 CTCTAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TATATATTATAAAAATTA
Found at i:7543027 original size:23 final size:23
Alignment explanation
Indices: 7543001--7543062 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 23
7542991 TTTTATAAAA
*
7543001 ATTATATATATTATTAAAATTAC
1 ATTATATATATTATTAAAAATAC
* *
7543024 ATTATAT-TATCTCTAAAAAATAC
1 ATTATATATAT-TATTAAAAATAC
*
7543047 ATTATATTATAGTATT
1 ATTATA-TATATTATT
7543063 TATTATATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
22 3 0.10
23 22 0.73
24 3 0.10
25 2 0.07
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTATATATATTATTAAAAATAC
Found at i:7548544 original size:21 final size:22
Alignment explanation
Indices: 7548520--7548568 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
7548510 AATCATCTTA
7548520 TAAAATATA-ATAA-AATATTTT
1 TAAAATATACATAATAAT-TTTT
*
7548541 TAAAAAATACATAATAATTTTT
1 TAAAATATACATAATAATTTTT
7548563 TAAAAT
1 TAAAAT
7548569 TATTTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 8 0.33
22 13 0.54
23 3 0.12
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
TAAAATATACATAATAATTTTT
Found at i:7550231 original size:108 final size:111
Alignment explanation
Indices: 7550111--7550317 Score: 278
Period size: 112 Copynumber: 1.9 Consensus size: 111
7550101 TTATAGGGAA
** * *
7550111 AAAAATTGGTATAAAGATAAATTTAGTCTTTAATTTGTA-TT-TTTTT-TTATCATTTTAACTTT
1 AAAAATTGGTATAAAGATAAATTTAACCCTTAACTTGTACTTCTTTTTCTTATCATTTTAACTTT
*
7550173 TATT-TTTTATTTAGTTAAATTTGATCATTAATTATTTTTATAAAAG
66 TATTATTAT-TTTAGTTAAATTTGATCATTAATTATTTTTATAAAAG
* * * *
7550219 AAAAATTGGTATAAGGGTAAATTTAACCCTTAACTTGTACTTTCTTTTTCTTTTCATTTTAGCTT
1 AAAAATTGGTATAAAGATAAATTTAACCCTTAACTTGTAC-TTCTTTTTCTTATCATTTTAACTT
*
7550284 TTATTATTATTTTAGTTAAATTTTATCATTAATT
65 TTATTATTATTTTAGTTAAATTTGATCATTAATT
7550318 TTTATAAAAA
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
108 33 0.39
110 2 0.02
111 5 0.06
112 41 0.49
113 3 0.04
ACGTcount: A:0.32, C:0.07, G:0.08, T:0.54
Consensus pattern (111 bp):
AAAAATTGGTATAAAGATAAATTTAACCCTTAACTTGTACTTCTTTTTCTTATCATTTTAACTTT
TATTATTATTTTAGTTAAATTTGATCATTAATTATTTTTATAAAAG
Found at i:7550702 original size:15 final size:17
Alignment explanation
Indices: 7550671--7550710 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
7550661 ATTTAAAATT
7550671 ATAAAAATATTTAATAA
1 ATAAAAATATTTAATAA
7550688 ATAAAAAT-TTT-ATAA
1 ATAAAAATATTTAATAA
7550703 ATTAAAAA
1 A-TAAAAA
7550711 AAAATGTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 9 0.41
17 8 0.36
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAAAAATATTTAATAA
Found at i:7550711 original size:17 final size:18
Alignment explanation
Indices: 7550656--7550711 Score: 57
Period size: 17 Copynumber: 3.2 Consensus size: 18
7550646 TCACGTCAAC
7550656 AAATAATTTA-AAATTATAA
1 AAAT-ATTTATAAATTA-AA
7550675 AAATATTTAATAAA-T-AA
1 AAATATTT-ATAAATTAAA
7550692 AAAT-TTTATAAATTAAA
1 AAATATTTATAAATTAAA
7550709 AAA
1 AAA
7550712 AAATGTAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
15 5 0.15
16 4 0.12
17 11 0.33
18 4 0.12
19 6 0.18
20 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATATTTATAAATTAAA
Found at i:7557353 original size:14 final size:15
Alignment explanation
Indices: 7557334--7557372 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
7557324 GGTATAGTAA
7557334 GTAATTTATTTTT-T
1 GTAATTTATTTTTAT
7557348 GTAATTATATTTTTAT
1 GTAATT-TATTTTTAT
*
7557364 TTAATTTAT
1 GTAATTTAT
7557373 AACATTTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 6 0.27
15 10 0.45
16 6 0.27
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (15 bp):
GTAATTTATTTTTAT
Found at i:7558759 original size:90 final size:90
Alignment explanation
Indices: 7558603--7559180 Score: 469
Period size: 87 Copynumber: 6.6 Consensus size: 90
7558593 TGCCACAGTG
* * * * * *
7558603 GTCTCTTTTTTCATCTTCTCAGCTGAGCCATTCACTGTTGAA-G-CGATCTCTTTCTTAACCTTC
1 GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTG-TCAAGGCCG-TCTCTTTCTTCATCTTC
7558666 TCAGCCGAGTTATTTACTGTCAAGGCT
64 TCAGCCGAGTTATTTACTGTCAAGGCT
* * * *
7558693 GTTTCTTTCTTCACCTTCTC-GTTCGAGCTCTTTACTGTCAAGGCCGTCTCTTTCTTCATCTTCT
1 GTCTCTTTCTTCATCTTCTCAGCT-GAGCTATTTACTGTCAAGGCCGTCTCTTTCTTCATCTTCT
**
7558757 CAGCCGAGCCATTTACTGT--A-GCT
65 CAGCCGAGTTATTTACTGTCAAGGCT
* ** * *
7558780 GTCTCTTGTC-TCATCTTCTCAGCTGAGCTATTCACTGTCCTGGCCATCTCTTTGTTCATCTTCT
1 GTCTCTT-TCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCCGTCTCTTTCTTCATCTTCT
* *
7558844 CAGCTGAGTTATTTATTGTCAAGGCT
65 CAGCCGAGTTATTTACTGTCAAGGCT
* * * *
7558870 GTCTCTTTGTTCATCTTCTCAGCTGAGATATTTACTGTCAAGGCTGTCTCTTTCTTCATCTTTTC
1 GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCCGTCTCTTTCTTCATCTTCTC
* *** *
7558935 AGCTGAACCATTTTCTG-C-A-GCT
66 AGCCGAGTTATTTACTGTCAAGGCT
* * *
7558957 GTCTCTTGTC-TCATCTTCTCAGCTGAGCTATTTAATG---A---TGTTTCTTTCTTCATCTTCT
1 GTCTCTT-TCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCCGTCTCTTTCTTCATCTTCT
* * *
7559015 CAGCTGAGTTATTTATTTTCAAGGCT
65 CAGCCGAGTTATTTACTGTCAAGGCT
* * * * ** *
7559041 GTCTCTTTGTTCATCTTCTCCGCTGAGCTCTTTA-T-TGAA-GTTGTCTCTCTT-TTCATCTCCT
1 GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCCGTCTCT-TTCTTCATCTTCT
** * * *
7559102 CAGTGGAGCTATTTACTGTCATGGCC
65 CAGCCGAGTTATTTACTGTCAAGGCT
* * * * * * * *
7559128 ATCTCGTTCTTCATCTTCTCGGCCGAGCTATTCACTGCCGAGGCCATCTCTTT
1 GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCCGTCTCTTT
7559181 GTTTGCCTTC
Statistics
Matches: 390, Mismatches: 75, Indels: 47
0.76 0.15 0.09
Matches are distributed among these distances:
81 30 0.08
82 1 0.00
83 3 0.01
84 33 0.08
85 1 0.00
87 163 0.42
88 10 0.03
89 11 0.03
90 136 0.35
91 2 0.01
ACGTcount: A:0.15, C:0.27, G:0.16, T:0.42
Consensus pattern (90 bp):
GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCCGTCTCTTTCTTCATCTTCTC
AGCCGAGTTATTTACTGTCAAGGCT
Found at i:7558906 original size:177 final size:174
Alignment explanation
Indices: 7558603--7559180 Score: 616
Period size: 177 Copynumber: 3.3 Consensus size: 174
7558593 TGCCACAGTG
* * * * * * *
7558603 GTCTCTTTTTTCATCTTCTCAGCTGAGCCATTCACTGTTGAAGCGATCTCTTTCTTAACCTTCTC
1 GTCTCTTGTCTCATCTTCTCAGCTGAGCTATTCACTGCTG--GCCATCTCTTTCTTCATCTTCTC
* * * * * *
7558668 AGCCGAGTTATTTACTGTCAAGGCTGTTTCTTTCTTCACCTTCTCGTTCGAGCTCTTTACTGTCA
64 AGCTGAGTTATTTATTGTCAAGGCTGTCTCTTTGTTCATCTTCTCGCT-GAGCTCTTTACTGTCA
*
7558733 AGGCCGTCTCTTTCTTCATCTTCTCAGCCGAGCCATTTACTGTAGCT
128 AGGCTGTCTCTTTCTTCATCTTCTCAGCCGAGCCATTTACTGTAGCT
*
7558780 GTCTCTTGTCTCATCTTCTCAGCTGAGCTATTCACTGTCCTGGCCATCTCTTTGTTCATCTTCTC
1 GTCTCTTGTCTCATCTTCTCAGCTGAGCTATTCACTG--CTGGCCATCTCTTTCTTCATCTTCTC
* *
7558845 AGCTGAGTTATTTATTGTCAAGGCTGTCTCTTTGTTCATCTTCTCAGCTGAGATATTTACTGTCA
64 AGCTGAGTTATTTATTGTCAAGGCTGTCTCTTTGTTCATCTTCTC-GCTGAGCTCTTTACTGTCA
* * * * *
7558910 AGGCTGTCTCTTTCTTCATCTTTTCAGCTGAACCATTTTCTGCAGCT
128 AGGCTGTCTCTTTCTTCATCTTCTCAGCCGAGCCATTTACTGTAGCT
* * * *
7558957 GTCTCTTGTCTCATCTTCTCAGCTGAGCTATTTAATGAT-G---TTTCTTTCTTCATCTTCTCAG
1 GTCTCTTGTCTCATCTTCTCAGCTGAGCTATTCACTGCTGGCCATCTCTTTCTTCATCTTCTCAG
* *
7559018 CTGAGTTATTTATTTTCAAGGCTGTCTCTTTGTTCATCTTCTCCGCTGAGCTCTTTA-T-TGAA-
66 CTGAGTTATTTATTGTCAAGGCTGTCTCTTTGTTCATCTTCT-CGCTGAGCTCTTTACTGTCAAG
* * ** * *
7559080 GTTGTCTCTCTT-TTCATCTCCTCAGTGGAGCTATTTACTGTCATGGCC
130 GCTGTCTCT-TTCTTCATCTTCTCAGCCGAGCCATTTACTGT-A--GCT
* * * * *
7559128 ATCTCGT-TCTTCATCTTCTCGGCCGAGCTATTCACTGCCGAGGCCATCTCTTT
1 GTCTCTTGTC-TCATCTTCTCAGCTGAGCTATTCACTG-C-TGGCCATCTCTTT
7559181 GTTTGCCTTC
Statistics
Matches: 336, Mismatches: 50, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
168 29 0.09
169 6 0.02
170 3 0.01
171 101 0.30
172 1 0.00
174 2 0.01
175 1 0.00
177 189 0.56
178 2 0.01
179 2 0.01
ACGTcount: A:0.15, C:0.27, G:0.16, T:0.42
Consensus pattern (174 bp):
GTCTCTTGTCTCATCTTCTCAGCTGAGCTATTCACTGCTGGCCATCTCTTTCTTCATCTTCTCAG
CTGAGTTATTTATTGTCAAGGCTGTCTCTTTGTTCATCTTCTCGCTGAGCTCTTTACTGTCAAGG
CTGTCTCTTTCTTCATCTTCTCAGCCGAGCCATTTACTGTAGCT
Found at i:7559086 original size:126 final size:126
Alignment explanation
Indices: 7558873--7559116 Score: 316
Period size: 126 Copynumber: 1.9 Consensus size: 126
7558863 CAAGGCTGTC
* *
7558873 TCTTTGTTCATCTTCTCAGCTGAGATATTTACTGTCAAGGCTGTCTCTTTCTTCATCTTTTCAGC
1 TCTTTCTTCATCTTCTCAGCTGAGATATTTACTGTCAAGGCTGTCTCTTTCTTCATCTTCTCAGC
* *
7558938 TGAACCATTTTCTGCAGCTGTCTCT-TGTCTCATCTTCTCAGCT-GAGCTATTTAATGATGTT
66 TGAACCATTTTCTGAAGCTGTCTCTCT-TCTCATCTCCTCAG-TGGAGCTATTTAATGATGTT
* * * * *
7558999 TCTTTCTTCATCTTCTCAGCTGAGTTATTTATTTTCAAGGCTGTCTCTTTGTTCATCTTCTCCGC
1 TCTTTCTTCATCTTCTCAGCTGAGATATTTACTGTCAAGGCTGTCTCTTTCTTCATCTTCTCAGC
* * *
7559064 TGAGCTC-TTTAT-TGAAGTTGTCTCTCTTTTCATCTCCTCAGTGGAGCTATTTA
66 TGAAC-CATTT-TCTGAAGCTGTCTCTCTTCTCATCTCCTCAGTGGAGCTATTTA
7559117 CTGTCATGGC
Statistics
Matches: 102, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
125 1 0.01
126 98 0.96
127 3 0.03
ACGTcount: A:0.16, C:0.24, G:0.15, T:0.46
Consensus pattern (126 bp):
TCTTTCTTCATCTTCTCAGCTGAGATATTTACTGTCAAGGCTGTCTCTTTCTTCATCTTCTCAGC
TGAACCATTTTCTGAAGCTGTCTCTCTTCTCATCTCCTCAGTGGAGCTATTTAATGATGTT
Found at i:7559156 original size:45 final size:45
Alignment explanation
Indices: 7558603--7559164 Score: 484
Period size: 45 Copynumber: 12.8 Consensus size: 45
7558593 TGCCACAGTG
* * * *
7558603 GTCTCTTTTTTCATCTTCTCAGCTGAGCCATTCACTGTTGAA-GC-
1 GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTG-TCAAGGCT
* * * *
7558647 GATCTCTTTCTTAACCTTCTCAGCCGAGTTATTTACTGTCAAGGCT
1 G-TCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCT
* * * * *
7558693 GTTTCTTTCTTCACCTTCTC-GTTCGAGCTCTTTACTGTCAAGGCC
1 GTCTCTTTCTTCATCTTCTCAGCT-GAGCTATTTACTGTCAAGGCT
* *
7558738 GTCTCTTTCTTCATCTTCTCAGCCGAGCCATTTACTGT--A-GCT
1 GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCT
* ** *
7558780 GTCTCTTGTC-TCATCTTCTCAGCTGAGCTATTCACTGTCCTGGCC
1 GTCTCTT-TCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCT
* * * *
7558825 ATCTCTTTGTTCATCTTCTCAGCTGAGTTATTTATTGTCAAGGCT
1 GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCT
* *
7558870 GTCTCTTTGTTCATCTTCTCAGCTGAGATATTTACTGTCAAGGCT
1 GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCT
* * * *
7558915 GTCTCTTTCTTCATCTTTTCAGCTGAACCATTTTCTG-C-A-GCT
1 GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCT
*
7558957 GTCTCTTGTC-TCATCTTCTCAGCTGAGCTATTTAATG---A---T
1 GTCTCTT-TCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCT
* * * *
7558996 GTTTCTTTCTTCATCTTCTCAGCTGAGTTATTTATTTTCAAGGCT
1 GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCT
* * * * *
7559041 GTCTCTTTGTTCATCTTCTCCGCTGAGCTCTTTA-T-TGAA-GTT
1 GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCT
* * *
7559083 GTCTCTCTT-TTCATCTCCTCAG-TGGAGCTATTTACTGTCATGGCC
1 GTCTCT-TTCTTCATCTTCTCAGCT-GAGCTATTTACTGTCAAGGCT
* * * * *
7559128 ATCTCGTTCTTCATCTTCTCGGCCGAGCTATTCACTG
1 GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTG
7559165 CCGAGGCCAT
Statistics
Matches: 420, Mismatches: 73, Indels: 49
0.77 0.13 0.09
Matches are distributed among these distances:
38 2 0.00
39 31 0.07
41 2 0.00
42 95 0.23
43 12 0.03
44 12 0.03
45 264 0.63
46 2 0.00
ACGTcount: A:0.15, C:0.27, G:0.16, T:0.43
Consensus pattern (45 bp):
GTCTCTTTCTTCATCTTCTCAGCTGAGCTATTTACTGTCAAGGCT
Found at i:7564138 original size:19 final size:18
Alignment explanation
Indices: 7564114--7564209 Score: 72
Period size: 19 Copynumber: 5.2 Consensus size: 18
7564104 TAACAAAAAT
7564114 TATTATAAAATAATATACA
1 TATTATAAAATAATATA-A
*
7564133 TATTATAAAATTATTATAA
1 TATTATAAAA-TAATATAA
* *
7564152 TATATTTAACAA-AA-A-AT
1 TAT-TATAA-AATAATATAA
*
7564169 TATTATAAAATAATATACC
1 TATTATAAAATAATATA-A
*
7564188 TATTATAAAATTATTATAA
1 TATTATAAAA-TAATATAA
7564207 TAT
1 TAT
7564210 ATTTATTTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
15 2 0.03
16 6 0.10
17 5 0.08
18 2 0.03
19 28 0.46
20 16 0.26
21 2 0.03
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (18 bp):
TATTATAAAATAATATAA
Found at i:7564145 original size:30 final size:30
Alignment explanation
Indices: 7564109--7564206 Score: 125
Period size: 30 Copynumber: 3.4 Consensus size: 30
7564099 ATTTATAACA
7564109 AAAATTATTATAAAATAATATACATATTAT
1 AAAATTATTATAAAATAATATACATATTAT
* * *
7564139 AAAATTATTATAATAT-ATTTA-ACA--A-
1 AAAATTATTATAAAATAATATACATATTAT
*
7564164 AAAATTATTATAAAATAATATACCTATTAT
1 AAAATTATTATAAAATAATATACATATTAT
7564194 AAAATTATTATAA
1 AAAATTATTATAA
7564207 TATATTTATT
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
25 15 0.27
26 5 0.09
27 1 0.02
28 2 0.04
29 5 0.09
30 28 0.50
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (30 bp):
AAAATTATTATAAAATAATATACATATTAT
Found at i:7564149 original size:11 final size:11
Alignment explanation
Indices: 7564109--7564206 Score: 55
Period size: 11 Copynumber: 9.2 Consensus size: 11
7564099 ATTTATAACA
7564109 AAAATTATTAT
1 AAAATTATTAT
*
7564120 AAAA-TAATAT
1 AAAATTATTAT
*
7564130 -ACA-TATTAT
1 AAAATTATTAT
7564139 AAAATTATTAT
1 AAAATTATTAT
** *
7564150 AATATATTTAACAA
1 AA-A-A-TTATTAT
7564164 AAAATTATTAT
1 AAAATTATTAT
7564175 AAAA-TA--AT
1 AAAATTATTAT
* **
7564183 ATACCTATTAT
1 AAAATTATTAT
7564194 AAAATTATTAT
1 AAAATTATTAT
7564205 AA
1 AA
7564207 TATATTTATT
Statistics
Matches: 64, Mismatches: 15, Indels: 16
0.67 0.16 0.17
Matches are distributed among these distances:
8 4 0.06
9 9 0.14
10 9 0.14
11 32 0.50
12 2 0.03
13 2 0.03
14 6 0.09
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (11 bp):
AAAATTATTAT
Found at i:7564172 original size:55 final size:54
Alignment explanation
Indices: 7564104--7564214 Score: 204
Period size: 55 Copynumber: 2.0 Consensus size: 54
7564094 TTGGAATTTA
7564104 TAACAAAAATTATTATAAAATAATATACATATTATAAAATTATTATAATATATT
1 TAACAAAAATTATTATAAAATAATATACATATTATAAAATTATTATAATATATT
*
7564158 TAACAAAAAATTATTATAAAATAATATACCTATTATAAAATTATTATAATATATT
1 TAAC-AAAAATTATTATAAAATAATATACATATTATAAAATTATTATAATATATT
7564213 TA
1 TA
7564215 TTTATAAAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
54 4 0.07
55 51 0.93
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (54 bp):
TAACAAAAATTATTATAAAATAATATACATATTATAAAATTATTATAATATATT
Found at i:7564216 original size:25 final size:25
Alignment explanation
Indices: 7564123--7564223 Score: 94
Period size: 25 Copynumber: 3.8 Consensus size: 25
7564113 TTATTATAAA
**
7564123 ATAATATACATATTATAAAATTATT
1 ATAATATATTTATTATAAAATTATT
** *
7564148 ATAATATATTTAACAAAAAATTATT
1 ATAATATATTTATTATAAAATTATT
*
7564173 ATAAAATAATATACCTATTATAAAATTATT
1 AT--AAT-ATAT--TTATTATAAAATTATT
7564203 ATAATATATTTATTTATAAAA
1 ATAATATATTTA-TTATAAAA
7564224 AATTATGGCC
Statistics
Matches: 60, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
25 24 0.40
26 8 0.13
27 7 0.12
28 7 0.12
30 14 0.23
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (25 bp):
ATAATATATTTATTATAAAATTATT
Found at i:7564229 original size:14 final size:13
Alignment explanation
Indices: 7564108--7564229 Score: 57
Period size: 14 Copynumber: 8.7 Consensus size: 13
7564098 AATTTATAAC
7564108 AAAAATTATTATA
1 AAAAATTATTATA
*
7564121 AAATAATATACATATTA
1 AAA-AAT-TA-TTA-TA
*
7564138 TAAAATTATTATA
1 AAAAATTATTATA
* * * *
7564151 ATATATT-TAACA
1 AAAAATTATTATA
7564163 AAAAATTATTATA
1 AAAAATTATTATA
*
7564176 AAATAATATACCTATTA
1 AAA-AAT-TA-TTA-TA
*
7564193 TAAAATTATTATA
1 AAAAATTATTATA
* *
7564206 ATATATTTATTTATA
1 A-AAAATTA-TTATA
7564221 AAAAATTAT
1 AAAAATTAT
7564230 GGCCAAATAT
Statistics
Matches: 78, Mismatches: 20, Indels: 22
0.65 0.17 0.18
Matches are distributed among these distances:
12 8 0.10
13 18 0.23
14 20 0.26
15 14 0.18
16 10 0.13
17 8 0.10
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (13 bp):
AAAAATTATTATA
Found at i:7564316 original size:22 final size:20
Alignment explanation
Indices: 7564267--7564316 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 20
7564257 ATGTCCATAT
7564267 TATATATTATAAAAATAATA
1 TATATATTATAAAAATAATA
*
7564287 TACT-TATTCATAAAAAATATTA
1 TA-TATATT-AT-AAAAATAATA
7564309 TATATATT
1 TATATATT
7564317 TATCATAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
20 6 0.24
21 4 0.16
22 15 0.60
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (20 bp):
TATATATTATAAAAATAATA
Found at i:7571006 original size:12 final size:12
Alignment explanation
Indices: 7570991--7571041 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
7570981 AGATGACCAC
*
7570991 GAAGGTGAAGGT
1 GAAGATGAAGGT
*
7571003 GAAGATGAAGCT
1 GAAGATGAAGGT
* *
7571015 GAAGCTGAAGGC
1 GAAGATGAAGGT
*
7571027 GAAGATGAAGAT
1 GAAGATGAAGGT
7571039 GAA
1 GAA
7571042 AGAGATGATA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.41, C:0.06, G:0.39, T:0.14
Consensus pattern (12 bp):
GAAGATGAAGGT
Found at i:7571030 original size:18 final size:18
Alignment explanation
Indices: 7570979--7571041 Score: 54
Period size: 18 Copynumber: 3.5 Consensus size: 18
7570969 AAGTTCGCAA
** *
7570979 GAAGATGACCACGAAGGT
1 GAAGATGAAGACGAAGAT
* * *
7570997 GAAGGTGAAGATGAAGCT
1 GAAGATGAAGACGAAGAT
* *
7571015 GAAGCTGAAGGCGAAGAT
1 GAAGATGAAGACGAAGAT
7571033 GAAGATGAA
1 GAAGATGAA
7571042 AGAGATGATA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.41, C:0.10, G:0.37, T:0.13
Consensus pattern (18 bp):
GAAGATGAAGACGAAGAT
Found at i:7572945 original size:26 final size:26
Alignment explanation
Indices: 7572900--7572957 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
7572890 AATTTTTAAA
*
7572900 TTAAA-AAAAGTAGAGAGACTAATTT
1 TTAAATAAAAGTAGAGAGACTAAATT
*
7572925 CTTAAATAAAAGTAG-GGGACTAAATT
1 -TTAAATAAAAGTAGAGAGACTAAATT
7572951 TTAAATA
1 TTAAATA
7572958 TACGAAGTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 7 0.24
26 14 0.48
27 8 0.28
ACGTcount: A:0.50, C:0.05, G:0.16, T:0.29
Consensus pattern (26 bp):
TTAAATAAAAGTAGAGAGACTAAATT
Found at i:7573504 original size:24 final size:23
Alignment explanation
Indices: 7573467--7573511 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
7573457 ATTAAATGTG
*
7573467 ATGGTTAAATTATTAAAATATTA
1 ATGGTTAAAATATTAAAATATTA
7573490 ATGGTATAAAATATTAAAATAT
1 ATGGT-TAAAATATTAAAATAT
7573512 GTAAAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (23 bp):
ATGGTTAAAATATTAAAATATTA
Found at i:7576544 original size:39 final size:39
Alignment explanation
Indices: 7576497--7576574 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
7576487 CAAAATCGAT
*
7576497 CCTAAAATGGATCCATTTCTTGAAAGGAAATTAAAATAA
1 CCTAAAATGGATCCATTTCTTAAAAGGAAATTAAAATAA
* *
7576536 CCTAAAATGGGTCCATTTTTTAAAAGGAAATTAAAATAA
1 CCTAAAATGGATCCATTTCTTAAAAGGAAATTAAAATAA
7576575 TTTATTGTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.29
Consensus pattern (39 bp):
CCTAAAATGGATCCATTTCTTAAAAGGAAATTAAAATAA
Found at i:7576832 original size:15 final size:16
Alignment explanation
Indices: 7576794--7576837 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
7576784 AAGTTATATT
*
7576794 TAAGATTTTTGCGACTA
1 TAAGATTTTAG-GACTA
*
7576811 TATGATTTTAGGA-TA
1 TAAGATTTTAGGACTA
7576826 TAAGATTTTAGG
1 TAAGATTTTAGG
7576838 GTTGGATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 13 0.54
16 2 0.08
17 9 0.38
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (16 bp):
TAAGATTTTAGGACTA
Found at i:7580958 original size:15 final size:15
Alignment explanation
Indices: 7580940--7580975 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
7580930 AAAGTTTTAA
7580940 AAAAAT-GACTATTGT
1 AAAAATGGA-TATTGT
7580955 AAAAATGGATATTGT
1 AAAAATGGATATTGT
7580970 AAAAAT
1 AAAAAT
7580976 CTTAATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 18 0.90
16 2 0.10
ACGTcount: A:0.53, C:0.03, G:0.14, T:0.31
Consensus pattern (15 bp):
AAAAATGGATATTGT
Found at i:7589676 original size:19 final size:18
Alignment explanation
Indices: 7589654--7589710 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
7589644 TAACAAATAA
7589654 TAAATTATTTAATTTAATT
1 TAAATTATTT-ATTTAATT
*
7589673 TAAATGA-TT-TTT--TT
1 TAAATTATTTATTTAATT
7589687 TAAATTATTTATTTAATT
1 TAAATTATTTATTTAATT
*
7589705 AAAATT
1 TAAATT
7589711 GTATCTAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
14 8 0.26
15 2 0.06
16 6 0.19
18 9 0.29
19 6 0.19
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
TAAATTATTTATTTAATT
Found at i:7590730 original size:30 final size:29
Alignment explanation
Indices: 7590662--7590731 Score: 70
Period size: 31 Copynumber: 2.4 Consensus size: 29
7590652 GTACTTTGAT
*
7590662 CTCTT-AAAATGAAAAAAAATCTTTTAAT
1 CTCTTAAAAATGAAAAAAAATCTTTTAAC
* ** *
7590690 CACTTAAAAAATGATAAAATTATGTTTTAAC
1 CTCTT-AAAAATGA-AAAAAAATCTTTTAAC
7590721 CTCTTAAAAAT
1 CTCTTAAAAAT
7590732 TTATAATTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
28 4 0.12
30 13 0.39
31 16 0.48
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.36
Consensus pattern (29 bp):
CTCTTAAAAATGAAAAAAAATCTTTTAAC
Found at i:7593001 original size:27 final size:27
Alignment explanation
Indices: 7592971--7593026 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
7592961 GTTTGTTAAC
7592971 CGGATTGGATCAAGTTTAACTTAGGTA
1 CGGATTGGATCAAGTTTAACTTAGGTA
*
7592998 CGGATTGGATCAGGTTTAACTTAGGTA
1 CGGATTGGATCAAGTTTAACTTAGGTA
7593025 CG
1 CG
7593027 ATATTATACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.32
Consensus pattern (27 bp):
CGGATTGGATCAAGTTTAACTTAGGTA
Found at i:7594432 original size:49 final size:49
Alignment explanation
Indices: 7594360--7594455 Score: 192
Period size: 49 Copynumber: 2.0 Consensus size: 49
7594350 ATTTACGAAC
7594360 CAAAATATAAATTGCTTTCTTCTCCAATCTTCAACACTAACTCTCAAGG
1 CAAAATATAAATTGCTTTCTTCTCCAATCTTCAACACTAACTCTCAAGG
7594409 CAAAATATAAATTGCTTTCTTCTCCAATCTTCAACACTAACTCTCAA
1 CAAAATATAAATTGCTTTCTTCTCCAATCTTCAACACTAACTCTCAA
7594456 ATCAACTTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.35, C:0.27, G:0.04, T:0.33
Consensus pattern (49 bp):
CAAAATATAAATTGCTTTCTTCTCCAATCTTCAACACTAACTCTCAAGG
Found at i:7601475 original size:21 final size:21
Alignment explanation
Indices: 7601451--7601496 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
7601441 GTTTTTTTGT
7601451 TTGTAGAATTAAAAAATTTTA
1 TTGTAGAATTAAAAAATTTTA
7601472 TTGTAGAATTAAAAAATTTTA
1 TTGTAGAATTAAAAAATTTTA
7601493 TTGT
1 TTGT
7601497 CATAATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (21 bp):
TTGTAGAATTAAAAAATTTTA
Found at i:7621275 original size:20 final size:20
Alignment explanation
Indices: 7621250--7621289 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7621240 AGAAGCATTA
7621250 TAGAACATGGCCTAAGTTAT
1 TAGAACATGGCCTAAGTTAT
7621270 TAGAACATGGCCTAAGTTAT
1 TAGAACATGGCCTAAGTTAT
7621290 GAGGCATGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (20 bp):
TAGAACATGGCCTAAGTTAT
Found at i:7624512 original size:14 final size:13
Alignment explanation
Indices: 7624494--7624538 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
7624484 AAGCACAAGG
* *
7624494 AGAAAAGAGGAAA
1 AGAAAAAAGAAAA
*
7624507 AGGAAAAAGAAAAA
1 AGAAAAAAG-AAAA
7624521 AGAAAAAAGAAAA
1 AGAAAAAAGAAAA
7624534 AGAAA
1 AGAAA
7624539 GATTTATGCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (13 bp):
AGAAAAAAGAAAA
Found at i:7624519 original size:20 final size:20
Alignment explanation
Indices: 7624494--7624538 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
7624484 AAGCACAAGG
* * *
7624494 AGAAAAGAGGAAAAGGAAAA
1 AGAAAAAAGAAAAAAGAAAA
7624514 AGAAAAAAGAAAAAAGAAAA
1 AGAAAAAAGAAAAAAGAAAA
7624534 AGAAA
1 AGAAA
7624539 GATTTATGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (20 bp):
AGAAAAAAGAAAAAAGAAAA
Found at i:7624520 original size:7 final size:7
Alignment explanation
Indices: 7624504--7624538 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
7624494 AGAAAAGAGG
*
7624504 AAAAGGA
1 AAAAGAA
7624511 AAAAGAA
1 AAAAGAA
7624518 AAAAGAA
1 AAAAGAA
7624525 AAAAG-A
1 AAAAGAA
7624531 AAAAGAA
1 AAAAGAA
7624538 A
1 A
7624539 GATTTATGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:7634244 original size:3 final size:3
Alignment explanation
Indices: 7634236--7634283 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
7634226 TAAGGACCAA
* * *
7634236 AAT AAT AAT AA- AAGT AAT AGT AAT AGT AAT AGT AAT AAT AAT AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7634281 AAT
1 AAT
7634284 TCTTTGTGGA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.89
4 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7635349 original size:19 final size:20
Alignment explanation
Indices: 7635325--7635369 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7635315 TGTTTTTAAT
*
7635325 TTAAAAAAATA-TAAAAATA
1 TTAAAAAAACACTAAAAATA
*
7635344 TTAAAAAAACACTAAATATA
1 TTAAAAAAACACTAAAAATA
7635364 TTAAAA
1 TTAAAA
7635370 TAATTATTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (20 bp):
TTAAAAAAACACTAAAAATA
Found at i:7643853 original size:41 final size:41
Alignment explanation
Indices: 7643808--7643889 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
7643798 TTTTACTAGT
7643808 TAGTTTAATCGAATGAATTTGCAAAGAACAATGTTGAATTC
1 TAGTTTAATCGAATGAATTTGCAAAGAACAATGTTGAATTC
7643849 TAGTTTAATCGAATGAATTTGCAAAGAACAATGTTGAATTC
1 TAGTTTAATCGAATGAATTTGCAAAGAACAATGTTGAATTC
7643890 GAGGGGAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.34
Consensus pattern (41 bp):
TAGTTTAATCGAATGAATTTGCAAAGAACAATGTTGAATTC
Found at i:7646344 original size:42 final size:41
Alignment explanation
Indices: 7646285--7646423 Score: 170
Period size: 42 Copynumber: 3.3 Consensus size: 41
7646275 TTATTTCTAC
*
7646285 GTTGCTTCCTTTTTTGTCTGCACCTGGATGTTGTTTTCCCAA
1 GTTGCTTCCTTTTTTGTCTG-ACATGGATGTTGTTTTCCCAA
* * * *
7646327 GTTGCCTCCTTTTTTGTCTGAGCTTGCATGTTGTTTTTCCAA
1 GTTGCTTCCTTTTTTGTCTGA-CATGGATGTTGTTTTCCCAA
* * * *
7646369 GTTGCTTTCTTTTTTGTATAGACATAGATGTTGCTTTCCCAA
1 GTTGCTTCCTTTTTTGTCT-GACATGGATGTTGTTTTCCCAA
7646411 GTTGCTTCCTTTT
1 GTTGCTTCCTTTT
7646424 CTGTATAAAC
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.01
42 79 0.96
43 2 0.02
ACGTcount: A:0.12, C:0.21, G:0.18, T:0.50
Consensus pattern (41 bp):
GTTGCTTCCTTTTTTGTCTGACATGGATGTTGTTTTCCCAA
Found at i:7647397 original size:22 final size:24
Alignment explanation
Indices: 7647357--7647403 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
7647347 ATAACAGTTT
*
7647357 AAGATTTTTCTTTTCATTTATTAA
1 AAGATTTTTCTTATCATTTATTAA
7647381 AAGATTTTTC-TAT-ATTTATTAA
1 AAGATTTTTCTTATCATTTATTAA
7647403 A
1 A
7647404 GCTATGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.45
23 2 0.09
24 10 0.45
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55
Consensus pattern (24 bp):
AAGATTTTTCTTATCATTTATTAA
Found at i:7649054 original size:54 final size:54
Alignment explanation
Indices: 7648970--7649077 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
7648960 AATTTACAAA
7648970 TAACCTCAATTTGCACTATCCATGCATTGTTCCTATAACATAGACATAGTCCAG
1 TAACCTCAATTTGCACTATCCATGCATTGTTCCTATAACATAGACATAGTCCAG
*
7649024 TAACCTCAATTTGCACTATCCATGCGTTGTTCCTATAACATAGACATAGTCCAG
1 TAACCTCAATTTGCACTATCCATGCATTGTTCCTATAACATAGACATAGTCCAG
7649078 GACCCATTGA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (54 bp):
TAACCTCAATTTGCACTATCCATGCATTGTTCCTATAACATAGACATAGTCCAG
Found at i:7655944 original size:17 final size:18
Alignment explanation
Indices: 7655922--7655961 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
7655912 TAATTAAATT
7655922 AATTAAAAATT-TTAAAA
1 AATTAAAAATTATTAAAA
*
7655939 AATTAAAAATTATTTAAA
1 AATTAAAAATTATTAAAA
7655957 AATTA
1 AATTA
7655962 TTTATTAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AATTAAAAATTATTAAAA
Found at i:7655955 original size:11 final size:11
Alignment explanation
Indices: 7655917--7655965 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
7655907 TTTCTTAATT
*
7655917 AAATTAATTAA
1 AAATTATTTAA
7655928 AAA-T-TTTAA
1 AAATTATTTAA
7655937 AAA--A-TTAA
1 AAATTATTTAA
7655945 AAATTATTTAA
1 AAATTATTTAA
7655956 AAATTATTTA
1 AAATTATTTA
7655966 TTAAGTCTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
8 7 0.21
9 7 0.21
10 2 0.06
11 17 0.52
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
AAATTATTTAA
Found at i:7656789 original size:99 final size:96
Alignment explanation
Indices: 7656589--7656878 Score: 375
Period size: 99 Copynumber: 3.0 Consensus size: 96
7656579 AACAACTAGT
* * * **
7656589 TTTATTTGATTTTTCCTTAAAAACTCTAAATACTAAACCCCAATCTAATTTTTTAAATTTTTATA
1 TTTATTTGATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAAATTTATA
* * *
7656654 ATTAATTTACTCAAATAACCTTAAACCTTAA
66 ATTAATTTACTCAAGTAACCCTAAACCCTAA
* *
7656685 TTTATTTGATTTTTCCCTTAAAAACCCTAAACACTAAACCCTAATCTATTTTTTTAAAAAAAATT
1 TTTATTTGATTTTT-CCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTT--AAAAATTT
7656750 ATAATTAATTTACTCAAGTAACCCTAAACCCTAA
63 ATAATTAATTTACTCAAGTAACCCTAAACCCTAA
* * * * * *
7656784 TTTATTTAATTTTTCATTAAAAATCATAAACTCTAAACTCTAATCTAATTTTTT-AAAATTTATA
1 TTTATTTGATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAAATTTATA
* * *
7656848 ATTAATTTAATTAAGAAACCCTAAACCCTAA
66 ATTAATTTACTCAAGTAACCCTAAACCCTAA
7656879 ACCTTTATTT
Statistics
Matches: 170, Mismatches: 21, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
95 37 0.22
96 14 0.08
97 36 0.21
98 34 0.20
99 49 0.29
ACGTcount: A:0.41, C:0.17, G:0.01, T:0.41
Consensus pattern (96 bp):
TTTATTTGATTTTTCCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAAATTTATA
ATTAATTTACTCAAGTAACCCTAAACCCTAA
Found at i:7663792 original size:18 final size:18
Alignment explanation
Indices: 7663771--7663810 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7663761 AAAAAAATGG
* *
7663771 AAATAAATATATATATAT
1 AAATAAAGAAATATATAT
7663789 AAATAAAGAAATATATAT
1 AAATAAAGAAATATATAT
7663807 AAAT
1 AAAT
7663811 TATAAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (18 bp):
AAATAAAGAAATATATAT
Found at i:7681625 original size:21 final size:21
Alignment explanation
Indices: 7681599--7681639 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7681589 AGACGAGCAA
* *
7681599 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
7681620 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
7681640 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:7699756 original size:14 final size:13
Alignment explanation
Indices: 7699737--7699781 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 13
7699727 AAGTTGTAGA
7699737 TTTAATCTTTATAT
1 TTTAAT-TTTATAT
*
7699751 TTTAATTTCATCAT
1 TTTAATTTTAT-AT
7699765 TTTAATTTTTATAT
1 TTTAA-TTTTATAT
7699779 TTT
1 TTT
7699782 TCGAATTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 4 0.15
14 18 0.67
15 5 0.19
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTAATTTTATAT
Found at i:7719230 original size:13 final size:14
Alignment explanation
Indices: 7719204--7719252 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
7719194 ATTAAACTAT
7719204 TTAAAAATATTTAA
1 TTAAAAATATTTAA
* *
7719218 TTAAAATTATTAAA
1 TTAAAAATATTTAA
* *
7719232 ATAATAAATAATTAA
1 TTAA-AAATATTTAA
7719247 TTAAAA
1 TTAAAA
7719253 CATAAATTTA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TTAAAAATATTTAA
Found at i:7728385 original size:18 final size:20
Alignment explanation
Indices: 7728348--7728387 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7728338 ATAATAGTTC
*
7728348 AAAAAATATATTGCTAATAT
1 AAAAAATATATTGATAATAT
7728368 AAAAAATATATT-AT-ATAT
1 AAAAAATATATTGATAATAT
7728386 AA
1 AA
7728388 TATATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 1 0.05
20 12 0.63
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (20 bp):
AAAAAATATATTGATAATAT
Found at i:7737476 original size:13 final size:13
Alignment explanation
Indices: 7737440--7737477 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
7737430 AGTTTGGTAA
7737440 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
7737453 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
7737466 TGCTTTTGAAAA
1 TGCTTTTGAAAA
7737478 ATTTAAGTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:7737802 original size:37 final size:38
Alignment explanation
Indices: 7737761--7737840 Score: 92
Period size: 39 Copynumber: 2.1 Consensus size: 38
7737751 AATAATTAAA
*
7737761 TATTTGTAATT-A-GATATTGACACAATTGTATTATTTT
1 TATTTGTAATTAATGATATTAACACAATTGTATTA-TTT
* * * *
7737798 TATTTTTAATTAATGCTTTTAACACATTTGTATTATTT
1 TATTTGTAATTAATGATATTAACACAATTGTATTATTT
7737836 TATTT
1 TATTT
7737841 TAAAATATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
37 10 0.28
38 9 0.25
39 17 0.47
ACGTcount: A:0.30, C:0.06, G:0.07, T:0.56
Consensus pattern (38 bp):
TATTTGTAATTAATGATATTAACACAATTGTATTATTT
Found at i:7741820 original size:25 final size:26
Alignment explanation
Indices: 7741791--7741849 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
7741781 TTACAAAAAC
7741791 AAAAATAAAAA-TAATTTTTAAAATT-T
1 AAAAA-AAAAAGT-ATTTTTAAAATTAT
*
7741817 AAAAAAAAAAGTATTTTTTAAATTAT
1 AAAAAAAAAAGTATTTTTAAAATTAT
7741843 AAAAAAA
1 AAAAAAA
7741850 TTAAAATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 16 0.53
26 14 0.47
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (26 bp):
AAAAAAAAAAGTATTTTTAAAATTAT
Found at i:7741834 original size:26 final size:25
Alignment explanation
Indices: 7741791--7741849 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 25
7741781 TTACAAAAAC
7741791 AAAAATAAAAATAATTTTTAAAATT-T
1 AAAAA-AAAAATAATTTTT-AAATTAT
*
7741817 AAAAAAAAAAGTATTTTTTAAATTAT
1 AAAAAAAAAA-TAATTTTTAAATTAT
7741843 AAAAAAA
1 AAAAAAA
7741850 TTAAAATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (25 bp):
AAAAAAAAAATAATTTTTAAATTAT
Found at i:7748173 original size:22 final size:22
Alignment explanation
Indices: 7748143--7748185 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7748133 ACTGATTCTC
*
7748143 AAAACCAAAAA-AAGAAGAAGAG
1 AAAAACAAAAAGAA-AAGAAGAG
7748165 AAAAACAAAAAGAAAAGAAGA
1 AAAAACAAAAAGAAAAGAAGA
7748186 AGGGTTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.77, C:0.07, G:0.16, T:0.00
Consensus pattern (22 bp):
AAAAACAAAAAGAAAAGAAGAG
Found at i:7748208 original size:17 final size:17
Alignment explanation
Indices: 7748186--7748218 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7748176 GAAAAGAAGA
*
7748186 AGGGTTTTAGGGTATTG
1 AGGGTTTAAGGGTATTG
7748203 AGGGTTTAAGGGTATT
1 AGGGTTTAAGGGTATT
7748219 TTGCGCCATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.39, T:0.39
Consensus pattern (17 bp):
AGGGTTTAAGGGTATTG
Found at i:7748679 original size:18 final size:18
Alignment explanation
Indices: 7748656--7748690 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7748646 ATTGTTCCTA
*
7748656 TTTTAATTAGTTTAATTT
1 TTTTAATTAATTTAATTT
7748674 TTTTAATTAATTTAATT
1 TTTTAATTAATTTAATT
7748691 ACTCTAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (18 bp):
TTTTAATTAATTTAATTT
Found at i:7753383 original size:9 final size:9
Alignment explanation
Indices: 7753369--7753402 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
7753359 AAGAGAAAGG
7753369 AACAGCAGC
1 AACAGCAGC
*
7753378 AACAGCGGC
1 AACAGCAGC
7753387 AACAGCAGC
1 AACAGCAGC
*
7753396 AGCAGCA
1 AACAGCA
7753403 AGAGGAGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.41, C:0.32, G:0.26, T:0.00
Consensus pattern (9 bp):
AACAGCAGC
Found at i:7762003 original size:16 final size:16
Alignment explanation
Indices: 7761961--7762004 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
7761951 AAAAATATCA
7761961 TTTTATCATTTTAATAT
1 TTTTAT-ATTTTAATAT
*
7761978 TTTAATATTTT-ATAT
1 TTTTATATTTTAATAT
7761993 TTTTATAATTTT
1 TTTTAT-ATTTT
7762005 TGAATGATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 9 0.38
16 10 0.42
17 5 0.21
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTATATTTTAATAT
Found at i:7766450 original size:22 final size:22
Alignment explanation
Indices: 7766423--7766468 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
7766413 TTTGTTAAAG
*
7766423 AAAAACATAAAAGAACAAGTTA
1 AAAAACATAAAAGAACAAATTA
*
7766445 AAAAACATAAAAGAATAAATTA
1 AAAAACATAAAAGAACAAATTA
7766467 AA
1 AA
7766469 TTGCTCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.72, C:0.07, G:0.07, T:0.15
Consensus pattern (22 bp):
AAAAACATAAAAGAACAAATTA
Found at i:7777550 original size:31 final size:30
Alignment explanation
Indices: 7777496--7777563 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 30
7777486 AAGTTTAGAG
* * * *
7777496 ACCAAAATAGACTTGATTGCCAAGTTCAAA
1 ACCAAAATAGACATAACTACCAAGTTCAAA
*
7777526 TACCAAAATAGACATAACTACCAAGTTCAGA
1 -ACCAAAATAGACATAACTACCAAGTTCAAA
7777557 ACCAAAA
1 ACCAAAA
7777564 GTTTACATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 7 0.22
31 25 0.78
ACGTcount: A:0.49, C:0.22, G:0.10, T:0.19
Consensus pattern (30 bp):
ACCAAAATAGACATAACTACCAAGTTCAAA
Found at i:7787719 original size:19 final size:21
Alignment explanation
Indices: 7787697--7787745 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
7787687 AATTACTTAA
7787697 TTAAAATT-TTTTG-AATAAT
1 TTAAAATTATTTTGTAATAAT
**
7787716 TTAATAATTATTTTGTAATTTT
1 TTAA-AATTATTTTGTAATAAT
7787738 TTAAAATT
1 TTAAAATT
7787746 GAATGACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 4 0.16
20 4 0.16
21 9 0.36
22 8 0.32
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (21 bp):
TTAAAATTATTTTGTAATAAT
Found at i:7788295 original size:18 final size:20
Alignment explanation
Indices: 7788260--7788297 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7788250 TATAATATTT
*
7788260 TATATTATGTTATCTTTATA
1 TATATTATGTTATATTTATA
7788280 TATATTATG-TA-ATTTATA
1 TATATTATGTTATATTTATA
7788298 ACAGATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
20 9 0.53
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (20 bp):
TATATTATGTTATATTTATA
Found at i:7791106 original size:16 final size:16
Alignment explanation
Indices: 7791087--7791117 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7791077 AATTTTTACA
7791087 GTAAAAAATTGATGAT
1 GTAAAAAATTGATGAT
7791103 GTAAAAAATTGATGA
1 GTAAAAAATTGATGA
7791118 CGTAGCATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (16 bp):
GTAAAAAATTGATGAT
Found at i:7792292 original size:12 final size:13
Alignment explanation
Indices: 7792249--7792295 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
7792239 AGTAAATTCT
*
7792249 ATTTTATTTAGAAA
1 ATTTTATTTA-ATA
*
7792263 ATTTTATTTAATT
1 ATTTTATTTAATA
*
7792276 CTTTT-TTTAATA
1 ATTTTATTTAATA
7792288 ATTTTATT
1 ATTTTATT
7792296 ATAGGTTTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
12 10 0.37
13 7 0.26
14 10 0.37
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (13 bp):
ATTTTATTTAATA
Found at i:7798516 original size:19 final size:20
Alignment explanation
Indices: 7798486--7798523 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
7798476 TAATTTCATC
7798486 TTGAATTTTAATATTTTTAT
1 TTGAATTTTAATATTTTTAT
*
7798506 TTGAA-TTTAATTTTTTTA
1 TTGAATTTTAATATTTTTA
7798524 AAATACTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (20 bp):
TTGAATTTTAATATTTTTAT
Found at i:7810926 original size:50 final size:46
Alignment explanation
Indices: 7810872--7810978 Score: 153
Period size: 45 Copynumber: 2.3 Consensus size: 46
7810862 TTCTTTTCTT
*
7810872 TTAGAATAAGGTTTTTTAAACTTTATTAAACTCCATTTATTTGATATTGA
1 TTAGAATAAGG---TTTAAA-TTTATTAAACTCCATCTATTTGATATTGA
*
7810922 TTAGAATAAGG-TTGAATTTATTAAACTCCATCTATTTGATATTGA
1 TTAGAATAAGGTTTAAATTTATTAAACTCCATCTATTTGATATTGA
7810967 TTAGAATAAGGT
1 TTAGAATAAGGT
7810979 GTTTCAATCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
45 39 0.72
46 4 0.07
50 11 0.20
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.44
Consensus pattern (46 bp):
TTAGAATAAGGTTTAAATTTATTAAACTCCATCTATTTGATATTGA
Found at i:7810958 original size:45 final size:45
Alignment explanation
Indices: 7810893--7810978 Score: 163
Period size: 45 Copynumber: 1.9 Consensus size: 45
7810883 TTTTTTAAAC
*
7810893 TTTATTAAACTCCATTTATTTGATATTGATTAGAATAAGGTTGAA
1 TTTATTAAACTCCATCTATTTGATATTGATTAGAATAAGGTTGAA
7810938 TTTATTAAACTCCATCTATTTGATATTGATTAGAATAAGGT
1 TTTATTAAACTCCATCTATTTGATATTGATTAGAATAAGGT
7810979 GTTTCAATCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.35, C:0.08, G:0.13, T:0.44
Consensus pattern (45 bp):
TTTATTAAACTCCATCTATTTGATATTGATTAGAATAAGGTTGAA
Found at i:7814485 original size:18 final size:18
Alignment explanation
Indices: 7814464--7814502 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
7814454 GTGGTGGTGT
7814464 TGGAAATGGAGGTGCTGG
1 TGGAAATGGAGGTGCTGG
* *
7814482 TGGACATGGAGGTGGTGG
1 TGGAAATGGAGGTGCTGG
7814500 TGG
1 TGG
7814503 TAGTGGTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.05, G:0.54, T:0.23
Consensus pattern (18 bp):
TGGAAATGGAGGTGCTGG
Found at i:7814503 original size:21 final size:21
Alignment explanation
Indices: 7814443--7814503 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
7814433 GTGTAAGTGC
* *
7814443 TGGACAAGGAGGTGGTGGTGT
1 TGGACATGGAGGTGGTGGTGG
* *
7814464 TGGAAATGGA---GGTGCTGG
1 TGGACATGGAGGTGGTGGTGG
7814482 TGGACATGGAGGTGGTGGTGG
1 TGGACATGGAGGTGGTGGTGG
7814503 T
1 T
7814504 AGTGGTAGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
18 15 0.48
21 16 0.52
ACGTcount: A:0.18, C:0.05, G:0.52, T:0.25
Consensus pattern (21 bp):
TGGACATGGAGGTGGTGGTGG
Found at i:7814680 original size:6 final size:6
Alignment explanation
Indices: 7814671--7814698 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7814661 CTGGAGGATA
7814671 TGGAAG TGGAAG TGGAAG TGGAAG TGGA
1 TGGAAG TGGAAG TGGAAG TGGAAG TGGA
7814699 GAAGGTGGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.50, T:0.18
Consensus pattern (6 bp):
TGGAAG
Found at i:7814809 original size:6 final size:6
Alignment explanation
Indices: 7814800--7814832 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
7814790 CTGGAGGATT
7814800 TGGAAG TGGAAG TGGAAG TGGAAG TGGAAG TGG
1 TGGAAG TGGAAG TGGAAG TGGAAG TGGAAG TGG
7814833 TGAAGGTGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.52, T:0.18
Consensus pattern (6 bp):
TGGAAG
Found at i:7814847 original size:123 final size:125
Alignment explanation
Indices: 7814657--7814933 Score: 411
Period size: 123 Copynumber: 2.2 Consensus size: 125
7814647 TAGTGCTGGT
*
7814657 GGAGCTGGAGGATATGGAAGTGGAAGTGGAAGTGGAAGTGGAGAAGGTGGTGGAGCTGGTAGCGG
1 GGAGCTGGAGGATATGGAAGTGGAAGTGGAAGTGGAAGTGGAGAAGGTGGTGAAGCTGGTA--GG
7814722 AGCTGGTAATGGTGGTGGTGGACATGGAGGTGGTGGAGGTGGTGGTA-GTGGTGGTGGTGGAGGC
64 AGCTGGTAA--G-GGTGGTGGACATGGAGGTGGTGGAGGTGGTGGTAGGTGGTGGTGGTGGAGGC
* *
7814786 GGAGCTGGAGGATTTGGAAGTGGAAGTGGAAGTGGAAGT-G-GAA-GTGGTGAAGGTGGT-GGAG
1 GGAGCTGGAGGATATGGAAGTGGAAGTGGAAGTGGAAGTGGAGAAGGTGGTGAAGCTGGTAGGAG
* *
7814847 CTGGTAAGGGTGGTGGACGTGGAGGTGGTGGAGGTGGTGGTAGCGGTGGTGGTGGTGGAGGT
66 CTGGTAAGGGTGGTGGACATGGAGGTGGTGGAGGTGGTGGTA--GGTGGTGGTGGTGGAGGC
7814909 GGAGCTGGAGGATATGGAAGTGGAA
1 GGAGCTGGAGGATATGGAAGTGGAA
7814934 NNNNNNNNNN
Statistics
Matches: 139, Mismatches: 6, Indels: 12
0.89 0.04 0.08
Matches are distributed among these distances:
120 33 0.24
121 1 0.01
123 51 0.37
126 12 0.09
127 3 0.02
128 1 0.01
129 38 0.27
ACGTcount: A:0.21, C:0.04, G:0.55, T:0.21
Consensus pattern (125 bp):
GGAGCTGGAGGATATGGAAGTGGAAGTGGAAGTGGAAGTGGAGAAGGTGGTGAAGCTGGTAGGAG
CTGGTAAGGGTGGTGGACATGGAGGTGGTGGAGGTGGTGGTAGGTGGTGGTGGTGGAGGC
Found at i:7814877 original size:9 final size:9
Alignment explanation
Indices: 7814865--7814910 Score: 58
Period size: 9 Copynumber: 5.1 Consensus size: 9
7814855 GGTGGTGGAC
7814865 GTGGAGGTG
1 GTGGAGGTG
7814874 GTGGAGGTG
1 GTGGAGGTG
*
7814883 GTGGTA-GCG
1 GTGG-AGGTG
*
7814892 GTGGTGGTG
1 GTGGAGGTG
7814901 GTGGAGGTG
1 GTGGAGGTG
7814910 G
1 G
7814911 AGCTGGAGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 30 0.97
10 1 0.03
ACGTcount: A:0.09, C:0.02, G:0.65, T:0.24
Consensus pattern (9 bp):
GTGGAGGTG
Found at i:7814886 original size:18 final size:18
Alignment explanation
Indices: 7814823--7814910 Score: 60
Period size: 18 Copynumber: 5.1 Consensus size: 18
7814813 GGAAGTGGAA
* *
7814823 GTGGAAGTGGTGAAGGTG
1 GTGGAGGTGGTGGAGGTG
* *
7814841 GTGGAGCTGGT-AAGGGTG
1 GTGGAGGTGGTGGA-GGTG
*
7814859 GTGGA---CGTGGAGGTG
1 GTGGAGGTGGTGGAGGTG
*
7814874 GTGGAGGTGGTGGTA-GCG
1 GTGGAGGTGGTGG-AGGTG
*
7814892 GTGGTGGTGGTGGAGGTG
1 GTGGAGGTGGTGGAGGTG
7814910 G
1 G
7814911 AGCTGGAGGA
Statistics
Matches: 55, Mismatches: 8, Indels: 14
0.71 0.10 0.18
Matches are distributed among these distances:
15 11 0.20
16 1 0.02
17 3 0.05
18 39 0.71
19 1 0.02
ACGTcount: A:0.14, C:0.03, G:0.60, T:0.23
Consensus pattern (18 bp):
GTGGAGGTGGTGGAGGTG
Found at i:7831041 original size:31 final size:32
Alignment explanation
Indices: 7831006--7831067 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
7830996 TTTTAGAGGT
*
7831006 TGATTAATACAAATCCTT-AAAAAATTAGGAC
1 TGATTAATACAAACCCTTGAAAAAATTAGGAC
* *
7831037 TGATTAGTACAAACCCTTGAAGAAATTAGGA
1 TGATTAATACAAACCCTTGAAAAAATTAGGA
7831068 TTTATTAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (32 bp):
TGATTAATACAAACCCTTGAAAAAATTAGGAC
Found at i:7832113 original size:2 final size:2
Alignment explanation
Indices: 7832106--7832159 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
7832096 ATTTTCACCC
7832106 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7832148 CT CT CT CT CT CT
1 CT CT CT CT CT CT
7832160 ATAGCTGCTC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7838289 original size:14 final size:14
Alignment explanation
Indices: 7838270--7838309 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
7838260 TTGATTGCCA
7838270 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
7838284 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
7838298 GGAAAATGTTTT
1 GTAAAATGTTTT
7838310 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:7838318 original size:20 final size:20
Alignment explanation
Indices: 7838293--7838332 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7838283 CGTAAAATGA
*
7838293 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
7838313 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
7838333 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:7838322 original size:34 final size:35
Alignment explanation
Indices: 7838278--7838344 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
7838268 CAGTAAAATG
*
7838278 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
7838312 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
7838345 CTAGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:7841167 original size:18 final size:18
Alignment explanation
Indices: 7841146--7841196 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
7841136 AGGAATGAAG
7841146 GAAGGGAGAAGAATGGAT
1 GAAGGGAGAAGAATGGAT
*** *
7841164 GAAGGGAGCTTACTGGAT
1 GAAGGGAGAAGAATGGAT
7841182 GAAGGGAGAAGAATG
1 GAAGGGAGAAGAATG
7841197 CCTGAGAGCT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.39, C:0.04, G:0.43, T:0.14
Consensus pattern (18 bp):
GAAGGGAGAAGAATGGAT
Found at i:7849115 original size:68 final size:68
Alignment explanation
Indices: 7849032--7849170 Score: 260
Period size: 68 Copynumber: 2.0 Consensus size: 68
7849022 ATAAACACAA
*
7849032 AGCAGAACTGGTATTATTTATAGATGAAATTTAAATGAAATGAAAGACAAAAGGCAAATGAATAA
1 AGCAGAACTGGTATTATTTATAGATGAAATTTAAATGAAATGAAAGACAAAAGGCAAATGAAAAA
7849097 ATT
66 ATT
*
7849100 AGCAGAACTGGTATTATTTATAGATGAAATTTAAATGAAATGAAAGACGAAAGGCAAATGAAAAA
1 AGCAGAACTGGTATTATTTATAGATGAAATTTAAATGAAATGAAAGACAAAAGGCAAATGAAAAA
7849165 ATT
66 ATT
7849168 AGC
1 AGC
7849171 TGCTGAAAAA
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.50, C:0.06, G:0.19, T:0.25
Consensus pattern (68 bp):
AGCAGAACTGGTATTATTTATAGATGAAATTTAAATGAAATGAAAGACAAAAGGCAAATGAAAAA
ATT
Found at i:7849270 original size:2 final size:2
Alignment explanation
Indices: 7849263--7849287 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7849253 TTTGTTGCAA
7849263 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
7849288 TTTGAGTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:7862295 original size:24 final size:24
Alignment explanation
Indices: 7862244--7862301 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
7862234 TTAAGTAGAT
*
7862244 AAATTTTTAATAATACAAATAAAT
1 AAATTTTTAATAATACAAATAAAA
**
7862268 AAATTTTTAACTAA-ATTAATAAAA
1 AAATTTTTAA-TAATACAAATAAAA
7862292 AAATTATTTA
1 AAATT-TTTA
7862302 TTTATTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 22 0.76
25 7 0.24
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (24 bp):
AAATTTTTAATAATACAAATAAAA
Found at i:7866490 original size:24 final size:23
Alignment explanation
Indices: 7866439--7866487 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 23
7866429 AAAAAATTAT
7866439 TTAAAAAAATAAAAATATTTTAAAA
1 TTAAAAAAATAAAAATATTTT--AA
7866464 TTAAAAAAATAAAATATATATTTA
1 TTAAAAAAATAAAA-ATAT-TTTA
7866488 TTATATATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 15 0.68
26 4 0.18
27 3 0.14
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (23 bp):
TTAAAAAAATAAAAATATTTTAA
Found at i:7877555 original size:7 final size:7
Alignment explanation
Indices: 7877543--7877582 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
7877533 ATCAAACATT
7877543 TATTCTA
1 TATTCTA
7877550 TATTCTA
1 TATTCTA
7877557 TATTCTA
1 TATTCTA
7877564 TATTCTA
1 TATTCTA
7877571 TATTCTA
1 TATTCTA
7877578 TATTC
1 TATTC
7877583 AACCCAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.28, C:0.15, G:0.00, T:0.57
Consensus pattern (7 bp):
TATTCTA
Found at i:7879894 original size:22 final size:22
Alignment explanation
Indices: 7879817--7879894 Score: 61
Period size: 22 Copynumber: 3.5 Consensus size: 22
7879807 TTAATAGTAA
*
7879817 ATATTT-AAAATTATTAATATAT
1 ATATTTAAAAATTATT-TTATAT
* *
7879839 TTTTTTGAAAATATTTATTTT-TAT
1 ATATTT-AAAA-A-TTATTTTATAT
* *
7879863 GTTTTTAAAAATTATTTTATAT
1 ATATTTAAAAATTATTTTATAT
7879885 ATATTTAAAA
1 ATATTTAAAA
7879895 TATTTATGTA
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
21 7 0.16
22 16 0.36
23 4 0.09
24 11 0.24
25 2 0.04
26 5 0.11
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (22 bp):
ATATTTAAAAATTATTTTATAT
Found at i:7879910 original size:19 final size:21
Alignment explanation
Indices: 7879857--7879910 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 21
7879847 AAATATTTAT
*
7879857 TTTTATGT-TTTTAAAAATTA
1 TTTTATGTATTTTTAAAATTA
* *
7879877 TTTTATATATATTTAAAA-TA
1 TTTTATGTATTTTTAAAATTA
7879897 -TTTATGTATTTTTA
1 TTTTATGTATTTTTA
7879911 TATATTTCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 12 0.43
20 9 0.32
21 7 0.25
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (21 bp):
TTTTATGTATTTTTAAAATTA
Found at i:7881835 original size:51 final size:50
Alignment explanation
Indices: 7881702--7881894 Score: 219
Period size: 51 Copynumber: 3.8 Consensus size: 50
7881692 ACTATTATCA
* *
7881702 TTCGATACACATAGTAGCCTTCACATAGTACTACGCACGTGATC-AAGTT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGTT
* * * *
7881751 TTACGGTTCACGTAGTAGCCTTCACATAGTACTACATACGTGACCAAAGCTT
1 TT-CGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAG-TT
* * * *
7881803 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTA-TT
1 TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGTT
* * *
7881853 TATCGATATACGTAGTAGCCTTCACTTAGTACTACACACGTG
1 T-TCGATACACATAGTAGCCTTCACATAGTACTACACACGTG
7881895 TTCATCGATA
Statistics
Matches: 123, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
49 2 0.02
50 39 0.32
51 77 0.63
52 5 0.04
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (50 bp):
TTCGATACACATAGTAGCCTTCACATAGTACTACACACGTGACCAAAGTT
Found at i:7881838 original size:26 final size:26
Alignment explanation
Indices: 7881808--7881890 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
7881798 AGCTTTTCGG
7881808 TACACATAGTAGCCTTCACTTAGTAC
1 TACACATAGTAGCCTTCACTTAGTAC
*
7881834 TACACAT-GT-GACCATT-ATTTA-T-C
1 TACACATAGTAG-CC-TTCACTTAGTAC
* *
7881857 GATATACGTAGTAGCCTTCACTTAGTAC
1 --TACACATAGTAGCCTTCACTTAGTAC
7881885 TACACA
1 TACACA
7881891 CGTGTTCATC
Statistics
Matches: 42, Mismatches: 6, Indels: 18
0.64 0.09 0.27
Matches are distributed among these distances:
23 1 0.02
24 2 0.05
25 15 0.36
26 21 0.50
27 2 0.05
28 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (26 bp):
TACACATAGTAGCCTTCACTTAGTAC
Found at i:7919109 original size:23 final size:25
Alignment explanation
Indices: 7919081--7919141 Score: 74
Period size: 23 Copynumber: 2.6 Consensus size: 25
7919071 AAATTTAAAA
*
7919081 TAAATATTTATATTATTTT-TAT-T
1 TAAATATTTATATAATTTTATATAT
*
7919104 TTAATATTTA-ATAATTTTATATAT
1 TAAATATTTATATAATTTTATATAT
*
7919128 TAAATTTTTATATA
1 TAAATATTTATATA
7919142 TAGTCACTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
22 7 0.23
23 12 0.39
24 9 0.29
25 3 0.10
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
TAAATATTTATATAATTTTATATAT
Found at i:7919127 original size:17 final size:16
Alignment explanation
Indices: 7919101--7919142 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7919091 TATTATTTTT
7919101 ATTTTA-ATATTTAATA
1 ATTTTATATATTTAA-A
7919117 ATTTTATATA-TTAAA
1 ATTTTATATATTTAAA
*
7919132 TTTTTATATAT
1 ATTTTATATAT
7919143 AGTCACTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 10 0.43
16 10 0.43
17 3 0.13
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
ATTTTATATATTTAAA
Found at i:7924427 original size:999 final size:999
Alignment explanation
Indices: 7922822--7924824 Score: 3997
Period size: 999 Copynumber: 2.0 Consensus size: 999
7922812 ATCTCCACCA
*
7922822 ACAAAGATGAAGCCATGAGAGAATTTTGGGTGATTTTGGGTTATCTTTCGCCTACTTGTTCTTTC
1 ACAAGGATGAAGCCATGAGAGAATTTTGGGTGATTTTGGGTTATCTTTCGCCTACTTGTTCTTTC
7922887 AGTTTATTTATCCCTTCCTTCTTTTGATTGAATCCTAATCTTCTCCTAAGTTTGGTATCTGCTAC
66 AGTTTATTTATCCCTTCCTTCTTTTGATTGAATCCTAATCTTCTCCTAAGTTTGGTATCTGCTAC
7922952 AATGGCCGTTCAAGCTCAATACCCTTCTAATGTTCTTCTTTTAAACAGGTTCATCTTGGCCTCTC
131 AATGGCCGTTCAAGCTCAATACCCTTCTAATGTTCTTCTTTTAAACAGGTTCATCTTGGCCTCTC
7923017 CCTAGTTCTCTGTTTCTTTCTTTGCTTGCTTATTATTTCTGGTCTAATTTTGTTTTGGGGGTTAT
196 CCTAGTTCTCTGTTTCTTTCTTTGCTTGCTTATTATTTCTGGTCTAATTTTGTTTTGGGGGTTAT
7923082 GTATTTGCAGAAGTGGACAAGAGGGGAATGAGTTTCCATTGCAGCAACAAGCAGGAGGAGTTTTT
261 GTATTTGCAGAAGTGGACAAGAGGGGAATGAGTTTCCATTGCAGCAACAAGCAGGAGGAGTTTTT
7923147 CTCGATCAATCCCATTCTCATATGTTGTTCAACAATAATAATAATAATCCACGCAAAAGAGGAAG
326 CTCGATCAATCCCATTCTCATATGTTGTTCAACAATAATAATAATAATCCACGCAAAAGAGGAAG
7923212 AGAAGTTGCAGGGGCGGCAATAACAGTGCCGATCAATTCATATTCCATGCAGACTCAACCGCCTC
391 AGAAGTTGCAGGGGCGGCAATAACAGTGCCGATCAATTCATATTCCATGCAGACTCAACCGCCTC
7923277 AGCTGATCGAGCTTTCTCAACTTCACCACCCAAATGTAGTCTCCACCGGCCTCCGCTTATCTTTT
456 AGCTGATCGAGCTTTCTCAACTTCACCACCCAAATGTAGTCTCCACCGGCCTCCGCTTATCTTTT
7923342 GGCGATCAACAACAAAAGTTACAGCAACATCAAAATCAGAACCAAAATCAAAGCTATGGGCAACA
521 GGCGATCAACAACAAAAGTTACAGCAACATCAAAATCAGAACCAAAATCAAAGCTATGGGCAACA
7923407 ACAACAGCAACAAAATCTTGTTTCAAATTCCTCTGTTTTTGCATCCGATGATCTGGTCACCCAAA
586 ACAACAGCAACAAAATCTTGTTTCAAATTCCTCTGTTTTTGCATCCGATGATCTGGTCACCCAAA
7923472 TCAAACGCCAGAGAGACGAATTAGACCATTTTCTTCAAGCCCAGGTATTGGGTTTTCTCTTTTTC
651 TCAAACGCCAGAGAGACGAATTAGACCATTTTCTTCAAGCCCAGGTATTGGGTTTTCTCTTTTTC
7923537 TAAATCGGGTTTTGGTCAATTTTTTTAGTTTTGGGGAAAATGTTGATGTATATTTGGGTTGTTTT
716 TAAATCGGGTTTTGGTCAATTTTTTTAGTTTTGGGGAAAATGTTGATGTATATTTGGGTTGTTTT
7923602 TTGTTATTTACTGAAGGGCGAGGAATTACGACGTACTTTAGCGGAGAAAAGGCATAGGCATTACC
781 TTGTTATTTACTGAAGGGCGAGGAATTACGACGTACTTTAGCGGAGAAAAGGCATAGGCATTACC
7923667 GTGCGCTACTAGAGGCAGCGGAGGAATCGGTAGCGAGGAGGTTTAGAGAAAAAGAAGCGGAAGTG
846 GTGCGCTACTAGAGGCAGCGGAGGAATCGGTAGCGAGGAGGTTTAGAGAAAAAGAAGCGGAAGTG
7923732 GAGAAAGCAAAGCGCCGGAACGTGGAGTTAGAGGCACGTGCGGTGCAACTTGGCGCGGAGGTACA
911 GAGAAAGCAAAGCGCCGGAACGTGGAGTTAGAGGCACGTGCGGTGCAACTTGGCGCGGAGGTACA
7923797 GGTTTGGCAGGCGAAAGCCAAGGC
976 GGTTTGGCAGGCGAAAGCCAAGGC
7923821 ACAAGGATGAAGCCATGAGAGAATTTTGGGTGATTTTGGGTTATCTTTCGCCTACTTGTTCTTTC
1 ACAAGGATGAAGCCATGAGAGAATTTTGGGTGATTTTGGGTTATCTTTCGCCTACTTGTTCTTTC
7923886 AGTTTATTTATCCCTTCCTTCTTTTGATTGAATCCTAATCTTCTCCTAAGTTTGGTATCTGCTAC
66 AGTTTATTTATCCCTTCCTTCTTTTGATTGAATCCTAATCTTCTCCTAAGTTTGGTATCTGCTAC
7923951 AATGGCCGTTCAAGCTCAATACCCTTCTAATGTTCTTCTTTTAAACAGGTTCATCTTGGCCTCTC
131 AATGGCCGTTCAAGCTCAATACCCTTCTAATGTTCTTCTTTTAAACAGGTTCATCTTGGCCTCTC
7924016 CCTAGTTCTCTGTTTCTTTCTTTGCTTGCTTATTATTTCTGGTCTAATTTTGTTTTGGGGGTTAT
196 CCTAGTTCTCTGTTTCTTTCTTTGCTTGCTTATTATTTCTGGTCTAATTTTGTTTTGGGGGTTAT
7924081 GTATTTGCAGAAGTGGACAAGAGGGGAATGAGTTTCCATTGCAGCAACAAGCAGGAGGAGTTTTT
261 GTATTTGCAGAAGTGGACAAGAGGGGAATGAGTTTCCATTGCAGCAACAAGCAGGAGGAGTTTTT
7924146 CTCGATCAATCCCATTCTCATATGTTGTTCAACAATAATAATAATAATCCACGCAAAAGAGGAAG
326 CTCGATCAATCCCATTCTCATATGTTGTTCAACAATAATAATAATAATCCACGCAAAAGAGGAAG
7924211 AGAAGTTGCAGGGGCGGCAATAACAGTGCCGATCAATTCATATTCCATGCAGACTCAACCGCCTC
391 AGAAGTTGCAGGGGCGGCAATAACAGTGCCGATCAATTCATATTCCATGCAGACTCAACCGCCTC
7924276 AGCTGATCGAGCTTTCTCAACTTCACCACCCAAATGTAGTCTCCACCGGCCTCCGCTTATCTTTT
456 AGCTGATCGAGCTTTCTCAACTTCACCACCCAAATGTAGTCTCCACCGGCCTCCGCTTATCTTTT
7924341 GGCGATCAACAACAAAAGTTACAGCAACATCAAAATCAGAACCAAAATCAAAGCTATGGGCAACA
521 GGCGATCAACAACAAAAGTTACAGCAACATCAAAATCAGAACCAAAATCAAAGCTATGGGCAACA
7924406 ACAACAGCAACAAAATCTTGTTTCAAATTCCTCTGTTTTTGCATCCGATGATCTGGTCACCCAAA
586 ACAACAGCAACAAAATCTTGTTTCAAATTCCTCTGTTTTTGCATCCGATGATCTGGTCACCCAAA
7924471 TCAAACGCCAGAGAGACGAATTAGACCATTTTCTTCAAGCCCAGGTATTGGGTTTTCTCTTTTTC
651 TCAAACGCCAGAGAGACGAATTAGACCATTTTCTTCAAGCCCAGGTATTGGGTTTTCTCTTTTTC
7924536 TAAATCGGGTTTTGGTCAATTTTTTTAGTTTTGGGGAAAATGTTGATGTATATTTGGGTTGTTTT
716 TAAATCGGGTTTTGGTCAATTTTTTTAGTTTTGGGGAAAATGTTGATGTATATTTGGGTTGTTTT
7924601 TTGTTATTTACTGAAGGGCGAGGAATTACGACGTACTTTAGCGGAGAAAAGGCATAGGCATTACC
781 TTGTTATTTACTGAAGGGCGAGGAATTACGACGTACTTTAGCGGAGAAAAGGCATAGGCATTACC
7924666 GTGCGCTACTAGAGGCAGCGGAGGAATCGGTAGCGAGGAGGTTTAGAGAAAAAGAAGCGGAAGTG
846 GTGCGCTACTAGAGGCAGCGGAGGAATCGGTAGCGAGGAGGTTTAGAGAAAAAGAAGCGGAAGTG
7924731 GAGAAAGCAAAGCGCCGGAACGTGGAGTTAGAGGCACGTGCGGTGCAACTTGGCGCGGAGGTACA
911 GAGAAAGCAAAGCGCCGGAACGTGGAGTTAGAGGCACGTGCGGTGCAACTTGGCGCGGAGGTACA
7924796 GGTTTGGCAGGCGAAAGCCAAGGC
976 GGTTTGGCAGGCGAAAGCCAAGGC
7924820 ACAAG
1 ACAAG
7924825 AGGTGACGGC
Statistics
Matches: 1003, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
999 1003 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.30
Consensus pattern (999 bp):
ACAAGGATGAAGCCATGAGAGAATTTTGGGTGATTTTGGGTTATCTTTCGCCTACTTGTTCTTTC
AGTTTATTTATCCCTTCCTTCTTTTGATTGAATCCTAATCTTCTCCTAAGTTTGGTATCTGCTAC
AATGGCCGTTCAAGCTCAATACCCTTCTAATGTTCTTCTTTTAAACAGGTTCATCTTGGCCTCTC
CCTAGTTCTCTGTTTCTTTCTTTGCTTGCTTATTATTTCTGGTCTAATTTTGTTTTGGGGGTTAT
GTATTTGCAGAAGTGGACAAGAGGGGAATGAGTTTCCATTGCAGCAACAAGCAGGAGGAGTTTTT
CTCGATCAATCCCATTCTCATATGTTGTTCAACAATAATAATAATAATCCACGCAAAAGAGGAAG
AGAAGTTGCAGGGGCGGCAATAACAGTGCCGATCAATTCATATTCCATGCAGACTCAACCGCCTC
AGCTGATCGAGCTTTCTCAACTTCACCACCCAAATGTAGTCTCCACCGGCCTCCGCTTATCTTTT
GGCGATCAACAACAAAAGTTACAGCAACATCAAAATCAGAACCAAAATCAAAGCTATGGGCAACA
ACAACAGCAACAAAATCTTGTTTCAAATTCCTCTGTTTTTGCATCCGATGATCTGGTCACCCAAA
TCAAACGCCAGAGAGACGAATTAGACCATTTTCTTCAAGCCCAGGTATTGGGTTTTCTCTTTTTC
TAAATCGGGTTTTGGTCAATTTTTTTAGTTTTGGGGAAAATGTTGATGTATATTTGGGTTGTTTT
TTGTTATTTACTGAAGGGCGAGGAATTACGACGTACTTTAGCGGAGAAAAGGCATAGGCATTACC
GTGCGCTACTAGAGGCAGCGGAGGAATCGGTAGCGAGGAGGTTTAGAGAAAAAGAAGCGGAAGTG
GAGAAAGCAAAGCGCCGGAACGTGGAGTTAGAGGCACGTGCGGTGCAACTTGGCGCGGAGGTACA
GGTTTGGCAGGCGAAAGCCAAGGC
Found at i:7925768 original size:16 final size:19
Alignment explanation
Indices: 7925747--7925786 Score: 59
Period size: 16 Copynumber: 2.3 Consensus size: 19
7925737 TAATATCAAC
7925747 TTATAAAAAT-TA-T-AAA
1 TTATAAAAATCTAGTAAAA
7925763 TTATAAAAATCTAGTAAAA
1 TTATAAAAATCTAGTAAAA
7925782 TTATA
1 TTATA
7925787 GTTTTTTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 10 0.48
17 2 0.10
18 1 0.05
19 8 0.38
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (19 bp):
TTATAAAAATCTAGTAAAA
Found at i:7925840 original size:21 final size:22
Alignment explanation
Indices: 7925816--7925858 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
7925806 TAAAGCATAT
*
7925816 TTAAAATTTTATAAAAA-AATA
1 TTAAAATTCTATAAAAATAATA
7925837 TTAAAATTCTATAAAAATAATA
1 TTAAAATTCTATAAAAATAATA
7925859 AACAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
TTAAAATTCTATAAAAATAATA
Found at i:7934213 original size:25 final size:25
Alignment explanation
Indices: 7934140--7934214 Score: 87
Period size: 25 Copynumber: 3.0 Consensus size: 25
7934130 AATGGCTCTC
*
7934140 TTAAGCTTCCCGATATATAGCTCGA
1 TTAAGCTTCCTGATATATAGCTCGA
* * * *
7934165 TTGAGCTTCCAGATATACATCTCGA
1 TTAAGCTTCCTGATATATAGCTCGA
* *
7934190 TTAAGCTTCCTGTTATATGGCTCGA
1 TTAAGCTTCCTGATATATAGCTCGA
7934215 AAGAGCTTCT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (25 bp):
TTAAGCTTCCTGATATATAGCTCGA
Done.