Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 24 of 153
Found at i:8392499 original size:17 final size:17
Alignment explanation
Indices: 8392458--8392490 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8392448 TTTAAAGATT
8392458 ATATAAAATTATTAAAA
1 ATATAAAATTATTAAAA
*
8392475 ATAAAAAATTA-TAAAA
1 ATATAAAATTATTAAAA
8392491 TCTATAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
ATATAAAATTATTAAAA
Found at i:8394241 original size:24 final size:26
Alignment explanation
Indices: 8394205--8394256 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 26
8394195 TTGGTGCACC
*
8394205 AAGAAAAAAAAATCAAAGA-GAA-AA
1 AAGAAAAAAAAATAAAAGACGAAGAA
* *
8394229 AAGAGAAAGAAATAAAAGACGAAGAA
1 AAGAAAAAAAAATAAAAGACGAAGAA
8394255 AA
1 AA
8394257 TCACCTATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 16 0.70
25 3 0.13
26 4 0.17
ACGTcount: A:0.75, C:0.04, G:0.17, T:0.04
Consensus pattern (26 bp):
AAGAAAAAAAAATAAAAGACGAAGAA
Found at i:8398342 original size:14 final size:14
Alignment explanation
Indices: 8398323--8398351 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8398313 CACCTGCTCC
8398323 ACCCGCAAAAGAAA
1 ACCCGCAAAAGAAA
8398337 ACCCGCAAAAGAAA
1 ACCCGCAAAAGAAA
8398351 A
1 A
8398352 GAAAACAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.28, G:0.14, T:0.00
Consensus pattern (14 bp):
ACCCGCAAAAGAAA
Found at i:8401936 original size:14 final size:14
Alignment explanation
Indices: 8401917--8401946 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8401907 GTGAAAAAAA
8401917 ATATGTATATAGAT
1 ATATGTATATAGAT
*
8401931 ATATGTATATATAT
1 ATATGTATATAGAT
8401945 AT
1 AT
8401947 GGATATGTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (14 bp):
ATATGTATATAGAT
Found at i:8401993 original size:39 final size:39
Alignment explanation
Indices: 8401950--8402024 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
8401940 TATATATGGA
*
8401950 TATGTATATAAATTATAAAATATA-TATAAAAAATATGAG
1 TATGTATATAAA-TATAAAATAAATTATAAAAAATATGAG
* *
8401989 TATGTATATATATATTAAATAAATTATAAAAAATAT
1 TATGTATATAAATATAAAATAAATTATAAAAAATAT
8402025 ATATACGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 9 0.28
39 23 0.72
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (39 bp):
TATGTATATAAATATAAAATAAATTATAAAAAATATGAG
Found at i:8410975 original size:40 final size:40
Alignment explanation
Indices: 8410926--8411005 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
8410916 TAAAATAATT
* * *
8410926 TTGAAATATTTATTATATTCTACTAATTATAAATGAAAAG
1 TTGAAATATTTATAATATTATAATAATTATAAATGAAAAG
* * *
8410966 TTGAAATATTTATAATGTTATAATATTTATAAGTGAAAAG
1 TTGAAATATTTATAATATTATAATAATTATAAATGAAAAG
8411006 CTAAAAGCAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (40 bp):
TTGAAATATTTATAATATTATAATAATTATAAATGAAAAG
Found at i:8412292 original size:21 final size:20
Alignment explanation
Indices: 8412235--8412298 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 20
8412225 TTTTATAATC
*
8412235 TATA-ATTTATTTCGATTTTAT
1 TATATATTTA-TTCAATTTT-T
8412256 TATATATTT-TT-AATTTTT
1 TATATATTTATTCAATTTTT
* *
8412274 TATATATTTAATTCTATTTTC
1 TATATATTT-ATTCAATTTTT
8412295 TATA
1 TATA
8412299 AGTTTTAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
18 10 0.28
19 5 0.14
20 4 0.11
21 13 0.36
22 4 0.11
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.64
Consensus pattern (20 bp):
TATATATTTATTCAATTTTT
Found at i:8413048 original size:25 final size:26
Alignment explanation
Indices: 8413011--8413067 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
8413001 TATTTCAAAA
* *
8413011 TAAAAACATAAAATTTGAT-ATTTTAT
1 TAAAAACATAAAATAT-ATAAATTTAT
*
8413037 TAAAAATA-AAAATATATAAATTTAT
1 TAAAAACATAAAATATATAAATTTAT
8413062 TAAAAA
1 TAAAAA
8413068 ATATGGAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 2 0.07
25 18 0.67
26 7 0.26
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (26 bp):
TAAAAACATAAAATATATAAATTTAT
Found at i:8420083 original size:20 final size:20
Alignment explanation
Indices: 8420060--8420106 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
8420050 GGGTTAAGAT
*
8420060 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
8420080 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
8420100 TGAGCTG
1 TGAGCTG
8420107 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:8422248 original size:14 final size:14
Alignment explanation
Indices: 8422226--8422269 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
8422216 TCTGTTTGTT
*
8422226 TTTTTGAAAATGAC
1 TTTTGGAAAATGAC
* *
8422240 TTTTGGAAAATAAT
1 TTTTGGAAAATGAC
8422254 TTTTGGAAAATGAC
1 TTTTGGAAAATGAC
8422268 TT
1 TT
8422270 ATTTTTCTGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.43
Consensus pattern (14 bp):
TTTTGGAAAATGAC
Found at i:8422772 original size:15 final size:15
Alignment explanation
Indices: 8422717--8422773 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 15
8422707 TTTACACTAC
8422717 AAAATATTTATTATT
1 AAAATATTTATTATT
* *
8422732 AATATATTTATAATTGT
1 AAAATATTTATTA-T-T
8422749 AAGAAATATTTATTATT
1 -A-AAATATTTATTATT
8422766 AAAATATT
1 AAAATATT
8422774 AATATTGAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 18 0.53
16 2 0.06
17 2 0.06
18 2 0.06
19 10 0.29
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (15 bp):
AAAATATTTATTATT
Found at i:8422825 original size:16 final size:16
Alignment explanation
Indices: 8422801--8422842 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
8422791 ATAATATGTG
*
8422801 ATTAATATTATTTAAA
1 ATTATTATTATTTAAA
*
8422817 ATTATTATTTTTTAAA
1 ATTATTATTATTTAAA
*
8422833 TTTATTATTA
1 ATTATTATTA
8422843 AAATAAAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
ATTATTATTATTTAAA
Found at i:8432053 original size:21 final size:21
Alignment explanation
Indices: 8432027--8432067 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8432017 AGTCGAGCAA
* *
8432027 TACTCCATAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
8432048 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
8432068 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:8449189 original size:18 final size:18
Alignment explanation
Indices: 8449166--8449200 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8449156 AACAAGCTCA
8449166 TTCATACCAATAGAGACC
1 TTCATACCAATAGAGACC
*
8449184 TTCATATCAATAGAGAC
1 TTCATACCAATAGAGAC
8449201 AAACATGGCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (18 bp):
TTCATACCAATAGAGACC
Found at i:8449650 original size:50 final size:50
Alignment explanation
Indices: 8449595--8449702 Score: 155
Period size: 50 Copynumber: 2.2 Consensus size: 50
8449585 AAAATGAGTT
* * *
8449595 ATTTTTTTAATGGCGCCTATTTGAGAGGCGCCAATGATTATTTTATATT-A
1 ATTTTTTTAATGGCGCCTATCTGAGA-GCGCCAATGAATATTATATATTAA
* *
8449645 ATTTTTTTAATGGTGCCTATCTGATAGCGCCAATGAATATTATATATTAA
1 ATTTTTTTAATGGCGCCTATCTGAGAGCGCCAATGAATATTATATATTAA
8449695 ATTTTTTT
1 ATTTTTTT
8449703 CTTTTAATAA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
49 20 0.38
50 32 0.62
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46
Consensus pattern (50 bp):
ATTTTTTTAATGGCGCCTATCTGAGAGCGCCAATGAATATTATATATTAA
Found at i:8449965 original size:18 final size:18
Alignment explanation
Indices: 8449942--8449976 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
8449932 AAAGAAAGGA
8449942 AAACAAGAAGAATGATAC
1 AAACAAGAAGAATGATAC
8449960 AAACAAGAAGAATGATA
1 AAACAAGAAGAATGATA
8449977 AGGTATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.63, C:0.09, G:0.17, T:0.11
Consensus pattern (18 bp):
AAACAAGAAGAATGATAC
Found at i:8451076 original size:45 final size:44
Alignment explanation
Indices: 8451015--8451102 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 44
8451005 TATAGCATGA
* *
8451015 ATATATCAGTAGACTACAAAGTCGTCGAGTCTAAACCAATATTAT
1 ATATATCAATAGACTACAAAGTCGT-GAGTCTAAACCAACATTAT
*
8451060 ATATATCAATATACTACAAAGTCGTGAGTCTAAACCAACATTA
1 ATATATCAATAGACTACAAAGTCGTGAGTCTAAACCAACATTA
8451103 AACTCTTTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 17 0.43
45 23 0.57
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.28
Consensus pattern (44 bp):
ATATATCAATAGACTACAAAGTCGTGAGTCTAAACCAACATTAT
Found at i:8451183 original size:17 final size:16
Alignment explanation
Indices: 8451163--8451212 Score: 57
Period size: 17 Copynumber: 3.1 Consensus size: 16
8451153 TTTTCTTTAT
8451163 TTCTTCTTTTTCTTCTC
1 TTCTTCTTTTTC-TCTC
*
8451180 TTCTTCTCCTTTCTCTC
1 TTCTTCT-TTTTCTCTC
*
8451197 TT-TTTTTTTTCTCTC
1 TTCTTCTTTTTCTCTC
8451212 T
1 T
8451213 ACCGTTCATG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 9 0.31
16 3 0.10
17 13 0.45
18 4 0.14
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (16 bp):
TTCTTCTTTTTCTCTC
Found at i:8459068 original size:14 final size:14
Alignment explanation
Indices: 8459049--8459075 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8459039 CAAACAAATC
8459049 AATTAATTTAAGCT
1 AATTAATTTAAGCT
8459063 AATTAATTTAAGC
1 AATTAATTTAAGC
8459076 AAGATTGTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (14 bp):
AATTAATTTAAGCT
Found at i:8460155 original size:73 final size:73
Alignment explanation
Indices: 8460036--8460181 Score: 247
Period size: 73 Copynumber: 2.0 Consensus size: 73
8460026 AATTGAGGAG
**
8460036 TTAATTTCTTTTATTTGCAATCCCATCTTAATCTTGCTTTGAATAATTATTGCCTTAATTATAAA
1 TTAATTTCTTTTATCAGCAATCCCATCTTAATCTTGCTTTGAATAATTATTGCCTTAATTATAAA
8460101 ATTAAGCT
66 ATTAAGCT
* *
8460109 TTAATTTCTTTTATCAGCAATCCCATCTTAATTTTGCTTTGGATAATTATTGCCTTAATTATAAA
1 TTAATTTCTTTTATCAGCAATCCCATCTTAATCTTGCTTTGAATAATTATTGCCTTAATTATAAA
*
8460174 CTTAAGCT
66 ATTAAGCT
8460182 CTAAATTATA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.47
Consensus pattern (73 bp):
TTAATTTCTTTTATCAGCAATCCCATCTTAATCTTGCTTTGAATAATTATTGCCTTAATTATAAA
ATTAAGCT
Found at i:8467558 original size:37 final size:36
Alignment explanation
Indices: 8467514--8467633 Score: 157
Period size: 37 Copynumber: 3.5 Consensus size: 36
8467504 CACTTGTCCC
8467514 TGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCA-CTATCACTTTGTTTCT
8467551 TGATCAGATAAGTGTAG--------ACTTTGTTTCT
1 TGATCAGATAAGTGTAGCCACTATCACTTTGTTTCT
*
8467579 TGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCT
1 TGATCAGATAAGTGTAGCCAC-TATCACTTTGTTTCT
8467616 TGATCAGATAAGTGTAGC
1 TGATCAGATAAGTGTAGC
8467634 TAAAGCTATC
Statistics
Matches: 73, Mismatches: 1, Indels: 18
0.79 0.01 0.20
Matches are distributed among these distances:
28 28 0.38
37 45 0.62
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (36 bp):
TGATCAGATAAGTGTAGCCACTATCACTTTGTTTCT
Found at i:8467580 original size:28 final size:28
Alignment explanation
Indices: 8467540--8467595 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
8467530 GCCACCTATC
8467540 ACTTTGTTTCTTGATCAGATAAGTGTAG
1 ACTTTGTTTCTTGATCAGATAAGTGTAG
8467568 ACTTTGTTTCTTGATCAGATAAGTGTAG
1 ACTTTGTTTCTTGATCAGATAAGTGTAG
8467596 CCACTTATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.11, G:0.21, T:0.43
Consensus pattern (28 bp):
ACTTTGTTTCTTGATCAGATAAGTGTAG
Found at i:8467664 original size:46 final size:46
Alignment explanation
Indices: 8467597--8467865 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
8467587 TAAGTGTAGC
* **
8467597 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
8467643 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8467689 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
8467741 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
8467787 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
8467839 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
8467866 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:8467716 original size:52 final size:52
Alignment explanation
Indices: 8467640--8467859 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
8467630 TAGCTAAAGC
* *
8467640 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8467693 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
8467745 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
8467791 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
8467843 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
8467860 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:8467724 original size:98 final size:98
Alignment explanation
Indices: 8467597--8467865 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
8467587 TAAGTGTAGC
* * *
8467597 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
8467662 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
8467696 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
8467761 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
8467794 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
8467859 GATCAGA
66 GATCAGA
8467866 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:8470555 original size:29 final size:29
Alignment explanation
Indices: 8470489--8470555 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
8470479 ACTTCGTAAT
*
8470489 ATTTAAAAATATAAGGACTAAATTCTTAA
1 ATTTAAAAATATAAGAACTAAATTCTTAA
**
8470518 AAATAAAAATATACA-AACTAAATTC-TAA
1 ATTTAAAAATATA-AGAACTAAATTCTTAA
8470546 ATTTACAAAA
1 ATTTA-AAAA
8470556 AATATATAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
28 6 0.19
29 24 0.77
30 1 0.03
ACGTcount: A:0.58, C:0.09, G:0.03, T:0.30
Consensus pattern (29 bp):
ATTTAAAAATATAAGAACTAAATTCTTAA
Found at i:8471118 original size:103 final size:102
Alignment explanation
Indices: 8470983--8471170 Score: 299
Period size: 103 Copynumber: 1.8 Consensus size: 102
8470973 TATAATTATA
*
8470983 TTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAGAAATTTTTTTTTAA-AT
1 TTTATTTTTTTCGTATACTGATATCTGATTCTGACACG--AAAAAAA-AAATATTTTTTTAATAT
8471047 GTACTGGGTGCCGGCCATTGACAGGCCAGCACCAATTTTT
63 GTACTGGGTGCCGGCCATTGACAGGCCAGCACCAATTTTT
* *
8471087 TTTA-TTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAATAATATTTTTTTAATTTGTA
1 TTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAATATTTTTTTAATATGTA
*
8471151 CTGGGTGCTGGCCATTGACA
66 CTGGGTGCCGGCCATTGACA
8471171 AACAATAAAG
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
100 12 0.15
101 30 0.38
103 33 0.42
104 4 0.05
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (102 bp):
TTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAATATTTTTTTAATATGTA
CTGGGTGCCGGCCATTGACAGGCCAGCACCAATTTTT
Found at i:8471189 original size:103 final size:103
Alignment explanation
Indices: 8470983--8471191 Score: 280
Period size: 101 Copynumber: 2.0 Consensus size: 103
8470973 TATAATTATA
*
8470983 TTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAGAAATTTTTTTTTAAATG
1 TTTATTTTTTTCGTATACTGATATCTGATTCTGACACG-AAAAAAAAGAAATATTTTTTTAAATG
** * * *
8471048 TACTGGGTGCCGGCCATTGACAGGCCAGCACCAATTTTT
65 TACTGGGTGCCGGCCATTGACAAACAAGAAACAATTTTT
* *
8471087 TTTA-TTTTTTCGTATACTGATATCTGATTCTGACACG-AAAAAAA-TAATATTTTTTTAATTTG
1 TTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAGAAATATTTTTTTAA-ATG
* * *
8471149 TACTGGGTGCTGGCCATTGACAAACAATAAAGAATTTTT
65 TACTGGGTGCCGGCCATTGACAAACAAGAAACAATTTTT
8471188 TTTA
1 TTTA
8471192 AATTGTACTG
Statistics
Matches: 93, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
100 12 0.13
101 44 0.47
103 33 0.35
104 4 0.04
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (103 bp):
TTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAAAAGAAATATTTTTTTAAATGT
ACTGGGTGCCGGCCATTGACAAACAAGAAACAATTTTT
Found at i:8471282 original size:153 final size:150
Alignment explanation
Indices: 8471035--8471325 Score: 469
Period size: 153 Copynumber: 1.9 Consensus size: 150
8471025 AAAAAGAAAT
* *
8471035 TTTTTTTTAAATGTACTGGGTGCCGGCCATTGACAGGCCAGCACCAATTTTTTTTATTTTTTCGT
1 TTTTTTTTAAATGTACTGGGTGCCGGCCATTAACAGGCCAACACCAATTTTTTTTATTTTTTCGT
* * * *
8471100 ATACTGATATCTGATTCTGACACGAAAAAAATA-ATA-TTTTTTTAATTTGTACTGGGTGCTGGC
66 ATACTGATATCTGATTCTGACACGAAAAAAAAAGAAATTTTTTTTAAATTGTACTGGGTGCCGGC
8471163 CATTGACAAACAATAAAGAA
131 CATTGACAAACAATAAAGAA
8471183 TTTTTTTTAAATTGTACTGGGTGCCGGCCATTAACAGGCCAACACCCAAAATTTTTTTTATTTTT
1 TTTTTTTTAAA-TGTACTGGGTGCCGGCCATTAACAGGCCAACA-CC--AATTTTTTTTA-TTTT
8471248 TTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAGAAATTTTTTTTAAATTGTACTGGGTG
61 TTCGTATACTGATATCTGATTCTGACACGAAAAAAAAAGAAATTTTTTTTAAATTGTACTGGGTG
8471313 CCGGCCATTGACA
126 CCGGCCATTGACA
8471326 GGCCAGTACC
Statistics
Matches: 130, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
148 11 0.08
149 30 0.23
150 2 0.02
152 11 0.08
153 41 0.32
154 2 0.02
155 33 0.25
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (150 bp):
TTTTTTTTAAATGTACTGGGTGCCGGCCATTAACAGGCCAACACCAATTTTTTTTATTTTTTCGT
ATACTGATATCTGATTCTGACACGAAAAAAAAAGAAATTTTTTTTAAATTGTACTGGGTGCCGGC
CATTGACAAACAATAAAGAA
Found at i:8471292 original size:107 final size:109
Alignment explanation
Indices: 8471177--8471394 Score: 334
Period size: 107 Copynumber: 2.0 Consensus size: 109
8471167 GACAAACAAT
8471177 AAAGAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTAACAGGCCAACACCC-AAA-A-TTTTT
1 AAAGAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTAACAGGCCAACACCCAAAATATTTTTT
8471239 TTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAA
66 TTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAA
* **
8471283 AAAGAAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGTACCCAAAAATTTTTA
1 AAAG-AATTTTTTTTAAATTGTACTGGGTGCCGGCCATTAACAGGCCAACACCC-AAAA----TA
8471348 TTTTTTTTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAA
60 TTTTTTTTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAA
8471395 TTTTTTTTAA
Statistics
Matches: 100, Mismatches: 3, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
106 4 0.04
107 46 0.46
109 3 0.03
114 1 0.01
115 46 0.46
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (109 bp):
AAAGAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTAACAGGCCAACACCCAAAATATTTTTT
TTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAAAAA
Found at i:8471417 original size:66 final size:66
Alignment explanation
Indices: 8471347--8471724 Score: 747
Period size: 66 Copynumber: 5.7 Consensus size: 66
8471337 AAAAATTTTT
*
8471347 ATTTTTTTTTATTTTTTTCGTATACTGATATCTGATTCTGACACGAAATTTTTTTTAAGCACCTA
1 ATTTTTTTTAATTTTTTTCGTATACTGATATCTGATTCTGACACGAAATTTTTTTTAAGCACCTA
8471412 A
66 A
8471413 ATTTTTTTTAATTTTTTTCGTATACTGATATCTGATTCTGACACGAAATTTTTTTTAAGCACCTA
1 ATTTTTTTTAATTTTTTTCGTATACTGATATCTGATTCTGACACGAAATTTTTTTTAAGCACCTA
8471478 A
66 A
8471479 ATTTTTTTTAATTTTTTTCGTATACTGATATCTGATTCTGACACGAAATTTTTTTTAAGCACCTA
1 ATTTTTTTTAATTTTTTTCGTATACTGATATCTGATTCTGACACGAAATTTTTTTTAAGCACCTA
8471544 A
66 A
8471545 ATTTTTTTTAATTTTTTTCGTATACTGATATCTGATTCTGACACGAAATTTTTTTTAAGCACCTA
1 ATTTTTTTTAATTTTTTTCGTATACTGATATCTGATTCTGACACGAAATTTTTTTTAAGCACCTA
8471610 A
66 A
8471611 ATTTTTTTTAATTTTTTTCGTATACTGATATCTGATTCTGACACGAAATTTTTTTTAAGCACCTA
1 ATTTTTTTTAATTTTTTTCGTATACTGATATCTGATTCTGACACGAAATTTTTTTTAAGCACCTA
8471676 A
66 A
8471677 ATTTTTTTTAATTTTTTTCGTATACTGATATCTGATTCTGACACGAAA
1 ATTTTTTTTAATTTTTTTCGTATACTGATATCTGATTCTGACACGAAA
8471725 AAAAAAAGAA
Statistics
Matches: 311, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 311 1.00
ACGTcount: A:0.27, C:0.13, G:0.09, T:0.50
Consensus pattern (66 bp):
ATTTTTTTTAATTTTTTTCGTATACTGATATCTGATTCTGACACGAAATTTTTTTTAAGCACCTA
A
Found at i:8479958 original size:25 final size:26
Alignment explanation
Indices: 8479937--8479989 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
8479927 AATAATTTCA
8479937 TTAATTTTA-AAAAAATAAAATTTAT
1 TTAATTTTATAAAAAATAAAATTTAT
* * *
8479962 TTAATTTTATAAAAGATAATATATAT
1 TTAATTTTATAAAAAATAAAATTTAT
8479988 TT
1 TT
8479990 GATAAATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (26 bp):
TTAATTTTATAAAAAATAAAATTTAT
Found at i:8480718 original size:7 final size:7
Alignment explanation
Indices: 8480706--8480743 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
8480696 GTGCAGTGGG
8480706 TTAATTT
1 TTAATTT
8480713 TTAATTT
1 TTAATTT
8480720 TTAATTT
1 TTAATTT
8480727 TTAATTT
1 TTAATTT
8480734 TTAATTT
1 TTAATTT
8480741 TTA
1 TTA
8480744 TGTATATTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTAATTT
Found at i:8497587 original size:37 final size:37
Alignment explanation
Indices: 8497546--8497619 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
8497536 TGTAAAGAAT
8497546 ATATAAAAATATAAAAAGGCAAACATCATTATAATAA
1 ATATAAAAATATAAAAAGGCAAACATCATTATAATAA
8497583 ATATAAAAATATAAAAAGGCAAACATCATTATAATAA
1 ATATAAAAATATAAAAAGGCAAACATCATTATAATAA
8497620 TATTAATTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.24
Consensus pattern (37 bp):
ATATAAAAATATAAAAAGGCAAACATCATTATAATAA
Found at i:8501977 original size:12 final size:11
Alignment explanation
Indices: 8501942--8501979 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
8501932 ATACATATAC
*
8501942 GTTCTCTTTTT
1 GTTCTTTTTTT
8501953 -TTCTTTTTTT
1 GTTCTTTTTTT
8501963 GTTCTTTTTTCT
1 GTTCTTTTTT-T
8501975 GTTCT
1 GTTCT
8501980 ACACTGAGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 9 0.38
11 9 0.38
12 6 0.25
ACGTcount: A:0.00, C:0.16, G:0.08, T:0.76
Consensus pattern (11 bp):
GTTCTTTTTTT
Found at i:8504270 original size:20 final size:21
Alignment explanation
Indices: 8504245--8504285 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8504235 ATATATATAG
*
8504245 ATATAATC-TGTAATTTTAAT
1 ATATAAACATGTAATTTTAAT
*
8504265 ATATAAACATGTCATTTTAAT
1 ATATAAACATGTAATTTTAAT
8504286 TATTAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.46
Consensus pattern (21 bp):
ATATAAACATGTAATTTTAAT
Found at i:8505315 original size:22 final size:22
Alignment explanation
Indices: 8505289--8505331 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
8505279 ACTTAGGCTA
8505289 ATATGGTA-ACTAATCTTAGAAG
1 ATATGGTATA-TAATCTTAGAAG
8505311 ATATGGTATTATAATCTTAGA
1 ATATGGTA-TATAATCTTAGA
8505332 GATCTTAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 8 0.42
23 10 0.53
24 1 0.05
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.37
Consensus pattern (22 bp):
ATATGGTATATAATCTTAGAAG
Found at i:8505355 original size:51 final size:51
Alignment explanation
Indices: 8505300--8505436 Score: 166
Period size: 51 Copynumber: 2.7 Consensus size: 51
8505290 TATGGTAACT
* *
8505300 AATCTTAGAAGATATGGTATTATAATCTTAGAGATCTTAGATATGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
* * * ** * * **
8505351 AATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
*
8505402 AATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 AATCTTAGAAGATATGATATTATAATCTTAGAGAT
8505437 TTGATGGTAG
Statistics
Matches: 67, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.40
Consensus pattern (51 bp):
AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
Found at i:8508640 original size:51 final size:51
Alignment explanation
Indices: 8508585--8508721 Score: 175
Period size: 51 Copynumber: 2.7 Consensus size: 51
8508575 TATGGTAACT
*
8508585 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
* * * ** * * **
8508636 AATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
*
8508687 AATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 AATCTTAGAAGATATGATATTATAATCTTAGAGAT
8508722 TTGATGGTAG
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (51 bp):
AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGG
Found at i:8510341 original size:26 final size:24
Alignment explanation
Indices: 8510312--8510365 Score: 58
Period size: 23 Copynumber: 2.2 Consensus size: 24
8510302 ATCACTTCCA
8510312 AACATTACACTTATATCC-AGATCATC
1 AACATT-C-CTTATA-CCAAGATCATC
*
8510338 AACA-TCGTTATACCAAGATCATC
1 AACATTCCTTATACCAAGATCATC
8510361 AACAT
1 AACAT
8510366 CCAAAATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
22 2 0.08
23 17 0.68
24 1 0.04
25 1 0.04
26 4 0.16
ACGTcount: A:0.41, C:0.26, G:0.06, T:0.28
Consensus pattern (24 bp):
AACATTCCTTATACCAAGATCATC
Found at i:8510349 original size:23 final size:23
Alignment explanation
Indices: 8510322--8510366 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
8510312 AACATTACAC
8510322 TTATATCC-AGATCATCAACATCG
1 TTATA-CCAAGATCATCAACATCG
8510345 TTATACCAAGATCATCAACATC
1 TTATACCAAGATCATCAACATC
8510367 CAAAATAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.38, C:0.27, G:0.07, T:0.29
Consensus pattern (23 bp):
TTATACCAAGATCATCAACATCG
Found at i:8511406 original size:37 final size:37
Alignment explanation
Indices: 8511363--8511433 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
8511353 TTCTTTTTAA
8511363 CATTTTCGTACACATATCAAAAAACCATATACTTATT
1 CATTTTCGTACACATATCAAAAAACCATATACTTATT
* * **
8511400 CATTTTCGTTCACTTATCAAGTAACCATATACTT
1 CATTTTCGTACACATATCAAAAAACCATATACTT
8511434 GTTATTTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.35, C:0.23, G:0.04, T:0.38
Consensus pattern (37 bp):
CATTTTCGTACACATATCAAAAAACCATATACTTATT
Found at i:8516402 original size:37 final size:35
Alignment explanation
Indices: 8516309--8516402 Score: 100
Period size: 37 Copynumber: 2.5 Consensus size: 35
8516299 GTCTCCAAAT
* *
8516309 TCACATTTCAATTCAATTTCACTTTTTCACTTTCAA
1 TCACAATTCAATTCAA-TTCACTTTTCCACTTTCAA
*
8516345 TCACAATTCAATTCAAAATTCACTTTTCCATTTTTCAA
1 TCACAATTCAATTC--AATTCACTTTTCCA-CTTTCAA
8516383 GTCA-ATATTCAATTCAATTC
1 -TCACA-ATTCAATTCAATTC
8516403 TACACATATA
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
36 13 0.26
37 16 0.32
38 9 0.18
39 12 0.24
ACGTcount: A:0.32, C:0.23, G:0.01, T:0.44
Consensus pattern (35 bp):
TCACAATTCAATTCAATTCACTTTTCCACTTTCAA
Found at i:8530581 original size:19 final size:20
Alignment explanation
Indices: 8530559--8530612 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 20
8530549 AATGCGTTAG
8530559 ATATTATAAAATATTATCAAT
1 ATATTATAAAA-ATTATCAAT
*
8530580 ATATTATAAAAA-TATGAAT
1 ATATTATAAAAATTATCAAT
*
8530599 -GATTATAAAAATTA
1 ATATTATAAAAATTA
8530613 AAAAATTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 10 0.33
19 8 0.27
20 1 0.03
21 11 0.37
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.39
Consensus pattern (20 bp):
ATATTATAAAAATTATCAAT
Found at i:8530618 original size:8 final size:9
Alignment explanation
Indices: 8530561--8530629 Score: 52
Period size: 10 Copynumber: 7.3 Consensus size: 9
8530551 TGCGTTAGAT
8530561 ATTATAAAA
1 ATTATAAAA
*
8530570 TATTATCAATAT
1 -ATTAT-AA-AA
8530582 ATTATAAAA
1 ATTATAAAA
**
8530591 A-TATGAATG
1 ATTAT-AAAA
8530600 ATTATAAAA
1 ATTATAAAA
8530609 ATTA-AAAA
1 ATTATAAAA
8530617 ATTATATAAA
1 ATTATA-AAA
8530627 ATT
1 ATT
8530630 TATTGACATG
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
8 11 0.23
9 12 0.26
10 16 0.34
11 7 0.15
12 1 0.02
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (9 bp):
ATTATAAAA
Found at i:8531134 original size:9 final size:9
Alignment explanation
Indices: 8531090--8531153 Score: 56
Period size: 10 Copynumber: 6.7 Consensus size: 9
8531080 TTCCTTTATA
*
8531090 AATTTTTAT
1 AATTTTAAT
8531099 AAATTTATAAT
1 -AATTT-TAAT
* *
8531110 AACTTTGAT
1 AATTTTAAT
*
8531119 AATTTTTTAT
1 AA-TTTTAAT
8531129 AATTTTAAT
1 AATTTTAAT
8531138 AATTTTAATT
1 AATTTTAA-T
8531148 AATTTT
1 AATTTT
8531154 GTATTACTTC
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
9 19 0.42
10 23 0.51
11 3 0.07
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (9 bp):
AATTTTAAT
Found at i:8549982 original size:17 final size:14
Alignment explanation
Indices: 8549950--8550004 Score: 56
Period size: 16 Copynumber: 3.6 Consensus size: 14
8549940 TTTTGAGCAA
8549950 TTTATTTTTTTTCT
1 TTTATTTTTTTTCT
8549964 TTTATGTTTTTTTAACT
1 TTTAT-TTTTTTT--CT
*
8549981 TTTCTTTTTTTCTCT
1 TTTATTTTTTT-TCT
8549996 CTTTATTTT
1 -TTTATTTT
8550005 CCATTATCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
14 5 0.15
15 9 0.26
16 13 0.38
17 7 0.21
ACGTcount: A:0.09, C:0.11, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTATTTTTTTTCT
Found at i:8551122 original size:47 final size:46
Alignment explanation
Indices: 8551026--8551122 Score: 113
Period size: 46 Copynumber: 2.1 Consensus size: 46
8551016 ATTAAACATA
* * * * * *
8551026 TAAATAATTAATTCAAAAAAAATAATTTCTAATATGGCAATCGATT
1 TAAACAATCAATTCAAAAAAAATAAATTCTAACATGACAATCAATT
* *
8551072 TAAACAATCAATTCAAAAGAAATAACATTCTAACATGACAATTAATT
1 TAAACAATCAATTCAAAAAAAATAA-ATTCTAACATGACAATCAATT
8551119 TAAA
1 TAAA
8551123 TATAAAAATA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
46 22 0.52
47 20 0.48
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.31
Consensus pattern (46 bp):
TAAACAATCAATTCAAAAAAAATAAATTCTAACATGACAATCAATT
Found at i:8552736 original size:20 final size:20
Alignment explanation
Indices: 8552711--8552754 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
8552701 GAGCGGGTGA
* * *
8552711 AATTTTTTGATTTCGAGTAG
1 AATTTTTAGATTTAGAGCAG
8552731 AATTTTTAGATTTAGAGCAG
1 AATTTTTAGATTTAGAGCAG
8552751 AATT
1 AATT
8552755 GACATGTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.05, G:0.18, T:0.45
Consensus pattern (20 bp):
AATTTTTAGATTTAGAGCAG
Found at i:8566044 original size:30 final size:29
Alignment explanation
Indices: 8566010--8566076 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
8566000 AACTGATACA
*
8566010 AATAAAAAGCTATAA-AAAT-TATTAATTTTT
1 AATAAAAA-ATATAAGAAATAT-TTAA-TTTT
8566040 AATAAAAAATATAAGAAATATTTAATTTT
1 AATAAAAAATATAAGAAATATTTAATTTT
*
8566069 ATTAAAAA
1 AATAAAAA
8566077 TTAGAAAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 16 0.48
30 16 0.48
31 1 0.03
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.37
Consensus pattern (29 bp):
AATAAAAAATATAAGAAATATTTAATTTT
Found at i:8566052 original size:29 final size:28
Alignment explanation
Indices: 8566010--8566085 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 28
8566000 AACTGATACA
*
8566010 AATAAAAAGCTATAAAAAT-TATTAATTTTT
1 AATAAAAA-ATATAAAAATAT-TTAA-TTTT
8566040 AATAAAAAATATAAGAAATATTTAATTTT
1 AATAAAAAATATAA-AAATATTTAATTTT
* * *
8566069 ATTAAAAATTAGAAAAA
1 AATAAAAAATATAAAAA
8566086 GATTATAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
28 3 0.08
29 20 0.50
30 16 0.40
31 1 0.03
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (28 bp):
AATAAAAAATATAAAAATATTTAATTTT
Found at i:8566095 original size:19 final size:18
Alignment explanation
Indices: 8566069--8566115 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 18
8566059 ATTTAATTTT
*
8566069 ATTA-AAAATTAGAAAAA
1 ATTATAAAATCAGAAAAA
*
8566086 GATTATAAAAATCATAAAAA
1 -ATTAT-AAAATCAGAAAAA
8566106 ATTATAAAAT
1 ATTATAAAAT
8566116 ATATAGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 9 0.36
19 5 0.20
20 11 0.44
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (18 bp):
ATTATAAAATCAGAAAAA
Found at i:8570287 original size:21 final size:19
Alignment explanation
Indices: 8570263--8570315 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
8570253 TAAAATTGTT
8570263 AAAAATATAAAATGTATTATG
1 AAAAATAT-AAAT-TATTATG
*
8570284 AAAATTATAAATTATTATTG
1 AAAAATATAAATTATTA-TG
* *
8570304 TAAAATTTAAAT
1 AAAAATATAAAT
8570316 AAAAATTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 5 0.19
20 15 0.56
21 7 0.26
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.40
Consensus pattern (19 bp):
AAAAATATAAATTATTATG
Found at i:8570295 original size:20 final size:20
Alignment explanation
Indices: 8570272--8570315 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
8570262 TAAAAATATA
8570272 AAATGTATTA-TG-AAAATTAT
1 AAAT-TATTATTGTAAAATT-T
8570292 AAATTATTATTGTAAAATTT
1 AAATTATTATTGTAAAATTT
8570312 AAAT
1 AAAT
8570316 AAAAATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.23
20 11 0.50
21 6 0.27
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (20 bp):
AAATTATTATTGTAAAATTT
Found at i:8570322 original size:12 final size:12
Alignment explanation
Indices: 8570305--8570342 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
8570295 TTATTATTGT
8570305 AAAATTTAAATA
1 AAAATTTAAATA
*
8570317 AAAATTTAAATT
1 AAAATTTAAATA
*
8570329 AATA-TTAAATA
1 AAAATTTAAATA
8570340 AAA
1 AAA
8570343 TTAATAAAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
11 8 0.36
12 14 0.64
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (12 bp):
AAAATTTAAATA
Found at i:8570368 original size:6 final size:6
Alignment explanation
Indices: 8570352--8570391 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
8570342 ATTAATAAAA
* *
8570352 CCCTC- CCCTCT CCCTCT CCCTCG CCCTCG CCCTCT CCCTC
1 CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT CCCTCT CCCTC
8570392 CATCTTTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.00, C:0.70, G:0.05, T:0.25
Consensus pattern (6 bp):
CCCTCT
Found at i:8570384 original size:18 final size:17
Alignment explanation
Indices: 8570352--8570392 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 17
8570342 ATTAATAAAA
*
8570352 CCCTCCCCTCTCCCTCT
1 CCCTCCCCTCGCCCTCT
8570369 CCCTCGCCCTCGCCCTCT
1 CCCTC-CCCTCGCCCTCT
8570387 CCCTCC
1 CCCTCC
8570393 ATCTTTTCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.00, C:0.71, G:0.05, T:0.24
Consensus pattern (17 bp):
CCCTCCCCTCGCCCTCT
Found at i:8570564 original size:29 final size:30
Alignment explanation
Indices: 8570531--8570597 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
8570521 GATGGAGAGG
8570531 GAGGGAGGT--GAGGGGGAGACGGTGGGGAA
1 GAGGGAGGTAGGA-GGGGAGACGGTGGGGAA
* *
8570560 GAGGGA-GTAGGAGGGGAGATGGTGGGGGA
1 GAGGGAGGTAGGAGGGGAGACGGTGGGGAA
8570589 GAGGTGAGG
1 GAGG-GAGG
8570598 GACAAGGGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 2 0.06
29 25 0.78
30 4 0.12
31 1 0.03
ACGTcount: A:0.24, C:0.01, G:0.66, T:0.09
Consensus pattern (30 bp):
GAGGGAGGTAGGAGGGGAGACGGTGGGGAA
Found at i:8570744 original size:12 final size:11
Alignment explanation
Indices: 8570723--8570774 Score: 50
Period size: 12 Copynumber: 4.5 Consensus size: 11
8570713 ATTTAATTTT
8570723 AAAATTTTTAA
1 AAAATTTTTAA
8570734 AAAACTTTTTAGA
1 AAAA-TTTTTA-A
* *
8570747 ATAATTATTAA
1 AAAATTTTTAA
*
8570758 GAAAATATTTAA
1 -AAAATTTTTAA
8570770 AAAAT
1 AAAAT
8570775 ATCAAAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
11 10 0.30
12 19 0.58
13 4 0.12
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (11 bp):
AAAATTTTTAA
Found at i:8573778 original size:33 final size:32
Alignment explanation
Indices: 8573706--8573782 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 32
8573696 TAAATACATG
* ***
8573706 TGTAAGACCATAGCTGGGCTATGACATTTTAA
1 TGTAAGACCATAACTGGGCTATGACATACAAA
*
8573738 TGATAAGACCATAACTGGGTTATGACACTACAAA
1 TG-TAAGACCATAACTGGGCTATGACA-TACAAA
8573772 TGTAAGACCAT
1 TGTAAGACCAT
8573783 GGCAGGGCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
32 2 0.05
33 31 0.82
34 5 0.13
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.27
Consensus pattern (32 bp):
TGTAAGACCATAACTGGGCTATGACATACAAA
Found at i:8582317 original size:42 final size:42
Alignment explanation
Indices: 8582258--8582380 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 42
8582248 AACCCTAATA
* * * *
8582258 GGTTTCCGTTTAGCTCTTTTGAGCTTCAGTTTAACCTTTACG
1 GGTTTCCGTTCAGCTCTTATAAGCTTCAGTTCAACCTTTACG
* *
8582300 GGTTTCCGTTCAGCTCTTATAAGCTTCCGTTCAACCTTTATG
1 GGTTTCCGTTCAGCTCTTATAAGCTTCAGTTCAACCTTTACG
* * * ** * *
8582342 GGTTTCTGTTTAGCACTTATGTGCTTCTGTGCAACCTTT
1 GGTTTCCGTTCAGCTCTTATAAGCTTCAGTTCAACCTTT
8582381 GGGCTCCTGA
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.15, C:0.23, G:0.19, T:0.44
Consensus pattern (42 bp):
GGTTTCCGTTCAGCTCTTATAAGCTTCAGTTCAACCTTTACG
Found at i:8589460 original size:14 final size:14
Alignment explanation
Indices: 8589438--8589495 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
8589428 ATATGAAAAT
* *
8589438 TAAAAATATGTATA
1 TAAAAATATATAGA
*
8589452 TAAAGATATATAGA
1 TAAAAATATATAGA
*
8589466 TAAATATATA-AGA
1 TAAAAATATATAGA
*
8589479 TATAAAGTATATAGA
1 TA-AAAATATATAGA
8589494 TA
1 TA
8589496 TGAAAAAGGT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
13 5 0.14
14 26 0.72
15 5 0.14
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (14 bp):
TAAAAATATATAGA
Found at i:8590326 original size:25 final size:25
Alignment explanation
Indices: 8590297--8590362 Score: 123
Period size: 25 Copynumber: 2.6 Consensus size: 25
8590287 GAATCAGCCT
*
8590297 TTAAACGACGTCGTTTGATGGGCAC
1 TTAAACGACGTCGTTTGAAGGGCAC
8590322 TTAAACGACGTCGTTTGAAGGGCAC
1 TTAAACGACGTCGTTTGAAGGGCAC
8590347 TTAAACGACGTCGTTT
1 TTAAACGACGTCGTTT
8590363 ATGAATGGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (25 bp):
TTAAACGACGTCGTTTGAAGGGCAC
Found at i:8605572 original size:9 final size:9
Alignment explanation
Indices: 8605546--8605579 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
8605536 TAATGCTAAT
*
8605546 GCTGGCATG
1 GCTGGCTTG
8605555 GCATGGCTTG
1 GC-TGGCTTG
8605565 GCTGGCTTG
1 GCTGGCTTG
8605574 GCTGGC
1 GCTGGC
8605580 ATGGAGTGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.06, C:0.24, G:0.44, T:0.26
Consensus pattern (9 bp):
GCTGGCTTG
Found at i:8613319 original size:33 final size:33
Alignment explanation
Indices: 8613277--8613341 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
8613267 GTATTATTAT
*
8613277 GTTTAGTTGGTGCTTGGGTTAGCTTTAGATGAA
1 GTTTAGTTGGTGCATGGGTTAGCTTTAGATGAA
8613310 GTTTAGTTGGTGCATGGGTTAGCTTTAGATGA
1 GTTTAGTTGGTGCATGGGTTAGCTTTAGATGA
8613342 TATATATTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.18, C:0.06, G:0.34, T:0.42
Consensus pattern (33 bp):
GTTTAGTTGGTGCATGGGTTAGCTTTAGATGAA
Found at i:8617758 original size:13 final size:13
Alignment explanation
Indices: 8617740--8617764 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8617730 ACCATATCAA
8617740 TAAAACACATAAT
1 TAAAACACATAAT
8617753 TAAAACACATAA
1 TAAAACACATAA
8617765 CTAATTTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.00, T:0.20
Consensus pattern (13 bp):
TAAAACACATAAT
Found at i:8618522 original size:48 final size:48
Alignment explanation
Indices: 8618469--8618719 Score: 362
Period size: 48 Copynumber: 5.2 Consensus size: 48
8618459 AAAAACATTC
* *
8618469 GGACAGCATTGATTTG-TACAAAAATGGACAGCATTTAAGCACCAATTT
1 GGACAGCATTAATATGCTA-AAAAATGGACAGCATTTAAGCACCAATTT
* *
8618517 GGACAGCATTAATATACTAAAAAATGGACAGCAATTAAGCATCC-ATTT
1 GGACAGCATTAATATGCTAAAAAATGGACAGCATTTAAGCA-CCAATTT
*
8618565 GGACAGCATTAATATGCTAAAAAAAATGGACAGCATTTAAGCACTAATTT
1 GGACAGCATTAATATGCT--AAAAAATGGACAGCATTTAAGCACCAATTT
* *
8618615 GGACAACATTAATATGCTAAAAAATGGACAGCATTTAAGCACTAATTT
1 GGACAGCATTAATATGCTAAAAAATGGACAGCATTTAAGCACCAATTT
* *
8618663 GGACAGCATTAATATGCTAAAAAATGGACAGCAATTAAACACCAATTT
1 GGACAGCATTAATATGCTAAAAAATGGACAGCATTTAAGCACCAATTT
*
8618711 AGACAGCAT
1 GGACAGCAT
8618720 CTTATCATCA
Statistics
Matches: 185, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
48 137 0.74
49 5 0.03
50 43 0.23
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (48 bp):
GGACAGCATTAATATGCTAAAAAATGGACAGCATTTAAGCACCAATTT
Found at i:8618600 original size:98 final size:96
Alignment explanation
Indices: 8618469--8618719 Score: 362
Period size: 98 Copynumber: 2.6 Consensus size: 96
8618459 AAAAACATTC
* *
8618469 GGACAGCATTGATTTG-TACAAAAATGGACAGCATTTAAGCACCAATTTGGACAGCATTAATATA
1 GGACAGCATTAATATGCTA-AAAAATGGACAGCATTTAAGCACCAATTTGGACAGCATTAATATA
*
8618533 CTAAAAAATGGACAGCAATTAAGCA-TCCATTT
65 CTAAAAAATGGACAGCAATTAAGCACT-AATTT
* *
8618565 GGACAGCATTAATATGCTAAAAAAAATGGACAGCATTTAAGCACTAATTTGGACAACATTAATAT
1 GGACAGCATTAATATGCT--AAAAAATGGACAGCATTTAAGCACCAATTTGGACAGCATTAATAT
* *
8618630 GCTAAAAAATGGACAGCATTTAAGCACTAATTT
64 ACTAAAAAATGGACAGCAATTAAGCACTAATTT
* * *
8618663 GGACAGCATTAATATGCTAAAAAATGGACAGCAATTAAACACCAATTTAGACAGCAT
1 GGACAGCATTAATATGCTAAAAAATGGACAGCATTTAAGCACCAATTTGGACAGCAT
8618720 CTTATCATCA
Statistics
Matches: 139, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
96 48 0.35
97 1 0.01
98 88 0.63
99 2 0.01
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (96 bp):
GGACAGCATTAATATGCTAAAAAATGGACAGCATTTAAGCACCAATTTGGACAGCATTAATATAC
TAAAAAATGGACAGCAATTAAGCACTAATTT
Found at i:8619362 original size:42 final size:43
Alignment explanation
Indices: 8619269--8619380 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 43
8619259 CAATGTCATA
* ** * * *
8619269 TCCCAGATATGGTCTTACATGTTATAATATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGAAATCATATATCAATGCCAATG
* *
8619312 TCCTAGACAGGGTCTTACATGAAATCATATA-CAATGCCAATG
1 TCCCAGACATGGTCTTACATGAAATCATATATCAATGCCAATG
* *
8619354 TCCCAGACATTGTCTTACACGAAATCA
1 TCCCAGACATGGTCTTACATGAAATCA
8619381 CACCTCGGAA
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
42 32 0.56
43 25 0.44
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.29
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGAAATCATATATCAATGCCAATG
Found at i:8620731 original size:17 final size:17
Alignment explanation
Indices: 8620678--8620731 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
8620668 CAGTTTCAAG
*
8620678 AATTATAATATTTGTGTG
1 AATT-TAATATTTGTGTT
*
8620696 AATTTAATCATTT-TTTT
1 AATTTAAT-ATTTGTGTT
*
8620713 AATTTCATATTTGTGTT
1 AATTTAATATTTGTGTT
8620730 AA
1 AA
8620732 AAATACCTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
16 4 0.13
17 18 0.60
18 8 0.27
ACGTcount: A:0.31, C:0.04, G:0.09, T:0.56
Consensus pattern (17 bp):
AATTTAATATTTGTGTT
Found at i:8623650 original size:40 final size:40
Alignment explanation
Indices: 8623552--8623814 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
8623542 TCCTCGTTCA
* * * ** *
8623552 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
8623591 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
8623631 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
8623671 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
8623711 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
8623751 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
8623791 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
8623815 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:8655474 original size:24 final size:24
Alignment explanation
Indices: 8655446--8655492 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
8655436 AATATCAACT
* *
8655446 ATTCACTATATCAGCATCGAATCA
1 ATTCACTATATCAACATAGAATCA
*
8655470 ATTCATTATATCAACATAGAATC
1 ATTCACTATATCAACATAGAATC
8655493 GGTCCATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.40, C:0.21, G:0.06, T:0.32
Consensus pattern (24 bp):
ATTCACTATATCAACATAGAATCA
Found at i:8682746 original size:16 final size:16
Alignment explanation
Indices: 8682722--8682769 Score: 69
Period size: 16 Copynumber: 3.0 Consensus size: 16
8682712 TTTGGTTCGC
* *
8682722 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
*
8682738 TGTAATGGAATAGAGA
1 TGTAATGGAATAGAGG
8682754 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
8682770 CATAATAGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:8682821 original size:45 final size:44
Alignment explanation
Indices: 8682753--8682844 Score: 132
Period size: 45 Copynumber: 2.1 Consensus size: 44
8682743 TGGAATAGAG
8682753 ATGTAATGGAATAGAGGCATAATAGCAAATCAAT-TGTTTGGTTGA
1 ATGTAATGGAATAGAGGCATAATAG-AAATC-ATGTGTTTGGTTGA
* * *
8682798 ATGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGA
1 ATGTAATGGAATAGAGGCATAATAGAAATCATGTGTTTGGTTGA
8682842 ATG
1 ATG
8682845 GAATAGAGGT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 18 0.42
45 24 0.56
ACGTcount: A:0.34, C:0.05, G:0.27, T:0.34
Consensus pattern (44 bp):
ATGTAATGGAATAGAGGCATAATAGAAATCATGTGTTTGGTTGA
Found at i:8683017 original size:25 final size:25
Alignment explanation
Indices: 8682985--8683039 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
8682975 TAATTTAATC
*
8682985 ATAT-TTAAACATAATTATTATT-AA
1 ATATATTAAACAT-ATTATAATTAAA
*
8683009 ATATATTAAATATATTATAATTAAA
1 ATATATTAAACATATTATAATTAAA
8683034 ATATAT
1 ATATAT
8683040 AATTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATATATTAAACATATTATAATTAAA
Found at i:8683243 original size:26 final size:28
Alignment explanation
Indices: 8683214--8683274 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
8683204 TATGAATTTG
*
8683214 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
8683240 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
8683268 TAAAATT
1 TATAATT
8683275 ATTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:8683276 original size:91 final size:89
Alignment explanation
Indices: 8683180--8683396 Score: 290
Period size: 91 Copynumber: 2.4 Consensus size: 89
8683170 AATTTAAAAT
* * * *
8683180 AATTATAACTAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAA
1 AATTATAA-TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
8683245 TTTAATAATAATATATAATTTCATAA
64 TTTAATAATAATATATAATTTCATAA
* *
8683271 AATTATTGATAATAATTTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
1 AATTA-TAATAATAA-ATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAA
*
8683336 TTTAATAATGATATATAATTTCATAA
64 TTTAATAATAATATATAATTTCATAA
* *
8683362 AATTCTTAATAATAAAATGTTATTATATGAATTTA
1 AATT-ATAATAAT-AAAT-TTCTTATATGAATTTA
8683397 CTAAAATCAA
Statistics
Matches: 110, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
91 89 0.81
92 21 0.19
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (89 bp):
AATTATAATAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATT
TAATAATAATATATAATTTCATAA
Found at i:8683277 original size:44 final size:42
Alignment explanation
Indices: 8683214--8683356 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 42
8683204 TATGAATTTG
8683214 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTATTATTA-ATATAATTTAATAAT-ATA
* ** *
8683258 TATAATTTCATAA-AATTATTGA-TAATAATTTTTCTTATATGAATTTA
1 TATAATTT-AAAATAATTATT-ATTAAT-A-TAAT-TTA-AT-AATATA
* *
8683305 TACAATTTAAAATAATTAATATTAAATATAATTTAATAATGATA
1 TATAATTTAAAATAATTATTATT-AATATAATTTAATAAT-ATA
8683349 TATAATTT
1 TATAATTT
8683357 CATAAAATTC
Statistics
Matches: 77, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
43 5 0.06
44 29 0.38
45 9 0.12
46 9 0.12
47 19 0.25
48 6 0.08
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (42 bp):
TATAATTTAAAATAATTATTATTAATATAATTTAATAATATA
Found at i:8683371 original size:47 final size:47
Alignment explanation
Indices: 8683221--8683377 Score: 128
Period size: 47 Copynumber: 3.4 Consensus size: 47
8683211 TTGTATAATT
* * * * *
8683221 TAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
* ** * *
8683268 TAAAATTATTGATAAT-AAT-T--TTTCTTATATGAATTTATACAATT--
1 TAAAATTATTAATAATAAATATAATTTAATA-ATG-ATATATA-ATTTCA
* *
8683312 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
*
8683359 TAAAATTCTTAATAATAAA
1 TAAAATTATTAATAATAAA
8683378 ATGTTATTAT
Statistics
Matches: 81, Mismatches: 20, Indels: 18
0.68 0.17 0.15
Matches are distributed among these distances:
43 5 0.06
44 15 0.19
45 13 0.16
46 12 0.15
47 31 0.38
48 5 0.06
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.45
Consensus pattern (47 bp):
TAAAATTATTAATAATAAATATAATTTAATAATGATATATAATTTCA
Found at i:8687030 original size:25 final size:25
Alignment explanation
Indices: 8687002--8687124 Score: 132
Period size: 25 Copynumber: 5.1 Consensus size: 25
8686992 TTAATAAAAT
8687002 ATTAAAGTCCTTATTTTAATTATTG
1 ATTAAAGTCCTTATTTTAATTATTG
* * *
8687027 ATT--AGTCTTTATTTTAATAAAAT-
1 ATTAAAGTCCTTATTTTAAT-TATTG
*
8687050 ATTAAAATCCTTATTTTAATTATTG
1 ATTAAAGTCCTTATTTTAATTATTG
* *
8687075 ATT--AGTCCTTATTTTAATAAAAT-
1 ATTAAAGTCCTTATTTTAAT-TATTG
8687098 ATTAAAGTCCTTATTTTAATTATTG
1 ATTAAAGTCCTTATTTTAATTATTG
8687123 AT
1 AT
8687125 GCATTTTTTT
Statistics
Matches: 78, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
23 34 0.44
24 8 0.10
25 36 0.46
ACGTcount: A:0.36, C:0.07, G:0.06, T:0.51
Consensus pattern (25 bp):
ATTAAAGTCCTTATTTTAATTATTG
Found at i:8687038 original size:23 final size:24
Alignment explanation
Indices: 8687006--8687124 Score: 120
Period size: 23 Copynumber: 5.0 Consensus size: 24
8686996 TAAAATATTA
8687006 AAGTCCTTATTTTAATTATTGATT
1 AAGTCCTTATTTTAATTATTGATT
* * *
8687030 -AGTCTTTATTTTAATAAAAT-ATT
1 AAGTCCTTATTTTAAT-TATTGATT
*
8687053 AAAATCCTTATTTTAATTATTGATT
1 -AAGTCCTTATTTTAATTATTGATT
* *
8687078 -AGTCCTTATTTTAATAAAAT-ATT
1 AAGTCCTTATTTTAAT-TATTGATT
8687101 AAAGTCCTTATTTTAATTATTGAT
1 -AAGTCCTTATTTTAATTATTGAT
8687125 GCATTTTTTT
Statistics
Matches: 75, Mismatches: 12, Indels: 15
0.74 0.12 0.15
Matches are distributed among these distances:
23 34 0.45
24 8 0.11
25 33 0.44
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (24 bp):
AAGTCCTTATTTTAATTATTGATT
Found at i:8687042 original size:48 final size:48
Alignment explanation
Indices: 8686990--8687124 Score: 252
Period size: 48 Copynumber: 2.8 Consensus size: 48
8686980 ATTTCTTGAT
*
8686990 TTTTAATAAAATATTAAAGTCCTTATTTTAATTATTGATTAGTCTTTA
1 TTTTAATAAAATATTAAAGTCCTTATTTTAATTATTGATTAGTCCTTA
*
8687038 TTTTAATAAAATATTAAAATCCTTATTTTAATTATTGATTAGTCCTTA
1 TTTTAATAAAATATTAAAGTCCTTATTTTAATTATTGATTAGTCCTTA
8687086 TTTTAATAAAATATTAAAGTCCTTATTTTAATTATTGAT
1 TTTTAATAAAATATTAAAGTCCTTATTTTAATTATTGAT
8687125 GCATTTTTTT
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (48 bp):
TTTTAATAAAATATTAAAGTCCTTATTTTAATTATTGATTAGTCCTTA
Found at i:8689130 original size:17 final size:17
Alignment explanation
Indices: 8689104--8689141 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
8689094 TGACTCAAAG
8689104 GAAAAAAAACAGCAACA
1 GAAAAAAAACAGCAACA
* *
8689121 GAAAATAAACAGCAATA
1 GAAAAAAAACAGCAACA
8689138 GAAA
1 GAAA
8689142 CATGCAATCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.68, C:0.13, G:0.13, T:0.05
Consensus pattern (17 bp):
GAAAAAAAACAGCAACA
Found at i:8692945 original size:42 final size:41
Alignment explanation
Indices: 8692897--8693015 Score: 148
Period size: 42 Copynumber: 2.8 Consensus size: 41
8692887 TATGAGTTTT
* *
8692897 AGTTTAATCCTTATGGGTTTCAGTTCAGCTCTTTTAAGCTTC
1 AGTTTAACCCTTATGGGTTTC-GTTCAGCTCTTATAAGCTTC
*
8692939 AGTTTAACCCTTATGGGTTTTCGTTCAGCTCTTATGAGCTTC
1 AGTTTAACCCTTATGGG-TTTCGTTCAGCTCTTATAAGCTTC
* * * *
8692981 CGTTTAACCCTTACGGGTTTCCGTTTAGCACTTAT
1 AGTTTAACCCTTATGGGTTT-CGTTCAGCTCTTAT
8693016 TTTCTTCTGT
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
41 3 0.04
42 61 0.90
43 4 0.06
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.43
Consensus pattern (41 bp):
AGTTTAACCCTTATGGGTTTCGTTCAGCTCTTATAAGCTTC
Found at i:8692984 original size:21 final size:21
Alignment explanation
Indices: 8692919--8692984 Score: 51
Period size: 21 Copynumber: 3.1 Consensus size: 21
8692909 ATGGGTTTCA
* * *
8692919 GTTCAGCTCTTTTAAGCTTCA
1 GTTCAGCTCTTATGAGCTTCC
* * * * * *
8692940 GTTTAACCCTTATGGGTTTTC
1 GTTCAGCTCTTATGAGCTTCC
8692961 GTTCAGCTCTTATGAGCTTCC
1 GTTCAGCTCTTATGAGCTTCC
8692982 GTT
1 GTT
8692985 TAACCCTTAC
Statistics
Matches: 30, Mismatches: 15, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.44
Consensus pattern (21 bp):
GTTCAGCTCTTATGAGCTTCC
Found at i:8692993 original size:21 final size:21
Alignment explanation
Indices: 8692933--8693007 Score: 60
Period size: 21 Copynumber: 3.6 Consensus size: 21
8692923 AGCTCTTTTA
*
8692933 AGCTTCAGTTTAACCCTTATG
1 AGCTTCCGTTTAACCCTTATG
* * * * * *
8692954 GGTTTTCGTTCAGCTCTTATG
1 AGCTTCCGTTTAACCCTTATG
*
8692975 AGCTTCCGTTTAACCCTTACG
1 AGCTTCCGTTTAACCCTTATG
* *
8692996 GGTTTCCGTTTA
1 AGCTTCCGTTTA
8693008 GCACTTATTT
Statistics
Matches: 38, Mismatches: 16, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.16, C:0.24, G:0.19, T:0.41
Consensus pattern (21 bp):
AGCTTCCGTTTAACCCTTATG
Found at i:8694644 original size:75 final size:75
Alignment explanation
Indices: 8694563--8694837 Score: 550
Period size: 75 Copynumber: 3.7 Consensus size: 75
8694553 AAATGTGGTT
8694563 TTCTCAAAATAGAAATGAAAATGAGAAATGAATAAGGAATAAGGAATTCTAAAATTTTAAATAAG
1 TTCTCAAAATAGAAATGAAAATGAGAAATGAATAAGGAATAAGGAATTCTAAAATTTTAAATAAG
8694628 GAATAAGGAA
66 GAATAAGGAA
8694638 TTCTCAAAATAGAAATGAAAATGAGAAATGAATAAGGAATAAGGAATTCTAAAATTTTAAATAAG
1 TTCTCAAAATAGAAATGAAAATGAGAAATGAATAAGGAATAAGGAATTCTAAAATTTTAAATAAG
8694703 GAATAAGGAA
66 GAATAAGGAA
8694713 TTCTCAAAATAGAAATGAAAATGAGAAATGAATAAGGAATAAGGAATTCTAAAATTTTAAATAAG
1 TTCTCAAAATAGAAATGAAAATGAGAAATGAATAAGGAATAAGGAATTCTAAAATTTTAAATAAG
8694778 GAATAAGGAA
66 GAATAAGGAA
8694788 TTCTCAAAATAGAAATGAAAATGAGAAATGAATAAGGAATAAGGAATTCT
1 TTCTCAAAATAGAAATGAAAATGAGAAATGAATAAGGAATAAGGAATTCT
8694838 CTAAATAGAA
Statistics
Matches: 200, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 200 1.00
ACGTcount: A:0.54, C:0.04, G:0.17, T:0.24
Consensus pattern (75 bp):
TTCTCAAAATAGAAATGAAAATGAGAAATGAATAAGGAATAAGGAATTCTAAAATTTTAAATAAG
GAATAAGGAA
Found at i:8694653 original size:29 final size:29
Alignment explanation
Indices: 8694593--8694653 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
8694583 ATGAGAAATG
**
8694593 AATAAGGAATAAGGAATTCTAAAATTTTA
1 AATAAGGAATAAGGAATTCTAAAATTAGA
8694622 AATAAGGAATAAGGAATTCTCAAAA-TAGA
1 AATAAGGAATAAGGAATTCT-AAAATTAGA
8694651 AAT
1 AAT
8694654 GAAAATGAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 25 0.86
30 4 0.14
ACGTcount: A:0.54, C:0.05, G:0.15, T:0.26
Consensus pattern (29 bp):
AATAAGGAATAAGGAATTCTAAAATTAGA
Found at i:8694728 original size:29 final size:29
Alignment explanation
Indices: 8694668--8694728 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
8694658 ATGAGAAATG
**
8694668 AATAAGGAATAAGGAATTCTAAAATTTTA
1 AATAAGGAATAAGGAATTCTAAAATTAGA
8694697 AATAAGGAATAAGGAATTCTCAAAA-TAGA
1 AATAAGGAATAAGGAATTCT-AAAATTAGA
8694726 AAT
1 AAT
8694729 GAAAATGAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 25 0.86
30 4 0.14
ACGTcount: A:0.54, C:0.05, G:0.15, T:0.26
Consensus pattern (29 bp):
AATAAGGAATAAGGAATTCTAAAATTAGA
Found at i:8694803 original size:29 final size:29
Alignment explanation
Indices: 8694743--8694803 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
8694733 ATGAGAAATG
**
8694743 AATAAGGAATAAGGAATTCTAAAATTTTA
1 AATAAGGAATAAGGAATTCTAAAATTAGA
8694772 AATAAGGAATAAGGAATTCTCAAAA-TAGA
1 AATAAGGAATAAGGAATTCT-AAAATTAGA
8694801 AAT
1 AAT
8694804 GAAAATGAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 25 0.86
30 4 0.14
ACGTcount: A:0.54, C:0.05, G:0.15, T:0.26
Consensus pattern (29 bp):
AATAAGGAATAAGGAATTCTAAAATTAGA
Found at i:8694826 original size:46 final size:46
Alignment explanation
Indices: 8694772--8694862 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
8694762 TAAAATTTTA
8694772 AATAAGGAATAAGGAATTCTCAAAATAGAAATGAAAATGAGAAATG
1 AATAAGGAATAAGGAATTCTCAAAATAGAAATGAAAATGAGAAATG
*
8694818 AATAAGGAATAAGGAATTCTCTAAATAGAAATGAAAATGAGAAAT
1 AATAAGGAATAAGGAATTCTCAAAATAGAAATGAAAATGAGAAAT
8694863 ATTAAATATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.56, C:0.04, G:0.19, T:0.21
Consensus pattern (46 bp):
AATAAGGAATAAGGAATTCTCAAAATAGAAATGAAAATGAGAAATG
Found at i:8697492 original size:5 final size:5
Alignment explanation
Indices: 8697482--8697521 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
8697472 AATTAGCTAT
* * *
8697482 CTCTA CTCTA CTCTA CTCTA CTTTA CTCCA CTCTA ATCTA
1 CTCTA CTCTA CTCTA CTCTA CTCTA CTCTA CTCTA CTCTA
8697522 TTGCAAGATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.23, C:0.38, G:0.00, T:0.40
Consensus pattern (5 bp):
CTCTA
Found at i:8702624 original size:30 final size:32
Alignment explanation
Indices: 8702585--8702644 Score: 88
Period size: 30 Copynumber: 1.9 Consensus size: 32
8702575 TTATAAAAAA
* *
8702585 AATTATTTTAATTTTTATATTTA-ATTTTTTT
1 AATTATTTTAATCTTTAAATTTATATTTTTTT
8702616 AATT-TTTTAATCTTTAAATTTATATTTTT
1 AATTATTTTAATCTTTAAATTTATATTTTT
8702645 CTATCAAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 16 0.62
31 10 0.38
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (32 bp):
AATTATTTTAATCTTTAAATTTATATTTTTTT
Found at i:8715838 original size:24 final size:24
Alignment explanation
Indices: 8715811--8715896 Score: 66
Period size: 24 Copynumber: 3.5 Consensus size: 24
8715801 TAACAAGAAA
8715811 CTCATAAGAGCCATAATCGGGAAG
1 CTCATAAGAGCCATAATCGGGAAG
** * *
8715835 CTCATGCGAGTCAATAA-CGGGTAG
1 CTCATAAGAG-CCATAATCGGGAAG
** *
8715859 CTCCGAAGAGCCATTAATCAGGAAG
1 CTCATAAGAGCCA-TAATCGGGAAG
*
8715884 CTCAAAAAGAGCC
1 CTC-ATAAGAGCC
8715897 TTTAATTAGG
Statistics
Matches: 45, Mismatches: 13, Indels: 6
0.70 0.20 0.09
Matches are distributed among these distances:
23 2 0.04
24 23 0.51
25 13 0.29
26 7 0.16
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.16
Consensus pattern (24 bp):
CTCATAAGAGCCATAATCGGGAAG
Found at i:8715894 original size:26 final size:26
Alignment explanation
Indices: 8715864--8715920 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
8715854 GGTAGCTCCG
8715864 AAGAGCCATTAATCAGGAAGCTCAAA
1 AAGAGCCATTAATCAGGAAGCTCAAA
* * *
8715890 AAGAGCCTTTAATTAGGAAGCTCACA
1 AAGAGCCATTAATCAGGAAGCTCAAA
8715916 AAGAG
1 AAGAG
8715921 TCATATATCG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.18
Consensus pattern (26 bp):
AAGAGCCATTAATCAGGAAGCTCAAA
Found at i:8723106 original size:24 final size:23
Alignment explanation
Indices: 8723079--8723128 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
8723069 TATCAGAAAA
*
8723079 CTCAAGAGAGCTTATATCGGGATG
1 CTCAAGAGAGC-TATAACGGGATG
* *
8723103 CTCATGTGAGCTATAACGGGATG
1 CTCAAGAGAGCTATAACGGGATG
8723126 CTC
1 CTC
8723129 TTACGAGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (23 bp):
CTCAAGAGAGCTATAACGGGATG
Found at i:8739892 original size:49 final size:49
Alignment explanation
Indices: 8739820--8739923 Score: 172
Period size: 49 Copynumber: 2.1 Consensus size: 49
8739810 GAAAAAAAAC
* * * *
8739820 AAATTAAAATTAAGTTTAATATCATGAATCAAAAGGTGAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTGTATA
8739869 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTGTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTGTATA
8739918 AAATTA
1 AAATTA
8739924 TAACACATGA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.31
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAATATCATGAATCAAAAGCTCAACACTGTATA
Found at i:8750673 original size:37 final size:37
Alignment explanation
Indices: 8750626--8750723 Score: 108
Period size: 37 Copynumber: 2.6 Consensus size: 37
8750616 TTGTTAAATG
*
8750626 AGTCATAAAAGTAGGTTTGTTTCTTAT-GTAAAAGTATA
1 AGTCA-AAAAGTAGGTTTGTTT-TTATCATAAAAGTATA
* ** *
8750664 AGTCAAAAAGCAGGTTTGTTTGAATCATAAAAGTATG
1 AGTCAAAAAGTAGGTTTGTTTTTATCATAAAAGTATA
**
8750701 AGTCAAAAAGTATATTTGTTTTT
1 AGTCAAAAAGTAGGTTTGTTTTT
8750724 TATACAAGTC
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
36 2 0.04
37 42 0.86
38 5 0.10
ACGTcount: A:0.38, C:0.06, G:0.18, T:0.38
Consensus pattern (37 bp):
AGTCAAAAAGTAGGTTTGTTTTTATCATAAAAGTATA
Found at i:8757767 original size:3 final size:3
Alignment explanation
Indices: 8757759--8757808 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
8757749 TTTCAAAGTA
* * * * *
8757759 AAT AAT AAT AAT AAT AAT AAT AAT AAT TAT TAT TAT TAT TAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8757807 AA
1 AA
8757809 GATACTTTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (3 bp):
AAT
Found at i:8757953 original size:17 final size:16
Alignment explanation
Indices: 8757919--8757952 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
8757909 CTTCAAAAAT
*
8757919 TATTTTAAAATTATTA
1 TATTTTAAAAATATTA
8757935 TATTTTAAAAATA-TA
1 TATTTTAAAAATATTA
8757950 TAT
1 TAT
8757953 AAATTTTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTTTAAAAATATTA
Found at i:8757978 original size:20 final size:21
Alignment explanation
Indices: 8757955--8758001 Score: 71
Period size: 19 Copynumber: 2.3 Consensus size: 21
8757945 ATATATATAA
*
8757955 ATTTTGAAATTTTTATAAA-T
1 ATTTTGAAATTTTTAAAAATT
8757975 ATTTT-AAATTTTTAAAAATT
1 ATTTTGAAATTTTTAAAAATT
8757995 ATTTTGA
1 ATTTTGA
8758002 TTTTTTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 12 0.50
20 11 0.46
21 1 0.04
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.55
Consensus pattern (21 bp):
ATTTTGAAATTTTTAAAAATT
Found at i:8762445 original size:114 final size:114
Alignment explanation
Indices: 8762261--8762817 Score: 529
Period size: 114 Copynumber: 4.9 Consensus size: 114
8762251 AAAAAAAGCA
** * * * * * *
8762261 TTAGCGGCGTTTTCCATAAAGCGCCGC-AAAATACCTAAGCCCAACGACACCGTTTCCCGAGCCT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
*
8762325 TAGGGGATTTAGCTGCGATTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
66 TCGGGGATTTAGCTGCGATTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* * * * *
8762374 TTCGTGGCGTTTTCGAGAAAGCGCCACAAAAAAACCAAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
*
8762439 TCGGGGATTTAG-TGGCG-TTATTAAGTAAGCGCCGCTAATGCTCAGGGCT
66 TCGGGGATTTAGCT-GCGATT-TTAAGAAAGCGCCGCTAATGCTCAGGGCT
** * * * *
8762488 TTAGCATCGTTTTTGAGAAAGTGCCACAAAAAAACC-AGAGCCCAATGACGCCGTTTTTTGAGCT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTA-AGCCCAACGACGCCGTTTTCTGAGCT
* * * *
8762552 TTCGGGGATTTAG-TGGCGTTTTTAAGTAAGTGCCGCTAATGCTCGGGGCT
65 TTCGGGGATTTAGCT-GCGATTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* * *
8762602 TTAGCGGCGTTTTTGAGAAACCGCCGCAACAAAAA-CTAAGTCCAACGACACCGTTTTCTGA-CA
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAA-AAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC-
* * * * * *
8762665 ATTCGTGGGCTTTAGCGGC-ATTTTTAAGAATGCGCCGCTAATGCTTAGGTCT
64 TTTCG-GGGATTTAGCTGCGA-TTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* * * * * * * *
8762717 TTAGCAGCGTTTTTGTTG-AAGCGCCGCAAAAAAAACCTAAGCTCAACGGCGTCATTTTCTAAAC
1 TTAGCGGCGTTTTTG-AGAAAGCGCCGC-AAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC
** * * * *
8762781 TTTTAGGGCTTTAGCGGCGTTTTTAAAAAAGCGCCGC
64 TTTCGGGGATTTAGCTGCGATTTTAAGAAAGCGCCGC
8762818 AAAAACCTTT
Statistics
Matches: 370, Mismatches: 58, Indels: 30
0.81 0.13 0.07
Matches are distributed among these distances:
113 27 0.07
114 220 0.59
115 98 0.26
116 24 0.06
117 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (114 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
TCGGGGATTTAGCTGCGATTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:8762987 original size:19 final size:19
Alignment explanation
Indices: 8762963--8763016 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
8762953 ATTCAATAGG
8762963 TTACTATTTAATTTGTTAT
1 TTACTATTTAATTTGTTAT
* *
8762982 TTACTATTTAGTTTTTTTAT
1 TTACTATTTA-ATTTGTTAT
8763002 TTA-TA-TTAATTTGTT
1 TTACTATTTAATTTGTT
8763017 TACTTTCCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 5 0.17
18 3 0.10
19 12 0.40
20 10 0.33
ACGTcount: A:0.24, C:0.04, G:0.06, T:0.67
Consensus pattern (19 bp):
TTACTATTTAATTTGTTAT
Found at i:8765430 original size:65 final size:66
Alignment explanation
Indices: 8765348--8765481 Score: 198
Period size: 65 Copynumber: 2.0 Consensus size: 66
8765338 GACCACAGTT
* * * *
8765348 GAGGTTCAAAGGAAATATGAAGAACTCCAACTACAA-TTAGAGCAGAGGCTGCAGCGAGAGAAGC
1 GAGGCTCAAAAGAAATATGAAGAACTCCAACTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
8765412 A
66 A
* * *
8765413 GAGGCTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGATGCGGCATCGAGAGAAGC
1 GAGGCTCAAAAGAAATATGAAGAACTCCAACTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
8765478 A
66 A
8765479 GAG
1 GAG
8765482 CAGAGCAGAA
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
65 33 0.54
66 28 0.46
ACGTcount: A:0.42, C:0.18, G:0.27, T:0.13
Consensus pattern (66 bp):
GAGGCTCAAAAGAAATATGAAGAACTCCAACTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
A
Found at i:8765504 original size:66 final size:65
Alignment explanation
Indices: 8765354--8765508 Score: 168
Period size: 66 Copynumber: 2.4 Consensus size: 65
8765344 AGTTGAGGTT
* * * * *
8765354 CAAAGGAAATATGAAGAACTCCAACTACAATTAGAGCAGAGGCTGCAGCGAGAGAAGCAGAGGCT
1 CAAAAGAAATACGAAGAACTCCAACTACAATTAAAGCAGAGGCGGCAGCGAGAGAAGCAGAGGCA
* * * *
8765419 CAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGATGCGGCATCGAGAGAAGCAGA-GC
1 CAAAAGAAATACGAAGAACTCCAACTACAA-TTAAAGCAGAGGCGGCAGCGAGAGAAGCAGAGGC
8765483 A
65 A
* ** *
8765484 GAGCAGAAAGTACGACGAACTCCAA
1 CAAAAGAAA-TACGAAGAACTCCAA
8765509 TAGCAGCTTC
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
65 36 0.48
66 39 0.52
ACGTcount: A:0.43, C:0.20, G:0.25, T:0.12
Consensus pattern (65 bp):
CAAAAGAAATACGAAGAACTCCAACTACAATTAAAGCAGAGGCGGCAGCGAGAGAAGCAGAGGCA
Found at i:8765900 original size:42 final size:42
Alignment explanation
Indices: 8765844--8765956 Score: 138
Period size: 42 Copynumber: 2.7 Consensus size: 42
8765834 GTTTGTGAAG
* * *
8765844 AAAGCGCCGCTAAAGATCATGTTCTTTCGCGGCGTTTTTCTT-
1 AAAGCGCCGCTAAAGAACATGATCTTTAGCGGC-TTTTTCTTC
* * *
8765886 AAAGCGTCGCTAAAGAACATGATCTTTAGCTGCTTTTTTTTC
1 AAAGCGCCGCTAAAGAACATGATCTTTAGCGGCTTTTTCTTC
* *
8765928 TAAGCGCCGCTAAAGAACATGACCTTTAG
1 AAAGCGCCGCTAAAGAACATGATCTTTAG
8765957 TGGCGTTTAT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 7 0.11
42 54 0.89
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (42 bp):
AAAGCGCCGCTAAAGAACATGATCTTTAGCGGCTTTTTCTTC
Found at i:8766569 original size:18 final size:19
Alignment explanation
Indices: 8766546--8766589 Score: 56
Period size: 18 Copynumber: 2.3 Consensus size: 19
8766536 CTAAAACTTT
8766546 ATTTTAATATTT-TTAT-AC
1 ATTTTAAT-TTTATTATCAC
8766564 ATTTTAATTTTATTATGCAC
1 ATTTTAATTTTATTAT-CAC
8766584 ATTTTA
1 ATTTTA
8766590 TTACATCTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.13
18 12 0.52
20 8 0.35
ACGTcount: A:0.32, C:0.07, G:0.02, T:0.59
Consensus pattern (19 bp):
ATTTTAATTTTATTATCAC
Found at i:8767916 original size:51 final size:53
Alignment explanation
Indices: 8767820--8767928 Score: 152
Period size: 51 Copynumber: 2.1 Consensus size: 53
8767810 TAAAAAATTG
*
8767820 TACTTCCCCCAAACCCCAAAAAAAAATTTTCTTTTAGTTTCCCCCATAACTTT
1 TACTTCCCCCAAACCCCAAAAAAAAATTTTCTTTTAGTTTCCCCCAAAACTTT
** *
8767873 TACTT-CCCCAAACCCC-AAAAACTATTTTCTTTTTA-TTTTCCCCAAAACTTT
1 TACTTCCCCCAAACCCCAAAAAAAAATTTTC-TTTTAGTTTCCCCCAAAACTTT
8767924 TACTT
1 TACTT
8767929 TCTTTCAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
51 30 0.59
52 16 0.31
53 5 0.10
ACGTcount: A:0.30, C:0.31, G:0.01, T:0.38
Consensus pattern (53 bp):
TACTTCCCCCAAACCCCAAAAAAAAATTTTCTTTTAGTTTCCCCCAAAACTTT
Found at i:8768008 original size:19 final size:20
Alignment explanation
Indices: 8767967--8768024 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
8767957 GAATTTGTGT
8767967 TTAATATTTACATTATTGAA
1 TTAATATTTACATTATTGAA
8767987 TTAA-ATTTCACATT-TTG--
1 TTAATATTT-ACATTATTGAA
* *
8768004 -TATTATTTATATTATTGAA
1 TTAATATTTACATTATTGAA
8768023 TT
1 TT
8768025 GTTTAATCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
16 6 0.20
17 7 0.23
19 7 0.23
20 10 0.33
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.55
Consensus pattern (20 bp):
TTAATATTTACATTATTGAA
Found at i:8773072 original size:13 final size:14
Alignment explanation
Indices: 8773054--8773085 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
8773044 ACTAAATTCC
8773054 TAAAAA-TAAAATT
1 TAAAAATTAAAATT
8773067 TAAAAATTAAAATT
1 TAAAAATTAAAATT
8773081 TAAAA
1 TAAAA
8773086 TTATGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAAAATTAAAATT
Found at i:8776228 original size:24 final size:24
Alignment explanation
Indices: 8776196--8776242 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
8776186 GTGCTTCCCG
8776196 TTAATTGCTCTTCGGAGCTACCCA
1 TTAATTGCTCTTCGGAGCTACCCA
* *
8776220 TTAATTGCTCTTTGGATCTACCC
1 TTAATTGCTCTTCGGAGCTACCC
8776243 GTTATAGGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.38
Consensus pattern (24 bp):
TTAATTGCTCTTCGGAGCTACCCA
Found at i:8776291 original size:25 final size:24
Alignment explanation
Indices: 8776263--8776322 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
8776253 CTTTGTGAGT
** *
8776263 TTCCCGTTATATTGTTCGAATAAGC
1 TTCCCGTTATAAGGCTC-AATAAGC
* *
8776288 TTCCCGTTACAAGGCTCAATGAGC
1 TTCCCGTTATAAGGCTCAATAAGC
8776312 TTCCCGTTATA
1 TTCCCGTTATA
8776323 GTGCTTGAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
24 16 0.55
25 13 0.45
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (24 bp):
TTCCCGTTATAAGGCTCAATAAGC
Found at i:8776355 original size:150 final size:150
Alignment explanation
Indices: 8776196--8776505 Score: 525
Period size: 150 Copynumber: 2.1 Consensus size: 150
8776186 GTGCTTCCCG
* *
8776196 TTAATTGCTCTTCGGAGCTACCCATTAATTGCTCTTTGGATCTACCCGTTATAGGCTCTTTGTGA
1 TTAAGTGCTCTTCGGAGCTACCCATTAATTGCTCTTTGGAGCTACCCGTTATAGGCTCTTTGTGA
* *
8776261 GTTTCCCGTTATATTGTT-C-GAATAAGCTTCCCGTTACAAGGCTCAATGAGCTTCCCGTTATAG
66 GTTTCCCGTTATATT-TTCCTG-ATAAGCTTCCCGTTACAAGGCTCAATAAGCTTCCCGTTATAA
8776324 TGCTTGAGTGAGAGCTTTCTGT
129 TGCTTGAGTGAGAGCTTTCTGT
**
8776346 TTAAGTGCTCTTCGGAGCTACCTGTTAATTGCTCTTTGGAGCTACCCGTTATAGGCTCTTTGTGA
1 TTAAGTGCTCTTCGGAGCTACCCATTAATTGCTCTTTGGAGCTACCCGTTATAGGCTCTTTGTGA
*
8776411 GTTTCCCGTTATATTTTCCTGATAAGCTTCCCGTTACAAGGCTCAATAAGCTTCCTGTTATAATG
66 GTTTCCCGTTATATTTTCCTGATAAGCTTCCCGTTACAAGGCTCAATAAGCTTCCCGTTATAATG
8776476 CTTGAGTGAGAGCTTTCTGT
131 CTTGAGTGAGAGCTTTCTGT
8776496 TTAAGTGCTC
1 TTAAGTGCTC
8776506 ATAAAAGTAG
Statistics
Matches: 151, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
149 2 0.01
150 148 0.98
151 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (150 bp):
TTAAGTGCTCTTCGGAGCTACCCATTAATTGCTCTTTGGAGCTACCCGTTATAGGCTCTTTGTGA
GTTTCCCGTTATATTTTCCTGATAAGCTTCCCGTTACAAGGCTCAATAAGCTTCCCGTTATAATG
CTTGAGTGAGAGCTTTCTGT
Found at i:8776406 original size:24 final size:25
Alignment explanation
Indices: 8776352--8776424 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 25
8776342 CTGTTTAAGT
* * *
8776352 GCTCTTCGGAGCTACCTGTTA-ATT
1 GCTCTTTGGAGCTACCCGTTATATG
8776376 GCTCTTTGGAGCTACCCGTTATA-G
1 GCTCTTTGGAGCTACCCGTTATATG
* *
8776400 GCTCTTTGTGAGTTTCCCGTTATAT
1 GCTCTTTG-GAGCTACCCGTTATAT
8776425 TTTCCTGATA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 27 0.66
25 14 0.34
ACGTcount: A:0.15, C:0.23, G:0.22, T:0.40
Consensus pattern (25 bp):
GCTCTTTGGAGCTACCCGTTATATG
Found at i:8789648 original size:21 final size:21
Alignment explanation
Indices: 8789622--8789662 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8789612 AGACGAGCAA
* *
8789622 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
8789643 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
8789663 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:8793379 original size:20 final size:22
Alignment explanation
Indices: 8793336--8793380 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
8793326 ATAATTAGTA
*
8793336 TAAAAAATTATTTAAAATAATT
1 TAAAAAATTATTTAAAACAATT
*
8793358 TAAAAAA-T-TTTAAAACACTT
1 TAAAAAATTATTTAAAACAATT
8793378 TAA
1 TAA
8793381 CTAATAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 1 0.05
22 7 0.33
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (22 bp):
TAAAAAATTATTTAAAACAATT
Found at i:8793557 original size:13 final size:13
Alignment explanation
Indices: 8793539--8793572 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8793529 GTGAAAATGT
*
8793539 ATAAATTTTTTAA
1 ATAAATTTTATAA
*
8793552 ATAAATTTTATGA
1 ATAAATTTTATAA
8793565 ATAAATTT
1 ATAAATTT
8793573 AATATTTTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (13 bp):
ATAAATTTTATAA
Found at i:8796891 original size:415 final size:415
Alignment explanation
Indices: 8796121--8796947 Score: 1618
Period size: 415 Copynumber: 2.0 Consensus size: 415
8796111 AAGCCATCTA
*
8796121 CAAACTGCACCATTATAGTCTCTTCATCTTCTCGAACATTTGCTCTATGCATAAGCATCTCCATC
1 CAAACTGCACCATTATAGTCTCTTAATCTTCTCGAACATTTGCTCTATGCATAAGCATCTCCATC
*
8796186 TCCTTAAAGTACTCATCAACAGATCGATTACCTTGAACAATGCGTTGAAGTCTCCATTTAATATC
66 TCCGTAAAGTACTCATCAACAGATCGATTACCTTGAACAATGCGTTGAAGTCTCCATTTAATATC
8796251 TCTATAATAATCAGGTGGGATAAAACGTTTTCGTATGATTTGTGTCAACTCATCCCATATTTCAA
131 TCTATAATAATCAGGTGGGATAAAACGTTTTCGTATGATTTGTGTCAACTCATCCCATATTTCAA
8796316 TTACCCTTTAAAATTTTATTTAACGATCAATTCCAAGTTGAATCCACCAACTCAATGCATAATTT
196 TTACCCTTTAAAATTTTATTTAACGATCAATTCCAAGTTGAATCCACCAACTCAATGCATAATTT
8796381 GAAAATCCAAGGGTCGCAAATGAGACTTTTTCCTCTTCTTGACATTTATAATAACGAAACAAAAG
261 GAAAATCCAAGGGTCGCAAATGAGACTTTTTCCTCTTCTTGACATTTATAATAACGAAACAAAAG
8796446 TTTAAATTTTGATTCCTACTCACAATATGCTTCGAGTTCGTACTTACCTCGGAATGGTGGAAAAT
326 TTTAAATTTTGATTCCTACTCACAATATGCTTCGAGTTCGTACTTACCTCGGAATGGTGGAAAAT
8796511 TGAACTTTGGTTTAGCAAAAAACTG
391 TGAACTTTGGTTTAGCAAAAAACTG
8796536 CAAACTGCACCATTATAGTCTCTTAATCTTCTCGAACATTTGCTCTATGCATAAGCATCTCCATC
1 CAAACTGCACCATTATAGTCTCTTAATCTTCTCGAACATTTGCTCTATGCATAAGCATCTCCATC
8796601 TCCGTAAAGTACTCATCAACAGATCGATTACCTTGAACAATGCGTTGAAGTCTCCATTTAATATC
66 TCCGTAAAGTACTCATCAACAGATCGATTACCTTGAACAATGCGTTGAAGTCTCCATTTAATATC
*
8796666 TCTATAATAATGAGGTGGGATAAAACGTTTTCGTATGATTTGTGTCAACTCATCCCATATTTCAA
131 TCTATAATAATCAGGTGGGATAAAACGTTTTCGTATGATTTGTGTCAACTCATCCCATATTTCAA
*
8796731 TTACCCTTTTAAATTTTATTTAACGATCAATTCCAAGTTGAATCCACCAACTCAATGCATAATTT
196 TTACCCTTTAAAATTTTATTTAACGATCAATTCCAAGTTGAATCCACCAACTCAATGCATAATTT
8796796 GAAAATCCAAGGGTCGCAAATGAGACTTTTTCCTCTTCTTGACATTTATAATAACGAAACAAAAG
261 GAAAATCCAAGGGTCGCAAATGAGACTTTTTCCTCTTCTTGACATTTATAATAACGAAACAAAAG
8796861 TTTAAATTTTGATTCCTACTCACAATATGCTTCGAGTTCGTACTTACCTCGGAATGGTGGAAAAT
326 TTTAAATTTTGATTCCTACTCACAATATGCTTCGAGTTCGTACTTACCTCGGAATGGTGGAAAAT
8796926 TGAACTTTGGTTTAGCAAAAAA
391 TGAACTTTGGTTTAGCAAAAAA
8796948 ATGTTGCCTA
Statistics
Matches: 408, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
415 408 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (415 bp):
CAAACTGCACCATTATAGTCTCTTAATCTTCTCGAACATTTGCTCTATGCATAAGCATCTCCATC
TCCGTAAAGTACTCATCAACAGATCGATTACCTTGAACAATGCGTTGAAGTCTCCATTTAATATC
TCTATAATAATCAGGTGGGATAAAACGTTTTCGTATGATTTGTGTCAACTCATCCCATATTTCAA
TTACCCTTTAAAATTTTATTTAACGATCAATTCCAAGTTGAATCCACCAACTCAATGCATAATTT
GAAAATCCAAGGGTCGCAAATGAGACTTTTTCCTCTTCTTGACATTTATAATAACGAAACAAAAG
TTTAAATTTTGATTCCTACTCACAATATGCTTCGAGTTCGTACTTACCTCGGAATGGTGGAAAAT
TGAACTTTGGTTTAGCAAAAAACTG
Found at i:8798639 original size:25 final size:25
Alignment explanation
Indices: 8798585--8798641 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
8798575 TCAACTCACT
* *
8798585 TGAGATTTCTGTTATACAGCTCGCA
1 TGAGCTTTCTGTTACACAGCTCGCA
8798610 TGAGCTTTCTGTTACACAGCTCGCA
1 TGAGCTTTCTGTTACACAGCTCGCA
8798635 TGAGCTT
1 TGAGCTT
8798642 CTCGATATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (25 bp):
TGAGCTTTCTGTTACACAGCTCGCA
Found at i:8798675 original size:25 final size:25
Alignment explanation
Indices: 8798626--8798681 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
8798616 TTCTGTTACA
*
8798626 CAGCTCGCATGAGCTTCTCGATATT
1 CAGCTCGCATGAGCTTCTCCATATT
*
8798651 TAGCTCGCATGAGCTTC-CCATTATT
1 CAGCTCGCATGAGCTTCTCCA-TATT
8798676 CAGCTC
1 CAGCTC
8798682 AGAGGAGCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 2 0.07
25 25 0.93
ACGTcount: A:0.20, C:0.30, G:0.18, T:0.32
Consensus pattern (25 bp):
CAGCTCGCATGAGCTTCTCCATATT
Done.