Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 28 of 153
Found at i:9799397 original size:21 final size:21
Alignment explanation
Indices: 9799343--9799390 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
9799333 ATAAAAAAAA
*
9799343 TCCTATTATTTTGTTATTGTTT
1 TCCTA-TATTTTATTATTGTTT
*
9799365 TTCTATATTTTATTATTGTTT
1 TCCTATATTTTATTATTGTTT
9799386 TCCTA
1 TCCTA
9799391 CTTTTTACTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.17, C:0.10, G:0.06, T:0.67
Consensus pattern (21 bp):
TCCTATATTTTATTATTGTTT
Found at i:9799438 original size:22 final size:22
Alignment explanation
Indices: 9799385--9799439 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
9799375 TATTATTGTT
* **
9799385 TTCCTACT-TTTTACTATCATT
1 TTCCTACTATTTCACTATCACG
* *
9799406 TTGCTATTATTTCACTATCACG
1 TTCCTACTATTTCACTATCACG
9799428 TTCCTACTATTT
1 TTCCTACTATTT
9799440 TGTTATTAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 6 0.23
22 20 0.77
ACGTcount: A:0.20, C:0.24, G:0.04, T:0.53
Consensus pattern (22 bp):
TTCCTACTATTTCACTATCACG
Found at i:9805876 original size:17 final size:17
Alignment explanation
Indices: 9805843--9805877 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
9805833 AGTCTACAGC
9805843 AATATTAAATATATATA
1 AATATTAAATATATATA
9805860 AATATATAAATAT-TATA
1 AATAT-TAAATATATATA
9805877 A
1 A
9805878 CCTTTTAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AATATTAAATATATATA
Found at i:9806656 original size:41 final size:40
Alignment explanation
Indices: 9806611--9806699 Score: 117
Period size: 41 Copynumber: 2.2 Consensus size: 40
9806601 GGCACTTAGG
*
9806611 CTGCTAGACATATAGTCTAAAATGTA-TCACCGGCATTAAGC
1 CTGCTAGACATAAAGTCT-AAAT-TACTCACCGGCATTAAGC
* *
9806652 CTGCTAGACGTAAAGTCTGAATTACTTCACCGGCATTAAGC
1 CTGCTAGACATAAAGTCTAAATTAC-TCACCGGCATTAAGC
9806693 CTGCTAG
1 CTGCTAG
9806700 GTACATAACC
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
39 2 0.05
40 3 0.07
41 38 0.88
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (40 bp):
CTGCTAGACATAAAGTCTAAATTACTCACCGGCATTAAGC
Found at i:9813270 original size:5 final size:5
Alignment explanation
Indices: 9813260--9813331 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
9813250 TGTTAAAAAA
* *
9813260 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATCATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT AT-ATT
9813306 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
9813332 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 33 0.59
6 10 0.18
7 1 0.02
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:9813313 original size:19 final size:19
Alignment explanation
Indices: 9813289--9813331 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
9813279 ATTATGTTTT
9813289 TATATTATATTATCATTA-A
1 TATATTATATTAT-ATTATA
9813308 TATATTATATTATATTATA
1 TATATTATATTATATTATA
9813327 TATAT
1 TATAT
9813332 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:9813363 original size:17 final size:17
Alignment explanation
Indices: 9813341--9813374 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9813331 TACATAAAAC
*
9813341 AAAAGAAAGAATAGAAA
1 AAAAGAAAGAAAAGAAA
9813358 AAAAGAAAGAAAAGAAA
1 AAAAGAAAGAAAAGAAA
9813375 CAGAATAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (17 bp):
AAAAGAAAGAAAAGAAA
Found at i:9813370 original size:9 final size:9
Alignment explanation
Indices: 9813341--9813374 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
9813331 TACATAAAAC
9813341 AAAAGAAAG
1 AAAAGAAAG
*
9813350 AATAGAAA-
1 AAAAGAAAG
9813358 AAAAGAAAG
1 AAAAGAAAG
9813367 AAAAGAAA
1 AAAAGAAA
9813375 CAGAATAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:9814003 original size:29 final size:30
Alignment explanation
Indices: 9813944--9814001 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
9813934 TCCGAGCCTT
*
9813944 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
9813974 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
9814002 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:9814393 original size:46 final size:44
Alignment explanation
Indices: 9814341--9814426 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
9814331 AGAACAGAAA
*
9814341 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAAGAT
1 TGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAGACAAGAT
*
9814387 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACA
1 TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACA
9814427 GGAATAATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 17 0.45
46 21 0.55
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACAAGAT
Found at i:9814440 original size:44 final size:45
Alignment explanation
Indices: 9814343--9814467 Score: 135
Period size: 44 Copynumber: 2.8 Consensus size: 45
9814333 AACAGAAATG
* * *
9814343 AGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAAGATTG
1 AGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAAGAATA
* *
9814389 AGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATA
1 AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
** * * *
9814433 ATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
9814468 CAGGGTATTG
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 35 0.53
45 1 0.02
46 30 0.45
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (45 bp):
AGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAAGAATA
Found at i:9819271 original size:29 final size:30
Alignment explanation
Indices: 9819212--9819269 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
9819202 TCCGAGCCTT
*
9819212 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
9819242 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
9819270 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:9819499 original size:13 final size:13
Alignment explanation
Indices: 9819481--9819512 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
9819471 TTTCCAGCAA
9819481 TTATGAATTTATT
1 TTATGAATTTATT
9819494 TTATGAATTTATT
1 TTATGAATTTATT
*
9819507 TGATGA
1 TTATGA
9819513 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:9819687 original size:50 final size:50
Alignment explanation
Indices: 9819607--9819791 Score: 361
Period size: 50 Copynumber: 3.7 Consensus size: 50
9819597 ATTTGGGTAA
*
9819607 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
9819657 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
9819707 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
9819757 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGC
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGC
9819792 TTTGGCATGT
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 134 1.00
ACGTcount: A:0.26, C:0.24, G:0.33, T:0.17
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:9831718 original size:24 final size:24
Alignment explanation
Indices: 9831665--9831710 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
9831655 TATTTCTAGA
*
9831665 ATATTTAGTATTTATCAGTATAAT
1 ATATTTAGCATTTATCAGTATAAT
*
9831689 ATATTTAGCATTTATTAGTATA
1 ATATTTAGCATTTATCAGTATA
9831711 GTTTATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (24 bp):
ATATTTAGCATTTATCAGTATAAT
Found at i:9832251 original size:30 final size:30
Alignment explanation
Indices: 9832217--9832278 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 30
9832207 CCTAAACGCA
*
9832217 ATATCGACTCTTCCTAAACTCCTAAACAAG
1 ATATCAACTCTTCCTAAACTCCTAAACAAG
* * * * *
9832247 ATATCAAGTTTTTCTAAACTCCTGAACGAG
1 ATATCAACTCTTCCTAAACTCCTAAACAAG
9832277 AT
1 AT
9832279 GTCGGGTCTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.35, C:0.24, G:0.10, T:0.31
Consensus pattern (30 bp):
ATATCAACTCTTCCTAAACTCCTAAACAAG
Found at i:9841700 original size:23 final size:23
Alignment explanation
Indices: 9841674--9841724 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
9841664 TAATTTTTAA
*
9841674 ATTTAGGATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
9841697 ATTTAGAATTATTTAGTGATAAT
1 ATTTAGAATTATTTAGTGATAAT
9841720 ATTTA
1 ATTTA
9841725 AGAAAAATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (23 bp):
ATTTAGAATTATTTAGTGATAAT
Found at i:9841701 original size:13 final size:13
Alignment explanation
Indices: 9841683--9841724 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
9841673 AATTTAGGAT
9841683 TATTTAGTGATAA
1 TATTTAGTGATAA
*
9841696 TATTTA--GA-AT
1 TATTTAGTGATAA
9841706 TATTTAGTGATAA
1 TATTTAGTGATAA
9841719 TATTTA
1 TATTTA
9841725 AGAAAAATCT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
10 7 0.29
11 2 0.08
12 2 0.08
13 13 0.54
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:9844210 original size:24 final size:24
Alignment explanation
Indices: 9844183--9844233 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
9844173 AGCCTATAAT
9844183 GGGTAGCTCCAAAAAGCAATTAAC
1 GGGTAGCTCCAAAAAGCAATTAAC
* * *
9844207 GGGTAGTTCCGAAGAGCAATTAAC
1 GGGTAGCTCCAAAAAGCAATTAAC
9844231 GGG
1 GGG
9844234 AAGTTCAAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (24 bp):
GGGTAGCTCCAAAAAGCAATTAAC
Found at i:9844248 original size:24 final size:25
Alignment explanation
Indices: 9844196--9844259 Score: 73
Period size: 24 Copynumber: 2.7 Consensus size: 25
9844186 TAGCTCCAAA
*
9844196 AAGCAATTAACGGGTAGTTCCGAAG
1 AAGCAATTAACGGGAAGTTCCGAAG
9844221 -AGCAATTAACGGGAAGTT-C-AAG
1 AAGCAATTAACGGGAAGTTCCGAAG
*
9844243 CAAGC-ACTAACGGGAAG
1 -AAGCAATTAACGGGAAG
9844260 CTCACAAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
22 3 0.09
23 12 0.34
24 20 0.57
ACGTcount: A:0.39, C:0.17, G:0.28, T:0.16
Consensus pattern (25 bp):
AAGCAATTAACGGGAAGTTCCGAAG
Found at i:9844308 original size:26 final size:25
Alignment explanation
Indices: 9844250--9844315 Score: 69
Period size: 26 Copynumber: 2.6 Consensus size: 25
9844240 AAGCAAGCAC
* *
9844250 TAACGGGAAGCTCACAAAGAACCTT
1 TAACGGGAAGCTCACAAAGAACATA
* *
9844275 TAATCGGGAAGCTCACGAAGATTCATA
1 TAA-CGGGAAGCTCACAAAGA-ACATA
*
9844302 TAACGGGACGCTCA
1 TAACGGGAAGCTCA
9844316 TAAGAGCTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 3 0.09
26 26 0.76
27 5 0.15
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (25 bp):
TAACGGGAAGCTCACAAAGAACATA
Found at i:9848272 original size:20 final size:20
Alignment explanation
Indices: 9848247--9848291 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
9848237 TAAGTATTCA
9848247 TTTATATATATT-TATGTATT
1 TTTATA-ATATTATATGTATT
*
9848267 TTTATAATTTTATATGTATT
1 TTTATAATATTATATGTATT
9848287 TTTAT
1 TTTAT
9848292 CGAAAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (20 bp):
TTTATAATATTATATGTATT
Found at i:9849398 original size:3 final size:3
Alignment explanation
Indices: 9849390--9849433 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
9849380 TGGGTAGTTA
*
9849390 AAG AAG AAG AAG AAG AAG AGG AAG AAG AAG AAG AAG AAG -AG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
9849434 GAAAGTAGCA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:9859545 original size:2 final size:2
Alignment explanation
Indices: 9859538--9859566 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
9859528 ATCCAAAACC
9859538 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
9859567 CTTAGGGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:9884215 original size:18 final size:18
Alignment explanation
Indices: 9884192--9884234 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
9884182 AAATAGATTT
9884192 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
*
9884210 TTAATTAAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
9884228 TTAATTA
1 TTAATTA
9884235 CACCTTAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:9891608 original size:3 final size:3
Alignment explanation
Indices: 9891600--9891629 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
9891590 CACCCGTCTC
9891600 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
9891630 GTTGTCTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:9901922 original size:9 final size:9
Alignment explanation
Indices: 9901908--9901950 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
9901898 TTTGGTTAAA
9901908 AATTACCCG
1 AATTACCCG
9901917 AATTACCCG
1 AATTACCCG
*
9901926 AATTAACCG
1 AATTACCCG
*
9901935 AATTAACCG
1 AATTACCCG
9901944 AATTACC
1 AATTACC
9901951 GAAAAATACC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.40, C:0.28, G:0.09, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:9905151 original size:28 final size:26
Alignment explanation
Indices: 9905084--9905153 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 26
9905074 AATTTAAAAA
9905084 AATATATATTAAAAAGAAGACTTACTT
1 AATATA-ATTAAAAAGAAGACTTACTT
* * *
9905111 AATCATATTTAAAAAGGAGAGTTACTTTT
1 AAT-ATAATTAAAAAGAAGACTTAC--TT
9905140 AATATAATTAAAAA
1 AATATAATTAAAAA
9905154 TTTATTTTGA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 18 0.50
28 13 0.36
29 5 0.14
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (26 bp):
AATATAATTAAAAAGAAGACTTACTT
Found at i:9912264 original size:13 final size:14
Alignment explanation
Indices: 9912237--9912266 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
9912227 ATGACCCTTC
9912237 TTTCTTTCTTTCTT
1 TTTCTTTCTTTCTT
9912251 TTTCTTTC-TTCTT
1 TTTCTTTCTTTCTT
9912264 TTT
1 TTT
9912267 AATTTGCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTCTTTCTTTCTT
Found at i:9916057 original size:41 final size:41
Alignment explanation
Indices: 9916002--9916127 Score: 186
Period size: 41 Copynumber: 3.1 Consensus size: 41
9915992 AAATATTTTT
* *
9916002 ATTTTTTTATTTTTAAAATACTTTTAAAATACTTTTTTTAA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAA
*
9916043 ATTTTTTTAATTTTAAAATATTTTTAAAATAC-ATTTTTAA
1 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAA
*
9916083 A-TTTTTTAATTTTAAAATATTTTTAAAATAAATTTTTTT-A
1 ATTTTTTTAATTTTAAAATATTTTTAAAAT-ACTTTTTTTAA
9916123 ATTTT
1 ATTTT
9916128 AAAATAAATT
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
39 28 0.36
40 11 0.14
41 38 0.49
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (41 bp):
ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAA
Found at i:9916080 original size:13 final size:11
Alignment explanation
Indices: 9916009--9916112 Score: 61
Period size: 11 Copynumber: 10.2 Consensus size: 11
9915999 TTTATTTTTT
9916009 TATTTTTAAAA
1 TATTTTTAAAA
*
9916020 TACTTTTAAAA
1 TATTTTTAAAA
*
9916031 TACTTTTTTTAAA
1 TA--TTTTTAAAA
9916044 T-TTTTT----
1 TATTTTTAAAA
*
9916050 TAATTTTAAAA
1 TATTTTTAAAA
9916061 TATTTTTAAAA
1 TATTTTTAAAA
9916072 TACATTTTT-AAA
1 T--ATTTTTAAAA
9916084 T-TTTTT---A
1 TATTTTTAAAA
9916091 -A-TTTTAAAA
1 TATTTTTAAAA
9916100 TATTTTTAAAA
1 TATTTTTAAAA
9916111 TA
1 TA
9916113 AATTTTTTTA
Statistics
Matches: 73, Mismatches: 5, Indels: 30
0.68 0.05 0.28
Matches are distributed among these distances:
6 5 0.07
7 5 0.07
9 6 0.08
10 6 0.08
11 33 0.45
12 4 0.05
13 14 0.19
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:9916097 original size:15 final size:15
Alignment explanation
Indices: 9916077--9916130 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
9916067 TAAAATACAT
9916077 TTTTAAATTTTTTAA
1 TTTTAAATTTTTTAA
9916092 TTTTAAAATATTTTTAA
1 TTTT-AAAT-TTTTTAA
**
9916109 -AATAAATTTTTTTAA
1 TTTTAAA-TTTTTTAA
9916124 TTTTAAA
1 TTTTAAA
9916131 ATAAATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
15 14 0.45
16 10 0.32
17 7 0.23
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTTAAATTTTTTAA
Found at i:9919025 original size:12 final size:12
Alignment explanation
Indices: 9919003--9919046 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
9918993 ATCTCTCTCA
*
9919003 AGAAGCAGAAGC
1 AGAAGCCGAAGC
* *
9919015 CGAAGCCGAAGT
1 AGAAGCCGAAGC
9919027 AGAAGCCGAAGC
1 AGAAGCCGAAGC
9919039 AGAAGCCG
1 AGAAGCCG
9919047 TGGTCGGAGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.41, C:0.23, G:0.34, T:0.02
Consensus pattern (12 bp):
AGAAGCCGAAGC
Found at i:9919030 original size:18 final size:18
Alignment explanation
Indices: 9919003--9919044 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
9918993 ATCTCTCTCA
9919003 AGAAGCAGAAGCCGAAGC
1 AGAAGCAGAAGCCGAAGC
* *
9919021 CGAAGTAGAAGCCGAAGC
1 AGAAGCAGAAGCCGAAGC
9919039 AGAAGC
1 AGAAGC
9919045 CGTGGTCGGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.43, C:0.21, G:0.33, T:0.02
Consensus pattern (18 bp):
AGAAGCAGAAGCCGAAGC
Found at i:9921003 original size:6 final size:6
Alignment explanation
Indices: 9920992--9921021 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
9920982 AGTCCAAGTG
9920992 GGAGCA GGAGCA GGAGCA GGAGCA GGAGCA
1 GGAGCA GGAGCA GGAGCA GGAGCA GGAGCA
9921022 AGAGTGTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.50, T:0.00
Consensus pattern (6 bp):
GGAGCA
Found at i:9923082 original size:27 final size:28
Alignment explanation
Indices: 9923027--9923082 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
9923017 CAAGATATAT
***
9923027 TGGTAACTTCTATCACTTGCTTGTGTCA
1 TGGTAACTTCTATCACTTGCTTACATCA
*
9923055 TGGTAGCTTCTATCA-TTGCTTACATCA
1 TGGTAACTTCTATCACTTGCTTACATCA
9923082 T
1 T
9923083 AATTGGTTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 10 0.42
28 14 0.58
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.43
Consensus pattern (28 bp):
TGGTAACTTCTATCACTTGCTTACATCA
Found at i:9926374 original size:725 final size:725
Alignment explanation
Indices: 9925291--9927510 Score: 3484
Period size: 725 Copynumber: 3.0 Consensus size: 725
9925281 GATGAAGAAA
9925291 ACACTTCATCTGATGAGTCGTCATCTATGTTAAAAAATTATAAAAAACATAAAAAAACGTAAAAA
1 ACACTTCATCTGATGAGTCGTCATCTATGTTAAAAAATTATAAAAAACATAAAAAAACGTAAAAA
9925356 AAGATGATAAACAAAATGAATATGATTTCCAGTCCTATAAAACACTTATAGAACATTGGAAAGAA
66 AAGATGATAAACAAAATGAATATGATTTCCAGTCCTATAAAACACTTATAGAACATTGGAAAGAA
9925421 AAATTTACTAATAGTAATGATCAACTAGAAAGAGTGGAATATTTAAAACTAATTGAAGAACTTTA
131 AAATTTACTAATAGTAATGATCAACTAGAAAGAGTGGAATATTTAAAACTAATTGAAGAACTTTA
9925486 TGAAAAACATAAAGATCTTTTTAGTATGTTTAATTATCATTATATGTTAAAATATGATGATAGTA
196 TGAAAAACATAAAGATCTTTTTAGTATGTTTAATTATCATTATATGTTAAAATATGATGATAGTA
* * *
9925551 GTAGTTCGAGTAATTCTGAAAAAACAGAATTATTTAAGAAACAATCTGATGAAGAAAAAACTTCA
261 GTAGTTCGAGTAATTCTGAAAATACAGAATTATTAAAGAAACAATCTAATGAAGAAAAAACTTCA
9925616 ACAGATCAGGATGAAGACATAAAAGTCTCAACTTATAATTCTGATGAAGAAACCACTTCATCTGA
326 ACAGATCAGGATGAAGACATAAAAGTCTCAACTTATAATTCTGATGAAGAAACCACTTCATCTGA
9925681 AGAAGTAGACGAAGAAATAAATATTCCGGAACCCATGGATACTGAACCAACAGATCCTAATAGAA
391 AGAAGTAGACGAAGAAATAAATATTCCGGAACCCATGGATACTGAACCAACAGATCCTAATAGAA
9925746 AAAGAAAAATAGAATCAAATAGTCAAACAAATAATTATTTGATTAAAGATTTAAGTAAAGTTCAA
456 AAAGAAAAATAGAATCAAATAGTCAAACAAATAATTATTTGATTAAAGATTTAAGTAAAGTTCAA
9925811 TATACAACCAGTATGTTGACTAGTACTATAAAAATTTAGCTATTAATGAGAAAAATCCTAAAAAT
521 TATACAACCAGTATGTTGACTAGTACTATAAAAATTTAGCTATTAATGAGAAAAATCCTAAAAAT
9925876 AGAAAATGTATTAATAAAACTTCACTTGGATGGTTAGGTGTAAAACCTAATACTCATCATAGGCA
586 AGAAAATGTATTAATAAAACTTCACTTGGATGGTTAGGTGTAAAACCTAATACTCATCATAGGCA
9925941 TAAAAAGAAAAAATATAATAAACAAGTCAAGGAAATCCACATACCAACAATAAAGATTGGCAACG
651 TAAAAAGAAAAAATATAATAAACAAGTCAAGGAAATCCACATACCAACAATAAAGATTGGCAACG
9926006 TGGATGTCAT
716 TGGATGTCAT
9926016 ACACTTCATCTGATGAGTCGTCATCTATGTTAAAAAATTATAAAAAACATAAAAAAACGTAAAAA
1 ACACTTCATCTGATGAGTCGTCATCTATGTTAAAAAATTATAAAAAACATAAAAAAACGTAAAAA
9926081 AAGATGATAAACAAAATGAATATGATTTCCAGTCCTATAAAACACTTATAGAACATTGGAAAGAA
66 AAGATGATAAACAAAATGAATATGATTTCCAGTCCTATAAAACACTTATAGAACATTGGAAAGAA
9926146 AAATTTACTAATAGTAATGATCAACTAGAAAGAGTGGAATATTTAAAACTAATTGAAGAACTTTA
131 AAATTTACTAATAGTAATGATCAACTAGAAAGAGTGGAATATTTAAAACTAATTGAAGAACTTTA
9926211 TGAAAAACATAAAGATCTTTTTAGTATGTTTAATTATCATTATATGTTAAAATATGATGATAGTA
196 TGAAAAACATAAAGATCTTTTTAGTATGTTTAATTATCATTATATGTTAAAATATGATGATAGTA
9926276 GTAGTTCGAGTAATTCTGAAAATACAGAATTATTAAAGAAACAATCTAATGAAGAAAAAACTTCA
261 GTAGTTCGAGTAATTCTGAAAATACAGAATTATTAAAGAAACAATCTAATGAAGAAAAAACTTCA
9926341 ACAGATCAGGATGAAGACATAAAAGTCTCAACTTATAATTCTGATGAAGAAACCACTTCATCTGA
326 ACAGATCAGGATGAAGACATAAAAGTCTCAACTTATAATTCTGATGAAGAAACCACTTCATCTGA
9926406 AGAAGTAGACGAAGAAATAAATATTCCGGAACCCATGGATACTGAACCAACAGATCCTAATAGAA
391 AGAAGTAGACGAAGAAATAAATATTCCGGAACCCATGGATACTGAACCAACAGATCCTAATAGAA
9926471 AAAGAAAAATAGAATCAAATAGTCAAACAAATAATTATTTGATTAAAGATTTAAGTAAAGTTCAA
456 AAAGAAAAATAGAATCAAATAGTCAAACAAATAATTATTTGATTAAAGATTTAAGTAAAGTTCAA
9926536 TATACAACCAGTATGTTGACTAGTACTATAAAAATTTAGCTATTAATGAGAAAAATCCTAAAAAT
521 TATACAACCAGTATGTTGACTAGTACTATAAAAATTTAGCTATTAATGAGAAAAATCCTAAAAAT
9926601 AGAAAATGTATTAATAAAACTTCACTTGGATGGTTAGGTGTAAAACCTAATACTCATCATAGGCA
586 AGAAAATGTATTAATAAAACTTCACTTGGATGGTTAGGTGTAAAACCTAATACTCATCATAGGCA
9926666 TAAAAAGAAAAAATATAATAAACAAGTCAAGGAAATCCACATACCAACAATAAAGATTGGCAACG
651 TAAAAAGAAAAAATATAATAAACAAGTCAAGGAAATCCACATACCAACAATAAAGATTGGCAACG
9926731 TGGATGTCAT
716 TGGATGTCAT
** ** * ** * * *** *
9926741 A-A--TCAAATCCATGATGAAGAAGAAAATCCAAGTGCAGACAAACAAGTCT-TGCAACGTGGAA
1 ACACTTC--AT-C-TGATG-AGTCG-TCAT-CTA-TG-TTA-AAA-AATTATAAAAAACAT--AA
*** * * * * * * ** ** *
9926802 GCTATCATCAAACCAATGATGATGTAAGCAATGATGGAAGCTACCATGACACAAG-CAAGTGATG
53 AAAAACGT-AAA-AAAAGATGA--TAAACAA-AAT-GAA--TATGATTTC-C-AGTC--CT-AT-
* * * * * * * *
9926866 GAAGCAGCCATTAATTGAAGCA-TGCAACGTGGAAACAACTAGGTCCATGCAAT--TAAAGATAC
104 AAAACA--C-TT-ATAGAA-CATTGGAA---AGAAA-AA-T--TTAC-T--AATAGTAATGAT-C
** * *** * * * *
9926928 AAGAAGACAAATGAGATGGGGAAGCAGCCACATCCATTTGAAGAGAACTTTATGAAAAACATAAA
153 AACTAG--AAA-GAG-T--GGAA-TATTTAAAACTAATTG-A-AGAACTTTATGAAAAACATAAA
9926993 GATCTTTTTAGTATGTTTAATTATCATTATATGTTAAAATATGATGATAGTAGTAGTTCGAGTAA
209 GATCTTTTTAGTATGTTTAATTATCATTATATGTTAAAATATGATGATAGTAGTAGTTCGAGTAA
9927058 TTCTGAAAATACAGAATTATTAAAGAAACAATCTAATGAAGAAAAAACTTCAACAGATCAGGATG
274 TTCTGAAAATACAGAATTATTAAAGAAACAATCTAATGAAGAAAAAACTTCAACAGATCAGGATG
9927123 AAGACATAAAAGTCTCAACTTATAATTCTGATGAAGAAACCACTTCATCTGAAGAAGTAGACGAA
339 AAGACATAAAAGTCTCAACTTATAATTCTGATGAAGAAACCACTTCATCTGAAGAAGTAGACGAA
9927188 GAAATAAATATTCCGGAACCCATGGATACTGAACCAACAGATCCTAATAGAAAAAGAAAAATAGA
404 GAAATAAATATTCCGGAACCCATGGATACTGAACCAACAGATCCTAATAGAAAAAGAAAAATAGA
9927253 ATCAAATAGTCAAACAAATAATTATTTGATTAAAGATTTAAGTAAAGTTCAATATACAACCAGTA
469 ATCAAATAGTCAAACAAATAATTATTTGATTAAAGATTTAAGTAAAGTTCAATATACAACCAGTA
9927318 TGTTGACTAGTACTATAAAAATTTAGCTATTAATGAGAAAAATCCTAAAAATAGAAAATGTATTA
534 TGTTGACTAGTACTATAAAAATTTAGCTATTAATGAGAAAAATCCTAAAAATAGAAAATGTATTA
9927383 ATAAAACTTCACTTGGATGGTTAGGTGTAAAACCTAATACTCATCATAGGCATAAAAAGAAAAAA
599 ATAAAACTTCACTTGGATGGTTAGGTGTAAAACCTAATACTCATCATAGGCATAAAAAGAAAAAA
9927448 TATAATAAACAAGTCAAGGAAATCCACATACCAACAATAAAGATTGGCAACGTGGATGTCAT
664 TATAATAAACAAGTCAAGGAAATCCACATACCAACAATAAAGATTGGCAACGTGGATGTCAT
9927510 A
1 A
9927511 ATCAAATCCA
Statistics
Matches: 1395, Mismatches: 48, Indels: 60
0.93 0.03 0.04
Matches are distributed among these distances:
722 2 0.00
724 3 0.00
725 724 0.52
726 5 0.00
727 3 0.00
728 2 0.00
729 2 0.00
730 2 0.00
731 1 0.00
732 7 0.01
733 4 0.00
734 5 0.00
735 3 0.00
736 7 0.01
738 6 0.00
739 2 0.00
740 3 0.00
742 5 0.00
743 2 0.00
744 2 0.00
745 1 0.00
746 2 0.00
747 4 0.00
749 1 0.00
750 2 0.00
751 9 0.01
752 2 0.00
754 4 0.00
755 2 0.00
756 1 0.00
758 2 0.00
759 7 0.01
760 5 0.00
761 3 0.00
762 3 0.00
763 3 0.00
764 1 0.00
766 4 0.00
767 8 0.01
768 1 0.00
769 540 0.39
ACGTcount: A:0.47, C:0.13, G:0.15, T:0.26
Consensus pattern (725 bp):
ACACTTCATCTGATGAGTCGTCATCTATGTTAAAAAATTATAAAAAACATAAAAAAACGTAAAAA
AAGATGATAAACAAAATGAATATGATTTCCAGTCCTATAAAACACTTATAGAACATTGGAAAGAA
AAATTTACTAATAGTAATGATCAACTAGAAAGAGTGGAATATTTAAAACTAATTGAAGAACTTTA
TGAAAAACATAAAGATCTTTTTAGTATGTTTAATTATCATTATATGTTAAAATATGATGATAGTA
GTAGTTCGAGTAATTCTGAAAATACAGAATTATTAAAGAAACAATCTAATGAAGAAAAAACTTCA
ACAGATCAGGATGAAGACATAAAAGTCTCAACTTATAATTCTGATGAAGAAACCACTTCATCTGA
AGAAGTAGACGAAGAAATAAATATTCCGGAACCCATGGATACTGAACCAACAGATCCTAATAGAA
AAAGAAAAATAGAATCAAATAGTCAAACAAATAATTATTTGATTAAAGATTTAAGTAAAGTTCAA
TATACAACCAGTATGTTGACTAGTACTATAAAAATTTAGCTATTAATGAGAAAAATCCTAAAAAT
AGAAAATGTATTAATAAAACTTCACTTGGATGGTTAGGTGTAAAACCTAATACTCATCATAGGCA
TAAAAAGAAAAAATATAATAAACAAGTCAAGGAAATCCACATACCAACAATAAAGATTGGCAACG
TGGATGTCAT
Found at i:9927679 original size:769 final size:769
Alignment explanation
Indices: 9926202--9927740 Score: 3078
Period size: 769 Copynumber: 2.0 Consensus size: 769
9926192 AACTAATTGA
9926202 AGAACTTTATGAAAAACATAAAGATCTTTTTAGTATGTTTAATTATCATTATATGTTAAAATATG
1 AGAACTTTATGAAAAACATAAAGATCTTTTTAGTATGTTTAATTATCATTATATGTTAAAATATG
9926267 ATGATAGTAGTAGTTCGAGTAATTCTGAAAATACAGAATTATTAAAGAAACAATCTAATGAAGAA
66 ATGATAGTAGTAGTTCGAGTAATTCTGAAAATACAGAATTATTAAAGAAACAATCTAATGAAGAA
9926332 AAAACTTCAACAGATCAGGATGAAGACATAAAAGTCTCAACTTATAATTCTGATGAAGAAACCAC
131 AAAACTTCAACAGATCAGGATGAAGACATAAAAGTCTCAACTTATAATTCTGATGAAGAAACCAC
9926397 TTCATCTGAAGAAGTAGACGAAGAAATAAATATTCCGGAACCCATGGATACTGAACCAACAGATC
196 TTCATCTGAAGAAGTAGACGAAGAAATAAATATTCCGGAACCCATGGATACTGAACCAACAGATC
9926462 CTAATAGAAAAAGAAAAATAGAATCAAATAGTCAAACAAATAATTATTTGATTAAAGATTTAAGT
261 CTAATAGAAAAAGAAAAATAGAATCAAATAGTCAAACAAATAATTATTTGATTAAAGATTTAAGT
9926527 AAAGTTCAATATACAACCAGTATGTTGACTAGTACTATAAAAATTTAGCTATTAATGAGAAAAAT
326 AAAGTTCAATATACAACCAGTATGTTGACTAGTACTATAAAAATTTAGCTATTAATGAGAAAAAT
9926592 CCTAAAAATAGAAAATGTATTAATAAAACTTCACTTGGATGGTTAGGTGTAAAACCTAATACTCA
391 CCTAAAAATAGAAAATGTATTAATAAAACTTCACTTGGATGGTTAGGTGTAAAACCTAATACTCA
9926657 TCATAGGCATAAAAAGAAAAAATATAATAAACAAGTCAAGGAAATCCACATACCAACAATAAAGA
456 TCATAGGCATAAAAAGAAAAAATATAATAAACAAGTCAAGGAAATCCACATACCAACAATAAAGA
9926722 TTGGCAACGTGGATGTCATAATCAAATCCATGATGAAGAAGAAAATCCAAGTGCAGACAAACAAG
521 TTGGCAACGTGGATGTCATAATCAAATCCATGATGAAGAAGAAAATCCAAGTGCAGACAAACAAG
9926787 TCTTGCAACGTGGAAGCTATCATCAAACCAATGATGATGTAAGCAATGATGGAAGCTACCATGAC
586 TCTTGCAACGTGGAAGCTATCATCAAACCAATGATGATGTAAGCAATGATGGAAGCTACCATGAC
9926852 ACAAGCAAGTGATGGAAGCAGCCATTAATTGAAGCATGCAACGTGGAAACAACTAGGTCCATGCA
651 ACAAGCAAGTGATGGAAGCAGCCATTAATTGAAGCATGCAACGTGGAAACAACTAGGTCCATGCA
9926917 ATTAAAGATACAAGAAGACAAATGAGATGGGGAAGCAGCCACATCCATTTGAAG
716 ATTAAAGATACAAGAAGACAAATGAGATGGGGAAGCAGCCACATCCATTTGAAG
9926971 AGAACTTTATGAAAAACATAAAGATCTTTTTAGTATGTTTAATTATCATTATATGTTAAAATATG
1 AGAACTTTATGAAAAACATAAAGATCTTTTTAGTATGTTTAATTATCATTATATGTTAAAATATG
9927036 ATGATAGTAGTAGTTCGAGTAATTCTGAAAATACAGAATTATTAAAGAAACAATCTAATGAAGAA
66 ATGATAGTAGTAGTTCGAGTAATTCTGAAAATACAGAATTATTAAAGAAACAATCTAATGAAGAA
9927101 AAAACTTCAACAGATCAGGATGAAGACATAAAAGTCTCAACTTATAATTCTGATGAAGAAACCAC
131 AAAACTTCAACAGATCAGGATGAAGACATAAAAGTCTCAACTTATAATTCTGATGAAGAAACCAC
9927166 TTCATCTGAAGAAGTAGACGAAGAAATAAATATTCCGGAACCCATGGATACTGAACCAACAGATC
196 TTCATCTGAAGAAGTAGACGAAGAAATAAATATTCCGGAACCCATGGATACTGAACCAACAGATC
9927231 CTAATAGAAAAAGAAAAATAGAATCAAATAGTCAAACAAATAATTATTTGATTAAAGATTTAAGT
261 CTAATAGAAAAAGAAAAATAGAATCAAATAGTCAAACAAATAATTATTTGATTAAAGATTTAAGT
9927296 AAAGTTCAATATACAACCAGTATGTTGACTAGTACTATAAAAATTTAGCTATTAATGAGAAAAAT
326 AAAGTTCAATATACAACCAGTATGTTGACTAGTACTATAAAAATTTAGCTATTAATGAGAAAAAT
9927361 CCTAAAAATAGAAAATGTATTAATAAAACTTCACTTGGATGGTTAGGTGTAAAACCTAATACTCA
391 CCTAAAAATAGAAAATGTATTAATAAAACTTCACTTGGATGGTTAGGTGTAAAACCTAATACTCA
9927426 TCATAGGCATAAAAAGAAAAAATATAATAAACAAGTCAAGGAAATCCACATACCAACAATAAAGA
456 TCATAGGCATAAAAAGAAAAAATATAATAAACAAGTCAAGGAAATCCACATACCAACAATAAAGA
9927491 TTGGCAACGTGGATGTCATAATCAAATCCATGATGAAGAAGAAAATCCAAGTGCAGACAAACAAG
521 TTGGCAACGTGGATGTCATAATCAAATCCATGATGAAGAAGAAAATCCAAGTGCAGACAAACAAG
9927556 TCTTGCAACGTGGAAGCTATCATCAAACCAATGATGATGTAAGCAATGATGGAAGCTACCATGAC
586 TCTTGCAACGTGGAAGCTATCATCAAACCAATGATGATGTAAGCAATGATGGAAGCTACCATGAC
9927621 ACAAGCAAGTGATGGAAGCAGCCATTAATTGAAGCATGCAACGTGGAAACAACTAGGTCCATGCA
651 ACAAGCAAGTGATGGAAGCAGCCATTAATTGAAGCATGCAACGTGGAAACAACTAGGTCCATGCA
9927686 ATTAAAGATACAAGAAGACAAATGAGATGGGGAAGCAGCCACATCCATTTGAAG
716 ATTAAAGATACAAGAAGACAAATGAGATGGGGAAGCAGCCACATCCATTTGAAG
9927740 A
1 A
9927741 CCGAATCCTT
Statistics
Matches: 770, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
769 770 1.00
ACGTcount: A:0.45, C:0.14, G:0.17, T:0.24
Consensus pattern (769 bp):
AGAACTTTATGAAAAACATAAAGATCTTTTTAGTATGTTTAATTATCATTATATGTTAAAATATG
ATGATAGTAGTAGTTCGAGTAATTCTGAAAATACAGAATTATTAAAGAAACAATCTAATGAAGAA
AAAACTTCAACAGATCAGGATGAAGACATAAAAGTCTCAACTTATAATTCTGATGAAGAAACCAC
TTCATCTGAAGAAGTAGACGAAGAAATAAATATTCCGGAACCCATGGATACTGAACCAACAGATC
CTAATAGAAAAAGAAAAATAGAATCAAATAGTCAAACAAATAATTATTTGATTAAAGATTTAAGT
AAAGTTCAATATACAACCAGTATGTTGACTAGTACTATAAAAATTTAGCTATTAATGAGAAAAAT
CCTAAAAATAGAAAATGTATTAATAAAACTTCACTTGGATGGTTAGGTGTAAAACCTAATACTCA
TCATAGGCATAAAAAGAAAAAATATAATAAACAAGTCAAGGAAATCCACATACCAACAATAAAGA
TTGGCAACGTGGATGTCATAATCAAATCCATGATGAAGAAGAAAATCCAAGTGCAGACAAACAAG
TCTTGCAACGTGGAAGCTATCATCAAACCAATGATGATGTAAGCAATGATGGAAGCTACCATGAC
ACAAGCAAGTGATGGAAGCAGCCATTAATTGAAGCATGCAACGTGGAAACAACTAGGTCCATGCA
ATTAAAGATACAAGAAGACAAATGAGATGGGGAAGCAGCCACATCCATTTGAAG
Found at i:9932514 original size:89 final size:89
Alignment explanation
Indices: 9932195--9932543 Score: 288
Period size: 89 Copynumber: 3.9 Consensus size: 89
9932185 ACTGGAGCTG
*** * *
9932195 AAAT-AATTTTTTTATTTTACGGAATAATTATAATAATTATAATTTTTTTCATTTCA-TTTTGGG
1 AAATAAATTTTTTTATTTTATAAAATAATTATAATAATTACAATTTATTTCATTTCATTTTTGGG
*
9932258 CACTTAAGCTT-AAGTTT-GATGCTGC
66 CACTTAAGCTTGAA-TTTAG-TGC-AC
* * * ** **
9932283 -AATAAATTTTTCTATTTT-TCAATATAATCATAATAATTACTCTTTATTTCTATTT-ATTATCG
1 AAATAAATTTTTTTATTTTAT-AAAATAATTATAATAATTACAATTTATTTC-ATTTCATT-TTT
* * * *
9932345 GGGTATTTGGAA--TTGAGTCTAGTGCA-
63 GGGCACTT--AAGCTTGAATTTAGTGCAC
** * *
9932371 ATAATAATATATATATTTTATTTTATTGAATAATTATAATAATTACTATGTATTTCATTTCATTT
1 A-AATAA-AT-T-T-TTTTATTTTATAAAATAATTATAATAATTACAATTTATTTCATTTCATTT
*
9932436 TTGAGGCACTTGAGCTTGAATTTAGTGCAC
61 TTG-GGCACTTAAGCTTGAATTTAGTGCAC
9932466 AAAT-AATTTTTTTATTTTATAAAATAATTATAATAATTACAATTTATTTCATTTCATTTTTGGA
1 AAATAAATTTTTTTATTTTATAAAATAATTATAATAATTACAATTTATTTCATTTCATTTTTGG-
9932530 GCACTTAAGCTTGA
65 GCACTTAAGCTTGA
9932544 GGTTTGTACT
Statistics
Matches: 203, Mismatches: 36, Indels: 43
0.72 0.13 0.15
Matches are distributed among these distances:
87 3 0.01
88 37 0.18
89 67 0.33
90 20 0.10
91 5 0.02
92 6 0.03
93 8 0.04
94 55 0.27
95 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.48
Consensus pattern (89 bp):
AAATAAATTTTTTTATTTTATAAAATAATTATAATAATTACAATTTATTTCATTTCATTTTTGGG
CACTTAAGCTTGAATTTAGTGCAC
Found at i:9932744 original size:91 final size:89
Alignment explanation
Indices: 9932571--9932898 Score: 225
Period size: 91 Copynumber: 3.5 Consensus size: 89
9932561 TATTTTTAAA
* * * * * * * *
9932571 AATTTTCTAGATTAATTATAA-GAATCATTATTAATTTAATTTCATTTTCGAGGCACTTGAACTT
1 AATTTTTTAGAATAATTATAATCAA-CACTATTTATTTTATTTCATTTT-AAGGCACTTGGACTT
* * *
9932635 GAGTATGGTTTCGCAATAATATTTTTT
64 GAGTCTGGGTT-GAAATAATATTTTTT
* *
9932662 AATTTTACT-GAATAATTATAATCAACACTATTTATTATATTTCATTTTAAGGCCACTTGGACTT
1 AATTTT-TTAGAATAATTATAATCAACACTATTTATTTTATTTCATTTTAAGG-CACTTGGACTT
9932726 GAGTCTGGGGTTGAAATAACATATATATTTTT
64 GAGTCT-GGGTTGAAAT---A-ATAT-TTTTT
* * ** * **
9932758 AATTTTTTTAGAATTATTATAA-CAATCATTATTTATTTTATTTCATTTTTGGGGCATTTGGGTT
1 AA-TTTTTTAGAATAATTATAATCAA-CACTATTTATTTTATTTCA-TTTTAAGGCACTTGGACT
* * *
9932822 TGAGTCTTGTGCT-ACAAT-ATTTTTTTT
63 TGAGTC-TGGGTTGA-AATAATATTTTTT
* * *
9932849 AAAATTTTTTGGAATAATTATAATCAGCACTATTTATTTTGTTTCATTTT
1 --AATTTTTTAGAATAATTATAATCAACACTATTTATTTTATTTCATTTT
9932899 TGGGAACTTG
Statistics
Matches: 191, Mismatches: 28, Indels: 36
0.75 0.11 0.14
Matches are distributed among these distances:
90 3 0.02
91 64 0.34
92 45 0.24
93 4 0.02
94 1 0.01
95 4 0.02
96 12 0.06
97 51 0.27
98 7 0.04
ACGTcount: A:0.30, C:0.09, G:0.12, T:0.48
Consensus pattern (89 bp):
AATTTTTTAGAATAATTATAATCAACACTATTTATTTTATTTCATTTTAAGGCACTTGGACTTGA
GTCTGGGTTGAAATAATATTTTTT
Found at i:9933229 original size:89 final size:87
Alignment explanation
Indices: 9933010--9933777 Score: 369
Period size: 89 Copynumber: 8.6 Consensus size: 87
9933000 CAATAATAAA
* * **
9933010 TTTTATTTTCTGAAATAATTAAAATAATTACCATGTATTTTTATTTTCATTTTATTTTTTAGGCA
1 TTTTA-TTTCTGAAATAATTATAATAATTA-CA---A--TTTA-TTTCATTTCATTTTCGAGGCA
* * *
9933075 CTTGGGTTTG-ATCTGGTGTTGCAATAATTTT
58 CTAGGGCTTGAAT-TGATGTTGCAATAA-TTT
* * * * *
9933106 TTTTAATTTTTCGGAATAATTATAAAAATTACAATTTATATCATTTCATTTTC-ATGGCACTTGG
1 TTTT-ATTTCT-GAAATAATTATAATAATTACAATTTATTTCATTTCATTTTCGA-GGCACTAGG
* *
9933170 ACTTGAATATGTTGTTGCAATAATTT
63 GCTTGAAT-TGATGTTGCAATAATTT
** **
9933196 TTCTTATTTCTGAAATAATTATAATAATTACAATTTCCTTCATTTCATTTTCG-GG-ACATTTGG
1 TT-TTATTTCTGAAATAATTATAATAATTACAATTTATTTCATTTCATTTTCGAGGCAC-TAGGG
* *
9933259 CTTGAGTCTGATGTCGCAATAAGTTT
64 CTTGAAT-TGATGTTGCAATAA-TTT
* *
9933285 TTATT-TTTC-GGAATAGTTATAATAATTACAATTTATTTCATTAT-ATTTTCGAGGCACTAGGG
1 TT-TTATTTCTGAAATAATTATAATAATTACAATTTATTTCATT-TCATTTTCGAGGCACTAGGG
* * * *
9933347 CTTGAGCTTGGTGCTACAAT-ATATT
64 CTTGA-ATTGATGTTGCAATAAT-TT
* * *
9933372 TTTTATTTTCCGAAATAATTATAACAATTACTATTTATTTCATTTCATTTTCGAGGCACTAGGGC
1 TTTTA-TTTCTGAAATAATTATAATAATTACAATTTATTTCATTTCATTTTCGAGGCACTAGGGC
* * * * * *
9933437 TTGAGTTTGGTGCTACAAGATTTT
65 TTGA-ATTGATGTTGCAATAATTT
* * * * * * *
9933461 TTTTAATTTTTGGAATAATTATAAT-ATT-TAA--TA-TTCATTTCATTTTCG-GGGAATATAGA
1 TTTT-ATTTCTGAAATAATTATAATAATTACAATTTATTTCATTTCATTTTCGAGGCACTA-GGG
* *
9933520 CTTGAGTCTGGTGTTGCAATAA---
64 CTTGAAT-TGATGTTGCAATAATTT
* * * ** * * *
9933542 ATTT-TTT-TGGAATAATTTTAATAGCTACTATTTATTTCATTTCATTTTTG-GGCACTTGGGCT
1 TTTTATTTCTGAAATAATTATAATAATTACAATTTATTTCATTTCATTTTCGAGGCACTAGGGCT
* * * *
9933604 TGATTCTGAAGCTACAATAA-TT
66 TGAAT-TGATGTTGCAATAATTT
* * * * * * * * *
9933626 TTTTATTTTTTGGAATAGTTATAGTAGTTACTATTTGTTTCATTTCATTTTC-AGAGCACTTGGT
1 TTTTA-TTTCTGAAATAATTATAATAATTACAATTTATTTCATTTCATTTTCGAG-GCACTAGGG
9933690 CTTTATTCTAGAGCTAGCTT-AGTGTTGCAATAA-TT
64 C-----T-T-GA---A--TTGA-TGTTGCAATAATTT
* *
9933725 TTTTATTTTTTGAAATAATTATAATAATTACTATTTATTTCATTTCATTTTCG
1 TTTTA-TTTCTGAAATAATTATAATAATTACAATTTATTTCATTTCATTTTCG
9933778 GGTCACTTGA
Statistics
Matches: 534, Mismatches: 91, Indels: 90
0.75 0.13 0.13
Matches are distributed among these distances:
78 14 0.03
79 4 0.01
80 1 0.00
81 3 0.01
82 20 0.04
83 24 0.04
84 34 0.06
85 2 0.00
86 6 0.01
87 81 0.15
88 63 0.12
89 133 0.25
90 36 0.07
91 21 0.04
93 2 0.00
94 1 0.00
95 2 0.00
96 10 0.02
97 17 0.03
98 1 0.00
99 58 0.11
100 1 0.00
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.48
Consensus pattern (87 bp):
TTTTATTTCTGAAATAATTATAATAATTACAATTTATTTCATTTCATTTTCGAGGCACTAGGGCT
TGAATTGATGTTGCAATAATTT
Found at i:9933389 original size:176 final size:177
Alignment explanation
Indices: 9933105--9933424 Score: 427
Period size: 176 Copynumber: 1.8 Consensus size: 177
9933095 GCAATAATTT
*
9933105 TTTTTAATTTTTCGGAATAATTATAAAAATTACAATTTATATCATTTCATTTTCATGGCACTTGG
1 TTTTTAATTTTTCGGAATAATTATAAAAATTACAATTTATATCATTTCATTTTCATGGCACTAGG
* * * * * *
9933170 ACTTGAATATGTTGTTGCAATAATTTTTCTTATTTCTGAAATAATTATAATAATTACAATTTCCT
66 ACTTGAATATGGTGCTACAATAATTTTTCTTATTTCCGAAATAATTATAACAATTACAATTTACT
9933235 TCATTTCATTTTCGGGACATTTGGCTTGAGTCTGATGTCGCAATAAG
131 TCATTTCATTTTCGGGACATTTGGCTTGAGTCTGATGTCGCAATAAG
* * *
9933282 TTTTT-ATTTTTCGGAATAGTTATAATAATTACAATTTATTTCATTAT-ATTTTCGA-GGCACTA
1 TTTTTAATTTTTCGGAATAATTATAAAAATTACAATTTATATCATT-TCATTTTC-ATGGCACTA
* * *
9933344 GGGCTTGAGCT-TGGTGCTACAAT-ATATTTT-TTATTTTCCGAAATAATTATAACAATTACTAT
64 GGACTTGA-ATATGGTGCTACAATAAT-TTTTCTTA-TTTCCGAAATAATTATAACAATTACAAT
*
9933406 TTATTTCATTTCATTTTCG
126 TTACTTCATTTCATTTTCG
9933425 AGGCACTAGG
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
175 5 0.04
176 111 0.90
177 8 0.06
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (177 bp):
TTTTTAATTTTTCGGAATAATTATAAAAATTACAATTTATATCATTTCATTTTCATGGCACTAGG
ACTTGAATATGGTGCTACAATAATTTTTCTTATTTCCGAAATAATTATAACAATTACAATTTACT
TCATTTCATTTTCGGGACATTTGGCTTGAGTCTGATGTCGCAATAAG
Found at i:9934792 original size:21 final size:21
Alignment explanation
Indices: 9934768--9934808 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
9934758 AAAATCGATA
*
9934768 TAATTTTA-TTAATTATTAATT
1 TAATATTACTTAA-TATTAATT
9934789 TAATATTACTTAATATTAAT
1 TAATATTACTTAATATTAAT
9934809 ACGTTAAACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TAATATTACTTAATATTAATT
Found at i:9935622 original size:16 final size:16
Alignment explanation
Indices: 9935601--9935632 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
9935591 CAATGGTGGG
9935601 TTCCTTTTTTTTTTCT
1 TTCCTTTTTTTTTTCT
9935617 TTCCTTTTTTTTTTCT
1 TTCCTTTTTTTTTTCT
9935633 GTGGTACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TTCCTTTTTTTTTTCT
Found at i:9938439 original size:75 final size:75
Alignment explanation
Indices: 9938311--9938463 Score: 270
Period size: 75 Copynumber: 2.0 Consensus size: 75
9938301 TCACCAGAAT
* *
9938311 AAGAGGGAACACTATGAGAACTAGTATTTGTTGGACTAATATCTACTCTATTCTGAGGAATCGAA
1 AAGAGGGAACACTATGAGAACTAGTATTTGTTGGACTAATATCTACTCCATTCTAAGGAATCGAA
9938376 GACCCATTCA
66 GACCCATTCA
* *
9938386 AAGAGGGAATACTATGAGAATTAGTATTTGTTGGACTAATATCTACTCCATTCTAAGGAATCGAA
1 AAGAGGGAACACTATGAGAACTAGTATTTGTTGGACTAATATCTACTCCATTCTAAGGAATCGAA
9938451 GACCCATTCA
66 GACCCATTCA
9938461 AAG
1 AAG
9938464 TACTCGGGAA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (75 bp):
AAGAGGGAACACTATGAGAACTAGTATTTGTTGGACTAATATCTACTCCATTCTAAGGAATCGAA
GACCCATTCA
Found at i:9946078 original size:102 final size:102
Alignment explanation
Indices: 9945956--9946288 Score: 558
Period size: 102 Copynumber: 3.3 Consensus size: 102
9945946 CCAATGAGTC
** **
9945956 GGGGAATCAGCACTTAGCAACCCTTTTCACATTTAAGATACGGTGGGTTCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
9946021 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCG
66 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCG
*
9946058 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
* *
9946123 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTG
66 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCG
* *
9946160 GGGGAATCAGCACTTAGCAACCCCCTTCATATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
* *
9946225 CCAATGATTCGAGGAATCAGCACTTAGCAGCCCCTCG
66 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCG
*
9946262 GGGGAATCAGCACTTAGCAACCACCTT
1 GGGGAATCAGCACTTAGCAACCCCCTT
9946289 TTTATTCAAT
Statistics
Matches: 216, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 216 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCG
Found at i:9946658 original size:30 final size:30
Alignment explanation
Indices: 9946624--9946681 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
9946614 CCACCCAACT
9946624 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * * *
9946654 TTTTGCATATTTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
9946682 GCTCGGAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:9953247 original size:102 final size:102
Alignment explanation
Indices: 9953124--9953424 Score: 530
Period size: 102 Copynumber: 3.0 Consensus size: 102
9953114 CCAATGAGTC
** *
9953124 GGGGAATCAGCACTTAGCAACCCTTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
9953189 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCG
66 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCG
*
9953226 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
* * *
9953291 CCAATGAGTCGGGGAATCAGCACTTAGCAATCCCTTG
66 CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCG
*
9953328 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
9953393 CCAATGATTCGGGGAATCAGCACTTAGCAACC
66 CCAATGATTCGGGGAATCAGCACTTAGCAACC
9953425 ACCTTTTTAT
Statistics
Matches: 188, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 188 1.00
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (102 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
CCAATGATTCGGGGAATCAGCACTTAGCAACCCCTCG
Found at i:9953861 original size:11 final size:12
Alignment explanation
Indices: 9953833--9953866 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
9953823 GTCCAAACGT
9953833 CGAAATTTTTGGA
1 CGAAATTTTT-GA
9953846 CGAAATTTTT-A
1 CGAAATTTTTGA
9953857 CGAAATTTTT
1 CGAAATTTTT
9953867 CCGTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.52
13 10 0.48
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (12 bp):
CGAAATTTTTGA
Found at i:9956557 original size:24 final size:24
Alignment explanation
Indices: 9956507--9956558 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
9956497 AATTAAAGTC
* **
9956507 AAATATATTATGTTAATAAATGTT
1 AAATATATTATCTTAATAAATACT
9956531 AAATATATTATACTT-ATAAATACT
1 AAATATATTAT-CTTAATAAATACT
9956555 AAAT
1 AAAT
9956559 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (24 bp):
AAATATATTATCTTAATAAATACT
Found at i:9971429 original size:23 final size:23
Alignment explanation
Indices: 9971395--9971461 Score: 100
Period size: 23 Copynumber: 2.9 Consensus size: 23
9971385 GTGTTATTGA
*
9971395 TCAATGGTAGCTACGGCTACATAT
1 TCAATGGTAGCTTCGGCTACAT-T
*
9971419 T-AGTGGTAGCTTCGGCTACATT
1 TCAATGGTAGCTTCGGCTACATT
9971441 TCAATGGTAGCTTCGGCTACA
1 TCAATGGTAGCTTCGGCTACA
9971462 AATCAGTGTG
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
22 2 0.05
23 36 0.92
24 1 0.03
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (23 bp):
TCAATGGTAGCTTCGGCTACATT
Found at i:9971958 original size:16 final size:16
Alignment explanation
Indices: 9971937--9971994 Score: 80
Period size: 16 Copynumber: 3.6 Consensus size: 16
9971927 CATTTGGTTC
9971937 GCTGTAATAGAATAGA
1 GCTGTAATAGAATAGA
* *
9971953 GCTGTAGTTGAATAGA
1 GCTGTAATAGAATAGA
*
9971969 GCTGTAATGGAATAGA
1 GCTGTAATAGAATAGA
*
9971985 ACTGTAATAG
1 GCTGTAATAG
9971995 TAATTCAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.38, C:0.07, G:0.28, T:0.28
Consensus pattern (16 bp):
GCTGTAATAGAATAGA
Found at i:9972027 original size:45 final size:44
Alignment explanation
Indices: 9971974--9972066 Score: 152
Period size: 44 Copynumber: 2.1 Consensus size: 44
9971964 ATAGAGCTGT
9971974 AATGGAATAGAACTGTAATAGTAATTCAAT-TGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGT-ATTC-ATGTGTTTGGTTGAATGG
*
9972019 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATGG
9972063 AATG
1 AATG
9972067 ATGTTGTAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.50
45 22 0.48
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCATGTGTTTGGTTGAATGG
Found at i:9972286 original size:17 final size:19
Alignment explanation
Indices: 9972225--9972278 Score: 108
Period size: 19 Copynumber: 2.8 Consensus size: 19
9972215 TTATTATTAA
9972225 ATATAATTTAATAAAAAAT
1 ATATAATTTAATAAAAAAT
9972244 ATATAATTTAATAAAAAAT
1 ATATAATTTAATAAAAAAT
9972263 ATATAATTTAATAAAA
1 ATATAATTTAATAAAA
9972279 TTCTTAATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
ATATAATTTAATAAAAAAT
Found at i:9972308 original size:75 final size:76
Alignment explanation
Indices: 9972174--9972315 Score: 173
Period size: 75 Copynumber: 1.9 Consensus size: 76
9972164 AATAAGATTA
***
9972174 TTAATATAAATAATAAATAATTTAATCTTATTTTAACATAATTATTATTAAATATAATTTAATAA
1 TTAATATAAATAATAAATAATTTAATAAAATTTTAACATAATTATTATT-AATATAATTTAATAA
9972239 AAAATATATAAT
65 AAAATATATAAT
* * * *
9972251 TTAATA-AAA-AATATATAATTTAATAAAATTCTTAATATAATTATTCTT-ATATGAATTTACTA
1 TTAATATAAATAATAAATAATTTAATAAAATT-TTAACATAATTATTATTAATAT-AATTTAATA
9972313 AAA
64 AAA
9972316 TCATAATATA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
74 4 0.07
75 28 0.50
76 18 0.32
77 6 0.11
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.44
Consensus pattern (76 bp):
TTAATATAAATAATAAATAATTTAATAAAATTTTAACATAATTATTATTAATATAATTTAATAAA
AAATATATAAT
Found at i:9973571 original size:37 final size:38
Alignment explanation
Indices: 9973528--9973603 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
9973518 GGTTGAGGAA
* *
9973528 AGGGAAAAAA-AACAATTACTTTACCAAAATGGATCCC
1 AGGGAAAAAAGAACAACTACGTTACCAAAATGGATCCC
*
9973565 AGGGAAAAAAGAGCAACTACGTTACCAAAATGGATCCC
1 AGGGAAAAAAGAACAACTACGTTACCAAAATGGATCCC
9973603 A
1 A
9973604 ATACAAGAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
37 10 0.29
38 25 0.71
ACGTcount: A:0.47, C:0.20, G:0.17, T:0.16
Consensus pattern (38 bp):
AGGGAAAAAAGAACAACTACGTTACCAAAATGGATCCC
Found at i:9976383 original size:49 final size:49
Alignment explanation
Indices: 9976324--9976459 Score: 211
Period size: 49 Copynumber: 2.8 Consensus size: 49
9976314 AAGTGATATG
*
9976324 TGATTCCGTGTAAGACCATAGTTGGGCTATGGCATC-AGTATATGTTATA
1 TGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGA-TATATGTTATA
* * *
9976373 TGATTACGTGTAAGACTATAGCTGGGCTATGGCATCGATATATGTTATG
1 TGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGATATATGTTATA
*
9976422 TGATTACGTGTAAGACCATAGTTGGACTATGGCATCGA
1 TGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGA
9976460 GAAAAGTACT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
49 78 0.99
50 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (49 bp):
TGATTACGTGTAAGACCATAGTTGGGCTATGGCATCGATATATGTTATA
Found at i:9980237 original size:41 final size:41
Alignment explanation
Indices: 9980175--9980305 Score: 145
Period size: 41 Copynumber: 3.2 Consensus size: 41
9980165 TCAGATTTAT
* * * *
9980175 TGCCAGTGAAATAATTCAGACTTTAGGTCTAGCAGGCTTGA
1 TGCCGGTGAAATAATTCAGACTATACGTCTAGCAGGCTTAA
*
9980216 TGCCGGTGAAATTATTCAGACTATACGTCTAGCAGGCTTAA
1 TGCCGGTGAAATAATTCAGACTATACGTCTAGCAGGCTTAA
* *** * * *
9980257 TGCCGGTGATACGTTTCAAACTATAAGTCTAGCAGGCTAAA
1 TGCCGGTGAAATAATTCAGACTATACGTCTAGCAGGCTTAA
*
9980298 AGCCGGTG
1 TGCCGGTG
9980306 TGCCAAATCA
Statistics
Matches: 77, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 77 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (41 bp):
TGCCGGTGAAATAATTCAGACTATACGTCTAGCAGGCTTAA
Found at i:9983014 original size:24 final size:25
Alignment explanation
Indices: 9982965--9983012 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
9982955 GAAAAATATT
9982965 AAATATATATATATTTTTATTTTTA
1 AAATATATATATATTTTTATTTTTA
*
9982990 AAATATA-ATAGTTTTTTTATTTT
1 AAATATATATA-TATTTTTATTTT
9983013 AAGTTTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (25 bp):
AAATATATATATATTTTTATTTTTA
Found at i:9983123 original size:9 final size:9
Alignment explanation
Indices: 9983109--9983136 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
9983099 TTTTGTTCCA
9983109 ACAATTAAT
1 ACAATTAAT
9983118 ACAATTAAT
1 ACAATTAAT
9983127 ACAATTAAT
1 ACAATTAAT
9983136 A
1 A
9983137 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:9983158 original size:68 final size:66
Alignment explanation
Indices: 9983079--9983220 Score: 239
Period size: 68 Copynumber: 2.1 Consensus size: 66
9983069 TCAAGTTTGT
* *
9983079 TTTACTAATCAAATGTTAGATTTTGTTCCAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAAT--AATTAATAATTTGAT
9983144 AAA
64 AAA
9983147 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTAATAATTTGATAA
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTAATAATTTGATAA
*
9983212 T
66 A
9983213 TTTACTAA
1 TTTACTAA
9983221 CAATTAGTTT
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
66 25 0.35
68 46 0.65
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (66 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTAATAATTTGATAA
A
Found at i:9987325 original size:9 final size:9
Alignment explanation
Indices: 9987311--9987341 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
9987301 TTTATACCTA
9987311 TTTTTTCTT
1 TTTTTTCTT
9987320 TTTTTTCTCT
1 TTTTTTCT-T
9987330 TTTTTTCTT
1 TTTTTTCTT
9987339 TTT
1 TTT
9987342 CTTTTCTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:10009790 original size:68 final size:69
Alignment explanation
Indices: 10009659--10009797 Score: 217
Period size: 68 Copynumber: 2.0 Consensus size: 69
10009649 GACTTGCAAA
* * *
10009659 ATTGTGAAAAACTAGATAGGCAAAATAAGTACAAGCAATAATGCAAATTAGGTTTCCCAAGATAT
1 ATTGTGAAAAACTAGATAGGAAAAATAAGTAAAAGCAATAATACAAATTAGGTTTCCCAAGATAT
10009724 AGAC
66 AGAC
* **
10009728 ATTGTGAAAAACTAGATAGGAAAAAT-AGTAAAAGCAATGATACAAATTAGGTTTCCTGAGATAT
1 ATTGTGAAAAACTAGATAGGAAAAATAAGTAAAAGCAATAATACAAATTAGGTTTCCCAAGATAT
10009792 AGAC
66 AGAC
10009796 AT
1 AT
10009798 GAAGAAGGGA
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
68 39 0.61
69 25 0.39
ACGTcount: A:0.47, C:0.11, G:0.18, T:0.24
Consensus pattern (69 bp):
ATTGTGAAAAACTAGATAGGAAAAATAAGTAAAAGCAATAATACAAATTAGGTTTCCCAAGATAT
AGAC
Found at i:10011967 original size:15 final size:15
Alignment explanation
Indices: 10011947--10011975 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10011937 TGGAACCAAA
10011947 TAATCATAAATTATG
1 TAATCATAAATTATG
10011962 TAATCATAAATTAT
1 TAATCATAAATTAT
10011976 CTAAAATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.41
Consensus pattern (15 bp):
TAATCATAAATTATG
Found at i:10038514 original size:52 final size:46
Alignment explanation
Indices: 10038495--10038870 Score: 404
Period size: 46 Copynumber: 8.3 Consensus size: 46
10038485 TGACAAGTGG
* *
10038495 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
10038541 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* *
10038587 AAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 ------AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* ** *
10038639 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAA
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
*
10038685 AAAGTG---A-T-A-AG--T--GCTATACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
* * *
10038721 AAAGTGATAAGTGTTAGCCTT-AGCTACACTTATCTGATCAAGTGAG
1 AAAGTGATAAGTGATAG-CTTCGGCTACACTTATCTGATCAAGTGAC
* *
10038767 AAAGTGATAAGTGGTAGCCTT-AGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGATAG-CTTCGGCTACACTTATCTGATCAAGTGAC
* * * * *
10038813 AAAGGGATAAGTGGTAGCCT-AGCTACACTTATCTGATC-AGGGAC
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
10038857 -AAGTGATAAGTGAT
1 AAAGTGATAAGTGAT
10038871 CATACGTAAG
Statistics
Matches: 291, Mismatches: 23, Indels: 35
0.83 0.07 0.10
Matches are distributed among these distances:
36 28 0.10
38 1 0.00
39 1 0.00
40 3 0.01
42 3 0.01
43 13 0.04
44 5 0.02
45 21 0.07
46 172 0.59
52 44 0.15
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.28
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
Found at i:10038549 original size:98 final size:98
Alignment explanation
Indices: 10038429--10038697 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
10038419 TTTGAGTACT
10038429 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
10038494 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* **
10038527 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
*
10038592 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
* *
10038625 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTG-ACAAGT
*
10038690 GATAAGTG
65 GAAAAGTG
10038698 CTATACTTAT
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 147 0.92
99 12 0.08
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.29
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:10038707 original size:36 final size:36
Alignment explanation
Indices: 10038661--10038733 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
10038651 GGTAGCTTTA
10038661 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
10038697 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
10038733 G
1 G
10038734 TTAGCCTTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.29
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:10038752 original size:82 final size:82
Alignment explanation
Indices: 10038615--10038868 Score: 334
Period size: 82 Copynumber: 3.0 Consensus size: 82
10038605 GATAGCTTCG
* *
10038615 GCTATACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAA
1 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAA
10038680 GTGAAAAAGTGATAAGT
66 GTGAAAAAGTGATAAGT
*
10038697 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGTTAGCCTTAGCTACACTTATCTGATCAA
1 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAA
*
10038762 GTGAGAAAGTGATAAGTGGT
66 GTGAAAAAGTGATAA---GT
*
10038782 AGCCTTAGCTACACTTATCTGATCAAGTGACAAAGGGATAAGTGGTAGCC-TAGCTACACTTATC
1 -G-C-TA--T--ACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATC
* *
10038846 TGATC-AG-GGACAAGTGATAAGT
59 TGATCAAGTGAAAAAGTGATAAGT
10038868 G
1 G
10038869 ATCATACGTA
Statistics
Matches: 153, Mismatches: 9, Indels: 17
0.85 0.05 0.09
Matches are distributed among these distances:
82 76 0.50
85 3 0.02
86 3 0.02
87 1 0.01
88 2 0.01
89 10 0.07
90 3 0.02
91 19 0.12
92 36 0.24
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.28
Consensus pattern (82 bp):
GCTATACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAA
GTGAAAAAGTGATAAGT
Found at i:10045397 original size:46 final size:46
Alignment explanation
Indices: 10045331--10045630 Score: 498
Period size: 46 Copynumber: 6.6 Consensus size: 46
10045321 TTTGAGTACT
* *
10045331 TCTGATC-AGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACGTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
10045376 TCTGATCAAGTGACAAAGTGATAAGTGGTAACTTTACCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
10045422 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
10045468 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTGCACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
10045514 TCTGATCAAGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
10045560 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
10045606 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
10045631 ATCATACGTA
Statistics
Matches: 240, Mismatches: 14, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
44 12 0.05
45 12 0.05
46 216 0.90
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (46 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:10046836 original size:46 final size:46
Alignment explanation
Indices: 10046770--10046988 Score: 280
Period size: 46 Copynumber: 4.7 Consensus size: 46
10046760 AGCTATTACT
10046770 TATCACTT-TC-CACTTGTCACTTGATCAGATAAGTATAGCCGAAGC
1 TATCACTTATCAC-CTTGTCACTTGATCAGATAAGTATAGCCGAAGC
10046815 TATCACTTATCACCTTGTCACTTGATCAGATAAGTATAGCCGAAGC
1 TATCACTTATCACCTTGTCACTTGATCAGATAAGTATAGCCGAAGC
*
10046861 TATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGC
1 TATCACTTATCACCTTGTCACTTGATCAGATAAGTATAGCCGAAGC
* * **
10046907 TATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGC
1 TATCACTTATCA-----C-CTTGTCACTTGATCAGATAAGTATAGCCGAAGC
* * * *
10046959 TACCACTTATCACTTTATCTCTTGATCAGA
1 TATCACTTATCACCTTGTCACTTGATCAGA
10046989 AGTACTCAAA
Statistics
Matches: 155, Mismatches: 11, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
45 8 0.05
46 105 0.68
47 2 0.01
51 1 0.01
52 39 0.25
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (46 bp):
TATCACTTATCACCTTGTCACTTGATCAGATAAGTATAGCCGAAGC
Found at i:10054555 original size:5 final size:5
Alignment explanation
Indices: 10054545--10054570 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10054535 AATTTTTAAG
10054545 AATAT AATAT AATAT AATAT AATAT A
1 AATAT AATAT AATAT AATAT AATAT A
10054571 TTTTAATCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:10058137 original size:14 final size:15
Alignment explanation
Indices: 10058087--10058141 Score: 60
Period size: 15 Copynumber: 3.8 Consensus size: 15
10058077 ACTCTCCTCA
*
10058087 TTCTTTTCTTTCTTT
1 TTCTTTTCTCTCTTT
* *
10058102 TTCTTTTCACTCTTA
1 TTCTTTTCTCTCTTT
*
10058117 TTGTTTT-TCTCTTT
1 TTCTTTTCTCTCTTT
10058131 TTCTTTT-TCTC
1 TTCTTTTCTCTC
10058142 GATCAATAGA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
14 15 0.45
15 18 0.55
ACGTcount: A:0.04, C:0.22, G:0.02, T:0.73
Consensus pattern (15 bp):
TTCTTTTCTCTCTTT
Found at i:10071249 original size:16 final size:16
Alignment explanation
Indices: 10071228--10071258 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10071218 TGAGTTGAGA
*
10071228 AAATTATTTAATTAAG
1 AAATTAATTAATTAAG
10071244 AAATTAATTAATTAA
1 AAATTAATTAATTAA
10071259 TTTAAATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
AAATTAATTAATTAAG
Found at i:10073438 original size:30 final size:30
Alignment explanation
Indices: 10073381--10073484 Score: 145
Period size: 30 Copynumber: 3.3 Consensus size: 30
10073371 AATGTTTTTA
*
10073381 AATTGATTTGTATATGTATACATATATATTGTTG
1 AATTGATTTGTATATG--T--ATATATATTGTCG
*
10073415 AATTGATTTGTATATGTATATATATTGCCG
1 AATTGATTTGTATATGTATATATATTGTCG
*
10073445 AATTAATTTGTATATGTATATATATTGTCG
1 AATTGATTTGTATATGTATATATATTGTCG
10073475 AATTGATTTG
1 AATTGATTTG
10073485 AGCATTGGAT
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
30 48 0.74
32 1 0.02
34 16 0.25
ACGTcount: A:0.32, C:0.04, G:0.15, T:0.49
Consensus pattern (30 bp):
AATTGATTTGTATATGTATATATATTGTCG
Found at i:10074881 original size:16 final size:17
Alignment explanation
Indices: 10074860--10074891 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10074850 ATTGGGTTGA
10074860 GAAAATT-ATTTAATAG
1 GAAAATTAATTTAATAG
10074876 GAAAATTAATTTAATA
1 GAAAATTAATTTAATA
10074892 AATACAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (17 bp):
GAAAATTAATTTAATAG
Found at i:10080162 original size:16 final size:17
Alignment explanation
Indices: 10080136--10080170 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
10080126 TATTTTTTTT
10080136 ATCACCAATACAATGTG
1 ATCACCAATACAATGTG
10080153 ATCA-CAATACAATGTG
1 ATCACCAATACAATGTG
10080169 AT
1 AT
10080171 AGCTTTCTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.43, C:0.20, G:0.11, T:0.26
Consensus pattern (17 bp):
ATCACCAATACAATGTG
Found at i:10081081 original size:11 final size:11
Alignment explanation
Indices: 10081042--10081085 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
10081032 ACCTAAATCC
10081042 TTTCTCTC-AA
1 TTTCTCTCAAA
* *
10081052 CTTCTCTCCAA
1 TTTCTCTCAAA
10081063 TATTCTCTCAAA
1 T-TTCTCTCAAA
10081075 TTTCTCTCAAA
1 TTTCTCTCAAA
10081086 AAAAGCTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 7 0.24
11 12 0.41
12 10 0.34
ACGTcount: A:0.25, C:0.32, G:0.00, T:0.43
Consensus pattern (11 bp):
TTTCTCTCAAA
Found at i:10083234 original size:21 final size:21
Alignment explanation
Indices: 10083188--10083234 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
10083178 AGATTCCTTA
*
10083188 CCGGAGGAACCAAAATCCCCG
1 CCGGAGCAACCAAAATCCCCG
* *
10083209 TCGGAGCAACCACAA-CCCCTG
1 CCGGAGCAACCAAAATCCCC-G
10083230 CCGGA
1 CCGGA
10083235 AGCTGGACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.30, C:0.40, G:0.23, T:0.06
Consensus pattern (21 bp):
CCGGAGCAACCAAAATCCCCG
Found at i:10086834 original size:126 final size:126
Alignment explanation
Indices: 10086606--10087020 Score: 652
Period size: 126 Copynumber: 3.3 Consensus size: 126
10086596 GCCAAATAGG
*
10086606 AGCTACTGTAGCAAAAGTGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCC
1 AGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCC
* * *
10086671 TGCTTAAAGCGTTTTTGGCACTATTTGCTCATAAACGTCTGCTCGAAATTATTTTTTTAGA
66 TGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTTAGA
* *
10086732 AGTTACTGTAGCAAAAGCGCGTTCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCC
1 AGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCC
* * *
10086797 CGCTTAAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTACTCGAAATTATTTTTTCA-A
66 TGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTTAGA
* * *
10086857 GAGCTACTATAGCAAAAGCGAGTCCACATGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
1 -AGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
* * *
10086922 CTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTCTCGAAGTTATTTTTTTCAGG
65 CTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTT-AGA
* *
10086985 AGCTACTGTAGCAAAAGAGCGTTCACGTGGGAGCTT
1 AGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTT
10087021 TTTTAAATTA
Statistics
Matches: 261, Mismatches: 25, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
125 1 0.00
126 228 0.87
127 32 0.12
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (126 bp):
AGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCC
TGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTTAGA
Found at i:10093710 original size:14 final size:15
Alignment explanation
Indices: 10093667--10093710 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
10093657 AAATTAATAT
*
10093667 TTTTAATTTTTCAATA
1 TTTTAATTTTT-ACTA
*
10093683 TTTTAATTTCTACTA
1 TTTTAATTTTTACTA
10093698 TTTT-ATTTTTACT
1 TTTTAATTTTTACT
10093711 TTATTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 8 0.32
15 7 0.28
16 10 0.40
ACGTcount: A:0.25, C:0.09, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTTAATTTTTACTA
Found at i:10095078 original size:9 final size:9
Alignment explanation
Indices: 10095064--10095094 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
10095054 ATTAAACGAA
10095064 TCGAGTTAT
1 TCGAGTTAT
*
10095073 TCGAGTTAA
1 TCGAGTTAT
10095082 TCGAGTTAT
1 TCGAGTTAT
10095091 TCGA
1 TCGA
10095095 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:10095178 original size:9 final size:9
Alignment explanation
Indices: 10095149--10095185 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
10095139 TGAGTTTTCG
10095149 AATTCGAAT
1 AATTCGAAT
*
10095158 AACTCGAAT
1 AATTCGAAT
10095167 AATTCGAAT
1 AATTCGAAT
*
10095176 AATTCAAAT
1 AATTCGAAT
10095185 A
1 A
10095186 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:10098178 original size:16 final size:17
Alignment explanation
Indices: 10098157--10098188 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10098147 CCTATTTAAT
10098157 ATTAAA-TTAATATAAG
1 ATTAAATTTAATATAAG
10098173 ATTAAATTTAATATAA
1 ATTAAATTTAATATAA
10098189 ATCTTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (17 bp):
ATTAAATTTAATATAAG
Found at i:10098325 original size:38 final size:38
Alignment explanation
Indices: 10098260--10098332 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
10098250 AGAAAATCAT
*
10098260 TTTAATATTAAATTAATAAAATACTATTAAGATAAGTA
1 TTTAATATTAAATTAATAAAATACTATTAAAATAAGTA
*
10098298 TTTAAT-TTAATTTAATATTAAAT-CTATTAAAATAA
1 TTTAATATTAAATTAATA--AAATACTATTAAAATAA
10098333 AATTATGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
37 10 0.32
38 17 0.55
39 4 0.13
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (38 bp):
TTTAATATTAAATTAATAAAATACTATTAAAATAAGTA
Found at i:10100498 original size:15 final size:15
Alignment explanation
Indices: 10100478--10100507 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10100468 TTCACTATTA
*
10100478 TGTCTTTTGTATTTT
1 TGTCTTTTATATTTT
10100493 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
10100508 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.07, G:0.10, T:0.73
Consensus pattern (15 bp):
TGTCTTTTATATTTT
Found at i:10103942 original size:49 final size:50
Alignment explanation
Indices: 10103869--10103972 Score: 165
Period size: 49 Copynumber: 2.1 Consensus size: 50
10103859 GGTTTTGACC
*
10103869 CTAATCAGAATAGTGGTTTCGGGACCACAAATCCGAGT-TAAAAAATATT
1 CTAATCAGAATAGTGGTTTCGGGACCACAAATCCGAGTCAAAAAAATATT
* *
10103918 CTAATCGGAATAGTGGTTTTGGGACCACAAATCCGAGTCAAAAAAATATT
1 CTAATCAGAATAGTGGTTTCGGGACCACAAATCCGAGTCAAAAAAATATT
*
10103968 TTAAT
1 CTAAT
10103973 ATTATTTTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
49 36 0.72
50 14 0.28
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (50 bp):
CTAATCAGAATAGTGGTTTCGGGACCACAAATCCGAGTCAAAAAAATATT
Found at i:10111303 original size:41 final size:40
Alignment explanation
Indices: 10111258--10111402 Score: 227
Period size: 41 Copynumber: 3.5 Consensus size: 40
10111248 GACTTTAAGT
*
10111258 CTAGCAGGCTAAGTGCCGGTGATCTGAACCAGGTTATGAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTAT-AAC
*
10111299 CTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTAT-AAC
* *
10111340 CTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAA-C
10111381 CTAGCAGGCTAAGTGCCGGTGA
1 CTAGCAGGCTAAGTGCCGGTGA
10111403 ATATGTTAAA
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 2 0.02
41 94 0.98
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (40 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAC
Found at i:10121045 original size:34 final size:33
Alignment explanation
Indices: 10121007--10121077 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 33
10120997 TAAACCTATT
*
10121007 ATATTTTTATAA-TATTATAATACAATT-TATTAAA
1 ATATTTTTATAATTATGAT-ATA-AATTATA-TAAA
10121041 ATATTTTTATAATTATGATATAAATTATATAAA
1 ATATTTTTATAATTATGATATAAATTATATAAA
10121074 ATAT
1 ATAT
10121078 AATATGTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
33 12 0.35
34 17 0.50
35 5 0.15
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (33 bp):
ATATTTTTATAATTATGATATAAATTATATAAA
Found at i:10121165 original size:16 final size:17
Alignment explanation
Indices: 10121144--10121182 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
10121134 TTTTTACAAA
10121144 ATAATATA-TTAACTAT
1 ATAATATATTTAACTAT
*
10121160 ATAATATATTTCACTAT
1 ATAATATATTTAACTAT
10121177 ATAATA
1 ATAATA
10121183 ATAAAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (17 bp):
ATAATATATTTAACTAT
Found at i:10121749 original size:31 final size:32
Alignment explanation
Indices: 10121683--10121750 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 32
10121673 TTAAATTTGT
* **
10121683 AAAAATTTTAATTAGACCTTTCAAAATCTTTA
1 AAAAATTTTAATTAAACCTTTCAAAATCTAAA
10121715 AAAAATTTTAA-TAAACCTTTCAAAAT-TAAA
1 AAAAATTTTAATTAAACCTTTCAAAATCTAAA
10121745 AAAAAT
1 AAAAAT
10121751 AGCGGCGTGG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 8 0.24
31 14 0.42
32 11 0.33
ACGTcount: A:0.53, C:0.10, G:0.01, T:0.35
Consensus pattern (32 bp):
AAAAATTTTAATTAAACCTTTCAAAATCTAAA
Found at i:10125607 original size:79 final size:77
Alignment explanation
Indices: 10125478--10125627 Score: 246
Period size: 79 Copynumber: 1.9 Consensus size: 77
10125468 ACAAGCCACA
**
10125478 GAAAATAAGAATGCAAAAGGGAGAAATTTGAGGGAATGCTCTTAAGAATTATTATTGCTCCAAAC
1 GAAAATAAGAACACAAAAGGGAGAAATTTGAGGGAATGCTCTTAAGAATTATTATTGCTCCAAAC
10125543 TCAAGTGTCACG
66 TCAAGTGTCACG
* *
10125555 GAAAATAAGAACACAAGAGAGGGGGAAATTTGAGTGAATGCTCTTAAGAATTATTATTGCTCCAA
1 GAAAATAAGAACACAA-A-AGGGAGAAATTTGAGGGAATGCTCTTAAGAATTATTATTGCTCCAA
10125620 ACTCAAGT
64 ACTCAAGT
10125628 ATTTTACAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 14 0.21
78 1 0.01
79 52 0.78
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.25
Consensus pattern (77 bp):
GAAAATAAGAACACAAAAGGGAGAAATTTGAGGGAATGCTCTTAAGAATTATTATTGCTCCAAAC
TCAAGTGTCACG
Found at i:10125768 original size:23 final size:22
Alignment explanation
Indices: 10125725--10125782 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
10125715 AAAGGGTATC
* *
10125725 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
10125746 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
10125769 TGCATATCATATCT
1 TACAAATCATATCT
10125783 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:10126497 original size:44 final size:44
Alignment explanation
Indices: 10126448--10126583 Score: 123
Period size: 44 Copynumber: 3.1 Consensus size: 44
10126438 TTATTTTCAG
10126448 TCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGTCTTCGA
1 TCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGTCTTCGA
* * * * ** * ** * *
10126492 TCTGCTTCGCTACCAATA-T-AAGAAGACAAGATCTACTATCTTCAA
1 TCTGCTCCGCT-GCAA-ACTCAGGGAGGTAAG-GCTGGTGTCTTCGA
*
10126537 TCTGCTCCGCTGTAAACTCAGGGAGGTAAGGCTGGTGTCTTCGA
1 TCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGTCTTCGA
10126581 TCT
1 TCT
10126584 ACTTCGCTAC
Statistics
Matches: 64, Mismatches: 23, Indels: 10
0.66 0.24 0.10
Matches are distributed among these distances:
43 1 0.02
44 32 0.50
45 30 0.47
46 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (44 bp):
TCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGTCTTCGA
Found at i:10126542 original size:89 final size:89
Alignment explanation
Indices: 10126331--10126612 Score: 368
Period size: 89 Copynumber: 3.2 Consensus size: 89
10126321 CACTACTGCT
* * * * * * *
10126331 TAGGGAGACAAGATCTACAATTTTTAA-CGTACTCCACTGCAAACTCAGAGAGGCAAGGCTGGTG
1 TAGGAAGACAAGATCTACTATTTTCAATC-TGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTG
* * * *
10126395 TTTTCGAATCTGCTTCACTGCCAGTA
65 TCTTCG-ATCTGCTTCGCTACCAATA
** *
10126421 TAGGAAGACAAGATCTGTTATTTTCAGTCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGT
1 TAGGAAGACAAGATCTACTATTTTCAATCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGT
10126486 CTTCGATCTGCTTCGCTACCAATA
66 CTTCGATCTGCTTCGCTACCAATA
* * *
10126510 TAAGAAGACAAGATCTACTATCTTCAATCTGCTCCGCTGTAAACTCAGGGAGGTAAGGCTGGTGT
1 TAGGAAGACAAGATCTACTATTTTCAATCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGT
*
10126575 CTTCGATCTACTTCGCTACCAATA
66 CTTCGATCTGCTTCGCTACCAATA
*
10126599 CAGGAAGACAAGAT
1 TAGGAAGACAAGAT
10126613 TTGCAACTTT
Statistics
Matches: 168, Mismatches: 23, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
89 110 0.65
90 57 0.34
91 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (89 bp):
TAGGAAGACAAGATCTACTATTTTCAATCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGT
CTTCGATCTGCTTCGCTACCAATA
Found at i:10126923 original size:42 final size:42
Alignment explanation
Indices: 10126868--10127031 Score: 170
Period size: 42 Copynumber: 3.9 Consensus size: 42
10126858 GATTTGCTAT
* *
10126868 CTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTTA
1 CTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGACTTTA
** * * *
10126910 CTTCAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTATTGG
1 CTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGACT-TT-A
* * *
10126954 CTTTAATCTACTTCACTGCAACTTCAGAGAGATAAG-GTTTA
1 CTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGACTTTA
* * *
10126995 ATAT-GATCTACTCTACTGCAACTTCAGAGAGATAAGA
1 CT-TCAATCTACTCCACTGCAACTTCAGAGAGATAAGA
10127032 TTTGTGATTT
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
41 30 0.29
42 38 0.37
43 3 0.03
44 31 0.30
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (42 bp):
CTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGACTTTA
Found at i:10126973 original size:44 final size:42
Alignment explanation
Indices: 10126878--10127031 Score: 159
Period size: 44 Copynumber: 3.6 Consensus size: 42
10126868 CTTCAGTCTG
*
10126878 CTCCACTGCAACTTCAGAGAGATAAGACTTTACTTCAATCCG
1 CTCCACTGCAACTTCAGAGAGATAAGACTTTACTTCAATCCA
* * * * *
10126920 CTCCACTGCAACTTCAGAGAGATAGGATTATTGGCTTTAATCTA
1 CTCCACTGCAACTTCAGAGAGATAAGACT-TT-ACTTCAATCCA
* * * * *
10126964 CTTCACTGCAACTTCAGAGAGATAAG-GTTTAATAT-GATCTA
1 CTCCACTGCAACTTCAGAGAGATAAGACTTTACT-TCAATCCA
*
10127005 CTCTACTGCAACTTCAGAGAGATAAGA
1 CTCCACTGCAACTTCAGAGAGATAAGA
10127032 TTTGTGATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
41 30 0.32
42 30 0.32
43 3 0.03
44 31 0.33
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (42 bp):
CTCCACTGCAACTTCAGAGAGATAAGACTTTACTTCAATCCA
Found at i:10127213 original size:44 final size:44
Alignment explanation
Indices: 10127141--10127595 Score: 360
Period size: 44 Copynumber: 10.2 Consensus size: 44
10127131 GCTTTCTTCA
* * * *
10127141 ATAAGACTTGTAACTTTAATCCGGTCCACTGTAACTTCAGAGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* *
10127185 ATAGGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* **
10127229 ATAGGATTAT-TGGCTTTAATCTGCTCCACTGCAACTTCAGAGAG
1 ATAAGATT-TGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* * ** * * * *
10127273 ATAAGATTTGCCATCTGCAGTCTGCCCCACTGCAACTTCAGGGGG
1 ATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* * ** *
10127318 ATAAAACTTGCTTTCTTCAATCTGCTCCACTGCAACTTCA-AGGAG
1 ATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAGA-GAG
* * * *
10127363 ATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAGGGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* ** * *
10127407 ATAGGATTAT-TGGCTTTAATCTGCTCCACTGCAACTTTAGAAAG
1 ATAAGATT-TGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* * * * * * * *
10127451 ATAAGATTTGCCATCTTCAGTCTACCCCACTACAACTTCAG-GGG
1 ATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* ** * * * *
10127495 AATAAGACTTGCTTTCTTCAGTCTGCTCCACTGTAACTTCAGGGAG
1 -ATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* * * *
10127541 ATAAGACTTGTAACTTTAATCCGCTCCATTGCAACCTCAGAGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
10127585 ATAAGATTTGT
1 ATAAGATTTGT
10127596 GGTTTCACCG
Statistics
Matches: 327, Mismatches: 74, Indels: 20
0.78 0.18 0.05
Matches are distributed among these distances:
43 2 0.01
44 187 0.57
45 136 0.42
46 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
Found at i:10127464 original size:178 final size:178
Alignment explanation
Indices: 10127165--10127592 Score: 687
Period size: 178 Copynumber: 2.4 Consensus size: 178
10127155 TTTAATCCGG
* * * *
10127165 TCCACTGTAACTTC-AGAGAGATAGGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
1 TCCACTGTAACTTCAAG-GAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAGGGAG
*
10127229 ATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCCATCTGCAGT
65 ATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAAAGATAAGATTTGCCATCTGCAGT
* * *
10127294 CTGCCCCACTGCAACTTCAGGGGGATAAAACTTGCTTTCTTCAATCTGC
130 CTACCCCACTACAACTTCAGGGGAATAAAACTTGCTTTCTTCAATCTGC
*
10127343 TCCACTGCAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAGGGAGA
1 TCCACTGTAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAGGGAGA
* *
10127408 TAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTTAGAAAGATAAGATTTGCCATCTTCAGTC
66 TAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAAAGATAAGATTTGCCATCTGCAGTC
* *
10127473 TACCCCACTACAACTTCAGGGGAATAAGACTTGCTTTCTTCAGTCTGC
131 TACCCCACTACAACTTCAGGGGAATAAAACTTGCTTTCTTCAATCTGC
* * *
10127521 TCCACTGTAACTTCAGGGAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACCTCAGAGAGA
1 TCCACTGTAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAGGGAGA
*
10127586 TAAGATT
66 TAGGATT
10127593 TGTGGTTTCA
Statistics
Matches: 231, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
178 229 0.99
179 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (178 bp):
TCCACTGTAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAGGGAGA
TAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAAAGATAAGATTTGCCATCTGCAGTC
TACCCCACTACAACTTCAGGGGAATAAAACTTGCTTTCTTCAATCTGC
Found at i:10127587 original size:134 final size:133
Alignment explanation
Indices: 10127141--10127594 Score: 439
Period size: 134 Copynumber: 3.4 Consensus size: 133
10127131 GCTTTCTTCA
* * * * *
10127141 ATAAGACTTGTAACTTTAATCCGGTCCACTGTAACTTCAGAGAGATAGGATTTG-TAACTTTAAT
1 ATAAGACTTGTAACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAAT
* * *
10127205 CTGCTCCACTGCAACTTCAGGGAGATAGGA-TTATTGGCTTTAATCTGCTCCACTGCAACTTCAG
66 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTT-ACTTTAATCTGCTCCACTGCAACTTCAG
*
10127269 AGAG
130 GGAG
* * * ** * * * * * * * *
10127273 ATAAGATTTGCCATCTGCAGTCTGCCCCACTGCAACTTCAGGGGGATAAAACTTGCTTTCTTCAA
1 ATAAGACTTG-TAACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAA
* * * *
10127338 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAG
65 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTACTTTAATCTGCTCCACTGCAACTTCAG
10127403 GGAG
130 GGAG
* * ** * * * * *
10127407 ATAGGA-TTATTGGCTTTAATCTGCTCCACTGCAACTTTAGAAAGATAAGATTTGCCATCTTCAG
1 ATAAGACTT-GTAACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAA
* * * * * * *
10127471 TCTACCCCACTACAACTTCAGGG-GAATAAGACTTGCTTTCTTCAGTCTGCTCCACTGTAACTTC
65 TCTGCTCCACTGCAACTTCAGGGAG-ATAAGACTTG-TTACTTTAATCTGCTCCACTGCAACTTC
10127535 AGGGAG
128 AGGGAG
* *
10127541 ATAAGACTTGTAACTTTAATCCGCTCCATTGCAACCTCAGAGAGATAAGATTTG
1 ATAAGACTTGTAACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGATTTG
10127595 TGGTTTCACC
Statistics
Matches: 251, Mismatches: 64, Indels: 12
0.77 0.20 0.04
Matches are distributed among these distances:
132 10 0.04
133 99 0.39
134 137 0.55
135 5 0.02
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (133 bp):
ATAAGACTTGTAACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAAT
CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTACTTTAATCTGCTCCACTGCAACTTCAGG
GAG
Found at i:10127908 original size:24 final size:24
Alignment explanation
Indices: 10127872--10127927 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
10127862 CAAATTTCCC
* *
10127872 CCACTGTAGTCTTCATGGTTCAAA
1 CCACTGTAATCTTCAAGGTTCAAA
*
10127896 CCACTGTAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAA
10127920 CCACTGTA
1 CCACTGTA
10127928 CTTTTGGGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (24 bp):
CCACTGTAATCTTCAAGGTTCAAA
Found at i:10134657 original size:122 final size:121
Alignment explanation
Indices: 10134436--10134680 Score: 438
Period size: 122 Copynumber: 2.0 Consensus size: 121
10134426 AAACGAATGA
10134436 AAGTAAAAAAATAATTAATGATTAAACAATTAAATGGATAAATAAAAAAAGTTAAAAAAACGCTT
1 AAGTAAAAAAATAATTAATGATTAAACAATTAAATGGATAAATAAAAAAAGTTAAAAAAACGCTT
* *
10134501 AAGTCAGCCTAACTCTCACAATATGAAGATTCAACGAAATTCTTCCACCAAAATCC
66 AAGTCAACCTAACTCTCACAATATGAAGATTCAACGAAATTATTCCACCAAAATCC
*
10134557 AAGTAAAAAAATAATTAATGATTAAACAATTAAATGGATAAATAAAAAAA-TTAAAAAAAAACGT
1 AAGTAAAAAAATAATTAATGATTAAACAATTAAATGGATAAATAAAAAAAGTT--AAAAAAACGC
10134621 TTAAGTCAACCTAACTCTCACAATATGAAGATTCAACGAAATTATTCCACCAAAATCC
64 TTAAGTCAACCTAACTCTCACAATATGAAGATTCAACGAAATTATTCCACCAAAATCC
10134679 AA
1 AA
10134681 CTCAAATGAA
Statistics
Matches: 119, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
120 2 0.02
121 50 0.42
122 67 0.56
ACGTcount: A:0.53, C:0.15, G:0.08, T:0.24
Consensus pattern (121 bp):
AAGTAAAAAAATAATTAATGATTAAACAATTAAATGGATAAATAAAAAAAGTTAAAAAAACGCTT
AAGTCAACCTAACTCTCACAATATGAAGATTCAACGAAATTATTCCACCAAAATCC
Found at i:10134874 original size:79 final size:77
Alignment explanation
Indices: 10134745--10134894 Score: 246
Period size: 79 Copynumber: 1.9 Consensus size: 77
10134735 ACAAGCCACA
**
10134745 GAAAATAAGAATGCAAAAGGGAGAAATTTGAGGGAATGCTCTTAAGAATTATTATTGCTCCAAAC
1 GAAAATAAGAACACAAAAGGGAGAAATTTGAGGGAATGCTCTTAAGAATTATTATTGCTCCAAAC
10134810 TCAAGTGTCACG
66 TCAAGTGTCACG
* *
10134822 GAAAATAAGAACACAAGAGAGGGGGAAATTTGAGTGAATGCTCTTAAGAATTATTATTGCTCCAA
1 GAAAATAAGAACACAA-A-AGGGAGAAATTTGAGGGAATGCTCTTAAGAATTATTATTGCTCCAA
10134887 ACTCAAGT
64 ACTCAAGT
10134895 ATTTTACAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 14 0.21
78 1 0.01
79 52 0.78
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.25
Consensus pattern (77 bp):
GAAAATAAGAACACAAAAGGGAGAAATTTGAGGGAATGCTCTTAAGAATTATTATTGCTCCAAAC
TCAAGTGTCACG
Found at i:10134946 original size:48 final size:48
Alignment explanation
Indices: 10134875--10134974 Score: 191
Period size: 48 Copynumber: 2.1 Consensus size: 48
10134865 TTAAGAATTA
10134875 TTATTGCTCCAAACTCAAGTATTTTACAATGAAGGGAGAGGGCGCTAT
1 TTATTGCTCCAAACTCAAGTATTTTACAATGAAGGGAGAGGGCGCTAT
*
10134923 TTATTGCTCCAAACTCAAGTATTTTACAATGAAGGGAGAGGTCGCTAT
1 TTATTGCTCCAAACTCAAGTATTTTACAATGAAGGGAGAGGGCGCTAT
10134971 TTAT
1 TTAT
10134975 AGTTGAGCCT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (48 bp):
TTATTGCTCCAAACTCAAGTATTTTACAATGAAGGGAGAGGGCGCTAT
Found at i:10135083 original size:23 final size:22
Alignment explanation
Indices: 10135040--10135097 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
10135030 AAAGGGTATC
* *
10135040 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
10135061 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
10135084 TGCATATCATATCT
1 TACAAATCATATCT
10135098 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:10135812 original size:44 final size:44
Alignment explanation
Indices: 10135763--10135898 Score: 123
Period size: 44 Copynumber: 3.1 Consensus size: 44
10135753 TTATTTTCAG
10135763 TCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGTCTTCGA
1 TCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGTCTTCGA
* * * * ** * ** * *
10135807 TCTGCTTCGCTACCAATA-T-AAGAAGACAAGATCTACTATCTTCAA
1 TCTGCTCCGCT-GCAA-ACTCAGGGAGGTAAG-GCTGGTGTCTTCGA
*
10135852 TCTGCTCCGCTGTAAACTCAGGGAGGTAAGGCTGGTGTCTTCGA
1 TCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGTCTTCGA
10135896 TCT
1 TCT
10135899 ACTTCGCTAC
Statistics
Matches: 64, Mismatches: 23, Indels: 10
0.66 0.24 0.10
Matches are distributed among these distances:
43 1 0.02
44 32 0.50
45 30 0.47
46 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (44 bp):
TCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGTCTTCGA
Found at i:10135857 original size:89 final size:89
Alignment explanation
Indices: 10135646--10135927 Score: 368
Period size: 89 Copynumber: 3.2 Consensus size: 89
10135636 CACTACTGCT
* * * * * * *
10135646 TAGGGAGACAAGATCTACAATTTTTAA-CGTACTCCACTGCAAACTCAGAGAGGCAAGGCTGGTG
1 TAGGAAGACAAGATCTACTATTTTCAATC-TGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTG
* * * *
10135710 TTTTCGAATCTGCTTCACTGCCAGTA
65 TCTTCG-ATCTGCTTCGCTACCAATA
** *
10135736 TAGGAAGACAAGATCTGTTATTTTCAGTCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGT
1 TAGGAAGACAAGATCTACTATTTTCAATCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGT
10135801 CTTCGATCTGCTTCGCTACCAATA
66 CTTCGATCTGCTTCGCTACCAATA
* * *
10135825 TAAGAAGACAAGATCTACTATCTTCAATCTGCTCCGCTGTAAACTCAGGGAGGTAAGGCTGGTGT
1 TAGGAAGACAAGATCTACTATTTTCAATCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGT
*
10135890 CTTCGATCTACTTCGCTACCAATA
66 CTTCGATCTGCTTCGCTACCAATA
*
10135914 CAGGAAGACAAGAT
1 TAGGAAGACAAGAT
10135928 TTGCAACTTT
Statistics
Matches: 168, Mismatches: 23, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
89 110 0.65
90 57 0.34
91 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (89 bp):
TAGGAAGACAAGATCTACTATTTTCAATCTGCTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGT
CTTCGATCTGCTTCGCTACCAATA
Found at i:10136238 original size:42 final size:42
Alignment explanation
Indices: 10136183--10136346 Score: 170
Period size: 42 Copynumber: 3.9 Consensus size: 42
10136173 GATTTGCTAT
* *
10136183 CTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTTA
1 CTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGACTTTA
** * * *
10136225 CTTCAATCCGCTCCACTGCAACTTCAGAGAGATAGGATTATTGG
1 CTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGACT-TT-A
* * *
10136269 CTTTAATCTACTTCACTGCAACTTCAGAGAGATAAG-GTTTA
1 CTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGACTTTA
* * *
10136310 ATAT-GATCTACTCTACTGCAACTTCAGAGAGATAAGA
1 CT-TCAATCTACTCCACTGCAACTTCAGAGAGATAAGA
10136347 TTTGTGATTT
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
41 30 0.29
42 38 0.37
43 3 0.03
44 31 0.30
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (42 bp):
CTTCAATCTACTCCACTGCAACTTCAGAGAGATAAGACTTTA
Found at i:10136288 original size:44 final size:42
Alignment explanation
Indices: 10136193--10136346 Score: 159
Period size: 44 Copynumber: 3.6 Consensus size: 42
10136183 CTTCAGTCTG
*
10136193 CTCCACTGCAACTTCAGAGAGATAAGACTTTACTTCAATCCG
1 CTCCACTGCAACTTCAGAGAGATAAGACTTTACTTCAATCCA
* * * * *
10136235 CTCCACTGCAACTTCAGAGAGATAGGATTATTGGCTTTAATCTA
1 CTCCACTGCAACTTCAGAGAGATAAGACT-TT-ACTTCAATCCA
* * * * *
10136279 CTTCACTGCAACTTCAGAGAGATAAG-GTTTAATAT-GATCTA
1 CTCCACTGCAACTTCAGAGAGATAAGACTTTACT-TCAATCCA
*
10136320 CTCTACTGCAACTTCAGAGAGATAAGA
1 CTCCACTGCAACTTCAGAGAGATAAGA
10136347 TTTGTGATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
41 30 0.32
42 30 0.32
43 3 0.03
44 31 0.33
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (42 bp):
CTCCACTGCAACTTCAGAGAGATAAGACTTTACTTCAATCCA
Found at i:10136528 original size:44 final size:44
Alignment explanation
Indices: 10136456--10136910 Score: 360
Period size: 44 Copynumber: 10.2 Consensus size: 44
10136446 GCTTTCTTCA
* * * *
10136456 ATAAGACTTGTAACTTTAATCCGGTCCACTGTAACTTCAGAGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* *
10136500 ATAGGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* **
10136544 ATAGGATTAT-TGGCTTTAATCTGCTCCACTGCAACTTCAGAGAG
1 ATAAGATT-TGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* * ** * * * *
10136588 ATAAGATTTGCCATCTGCAGTCTGCCCCACTGCAACTTCAGGGGG
1 ATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* * ** *
10136633 ATAAAACTTGCTTTCTTCAATCTGCTCCACTGCAACTTCA-AGGAG
1 ATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAGA-GAG
* * * *
10136678 ATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAGGGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* ** * *
10136722 ATAGGATTAT-TGGCTTTAATCTGCTCCACTGCAACTTTAGAAAG
1 ATAAGATT-TGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* * * * * * * *
10136766 ATAAGATTTGCCATCTTCAGTCTACCCCACTACAACTTCAG-GGG
1 ATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* ** * * * *
10136810 AATAAGACTTGCTTTCTTCAGTCTGCTCCACTGTAACTTCAGGGAG
1 -ATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
* * * *
10136856 ATAAGACTTGTAACTTTAATCCGCTCCATTGCAACCTCAGAGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
10136900 ATAAGATTTGT
1 ATAAGATTTGT
10136911 GGTTTCACCG
Statistics
Matches: 327, Mismatches: 74, Indels: 20
0.78 0.18 0.05
Matches are distributed among these distances:
43 2 0.01
44 187 0.57
45 136 0.42
46 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
Found at i:10136779 original size:178 final size:178
Alignment explanation
Indices: 10136480--10136907 Score: 687
Period size: 178 Copynumber: 2.4 Consensus size: 178
10136470 TTTAATCCGG
* * * *
10136480 TCCACTGTAACTTC-AGAGAGATAGGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
1 TCCACTGTAACTTCAAG-GAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAGGGAG
*
10136544 ATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGCCATCTGCAGT
65 ATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAAAGATAAGATTTGCCATCTGCAGT
* * *
10136609 CTGCCCCACTGCAACTTCAGGGGGATAAAACTTGCTTTCTTCAATCTGC
130 CTACCCCACTACAACTTCAGGGGAATAAAACTTGCTTTCTTCAATCTGC
*
10136658 TCCACTGCAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAGGGAGA
1 TCCACTGTAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAGGGAGA
* *
10136723 TAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTTAGAAAGATAAGATTTGCCATCTTCAGTC
66 TAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAAAGATAAGATTTGCCATCTGCAGTC
* *
10136788 TACCCCACTACAACTTCAGGGGAATAAGACTTGCTTTCTTCAGTCTGC
131 TACCCCACTACAACTTCAGGGGAATAAAACTTGCTTTCTTCAATCTGC
* * *
10136836 TCCACTGTAACTTCAGGGAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACCTCAGAGAGA
1 TCCACTGTAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAGGGAGA
*
10136901 TAAGATT
66 TAGGATT
10136908 TGTGGTTTCA
Statistics
Matches: 231, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
178 229 0.99
179 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (178 bp):
TCCACTGTAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAGGGAGA
TAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGAAAGATAAGATTTGCCATCTGCAGTC
TACCCCACTACAACTTCAGGGGAATAAAACTTGCTTTCTTCAATCTGC
Found at i:10136902 original size:134 final size:133
Alignment explanation
Indices: 10136456--10136909 Score: 439
Period size: 134 Copynumber: 3.4 Consensus size: 133
10136446 GCTTTCTTCA
* * * * *
10136456 ATAAGACTTGTAACTTTAATCCGGTCCACTGTAACTTCAGAGAGATAGGATTTG-TAACTTTAAT
1 ATAAGACTTGTAACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAAT
* * *
10136520 CTGCTCCACTGCAACTTCAGGGAGATAGGA-TTATTGGCTTTAATCTGCTCCACTGCAACTTCAG
66 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTT-ACTTTAATCTGCTCCACTGCAACTTCAG
*
10136584 AGAG
130 GGAG
* * * ** * * * * * * * *
10136588 ATAAGATTTGCCATCTGCAGTCTGCCCCACTGCAACTTCAGGGGGATAAAACTTGCTTTCTTCAA
1 ATAAGACTTG-TAACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAA
* * * *
10136653 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAACTTCAG
65 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTACTTTAATCTGCTCCACTGCAACTTCAG
10136718 GGAG
130 GGAG
* * ** * * * * *
10136722 ATAGGA-TTATTGGCTTTAATCTGCTCCACTGCAACTTTAGAAAGATAAGATTTGCCATCTTCAG
1 ATAAGACTT-GTAACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAA
* * * * * * *
10136786 TCTACCCCACTACAACTTCAGGG-GAATAAGACTTGCTTTCTTCAGTCTGCTCCACTGTAACTTC
65 TCTGCTCCACTGCAACTTCAGGGAG-ATAAGACTTG-TTACTTTAATCTGCTCCACTGCAACTTC
10136850 AGGGAG
128 AGGGAG
* *
10136856 ATAAGACTTGTAACTTTAATCCGCTCCATTGCAACCTCAGAGAGATAAGATTTG
1 ATAAGACTTGTAACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGATTTG
10136910 TGGTTTCACC
Statistics
Matches: 251, Mismatches: 64, Indels: 12
0.77 0.20 0.04
Matches are distributed among these distances:
132 10 0.04
133 99 0.39
134 137 0.55
135 5 0.02
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (133 bp):
ATAAGACTTGTAACTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGATTTGCTATCTTCAAT
CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTACTTTAATCTGCTCCACTGCAACTTCAGG
GAG
Found at i:10137223 original size:24 final size:24
Alignment explanation
Indices: 10137187--10137242 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
10137177 CAAATTTCCC
* *
10137187 CCACTGTAGTCTTCATGGTTCAAA
1 CCACTGTAATCTTCAAGGTTCAAA
*
10137211 CCACTGTAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAA
10137235 CCACTGTA
1 CCACTGTA
10137243 CTTTTGGGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (24 bp):
CCACTGTAATCTTCAAGGTTCAAA
Found at i:10143898 original size:23 final size:22
Alignment explanation
Indices: 10143868--10143912 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
10143858 AAATTAAATC
10143868 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
10143891 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAAATCATATCT
10143913 AAAATTGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:10148387 original size:22 final size:20
Alignment explanation
Indices: 10148340--10148415 Score: 64
Period size: 20 Copynumber: 3.7 Consensus size: 20
10148330 TTTTATGTAC
* * *
10148340 TATACTATTTTAATATATTGA
1 TATACTATTATAAAAT-TTAA
*
10148361 T-TACTGTTATAAAATTTGTAA
1 TATACTATTATAAAA-TT-TAA
* *
10148382 TATACTATTTTAACATTTAA
1 TATACTATTATAAAATTTAA
10148402 TATACTATTATAAA
1 TATACTATTATAAA
10148416 TATACTTTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
20 26 0.60
21 7 0.16
22 10 0.23
ACGTcount: A:0.41, C:0.07, G:0.04, T:0.49
Consensus pattern (20 bp):
TATACTATTATAAAATTTAA
Found at i:10148413 original size:42 final size:42
Alignment explanation
Indices: 10148335--10148415 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
10148325 TAATTTTTTA
* * * *
10148335 TGTACTATACTATTTTAATATATTGATTACTGTTATAAAATT
1 TGTAATATACTATTTTAACATATTAATTACTATTATAAAATT
10148377 TGTAATATACTATTTTAACAT-TTAATATACTATTATAAA
1 TGTAATATACTATTTTAACATATTAAT-TACTATTATAAA
10148416 TATACTTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 4 0.12
42 30 0.88
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.48
Consensus pattern (42 bp):
TGTAATATACTATTTTAACATATTAATTACTATTATAAAATT
Found at i:10148443 original size:40 final size:40
Alignment explanation
Indices: 10148397--10148682 Score: 287
Period size: 40 Copynumber: 7.1 Consensus size: 40
10148387 TATTTTAACA
*
10148397 TTTAATATACTATTATAAATATACTTTTTTAATATATTGT
1 TTTAATATACTGTTATAAATATACTTTTTTAATATATTGT
* * * *
10148437 TTTAATATATTGTTATAAATATACTGTTTTAATATACTAT
1 TTTAATATACTGTTATAAATATACTTTTTTAATATATTGT
* * *
10148477 TATAAATATACT-TTTTTAATATA-TTGTTTTAATATATTGT
1 T-TTAATATACTGTTATAAATATACTT-TTTTAATATATTGT
* * * *
10148517 TATAAATATACTGTT-TTAATATACTATTATAAATATACTT-T
1 T-TTAATATACTGTTATAAATATACT-TTTTTAATATA-TTGT
* * * *
10148558 TTTAATATATTGTT-TTAATATA-TTGTTATAAATATACTGT
1 TTTAATATACTGTTATAAATATACTT-TT-TTAATATATTGT
*
10148598 TTTAATATACTATTATAAATATACTTTTTTAATATATTGT
1 TTTAATATACTGTTATAAATATACTTTTTTAATATATTGT
* * *
10148638 TTTAATATATTGTTATAAATATACTATTTTAATATAATGT
1 TTTAATATACTGTTATAAATATACTTTTTTAATATATTGT
10148678 TTTAA
1 TTTAA
10148683 CTTTTAATGT
Statistics
Matches: 208, Mismatches: 27, Indels: 22
0.81 0.11 0.09
Matches are distributed among these distances:
38 1 0.00
39 4 0.02
40 168 0.81
41 30 0.14
42 5 0.02
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (40 bp):
TTTAATATACTGTTATAAATATACTTTTTTAATATATTGT
Found at i:10148468 original size:67 final size:67
Alignment explanation
Indices: 10148397--10148673 Score: 545
Period size: 67 Copynumber: 4.1 Consensus size: 67
10148387 TATTTTAACA
10148397 TTTAATATACTATTATAAATATACTTTTTTAATATATTGTTTTAATATATTGTTATAAATATACT
1 TTTAATATACTATTATAAATATACTTTTTTAATATATTGTTTTAATATATTGTTATAAATATACT
10148462 GT
66 GT
10148464 TTTAATATACTATTATAAATATACTTTTTTAATATATTGTTTTAATATATTGTTATAAATATACT
1 TTTAATATACTATTATAAATATACTTTTTTAATATATTGTTTTAATATATTGTTATAAATATACT
10148529 GT
66 GT
10148531 TTTAATATACTATTATAAATATACTTTTTTAATATATTGTTTTAATATATTGTTATAAATATACT
1 TTTAATATACTATTATAAATATACTTTTTTAATATATTGTTTTAATATATTGTTATAAATATACT
10148596 GT
66 GT
10148598 TTTAATATACTATTATAAATATACTTTTTTAATATATTGTTTTAATATATTGTTATAAATATACT
1 TTTAATATACTATTATAAATATACTTTTTTAATATATTGTTTTAATATATTGTTATAAATATACT
*
10148663 AT
66 GT
10148665 TTTAATATA
1 TTTAATATA
10148674 ATGTTTTAAC
Statistics
Matches: 209, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 209 1.00
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (67 bp):
TTTAATATACTATTATAAATATACTTTTTTAATATATTGTTTTAATATATTGTTATAAATATACT
GT
Found at i:10151372 original size:30 final size:30
Alignment explanation
Indices: 10151336--10151394 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
10151326 AAATATAGTT
* *
10151336 TGAAGCAAAATTAGATATTGGGATTTTCAC
1 TGAAGCAAAATTACAGATTGGGATTTTCAC
10151366 TGAAGCAAAATTACAGATTGGGATTTTCA
1 TGAAGCAAAATTACAGATTGGGATTTTCA
10151395 ATGCTTGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (30 bp):
TGAAGCAAAATTACAGATTGGGATTTTCAC
Found at i:10160722 original size:50 final size:50
Alignment explanation
Indices: 10160643--10160743 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
10160633 TAAGTCCAAA
* *
10160643 AAGAAAAGGAAGAAATGGTAAAGTTAAGGCATTGACAATTATGATGTTTT
1 AAGAAAAGGAAGAAATGGTAAAGTCAAGGCATTGACAACTATGATGTTTT
*
10160693 AAGAAACGGAAGAAATGGTAAAGTCAAGGCATTGACAACTATGATGTTTT
1 AAGAAAAGGAAGAAATGGTAAAGTCAAGGCATTGACAACTATGATGTTTT
10160743 A
1 A
10160744 GGATTGAAGT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.44, C:0.07, G:0.24, T:0.26
Consensus pattern (50 bp):
AAGAAAAGGAAGAAATGGTAAAGTCAAGGCATTGACAACTATGATGTTTT
Found at i:10160828 original size:50 final size:50
Alignment explanation
Indices: 10160769--10160865 Score: 167
Period size: 50 Copynumber: 1.9 Consensus size: 50
10160759 TCCAAAAAGA
10160769 AAAGGAAGAAATCGTAAAGTTAAGGCATTGACAACTATGATGTTTTAAGT
1 AAAGGAAGAAATCGTAAAGTTAAGGCATTGACAACTATGATGTTTTAAGT
* * *
10160819 AAAGGAAGAACTGGTAAAGTTAAGGCATTGATAACTATGATGTTTTA
1 AAAGGAAGAAATCGTAAAGTTAAGGCATTGACAACTATGATGTTTTA
10160866 GGATTGAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (50 bp):
AAAGGAAGAAATCGTAAAGTTAAGGCATTGACAACTATGATGTTTTAAGT
Done.