Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 29 of 153
Found at i:10160845 original size:122 final size:122
Alignment explanation
Indices: 10160628--10160873 Score: 431
Period size: 122 Copynumber: 2.0 Consensus size: 122
10160618 TGAAATGGTA
* *
10160628 AAGTTTAAGTCCAAAAAGAAAAGGAAGAAATGGTAAAGTTAAGGCATTGACAATTATGATGTTTT
1 AAGTTTAAGTCCAAAAAGAAAAGGAAGAAATCGTAAAGTTAAGGCATTGACAACTATGATGTTTT
10160693 AAGAAACGGAAGAAATGGTAAAGTCAAGGCATTGACAACTATGATGTTTTAGGATTG
66 AAGAAACGGAAGAAATGGTAAAGTCAAGGCATTGACAACTATGATGTTTTAGGATTG
10160750 AAGTTTAAGTCCAAAAAGAAAAGGAAGAAATCGTAAAGTTAAGGCATTGACAACTATGATGTTTT
1 AAGTTTAAGTCCAAAAAGAAAAGGAAGAAATCGTAAAGTTAAGGCATTGACAACTATGATGTTTT
* * *
10160815 AAGTAAA-GGAAGAACTGGTAAAGTTAAGGCATTGATAACTATGATGTTTTAGGATTG
66 AAG-AAACGGAAGAAATGGTAAAGTCAAGGCATTGACAACTATGATGTTTTAGGATTG
10160872 AA
1 AA
10160874 TTCCATCAAG
Statistics
Matches: 118, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
122 115 0.97
123 3 0.03
ACGTcount: A:0.43, C:0.07, G:0.23, T:0.27
Consensus pattern (122 bp):
AAGTTTAAGTCCAAAAAGAAAAGGAAGAAATCGTAAAGTTAAGGCATTGACAACTATGATGTTTT
AAGAAACGGAAGAAATGGTAAAGTCAAGGCATTGACAACTATGATGTTTTAGGATTG
Found at i:10171346 original size:15 final size:15
Alignment explanation
Indices: 10171326--10171358 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
10171316 AAAGGAAATG
10171326 AAATGGTAAGTATGC
1 AAATGGTAAGTATGC
10171341 AAATGGTAAGTATGC
1 AAATGGTAAGTATGC
10171356 AAA
1 AAA
10171359 ATCTTATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.06, G:0.24, T:0.24
Consensus pattern (15 bp):
AAATGGTAAGTATGC
Found at i:10172767 original size:20 final size:20
Alignment explanation
Indices: 10172742--10172782 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
10172732 AGGGAGGGGA
10172742 TTGAGAATTTTGCTTCTCCT
1 TTGAGAATTTTGCTTCTCCT
10172762 TTGAGAATTTTGCTTCTCCT
1 TTGAGAATTTTGCTTCTCCT
10172782 T
1 T
10172783 GTACTAGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.20, G:0.15, T:0.51
Consensus pattern (20 bp):
TTGAGAATTTTGCTTCTCCT
Found at i:10179027 original size:20 final size:20
Alignment explanation
Indices: 10179002--10179121 Score: 80
Period size: 20 Copynumber: 6.0 Consensus size: 20
10178992 CGTGCCTCTA
10179002 TTTGTACTTTGGTACCCCTG
1 TTTGTACTTTGGTACCCCTG
* * *
10179022 TTTGTACTTCGATACCCCTA
1 TTTGTACTTTGGTACCCCTG
** * * *
10179042 AATGCACATAT-GTGCCCCTG
1 TTTGTAC-TTTGGTACCCCTG
10179062 TTTGTACTTTGGTACCCCTG
1 TTTGTACTTTGGTACCCCTG
** * * ** *
10179082 AATGCACATAAGTGCCCCTG
1 TTTGTACTTTGGTACCCCTG
*
10179102 GTTGTACTTTGGTACCCCTG
1 TTTGTACTTTGGTACCCCTG
10179122 AACGGACATC
Statistics
Matches: 68, Mismatches: 30, Indels: 4
0.67 0.29 0.04
Matches are distributed among these distances:
19 2 0.03
20 65 0.96
21 1 0.01
ACGTcount: A:0.17, C:0.28, G:0.19, T:0.36
Consensus pattern (20 bp):
TTTGTACTTTGGTACCCCTG
Found at i:10179100 original size:60 final size:59
Alignment explanation
Indices: 10178973--10179100 Score: 139
Period size: 60 Copynumber: 2.1 Consensus size: 59
10178963 ACGCACATTT
* * * ** * **
10178973 GTGCCCCTGAATGCACGTACGTGCCTCTATTTGTACTTTGGTACCCCTGTTTGTACTTC
1 GTGCCCCTAAATGCACATACGTGCCCCTATTTGTACTTTGGTACCCCTGAATGCACTAA
* * *
10179032 GATACCCCTAAATGCACATATGTGCCCCTGTTTGTACTTTGGTACCCCTGAATGCACATAA
1 G-TGCCCCTAAATGCACATACGTGCCCCTATTTGTACTTTGGTACCCCTGAATGCAC-TAA
10179093 GTGCCCCT
1 GTGCCCCT
10179101 GGTTGTACTT
Statistics
Matches: 55, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
59 1 0.02
60 52 0.95
61 2 0.04
ACGTcount: A:0.19, C:0.30, G:0.19, T:0.33
Consensus pattern (59 bp):
GTGCCCCTAAATGCACATACGTGCCCCTATTTGTACTTTGGTACCCCTGAATGCACTAA
Found at i:10179121 original size:40 final size:40
Alignment explanation
Indices: 10179016--10179123 Score: 171
Period size: 40 Copynumber: 2.7 Consensus size: 40
10179006 TACTTTGGTA
* * * *
10179016 CCCCTGTTTGTACTTCGATACCCCTAAATGCACATATGTG
1 CCCCTGTTTGTACTTTGGTACCCCTGAATGCACATAAGTG
10179056 CCCCTGTTTGTACTTTGGTACCCCTGAATGCACATAAGTG
1 CCCCTGTTTGTACTTTGGTACCCCTGAATGCACATAAGTG
*
10179096 CCCCTGGTTGTACTTTGGTACCCCTGAA
1 CCCCTGTTTGTACTTTGGTACCCCTGAA
10179124 CGGACATCCG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.19, C:0.30, G:0.19, T:0.32
Consensus pattern (40 bp):
CCCCTGTTTGTACTTTGGTACCCCTGAATGCACATAAGTG
Found at i:10182748 original size:50 final size:50
Alignment explanation
Indices: 10182672--10182825 Score: 157
Period size: 50 Copynumber: 3.0 Consensus size: 50
10182662 ACATGAGAGT
* * *
10182672 TCTCATATCGTTGCCCATGCCATGTCCCAAACATGGTCTTACA-GGAGACC
1 TCTCATATCGGTGCCAACGCCATGTCCCAAACATGGTCTTACATGG-GACC
* *
10182722 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATATCGGTGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACC
** * *
10182772 TCTCATAACCTCAATAATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TCTCAT-A--TC---GGTGCCAACGCCATGTCCCAAACATGGTCTTACATGGGA
10182826 TCTCATTCCT
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
50 48 0.55
51 2 0.02
53 2 0.02
56 36 0.41
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (50 bp):
TCTCATATCGGTGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACC
Found at i:10186458 original size:127 final size:127
Alignment explanation
Indices: 10186282--10186512 Score: 311
Period size: 127 Copynumber: 1.8 Consensus size: 127
10186272 TTATTTCAAT
*
10186282 TTTAAAAGGATATTTGGTTACTTAGAATCAACGAAGAAAATCGAAACCCAGTAAGTTAGGGCACG
1 TTTAAAAGGATATTTGGTTACTTAGAATCAACGAAGAAAATCGAAACCCAGTAAGTTAGGGCACA
* * * *
10186347 ATTTATCGAATTTTCTAAATATAGAATATTGCCTTTATTTTTTGAAATTTTATGTGTTTGAAA
66 ATTTATCGAATTTCCAAAATACAAAATATTGCC-TTATTTTTTGAAATTTTATGTGTTTGAAA
* * * ** * * *
10186410 TTTAAAAGGATATTTTGTTATTTGGGTTTAACG-AGAAAATCGAGACCCAGTAAGTTAGGGTACA
1 TTTAAAAGGATATTTGGTTACTTAGAATCAACGAAGAAAATCGAAACCCAGTAAGTTAGGGCACA
* *
10186474 ATTTCTCGAATTTCCAAAATGCAAAATATTGCCTTATTT
66 ATTTATCGAATTTCCAAAATACAAAATATTGCCTTATTT
10186513 AGCAAAATTC
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
126 6 0.07
127 55 0.62
128 27 0.31
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (127 bp):
TTTAAAAGGATATTTGGTTACTTAGAATCAACGAAGAAAATCGAAACCCAGTAAGTTAGGGCACA
ATTTATCGAATTTCCAAAATACAAAATATTGCCTTATTTTTTGAAATTTTATGTGTTTGAAA
Found at i:10188298 original size:82 final size:83
Alignment explanation
Indices: 10188196--10188815 Score: 635
Period size: 82 Copynumber: 7.4 Consensus size: 83
10188186 TGGTTTTTTT
10188196 TGTCTGCTCCACTGA-TGCTTAGGGAGATAAGA-CTGGATGTGATCTGCTCCACTACTGCTTAGG
1 TGTCTGCTCCACT-ACTGCTTAGGGAGATAAGATCTGGATGTGATCTGCTCCACTACTGCTTAGG
10188259 GAGATAAGATCTGTGGTTC
65 GAGATAAGATCTGTGGTTC
* * *
10188278 TGTCTGCTCCACTATTGCTTAGGGAGATAAGA-CTTGATGCGATCTGCTCCACTACTGCTTAGGG
1 TGTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGATGTGATCTGCTCCACTACTGCTTAGGG
* *
10188342 AAATAATATCTGTGGTTC
66 AGATAAGATCTGTGGTTC
* *
10188360 TTTCGTCTGTTCCACTACTGCTTAGGGAGATAAGA-CTTGATGTGATCTGCTCCACTACTGCTTA
1 --T-GTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGATGTGATCTGCTCCACTACTGCTTA
*
10188424 GGGAGATAAGATCTGTGGTTT
63 GGGAGATAAGATCTGTGGTTC
** * * *
10188445 TGTCCACTCCGCTACTGCTTAGGGAGATAAGA-CTTGATGCGATCTGCTCCACTACTGCTTAGGG
1 TGTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGATGTGATCTGCTCCACTACTGCTTAGGG
* *
10188509 AAATAATATCTGTGGTTC
66 AGATAAGATCTGTGGTTC
* * * *
10188527 TTTCGTCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTG-TCTGCTCCACTATTGCT
1 --T-GTCTGCTCCACTACTGCTTAGGGAGATAAGATC--TGGATGTGATCTGCTCCACTACTGCT
* *
10188591 TAGGGAGATAAGA-CT-T-GATG
61 TAGGGAGATAAGATCTGTGGTTC
* * * * *
10188611 GGATCTGCTCCACTACTGCTCAGGGAGATAAGATCTGTAGTTCTG-TCTGCTCCACTATTGCTTA
1 TG-TCTGCTCCACTACTGCTTAGGGAGATAAGATCTG--GATGTGATCTGCTCCACTACTGCTTA
* *
10188675 GGGAGATAAGA-CT-TGATGC
63 GGGAGATAAGATCTGTGGTTC
* * *
10188694 -GATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTGGTTCTTTCG-TCTGCTCCACTACTGC
1 TG-TCTGCTCCACTACTGCTTAGGGAGATAAGATC--TGG--ATGT-GATCTGCTCCACTACTGC
* * *
10188757 TTAGGGAGATAATA-CT-T-GATG
60 TTAGGGAGATAAGATCTGTGGTTC
*
10188778 TGATCTGCTCCACTACTGCCTAGGGAGATAAGATCTGG
1 TG-TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGG
10188816 TTTCTTTGTA
Statistics
Matches: 468, Mismatches: 50, Indels: 39
0.84 0.09 0.07
Matches are distributed among these distances:
80 2 0.00
81 2 0.00
82 251 0.54
83 4 0.01
84 8 0.02
85 167 0.36
86 3 0.01
87 27 0.06
88 4 0.01
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (83 bp):
TGTCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGATGTGATCTGCTCCACTACTGCTTAGGG
AGATAAGATCTGTGGTTC
Found at i:10188814 original size:167 final size:168
Alignment explanation
Indices: 10188192--10188810 Score: 681
Period size: 167 Copynumber: 3.7 Consensus size: 168
10188182 AGATTGGTTT
* * * *
10188192 TTTTTGTCTGCTCCACTGA-TGCTTAGGGAGATAAGA-C--TGGAT-GTGATCTGCTCCACTACT
1 TTTTCGTCTGTTCCACT-ACTGCTTAGGGAGATAAGATCTGTGGTTCTTG-TCTGCTCCACTACT
* * * *
10188252 GCTTAGGGAGATAAGATCTGTGGTTCTGTCTGCTCCACTATTGCTTAGGGAGATAAGACTTGATG
64 GCTTAGGGAGATAAGATCTGTGGATGTGTCTGCTCCACTACTGCCTAGGGAGATAAGACTTGATG
10188317 CGATCTGCTCCACTACTGCTTAGGGAAATAATATCTGTGG
129 CGATCTGCTCCACTACTGCTTAGGGAAATAATATCTGTGG
* *
10188357 TTCTTTCGTCTGTTCCACTACTGCTTAGGGAGATAAGA-CT-T-GAT-GTGATCTGCTCCACTAC
1 -T-TTTCGTCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTTG-TCTGCTCCACTAC
* * ** * *
10188418 TGCTTAGGGAGATAAGATCTGTGGTTTTGTCCACTCCGCTACTGCTTAGGGAGATAAGACTTGAT
63 TGCTTAGGGAGATAAGATCTGTGGATGTGTCTGCTCCACTACTGCCTAGGGAGATAAGACTTGAT
10188483 GCGATCTGCTCCACTACTGCTTAGGGAAATAATATCTGTGG
128 GCGATCTGCTCCACTACTGCTTAGGGAAATAATATCTGTGG
*
10188524 TTCTTTCGTCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTC-TGTCTGCTCCACTATT
1 -T-TTTCGTCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTTGTCTGCTCCACTACT
*
10188588 GCTTAGGGAGATAAGA-CT-T-GATGGGATCTGCTCCACTACTG-CTCAGGGAGATAAGA-TCTG
64 GCTTAGGGAGATAAGATCTGTGGATGTG-TCTGCTCCACTACTGCCT-AGGGAGATAAGACT-TG
* * * *
10188648 TAGTTCTG-TCTGCTCCACTATTGCTTAGGGAGATAAGA-CT-T-G
126 -A-TGC-GATCTGCTCCACTACTGCTTAGGGAAATAATATCTGTGG
* * * *
10188690 -ATGCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTGGTTCTTTCGTCTGCTCCACTAC
1 TTTTCG-TCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTC-TT-GTCTGCTCCACTAC
*
10188754 TGCTTAGGGAGATAATA-CT-T-GATGTGATCTGCTCCACTACTGCCTAGGGAGATAAGA
63 TGCTTAGGGAGATAAGATCTGTGGATGTG-TCTGCTCCACTACTGCCTAGGGAGATAAGA
10188811 TCTGGTTTCT
Statistics
Matches: 408, Mismatches: 27, Indels: 35
0.87 0.06 0.07
Matches are distributed among these distances:
163 3 0.01
164 38 0.09
166 9 0.02
167 284 0.70
168 10 0.02
169 59 0.14
170 5 0.01
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (168 bp):
TTTTCGTCTGTTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTCTTGTCTGCTCCACTACTGC
TTAGGGAGATAAGATCTGTGGATGTGTCTGCTCCACTACTGCCTAGGGAGATAAGACTTGATGCG
ATCTGCTCCACTACTGCTTAGGGAAATAATATCTGTGG
Found at i:10189073 original size:87 final size:87
Alignment explanation
Indices: 10188954--10189603 Score: 865
Period size: 87 Copynumber: 7.4 Consensus size: 87
10188944 TGGCTTCTTT
* * * * *
10188954 GATCTGCTTCACCGTTAGTACAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTGCAACCG
1 GATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTACAACCG
10189019 ATGGAGGCAAGGTTTTGTTTTC
66 ATGGAGGCAAGGTTTTGTTTTC
* * * * *
10189041 GATCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCACCACAACCG
1 GATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTACAACCG
*
10189106 A-GAGAGGCAAGGTTTGTGTCTTC
66 ATG-GAGGCAAGGTTT-TGTTTTC
* * * * *
10189129 GATCTGCTTCGTTGTTAATGCAGGAAGACAAGATCTGTTGTCTTCAACCAGCTCCACCACAACCG
1 GATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTACAACCG
*
10189194 A-GAGAGGCAAGGTTTGTGTCTTC
66 ATG-GAGGCAAGGTTT-TGTTTTC
* * * ** *
10189217 GATCTACTTCGTTGTTAATGCAGGAAGGCAAGATCTGCTGTCTTCAACCAGCTCTGCTAC-ACCC
1 GATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTACAACCG
* *
10189281 AAGAGAGGCAAGGTTTGTGTCTTC
66 ATG-GAGGCAAGGTTT-TGTTTTC
* *
10189305 GATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTACAACCG
1 GATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTACAACCG
* *
10189370 GTGGAGGCAAGGCTTTGTTTTC
66 ATGGAGGCAAGGTTTTGTTTTC
* * *
10189392 GATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTACAACCG
1 GATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTACAACCG
* *
10189457 GTGGAGGCAAGGCTTTGTTTTC
66 ATGGAGGCAAGGTTTTGTTTTC
* * *
10189479 GATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTACAACCG
1 GATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTACAACCG
*
10189544 ATGGAGGCAAGGCTTTGTTTTC
66 ATGGAGGCAAGGTTTTGTTTTC
* *
10189566 GATCTGCTTTGCTGTTAATGTAGGAAGGCAAGATCTGC
1 GATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGC
10189604 AACTTCATTG
Statistics
Matches: 522, Mismatches: 37, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
86 1 0.00
87 287 0.55
88 230 0.44
89 4 0.01
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (87 bp):
GATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTACAACCG
ATGGAGGCAAGGTTTTGTTTTC
Found at i:10189079 original size:176 final size:176
Alignment explanation
Indices: 10188949--10189603 Score: 890
Period size: 176 Copynumber: 3.7 Consensus size: 176
10188939 AAGACTGGCT
* * * * * *
10188949 TCTTTGATCTGCTTCACCGTTAGTACAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTGC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTAC
* * * *
10189014 AACCGATGGAGGCAAGGTTTTGTTTTCGATCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTGT
66 AACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGC
* * *
10189079 TGTCTTCAACCAGCTCCACCACAACC-GAGAGAGGCAAGGTTTGTG
131 TATCTTCAACCAGCTCCACTACAACCAGAGAGAGGCAAGGCTTGTG
* * * * *
10189124 TCTTCGATCTGCTTCGTTGTTAATGCAGGAAGACAAGATCTGTTGTCTTCAACCAGCTCCACCAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTAC
* *
10189189 AACCGA-GAGAGGCAAGG-TTTGTGTCTTCGATCTACTTCGTTGTTAATGCAGGAAGGCAAGATC
66 AACCGATG-GAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATC
* ** * *
10189252 TGCTGTCTTCAACCAGCTCTGCTACACCCA-AGAGAGGCAAGGTTTGTG
128 TGCTATCTTCAACCAGCTCCACTACAACCAGAGAGAGGCAAGGCTTGTG
* *
10189300 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTAC
* *
10189365 AACCGGTGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGC
66 AACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGC
* * * *
10189430 TATCTTTAACTAGCTCCACTACAACCGGTG-GAGGCAAGGCTT-TG
131 TATCTTCAACCAGCTCCACTACAACCAGAGAGAGGCAAGGCTTGTG
* * * *
10189474 TTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACTAGCTCCACTAC
1 TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTAC
* *
10189539 AACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTTGCTGTTAATGTAGGAAGGCAAGATCTGC
66 AACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGC
10189604 AACTTCATTG
Statistics
Matches: 427, Mismatches: 46, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
174 132 0.31
175 139 0.33
176 150 0.35
177 6 0.01
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (176 bp):
TCTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTAC
AACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATGCAGGAAGGCAAGATCTGC
TATCTTCAACCAGCTCCACTACAACCAGAGAGAGGCAAGGCTTGTG
Found at i:10189128 original size:43 final size:43
Alignment explanation
Indices: 10189079--10189216 Score: 109
Period size: 44 Copynumber: 3.2 Consensus size: 43
10189069 CAAGATCTGT
10189079 TGTCTTCAACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTG
1 TGTCTTCAACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTG
* * * ****** * * * *
10189122 TGTCTTCGATCTGCTTCGTTGTTAA-TGCAG-GAAGACAAGATCTG
1 TGTCTTCAACCAGC-TCCACCACAACCG-AGAG-AGGCAAGGTTTG
10189166 TTGTCTTCAACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTG
1 -TGTCTTCAACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTG
10189210 TGTCTTC
1 TGTCTTC
10189217 GATCTACTTC
Statistics
Matches: 63, Mismatches: 26, Indels: 12
0.62 0.26 0.12
Matches are distributed among these distances:
43 20 0.32
44 30 0.48
45 13 0.21
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (43 bp):
TGTCTTCAACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTG
Found at i:10189334 original size:44 final size:44
Alignment explanation
Indices: 10189110--10189336 Score: 142
Period size: 44 Copynumber: 5.2 Consensus size: 44
10189100 CAACCGAGAG
*
10189110 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGTTGTTAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTTAATGCAGGA
* * * * * * * * *** *
10189154 AGACAAGATCTGTTGTCTTCAACCAGCTCCAC-CACAA--CCGAGA
1 AGGCAAGGTTTG-TGTCTTCGATCTGCTTCGCTGTTAATGCAG-GA
* *
10189197 GAGGCAAGGTTTGTGTCTTCGATCTACTTCGTTGTTAATGCAGGA
1 -AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTTAATGCAGGA
* * * * * * ** *
10189242 AGGCAAGATCTGCTGTCTTCAACCAGC-T--CTGCTACACCCAAGA
1 AGGCAAGGTTTG-TGTCTTCGATCTGCTTCGCTGTTA-ATGCAGGA
10189285 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTTAATGCAGGA
1 -AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTTAATGCAGGA
10189330 AGGCAAG
1 AGGCAAG
10189337 ATCTGCTATC
Statistics
Matches: 124, Mismatches: 47, Indels: 24
0.64 0.24 0.12
Matches are distributed among these distances:
42 6 0.05
43 30 0.24
44 51 0.41
45 30 0.24
46 7 0.06
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (44 bp):
AGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTTAATGCAGGA
Found at i:10189378 original size:44 final size:44
Alignment explanation
Indices: 10189330--10189554 Score: 119
Period size: 44 Copynumber: 5.2 Consensus size: 44
10189320 TAATGCAGGA
10189330 AGGCAAGATCTGCTATCTTTAACTAGCTCCACTACAACCGGTGG
1 AGGCAAGATCTGCTATCTTTAACTAGCTCCACTACAACCGGTGG
* * * * * * ** * *
10189374 AGGCAAGGCTTTG-T-T-TTCGATCT-GCTTCGCTGTTAACGCAG-GA
1 AGGCAA-GATCTGCTATCTT-TAACTAGCTCCACT-ACAAC-CGGTGG
10189417 AGGCAAGATCTGCTATCTTTAACTAGCTCCACTACAACCGGTGG
1 AGGCAAGATCTGCTATCTTTAACTAGCTCCACTACAACCGGTGG
* * * * * * ** * *
10189461 AGGCAAGGCTTTG-T-T-TTCGATCT-GCTTCGCTGTTAACGCAG-GA
1 AGGCAA-GATCTGCTATCTT-TAACTAGCTCCACT-ACAAC-CGGTGG
*
10189504 AGGCAAGATCTGCTATCTTTAACTAGCTCCACTACAACCGATGG
1 AGGCAAGATCTGCTATCTTTAACTAGCTCCACTACAACCGGTGG
10189548 AGGCAAG
1 AGGCAAG
10189555 GCTTTGTTTT
Statistics
Matches: 122, Mismatches: 41, Indels: 36
0.61 0.21 0.18
Matches are distributed among these distances:
42 24 0.20
43 33 0.27
44 41 0.34
45 24 0.20
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (44 bp):
AGGCAAGATCTGCTATCTTTAACTAGCTCCACTACAACCGGTGG
Found at i:10189423 original size:43 final size:43
Alignment explanation
Indices: 10189374--10189510 Score: 111
Period size: 43 Copynumber: 3.2 Consensus size: 43
10189364 CAACCGGTGG
10189374 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
* * * * * * ** * *
10189417 AGGCAA-GATCTGCTATCTT-TAACTAGCTCCACT-ACAAC-CGGTGG
1 AGGCAAGGCTTTG-T-T-TTCGATCT-GCTTCGCTGTTAACGCAG-GA
10189461 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
1 AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
10189504 AGGCAAG
1 AGGCAAG
10189511 ATCTGCTATC
Statistics
Matches: 65, Mismatches: 20, Indels: 18
0.63 0.19 0.17
Matches are distributed among these distances:
42 12 0.18
43 24 0.37
44 17 0.26
45 12 0.18
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (43 bp):
AGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGA
Found at i:10190611 original size:17 final size:18
Alignment explanation
Indices: 10190578--10190610 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
10190568 CTCTCCCTTT
10190578 TTTTTGTTCTCGTTTTTC
1 TTTTTGTTCTCGTTTTTC
10190596 TTTTT-TTCTC-TTTTT
1 TTTTTGTTCTCGTTTTT
10190611 TTTCCAAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 5 0.33
18 5 0.33
ACGTcount: A:0.00, C:0.15, G:0.06, T:0.79
Consensus pattern (18 bp):
TTTTTGTTCTCGTTTTTC
Found at i:10192406 original size:21 final size:21
Alignment explanation
Indices: 10192382--10192445 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
10192372 AAAAGATGCT
*
10192382 TGCAATGAAATGTAATGCAGA
1 TGCAATGAAATGTAAAGCAGA
*
10192403 TGC-AT-AAATGCAAAAAG-AGCA
1 TGCAATGAAATG--TAAAGCAG-A
10192424 TGCAATGAAATGTAAAGCAGA
1 TGCAATGAAATGTAAAGCAGA
10192445 T
1 T
10192446 ATATGAATGC
Statistics
Matches: 34, Mismatches: 3, Indels: 12
0.69 0.06 0.24
Matches are distributed among these distances:
19 5 0.15
20 4 0.12
21 16 0.47
22 4 0.12
23 5 0.15
ACGTcount: A:0.47, C:0.11, G:0.22, T:0.20
Consensus pattern (21 bp):
TGCAATGAAATGTAAAGCAGA
Found at i:10192432 original size:42 final size:42
Alignment explanation
Indices: 10192372--10192463 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
10192362 TTAATGAATG
* * *
10192372 AAAAGATGCTTGCAATGAAATGTAATGCAGATGCATAAATGCA
1 AAAAGA-GCATGCAATGAAATGTAAAGCAGATACATAAATGCA
* *
10192415 AAAAGAGCATGCAATGAAATGTAAAGCAGATATATGAATGCA
1 AAAAGAGCATGCAATGAAATGTAAAGCAGATACATAAATGCA
10192457 AAAAGAG
1 AAAAGAG
10192464 ACATTGATTC
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 38 0.86
43 6 0.14
ACGTcount: A:0.49, C:0.10, G:0.22, T:0.20
Consensus pattern (42 bp):
AAAAGAGCATGCAATGAAATGTAAAGCAGATACATAAATGCA
Found at i:10194157 original size:127 final size:127
Alignment explanation
Indices: 10193988--10194218 Score: 302
Period size: 127 Copynumber: 1.8 Consensus size: 127
10193978 TTATTTCAAT
*
10193988 TTTAAAAGGATATTTGGTTACTTAGAATCAACGAAGAAAATCGAAACCCAGTAAGCTAGGGCACG
1 TTTAAAAGGATATTTGGTTACTTAGAATCAACGAAGAAAATCGAAACCCAGTAAGCTAGGGCACA
* * * *
10194053 ATTTATCGAATTTTCTAAATATAGAATATTGCCTTTATTTTTTGAAATTTTATGTGTTTAAAA
66 ATTTATCGAATTTCCAAAATACAAAATATTGCC-TTATTTTTTGAAATTTTATGTGTTTAAAA
* * * ** * * * *
10194116 TTTAAAAGGATATTTTGTTATTTGGGTTTAACG-AGAAAATCGAGACCCAGTAAGTTAGGGTACA
1 TTTAAAAGGATATTTGGTTACTTAGAATCAACGAAGAAAATCGAAACCCAGTAAGCTAGGGCACA
* *
10194180 ATTTCTCGAATTTCCAAAATGCAAAATATTGCCTTATTT
66 ATTTATCGAATTTCCAAAATACAAAATATTGCCTTATTT
10194219 AGCAAAATTC
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
126 6 0.07
127 54 0.62
128 27 0.31
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.36
Consensus pattern (127 bp):
TTTAAAAGGATATTTGGTTACTTAGAATCAACGAAGAAAATCGAAACCCAGTAAGCTAGGGCACA
ATTTATCGAATTTCCAAAATACAAAATATTGCCTTATTTTTTGAAATTTTATGTGTTTAAAA
Found at i:10215805 original size:39 final size:41
Alignment explanation
Indices: 10215740--10215818 Score: 117
Period size: 39 Copynumber: 2.0 Consensus size: 41
10215730 GACATTATAA
*
10215740 TGCATTCATGGAGTACCGAAGTACAAACAGGGGCATGTATG
1 TGCATTCATGGAGTACCGAAGTACAAACAGGGGCACGTATG
* *
10215781 TGCATTCA-GGGGTACC-CAGTACAAACAGGGGCACGTAT
1 TGCATTCATGGAGTACCGAAGTACAAACAGGGGCACGTAT
10215819 AAGCATTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 20 0.57
40 7 0.20
41 8 0.23
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.20
Consensus pattern (41 bp):
TGCATTCATGGAGTACCGAAGTACAAACAGGGGCACGTATG
Found at i:10215825 original size:39 final size:41
Alignment explanation
Indices: 10215735--10215826 Score: 116
Period size: 39 Copynumber: 2.3 Consensus size: 41
10215725 GCTGAGACAT
*
10215735 TATAATGCATTCATGGAGTACCGAAGTACAAACAGGGGCATG
1 TATAA-GCATTCATGGAGTACCGAAGTACAAACAGGGGCACG
** * *
10215777 TATGTGCATTCA-GGGGTACC-CAGTACAAACAGGGGCACG
1 TATAAGCATTCATGGAGTACCGAAGTACAAACAGGGGCACG
10215816 TATAAGCATTC
1 TATAAGCATTC
10215827 TTATATAATC
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
39 26 0.60
40 7 0.16
41 7 0.16
42 3 0.07
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.22
Consensus pattern (41 bp):
TATAAGCATTCATGGAGTACCGAAGTACAAACAGGGGCACG
Found at i:10218613 original size:39 final size:40
Alignment explanation
Indices: 10218559--10218672 Score: 133
Period size: 39 Copynumber: 2.9 Consensus size: 40
10218549 AATACACCGA
10218559 CACACAGCCTGCTAGGCACATAGCCTGAATAATCACT-GG
1 CACACAGCCTGCTAGGCACATAGCCTGAATAATCACTCGG
* * *
10218598 CACACTGCCTGCTAGGCACAAATCCTGAATAATCA-TCGG
1 CACACAGCCTGCTAGGCACATAGCCTGAATAATCACTCGG
* * * * **
10218637 TACACCGTCTACTAGGCACATAGCCCAAATAATCAC
1 CACACAGCCTGCTAGGCACATAGCCTGAATAATCAC
10218673 AAAGCTCTAA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
38 1 0.02
39 61 0.98
ACGTcount: A:0.32, C:0.32, G:0.17, T:0.19
Consensus pattern (40 bp):
CACACAGCCTGCTAGGCACATAGCCTGAATAATCACTCGG
Found at i:10218760 original size:39 final size:39
Alignment explanation
Indices: 10218694--10218888 Score: 236
Period size: 39 Copynumber: 5.1 Consensus size: 39
10218684 AATTAACGGT
*
10218694 ACACAGCCTGC-AGACACAT-GCCCGAATAATCACTGGC
1 ACACAGCCTGCTAGGCACATAGCCCGAATAATCACTGGC
* *
10218731 ACAAAACCTGCTAGGCACATAGCCCGAATAATCACCT-GC
1 ACACAGCCTGCTAGGCACATAGCCCGAATAATCA-CTGGC
* *
10218770 ACACAGCCTGCTAGGCACATAGCCTGAATAATCACCGGC
1 ACACAGCCTGCTAGGCACATAGCCCGAATAATCACTGGC
* *
10218809 ATACAGCCTGCTAGGCACATAGCCCGAATAATCA-TCGAC
1 ACACAGCCTGCTAGGCACATAGCCCGAATAATCACT-GGC
* * ** *
10218848 ACACGGCCTGCTAAGCACATAGCTTGAATAATCACCGGC
1 ACACAGCCTGCTAGGCACATAGCCCGAATAATCACTGGC
10218887 AC
1 AC
10218889 TGTAACACCC
Statistics
Matches: 134, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
37 9 0.07
38 8 0.06
39 115 0.86
40 2 0.01
ACGTcount: A:0.33, C:0.33, G:0.18, T:0.16
Consensus pattern (39 bp):
ACACAGCCTGCTAGGCACATAGCCCGAATAATCACTGGC
Found at i:10218821 original size:78 final size:78
Alignment explanation
Indices: 10218694--10218888 Score: 270
Period size: 78 Copynumber: 2.5 Consensus size: 78
10218684 AATTAACGGT
* * *
10218694 ACACAGCCTGC-AGACACAT-GCCCGAATAATCACTGGCACAAAACCTGCTAGGCACATAGCCCG
1 ACACAGCCTGCTAGGCACATAGCCTGAATAATCACCGGCACAAAACCTGCTAGGCACATAGCCCG
10218757 AATAATCACCTG-C
66 AATAATCACC-GAC
* * *
10218770 ACACAGCCTGCTAGGCACATAGCCTGAATAATCACCGGCATACAGCCTGCTAGGCACATAGCCCG
1 ACACAGCCTGCTAGGCACATAGCCTGAATAATCACCGGCACAAAACCTGCTAGGCACATAGCCCG
*
10218835 AATAATCATCGAC
66 AATAATCACCGAC
* * *
10218848 ACACGGCCTGCTAAGCACATAGCTTGAATAATCACCGGCAC
1 ACACAGCCTGCTAGGCACATAGCCTGAATAATCACCGGCAC
10218889 TGTAACACCC
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
76 11 0.10
77 8 0.08
78 86 0.82
ACGTcount: A:0.33, C:0.33, G:0.18, T:0.16
Consensus pattern (78 bp):
ACACAGCCTGCTAGGCACATAGCCTGAATAATCACCGGCACAAAACCTGCTAGGCACATAGCCCG
AATAATCACCGAC
Found at i:10220276 original size:104 final size:105
Alignment explanation
Indices: 10220096--10220363 Score: 450
Period size: 104 Copynumber: 2.6 Consensus size: 105
10220086 TAACCGTTAT
* **
10220096 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
10220161 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
10220200 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
10220265 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
10220305 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
10220364 TTATATACAA
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 82 0.53
105 71 0.46
106 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:10220732 original size:30 final size:30
Alignment explanation
Indices: 10220698--10220755 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
10220688 CCACCCAACT
10220698 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
*** * *
10220728 TTTTGCGTAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
10220756 GCTCGGAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:10221615 original size:39 final size:38
Alignment explanation
Indices: 10221571--10221684 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 38
10221561 CTGTTACAGG
*
10221571 CACACAGCCTGCTAGGCACATAGCTCGAATAATCATCGA
1 CACACAGCCTGCTAGGCACATAGC-CGAATAATCACCGA
*
10221610 CACACAGCCTGCTAGGCACATAGCCTGAATAATCACCGG
1 CACACAGCCTGCTAGGCACATAGCC-GAATAATCACCGA
*
10221649 CACACAGCCTGTTAGGCACATAGCCCGAATAATCAC
1 CACACAGCCTGCTAGGCACATAG-CCGAATAATCAC
10221685 TATATTTCTA
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
38 1 0.01
39 67 0.96
40 2 0.03
ACGTcount: A:0.32, C:0.32, G:0.18, T:0.17
Consensus pattern (38 bp):
CACACAGCCTGCTAGGCACATAGCCGAATAATCACCGA
Found at i:10222059 original size:17 final size:18
Alignment explanation
Indices: 10222018--10222051 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
10222008 CTCGAAATTC
10222018 ATCAAATCAACTAATTTT
1 ATCAAATCAACTAATTTT
10222036 ATCAAATCAA-TAATTT
1 ATCAAATCAACTAATTT
10222052 ATCCAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (18 bp):
ATCAAATCAACTAATTTT
Found at i:10228761 original size:66 final size:66
Alignment explanation
Indices: 10228655--10228912 Score: 507
Period size: 66 Copynumber: 3.9 Consensus size: 66
10228645 CATTTCAGAG
10228655 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
1 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
10228720 T
66 T
10228721 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
1 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
10228786 T
66 T
10228787 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
1 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
10228852 T
66 T
*
10228853 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGCCTAAATCCCCTG
1 AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTG
10228913 TAATATAAAC
Statistics
Matches: 191, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 191 1.00
ACGTcount: A:0.27, C:0.37, G:0.18, T:0.18
Consensus pattern (66 bp):
AGCACACTCCCGCGAACCTCATCCTTACAGCGGGATTACCAGTCCAGGCTAAATCCCCTGCAAGA
T
Found at i:10229134 original size:57 final size:60
Alignment explanation
Indices: 10229046--10229181 Score: 190
Period size: 57 Copynumber: 2.3 Consensus size: 60
10229036 ATTACCCGTT
* *
10229046 CGGGCTAAATCCATTTTCCACATATTCTTCGGGAGGGCTATATC-A-A-GATCACACGTC
1 CGGGCTAGATCCTTTTTCCACATATTCTTCGGGAGGGCTATATCGATAGGATCACACGTC
*
10229103 CGGGCTAGAT-CTTTTTCACACATATTCTTCGGGAGGGCTATATCAGGATAGGATCACCCGTC
1 CGGGCTAGATCCTTTTTC-CACATATTCTTCGGGAGGGCTATATC--GATAGGATCACACGTC
10229165 CGGGCTAGATCCTTTTT
1 CGGGCTAGATCCTTTTT
10229182 ACCGTCAATT
Statistics
Matches: 69, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
56 6 0.09
57 35 0.51
60 1 0.01
61 1 0.01
62 20 0.29
63 6 0.09
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (60 bp):
CGGGCTAGATCCTTTTTCCACATATTCTTCGGGAGGGCTATATCGATAGGATCACACGTC
Found at i:10232194 original size:39 final size:39
Alignment explanation
Indices: 10232151--10232370 Score: 273
Period size: 39 Copynumber: 5.6 Consensus size: 39
10232141 ATACAACCTA
* *
10232151 CTAGGCATATAGCCCGAATAATCACCGGCACAGAGCCTG
1 CTAGGCACATAGCCCGAATAATCACCGGCACACAGCCTG
* * * *
10232190 CTAGGCACAAAGCCCGAATAATTACCGACACACTA-CTTG
1 CTAGGCACATAGCCCGAATAATCACCGGCACAC-AGCCTG
*
10232229 CTAGGCACATAGCCTGAATAATCACCGGCACACAGCCTG
1 CTAGGCACATAGCCCGAATAATCACCGGCACACAGCCTG
*
10232268 CTAGGCACAT-GCCTCGAATAATCAACGGCACACAGCCTG
1 CTAGGCACATAGCC-CGAATAATCACCGGCACACAGCCTG
* * * *
10232307 CTAGGCACATAGCCCAAATAATTACCGGCACACAACTTG
1 CTAGGCACATAGCCCGAATAATCACCGGCACACAGCCTG
* * *
10232346 CTAAGCAAATAGCTCGAATAATCAC
1 CTAGGCACATAGCCCGAATAATCAC
10232371 TATATTTCTA
Statistics
Matches: 154, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
38 4 0.03
39 146 0.95
40 4 0.03
ACGTcount: A:0.34, C:0.31, G:0.18, T:0.17
Consensus pattern (39 bp):
CTAGGCACATAGCCCGAATAATCACCGGCACACAGCCTG
Found at i:10232345 original size:117 final size:117
Alignment explanation
Indices: 10232151--10232370 Score: 327
Period size: 117 Copynumber: 1.9 Consensus size: 117
10232141 ATACAACCTA
* * * *
10232151 CTAGGCATATAGCCCGAATAATCACCGGCACAGAGCCTGCTAGGCACAAAGCCCGAATAATTACC
1 CTAGGCACATAGCCCGAATAATCAACGGCACACAGCCTGCTAGGCACAAAGCCCAAATAATTACC
* * *
10232216 GACACACTACTTGCTAGGCACATAGC-CTGAATAATCACCGGCACACAGCCTG
66 GACACACAACTTGCTAAGCAAATAGCTC-GAATAATCACCGGCACACAGCCTG
*
10232268 CTAGGCACAT-GCCTCGAATAATCAACGGCACACAGCCTGCTAGGCACATAGCCCAAATAATTAC
1 CTAGGCACATAGCC-CGAATAATCAACGGCACACAGCCTGCTAGGCACAAAGCCCAAATAATTAC
*
10232332 CGGCACACAACTTGCTAAGCAAATAGCTCGAATAATCAC
65 CGACACACAACTTGCTAAGCAAATAGCTCGAATAATCAC
10232371 TATATTTCTA
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
116 3 0.03
117 88 0.96
118 1 0.01
ACGTcount: A:0.34, C:0.31, G:0.18, T:0.17
Consensus pattern (117 bp):
CTAGGCACATAGCCCGAATAATCAACGGCACACAGCCTGCTAGGCACAAAGCCCAAATAATTACC
GACACACAACTTGCTAAGCAAATAGCTCGAATAATCACCGGCACACAGCCTG
Found at i:10258083 original size:35 final size:35
Alignment explanation
Indices: 10258014--10258106 Score: 107
Period size: 35 Copynumber: 2.7 Consensus size: 35
10258004 TGATATTTTA
* * *
10258014 GTTTGCATGTTAAGTATGTCACTATATTGTTTCTG
1 GTTTGCATGTTAAGCATGCCACTATATTGATTCTG
10258049 GTTTGCATGTTAAGCATGCCACTATACTT-ATTCTG
1 GTTTGCATGTTAAGCATGCCACTATA-TTGATTCTG
* * * *
10258084 ATTCGCATGTAAAACATGCCACT
1 GTTTGCATGTTAAGCATGCCACT
10258107 GTGTTAAATC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
35 48 0.96
36 2 0.04
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40
Consensus pattern (35 bp):
GTTTGCATGTTAAGCATGCCACTATATTGATTCTG
Found at i:10268420 original size:20 final size:21
Alignment explanation
Indices: 10268391--10268429 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
10268381 GAGCTTGCCT
*
10268391 TTATT-TTTTTATTTTAAATC
1 TTATTATTTTGATTTTAAATC
10268411 TTATTATTTTGATTTTAAA
1 TTATTATTTTGATTTTAAA
10268430 AGGATATTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (21 bp):
TTATTATTTTGATTTTAAATC
Found at i:10274618 original size:26 final size:27
Alignment explanation
Indices: 10274538--10274621 Score: 134
Period size: 27 Copynumber: 3.1 Consensus size: 27
10274528 TTACACTGTT
*
10274538 ATGACTGAAATACCCCCATAGGGTAAA
1 ATGATTGAAATACCCCCATAGGGTAAA
*
10274565 ATGATCGAAATACCCCCATAGGGTAAA
1 ATGATTGAAATACCCCCATAGGGTAAA
*
10274592 ATGATTGAAATA-CCCTATAGGGTAAA
1 ATGATTGAAATACCCCCATAGGGTAAA
10274618 ATGA
1 ATGA
10274622 CTGTTATACC
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 17 0.32
27 36 0.68
ACGTcount: A:0.42, C:0.18, G:0.19, T:0.21
Consensus pattern (27 bp):
ATGATTGAAATACCCCCATAGGGTAAA
Found at i:10277551 original size:20 final size:20
Alignment explanation
Indices: 10277528--10277569 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
10277518 ATTATTGGGC
10277528 GCAAGTATTGATACTTCTGA
1 GCAAGTATTGATACTTCTGA
10277548 GCAAGTATTGATACTTCTGA
1 GCAAGTATTGATACTTCTGA
10277568 GC
1 GC
10277570 TAATTTGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (20 bp):
GCAAGTATTGATACTTCTGA
Found at i:10281552 original size:615 final size:615
Alignment explanation
Indices: 10280380--10282230 Score: 3648
Period size: 615 Copynumber: 3.0 Consensus size: 615
10280370 ATCATTAAGG
10280380 CACGCAACATCCTTGTTGCCATTGAGCACATCGTGACACAACTTTAAGACATCTTTTCCAACTAC
1 CACGCAACATCCTTGTTGCCATTGAGCACATCGTGACACAACTTTAAGACATCTTTTCCAACTAC
10280445 GGCCCAGTGCTTTTTGAAGAAGCAACCTGATAAACCATCACTCCCCGGAGCTTTTCGCTGGTCCA
66 GGCCCAGTGCTTTTTGAAGAAGCAACCTGATAAACCATCACTCCCCGGAGCTTTTCGCTGGTCCA
10280510 TATGGTTAAAAGCAGCAACAATTTCTTCATCAATAAAGTCCCTGTCCAAGCAAGAGTTCATATTG
131 TATGGTTAAAAGCAGCAACAATTTCTTCATCAATAAAGTCCCTGTCCAAGCAAGAGTTCATATTG
10280575 TCAGTAATGCACGTTTGGATATAATGCATGTCAGGTTCATTACAAGAAACAATGGTTGACTTAAA
196 TCAGTAATGCACGTTTGGATATAATGCATGTCAGGTTCATTACAAGAAACAATGGTTGACTTAAA
10280640 AAGATCATTAAAATAGTCCCATGCAACTTTACAGATGTCCCTCTTGTCTTTTTGCCACGTCCCAT
261 AAGATCATTAAAATAGTCCCATGCAACTTTACAGATGTCCCTCTTGTCTTTTTGCCACGTCCCAT
10280705 TAGAATCTTTTAACTTTTCTATATTGTGTTCTTTCTTCTGCCAGTAGCGTGCATGTGAAAATAAC
326 TAGAATCTTTTAACTTTTCTATATTGTGTTCTTTCTTCTGCCAGTAGCGTGCATGTGAAAATAAC
10280770 GGGTGTTTCTATCACCCTCCGTGAGCCACTTAATGTGAGCCCTTTGTGCCCAATAGTCCTCATCC
391 GGGTGTTTCTATCACCCTCCGTGAGCCACTTAATGTGAGCCCTTTGTGCCCAATAGTCCTCATCC
10280835 ACAACATACAAGTGCCCAAGCTTGAAGCGAGCCATTTTAAGGAGGTTAGTTGTGTTATCCCTGTT
456 ACAACATACAAGTGCCCAAGCTTGAAGCGAGCCATTTTAAGGAGGTTAGTTGTGTTATCCCTGTT
10280900 TGGACCATCCACAAGCTGATTGATCTTCCTCTTCAGACCCCATATTTGGTTCATCATTCTTTTAT
521 TGGACCATCCACAAGCTGATTGATCTTCCTCTTCAGACCCCATATTTGGTTCATCATTCTTTTAT
10280965 AACGCTTATACTACCACAACTCAAGCTAAT
586 AACGCTTATACTACCACAACTCAAGCTAAT
10280995 CACGCAACATCCTTGTTGCCATTGAGCACATCGTGACACAACTTTAAGACATCTTTTCCAACTAC
1 CACGCAACATCCTTGTTGCCATTGAGCACATCGTGACACAACTTTAAGACATCTTTTCCAACTAC
10281060 GGCCCAGTGCTTTTTGAAGAAGCAACCTGATAAACCATCACTCCCCGGAGCTTTTCGCTGGTCCA
66 GGCCCAGTGCTTTTTGAAGAAGCAACCTGATAAACCATCACTCCCCGGAGCTTTTCGCTGGTCCA
*
10281125 TATGGTTAAAAGCAGCAACAATTTCTTCATCAGTAAAGTCCCTGTCCAAGCAAGAGTTCATATTG
131 TATGGTTAAAAGCAGCAACAATTTCTTCATCAATAAAGTCCCTGTCCAAGCAAGAGTTCATATTG
10281190 TCAGTAATGCACGTTTGGATATAATGCATGTCAGGTTCATTACAAGAAACAATGGTTGACTTAAA
196 TCAGTAATGCACGTTTGGATATAATGCATGTCAGGTTCATTACAAGAAACAATGGTTGACTTAAA
10281255 AAGATCATTAAAATAGTCCCATGCAACTTTACAGATGTCCCTCTTGTCTTTTTGCCACGTCCCAT
261 AAGATCATTAAAATAGTCCCATGCAACTTTACAGATGTCCCTCTTGTCTTTTTGCCACGTCCCAT
*
10281320 TAGAATCTTTTAACTTTTCTATATTGTGTTCTTTCTTCTGCCAGTAGCGTGCATATGAAAATAAC
326 TAGAATCTTTTAACTTTTCTATATTGTGTTCTTTCTTCTGCCAGTAGCGTGCATGTGAAAATAAC
10281385 GGGTGTTTCTATCACCCTCCGTGAGCCACTTAATGTGAGCCCTTTGTGCCCAATAGTCCTCATCC
391 GGGTGTTTCTATCACCCTCCGTGAGCCACTTAATGTGAGCCCTTTGTGCCCAATAGTCCTCATCC
*
10281450 ACAGCATACAAGTGCCCAAGCTTGAAGCGAGCCATTTTAAGGAGGTTAGTTGTGTTATCCCTGTT
456 ACAACATACAAGTGCCCAAGCTTGAAGCGAGCCATTTTAAGGAGGTTAGTTGTGTTATCCCTGTT
* * *
10281515 TGGACCATCTACAAGTTGATTGATCTTCCTTTTCAGACCCCATATTTGGTTCATCATTCTTTTAT
521 TGGACCATCCACAAGCTGATTGATCTTCCTCTTCAGACCCCATATTTGGTTCATCATTCTTTTAT
10281580 AACGCTTATACTACCACAACTCAAGCTAAT
586 AACGCTTATACTACCACAACTCAAGCTAAT
10281610 CACGCAACATCCTTGTTGCCATTGAGCACATCGTGACACAACTTTAAGACATCTTTTCCAACTAC
1 CACGCAACATCCTTGTTGCCATTGAGCACATCGTGACACAACTTTAAGACATCTTTTCCAACTAC
10281675 GGCCCAGTGCTTTTTGAAGAAGCAACCTGATAAACCATCACTCCCCGGAGCTTTTCGCTGGTCCA
66 GGCCCAGTGCTTTTTGAAGAAGCAACCTGATAAACCATCACTCCCCGGAGCTTTTCGCTGGTCCA
10281740 TATGGTTAAAAGCAGCAACAATTTCTTCATCAATAAAGTCCCTGTCCAAGCAAGAGTTCATATTG
131 TATGGTTAAAAGCAGCAACAATTTCTTCATCAATAAAGTCCCTGTCCAAGCAAGAGTTCATATTG
10281805 TCAGTAATGCACGTTTGGATATAATGCATGTCAGGTTCATTACAAGAAACAATGGTTGACTTAAA
196 TCAGTAATGCACGTTTGGATATAATGCATGTCAGGTTCATTACAAGAAACAATGGTTGACTTAAA
10281870 AAGATCATTAAAATAGTCCCATGCAACTTTACAGATGTCCCTCTTGTCTTTTTGCCACGTCCCAT
261 AAGATCATTAAAATAGTCCCATGCAACTTTACAGATGTCCCTCTTGTCTTTTTGCCACGTCCCAT
10281935 TAGAATCTTTTAACTTTTCTATATTGTGTTCTTTCTTCTGCCAGTAGCGTGCATGTGAAAATAAC
326 TAGAATCTTTTAACTTTTCTATATTGTGTTCTTTCTTCTGCCAGTAGCGTGCATGTGAAAATAAC
10282000 GGGTGTTTCTATCACCCTCCGTGAGCCACTTAATGTGAGCCCTTTGTGCCCAATAGTCCTCATCC
391 GGGTGTTTCTATCACCCTCCGTGAGCCACTTAATGTGAGCCCTTTGTGCCCAATAGTCCTCATCC
10282065 ACAACATACAAGTGCCCAAGCTTGAAGCGAGCCATTTTAAGGAGGTTAGTTGTGTTATCCCTGTT
456 ACAACATACAAGTGCCCAAGCTTGAAGCGAGCCATTTTAAGGAGGTTAGTTGTGTTATCCCTGTT
10282130 TGGACCATCCACAAGCTGATTGATCTTCCTCTTCAGACCCCATATTTGGTTCATCATTCTTTTAT
521 TGGACCATCCACAAGCTGATTGATCTTCCTCTTCAGACCCCATATTTGGTTCATCATTCTTTTAT
10282195 AACGCTTATACTACCACAACTCAAGCTAAT
586 AACGCTTATACTACCACAACTCAAGCTAAT
10282225 CACGCA
1 CACGCA
10282231 CCTTATCCAT
Statistics
Matches: 1224, Mismatches: 12, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
615 1224 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (615 bp):
CACGCAACATCCTTGTTGCCATTGAGCACATCGTGACACAACTTTAAGACATCTTTTCCAACTAC
GGCCCAGTGCTTTTTGAAGAAGCAACCTGATAAACCATCACTCCCCGGAGCTTTTCGCTGGTCCA
TATGGTTAAAAGCAGCAACAATTTCTTCATCAATAAAGTCCCTGTCCAAGCAAGAGTTCATATTG
TCAGTAATGCACGTTTGGATATAATGCATGTCAGGTTCATTACAAGAAACAATGGTTGACTTAAA
AAGATCATTAAAATAGTCCCATGCAACTTTACAGATGTCCCTCTTGTCTTTTTGCCACGTCCCAT
TAGAATCTTTTAACTTTTCTATATTGTGTTCTTTCTTCTGCCAGTAGCGTGCATGTGAAAATAAC
GGGTGTTTCTATCACCCTCCGTGAGCCACTTAATGTGAGCCCTTTGTGCCCAATAGTCCTCATCC
ACAACATACAAGTGCCCAAGCTTGAAGCGAGCCATTTTAAGGAGGTTAGTTGTGTTATCCCTGTT
TGGACCATCCACAAGCTGATTGATCTTCCTCTTCAGACCCCATATTTGGTTCATCATTCTTTTAT
AACGCTTATACTACCACAACTCAAGCTAAT
Found at i:10287891 original size:91 final size:91
Alignment explanation
Indices: 10287736--10287915 Score: 317
Period size: 91 Copynumber: 2.0 Consensus size: 91
10287726 CTTGGATATA
*
10287736 CGTTCCTCAATTATGTGGCCCAAATGACAATGCCATGGAAAAGTTTGATTTGAGTCATTTATTTT
1 CGTTCCTCAATTATGTGGCCCAAATGACAATGCCATAGAAAAGTTTGATTTGAGTCATTTATTTT
10287801 TGATCTTTTAGTATTTATGTTGTATG
66 TGATCTTTTAGTATTTATGTTGTATG
* *
10287827 CGTTCCTCACTTATGTGGCCCAAACT-ACAATGCCATAGATAAGTTTGATTTGAGTCATTTATTT
1 CGTTCCTCAATTATGTGGCCCAAA-TGACAATGCCATAGAAAAGTTTGATTTGAGTCATTTATTT
10287891 TTGATCTTTTAGTATTTATGTTGTA
65 TTGATCTTTTAGTATTTATGTTGTA
10287916 AATGAGATTC
Statistics
Matches: 85, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
91 84 0.99
92 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.17, T:0.43
Consensus pattern (91 bp):
CGTTCCTCAATTATGTGGCCCAAATGACAATGCCATAGAAAAGTTTGATTTGAGTCATTTATTTT
TGATCTTTTAGTATTTATGTTGTATG
Found at i:10292987 original size:19 final size:19
Alignment explanation
Indices: 10292963--10292999 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
10292953 TCAATATTTG
*
10292963 GCTAGCTTATTTCTAAGTA
1 GCTAGCATATTTCTAAGTA
10292982 GCTAGCATATTTCTAAGT
1 GCTAGCATATTTCTAAGT
10293000 GCATGGTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (19 bp):
GCTAGCATATTTCTAAGTA
Found at i:10295359 original size:29 final size:28
Alignment explanation
Indices: 10295323--10295400 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
10295313 TCATGAGATT
10295323 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
10295353 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
10295380 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
10295401 GTATTTTCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:10314883 original size:9 final size:9
Alignment explanation
Indices: 10314869--10314898 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
10314859 TTTGTGCCAT
10314869 CAACATGGC
1 CAACATGGC
10314878 CAACATGGC
1 CAACATGGC
10314887 CAACATGGC
1 CAACATGGC
10314896 CAA
1 CAA
10314899 TGTGATCTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.37, C:0.33, G:0.20, T:0.10
Consensus pattern (9 bp):
CAACATGGC
Found at i:10316380 original size:13 final size:13
Alignment explanation
Indices: 10316358--10316391 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
10316348 TTTTCAAGTC
* *
10316358 ATGTTCTAAAGCT
1 ATGTTTTAAAGAT
10316371 ATGTTTTAAAGAT
1 ATGTTTTAAAGAT
10316384 ATGTTTTA
1 ATGTTTTA
10316392 TGCGTGCTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (13 bp):
ATGTTTTAAAGAT
Found at i:10322257 original size:21 final size:21
Alignment explanation
Indices: 10322225--10322265 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
10322215 AGGCTCGAGG
10322225 GGCCTGTTTTAGACC-ATACAA
1 GGCCTGTTTTAG-CCTATACAA
10322246 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
10322266 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:10329343 original size:2 final size:2
Alignment explanation
Indices: 10329336--10329376 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
10329326 CACTACATAT
10329336 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
10329377 ATGAGAGTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:10333651 original size:3 final size:3
Alignment explanation
Indices: 10333643--10333673 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
10333633 TTTTCTACAT
10333643 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
10333674 GACTCATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:10335818 original size:19 final size:19
Alignment explanation
Indices: 10335794--10335836 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
10335784 AATCTTCAGG
10335794 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
10335813 GATATATAATCTTAGATAT
1 GATATACAATCTTAGATAT
10335832 GATAT
1 GATAT
10335837 GCATTTTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.40
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:10335846 original size:19 final size:18
Alignment explanation
Indices: 10335805--10335859 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 18
10335795 ATATACAATC
*
10335805 TTAGATATGATAT-ATAATC
1 TTAGATATGATATGAT--TT
10335824 TTAGATATGATATGCATTT
1 TTAGATATGATATG-ATTT
10335843 TTAGA-A-GATATGATTT
1 TTAGATATGATATGATTT
10335859 T
1 T
10335860 GTAATATTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
16 5 0.15
17 6 0.18
18 1 0.03
19 19 0.58
21 2 0.06
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (18 bp):
TTAGATATGATATGATTT
Found at i:10336427 original size:21 final size:19
Alignment explanation
Indices: 10336387--10336464 Score: 57
Period size: 19 Copynumber: 3.6 Consensus size: 19
10336377 ATTAGTTTTT
*
10336387 TTATTCTTTTTTATATTTAG
1 TTATT-TTTTTTATAATTAG
10336407 TTATTTTTTTTAAATAATTAG
1 TTATTTTTTTT--ATAATTAG
*
10336428 TTTTTTTATTCTTTTTTATATTTAG
1 -----TTATT-TTTTTTATAATTAG
10336453 TTATTTTTTTTA
1 TTATTTTTTTTA
10336465 AAAATATATG
Statistics
Matches: 48, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
19 13 0.27
20 10 0.21
21 7 0.15
25 7 0.15
26 5 0.10
27 6 0.12
ACGTcount: A:0.22, C:0.03, G:0.04, T:0.72
Consensus pattern (19 bp):
TTATTTTTTTTATAATTAG
Found at i:10336432 original size:46 final size:46
Alignment explanation
Indices: 10336367--10336466 Score: 184
Period size: 46 Copynumber: 2.2 Consensus size: 46
10336357 ATTTTCTTTA
*
10336367 TTTTTT-ATTAATTAGTTTTTTTATTCTTTTTTATATTTAGTTATT
1 TTTTTTAAATAATTAGTTTTTTTATTCTTTTTTATATTTAGTTATT
10336412 TTTTTTAAATAATTAGTTTTTTTATTCTTTTTTATATTTAGTTATT
1 TTTTTTAAATAATTAGTTTTTTTATTCTTTTTTATATTTAGTTATT
10336458 TTTTTTAAA
1 TTTTTTAAA
10336467 AATATATGTA
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 6 0.11
46 47 0.89
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (46 bp):
TTTTTTAAATAATTAGTTTTTTTATTCTTTTTTATATTTAGTTATT
Found at i:10336459 original size:25 final size:25
Alignment explanation
Indices: 10336367--10336459 Score: 95
Period size: 25 Copynumber: 3.8 Consensus size: 25
10336357 ATTTTCTTTA
*
10336367 TTTTTTATTAATTAGTTTTTTTATTC
1 TTTTTTA-TAATTAGTTATTTTATTC
*
10336393 TTTTTTATATTTAGTTA--TT-TT-
1 TTTTTTATAATTAGTTATTTTATTC
** *
10336414 TTTTAAATAATTAGTTTTTTTATTC
1 TTTTTTATAATTAGTTATTTTATTC
*
10336439 TTTTTTATATTTAGTTATTTT
1 TTTTTTATAATTAGTTATTTT
10336460 TTTTAAAAAT
Statistics
Matches: 53, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
21 13 0.25
22 2 0.04
23 4 0.08
24 2 0.04
25 25 0.47
26 7 0.13
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (25 bp):
TTTTTTATAATTAGTTATTTTATTC
Found at i:10336472 original size:25 final size:25
Alignment explanation
Indices: 10336398--10336473 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 25
10336388 TATTCTTTTT
10336398 TATATTTAGTTATTTTTTTTAAATAA
1 TATATTTAGTTATTTTTTTTAAA-AA
** *
10336424 T-TAGTTTTTTTATTCTTTTT-----
1 TATA-TTTAGTTATTTTTTTTAAAAA
10336444 TATATTTAGTTATTTTTTTTAAAAA
1 TATATTTAGTTATTTTTTTTAAAAA
10336469 TATAT
1 TATAT
10336474 GTATATATGT
Statistics
Matches: 37, Mismatches: 6, Indels: 15
0.64 0.10 0.26
Matches are distributed among these distances:
20 14 0.38
21 2 0.05
25 7 0.19
26 14 0.38
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (25 bp):
TATATTTAGTTATTTTTTTTAAAAA
Found at i:10336554 original size:21 final size:20
Alignment explanation
Indices: 10336527--10336580 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 20
10336517 TAATAATTAT
10336527 TATTATTATTTATTTATATG
1 TATTATTATTTATTTATATG
* *
10336547 TAATTATTTTTTATCTATATG
1 T-ATTATTATTTATTTATATG
10336568 TA-TA-TATTTATTT
1 TATTATTATTTATTT
10336581 TAGTATACAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 7 0.24
19 2 0.07
20 2 0.07
21 18 0.62
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (20 bp):
TATTATTATTTATTTATATG
Found at i:10336571 original size:27 final size:27
Alignment explanation
Indices: 10336520--10336572 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
10336510 TGTAGTATAA
*
10336520 TAATTATTATTATTATTTATTTATATG
1 TAATTATTATTATTATTTATGTATATG
10336547 TAATTATT-TT-TTATCTATATGTATAT
1 TAATTATTATTATTAT-T-TATGTATAT
10336573 ATTTATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 4 0.17
26 3 0.13
27 16 0.70
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (27 bp):
TAATTATTATTATTATTTATGTATATG
Found at i:10338341 original size:17 final size:17
Alignment explanation
Indices: 10338293--10338341 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
10338283 TCTCCTAACA
* *
10338293 GAGCTCCCATCTTTGGT
1 GAGCTCGCATCTTTGAT
*
10338310 GAGCTCGGA-CATTTGAT
1 GAGCTCGCATC-TTTGAT
10338327 GAGCTCGCATCTTTG
1 GAGCTCGCATCTTTG
10338342 CAATTTGTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 1 0.04
17 24 0.92
18 1 0.04
ACGTcount: A:0.16, C:0.24, G:0.27, T:0.33
Consensus pattern (17 bp):
GAGCTCGCATCTTTGAT
Found at i:10342289 original size:23 final size:23
Alignment explanation
Indices: 10342263--10342338 Score: 93
Period size: 23 Copynumber: 3.3 Consensus size: 23
10342253 ATAAGTGCCA
*
10342263 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGTCGAAGCTAC
* *
10342286 CACTAAAATGTAGTC-ATAGCTAC
1 CACTGATATGTAGTCGA-AGCTAC
10342309 CACTGA-ATTGTAGTCGAAGCTAC
1 CACTGATA-TGTAGTCGAAGCTAC
10342332 CACTGAT
1 CACTGAT
10342339 CAATAATATT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
22 2 0.04
23 42 0.93
24 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (23 bp):
CACTGATATGTAGTCGAAGCTAC
Found at i:10348622 original size:24 final size:24
Alignment explanation
Indices: 10348595--10348649 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 24
10348585 CTATATGTTA
* *
10348595 CCTTAGTGGCGTATTGTGTTTGGC
1 CCTTAGTGGCGTACTCTGTTTGGC
*
10348619 CCTTA-TGGTGTACTCTGTTTGGC
1 CCTTAGTGGCGTACTCTGTTTGGC
10348642 CCTT-GTGG
1 CCTTAGTGG
10348650 TGAATTATGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 22 0.81
24 5 0.19
ACGTcount: A:0.07, C:0.20, G:0.31, T:0.42
Consensus pattern (24 bp):
CCTTAGTGGCGTACTCTGTTTGGC
Found at i:10352470 original size:12 final size:12
Alignment explanation
Indices: 10352453--10352483 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
10352443 CTCTAGTTTT
10352453 CACACGGCCTAG
1 CACACGGCCTAG
*
10352465 CACACGGCCTGG
1 CACACGGCCTAG
10352477 CACACGG
1 CACACGG
10352484 GCGTGTGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.42, G:0.29, T:0.06
Consensus pattern (12 bp):
CACACGGCCTAG
Found at i:10354151 original size:23 final size:23
Alignment explanation
Indices: 10354121--10354237 Score: 155
Period size: 23 Copynumber: 5.1 Consensus size: 23
10354111 TATTGGTCAC
*
10354121 TGGTAGCTTCAGCTACA-ATTCAG
1 TGGTAGCTTCGGCTACATA-TCAG
* *
10354144 TGGTAGCTACGGCTACATATCAT
1 TGGTAGCTTCGGCTACATATCAG
* *
10354167 TGGTAGCTTCGACTACATTTCAG
1 TGGTAGCTTCGGCTACATATCAG
*
10354190 TGGTAGCTACGGCTACATATCAG
1 TGGTAGCTTCGGCTACATATCAG
*
10354213 TGGTAACTTCGGCTACATATCAG
1 TGGTAGCTTCGGCTACATATCAG
10354236 TG
1 TG
10354238 TGGCACTTAT
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
23 80 0.99
24 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (23 bp):
TGGTAGCTTCGGCTACATATCAG
Found at i:10368741 original size:21 final size:21
Alignment explanation
Indices: 10368704--10368743 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10368694 AAAGTAAAAA
*
10368704 TTATTTACATAATTTTAAATT
1 TTATTTACAAAATTTTAAATT
10368725 TTATTTA-AAAATATTTAAA
1 TTATTTACAAAAT-TTTAAA
10368744 AATGTTTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (21 bp):
TTATTTACAAAATTTTAAATT
Found at i:10368831 original size:55 final size:51
Alignment explanation
Indices: 10368772--10368933 Score: 134
Period size: 55 Copynumber: 3.1 Consensus size: 51
10368762 GCTTGGAGAT
**
10368772 TTTTGGTAACTACCTTTTACAATTATTTTTAAAATTATTATAATTTTTTAAACAA
1 TTTTGGTAA-TAATTTTTACAATTATTTTTAAAATTATTAT-ATTTTTT--ACAA
* * * *
10368827 TTTTGGTTAATATTTTTTACATTTGTTTTTTTAAAATTATTATA-GTTTTACAA
1 TTTTGG-TAATAATTTTTACA-AT-TATTTTTAAAATTATTATATTTTTTACAA
* * *
10368880 TTTT--TAAATAATTTTTATAATTATTTTTAAGATTATTATGA-TTTTTAAAA
1 TTTTGGT-AATAATTTTTACAATTATTTTTAAAATTATTAT-ATTTTTTACAA
10368930 TTTT
1 TTTT
10368934 TAACAATTCT
Statistics
Matches: 90, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
49 16 0.18
50 14 0.16
51 11 0.12
53 8 0.09
55 19 0.21
56 5 0.06
57 17 0.19
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.57
Consensus pattern (51 bp):
TTTTGGTAATAATTTTTACAATTATTTTTAAAATTATTATATTTTTTACAA
Found at i:10378206 original size:40 final size:40
Alignment explanation
Indices: 10378162--10378249 Score: 90
Period size: 42 Copynumber: 2.1 Consensus size: 40
10378152 TCGTAGGCTG
* *
10378162 CGTGTCACG-CCGTGTAACTCTCTGACTTGATACACAC-GAC
1 CGTGTCA-GACCGTGTAACTCACAGACTTGATACACACAG-C
* *
10378202 CGTGTTGCAGACTGTGTGACTCACAGACTTGATACACACAGC
1 CGTG-T-CAGACCGTGTAACTCACAGACTTGATACACACAGC
10378244 CGTGTC
1 CGTGTC
10378250 GCAGACCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
40 5 0.12
41 3 0.08
42 31 0.77
43 1 0.03
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (40 bp):
CGTGTCAGACCGTGTAACTCACAGACTTGATACACACAGC
Found at i:10378316 original size:29 final size:29
Alignment explanation
Indices: 10378236--10378316 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 29
10378226 AGACTTGATA
* *
10378236 CACACAGCCGTGTCGCAGACCATGTATGG
1 CACACGGCCGTGTCGCAGACCGTGTATGG
*
10378265 CACACGGCCGTGTCGCAAACCGTGTATGG
1 CACACGGCCGTGTCGCAGACCGTGTATGG
* *
10378294 CACACGGCCGTGTGGCAGCCCGT
1 CACACGGCCGTGTCGCAGACCGT
10378317 CTCCCAGGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (29 bp):
CACACGGCCGTGTCGCAGACCGTGTATGG
Found at i:10391122 original size:106 final size:105
Alignment explanation
Indices: 10390971--10391375 Score: 539
Period size: 106 Copynumber: 3.8 Consensus size: 105
10390961 AAATATACGA
* *
10390971 AAAAAATAAATAATTTTTTTTTAAAATTGTACTGGGTGCCGGCCATTGACAGGCCAACACCAAAA
1 AAAAAA-AAAGAATTTTTTTTT-AAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACC-AAA
* * *
10391036 TTTTTTTTTATTTTTTTCGTATATTTATTTTTTATTCTGACACG
63 TTTTTTTTT-TTTTTTTCGTATATTTATATCTGATTCTGACACG
* *
10391080 -AAAAAAAAGAATTTTTTTTTAATTTGTACTGGGTGCCAGCCATTGACAGGCCAGCACCAAA--T
1 AAAAAAAAAGAATTTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCAAATTT
*
10391142 TTTTTTATTTTTTCGTATATTTATATCTGATTCTGACACG
66 TTTTTTTTTTTTTCGTATATTTATATCTGATTCTGACACG
*
10391182 AAAAAAAAAGAATTTTTTTTAAAAAATTTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCCAA
1 AAAAAAAAAGAATTTTTTTT--TAAA-TTGTACTGGGTGCCGGCCATTGACAGGCCAGCA-CCAA
10391247 ATTTTTGTTATTTTTTATTT-GTATATTTATATCTGATTCTGACACG
62 ATTTTT-TT-TTTTTT-TTTCGTATATTTATATCTGATTCTGACACG
* * *
10391293 AAAAAAAATAAAAATATATTTTTTAAATTGTACTGGGTGCCGGCCATTGACAAGCCAGCACCAAA
1 -AAAAAAA-AAGAAT-TTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCAAA
10391358 TTTTTTTTTTTGTTTTTC
63 TTTTTTTTTTT-TTTTTC
10391376 TTTTTTTCCT
Statistics
Matches: 265, Mismatches: 16, Indels: 30
0.85 0.05 0.10
Matches are distributed among these distances:
102 30 0.11
103 26 0.10
105 5 0.02
106 67 0.25
107 19 0.07
108 12 0.05
109 7 0.03
110 12 0.05
111 63 0.24
112 13 0.05
113 5 0.02
114 6 0.02
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (105 bp):
AAAAAAAAAGAATTTTTTTTTAAATTGTACTGGGTGCCGGCCATTGACAGGCCAGCACCAAATTT
TTTTTTTTTTTTTCGTATATTTATATCTGATTCTGACACG
Found at i:10395294 original size:12 final size:12
Alignment explanation
Indices: 10395277--10395303 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
10395267 AATGGGACCT
10395277 GGAGGGCCGGGA
1 GGAGGGCCGGGA
10395289 GGAGGGCCGGGA
1 GGAGGGCCGGGA
10395301 GGA
1 GGA
10395304 CCTGGTGGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.15, G:0.67, T:0.00
Consensus pattern (12 bp):
GGAGGGCCGGGA
Found at i:10395339 original size:30 final size:29
Alignment explanation
Indices: 10395271--10395341 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 29
10395261 TAGCAAAATG
* *
10395271 GGACCTGGAGGGCCGGGAGGAGGGCCGGGA
1 GGACCTGGTGGACCGGGAGGAGGG-CGGGA
10395301 GGACCTGGTGGACCGGGAGGATGGG-GAGGA
1 GGACCTGGTGGACCGGGAGGA-GGGCG-GGA
10395331 GGACCTGGTGG
1 GGACCTGGTGG
10395342 TTGGGGTCCT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
29 1 0.03
30 33 0.89
31 3 0.08
ACGTcount: A:0.17, C:0.17, G:0.58, T:0.08
Consensus pattern (29 bp):
GGACCTGGTGGACCGGGAGGAGGGCGGGA
Found at i:10398054 original size:9 final size:9
Alignment explanation
Indices: 10398035--10398089 Score: 85
Period size: 9 Copynumber: 6.2 Consensus size: 9
10398025 TCGGGTATTT
10398035 TTCGG-TAA
1 TTCGGTTAA
10398043 TTCGGTTAA
1 TTCGGTTAA
10398052 TTCGGTTAA
1 TTCGGTTAA
10398061 TTCGGTTAA
1 TTCGGTTAA
*
10398070 TTCGGGTAA
1 TTCGGTTAA
*
10398079 TTCGGGTAA
1 TTCGGTTAA
10398088 TT
1 TT
10398090 TTTAACCAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
8 5 0.11
9 40 0.89
ACGTcount: A:0.22, C:0.11, G:0.25, T:0.42
Consensus pattern (9 bp):
TTCGGTTAA
Found at i:10398267 original size:12 final size:12
Alignment explanation
Indices: 10398250--10398274 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10398240 AGTAATTTCG
10398250 GGTCGGTTAACC
1 GGTCGGTTAACC
10398262 GGTCGGTTAACC
1 GGTCGGTTAACC
10398274 G
1 G
10398275 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:10400634 original size:2 final size:2
Alignment explanation
Indices: 10400627--10400663 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
10400617 TCAAACCTTT
10400627 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
10400664 TCAAAGCAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10407893 original size:37 final size:37
Alignment explanation
Indices: 10407836--10407921 Score: 145
Period size: 37 Copynumber: 2.3 Consensus size: 37
10407826 ATAAGTGACA
10407836 AGTGATAAGTGATAGCTTTAGCTACACTTATCTGATC
1 AGTGATAAGTGATAGCTTTAGCTACACTTATCTGATC
* * *
10407873 AGTGATAAGTGGTAGTTTTAGCTGCACTTATCTGATC
1 AGTGATAAGTGATAGCTTTAGCTACACTTATCTGATC
10407910 AGTGATAAGTGA
1 AGTGATAAGTGA
10407922 CAAGTGATAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (37 bp):
AGTGATAAGTGATAGCTTTAGCTACACTTATCTGATC
Found at i:10407931 original size:88 final size:86
Alignment explanation
Indices: 10407786--10407970 Score: 298
Period size: 88 Copynumber: 2.1 Consensus size: 86
10407776 ATCAGTGACA
*
10407786 AGTGATAAGTGGTAGTTTAGCTACACTTATCTGATCAGTGATAAGTGACAAGTGATAAGTGATAG
1 AGTGATAAGTGGTAGTTTAGCTACACTTATCTGATCAGTGATAAGTGACAAGTGATAAATGATA-
*
10407851 CTTTAGCTACACTTATCTGATC
65 CCTTAGCTACACTTATCTGATC
* *
10407873 AGTGATAAGTGGTAGTTTTAGCTGCACTTATCTGATCAGTGATAAGTGACAAGTGATAAATGGTA
1 AGTGATAAGTGGTAG-TTTAGCTACACTTATCTGATCAGTGATAAGTGACAAGTGATAAATGATA
10407938 CCTTAGCTACACTTATCTGATC
65 CCTTAGCTACACTTATCTGATC
* *
10407960 GGTGACAAGTG
1 AGTGATAAGTG
10407971 ACAAGTGATA
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
87 45 0.49
88 46 0.51
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.32
Consensus pattern (86 bp):
AGTGATAAGTGGTAGTTTAGCTACACTTATCTGATCAGTGATAAGTGACAAGTGATAAATGATAC
CTTAGCTACACTTATCTGATC
Found at i:10407953 original size:50 final size:50
Alignment explanation
Indices: 10407873--10408034 Score: 236
Period size: 50 Copynumber: 3.2 Consensus size: 50
10407863 TTATCTGATC
* **
10407873 AGTGATAAGTGGTAGTTTTAGCTGCACTTATCTGATCAGTGATAAGTGACA
1 AGTGATAAATGGTAGCCTTAGCTGCACTTATCTGATCAGTGA-AAGTGACA
* *
10407924 AGTGATAAATGGTA-CCTTAGCTACACTTATCTGATCGGTGACAAGTGACA
1 AGTGATAAATGGTAGCCTTAGCTGCACTTATCTGATCAGTGA-AAGTGACA
* *
10407974 AGTGATAAGTGGTAGCTTTAGCTGCACTTATCTGATCAGTGAAAGTGACA
1 AGTGATAAATGGTAGCCTTAGCTGCACTTATCTGATCAGTGAAAGTGACA
10408024 AGTGATAAATG
1 AGTGATAAATG
10408035 TGATCCATGT
Statistics
Matches: 99, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
50 62 0.63
51 37 0.37
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (50 bp):
AGTGATAAATGGTAGCCTTAGCTGCACTTATCTGATCAGTGAAAGTGACA
Found at i:10409684 original size:41 final size:40
Alignment explanation
Indices: 10409634--10409768 Score: 175
Period size: 41 Copynumber: 3.3 Consensus size: 40
10409624 GTAGGTATAT
* *
10409634 TGCCAGTGAATCAATTCAGGCTTAAAGCCTAGTAGGCTAAG
1 TGCCGGTGAATCAA-TCAGGCTTAAAGCCTAGCAGGCTAAG
*
10409675 TGCCGGTGAACTGAATCAGGC-TATAAGCCTAGCAGGCTAAG
1 TGCCGGTGAA-TCAATCAGGCTTA-AAGCCTAGCAGGCTAAG
*
10409716 TGCCGGTG-ATCTGAATCAGGCTTTAAGCCTAGCAGGCTAAG
1 TGCCGGTGAATC--AATCAGGCTTAAAGCCTAGCAGGCTAAG
10409757 TGCCGGTGAATC
1 TGCCGGTGAATC
10409769 TGTCTTATTT
Statistics
Matches: 83, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
39 1 0.01
40 3 0.04
41 72 0.87
42 7 0.08
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (40 bp):
TGCCGGTGAATCAATCAGGCTTAAAGCCTAGCAGGCTAAG
Found at i:10409979 original size:38 final size:38
Alignment explanation
Indices: 10409936--10410015 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 38
10409926 AATTGTTGGA
* *
10409936 TATATATATGTATGCATTCGACATATGTGAATT-ATAAG
1 TATATATATATATGCATTCGACACATGTG-ATTGATAAG
* * *
10409974 TATATATATATGTGCATTCGGCACATGTGGTTGATAAG
1 TATATATATATATGCATTCGACACATGTGATTGATAAG
10410012 TATA
1 TATA
10410016 ATTATTTGCT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 2 0.06
38 34 0.94
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.39
Consensus pattern (38 bp):
TATATATATATATGCATTCGACACATGTGATTGATAAG
Found at i:10412472 original size:23 final size:23
Alignment explanation
Indices: 10412440--10412483 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
10412430 GAACATTTAA
10412440 TCGGGAAGCTCA-TAAAGAGCCTC
1 TCGGGAAGCTCACT-AAGAGCCTC
*
10412463 TCGGGTAGCTCACTAAGAGCC
1 TCGGGAAGCTCACTAAGAGCC
10412484 ATGTAACGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.18
Consensus pattern (23 bp):
TCGGGAAGCTCACTAAGAGCCTC
Found at i:10434267 original size:27 final size:27
Alignment explanation
Indices: 10434221--10434351 Score: 93
Period size: 27 Copynumber: 4.9 Consensus size: 27
10434211 ATAGTCCGAC
* * * *
10434221 AGGACATTAAACACTAGATTTTTCAAT
1 AGGACGTTAAACACGAGATTGTCCAAT
* *
10434248 GGGACGTTAAACACGGGATTGTCCAAT
1 AGGACGTTAAACACGAGATTGTCCAAT
* * ** *
10434275 AGGACGTTAAATACGAGATAGTCTGAC
1 AGGACGTTAAACACGAGATTGTCCAAT
* * *
10434302 AAGACATTAAGCACG-GAATTGTCCAAT
1 AGGACGTTAAACACGAG-ATTGTCCAAT
* * *
10434329 AGAAGGTTAAACACGGGATTGTC
1 AGGACGTTAAACACGAGATTGTC
10434352 TGACGAGATG
Statistics
Matches: 76, Mismatches: 26, Indels: 4
0.72 0.25 0.04
Matches are distributed among these distances:
26 1 0.01
27 74 0.97
28 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (27 bp):
AGGACGTTAAACACGAGATTGTCCAAT
Found at i:10434364 original size:27 final size:27
Alignment explanation
Indices: 10434334--10434408 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
10434324 CCAATAGAAG
*
10434334 GTTAAACACGGGATTG-TCTGACGAGAT
1 GTTAAACACGGGATAGTTC-GACGAGAT
* * *
10434361 GTTAAACACAGGATAGTTCGATGGGAT
1 GTTAAACACGGGATAGTTCGACGAGAT
*
10434388 GTTAAATACGGGATAGTTCGA
1 GTTAAACACGGGATAGTTCGA
10434409 TGGGACTCTA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 39 0.95
28 2 0.05
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (27 bp):
GTTAAACACGGGATAGTTCGACGAGAT
Found at i:10434409 original size:27 final size:27
Alignment explanation
Indices: 10434358--10434413 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
10434348 TGTCTGACGA
10434358 GATGTTAAACACAGGATAGTTCGATGG
1 GATGTTAAACACAGGATAGTTCGATGG
* *
10434385 GATGTTAAATACGGGATAGTTCGATGG
1 GATGTTAAACACAGGATAGTTCGATGG
10434412 GA
1 GA
10434414 CTCTATACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.27
Consensus pattern (27 bp):
GATGTTAAACACAGGATAGTTCGATGG
Found at i:10443279 original size:20 final size:20
Alignment explanation
Indices: 10443248--10443299 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
10443238 TAAAAAGTTA
* *
10443248 AAAATGAATTATTTATAATTT
1 AAAAT-AATTATATAAAATTT
*
10443269 ATAATAATTATATAAAATTT
1 AAAATAATTATATAAAATTT
10443289 AAAATATATTA
1 AAAATA-ATTA
10443300 CAAAGTTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 18 0.69
21 8 0.31
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
AAAATAATTATATAAAATTT
Found at i:10443476 original size:27 final size:27
Alignment explanation
Indices: 10443442--10443513 Score: 76
Period size: 28 Copynumber: 2.7 Consensus size: 27
10443432 TATAATAAAT
*
10443442 AATTAATAT-AACTTATTATTTTAAAAA
1 AATTAATATAAAATT-TTATTTTAAAAA
*
10443469 AATTAATATCAAAATTTTATTTTAATAA
1 AATTAATAT-AAAATTTTATTTTAAAAA
* *
10443497 CATTAATA-ATAATTTTA
1 AATTAATATAAAATTTTA
10443514 AAATTTAAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
26 8 0.21
27 9 0.23
28 18 0.46
29 4 0.10
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (27 bp):
AATTAATATAAAATTTTATTTTAAAAA
Found at i:10444272 original size:19 final size:20
Alignment explanation
Indices: 10444230--10444272 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
10444220 TCATGCTTTC
*
10444230 TATTCACATTTTCATATTCA
1 TATTCACATTTTCAAATTCA
10444250 -ATTCACATTTTCAAATT-A
1 TATTCACATTTTCAAATTCA
10444268 TATTC
1 TATTC
10444273 CACAATCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTCACATTTTCAAATTCA
Found at i:10444453 original size:38 final size:37
Alignment explanation
Indices: 10444401--10444492 Score: 96
Period size: 38 Copynumber: 2.5 Consensus size: 37
10444391 ATCAGATTGG
* * *
10444401 CACCCAGTGCCTCATCGG-ATAGTTCGAAGCAAAGTTGA
1 CACCTAGTGTCTCATCGGCATAG-CCGAAGCAAAG-TGA
* *
10444439 CACCTAGTGTCTCATCGGCCTAGCCGAAGTAAAGTGA
1 CACCTAGTGTCTCATCGGCATAGCCGAAGCAAAGTGA
* *
10444476 TACCTAGTATCTCATCG
1 CACCTAGTGTCTCATCG
10444493 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
37 18 0.39
38 25 0.54
39 3 0.07
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (37 bp):
CACCTAGTGTCTCATCGGCATAGCCGAAGCAAAGTGA
Found at i:10444504 original size:38 final size:38
Alignment explanation
Indices: 10444425--10444535 Score: 107
Period size: 38 Copynumber: 2.9 Consensus size: 38
10444415 TCGGATAGTT
* * *
10444425 CGAAGCAAAGTTGACACCTAGTGTCTCATCGGCCTAGC
1 CGAAGTAAAGTTGACACCTAGTATCTCATCGACCTAGC
* * *
10444463 CGAAGTAAAG-TGATACCTAGTATCTCATCGAATCTATC
1 CGAAGTAAAGTTGACACCTAGTATCTCATCG-ACCTAGC
* * *
10444501 CGAAGTAAAATAGTGACACCCAGTGTCTCATCGAC
1 CGAAGTAAAGT--TGACACCTAGTATCTCATCGAC
10444536 TCAAGGTCGA
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
37 18 0.31
38 22 0.38
40 1 0.02
41 17 0.29
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (38 bp):
CGAAGTAAAGTTGACACCTAGTATCTCATCGACCTAGC
Found at i:10444530 original size:41 final size:38
Alignment explanation
Indices: 10444425--10444534 Score: 114
Period size: 41 Copynumber: 2.8 Consensus size: 38
10444415 TCGGATAGTT
* *
10444425 CGAAGCAAAGTTGACACCTAGTGTCTCATCG-GCCTAGC
1 CGAAGTAAAG-TGACACCTAGTGTCTCATCGAACCTAGC
* * * *
10444463 CGAAGTAAAGTGATACCTAGTATCTCATCGAATCTATC
1 CGAAGTAAAGTGACACCTAGTGTCTCATCGAACCTAGC
*
10444501 CGAAGTAAAATAGTGACACCCAGTGTCTCATCGA
1 CGAAGT--AA-AGTGACACCTAGTGTCTCATCGA
10444535 CTCAAGGTCG
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
37 18 0.31
38 19 0.32
40 2 0.03
41 20 0.34
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.24
Consensus pattern (38 bp):
CGAAGTAAAGTGACACCTAGTGTCTCATCGAACCTAGC
Found at i:10447747 original size:22 final size:24
Alignment explanation
Indices: 10447711--10447759 Score: 75
Period size: 22 Copynumber: 2.1 Consensus size: 24
10447701 AAAATTTTAA
10447711 TAATAATACAAATAATAATATGAT
1 TAATAATACAAATAATAATATGAT
*
10447735 TAATAA-A-AAATAATAATATTAT
1 TAATAATACAAATAATAATATGAT
10447757 TAA
1 TAA
10447760 ATTAATTGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 17 0.71
23 1 0.04
24 6 0.25
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (24 bp):
TAATAATACAAATAATAATATGAT
Found at i:10448450 original size:26 final size:26
Alignment explanation
Indices: 10448421--10448520 Score: 69
Period size: 26 Copynumber: 3.6 Consensus size: 26
10448411 GGAGGAAAAA
10448421 AATCGAAA-AGAAAAACTTAAGAACCG
1 AATC-AAAGAGAAAAACTTAAGAACCG
***
10448447 AATCAAAGAGAAAAAATCACCTTNAAGAAAAAA
1 AATCAAAGAG--AAAA--A-CTT-AAG-AACCG
*
10448480 AATCGAAA-AAAAAAACTTAAGAACCG
1 AATC-AAAGAGAAAAACTTAAGAACCG
10448506 AATCAAAGAGAAAAA
1 AATCAAAGAGAAAAA
10448521 AATTACCTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 20
0.67 0.10 0.24
Matches are distributed among these distances:
25 6 0.11
26 18 0.32
27 3 0.05
28 7 0.12
29 1 0.02
30 1 0.02
31 7 0.12
32 3 0.05
33 7 0.12
34 3 0.05
ACGTcount: A:0.63, C:0.13, G:0.12, T:0.11
Consensus pattern (26 bp):
AATCAAAGAGAAAAACTTAAGAACCG
Found at i:10448519 original size:31 final size:31
Alignment explanation
Indices: 10448425--10448522 Score: 96
Period size: 31 Copynumber: 3.3 Consensus size: 31
10448415 GAAAAAAATC
*
10448425 GAAAAGAAAAACTTAAGAACCGAATCAAAGA
1 GAAAAAAAAAACTTAAGAACCGAATCAAAGA
** * * **
10448456 GAAAAAATCACCTTNAAGAA---AA-AAAATC
1 GAAAAAAAAAACTT-AAGAACCGAATCAAAGA
10448484 GAAAAAAAAAACTTAAGAACCGAATCAAAGA
1 GAAAAAAAAAACTTAAGAACCGAATCAAAGA
10448515 GAAAAAAA
1 GAAAAAAA
10448523 TTACCTTTGT
Statistics
Matches: 49, Mismatches: 13, Indels: 10
0.68 0.18 0.14
Matches are distributed among these distances:
27 5 0.10
28 14 0.29
29 2 0.04
30 2 0.04
31 21 0.43
32 5 0.10
ACGTcount: A:0.64, C:0.12, G:0.12, T:0.10
Consensus pattern (31 bp):
GAAAAAAAAAACTTAAGAACCGAATCAAAGA
Found at i:10449859 original size:25 final size:25
Alignment explanation
Indices: 10449830--10449881 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
10449820 CCTATTTCTC
* *
10449830 CTTTCTTTCTT-TCCCTTTTTCTTTT
1 CTTTCTTT-TTCTCCCTGTTTCGTTT
10449855 CTTTCTTTTTCTCCCTGTTTCGTTT
1 CTTTCTTTTTCTCCCTGTTTCGTTT
10449880 CT
1 CT
10449882 ATTTTGTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.00, C:0.29, G:0.04, T:0.67
Consensus pattern (25 bp):
CTTTCTTTTTCTCCCTGTTTCGTTT
Found at i:10449864 original size:10 final size:10
Alignment explanation
Indices: 10449831--10449916 Score: 55
Period size: 10 Copynumber: 8.3 Consensus size: 10
10449821 CTATTTCTCC
10449831 TTTCTTTCTT
1 TTTCTTTCTT
** *
10449841 TCCCTTTTTCT
1 TTTCTTTCT-T
10449852 TTTCTTTCTT
1 TTTCTTTCTT
** *
10449862 TTTCTCCCTG
1 TTTCTTTCTT
10449872 TTTCGTTTCTAT
1 TTTC-TTTCT-T
*
10449884 TTTGTTTCTT
1 TTTCTTTCTT
* *
10449894 TCTATTTCTT
1 TTTCTTTCTT
*
10449904 TTTGTTTCTT
1 TTTCTTTCTT
10449914 TTT
1 TTT
10449917 ATGCTTTCAT
Statistics
Matches: 56, Mismatches: 17, Indels: 6
0.71 0.22 0.08
Matches are distributed among these distances:
10 38 0.68
11 15 0.27
12 3 0.05
ACGTcount: A:0.02, C:0.21, G:0.05, T:0.72
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:10449895 original size:15 final size:16
Alignment explanation
Indices: 10449870--10449900 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
10449860 TTTTTCTCCC
10449870 TGTTTCGTTTCTATTT
1 TGTTTCGTTTCTATTT
10449886 TGTTTC-TTTCTATTT
1 TGTTTCGTTTCTATTT
10449901 CTTTTTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.06, C:0.13, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTTTCGTTTCTATTT
Found at i:10450396 original size:9 final size:9
Alignment explanation
Indices: 10450382--10450406 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
10450372 AATTTATAAT
10450382 ATAATAACA
1 ATAATAACA
10450391 ATAATAACA
1 ATAATAACA
10450400 ATAATAA
1 ATAATAA
10450407 TATGTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (9 bp):
ATAATAACA
Found at i:10455139 original size:23 final size:26
Alignment explanation
Indices: 10455108--10455165 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 26
10455098 ATTAACTCTT
10455108 ATGAGCTTACC-GT-TTCAGCTC-GA
1 ATGAGCTTACCAGTCTTCAGCTCGGA
* *
10455131 TTGAGCTTACCATTCTTCAGCTCGGA
1 ATGAGCTTACCAGTCTTCAGCTCGGA
10455157 ATGAGCTTA
1 ATGAGCTTA
10455166 TCGATCATGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 10 0.34
24 1 0.03
25 8 0.28
26 10 0.34
ACGTcount: A:0.22, C:0.24, G:0.21, T:0.33
Consensus pattern (26 bp):
ATGAGCTTACCAGTCTTCAGCTCGGA
Found at i:10455751 original size:24 final size:24
Alignment explanation
Indices: 10455731--10455780 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
10455721 GCTAATAATA
10455731 AAATACATGTGTAATAAAATATAT
1 AAATACATGTGTAATAAAATATAT
* * * *
10455755 ACATACATTTGTAATAATATGTAT
1 AAATACATGTGTAATAAAATATAT
10455779 AA
1 AA
10455781 TTTACTTATT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.50, C:0.06, G:0.08, T:0.36
Consensus pattern (24 bp):
AAATACATGTGTAATAAAATATAT
Found at i:10455872 original size:16 final size:17
Alignment explanation
Indices: 10455851--10455882 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
10455841 TATATAACAA
10455851 AAGAAAGAAA-AGAAAT
1 AAGAAAGAAACAGAAAT
10455867 AAGAAAGAAACAGAAA
1 AAGAAAGAAACAGAAA
10455883 GCTTAAAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.75, C:0.03, G:0.19, T:0.03
Consensus pattern (17 bp):
AAGAAAGAAACAGAAAT
Found at i:10456882 original size:24 final size:22
Alignment explanation
Indices: 10456831--10456885 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
10456821 AGCACGACAA
10456831 TGCTCTCTGTTTAGCACATCTG
1 TGCTCTCTGTTTAGCACATCTG
*
10456853 TGCTCTCTGTTTAGCAC-TTTAG
1 TGCTCTCTGTTTAGCACATCT-G
10456875 TGCTCTCTGTT
1 TGCTCTCTGTT
10456886 CATTAGTGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 2 0.06
22 29 0.94
ACGTcount: A:0.11, C:0.25, G:0.18, T:0.45
Consensus pattern (22 bp):
TGCTCTCTGTTTAGCACATCTG
Found at i:10459076 original size:24 final size:24
Alignment explanation
Indices: 10459049--10459094 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
10459039 ATTGAAATGG
10459049 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
10459073 ATTGAATTTATATTGATTGAAT
1 ATTGAATTTATATTGATTGAAT
10459095 GGGTATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 3 0.15
24 12 0.60
25 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:10459375 original size:40 final size:40
Alignment explanation
Indices: 10459253--10459393 Score: 135
Period size: 40 Copynumber: 3.6 Consensus size: 40
10459243 CGATTTCGAG
* * *
10459253 CCGATGAGACATTGGGTGTCAATTTACTACTTCGGATTAAT
1 CCGATGAGACACTGGGTGTCAAATTATTACTTCGGATT-AT
* * * * * * *
10459294 TCAATGAGGCACTGGGTG-CCAA-T-TTACTTTGGTTTAG
1 CCGATGAGACACTGGGTGTCAAATTATTACTTCGGATTAT
*
10459331 CCGATGAGACACTGGGTGTCAAATTATTACTTCGAATTAT
1 CCGATGAGACACTGGGTGTCAAATTATTACTTCGGATTAT
* *
10459371 CCGATGAGGCACTGGGTGCCAAA
1 CCGATGAGACACTGGGTGTCAAA
10459394 CTGGTGCGTT
Statistics
Matches: 77, Mismatches: 20, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
37 16 0.21
38 12 0.16
39 2 0.03
40 33 0.43
41 14 0.18
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (40 bp):
CCGATGAGACACTGGGTGTCAAATTATTACTTCGGATTAT
Found at i:10459594 original size:11 final size:12
Alignment explanation
Indices: 10459580--10459623 Score: 54
Period size: 11 Copynumber: 3.7 Consensus size: 12
10459570 TTATATACTC
10459580 ATGAAATGAAT-
1 ATGAAATGAATA
10459591 ATGAAATGAATA
1 ATGAAATGAATA
**
10459603 ATGAAATTGTGTA
1 ATGAAA-TGAATA
10459616 ATGAAATG
1 ATGAAATG
10459624 TGAAATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 11 0.38
12 8 0.28
13 10 0.34
ACGTcount: A:0.50, C:0.00, G:0.20, T:0.30
Consensus pattern (12 bp):
ATGAAATGAATA
Found at i:10459637 original size:12 final size:13
Alignment explanation
Indices: 10459602--10459640 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 13
10459592 TGAAATGAAT
*
10459602 AATGAAATTGTGT
1 AATGAAATTGTGA
10459615 AATGAAA-TGTGA
1 AATGAAATTGTGA
10459627 AAT-AAATTGTGA
1 AATGAAATTGTGA
10459639 AA
1 AA
10459641 ATTTATTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 3 0.12
12 14 0.58
13 7 0.29
ACGTcount: A:0.49, C:0.00, G:0.21, T:0.31
Consensus pattern (13 bp):
AATGAAATTGTGA
Found at i:10467712 original size:8 final size:8
Alignment explanation
Indices: 10467699--10467728 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
10467689 CATCATATCC
10467699 TTCATGTT
1 TTCATGTT
10467707 TTCATGTT
1 TTCATGTT
10467715 TTCATGTT
1 TTCATGTT
10467723 TTCATG
1 TTCATG
10467729 CTTTATTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.60
Consensus pattern (8 bp):
TTCATGTT
Found at i:10474410 original size:22 final size:23
Alignment explanation
Indices: 10474385--10474429 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
10474375 ATTAAGCTAT
*
10474385 TTAAAAGTTTTT-AATTTTTGAA
1 TTAAAACTTTTTAAATTTTTGAA
*
10474407 TTAAATCTTTTTAAATTTTTGAA
1 TTAAAACTTTTTAAATTTTTGAA
10474430 AATTTAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.56
Consensus pattern (23 bp):
TTAAAACTTTTTAAATTTTTGAA
Found at i:10481284 original size:16 final size:15
Alignment explanation
Indices: 10481258--10481301 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
10481248 TGGTAGGGTG
10481258 AAGAG-AAAATTAGA
1 AAGAGAAAAATTAGA
10481272 AAGATGAAAAATTAG-
1 AAGA-GAAAAATTAGA
*
10481287 AAGAGAAAAAATAGA
1 AAGAGAAAAATTAGA
10481302 TTTTCCATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 13 0.50
15 5 0.19
16 8 0.31
ACGTcount: A:0.66, C:0.00, G:0.20, T:0.14
Consensus pattern (15 bp):
AAGAGAAAAATTAGA
Found at i:10489445 original size:11 final size:10
Alignment explanation
Indices: 10489429--10489472 Score: 61
Period size: 10 Copynumber: 4.2 Consensus size: 10
10489419 ATGAATTTAT
10489429 AAAAATGATAA
1 AAAAAT-ATAA
10489440 AAAAATATAA
1 AAAAATATAA
10489450 AAAAACTATAA
1 AAAAA-TATAA
*
10489461 AAAATTATAA
1 AAAAATATAA
10489471 AA
1 AA
10489473 TTAATAAAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
10 16 0.52
11 15 0.48
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.20
Consensus pattern (10 bp):
AAAAATATAA
Found at i:10489479 original size:19 final size:18
Alignment explanation
Indices: 10489451--10489568 Score: 64
Period size: 20 Copynumber: 6.2 Consensus size: 18
10489441 AAAATATAAA
*
10489451 AAAACTATAAAAAATTAT
1 AAAATTATAAAAAATTAT
10489469 AAAATTAATAAAACATATT-T
1 AAAATT-ATAAAA-A-ATTAT
*
10489489 AAATTTTTATAAAAAAATT-T
1 AAA--ATTAT-AAAAAATTAT
*
10489509 AAAATCCTAT-AAAAATCAT
1 AAAAT--TATAAAAAATTAT
*
10489528 AAAATTAT-AAAAAGTATT
1 AAAATTATAAAAAATTA-T
* *
10489546 AAAATTGATATAAACTTAT
1 AAAATT-ATAAAAAATTAT
10489565 AAAA
1 AAAA
10489569 AAATCATAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 23
0.71 0.08 0.21
Matches are distributed among these distances:
17 9 0.11
18 19 0.24
19 19 0.24
20 20 0.25
21 6 0.08
22 6 0.08
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (18 bp):
AAAATTATAAAAAATTAT
Found at i:10489491 original size:20 final size:19
Alignment explanation
Indices: 10489436--10489513 Score: 59
Period size: 20 Copynumber: 3.9 Consensus size: 19
10489426 TATAAAAATG
* *
10489436 ATAAAAAAATATAAAA-AA
1 ATAAAAAAATTTAAAATTA
10489454 ACTATAAAAAATTATAAAATTA
1 A-TA-AAAAAATT-TAAAATTA
* * *
10489476 ATAAAACATATTTAAATTTTT
1 ATAAAA-AAATTTAAA-ATTA
10489497 ATAAAAAAATTTAAAAT
1 ATAAAAAAATTTAAAAT
10489514 CCTATAAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
18 1 0.02
19 3 0.06
20 22 0.47
21 19 0.40
22 2 0.04
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (19 bp):
ATAAAAAAATTTAAAATTA
Found at i:10490040 original size:10 final size:9
Alignment explanation
Indices: 10490001--10490052 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
10489991 TTATAAGTTC
*
10490001 AATTTTAAT
1 AATTTTTAT
10490010 -ATTTTTAT
1 AATTTTTAT
10490018 AATTTTTAT
1 AATTTTTAT
*
10490027 AATTCTTTAC
1 AATT-TTTAT
10490037 AATTTTT-T
1 AATTTTTAT
*
10490045 TATTTTTA
1 AATTTTTA
10490053 AGAATTCTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
8 13 0.36
9 15 0.42
10 8 0.22
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (9 bp):
AATTTTTAT
Found at i:10490040 original size:19 final size:17
Alignment explanation
Indices: 10490000--10490052 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
10489990 TTTATAAGTT
*
10490000 CAATTTTAATATTTTTA
1 CAATTTTTATATTTTTA
*
10490017 TAATTTTTATAATTCTTTA
1 CAATTTTTAT-ATT-TTTA
*
10490036 CAATTTTTTTATTTTTA
1 CAATTTTTATATTTTTA
10490053 AGAATTCTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 12 0.40
18 6 0.20
19 12 0.40
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (17 bp):
CAATTTTTATATTTTTA
Found at i:10510539 original size:17 final size:18
Alignment explanation
Indices: 10510508--10510546 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
10510498 TATTATATTT
*
10510508 TAAAAAATTATTTTTAAA
1 TAAAAAATTAATTTTAAA
10510526 TAAAAAA-TAATTTTAAA
1 TAAAAAATTAATTTTAAA
10510543 -AAAA
1 TAAAA
10510547 TCAAATATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 9 0.45
18 7 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
TAAAAAATTAATTTTAAA
Found at i:10517180 original size:4 final size:4
Alignment explanation
Indices: 10517171--10517195 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
10517161 TAAATTTTTT
10517171 TAAA TAAA TAAA TAAA TAAA TAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA T
10517196 GGTACCGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
TAAA
Found at i:10537049 original size:12 final size:13
Alignment explanation
Indices: 10537026--10537054 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
10537016 TATAGCATAA
10537026 AAATATAATAAAT
1 AAATATAATAAAT
10537039 AAATA-AATAAAT
1 AAATATAATAAAT
10537051 AAAT
1 AAAT
10537055 TTTTCCTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATATAATAAAT
Found at i:10543547 original size:46 final size:46
Alignment explanation
Indices: 10543490--10543672 Score: 294
Period size: 46 Copynumber: 4.0 Consensus size: 46
10543480 ACAATGCTAT
* * *
10543490 AACTCAGTATGGTTTCCTTCACTGGAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
*
10543536 AACACAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* *
10543582 AACTCTGTATGGTTTTCTTCACTGAAACACCATATCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* *
10543628 AACTTAGTATGGCTTTCTTCACTGAAACACCATACCTACTTTTCA
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCA
10543673 AAATTTTTCC
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 126 1.00
ACGTcount: A:0.28, C:0.27, G:0.09, T:0.36
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:10544448 original size:17 final size:17
Alignment explanation
Indices: 10544418--10544465 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
10544408 AAATTCTTTT
*
10544418 TAAATTACAAAATTCAC
1 TAAATCACAAAATTCAC
*
10544435 TAAATCACAGAATTCAC
1 TAAATCACAAAATTCAC
*
10544452 TAATTCA-AAAATTC
1 TAAATCACAAAATTC
10544466 TTCTAAATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
16 6 0.22
17 21 0.78
ACGTcount: A:0.50, C:0.19, G:0.02, T:0.29
Consensus pattern (17 bp):
TAAATCACAAAATTCAC
Found at i:10547852 original size:20 final size:20
Alignment explanation
Indices: 10547827--10547864 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
10547817 AAAGGTTAAC
10547827 TTAGTAAAATAATAATAATG
1 TTAGTAAAATAATAATAATG
* *
10547847 TTAGTATAATGATAATAA
1 TTAGTAAAATAATAATAA
10547865 AATAAAACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.37
Consensus pattern (20 bp):
TTAGTAAAATAATAATAATG
Found at i:10548803 original size:41 final size:41
Alignment explanation
Indices: 10548725--10548823 Score: 139
Period size: 41 Copynumber: 2.4 Consensus size: 41
10548715 CTATATGATT
* * *
10548725 AGCACTAAGTGTGCG-AATTAAATGATGAGGTTGAATAACG
1 AGCACTAGGTGTGCGAAATTAAATAATGAGGTTAAATAACG
*
10548765 AGCACTAGGTGTGCGAAATTAAATAATGATGTTAAATAACG
1 AGCACTAGGTGTGCGAAATTAAATAATGAGGTTAAATAACG
10548806 AGCACT-GAGTGTGCGAAA
1 AGCACTAG-GTGTGCGAAA
10548824 CCGAGATCAA
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
40 15 0.28
41 38 0.72
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.24
Consensus pattern (41 bp):
AGCACTAGGTGTGCGAAATTAAATAATGAGGTTAAATAACG
Found at i:10557587 original size:15 final size:15
Alignment explanation
Indices: 10557567--10557601 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
10557557 TGTTAATCAG
10557567 TATTAATCAGTATGT
1 TATTAATCAGTATGT
10557582 TATTAATCAGTATGT
1 TATTAATCAGTATGT
10557597 TATTA
1 TATTA
10557602 GAATAGTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.49
Consensus pattern (15 bp):
TATTAATCAGTATGT
Found at i:10581414 original size:6 final size:6
Alignment explanation
Indices: 10581403--10581432 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
10581393 CAAACAACCG
*
10581403 CCTTCT CCTTCT CCTTCT GCTTCT CCTTCT
1 CCTTCT CCTTCT CCTTCT CCTTCT CCTTCT
10581433 TCTACTCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (6 bp):
CCTTCT
Found at i:10585163 original size:23 final size:23
Alignment explanation
Indices: 10585137--10585232 Score: 167
Period size: 23 Copynumber: 4.2 Consensus size: 23
10585127 AGTGCCACAT
10585137 TGATATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
10585160 TGATATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
10585183 TGATATGTAGCC-ATAGCTACCAC
1 TGATATGTAGCCGA-AGCTACCAC
*
10585206 TGAAATGTAGCCGAAGCTACCAC
1 TGATATGTAGCCGAAGCTACCAC
10585229 TGAT
1 TGAT
10585233 CAATAACACT
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
22 1 0.01
23 67 0.97
24 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (23 bp):
TGATATGTAGCCGAAGCTACCAC
Found at i:10585484 original size:18 final size:17
Alignment explanation
Indices: 10585458--10585496 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
10585448 ATTTTCCTTC
10585458 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
10585475 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
10585493 CACA
1 CACA
10585497 ATTTATACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:10593187 original size:16 final size:16
Alignment explanation
Indices: 10593168--10593199 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
10593158 AATAATATTG
10593168 TAAAGAAAAAAGATGA
1 TAAAGAAAAAAGATGA
*
10593184 TAAAGAAAGAAGATGA
1 TAAAGAAAAAAGATGA
10593200 GATAAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.22, T:0.12
Consensus pattern (16 bp):
TAAAGAAAAAAGATGA
Found at i:10608953 original size:39 final size:39
Alignment explanation
Indices: 10608899--10608978 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
10608889 AAGGTTTGAC
* *
10608899 ATTCCTGCTTTTATGGATACAATATAAATTCAATAACAA
1 ATTCCTGCTTTTATGGAAACAATAAAAATTCAATAACAA
10608938 ATTCCTGCTTTTATGGAAACAATAAAAATTCAATAACAA
1 ATTCCTGCTTTTATGGAAACAATAAAAATTCAATAACAA
10608977 AT
1 AT
10608979 AACTCATAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.34
Consensus pattern (39 bp):
ATTCCTGCTTTTATGGAAACAATAAAAATTCAATAACAA
Done.