Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 4 of 153
Found at i:1032517 original size:13 final size:13
Alignment explanation
Indices: 1032499--1032524 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1032489 TGAGCCTGCT
1032499 CTGAAAAGACCCG
1 CTGAAAAGACCCG
1032512 CTGAAAAGACCCG
1 CTGAAAAGACCCG
1032525 GACTAAAACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.23, T:0.08
Consensus pattern (13 bp):
CTGAAAAGACCCG
Found at i:1034860 original size:21 final size:20
Alignment explanation
Indices: 1034821--1034860 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
1034811 AAATAATCAG
*
1034821 CAAATATTAGTAATAAATTA
1 CAAATATTACTAATAAATTA
*
1034841 CAAATATTAACTAATTAATT
1 CAAATATT-ACTAATAAATT
1034861 TTAATTGGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.38
Consensus pattern (20 bp):
CAAATATTACTAATAAATTA
Found at i:1038105 original size:246 final size:246
Alignment explanation
Indices: 1037665--1038164 Score: 991
Period size: 246 Copynumber: 2.0 Consensus size: 246
1037655 CTGTTGAAGT
1037665 TTTTTCTTCATCAGATTGTTTCTTAAATAATTCTGTGTTTTCAGAATTACTTGAACTGCTACTAT
1 TTTTT-TTCATCAGATTGTTTCTTAAATAATTCTGTGTTTTCAGAATTACTTGAACTGCTACTAT
1037730 CATCATATTTTAACATATAATGATAATTAAACAGACTAAATAGATCTTTATGTTTTTCATAAAGT
65 CATCATATTTTAACATATAATGATAATTAAACAGACTAAATAGATCTTTATGTTTTTCATAAAGT
1037795 TCTTCTATTAGTTTTAAGTATTCAACTCTTTCTAGTTGATCATTACTATTAGAAAATTTTTCTTT
130 TCTTCTATTAGTTTTAAGTATTCAACTCTTTCTAGTTGATCATTACTATTAGAAAATTTTTCTTT
1037860 CCAATGTTCTATAAGAGTTTTATAGGATTGGAAATCATATTCTTTTTGTTTA
195 CCAATGTTCTATAAGAGTTTTATAGGATTGGAAATCATATTCTTTTTGTTTA
1037912 TTTTTTTCATCAGATTGTTTCTTAAATAATTCTGTGTTTTCAGAATTACTTGAACTGCTACTATC
1 TTTTTTTCATCAGATTGTTTCTTAAATAATTCTGTGTTTTCAGAATTACTTGAACTGCTACTATC
1037977 ATCATATTTTAACATATAATGATAATTAAACAGACTAAATAGATCTTTATGTTTTTCATAAAGTT
66 ATCATATTTTAACATATAATGATAATTAAACAGACTAAATAGATCTTTATGTTTTTCATAAAGTT
1038042 CTTCTATTAGTTTTAAGTATTCAACTCTTTCTAGTTGATCATTACTATTAGAAAATTTTTCTTTC
131 CTTCTATTAGTTTTAAGTATTCAACTCTTTCTAGTTGATCATTACTATTAGAAAATTTTTCTTTC
1038107 CAATGTTCTATAAGAGTTTTATAGGATTGGAAATCATATTCTTTTTGTTTA
196 CAATGTTCTATAAGAGTTTTATAGGATTGGAAATCATATTCTTTTTGTTTA
1038158 TTTTTTT
1 TTTTTTT
1038165 TACGTTTTTT
Statistics
Matches: 253, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
246 248 0.98
247 5 0.02
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.48
Consensus pattern (246 bp):
TTTTTTTCATCAGATTGTTTCTTAAATAATTCTGTGTTTTCAGAATTACTTGAACTGCTACTATC
ATCATATTTTAACATATAATGATAATTAAACAGACTAAATAGATCTTTATGTTTTTCATAAAGTT
CTTCTATTAGTTTTAAGTATTCAACTCTTTCTAGTTGATCATTACTATTAGAAAATTTTTCTTTC
CAATGTTCTATAAGAGTTTTATAGGATTGGAAATCATATTCTTTTTGTTTA
Found at i:1050465 original size:20 final size:20
Alignment explanation
Indices: 1050440--1050480 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
1050430 TATATAATTT
1050440 TTTATTTTTCTCTCATTTTC
1 TTTATTTTTCTCTCATTTTC
* *
1050460 TTTATTTTTTTCTTATTTTC
1 TTTATTTTTCTCTCATTTTC
1050480 T
1 T
1050481 CAATCTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTATTTTTCTCTCATTTTC
Found at i:1054025 original size:3 final size:3
Alignment explanation
Indices: 1054017--1054065 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
1054007 TTGCTTTTCA
1054017 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1054065 T
1 T
1054066 CACTGTTAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:1056908 original size:15 final size:15
Alignment explanation
Indices: 1056888--1056941 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
1056878 ATACTACAAA
1056888 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
1056903 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
1056920 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
1056937 ATATT
1 ATATT
1056942 AATATTGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:1056926 original size:34 final size:32
Alignment explanation
Indices: 1056886--1056953 Score: 100
Period size: 34 Copynumber: 2.1 Consensus size: 32
1056876 TTATACTACA
* *
1056886 AAATATTTATTATTAATATATTTATAATTGTAAT
1 AAATATTTATTATTAAAATATTAAT-ATTG-AAT
1056920 AAATATTTATTATTAAAATATTAATATTGAAT
1 AAATATTTATTATTAAAATATTAATATTGAAT
1056952 AA
1 AA
1056954 TTTCAATGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 5 0.16
33 4 0.12
34 23 0.72
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (32 bp):
AAATATTTATTATTAAAATATTAATATTGAAT
Found at i:1058774 original size:29 final size:29
Alignment explanation
Indices: 1058739--1058863 Score: 110
Period size: 29 Copynumber: 4.3 Consensus size: 29
1058729 GTAATCCAGC
1058739 CCATGTGGC-CTACATGGCCTGACACACGA
1 CCATGTGGCTC-ACATGGCCTGACACACGA
* *
1058768 CCATGTGACTCACATGGCCTGGCACACGA
1 CCATGTGGCTCACATGGCCTGACACACGA
* *
1058797 CCGTGTGGCTCACATGGTCC-GGCACACGA
1 CCATGTGGCTCACATGG-CCTGACACACGA
*** * * * *
1058826 TTGTGTGGCTCACCTGGTCTGGCACATGA
1 CCATGTGGCTCACATGGCCTGACACACGA
*
1058855 CCGTGTGGC
1 CCATGTGGC
1058864 ATCAATAGTG
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
28 1 0.01
29 78 0.95
30 3 0.04
ACGTcount: A:0.18, C:0.32, G:0.29, T:0.21
Consensus pattern (29 bp):
CCATGTGGCTCACATGGCCTGACACACGA
Found at i:1060117 original size:6 final size:6
Alignment explanation
Indices: 1060106--1060136 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
1060096 TAAATATTTT
1060106 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA T
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA T
1060137 TATTATCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:1069575 original size:30 final size:30
Alignment explanation
Indices: 1069541--1069613 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
1069531 TAATATCAGT
*** *
1069541 TTGTGTGAGCAATTTTGTTATAATGTAAGC
1 TTGTGTGAGCAACCCTGATATAATGTAAGC
* *
1069571 TTGTGTGAGCAACCCTGATATATTGTCAGC
1 TTGTGTGAGCAACCCTGATATAATGTAAGC
1069601 TTGTGTGAGCAAC
1 TTGTGTGAGCAAC
1069614 TTATTCTCGT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.37
Consensus pattern (30 bp):
TTGTGTGAGCAACCCTGATATAATGTAAGC
Found at i:1073724 original size:19 final size:20
Alignment explanation
Indices: 1073700--1073737 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1073690 TTGCATGTTT
1073700 CTGAAAAT-CTAAGTTTAAG
1 CTGAAAATGCTAAGTTTAAG
*
1073719 CTGAAAATGCTGAGTTTAA
1 CTGAAAATGCTAAGTTTAA
1073738 CTTATGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (20 bp):
CTGAAAATGCTAAGTTTAAG
Found at i:1076890 original size:45 final size:45
Alignment explanation
Indices: 1076841--1076950 Score: 121
Period size: 45 Copynumber: 2.4 Consensus size: 45
1076831 CCTATTTACA
* * * *
1076841 ATGATGCGATTGCGTCTTTCAACCATGGTCTTACTCACTTCCATC
1 ATGATGCCATAGCGTCTTTCAACCATGGGCTTACACACTTCCATC
* ** *
1076886 ATGATTCCATAGCGTCTTTCGGCTATGGGCTTACACACTTCCATC
1 ATGATGCCATAGCGTCTTTCAACCATGGGCTTACACACTTCCATC
* **
1076931 CTGATGCCATAATGTCTTTC
1 ATGATGCCATAGCGTCTTTC
1076951 GGCTATGGTC
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.35
Consensus pattern (45 bp):
ATGATGCCATAGCGTCTTTCAACCATGGGCTTACACACTTCCATC
Found at i:1076951 original size:45 final size:45
Alignment explanation
Indices: 1076865--1076964 Score: 146
Period size: 45 Copynumber: 2.2 Consensus size: 45
1076855 TCTTTCAACC
* * *
1076865 ATGGTCTTACTCACTTCCATCATGATTCCATAGCGTCTTTCGGCT
1 ATGGTCTTACACACTTCCATCATGATGCCATAACGTCTTTCGGCT
* * *
1076910 ATGGGCTTACACACTTCCATCCTGATGCCATAATGTCTTTCGGCT
1 ATGGTCTTACACACTTCCATCATGATGCCATAACGTCTTTCGGCT
1076955 ATGGTCTTAC
1 ATGGTCTTAC
1076965 TTGTTTTTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (45 bp):
ATGGTCTTACACACTTCCATCATGATGCCATAACGTCTTTCGGCT
Found at i:1077023 original size:45 final size:45
Alignment explanation
Indices: 1076854--1077025 Score: 125
Period size: 45 Copynumber: 3.8 Consensus size: 45
1076844 ATGCGATTGC
* * * * *
1076854 GTCTTTCAACCATGGTCTTACTCACTTCCATCATGATT-CCAT-AG
1 GTCTTTCAGCTATGGTCTTACTAATTTCTATCATG-TTGCCATAAG
* * * * * * *
1076898 CGTCTTTCGGCTATGGGCTTAC-ACACTTCCATCCTGATGCCATAAT
1 -GTCTTTCAGCTATGGTCTTACTA-ATTTCTATCATGTTGCCATAAG
* ** *
1076944 GTCTTTCGGCTATGGTCTTACTTGTTTTTATCATGTTGCCATAAG
1 GTCTTTCAGCTATGGTCTTACTAATTTCTATCATGTTGCCATAAG
* * *
1076989 GTTTTTCAGCTATGGTCTTCCTAATTTCTGTCATGTT
1 GTCTTTCAGCTATGGTCTTACTAATTTCTATCATGTT
1077026 TACAATAACA
Statistics
Matches: 99, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
44 1 0.01
45 97 0.98
46 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.41
Consensus pattern (45 bp):
GTCTTTCAGCTATGGTCTTACTAATTTCTATCATGTTGCCATAAG
Found at i:1098376 original size:35 final size:35
Alignment explanation
Indices: 1098295--1098376 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 35
1098285 TAATAAACAC
1098295 AAAAAA-ATATTTTAAAAATAAAAAATAAAAATATT
1 AAAAAAGATATTTTAAAAATAAAAAATAAAAATA-T
*** *
1098330 TTTAAAG-TATTTTAAAATTAAAAAATAAAAATA-
1 AAAAAAGATATTTTAAAAATAAAAAATAAAAATAT
1098363 AAAAATAGATATTT
1 AAAAA-AGATATTT
1098377 ATTATATTCG
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
33 2 0.05
34 2 0.05
35 33 0.89
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (35 bp):
AAAAAAGATATTTTAAAAATAAAAAATAAAAATAT
Found at i:1102130 original size:26 final size:26
Alignment explanation
Indices: 1102097--1102333 Score: 280
Period size: 26 Copynumber: 9.1 Consensus size: 26
1102087 GAGCTGCCAG
1102097 TTCAGTAATTTACCCATCGAGGGTAT
1 TTCAGTAATTTACCCATCGAGGGTAT
**
1102123 TTTGGTAATTTACCCATCGAGGGTAT
1 TTCAGTAATTTACCCATCGAGGGTAT
* *
1102149 TTCAATAATTTACCCATTGAGGGTAT
1 TTCAGTAATTTACCCATCGAGGGTAT
* *
1102175 TTCAGTAATTTACCCTTTGAGGGTAT
1 TTCAGTAATTTACCCATCGAGGGTAT
*
1102201 TTTAGTAATTTACCCATCGAGGGTAT
1 TTCAGTAATTTACCCATCGAGGGTAT
* *
1102227 TTCGGTAATTTACCCTTCGAGGGTAT
1 TTCAGTAATTTACCCATCGAGGGTAT
* * * *
1102253 TTCGGCAATGTACCCTTTC-AGGGTAT
1 TTCAGTAATTTACCC-ATCGAGGGTAT
* * *
1102279 TTTAGTAATTTATCCATCGAGTGTAT
1 TTCAGTAATTTACCCATCGAGGGTAT
* *
1102305 TT-TGATAATTTACCCATCAAGGGTAT
1 TTCAG-TAATTTACCCATCGAGGGTAT
1102331 TTC
1 TTC
1102334 GGTTGTGACA
Statistics
Matches: 180, Mismatches: 27, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
25 3 0.02
26 174 0.97
27 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (26 bp):
TTCAGTAATTTACCCATCGAGGGTAT
Found at i:1102226 original size:78 final size:78
Alignment explanation
Indices: 1102097--1102333 Score: 332
Period size: 78 Copynumber: 3.0 Consensus size: 78
1102087 GAGCTGCCAG
* * * *
1102097 TTCAGTAATTTACCCATCGAGGGTATTTTGGTAATTTACCCATCGAGGGTATTTCAATAATTTAC
1 TTCAGTAATTTACCCTTTGAGGGTATTTTAGTAATTTACCCATCGAGGGTATTTCGATAATTTAC
1102162 CCATTGAGGGTAT
66 CCATTGAGGGTAT
*
1102175 TTCAGTAATTTACCCTTTGAGGGTATTTTAGTAATTTACCCATCGAGGGTATTTCGGTAATTTAC
1 TTCAGTAATTTACCCTTTGAGGGTATTTTAGTAATTTACCCATCGAGGGTATTTCGATAATTTAC
1102240 CC-TTCGAGGGTAT
66 CCATT-GAGGGTAT
* * * * * * *
1102253 TTCGGCAATGTACCCTTTCAGGGTATTTTAGTAATTTATCCATCGAGTGTATTTTGATAATTTAC
1 TTCAGTAATTTACCCTTTGAGGGTATTTTAGTAATTTACCCATCGAGGGTATTTCGATAATTTAC
**
1102318 CCATCAAGGGTAT
66 CCATTGAGGGTAT
1102331 TTC
1 TTC
1102334 GGTTGTGACA
Statistics
Matches: 142, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
77 2 0.01
78 139 0.98
79 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (78 bp):
TTCAGTAATTTACCCTTTGAGGGTATTTTAGTAATTTACCCATCGAGGGTATTTCGATAATTTAC
CCATTGAGGGTAT
Found at i:1104754 original size:40 final size:40
Alignment explanation
Indices: 1104699--1105286 Score: 1176
Period size: 40 Copynumber: 14.7 Consensus size: 40
1104689 GAGCATTGGA
1104699 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1104739 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1104779 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1104819 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1104859 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1104899 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1104939 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1104979 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1105019 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1105059 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1105099 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1105139 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1105179 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1105219 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1105259 ATATATCCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
1105287 ATGTGTTTGC
Statistics
Matches: 548, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 548 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:1112980 original size:26 final size:26
Alignment explanation
Indices: 1112939--1113058 Score: 152
Period size: 26 Copynumber: 4.6 Consensus size: 26
1112929 GATATTTGAA
* *
1112939 GTATTTTGGTAATTTACCCATCGAGG
1 GTATTTCGATAATTTACCCATCGAGG
*
1112965 GTATTTCGATACTTTACCCATCGAGG
1 GTATTTCGATAATTTACCCATCGAGG
* *
1112991 GTAATTT-GGTAATTTATCCATCGAGG
1 GT-ATTTCGATAATTTACCCATCGAGG
* *
1113017 GTATTTTGGTAATTTACCCATCGAGG
1 GTATTTCGATAATTTACCCATCGAGG
*
1113043 GCATTTCGATAATTTA
1 GTATTTCGATAATTTA
1113059 GACCTATTTC
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
25 4 0.05
26 74 0.90
27 4 0.05
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (26 bp):
GTATTTCGATAATTTACCCATCGAGG
Found at i:1118103 original size:27 final size:27
Alignment explanation
Indices: 1118072--1118249 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
1118062 TAAATTGTAC
1118072 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
1118099 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
1118125 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
1118153 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
1118181 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
1118208 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
1118235 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
1118250 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:1118186 original size:82 final size:81
Alignment explanation
Indices: 1118073--1118228 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
1118063 AAATTGTACA
* *
1118073 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
1118137 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
1118154 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
1118219 TGCGAGTTGA
65 TGCGAATTGA
1118229 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:1118240 original size:82 final size:81
Alignment explanation
Indices: 1118069--1118249 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
1118059 GATTAAATTG
* *
1118069 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
1118134 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
1118150 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
1118214 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
1118232 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
1118250 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:1126166 original size:27 final size:27
Alignment explanation
Indices: 1126135--1126312 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
1126125 TAAATTGTAC
1126135 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
1126162 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
1126188 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
1126216 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
1126244 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
1126271 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
1126298 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
1126313 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:1126249 original size:82 final size:81
Alignment explanation
Indices: 1126136--1126291 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
1126126 AAATTGTACA
* *
1126136 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
1126200 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
1126217 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
1126282 TGCGAGTTGA
65 TGCGAATTGA
1126292 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:1126303 original size:82 final size:81
Alignment explanation
Indices: 1126132--1126312 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
1126122 GATTAAATTG
* *
1126132 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
1126197 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
1126213 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
1126277 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
1126295 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
1126313 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:1127749 original size:56 final size:54
Alignment explanation
Indices: 1127663--1127809 Score: 170
Period size: 56 Copynumber: 2.6 Consensus size: 54
1127653 GGGTGTTACA
* **
1127663 CCATGTCCCAGACATGGTCTTATATGGGACCTCTT-ATCTCGGTGCTAATGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTTAATCTCAATG---ATGCCAACG
* *
1127719 CCATGTCCCAAACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCT--TAATCTCAATGATGCCAACG
* * *
1127775 CCATGTCCCAGACATGGTCTAACATGAGATCTCTT
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTT
1127810 TACTCAAATG
Statistics
Matches: 79, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
54 1 0.01
56 70 0.89
58 1 0.01
59 7 0.09
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (54 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTTAATCTCAATGATGCCAACG
Found at i:1133898 original size:18 final size:18
Alignment explanation
Indices: 1133875--1133909 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
1133865 TAAAAATATG
1133875 TGTTTGTCT-TGAAAACAA
1 TGTTTGT-TATGAAAACAA
1133893 TGTTTGTTATGAAAACA
1 TGTTTGTTATGAAAACA
1133910 TATTTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.06
18 15 0.94
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (18 bp):
TGTTTGTTATGAAAACAA
Found at i:1133917 original size:17 final size:18
Alignment explanation
Indices: 1133884--1133917 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
1133874 GTGTTTGTCT
*
1133884 TGAAAACAATGTTTGTTA
1 TGAAAACAATATTTGTTA
1133902 TGAAAAC-ATATTTGTT
1 TGAAAACAATATTTGTT
1133918 TTCGTTAAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.41
Consensus pattern (18 bp):
TGAAAACAATATTTGTTA
Found at i:1134383 original size:26 final size:26
Alignment explanation
Indices: 1134348--1134397 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
1134338 CCCACACACC
* * *
1134348 AATATTGCAGCATAGCTGCGAGTAAT
1 AATATCGCAGCAGAGCTGCCAGTAAT
*
1134374 AATATCGCAGTAGAGCTGCCAGTA
1 AATATCGCAGCAGAGCTGCCAGTA
1134398 CAGTATATGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (26 bp):
AATATCGCAGCAGAGCTGCCAGTAAT
Found at i:1134629 original size:26 final size:26
Alignment explanation
Indices: 1134599--1135015 Score: 429
Period size: 26 Copynumber: 16.0 Consensus size: 26
1134589 ACGGTCATTC
* *
1134599 TACCCTTCAAGGGTATTTCGATAATT
1 TACCCATCGAGGGTATTTCGATAATT
* *
1134625 TACCCATCGAGGTTATTT-TAGTAATT
1 TACCCATCGAGGGTATTTCGA-TAATT
*
1134651 TA-CCATCGAGGGTATTTCAATAATT
1 TACCCATCGAGGGTATTTCGATAATT
1134676 TACCCATCGAGGGTATTTCTG-TAATT
1 TACCCATCGAGGGTATTTC-GATAATT
*
1134702 TACCCA-CTAAGGGTATTTC-AGTAATT
1 TACCCATC-GAGGGTATTTCGA-TAATT
* **
1134728 TACTCATCGAGGGTATTTTATATAATT
1 TACCCATCGAGGGTA-TTTCGATAATT
* *
1134755 TACCCTTCAAGGGTATTTCGATAATT
1 TACCCATCGAGGGTATTTCGATAATT
* * *
1134781 TACCCTTCGAGGGTATTTTGGTAATT
1 TACCCATCGAGGGTATTTCGATAATT
* *
1134807 TACCTATCAAGGGTATTTC-AGTAATT
1 TACCCATCGAGGGTATTTCGA-TAATT
* * * *
1134833 TACCCTTTGAGGGTATTTCAAAAATT
1 TACCCATCGAGGGTATTTCGATAATT
* *
1134859 TACCCTTCGAGGGTATTT-TAGTAATT
1 TACCCATCGAGGGTATTTCGA-TAATT
1134885 TACCCATCGAGGGTATTTCGATAATT
1 TACCCATCGAGGGTATTTCGATAATT
* *
1134911 TACCCTTCGAGGGTATTTTGGA-AATT
1 TACCCATCGAGGGTA-TTTCGATAATT
** *
1134937 TACTGATCAAGGGTATTTCGATAATT
1 TACCCATCGAGGGTATTTCGATAATT
* *
1134963 TAACCATCAAGGGTATTTC-AGTAATT
1 TACCCATCGAGGGTATTTCGA-TAATT
1134989 TACCCATCGAGGGTATTTCGATAATT
1 TACCCATCGAGGGTATTTCGATAATT
1135015 T
1 T
1135016 GGGCCCATTT
Statistics
Matches: 327, Mismatches: 46, Indels: 36
0.80 0.11 0.09
Matches are distributed among these distances:
25 30 0.09
26 267 0.82
27 29 0.09
28 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (26 bp):
TACCCATCGAGGGTATTTCGATAATT
Found at i:1134864 original size:78 final size:77
Alignment explanation
Indices: 1134599--1135015 Score: 502
Period size: 78 Copynumber: 5.4 Consensus size: 77
1134589 ACGGTCATTC
* *
1134599 TACCCTTCAAGGGTATTTCGATAATTTACCCATCGAGGTTATTTTAGTAATTTACCATCGAGGGT
1 TACCCTTCGAGGGTATTTCGATAATTTACCCATCGAGGGTATTTTAGTAATTTACCATCGAGGGT
*
1134664 ATTTCAATAATT
66 ATTTCAGTAATT
* * *
1134676 TACCCATCGAGGGTATTTCTG-TAATTTACCCA-CTAAGGGTATTTCAGTAATTTACTCATCGAG
1 TACCCTTCGAGGGTATTTC-GATAATTTACCCATC-GAGGGTATTTTAGTAATTTAC-CATCGAG
* *
1134739 GGTATTTTATATAATT
63 GGTATTTCA-GTAATT
* * * *
1134755 TACCCTTCAAGGGTATTTCGATAATTTACCCTTCGAGGGTATTTTGGTAATTTACCTATCAAGGG
1 TACCCTTCGAGGGTATTTCGATAATTTACCCATCGAGGGTATTTTAGTAATTTACC-ATCGAGGG
1134820 TATTTCAGTAATT
65 TATTTCAGTAATT
* * * *
1134833 TACCCTTTGAGGGTATTTCAAAAATTTACCCTTCGAGGGTATTTTAGTAATTTACCCATCGAGGG
1 TACCCTTCGAGGGTATTTCGATAATTTACCCATCGAGGGTATTTTAGTAATTTA-CCATCGAGGG
1134898 TATTTC-GATAATT
65 TATTTCAG-TAATT
* ** * * *
1134911 TACCCTTCGAGGGTATTTTGGA-AATTTACTGATCAAGGGTA-TTTCGATAATTTAACCATCAAG
1 TACCCTTCGAGGGTA-TTTCGATAATTTACCCATCGAGGGTATTTTAG-TAATTT-ACCATCGAG
1134974 GGTATTTCAGTAATT
63 GGTATTTCAGTAATT
*
1134989 TACCCATCGAGGGTATTTCGATAATTT
1 TACCCTTCGAGGGTATTTCGATAATTT
1135016 GGGCCCATTT
Statistics
Matches: 294, Mismatches: 32, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
76 1 0.00
77 56 0.19
78 164 0.56
79 72 0.24
80 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (77 bp):
TACCCTTCGAGGGTATTTCGATAATTTACCCATCGAGGGTATTTTAGTAATTTACCATCGAGGGT
ATTTCAGTAATT
Found at i:1138477 original size:40 final size:40
Alignment explanation
Indices: 1138405--1138548 Score: 173
Period size: 40 Copynumber: 3.6 Consensus size: 40
1138395 GTAAATCATA
* * * *
1138405 CCTTGATTGCACATACGTTCCCTTAATT-GTACTTCGGTAC
1 CCTTAATTGCACATACGTGCCCCT-GTTCGTACTTCGGTAC
* * *
1138445 CCCTAATTACACATACGTGCCCCTGTTCGTACTTTGGTAC
1 CCTTAATTGCACATACGTGCCCCTGTTCGTACTTCGGTAC
*
1138485 CCTTAATTGCACATATGTGCCCCTGTTCGTACTTCGGTAC
1 CCTTAATTGCACATACGTGCCCCTGTTCGTACTTCGGTAC
* * *
1138525 TCTTGATTGCACTTACGTGCCCCT
1 CCTTAATTGCACATACGTGCCCCT
1138549 ATTTACACTT
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 86 0.98
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.35
Consensus pattern (40 bp):
CCTTAATTGCACATACGTGCCCCTGTTCGTACTTCGGTAC
Found at i:1145098 original size:14 final size:14
Alignment explanation
Indices: 1145081--1145109 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1145071 CCCGAACTAA
1145081 TACCTTATAACTGT
1 TACCTTATAACTGT
1145095 TACCTTATAACTGT
1 TACCTTATAACTGT
1145109 T
1 T
1145110 GCAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.45
Consensus pattern (14 bp):
TACCTTATAACTGT
Found at i:1146640 original size:3 final size:3
Alignment explanation
Indices: 1146632--1146657 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
1146622 AGATGGCTTG
1146632 TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TC
1146658 ATCATCATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (3 bp):
TCC
Found at i:1146899 original size:20 final size:20
Alignment explanation
Indices: 1146876--1146915 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
1146866 ATAAAACTAT
1146876 GAAATTGTGGACAAAACCAC
1 GAAATTGTGGACAAAACCAC
1146896 GAAATTGTGGACAAAACCAC
1 GAAATTGTGGACAAAACCAC
1146916 AATAATATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.20, G:0.20, T:0.15
Consensus pattern (20 bp):
GAAATTGTGGACAAAACCAC
Found at i:1147753 original size:31 final size:31
Alignment explanation
Indices: 1147717--1147789 Score: 101
Period size: 32 Copynumber: 2.3 Consensus size: 31
1147707 ATACATGATG
*
1147717 AAAAAATTTATGTAAAAACATATTTAAAAAAT
1 AAAAAATTTATATAAAAACATATTT-AAAAAT
* *
1147749 AAAAAATTTATATAAAAACATATTTCAGAAT
1 AAAAAATTTATATAAAAACATATTTAAAAAT
*
1147780 AAAAATTTTA
1 AAAAAATTTA
1147790 AAAAATGAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
31 13 0.35
32 24 0.65
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (31 bp):
AAAAAATTTATATAAAAACATATTTAAAAAT
Found at i:1165583 original size:17 final size:17
Alignment explanation
Indices: 1165563--1165603 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
1165553 AAATACATAA
1165563 ATCTTTCAA-TTCAATGT
1 ATCTTTCAAGTTC-ATGT
*
1165580 ATCTTCCAAGTTCATGT
1 ATCTTTCAAGTTCATGT
1165597 ATCTTTC
1 ATCTTTC
1165604 CTTTTGATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.24, C:0.22, G:0.07, T:0.46
Consensus pattern (17 bp):
ATCTTTCAAGTTCATGT
Found at i:1167347 original size:98 final size:99
Alignment explanation
Indices: 1167240--1167423 Score: 246
Period size: 98 Copynumber: 1.9 Consensus size: 99
1167230 GGAATTCTTC
* *
1167240 AACTTCTTAAAAGACCATTAACATACGACAGAGCCTTA-AAGTGTTAAAAAATAATTTAAAATGT
1 AACTTCTTAAAAGACCACTAACATACGAAAGAGCCTTAGAAGTGTTAAAAAATAATTTAAAATGT
1167304 T-AAAAAGTTTAAAAATAAAATGAAAATAATAAG
66 TAAAAAAGTTTAAAAATAAAATGAAAATAATAAG
* ** * * * * *
1167337 AACTTCCTTAAAAGATCACTAACATGTGAAAGAGCTTTAGAGGTTTTTAAAAATAATTTTAAATG
1 AACTT-CTTAAAAGACCACTAACATACGAAAGAGCCTTAGAAGTGTTAAAAAATAATTTAAAATG
*
1167402 TTAAAAAATTTTAAAAATAAAA
65 TTAAAAAAGTTTAAAAATAAAA
1167424 ACCACTAAAC
Statistics
Matches: 73, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
97 5 0.07
98 27 0.37
99 23 0.32
100 18 0.25
ACGTcount: A:0.51, C:0.09, G:0.10, T:0.30
Consensus pattern (99 bp):
AACTTCTTAAAAGACCACTAACATACGAAAGAGCCTTAGAAGTGTTAAAAAATAATTTAAAATGT
TAAAAAAGTTTAAAAATAAAATGAAAATAATAAG
Found at i:1168516 original size:24 final size:24
Alignment explanation
Indices: 1168489--1168540 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
1168479 GTTCTGTAAA
1168489 TTGATAATTGAATATCACAAATAT
1 TTGATAATTGAATATCACAAATAT
1168513 TTGATAATTGAATATCACAAATAT
1 TTGATAATTGAATATCACAAATAT
1168537 TTGA
1 TTGA
1168541 ATCCACTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (24 bp):
TTGATAATTGAATATCACAAATAT
Found at i:1169765 original size:16 final size:16
Alignment explanation
Indices: 1169746--1169788 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
1169736 AAAATTGAAA
1169746 GGATGAAAAACTAAAG
1 GGATGAAAAACTAAAG
* *
1169762 GGATAAAAAACTAGAG
1 GGATGAAAAACTAAAG
1169778 GGATGAAAAAC
1 GGATGAAAAAC
1169789 ATAATTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.56, C:0.07, G:0.26, T:0.12
Consensus pattern (16 bp):
GGATGAAAAACTAAAG
Found at i:1174061 original size:27 final size:27
Alignment explanation
Indices: 1174024--1174227 Score: 246
Period size: 27 Copynumber: 7.6 Consensus size: 27
1174014 ACATGCGACA
* *
1174024 TGTGGTGATCTATGAAAAGGAAGCCTT
1 TGTGGCGATCTATGAAAAGGAAGCTTT
* *
1174051 GGTGGCGATCTATGAAAAGGAAGCCTT
1 TGTGGCGATCTATGAAAAGGAAGCTTT
* * *
1174078 GGTGGCGATCTATGATAAGAAAGCTTT
1 TGTGGCGATCTATGAAAAGGAAGCTTT
** *
1174105 TGTGATGATCTATGATAAGGAAGCTTT
1 TGTGGCGATCTATGAAAAGGAAGCTTT
*
1174132 TGTGGCGATCTATGAAAATGAAGCTTT
1 TGTGGCGATCTATGAAAAGGAAGCTTT
* * * * *
1174159 CGTGGCGATCCATGATAATGATGCTTT
1 TGTGGCGATCTATGAAAAGGAAGCTTT
*
1174186 TGTGGCAATCTATGAAAAGGAAGCTTT
1 TGTGGCGATCTATGAAAAGGAAGCTTT
*
1174213 TGTGGCGATCCATGA
1 TGTGGCGATCTATGA
1174228 TAATGATGTC
Statistics
Matches: 152, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (27 bp):
TGTGGCGATCTATGAAAAGGAAGCTTT
Found at i:1174164 original size:81 final size:81
Alignment explanation
Indices: 1174024--1174233 Score: 287
Period size: 81 Copynumber: 2.6 Consensus size: 81
1174014 ACATGCGACA
* * * * *
1174024 TGTGGTGATCTATGAAAAGGAAGCCTTGGTGGCGATCTATGAAAAGGAAGCCTTGGTGGCGATCT
1 TGTGGTGATCTATGAAAAGGAAGCTTTTGTGGCGATCTATGAAAATGAAGCCTTCGTGGCGATCC
1174089 ATGATAA-GAAAGCTTT
66 ATGATAATG-AAGCTTT
* * *
1174105 TGTGATGATCTATGATAAGGAAGCTTTTGTGGCGATCTATGAAAATGAAGCTTTCGTGGCGATCC
1 TGTGGTGATCTATGAAAAGGAAGCTTTTGTGGCGATCTATGAAAATGAAGCCTTCGTGGCGATCC
*
1174170 ATGATAATGATGCTTT
66 ATGATAATGAAGCTTT
** * *
1174186 TGTGGCAATCTATGAAAAGGAAGCTTTTGTGGCGATCCATGATAATGA
1 TGTGGTGATCTATGAAAAGGAAGCTTTTGTGGCGATCTATGAAAATGA
1174234 TGTCTTTGTG
Statistics
Matches: 113, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
81 112 0.99
82 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.30
Consensus pattern (81 bp):
TGTGGTGATCTATGAAAAGGAAGCTTTTGTGGCGATCTATGAAAATGAAGCCTTCGTGGCGATCC
ATGATAATGAAGCTTT
Found at i:1174231 original size:54 final size:54
Alignment explanation
Indices: 1174031--1174255 Score: 254
Period size: 54 Copynumber: 4.2 Consensus size: 54
1174021 ACATGTGGTG
* * * * * * *
1174031 ATCTATGAAAAGGAAGCCTTGGTGGCGATCTATGAAAAGGAAGCCTTGGTGGCG
1 ATCTATGAAAAGGAAGCTTTTGTGGCGATCCATGATAAGGAAGCTTTTGTGGCA
* * ** * *
1174085 ATCTATGATAAGAAAGCTTTTGTGATGATCTATGATAAGGAAGCTTTTGTGGCG
1 ATCTATGAAAAGGAAGCTTTTGTGGCGATCCATGATAAGGAAGCTTTTGTGGCA
* * * *
1174139 ATCTATGAAAATGAAGCTTTCGTGGCGATCCATGATAATGATGCTTTTGTGGCA
1 ATCTATGAAAAGGAAGCTTTTGTGGCGATCCATGATAAGGAAGCTTTTGTGGCA
* * *
1174193 ATCTATGAAAAGGAAGCTTTTGTGGCGATCCATGATAATGATG-TCTTTGTGGTA
1 ATCTATGAAAAGGAAGCTTTTGTGGCGATCCATGATAAGGAAGCT-TTTGTGGCA
1174247 ATCTATGAA
1 ATCTATGAA
1174256 GGGAATGCCA
Statistics
Matches: 148, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
53 1 0.01
54 147 0.99
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (54 bp):
ATCTATGAAAAGGAAGCTTTTGTGGCGATCCATGATAAGGAAGCTTTTGTGGCA
Found at i:1180011 original size:20 final size:19
Alignment explanation
Indices: 1179967--1180016 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
1179957 TATGTATTTT
* *
1179967 TTAAATAATATTGATACAT
1 TTAAAAAATATTGATACAA
*
1179986 TTAAAACATATTGATAACAA
1 TTAAAAAATATTGAT-ACAA
1180006 TTAAAAAATAT
1 TTAAAAAATAT
1180017 ATTATTATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.36
Consensus pattern (19 bp):
TTAAAAAATATTGATACAA
Found at i:1180392 original size:20 final size:19
Alignment explanation
Indices: 1180348--1180397 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
1180338 TATGTATTTT
* *
1180348 TTAAATAATATTGATACAT
1 TTAAAAAATATTGATACAA
*
1180367 TTAAAACATATTGATAGCAA
1 TTAAAAAATATTGATA-CAA
1180387 TTAAAAAATAT
1 TTAAAAAATAT
1180398 ATTATTATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 14 0.54
20 12 0.46
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (19 bp):
TTAAAAAATATTGATACAA
Found at i:1180525 original size:381 final size:381
Alignment explanation
Indices: 1179822--1180583 Score: 1515
Period size: 381 Copynumber: 2.0 Consensus size: 381
1179812 AATTTAACAA
1179822 CTCTCAAAACGAATAAAATAAATAAGGTTTAAGAAATAAAACATTTATGTATAAAAATTATGTGA
1 CTCTCAAAACGAATAAAATAAATAAGGTTTAAGAAATAAAACATTTATGTATAAAAATTATGTGA
1179887 AAAAAAGGTTAATTTGAAGTTAATGATATACCCTATGTACATATATACTAAAATAGTCTAATTTA
66 AAAAAAGGTTAATTTGAAGTTAATGATATACCCTATGTACATATATACTAAAATAGTCTAATTTA
1179952 AATTATATGTATTTTTTAAATAATATTGATACATTTAAAACATATTGATAACAATTAAAAAATAT
131 AATTATATGTATTTTTTAAATAATATTGATACATTTAAAACATATTGATAACAATTAAAAAATAT
1180017 ATTATTATTATTATTATTATTATATTTTCTTAAAAAATAGAATTTGTGTTAATAAATAATTTGAA
196 ATTATTATTATTATTATTATTATATTTTCTTAAAAAATAGAATTTGTGTTAATAAATAATTTGAA
1180082 AACAATATCTATCTAATATTAAAATAATGTTAAAAAAACAATGAATATAAAAAAATTGATTTACT
261 AACAATATCTATCTAATATTAAAATAATGTTAAAAAAACAATGAATATAAAAAAATTGATTTACT
1180147 AAAAAAAACTTTCGAAATCAAAATTAACATAAAAGGCATTTTTTGAAATTGAAAAT
326 AAAAAAAACTTTCGAAATCAAAATTAACATAAAAGGCATTTTTTGAAATTGAAAAT
1180203 CTCTCAAAACGAATAAAATAAATAAGGTTTAAGAAATAAAACATTTATGTATAAAAATTATGTGA
1 CTCTCAAAACGAATAAAATAAATAAGGTTTAAGAAATAAAACATTTATGTATAAAAATTATGTGA
1180268 AAAAAAGGTTAATTTGAAGTTAATGATATACCCTATGTACATATATACTAAAATAGTCTAATTTA
66 AAAAAAGGTTAATTTGAAGTTAATGATATACCCTATGTACATATATACTAAAATAGTCTAATTTA
*
1180333 AATTATATGTATTTTTTAAATAATATTGATACATTTAAAACATATTGATAGCAATTAAAAAATAT
131 AATTATATGTATTTTTTAAATAATATTGATACATTTAAAACATATTGATAACAATTAAAAAATAT
1180398 ATTATTATTATTATTATTATTATATTTTCTTAAAAAATAGAATTTGTGTTAATAAATAATTTGAA
196 ATTATTATTATTATTATTATTATATTTTCTTAAAAAATAGAATTTGTGTTAATAAATAATTTGAA
1180463 AACAATATCTATCTAATATTAAAATAATGTTAAAAAAACAATGAATATAAAAAAATTGATTTACT
261 AACAATATCTATCTAATATTAAAATAATGTTAAAAAAACAATGAATATAAAAAAATTGATTTACT
1180528 AAAAAAAACTTTCGAAATCAAAATTAACATAAAAGGCATTTTTTGAAATTGAAAAT
326 AAAAAAAACTTTCGAAATCAAAATTAACATAAAAGGCATTTTTTGAAATTGAAAAT
1180584 AATAATCAAT
Statistics
Matches: 380, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
381 380 1.00
ACGTcount: A:0.49, C:0.07, G:0.08, T:0.36
Consensus pattern (381 bp):
CTCTCAAAACGAATAAAATAAATAAGGTTTAAGAAATAAAACATTTATGTATAAAAATTATGTGA
AAAAAAGGTTAATTTGAAGTTAATGATATACCCTATGTACATATATACTAAAATAGTCTAATTTA
AATTATATGTATTTTTTAAATAATATTGATACATTTAAAACATATTGATAACAATTAAAAAATAT
ATTATTATTATTATTATTATTATATTTTCTTAAAAAATAGAATTTGTGTTAATAAATAATTTGAA
AACAATATCTATCTAATATTAAAATAATGTTAAAAAAACAATGAATATAAAAAAATTGATTTACT
AAAAAAAACTTTCGAAATCAAAATTAACATAAAAGGCATTTTTTGAAATTGAAAAT
Found at i:1181808 original size:18 final size:17
Alignment explanation
Indices: 1181785--1181818 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1181775 ACTCTTTCAA
1181785 AATGGGCTAATTGGGCTG
1 AATGGGC-AATTGGGCTG
*
1181803 AATGGGCATTTGGGCT
1 AATGGGCAATTGGGCT
1181819 AGTTGGGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.21, C:0.12, G:0.38, T:0.29
Consensus pattern (17 bp):
AATGGGCAATTGGGCTG
Found at i:1182296 original size:44 final size:45
Alignment explanation
Indices: 1182233--1182694 Score: 210
Period size: 44 Copynumber: 10.0 Consensus size: 45
1182223 GATCTACTTG
* *
1182233 CTGTAA-CTTCAGAGAGATAAGA-TCCTTTGTTTTAATCTGCTCCA
1 CTGTAATC-TCAGGGAGATAAGATTCCTTTGTTTCAATCTGCTCCA
* * * *
1182277 CTGTAATCTCAGGGAGATAAGATTAC-TAGCTTCAATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATTCCTTTGTTTCAATCTGCTCCA
* * * *
1182321 CTGTAATCTCAGGGAGATAAGATTTCTGGCTTCGATCTGATGCGATCTACTCTA
1 CTGTAATCTCAGGGAGATAAGA-TTC---CTTTG-T-T--T-CAATCTGCTCCA
* * *
1182375 CTGTAA-CTTCAGAGAGATAAGA-TCCTTTGTTTTAATCCGCTCCA
1 CTGTAATC-TCAGGGAGATAAGATTCCTTTGTTTCAATCTGCTCCA
* * * *
1182419 CTGTAATCTCAGGGAGATAGGATTAC-TAGCTTCAATCTGCTCCA
1 CTGTAATCTCAGGGAGATAAGATTCCTTTGTTTCAATCTGCTCCA
* * * * *
1182463 CTGTAATCTCAGGAAGATAAGATTTCTGGCTTCGATCTGATGCGATCTACTCTA
1 CTGTAATCTCAGGGAGATAAGA-TTC---CTTTG-T-T--T-CAATCTGCTCCA
* * *
1182517 CTGTAA-CTTCAGAGAGATAAGA-TCCTTTGTTTTAATCCGCTCCA
1 CTGTAATC-TCAGGGAGATAAGATTCCTTTGTTTCAATCTGCTCCA
* * * * * * * **
1182561 TTGTAATCTTAGGGAGATAGGATTAC-TAGGTTCAATCTACTCTG
1 CTGTAATCTCAGGGAGATAAGATTCCTTTGTTTCAATCTGCTCCA
* * * * * *
1182605 CTATAATCTCAGGGAGCTAGGATT--TTTGGCTTCAGTCTGCCCCA
1 CTGTAATCTCAGGGAGATAAGATTCCTTT-GTTTCAATCTGCTCCA
* * * * ** * *
1182649 CTGTGACCTCAGAGAGATAGGATTGATTT-CTTCTATCTGCTCCA
1 CTGTAATCTCAGGGAGATAAGATTCCTTTGTTTCAATCTGCTCCA
1182693 CT
1 CT
1182695 ACTGCTTAGG
Statistics
Matches: 312, Mismatches: 74, Indels: 64
0.69 0.16 0.14
Matches are distributed among these distances:
43 1 0.00
44 211 0.68
45 15 0.05
46 3 0.01
47 2 0.01
48 4 0.01
49 12 0.04
51 2 0.01
52 4 0.01
53 4 0.01
54 54 0.17
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (45 bp):
CTGTAATCTCAGGGAGATAAGATTCCTTTGTTTCAATCTGCTCCA
Found at i:1182391 original size:142 final size:142
Alignment explanation
Indices: 1182214--1182637 Score: 715
Period size: 142 Copynumber: 3.0 Consensus size: 142
1182204 TGTAGCTCCA
* *
1182214 ATCTGATGCGATCTACT-TGCTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCTGCTCCAC
1 ATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCAC
*
1182278 TGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
66 TGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
1182343 TTTCTGGCTTCG
131 TTTCTGGCTTCG
1182355 ATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCAC
1 ATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCAC
* *
1182420 TGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGAAGATAAGA
66 TGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
1182485 TTTCTGGCTTCG
131 TTTCTGGCTTCG
*
1182497 ATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCAT
1 ATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCAC
* * * * * * *
1182562 TGTAATCTTAGGGAGATAGGATTACTAGGTTCAATCTACTCTGCTATAATCTCAGGGAGCTAGGA
66 TGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
*
1182627 TTTTTGGCTTC
131 TTTCTGGCTTC
1182638 AGTCTGCCCC
Statistics
Matches: 266, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
141 17 0.06
142 249 0.94
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (142 bp):
ATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCAC
TGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
TTTCTGGCTTCG
Found at i:1182783 original size:44 final size:44
Alignment explanation
Indices: 1182677--1182783 Score: 101
Period size: 44 Copynumber: 2.4 Consensus size: 44
1182667 AGGATTGATT
* * * * *
1182677 TCTTCTATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGTAA
1 TCTTCAATCTGCTTCACTGCTGCTTAGGGACATAAGACTAGTAA
* * *
1182721 T-TTCCAATCT-ATTCCACTGCTGGTTAGGGACATAGGACTAGTAA
1 TCTT-CAATCTGCTT-CACTGCTGCTTAGGGACATAAGACTAGTAA
*
1182765 TCTTCGATCTGCTTCACTG
1 TCTTCAATCTGCTTCACTG
1182784 TCGATGCAGG
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
43 3 0.06
44 42 0.86
45 4 0.08
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (44 bp):
TCTTCAATCTGCTTCACTGCTGCTTAGGGACATAAGACTAGTAA
Found at i:1188976 original size:49 final size:47
Alignment explanation
Indices: 1188827--1189188 Score: 544
Period size: 49 Copynumber: 7.6 Consensus size: 47
1188817 TTAAACCCAT
1188827 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
1188874 ATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTG-ATAAGGCCTAATGGCCGATGTGATGA
*
1188922 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
1188971 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
1189020 ATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1189067 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
1189116 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
1189163 ATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
1189189 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
47 117 0.40
48 36 0.12
49 129 0.44
50 10 0.03
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:1189073 original size:96 final size:96
Alignment explanation
Indices: 1188827--1189188 Score: 561
Period size: 96 Copynumber: 3.8 Consensus size: 96
1188817 TTAAACCCAT
1188827 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
1188890 ATGTGAATAGGGCCTAATGGCCGATGTGATGA
66 ATGTG-ATAAGGCCTAATGGCCGATGTGATGA
*
1188922 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
1188987 ATATGTGATAAGGCTTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
1189020 ATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1189085 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
1189116 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGGATGTGAAAGTGCATA-A-
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1189179 ATGTGATAAG
66 ATGTGATAAG
1189189 TCCCGAAGGG
Statistics
Matches: 247, Mismatches: 16, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
94 10 0.04
95 12 0.05
96 134 0.54
97 46 0.19
98 35 0.14
99 10 0.04
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:1189363 original size:37 final size:37
Alignment explanation
Indices: 1189307--1189384 Score: 120
Period size: 37 Copynumber: 2.1 Consensus size: 37
1189297 CTGAGCTCTA
* **
1189307 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTACGTCCGGGT
*
1189344 AAGACCCGATAACTTCGTGTGGAGATTACGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTACGTCCGGGT
1189381 AAGA
1 AAGA
1189385 TTTCGTAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTACGTCCGGGT
Found at i:1191507 original size:24 final size:24
Alignment explanation
Indices: 1191464--1191509 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
1191454 TATCCTCTTG
*
1191464 CTCCACCATTACCAATAAGTCCTA
1 CTCCACCATTACCAACAAGTCCTA
1191488 CTCCACCATT-CTCAACAAGTCC
1 CTCCACCATTAC-CAACAAGTCC
1191510 GGAAATACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.30, C:0.41, G:0.04, T:0.24
Consensus pattern (24 bp):
CTCCACCATTACCAACAAGTCCTA
Found at i:1197178 original size:19 final size:20
Alignment explanation
Indices: 1197150--1197198 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
1197140 ATGTATTTTG
* *
1197150 TAAATAATATTGAT-ACATT
1 TAAAAAATATTGATAACAAT
*
1197169 TAAAACATATTGATAACAAT
1 TAAAAAATATTGATAACAAT
1197189 TAAAAAATAT
1 TAAAAAATAT
1197199 ATTATTATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.55, C:0.06, G:0.04, T:0.35
Consensus pattern (20 bp):
TAAAAAATATTGATAACAAT
Found at i:1198333 original size:11 final size:11
Alignment explanation
Indices: 1198317--1198341 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1198307 GATTTACAGA
1198317 AAATAGAGAAT
1 AAATAGAGAAT
1198328 AAATAGAGAAT
1 AAATAGAGAAT
1198339 AAA
1 AAA
1198342 AATCAATCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (11 bp):
AAATAGAGAAT
Found at i:1205019 original size:34 final size:34
Alignment explanation
Indices: 1204981--1205047 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
1204971 TTTTATGCAA
*
1204981 TAATCCTTAAGTCCTTTATCTCTGGATTGGACAG
1 TAATCCTTAAGTCCTTTATCTCTAGATTGGACAG
1205015 TAATCCTTAAGTCCTTTATCTCTAGATTGGACA
1 TAATCCTTAAGTCCTTTATCTCTAGATTGGACA
1205048 CAAGTCATGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (34 bp):
TAATCCTTAAGTCCTTTATCTCTAGATTGGACAG
Found at i:1211754 original size:19 final size:19
Alignment explanation
Indices: 1211723--1211761 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
1211713 TTAAATTCCA
1211723 ATTTAACCCAAAA-TATTT
1 ATTTAACCCAAAATTATTT
*
1211741 ATTTTACCCAAAAATTATTT
1 ATTTAACCC-AAAATTATTT
1211761 A
1 A
1211762 AAACCATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 4 0.22
20 6 0.33
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTTAACCCAAAATTATTT
Found at i:1219528 original size:31 final size:31
Alignment explanation
Indices: 1219492--1219552 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
1219482 AGATAATTTT
1219492 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1219523 AAAGAGTTTTATTAGGATTCAATTACTCTT
1 AAAGAGTTTTATTAGGATTCAATTACTCTT
1219553 TTAATTTGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.43
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:1221497 original size:32 final size:32
Alignment explanation
Indices: 1221444--1221524 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 32
1221434 ATATCCTAAC
* * * * *
1221444 CTTAACATACAAACTTGTGAACTCTGTTCGCA
1 CTTAACAAACATACTTATGAACACAGTTCGCA
* *
1221476 TTTAACAAACATACTTATGAACACAGTTCTCA
1 CTTAACAAACATACTTATGAACACAGTTCGCA
*
1221508 CTTAACAAATATACTTA
1 CTTAACAAACATACTTA
1221525 CTGGAATGGA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.38, C:0.22, G:0.07, T:0.32
Consensus pattern (32 bp):
CTTAACAAACATACTTATGAACACAGTTCGCA
Found at i:1236395 original size:21 final size:21
Alignment explanation
Indices: 1236371--1236410 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
1236361 TACATCTAAT
*
1236371 TTTGGTGTGGATGCATCTGGC
1 TTTGGTATGGATGCATCTGGC
* *
1236392 TTTGTTATTGATGCATCTG
1 TTTGGTATGGATGCATCTG
1236411 AGTGTGCTGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.30, T:0.45
Consensus pattern (21 bp):
TTTGGTATGGATGCATCTGGC
Found at i:1241744 original size:21 final size:22
Alignment explanation
Indices: 1241708--1241750 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
1241698 ATTTCGATAG
* *
1241708 AATTTTTATCATAAAA-TAAAT
1 AATTTTTATAAAAAAATTAAAT
1241729 AATTTTTATAAAAAAATTAAAT
1 AATTTTTATAAAAAAATTAAAT
1241751 TGTATTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AATTTTTATAAAAAAATTAAAT
Found at i:1241788 original size:25 final size:22
Alignment explanation
Indices: 1241760--1241811 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 22
1241750 TTGTATTAAA
1241760 AATTTGAAAATTTTAATTTTTAGTC
1 AATTTGAAAA--TT-ATTTTTAGTC
* *
1241785 AATTTTAAAATTATTTTTAGTG
1 AATTTGAAAATTATTTTTAGTC
1241807 AATTT
1 AATTT
1241812 TGATTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 14 0.56
23 2 0.08
25 9 0.36
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.54
Consensus pattern (22 bp):
AATTTGAAAATTATTTTTAGTC
Found at i:1249325 original size:22 final size:21
Alignment explanation
Indices: 1249300--1249343 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
1249290 TGATAAACTT
1249300 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
1249322 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
1249343 T
1 T
1249344 CAACTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:1250870 original size:19 final size:18
Alignment explanation
Indices: 1250829--1250871 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
1250819 CAATTTTATC
* * *
1250829 ATAAAATAATTAATTTTT
1 ATAAAAGAATTAAATTGT
1250847 ATAAAAGAATTAAATTGT
1 ATAAAAGAATTAAATTGT
1250865 ATTAAAA
1 A-TAAAA
1250872 TTTTGAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (18 bp):
ATAAAAGAATTAAATTGT
Found at i:1266544 original size:22 final size:25
Alignment explanation
Indices: 1266519--1266563 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
1266509 AGATTGAATG
1266519 ATTTAAA-A-TATG-TGTTTAATTT
1 ATTTAAATATTATGTTGTTTAATTT
1266541 ATTTAAATATTATGTTGTTTAAT
1 ATTTAAATATTATGTTGTTTAAT
1266564 GTTTTCGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 1 0.05
24 4 0.20
25 8 0.40
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.56
Consensus pattern (25 bp):
ATTTAAATATTATGTTGTTTAATTT
Found at i:1276156 original size:316 final size:316
Alignment explanation
Indices: 1275583--1276209 Score: 1076
Period size: 316 Copynumber: 2.0 Consensus size: 316
1275573 TTGTTAGATG
* * * * *
1275583 TAGTACCAAGGGTCATTTTCCCCAACATTTCAAAAGAGAATTTTGCCATGGAAAATAAGGTTATT
1 TAGTACCAAGGGTCATTTGCCCCAACATTTCAAAAAAGAATTTTGCCATAGAAAACAAGGTTAAT
* *
1275648 GGATATTGAAGCAAGAGAAAATGAGGATTGACAAGAAAGAACGGTTCAAGGAAAATATTTTGGAC
66 GGATATTGAAGCAAGAGAAAATGAGGACTGACAAGAAAGAACGGTTCAAGGAAAAGATTTTGGAC
1275713 AGTTGGGCCCATTCTACTAATTAGGTAGCCCATGAAGAAAATGCCAAACGTGTTGCTTTAGGGCT
131 AGTTGGGCCCATTCTACTAATTAGGTAGCCCATGAAGAAAATGCCAAACGTGTTGCTTTAGGGCT
1275778 AGGTCATTTTAGGGTTCCCTCCAAAACATTTTTATTTTTCCCCTTTCATTCCACAAAACTTATCT
196 AGGTCATTTTAGGGTTCCCTCCAAAACATTTTTATTTTTCCCCTTTCATTCCACAAAACTTATCT
* * *
1275843 GCAAGCTTTTCTGAACCGTCAACACCAATTCCGCCATTTACTTCTCTTCAATGATT
261 GCAAGCTTTTCTGAACCGTCAACAACAATACCCCCATTTACTTCTCTTCAATGATT
* * *
1275899 TAGTACCAAGAGG-CGTTTGCCCTAACATTTCAAAAAAGAATTTTGCCATAGAAAACAGGGTTAA
1 TAGTACCAAG-GGTCATTTGCCCCAACATTTCAAAAAAGAATTTTGCCATAGAAAACAAGGTTAA
*
1275963 TGGATATTGAAGCAAGAGAAAATGAGGACTGACAAGAAAGAACGGTTTAAGGAAAAGATTTTGGA
65 TGGATATTGAAGCAAGAGAAAATGAGGACTGACAAGAAAGAACGGTTCAAGGAAAAGATTTTGGA
*
1276028 CAGTTGGGCCCATTCTGCTAATTAGGTAGCCCATGAAGAAAATGCCAAACGTGTTGCTTTAGGGC
130 CAGTTGGGCCCATTCTACTAATTAGGTAGCCCATGAAGAAAATGCCAAACGTGTTGCTTTAGGGC
* * *
1276093 TAGGTCATTTTAGGGTTCCCTCCAAAGCATTTTTATTTTTCCTCTTTCATTCTACAAAACTTATC
195 TAGGTCATTTTAGGGTTCCCTCCAAAACATTTTTATTTTTCCCCTTTCATTCCACAAAACTTATC
1276158 TGCAAGCTTTTCTGAACCGTCAACAACAATACCCCCATTTACTTCTCTTCAA
260 TGCAAGCTTTTCTGAACCGTCAACAACAATACCCCCATTTACTTCTCTTCAA
1276210 CTTCCCACGC
Statistics
Matches: 292, Mismatches: 18, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
316 290 0.99
317 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (316 bp):
TAGTACCAAGGGTCATTTGCCCCAACATTTCAAAAAAGAATTTTGCCATAGAAAACAAGGTTAAT
GGATATTGAAGCAAGAGAAAATGAGGACTGACAAGAAAGAACGGTTCAAGGAAAAGATTTTGGAC
AGTTGGGCCCATTCTACTAATTAGGTAGCCCATGAAGAAAATGCCAAACGTGTTGCTTTAGGGCT
AGGTCATTTTAGGGTTCCCTCCAAAACATTTTTATTTTTCCCCTTTCATTCCACAAAACTTATCT
GCAAGCTTTTCTGAACCGTCAACAACAATACCCCCATTTACTTCTCTTCAATGATT
Found at i:1276385 original size:145 final size:144
Alignment explanation
Indices: 1276122--1276411 Score: 438
Period size: 145 Copynumber: 2.0 Consensus size: 144
1276112 CTCCAAAGCA
* * *
1276122 TTTTTATTTTTCCTCTTTCATTCTACAAAACTTATCTGCAAGCTTTTCTGAACCGTCAACAACAA
1 TTTTTATTTTTCCTCTTTCATTCCACAAAACTTATCTACAAGCTTTTCTGAACCATCAACAACAA
* * *
1276187 TACCCCCATTTACTTCTCTTCAACTTCCCACGCCTCTTTAATTTTCCTCAATTCATTTACGTTTT
66 TACCCCCATTTACTTCTCTTCAACTGCCCACGCCTCTTTAATTTTCCACAATTCATTCACG-TTT
1276252 ACAATTTCTTTTTCC
130 ACAATTTCTTTTTCC
* * *
1276267 TTTTTATTTTTCCTCTTTCATTCCACAATACTTACTCTACAAGCTTTTTTGAACCATCAACACCA
1 TTTTTATTTTTCCTCTTTCATTCCACAAAACTTA-TCTACAAGCTTTTCTGAACCATCAACAACA
* *
1276332 ATA-CCCCATTTACTTCTCTTCAACTGCCCACGCCTCTTTCATTTTCCACAATTCCTTCACGTTT
65 ATACCCCCATTTACTTCTCTTCAACTGCCCACGCCTCTTTAATTTTCCACAATTCATTCACGTTT
* *
1276396 ACTATTTTTTTTTCC
130 ACAATTTCTTTTTCC
1276411 T
1 T
1276412 AAACCTTCCT
Statistics
Matches: 131, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
144 17 0.13
145 85 0.65
146 29 0.22
ACGTcount: A:0.22, C:0.30, G:0.04, T:0.44
Consensus pattern (144 bp):
TTTTTATTTTTCCTCTTTCATTCCACAAAACTTATCTACAAGCTTTTCTGAACCATCAACAACAA
TACCCCCATTTACTTCTCTTCAACTGCCCACGCCTCTTTAATTTTCCACAATTCATTCACGTTTA
CAATTTCTTTTTCC
Found at i:1277592 original size:11 final size:11
Alignment explanation
Indices: 1277576--1277615 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
1277566 AGGGAGTGAA
1277576 GAGAGAAAAGT
1 GAGAGAAAAGT
1277587 GAGAGAAAAGT
1 GAGAGAAAAGT
*
1277598 GAGAGAGAAGT
1 GAGAGAAAAGT
1277609 GA-AGAAA
1 GAGAGAAA
1277616 TAAATGGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 4 0.15
11 23 0.85
ACGTcount: A:0.55, C:0.00, G:0.38, T:0.07
Consensus pattern (11 bp):
GAGAGAAAAGT
Found at i:1277603 original size:13 final size:13
Alignment explanation
Indices: 1277570--1277606 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 13
1277560 AATGGAAGGG
1277570 AGTGAAGAGAGAAA
1 AGTG-AGAGAGAAA
1277584 AGT--GAGAGAAA
1 AGTGAGAGAGAAA
1277595 AGTGAGAGAGAA
1 AGTGAGAGAGAA
1277607 GTGAAGAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 11 0.52
13 7 0.33
14 3 0.14
ACGTcount: A:0.54, C:0.00, G:0.38, T:0.08
Consensus pattern (13 bp):
AGTGAGAGAGAAA
Found at i:1280141 original size:3 final size:3
Alignment explanation
Indices: 1280133--1280955 Score: 1646
Period size: 3 Copynumber: 274.3 Consensus size: 3
1280123 CTGTGTGGGA
1280133 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280181 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280229 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280277 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280325 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280373 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280421 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280469 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280517 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280565 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280613 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280661 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280709 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280757 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280805 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280853 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280901 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1280949 TCT TCT T
1 TCT TCT T
1280956 TAGGATCCTC
Statistics
Matches: 820, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 820 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:1282461 original size:22 final size:22
Alignment explanation
Indices: 1282436--1282477 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
1282426 GCTATTAATT
*
1282436 TATTAAAAAATTTTAACTAAAA
1 TATTAAAAAATTTAAACTAAAA
**
1282458 TATTATCAAATTTAAACTAA
1 TATTAAAAAATTTAAACTAA
1282478 TCCTAATTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (22 bp):
TATTAAAAAATTTAAACTAAAA
Found at i:1290660 original size:34 final size:34
Alignment explanation
Indices: 1290616--1290682 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
1290606 ACAACTCCCT
*
1290616 TCAAATGGCTCTAATCTCCCCTCCAATGAAGAAC
1 TCAAACGGCTCTAATCTCCCCTCCAATGAAGAAC
*
1290650 TCAAACGGCTCTAATCTCCTCTCCAATGAAGAA
1 TCAAACGGCTCTAATCTCCCCTCCAATGAAGAA
1290683 AAATGGCAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.33, C:0.31, G:0.12, T:0.24
Consensus pattern (34 bp):
TCAAACGGCTCTAATCTCCCCTCCAATGAAGAAC
Found at i:1303044 original size:16 final size:17
Alignment explanation
Indices: 1303011--1303056 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
1303001 GATTAGTCTA
*
1303011 AAAATTTTTAATGCTAAC
1 AAAATTTTCAAT-CTAAC
1303029 AAAATTTTCAAT-TAAC
1 AAAATTTTCAATCTAAC
*
1303045 AAAATTTCCAAT
1 AAAATTTTCAAT
1303057 ACAACTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 15 0.58
18 11 0.42
ACGTcount: A:0.48, C:0.13, G:0.02, T:0.37
Consensus pattern (17 bp):
AAAATTTTCAATCTAAC
Found at i:1306268 original size:51 final size:49
Alignment explanation
Indices: 1306213--1306310 Score: 169
Period size: 51 Copynumber: 2.0 Consensus size: 49
1306203 TAGTCCTTTG
1306213 TTCAGTAATGGAAACAAAAACTGCGTTTACTTTATATTCCCCCCCCCCCC
1 TTCAGTAATGGAAACAAAAACTGCGTTTACTTTATA-TCCCCCCCCCCCC
*
1306263 NTTCAGTAATGGAAACAAAAATTGCGTTTACTTTATATCCCCCCCCCC
1 -TTCAGTAATGGAAACAAAAACTGCGTTTACTTTATATCCCCCCCCCC
1306311 AAAATGCAAG
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
50 11 0.24
51 35 0.76
ACGTcount: A:0.29, C:0.32, G:0.10, T:0.29
Consensus pattern (49 bp):
TTCAGTAATGGAAACAAAAACTGCGTTTACTTTATATCCCCCCCCCCCC
Found at i:1308946 original size:17 final size:17
Alignment explanation
Indices: 1308924--1308958 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
1308914 TGCCATTGTT
1308924 AGTTTACTTCTATTCTA
1 AGTTTACTTCTATTCTA
1308941 AGTTTACTTCTATTCTA
1 AGTTTACTTCTATTCTA
1308958 A
1 A
1308959 ATATGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.26, C:0.17, G:0.06, T:0.51
Consensus pattern (17 bp):
AGTTTACTTCTATTCTA
Found at i:1313594 original size:34 final size:34
Alignment explanation
Indices: 1313556--1313628 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 34
1313546 AGATTTATCA
* * * *
1313556 GTTGAGTTTTTGAAGAAGGAAAGAAGTTTTATTG
1 GTTGAGCTTTTCAAGAAGGAAAGAAGTTTCATAG
*
1313590 GTTGAGCTTTTCAAGAAGGGAAGAAGTTTCATAG
1 GTTGAGCTTTTCAAGAAGGAAAGAAGTTTCATAG
1313624 GTTGA
1 GTTGA
1313629 TTATCGATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.04, G:0.30, T:0.34
Consensus pattern (34 bp):
GTTGAGCTTTTCAAGAAGGAAAGAAGTTTCATAG
Found at i:1324962 original size:28 final size:27
Alignment explanation
Indices: 1324898--1325105 Score: 326
Period size: 28 Copynumber: 7.6 Consensus size: 27
1324888 TTATTAAGTC
* * *
1324898 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
1324925 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCA-ACT
1324953 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
1324980 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
1325008 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
1325036 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
1325064 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
1325091 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
1325106 GCACAATTTA
Statistics
Matches: 173, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
27 66 0.38
28 107 0.62
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:1324982 original size:55 final size:55
Alignment explanation
Indices: 1324898--1325105 Score: 344
Period size: 55 Copynumber: 3.8 Consensus size: 55
1324888 TTATTAAGTC
* * * *
1324898 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAGTCAAACT
*
1324953 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAGTCAAACT
1325008 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACTCGCACACTTAGTGCTACATAGTCAAACT
* *
1325064 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCT
1325106 GCACAATTTA
Statistics
Matches: 144, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
55 90 0.62
56 54 0.38
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:1325018 original size:83 final size:83
Alignment explanation
Indices: 1324898--1325130 Score: 360
Period size: 83 Copynumber: 2.8 Consensus size: 83
1324888 TTATTAAGTC
* * * *
1324898 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1324963 GTGCTACATAGTC-AACT
66 GTGCTACATAGTCAAACT
1324980 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
1325045 AGTGCTACATAGTCAAACT
65 AGTGCTACATAGTCAAACT
* * * * *
1325064 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACCCGCACACTT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACTCGCACACTT
1325129 AG
65 AG
1325131 CGCCAATCTC
Statistics
Matches: 139, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
82 20 0.14
83 76 0.55
84 43 0.31
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (83 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAAACT
Found at i:1329360 original size:16 final size:16
Alignment explanation
Indices: 1329339--1329370 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1329329 TTTTTGTTGC
*
1329339 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
1329355 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
1329371 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:1332594 original size:42 final size:42
Alignment explanation
Indices: 1332514--1332595 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
1332504 CGTTTTCTCT
* **
1332514 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
**
1332556 ATGCCATAGCCCAGTTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
1332596 CACATCGATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:1335404 original size:16 final size:16
Alignment explanation
Indices: 1335383--1335414 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1335373 ATTTTGTTGC
*
1335383 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
1335399 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
1335415 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:1336063 original size:16 final size:16
Alignment explanation
Indices: 1336038--1336068 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1336028 ATCCAGTCCA
1336038 AAAATCACATTTTTGG
1 AAAATCACATTTTTGG
*
1336054 AAAATTACATTTTTG
1 AAAATCACATTTTTG
1336069 TCCCTCAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.42
Consensus pattern (16 bp):
AAAATCACATTTTTGG
Found at i:1336653 original size:94 final size:94
Alignment explanation
Indices: 1336513--1336700 Score: 358
Period size: 94 Copynumber: 2.0 Consensus size: 94
1336503 ATTTCGTTCA
1336513 CCATGGAGAAGATGGACAAATTTTTGGCTATTTTGGCCTTTTTAATTCTTTTAATTACTAAATGA
1 CCATGGAGAAGATGGACAAATTTTTGGCTATTTTGGCCTTTTTAATTCTTTTAATTACTAAATGA
1336578 CCAAAATGCCCCCAACATAAAAATTTCCT
66 CCAAAATGCCCCCAACATAAAAATTTCCT
1336607 CCATGGAGAAGATGGACAAATTTTTGGCTATTTTGGCCTTTTTAATTCTTTTAATTACTAAATGA
1 CCATGGAGAAGATGGACAAATTTTTGGCTATTTTGGCCTTTTTAATTCTTTTAATTACTAAATGA
* *
1336672 CCAAAATGCCCCCAACTTAAAATTTTCCT
66 CCAAAATGCCCCCAACATAAAAATTTCCT
1336701 ATTTCACTTA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (94 bp):
CCATGGAGAAGATGGACAAATTTTTGGCTATTTTGGCCTTTTTAATTCTTTTAATTACTAAATGA
CCAAAATGCCCCCAACATAAAAATTTCCT
Found at i:1337070 original size:41 final size:40
Alignment explanation
Indices: 1337013--1337228 Score: 151
Period size: 41 Copynumber: 5.5 Consensus size: 40
1337003 GGGCTGTTAC
1337013 AAATTGCACGA-ACGTGCCCTTGTTTGGACTTTGATACCCCT
1 AAATTGCAC-ATACGTGCCC-TGTTTGGACTTTGATACCCCT
* **
1337054 AAATTGCACATACGTGCCCCTGTTTAGACTTCAATACCCCT
1 AAATTGCACATACGTG-CCCTGTTTGGACTTTGATACCCCT
* * * *
1337095 GAATT--AC--AC---CCCTATTTAGACTTTGATACCCTT
1 AAATTGCACATACGTGCCCTGTTTGGACTTTGATACCCCT
* * * * *
1337128 GAATTGTACATGCGTGCGCCCGTTTGGACTTTGGTACCCCT
1 AAATTGCACATACGTGC-CCTGTTTGGACTTTGATACCCCT
* * * * * *
1337169 AAATTACACATGCATGCCCTTATTTGTACTTTGGTACCCCT
1 AAATTGCACATACGTGCCC-TGTTTGGACTTTGATACCCCT
* *
1337210 GAATTGCATATACGTGCCC
1 AAATTGCACATACGTGCCC
1337229 CTATTTACAC
Statistics
Matches: 138, Mismatches: 26, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
33 25 0.18
35 2 0.01
37 3 0.02
39 2 0.01
40 4 0.03
41 99 0.72
42 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (40 bp):
AAATTGCACATACGTGCCCTGTTTGGACTTTGATACCCCT
Found at i:1337113 original size:33 final size:33
Alignment explanation
Indices: 1337070--1337132 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
1337060 CACATACGTG
*
1337070 CCCCTGTTTAGACTTCAATACCCCTGAATTACA
1 CCCCTATTTAGACTTCAATACCCCTGAATTACA
** *
1337103 CCCCTATTTAGACTTTGATACCCTTGAATT
1 CCCCTATTTAGACTTCAATACCCCTGAATT
1337133 GTACATGCGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.25, C:0.30, G:0.10, T:0.35
Consensus pattern (33 bp):
CCCCTATTTAGACTTCAATACCCCTGAATTACA
Found at i:1337166 original size:74 final size:74
Alignment explanation
Indices: 1337039--1337177 Score: 181
Period size: 74 Copynumber: 1.9 Consensus size: 74
1337029 CCCTTGTTTG
*
1337039 GACTTTGATACCCCTAAATTGCACATACGTGCCCCTGTTTAGACTTCAATACCCCTGAATTACAC
1 GACTTTGATACCCCTAAATTGCACATACGTGCCCCTGTTTAGACTTCAATACCCCTAAATTACAC
1337104 CCCTATTTA
66 CCCTATTTA
* * * * * ***
1337113 GACTTTGATACCCTTGAATTGTACATGCGTGCGCCC-GTTTGGACTTTGGTACCCCTAAATTACA
1 GACTTTGATACCCCTAAATTGCACATACGTGC-CCCTGTTTAGACTTCAATACCCCTAAATTACA
1337177 C
65 C
1337178 ATGCATGCCC
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
74 52 0.95
75 3 0.05
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (74 bp):
GACTTTGATACCCCTAAATTGCACATACGTGCCCCTGTTTAGACTTCAATACCCCTAAATTACAC
CCCTATTTA
Found at i:1346729 original size:22 final size:21
Alignment explanation
Indices: 1346694--1346734 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
1346684 GATTAAGGAA
1346694 AATTATGCATGTATATGTATG
1 AATTATGCATGTATATGTATG
1346715 AATTATGCCATGTATATGTA
1 AATTATG-CATGTATATGTA
1346735 GAGGTACTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.41
Consensus pattern (21 bp):
AATTATGCATGTATATGTATG
Found at i:1347070 original size:142 final size:142
Alignment explanation
Indices: 1346814--1347236 Score: 837
Period size: 142 Copynumber: 3.0 Consensus size: 142
1346804 ATATGGGTTT
1346814 GGGGTGTTACATTACATCATATTTTCCATCTTTTTGTATTGAATATTTTCATTCTCATCCCAAAT
1 GGGGTGTTACATTACATCATATTTTCCATCTTTTTGTATTGAATATTTTCATTCTCATCCCAAAT
1346879 CAACTTTGCTTCTTGATTTCTTGCTCTATCGTTAAATAATATCCTTAATCTTTTTCAAGAATTGG
66 CAACTTTGCTTCTTGATTTCTTGCTCTATCGTTAAATAATATCCTTAATCTTTTTCAAGAATTGG
1346944 TAAGTACATTTA
131 TAAGTACATTTA
1346956 GGGGTGTTACATTACATCATATTTTCCATCTTTTTGTATTGAATATTTTCATTCTCATCCCAAAT
1 GGGGTGTTACATTACATCATATTTTCCATCTTTTTGTATTGAATATTTTCATTCTCATCCCAAAT
1347021 CAACTTTGCTTCTTGATTTCTTGCTCTATCGTTAAATAATATCCTTAATCTTTTTCAAGAATTGG
66 CAACTTTGCTTCTTGATTTCTTGCTCTATCGTTAAATAATATCCTTAATCTTTTTCAAGAATTGG
1347086 TAAGTACATTTA
131 TAAGTACATTTA
*
1347098 GGGGTGTTACATTACATCATATTTTCCATCTTTTTGTATTGAATATTTTCATTCTCATACCAAAT
1 GGGGTGTTACATTACATCATATTTTCCATCTTTTTGTATTGAATATTTTCATTCTCATCCCAAAT
1347163 CAACTTTGCTTCTTGATTTCTTGCTCTATCGTTAAATAATATCCTTAATCTTTTTCAAGAATTGG
66 CAACTTTGCTTCTTGATTTCTTGCTCTATCGTTAAATAATATCCTTAATCTTTTTCAAGAATTGG
1347228 TAAGTACAT
131 TAAGTACAT
1347237 CTTAATCCCG
Statistics
Matches: 280, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
142 280 1.00
ACGTcount: A:0.26, C:0.17, G:0.11, T:0.46
Consensus pattern (142 bp):
GGGGTGTTACATTACATCATATTTTCCATCTTTTTGTATTGAATATTTTCATTCTCATCCCAAAT
CAACTTTGCTTCTTGATTTCTTGCTCTATCGTTAAATAATATCCTTAATCTTTTTCAAGAATTGG
TAAGTACATTTA
Found at i:1349155 original size:21 final size:23
Alignment explanation
Indices: 1349111--1349155 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
1349101 CACTCATGAT
* *
1349111 TTTTTTTCTGAAGATAGAATAAA
1 TTTTCTTCTGAAGATAGAACAAA
1349134 TTTTCTTCT-AAGATA-AACAAA
1 TTTTCTTCTGAAGATAGAACAAA
1349155 T
1 T
1349156 GTTTTAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 6 0.30
23 8 0.40
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (23 bp):
TTTTCTTCTGAAGATAGAACAAA
Found at i:1373170 original size:10 final size:11
Alignment explanation
Indices: 1373152--1373180 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
1373142 TACTCCTAAG
1373152 CACCTATTTAA
1 CACCTATTTAA
1373163 CA-CTATTTAA
1 CACCTATTTAA
1373173 CACCTATT
1 CACCTATT
1373181 GTTGAATGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (11 bp):
CACCTATTTAA
Found at i:1377276 original size:28 final size:28
Alignment explanation
Indices: 1377197--1377322 Score: 135
Period size: 28 Copynumber: 4.4 Consensus size: 28
1377187 ATACAACATG
* * * *
1377197 CAGTAACAGTCTGGGCCTGAGCCCTATT
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
**
1377225 CAGTAACAGTACAGTGTGGCCTTAGCCTGATA
1 CAGTAACAGT---GTG-GGCCTTAGCCCAATA
* *
1377257 TAGTAATAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
1377285 CAGTAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
*
1377313 CAATAACAGT
1 CAGTAACAGT
1377323 ACAGTGTAGT
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
28 58 0.71
29 3 0.04
31 2 0.02
32 19 0.23
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:1377455 original size:26 final size:26
Alignment explanation
Indices: 1377426--1377476 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1377416 ACACACCAAT
*
1377426 ATCGCAACAGAGCTGCCAGTAATAGA
1 ATCGCAACAAAGCTGCCAGTAATAGA
*
1377452 ATCGCAATAAAGCTGCCAGTAATAG
1 ATCGCAACAAAGCTGCCAGTAATAG
1377477 TATATGTGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
ATCGCAACAAAGCTGCCAGTAATAGA
Found at i:1377766 original size:27 final size:26
Alignment explanation
Indices: 1377713--1378442 Score: 661
Period size: 27 Copynumber: 27.1 Consensus size: 26
1377703 TATATCAGTA
* *
1377713 ATTTTACCCTTCAGGGTATTTCAGTC
1 ATTTTACCCTTCGGGGTATTTCGGTC
*
1377739 ATTTTACCTTTCAGGGGTATTTCGGTC
1 ATTTTACCCTTC-GGGGTATTTCGGTC
* * *
1377766 ATTTTACCTTTTGGGGGTATTTTGGTC
1 ATTTTACC-CTTCGGGGTATTTCGGTC
* *
1377793 ATTTTACCCATCGGAGGTATTTCGATC
1 ATTTTACCCTTCGG-GGTATTTCGGTC
* *
1377820 ATTTTACCCATT-GAGGCTATTTCGATC
1 ATTTTACCC-TTCG-GGGTATTTCGGTC
* *
1377847 ATTTTACCCATCAGGGGTATTTCGATC
1 ATTTTACCCTTC-GGGGTATTTCGGTC
*** *
1377874 ATTTTACGAGTCGAGGGTATTTCGATC
1 ATTTTACCCTTCG-GGGTATTTCGGTC
*
1377901 ATTTTACCCTTCGGGGGTATTTCGATC
1 ATTTTACCCTTC-GGGGTATTTCGGTC
* **
1377928 ATTTTACCCTTTGGGGGTATTTCAATC
1 ATTTTACCC-TTCGGGGTATTTCGGTC
**
1377955 ATTTTACCCTTCGGGGGTATTTTAGTC
1 ATTTTACCCTTC-GGGGTATTTCGGTC
* * * *
1377982 ATTTTACCATTCGACGGTATTTCGATT
1 ATTTTACCCTTCG-GGGTATTTCGGTC
* * **
1378009 ATTTTACCCATCGATGGTATTTTAGTC
1 ATTTTACCCTTCG-GGGTATTTCGGTC
* * * *
1378036 ATTTTACCCATCGGGGGAATTTCAGTG
1 ATTTTACCCTTC-GGGGTATTTCGGTC
* *
1378063 ATTTTACCCTTTGAGGGTATTTCGATC
1 ATTTTACCCTTCG-GGGTATTTCGGTC
* * *
1378090 ATATTACCTTTCGGGGGTATTTCGGTT
1 ATTTTACCCTTC-GGGGTATTTCGGTC
*
1378117 ATTTTACCCTTCGAGGGTATTTTGGTC
1 ATTTTACCCTTCG-GGGTATTTCGGTC
*
1378144 ATTTTACCCTTCGAGGGTATTTTGGTC
1 ATTTTACCCTTCG-GGGTATTTCGGTC
* * * *
1378171 ATTTTACCCATCAGGGTATTTTGGTT
1 ATTTTACCCTTCGGGGTATTTCGGTC
* *
1378197 ATTTTACCTTTCGAGGGTATTTCGATC
1 ATTTTACCCTTCG-GGGTATTTCGGTC
* *
1378224 ATTTTACCCTTTGAGGGTATTTCGATC
1 ATTTTACCCTTCG-GGGTATTTCGGTC
* * **
1378251 GTTTTACCCTTCGGTAGTATTTCAATC
1 ATTTTACCCTTCGG-GGTATTTCGGTC
*
1378278 ATTTTACCCTTCGAGGGTATTTCGATC
1 ATTTTACCCTTCG-GGGTATTTCGGTC
* *
1378305 ATTTTACCCTTTAGGGGTATTTTGGTC
1 ATTTTACCC-TTCGGGGTATTTCGGTC
*
1378332 ATTTTACCCTTCGAGGGTATTTCGATC
1 ATTTTACCCTTCG-GGGTATTTCGGTC
* *
1378359 ATTTTACCCTTTGAGGGTATTTCGGCC
1 ATTTTACCCTTCG-GGGTATTTCGGTC
* *
1378386 ATTTTACCCTTCGAGGTTATTTTGGTC
1 ATTTTACCCTTCG-GGGTATTTCGGTC
*
1378413 ATTTTACCCATCGGGGGTATTTCGGTC
1 ATTTTACCCTTC-GGGGTATTTCGGTC
1378440 ATT
1 ATT
1378443 CTAAGGCCCA
Statistics
Matches: 591, Mismatches: 91, Indels: 43
0.82 0.13 0.06
Matches are distributed among these distances:
26 47 0.08
27 528 0.89
28 16 0.03
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (26 bp):
ATTTTACCCTTCGGGGTATTTCGGTC
Found at i:1377841 original size:81 final size:80
Alignment explanation
Indices: 1377713--1378442 Score: 752
Period size: 81 Copynumber: 9.0 Consensus size: 80
1377703 TATATCAGTA
* * * *
1377713 ATTTTACCCTTC-AGGGTATTTC-AGTCATTTTACCTTTCAGGGGTATTTCGGTCATTTTACCTT
1 ATTTTACCCTTCGAGGGTATTTCGA-TCATTTTACCCTTGA-GGGTATTTCGATCATTTTACCCT
* *
1377776 TTGGGGGTATTTTGGTC
64 TCGGGGGTATTTCGGTC
* * *
1377793 ATTTTACCCATCG-GAGGTATTTCGATCATTTTACCCATTGAGGCTATTTCGATCATTTTACCCA
1 ATTTTACCCTTCGAG-GGTATTTCGATCATTTTACCC-TTGAGGGTATTTCGATCATTTTACCCT
* *
1377857 TCAGGGGTATTTCGATC
64 TCGGGGGTATTTCGGTC
*** *
1377874 ATTTTACGAGTCGAGGGTATTTCGATCATTTTACCCTTCGGGGGTATTTCGATCATTTTACCCTT
1 ATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTT-GAGGGTATTTCGATCATTTTACCCTT
* **
1377939 TGGGGGTATTTCAATC
65 CGGGGGTATTTCGGTC
* * * * * *
1377955 ATTTTACCCTTCGGGGGTATTT-TAGTCATTTTACCATTCGACGGTATTTCGATTATTTTACCCA
1 ATTTTACCCTTCGAGGGTATTTCGA-TCATTTTACCCTT-GAGGGTATTTCGATCATTTTACCCT
** **
1378019 TCGATGGTATTTTAGTC
64 TCGGGGGTATTTCGGTC
* * * * * *
1378036 ATTTTACCCATCGGGGGAATTTC-AGTGATTTTACCCTTTGAGGGTATTTCGATCATATTACCTT
1 ATTTTACCCTTCGAGGGTATTTCGA-TCATTTTACCC-TTGAGGGTATTTCGATCATTTTACCCT
*
1378100 TCGGGGGTATTTCGGTT
64 TCGGGGGTATTTCGGTC
* * * * *
1378117 ATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCAT
1 ATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTT-GAGGGTATTTCGATCATTTTACCCTT
* * *
1378182 C-AGGGTATTTTGGTT
65 CGGGGGTATTTCGGTC
* *
1378197 ATTTTACCTTTCGAGGGTATTTCGATCATTTTACCCTTTGAGGGTATTTCGATCGTTTTACCCTT
1 ATTTTACCCTTCGAGGGTATTTCGATCATTTTACCC-TTGAGGGTATTTCGATCATTTTACCCTT
** **
1378262 CGGTAGTATTTCAATC
65 CGGGGGTATTTCGGTC
* * *
1378278 ATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTTAGGGGTATTTTGGTCATTTTACCCTT
1 ATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTGA-GGGTATTTCGATCATTTTACCCTT
* *
1378343 CGAGGGTATTTCGATC
65 CGGGGGTATTTCGGTC
* ** * * * *
1378359 ATTTTACCCTTTGAGGGTATTTCGGCCATTTTACCCTTCGAGGTTATTTTGGTCATTTTACCCAT
1 ATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTT-GAGGGTATTTCGATCATTTTACCCTT
1378424 CGGGGGTATTTCGGTC
65 CGGGGGTATTTCGGTC
1378440 ATT
1 ATT
1378443 CTAAGGCCCA
Statistics
Matches: 542, Mismatches: 93, Indels: 29
0.82 0.14 0.04
Matches are distributed among these distances:
80 88 0.16
81 446 0.82
82 8 0.01
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (80 bp):
ATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTGAGGGTATTTCGATCATTTTACCCTTC
GGGGGTATTTCGGTC
Found at i:1380728 original size:17 final size:17
Alignment explanation
Indices: 1380706--1380738 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1380696 CACTAACATG
*
1380706 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
1380723 AAAATGCAATGACAAT
1 AAAATGCAATGACAAT
1380739 GTGTACTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:1392599 original size:49 final size:49
Alignment explanation
Indices: 1392546--1392949 Score: 701
Period size: 49 Copynumber: 8.3 Consensus size: 49
1392536 ATGTGAATGT
* *
1392546 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGA
1 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGA
1392595 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGA
1 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGA
1392644 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGA
1 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGA
1392693 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGA
1 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGA
1392742 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGA
1 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGA
1392791 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGA
1 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGA
1392840 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-
1 ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGA
* * * *
1392888 -TATATATGTGA-CAGAGCCGAGTGGCCAACGTGATGGATGTGAAAGTG-
1 ATATATATGTGATAAG-GCCGAATGGCCAATGTGATGAATGTGAAAGTGA
*
1392935 -TATAAATGTGATAAG
1 ATATATATGTGATAAG
1392950 TCCCGAAGGG
Statistics
Matches: 345, Mismatches: 8, Indels: 5
0.96 0.02 0.01
Matches are distributed among these distances:
46 2 0.01
47 50 0.14
48 2 0.01
49 291 0.84
ACGTcount: A:0.36, C:0.08, G:0.29, T:0.27
Consensus pattern (49 bp):
ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGA
Found at i:1412588 original size:33 final size:34
Alignment explanation
Indices: 1412551--1412622 Score: 110
Period size: 33 Copynumber: 2.1 Consensus size: 34
1412541 GAGTTAGTTT
*
1412551 ATTAAATTTAGTTCAGCTCAAATAAGTGTTAG-A
1 ATTAAATTTAGTTCAACTCAAATAAGTGTTAGTA
* *
1412584 ATTAATTTTAGTTCAACTTAAATAAGTGTTAGTA
1 ATTAAATTTAGTTCAACTCAAATAAGTGTTAGTA
1412618 ATTAA
1 ATTAA
1412623 TTTGTTTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
33 29 0.83
34 6 0.17
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (34 bp):
ATTAAATTTAGTTCAACTCAAATAAGTGTTAGTA
Found at i:1430981 original size:40 final size:40
Alignment explanation
Indices: 1430934--1431014 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
1430924 TAACGGGAGT
1430934 AAGCGTAAAGCTTAGTAAGTTTCAAAGAAAATAAATAACA
1 AAGCGTAAAGCTTAGTAAGTTTCAAAGAAAATAAATAACA
1430974 AAGCGTAAAGCTTAGTAAGTTTCAAAGAAAATAAATAACA
1 AAGCGTAAAGCTTAGTAAGTTTCAAAGAAAATAAATAACA
1431014 A
1 A
1431015 CATTTATCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.53, C:0.10, G:0.15, T:0.22
Consensus pattern (40 bp):
AAGCGTAAAGCTTAGTAAGTTTCAAAGAAAATAAATAACA
Found at i:1434179 original size:16 final size:16
Alignment explanation
Indices: 1434158--1434189 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1434148 TATTCATCTC
*
1434158 ATTTTCATTTAAGTAA
1 ATTTTCATCTAAGTAA
1434174 ATTTTCATCTAAGTAA
1 ATTTTCATCTAAGTAA
1434190 TTAATTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (16 bp):
ATTTTCATCTAAGTAA
Found at i:1442083 original size:17 final size:19
Alignment explanation
Indices: 1442049--1442083 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1442039 ATTTTATAAA
1442049 TTATAAATTATAATACATT
1 TTATAAATTATAATACATT
1442068 TTATAAA-TAT-ATACAT
1 TTATAAATTATAATACAT
1442084 ATATTAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (19 bp):
TTATAAATTATAATACATT
Found at i:1442454 original size:12 final size:13
Alignment explanation
Indices: 1442424--1442455 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
1442414 AAATTTAAAC
1442424 AATATTACAAATA
1 AATATTACAAATA
1442437 AATATTACAAAT-
1 AATATTACAAATA
1442449 AATATTA
1 AATATTA
1442456 AATACTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.34
Consensus pattern (13 bp):
AATATTACAAATA
Found at i:1444018 original size:50 final size:50
Alignment explanation
Indices: 1443922--1444057 Score: 168
Period size: 50 Copynumber: 2.7 Consensus size: 50
1443912 AAATGTGATG
** *
1443922 TCGGGGAAGCAAGATTCACCATTGTAGCTTTAAT-TTGTTCCGCTGCAATA
1 TCGGGGAAGCAAGATTCACTGTTGTAGCTTTAATCTTCTT-CGCTGCAATA
* * *
1443972 TCTGGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTCTT-GACTGCAATG
1 TCGGGGAAGCAAGATTCACTGTTGTAGCTTTAATCTTCTTCG-CTGCAATA
* *
1444022 TCGGGGAAGCAAGATTCGCTGTTGTGGCTTTAATCT
1 TCGGGGAAGCAAGATTCACTGTTGTAGCTTTAATCT
1444058 GCTCCACTAC
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 69 0.93
51 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (50 bp):
TCGGGGAAGCAAGATTCACTGTTGTAGCTTTAATCTTCTTCGCTGCAATA
Found at i:1444234 original size:44 final size:44
Alignment explanation
Indices: 1444181--1448404 Score: 843
Period size: 44 Copynumber: 96.8 Consensus size: 44
1444171 CCTTTATTTT
* *
1444181 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
1444225 AATCTGCTCCGCTGTAATCTCAGGGAGATAACAATTGCAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAA-GATTACTA-GCTTC
* ** * * * * *
1444271 GATCTATTCCATTGTAATCTCAGGGACATAAG---ACTTGATTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * ** *
1444312 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGA-TACTATATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTA-GCTTC
* * * * * * *
1444356 AATCCGTTCCACTGTAATCTTAGGGAAATAGGATTACTGGCTTA
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
1444400 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCA-ATTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATT-ACTAGCTTC
* * ** * *
1444444 AGAT-TAGCTCCACTAT-TTCTTTGGGAGATAAGATCTGGAAT-TCTTC
1 A-ATCT-GCTCCACTGTAATCTCAGGGAGATAAGAT-T--ACTAGCTTC
** ** * * *
1444490 GGTCTATTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * * ** *
1444531 GATCTACTCTACTGTAATTTCAGAGAGATAAGA-TCCTTTCTTTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGC-TTC
* * * * *
1444575 AATCTGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
1444619 AATCTGCTCCGCTATAATCTCAGGGAGATAAGATCT-CATATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TAC-TA-GCTTC
** ** * * *
1444665 GGTCTATTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * * * * *
1444706 GATCTACTCTACAGTAA-CTTCAGAGAAATAAGATCCT-TTA-TTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * * *
1444750 AAT-TCGTTCCACTGTAATCAT-AGGGAAATAGGATTACTGGCTTC
1 AATCT-GCTCCACTGTAATC-TCAGGGAGATAAGATTACTAGCTTC
* * * * *
1444794 AATCTGCTCCGCTGTAATCTCAGGGAGATAACAATTGCAATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAA-GATTACTA-GCTTC
* ** * * * * *
1444840 GATCTATTCCATTGTAATCTCAGGGACATAAG---ACTTGATTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * ** *
1444881 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGA-TACTATATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTA-GCTTC
* * * * * * *
1444925 AATCCGTTCCACTGTAATCTTAGGGAAATAGGATTACTGGCTTA
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
1444969 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCA-ATTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATT-ACTAGCTTC
* * ** * *
1445013 AGAT-TAGCTCCACTAT-TTCTTTGGGAGATAAGATCTGGAAT-TCTTC
1 A-ATCT-GCTCCACTGTAATCTCAGGGAGATAAGAT-T--ACTAGCTTC
** ** * * *
1445059 GGTCTATTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * * ** *
1445100 GATCTACTCTACTGTAATTTCAGAGAGATAAGA-TCCTTTCTTTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGC-TTC
* * * * *
1445144 AATCTGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
1445188 AATCTGCTCCGCTATAATCTCAGGGAGATAAGATCT-CATATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TAC-TA-GCTTC
** ** * * *
1445234 GGTCTATTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * * ** *
1445275 GATCTACTCTACTGTAATTTCAGAGAGATAAGA-TCCTTTCTTTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGC-TTC
* * * * *
1445319 AATCTGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
1445363 AATCTGCTCCGCTATAATCTCAGGGAGATAAGATCT-CATATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TAC-TA-GCTTC
** ** * * *
1445409 GGTCTATTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATAC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
1445450 GATCTGCTCTACTGTAA-CTTCA--GAGATAAGATCCT-TTA-TTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* *
1445492 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * **
1445536 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATTTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATT-ACTAGCTTC
* * * * * * *
1445581 GAT-TAGCTCTAC--TATTGCTTAGAGAGATAAGA-T-CTGGAATTC
1 AATCT-GCTCCACTGTAAT-CTCAGGGAGATAAGATTACTAG-CTTC
* ** * ** * * *
1445623 TTAGGTCTATTCCACAGTAATCTCAATGAGATAAGA--CCT-GATGC
1 --A-ATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * * * *
1445667 GATATACTCTACTGTAA-CTTCAGAGAGATAAGA-TCCT-GTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTAG--CTTC
* * * * * *
1445711 AATCCGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
1445755 AATCTGCTCCGCTATAATCTCAGGGAGATAAGATCT-CATATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TAC-TA-GCTTC
** ** * * *
1445801 GGTCTATTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * * ** *
1445842 GATCTACTCTACTGTAATTTCAGAGAGATAAGA-TCCTTTCTTTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGC-TTC
* * * * *
1445886 AATCTGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
1445930 AATCTGCTCCGCTATAATCTCAGGGAGATAAGATCT-CATATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TAC-TA-GCTTC
** ** * * *
1445976 GGTCTATTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * * **
1446017 GATCTACTCTACTGTAA-CTTTAGAGAGATAAGATCCT-TTATTTTC
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * *
1446062 -ATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
1446105 AATTTACTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
1446149 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATT-ACTAGCTTC
* * * * * ** *
1446194 GATCTGCTCCGC--TATTGCTCAAGGAGACAAGATCTAGAACTCTTC
1 AATCTGCTCCACTGTAAT-CTCAGGGAGATAAGAT-TACTA-GCTTC
** ** * *
1446239 GGTCTATTCCACTGTAAGCTCAGGGGGATAAGACCTTA-T-G---C
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGA--TTACTAGCTTC
* * * * ** *
1446280 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGA-TACTATATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTACTA-GCTTC
* * * * * *
1446324 AATCCGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
1446368 AATCTGCTCCGCTATAATCTCAGGGAGATAAGATCT-CATATTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TAC-TA-GCTTC
** ** * * *
1446414 GGTCTATTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * **
1446455 GATCTACTCTACTGTAA-CTTAAGAGAGATAAGATT-CTTTATTTTC
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTAC--TAGCTTC
* * * * * *
1446500 -ATCTACTCCACTATAATATCAGGGAAATAGGATTACTTGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
1446543 AATTTTCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * ** *
1446587 AATCTGCTCCGCTGTAATCTTAAAGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
1446631 AATCTGCTCTACTGTAATCTTATGGAGATAAGATTCAC-CGTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATT-ACTAG-CTTC
* * * * *
1446676 GATCTTCTCCAC--TATTGCTCAAGGAGACAAGATCTGGAACT--CTTC
1 AATCTGCTCCACTGTAAT-CTCAGGGAGATAAGAT-T---ACTAGCTTC
* ** * * * * *
1446721 GATCTATTCCACAGTAATCTCAGGGAGAAAAGA--CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * * * *
1446762 GATCTACTCTACTGTAA-CTTCAGAGAGATAATATCCT-TTA-TTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * *
1446806 AATCTGTTCCACTGTAATCTCAGGGTA-ATAGGATTACTAGCTTT
1 AATCTGCTCCACTGTAATCTCAGGG-AGATAAGATTACTAGCTTC
* * * * ** *
1446850 AATCTGTTCCACTATAATCTCAGGGAGATCAGATTCACCATTTTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATT-ACTAGCTTC
* * * * * * *
1446895 TAT-TAGCTCCACTAT-TTTTTAGGGAGATAATATCTGGATTTA--TTC
1 AATCT-GCTCCACTGTAATCTCAGGGAGATAAGAT-T--A-CTAGCTTC
* ** * * *
1446940 AGTCTATTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * **
1446981 GATCTACTCTACTGTAA-CTTAAGAGAGATAAGATT-CTTTATTTTC
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTAC--TAGCTTC
* * * * * *
1447026 -ATCTACTCCACTATAATATCAGGGAAATAGGATTACTTGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
1447069 AATTTTCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * *
1447113 ATTCTGCTCCGCTGTAATCTTATGAAGATAAGATTCAC-CGTCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATT-ACTAG-CTTC
* * * * *
1447158 GATCTGCTCTAC--TATTGCTCAGGGAGACAAGA-T-CTGGAACTTTC
1 AATCTGCTCCACTGTAAT-CTCAGGGAGATAAGATTACT--AGC-TTC
** ** * * *
1447202 TGTCTATTCCACTGTAATCTCAGGGAGATAAGA--CCTA-ATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * * *
1447243 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * * * *
1447287 AATCCGTTCCACTGTAATCTCAGGGAGATAAGA--CCTA-ATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * * *
1447328 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * * * *
1447372 AATCCGTTCCACTGTAATCTCAGGGAGATAAGA--CCTA-ATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * * *
1447413 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * * * *
1447457 AATCCGTTCCACTGTAATCTCAGGGAGATAAGA--CCTA-ATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * * *
1447498 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTC
* * *
1447542 AATCCGTTCCACTGTAATCTCAGGGTA-ATAGGATTACTAGCATT-
1 AATCTGCTCCACTGTAATCTCAGGG-AGATAAGATTACTAGC-TTC
* * * * * ** *
1447586 AATATGCTCCGCTATAATCTCAGGGAGATCAGATTCACCATTTTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATT-ACTAGCTTC
* * * * * * *
1447631 TAT-TAGCTCCACTAT-TTTTTAGGGAGATAATATCTGGATTTA--TTC
1 AATCT-GCTCCACTGTAATCTCAGGGAGATAAGAT-T--A-CTAGCTTC
* ** * * *
1447676 AGTCTATTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *** * * * **
1447717 GATCTACAGTACTGTAA-CTATAGAGAGATAAG-TTCCTTTATTTTC
1 AATCTGCTCCACTGTAATCT-CAGGGAGATAAGATTAC--TAGCTTC
* * * * * * *
1447762 -ATCCGTTCCACTGTAATATCAGGGAAATAGGATTACTGGCTTT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
1447805 AATTTGCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * ** *
1447849 AATCTGCTCCGCTGTAATCTTAAAGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * *
1447893 AATCTGCTCTACTGTAATCTTATGGAGATAAGATTCACCATCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATT-ACTAGCTTC
* * * ** *
1447938 GATCTGCTCCAC--TATTGCTCAGGGAGACAAGATCTGGTACTCTTC
1 AATCTGCTCCACTGTAAT-CTCAGGGAGATAAGAT-TACTA-GCTTC
** ** * * *
1447983 GGTCTATTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * *
1448024 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGATT-CTTTA-TTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTAC--TAGCTTC
* * * * * * *
1448068 TATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGTTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
1448112 AATTTGCTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * *
1448153 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGATT-CTTTA-TTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTAC--TAGCTTC
* * * * * * *
1448197 TATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGTTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * *
1448241 AATTTGCTCCACTGTAATCTCAGGGAGATAAGA--CCT-GATGC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * * * * *
1448282 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGATT-CTTTA-TTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGATTAC--TAGCTTC
* * * * * * *
1448326 TATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGTTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
*
1448370 AATTTGCTCCACTGTAATCTCAGGGAGATAAGATT
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATT
1448405 CACCATTTTC
Statistics
Matches: 2995, Mismatches: 904, Indels: 562
0.67 0.20 0.13
Matches are distributed among these distances:
38 2 0.00
39 10 0.00
40 23 0.01
41 605 0.20
42 56 0.02
43 62 0.02
44 1528 0.51
45 329 0.11
46 362 0.12
47 17 0.01
48 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
Found at i:1444389 original size:175 final size:173
Alignment explanation
Indices: 1444103--1444430 Score: 512
Period size: 175 Copynumber: 1.9 Consensus size: 173
1444093 TTCTTTGGTC
* *
1444103 ATTCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCTGCTCTACTGTAACTTCAGAGATAA
1 ATTCCACTGTAATCTCAGGGACATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGATAA
* * * *
1444168 GATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCT
66 GATACTATATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTAAATCTGCT
1444233 CCGCTGTAATCTCAGGGAGATAACAATTGCAATTCTTCGATCT
131 CCGCTGTAATCTCAGGGAGATAACAATTGCAATTCTTCGATCT
* * **
1444276 ATTCCATTGTAATCTCAGGGACATAAGACTTGATTTGATCTACTCTACTGTAACTTCAGAGAGAT
1 ATTCCACTGTAATCTCAGGGACATAAGACCTGATACGATCTACTCTACTGTAACTTC--AGAGAT
* * *
1444341 AAGATACTATATTTTAATCCGTTCCACTGTAATCTTAGGGAAATAGGATTACTGGCTTAAATCTG
64 AAGATACTATATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTAAATCTG
*
1444406 CTCCGCTGTAATCTTAGGGAGATAA
129 CTCCGCTGTAATCTCAGGGAGATAA
1444431 GATTCACCAA
Statistics
Matches: 139, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
173 51 0.37
175 88 0.63
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (173 bp):
ATTCCACTGTAATCTCAGGGACATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGATAA
GATACTATATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTAAATCTGCT
CCGCTGTAATCTCAGGGAGATAACAATTGCAATTCTTCGATCT
Found at i:1444547 original size:175 final size:176
Alignment explanation
Indices: 1444366--1445002 Score: 632
Period size: 175 Copynumber: 3.6 Consensus size: 176
1444356 AATCCGTTCC
* * * *
1444366 ACTGTAATCTT-AGGGAAATAGGATTACTGGC-TTAAATCTGCTCCGCTGTAATCTTAGGGAGAT
1 ACTGTAATCTTCAGAGAAATAAGA-TACTGGCTTTAAATCTGCTCCACTGTAATCTTAGGGAAAT
* * ** *
1444429 AAGATTCACCA-ATTTAGAT-TAGCTCCACTAT-TTCTTTGGGAGATAAGATCTGGA-ATTCTTC
65 AAGATT-ACCAGATTCA-ATCT-GCTCCACTATAATCTCAGGGAGATAAGATCT-CATATTCTTC
1444490 GGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
126 GGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
* * ** * *
1444541 ACTGTAAT-TTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAATCTTAGGGAAATA
1 ACTGTAATCTTCAGAGAAATAAGATACTGGCTTTAAATCTGCTCCACTGTAATCTTAGGGAAATA
* * *
1444605 GGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTCATATTCTTCGGTCT
66 AGATTACCAGATTCAATCTGCTCCACTATAATCTCAGGGAGATAAGATCTCATATTCTTCGGTCT
1444670 ATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
131 ATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
* * *** * * *
1444716 ACAGTAA-CTTCAGAGAAATAAGATCCTTTATTTTAAT-TCGTTCCACTGTAATCATAGGGAAAT
1 ACTGTAATCTTCAGAGAAATAAGATACTGGCTTTAAATCT-GCTCCACTGTAATCTTAGGGAAAT
* ** * * * * *
1444779 AGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAACAAT-TGCA-ATTCTTCGA
65 AAGATTACCAGATTCAATCTGCTCCACTATAATCTCAGGGAGATAA-GATCT-CATATTCTTCGG
* * * **
1444842 TCTATTCCATTGTAATCTCAGGGACATAAGACTTGATTTGATCTACTCT
128 TCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
* *** * * *
1444891 ACTGTAA-CTTCAGAGAGATAAGATACTATATTTTAATCCGTTCCACTGTAATCTTAGGGAAATA
1 ACTGTAATCTTCAGAGAAATAAGATACTGGCTTTAAATCTGCTCCACTGTAATCTTAGGGAAATA
* ** * * * * *
1444955 GGATTACTGGCTTAAATCTGCTCCGCTGTAATCTTAGGGAGATAAGAT
66 AGATTACCAGATTCAATCTGCTCCACTATAATCTCAGGGAGATAAGAT
1445003 TCACCAATTT
Statistics
Matches: 410, Mismatches: 41, Indels: 23
0.86 0.09 0.05
Matches are distributed among these distances:
174 24 0.06
175 382 0.93
176 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (176 bp):
ACTGTAATCTTCAGAGAAATAAGATACTGGCTTTAAATCTGCTCCACTGTAATCTTAGGGAAATA
AGATTACCAGATTCAATCTGCTCCACTATAATCTCAGGGAGATAAGATCTCATATTCTTCGGTCT
ATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
Found at i:1444784 original size:394 final size:394
Alignment explanation
Indices: 1444054--1445266 Score: 1363
Period size: 394 Copynumber: 3.1 Consensus size: 394
1444044 TGTGGCTTTA
* * * * * *
1444054 ATCTGCTCCACTACATTATCTGGGAGATAAGGTCTAAAATTCTTTGGTC-ATTCCACTGTAATCT
1 ATCTACTCCACTATAATCTCTGGGAGATAAGATCTAGAATTC-TTGGTCTATTCCACTGTAATCT
* *
1444118 CAGGGAGATAAGACCTGATACGATCTGCTCTACTGTAACTTC--AGAGATAAGATCCTTTATTTT
65 CAGGGAGATAAGACCTGATACGATCTGCTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTT
* * * *
1444181 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
130 AATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTC
* * * * *
1444246 AGGGAGATAACAAT-TGCAATTCTTCGATCTATTCCATTGTAATCTCAGGGACATAAGACTTGAT
195 AGGGAGATAA-GATCTGCAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGAT
** * * *
1444310 TTGATCTACTCTACTGTAACTTCAGAGAGATAAGATACTATATTTTAATCCGTTCCACTGTAATC
259 GCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGTTCCACTGTAATC
* *
1444375 TTAGGGAAATAGGATTACTGGCTTAAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATT-CACC
324 TTAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTGCA--
1444439 AAT-TTAG
387 AATCTTAG
* * *
1444446 AT-TAGCTCCACTAT-TTCTTTGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATC
1 ATCTA-CTCCACTATAATCTCTGGGAGATAAGATCTAGAATTCTT-GGTCTATTCCACTGTAATC
* *
1444509 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTT
64 TCAGGGAGATAAGACCTGATACGATCTGCTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTT
* *
1444574 TAATCTGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCT
129 TAATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGATTCAATCTGCTCCGCTATAATCT
1444639 CAGGGAGATAAGATCT-CATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGA
194 CAGGGAGATAAGATCTGCA-ATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGA
* *
1444703 TGCGATCTACTCTACAGTAACTTCAGAGAAATAAGATCCTTTATTTTAATTCGTTCCACTGTAAT
258 TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGTTCCACTGTAAT
* *
1444768 CATAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAACAATTGCA
323 CTTAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAA-GATTGCA
* *
1444833 ATTCTTCG
387 AATCTTAG
* * * * * * * * *
1444841 ATCTATTCCATTGTAATCTCAGGGACATAAGA-CTTG-A-T-TTGATCTACTCTACTGTAA-CTT
1 ATCTACTCCACTATAATCTCTGGGAGATAAGATCTAGAATTCTTGGTCTATTCCACTGTAATC-T
* * ** * * * * * * * *
1444901 CAGAGAGATAAGATACT-ATATTTTAATCCGTTCCACTGTAATCTT-AGGGAAATAGGATTACTG
65 CAGGGAGATAAGA-CCTGATA---CGATCTGCTCTACTGTAAT-TTCAGAGAGATAAGA-TCCTT
* * * * * * *
1444964 GC-TTAAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCA-ATTTAGAT-TAGCTCCAC
124 TCTTTTAATCTGCTCCACTGTAATCTTAGGGAGATAGGATT-ACTAGATTCA-ATCT-GCTCCGC
* ** *
1445026 TAT-TTCTTTGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAA
186 TATAATCTCAGGGAGATAAGATCTGCAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAA
* *
1445090 GACCTGATGCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAA-TCTGTTCC
251 GACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTC-GTTCC
* * *
1445154 ACTGTAATCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAA
315 ACTGTAATCTTAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAA
* *
1445219 GATCT-CATATTCTTCG
380 GAT-TGCA-AATCTTAG
* * * *
1445235 GTCTATTCCACTGTAATCTCAGGGAGATAAGA
1 ATCTACTCCACTATAATCTCTGGGAGATAAGA
1445267 CCTGATGCGA
Statistics
Matches: 710, Mismatches: 85, Indels: 50
0.84 0.10 0.06
Matches are distributed among these distances:
390 3 0.00
391 56 0.08
392 68 0.10
393 11 0.02
394 517 0.73
395 38 0.05
396 17 0.02
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (394 bp):
ATCTACTCCACTATAATCTCTGGGAGATAAGATCTAGAATTCTTGGTCTATTCCACTGTAATCTC
AGGGAGATAAGACCTGATACGATCTGCTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTA
ATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
GGGAGATAAGATCTGCAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTCGTTCCACTGTAATCTT
AGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTGCAAATC
TTAG
Found at i:1445116 original size:175 final size:175
Alignment explanation
Indices: 1445035--1445569 Score: 932
Period size: 175 Copynumber: 3.1 Consensus size: 175
1445025 CTATTTCTTT
*
1445035 GGGAGATAAGATCTGGA-ATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
1 GGGAGATAAGATCT-CATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
1445099 CGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAATCT
65 CGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAATCT
1445164 TAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
130 TAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
1445210 GGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
1 GGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
1445275 GATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAATCTT
66 GATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAATCTT
1445340 AGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
131 AGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
*
1445385 GGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATAC
1 GGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
* * * * * *
1445450 GATCTGCTCTACTGTAACTTC--AGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
66 GATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAATCTT
* * * *
1445513 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTTA
131 AGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
1445558 GGGAGATAAGAT
1 GGGAGATAAGAT
1445570 TCACCATTTT
Statistics
Matches: 347, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
173 91 0.26
174 1 0.00
175 255 0.73
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (175 bp):
GGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
GATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAATCTT
AGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
Found at i:1445242 original size:569 final size:569
Alignment explanation
Indices: 1444075--1446139 Score: 3376
Period size: 569 Copynumber: 3.6 Consensus size: 569
1444065 TACATTATCT
* * * * *
1444075 GGGAGATAAGGTCTAAAATTCTTTGGTC-ATTCCACTGTAATCTCAGGGAGATAAGACCTGATAC
1 GGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
* * * *
1444139 GATCTGCTCTACTGTAACTTC--AGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
66 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTT
* * *
1444202 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAACAAT-TGCA-A
131 AGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAA-AATCT-CATA
* * *
1444265 TTCTTCGATCTATTCCATTGTAATCTCAGGGACATAAGACTTGATTTGATCTACTCTACTGTAAC
194 TTCTTCGATCTATTCCACTGTAATCTCAGGGACATAAGACCTGATTCGATCTACTCTACTGTAAC
* *
1444330 TTCAGAGAGATAAGATACTATATTTTAATCCGTTCCACTGTAATCTTAGGGAAATAGGATTACTG
259 TTCAGAGAGATAAGATACTATATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTG
1444395 GCTTAAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCAATTTAGATTAGCTCCACTAT
324 GCTTAAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCAATTTAGATTAGCTCCACTAT
1444460 TTCTTTGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACC
389 TTCTTTGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACC
1444525 TGATGCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGT
454 TGATGCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGT
1444590 AATCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
519 AATCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
1444641 GGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
1 GGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
* * *
1444706 GATCTACTCTACAGTAACTTCAGAGAAATAAGATCCTTTATTTTAAT-TCGTTCCACTGTAATCA
66 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCT-GTTCCACTGTAATCT
* * *
1444770 TAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAACAAT-TGCA-
130 TAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAA-AATCT-CAT
* * *
1444833 ATTCTTCGATCTATTCCATTGTAATCTCAGGGACATAAGACTTGATTTGATCTACTCTACTGTAA
193 ATTCTTCGATCTATTCCACTGTAATCTCAGGGACATAAGACCTGATTCGATCTACTCTACTGTAA
* *
1444898 CTTCAGAGAGATAAGATACTATATTTTAATCCGTTCCACTGTAATCTTAGGGAAATAGGATTACT
258 CTTCAGAGAGATAAGATACTATATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACT
1444963 GGCTTAAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCAATTTAGATTAGCTCCACTA
323 GGCTTAAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCAATTTAGATTAGCTCCACTA
1445028 TTTCTTTGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGAC
388 TTTCTTTGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGAC
1445093 CTGATGCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTG
453 CTGATGCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTG
1445158 TAATCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
518 TAATCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
1445210 GGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
1 GGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
* *
1445275 GATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAATCTT
66 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTT
*
1445340 AGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTCATATT
131 AGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAAAATCTCATATT
* * * *
1445405 CTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCTGCTCTACTGTAACTT
196 CTTCGATCTATTCCACTGTAATCTCAGGGACATAAGACCTGATTCGATCTACTCTACTGTAACTT
* * * *
1445470 C--AGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGC
261 CAGAGAGATAAGATACTATATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGC
* * * * *
1445533 TTCAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATTTTCGATTAGCTCTACTATTG
326 TTAAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCAATTTAGATTAGCTCCACTATTT
* * * * **
1445598 CTTAGAGAGATAAGATCTGGAATTCTTAGGTCTATTCCACAGTAATCTCAATGAGATAAGACCTG
391 CTTTGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTG
* * * * *
1445663 ATGCGATATACTCTACTGTAACTTCAGAGAGATAAGATCCTGTATTTTAATCCGTTCCACTGTAA
456 ATGCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAA
1445728 TCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
521 TCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
1445777 GGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
1 GGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
* *
1445842 GATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAATCTT
66 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTT
*
1445907 AGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTCATATT
131 AGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAAAATCTCATATT
* * *
1445972 CTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTT
196 CTTCGATCTATTCCACTGTAATCTCAGGGACATAAGACCTGATTCGATCTACTCTACTGTAACTT
* * * * *
1446037 TAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGC
261 CAGAGAGATAAGATACTATATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGC
* * * * *
1446102 TTCAATTTACTCCGCTGTAATCTCAGGGAGATAGGATT
326 TTAAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATT
1446140 ACTGGCTTCA
Statistics
Matches: 1427, Mismatches: 63, Indels: 15
0.95 0.04 0.01
Matches are distributed among these distances:
566 24 0.02
567 596 0.42
568 4 0.00
569 802 0.56
570 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (569 bp):
GGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGC
GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTT
AGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAAAATCTCATATT
CTTCGATCTATTCCACTGTAATCTCAGGGACATAAGACCTGATTCGATCTACTCTACTGTAACTT
CAGAGAGATAAGATACTATATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGC
TTAAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCAATTTAGATTAGCTCCACTATTT
CTTTGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTG
ATGCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAA
TCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCA
Found at i:1445281 original size:394 final size:395
Alignment explanation
Indices: 1444181--1446577 Score: 1953
Period size: 394 Copynumber: 6.1 Consensus size: 395
1444171 CCTTTATTTT
* * * * * * *
1444181 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATT-ACT-AGCTTCAATCT-GCTCCGCTGTAAT
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAATCTTCGATCTAGCTCCACTATAAT
* * * *
1444243 CTCAGGGAGATAACAAT-TGCAATTCTTCGATCTATTCCATTGTAATCTCAGGGACATAAGACTT
66 CTCAGGGAGATAA-GATCTG-AATTCTTCGATCTATTCCACTGTAATCTCAGGGAGATAAGACCT
** *
1444307 GATTTGATCTACTCTACTGTAACTTCAGAGAGATAAGATACTATATTTTAATCCGTTCCACTGTA
129 GATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATACTATATTTTAATCTGTTCCACTGTA
* * * *
1444372 ATCTTAGGGAAATAGGATTACTGGCTTAAATCTGCTCCGCTGTAATCTTAGGGAGATAAGAT-TC
194 ATCTTAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTC
* * * * * * ** * * * *
1444436 ACCAAT-TTAGAT-TAGCTCCACTAT-TTCTTTGGGAGATAAGATCTGGAATTCTTCGGTCTATT
259 A-TATTCTTCGATCTA-TTCCACTGTAATCTCAGGGAGATAAGACCT-G-A---TGCGATCTACT
* * * *** * * *
1444498 CCACTGTAA-TCTCAGGGAGATAAGA-CCTGA-TGCGATCTACTCTACTGTAAT-TTCAGAGAGA
317 CTACTGTAACT-TCAGAGAGATAAGATCCTTATTTTAATCTACTCCACTGTAATCTT-AGGGAAA
* * ** *
1444559 TAAGA-TCCTTTCTTTT
380 TAGGATTACTAGC-TTC
* * * * * * *
1444575 AATCTGTTCCACTGTAATCTTAGGGAAATAGGATT-ACTAGA--TTCAATCT-GCTCCGCTATAA
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTA-ATCTTCGATCTAGCTCCACTATAA
* *
1444636 TCTCAGGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCT
65 TCTCAGGGAGATAAGATCTGA-ATTCTTCGATCTATTCCACTGTAATCTCAGGGAGATAAGACCT
* * * *
1444701 GATGCGATCTACTCTACAGTAACTTCAGAGAAATAAGATCCTTTATTTTAAT-TCGTTCCACTGT
129 GATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATACTATATTTTAATCT-GTTCCACTGT
* * * *
1444765 AATCATAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAACAAT-
193 AATCTTAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAA-GATC
* * * **
1444829 TGCA-ATTCTTCGATCTATTCCATTGTAATCTCAGGGACATAAGACTTGATTTGATCTACTCTAC
257 T-CATATTCTTCGATCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
* ***
1444893 TGTAACTTCAGAGAGATAAGATACTATATTTTAATCCGTTCCACTGTAATCTTAGGGAAATAGGA
321 TGTAACTTCAGAGAGATAAGATCCT-TATTTTAATCTACTCCACTGTAATCTTAGGGAAATAGGA
* *
1444958 TTACTGGCTTA
385 TTACTAGCTTC
* * * *
1444969 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCAAT-TTAGAT-TAGCTCCACTAT-TT
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAATCTTCGATCTAGCTCCACTATAAT
** *
1445031 CTTTGGGAGATAAGATCTGGAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTG
66 CTCAGGGAGATAAGATCT-GAATTCTTCGATCTATTCCACTGTAATCTCAGGGAGATAAGACCTG
* * * *
1445096 ATGCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAA
130 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATACTATATTTTAATCTGTTCCACTGTAA
*
1445161 TCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTCA
195 TCTTAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTCA
*
1445226 TATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTA
260 TATTCTTCGATCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTA
* * **
1445291 ATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAATCTTAGGGAAATAGGATTAC
325 ACTTCAGAGAGATAAGATCC-TTATTTTAATCTACTCCACTGTAATCTTAGGGAAATAGGATTAC
*
1445356 TAGATTC
389 TAGCTTC
* * * * *
1445363 AATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTCA-TATTCTTCGGTCTA-TTCCACTGTAA
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT-TCACTAATCTTCGATCTAGCTCCACTATAA
* * ** *
1445426 TCTCAGGGAGATAAGACCTG-A---TACGATCTGCTCTACTGTAA-CTTCA--GAGATAAGATCC
65 TCTCAGGGAGATAAGATCTGAATTCTTCGATCTATTCCACTGTAATC-TCAGGGAGATAAGA-CC
* *** ** * * * ** * * *
1445484 TTTATTTTAATCCGCTCCACTGTAA-TCTCAGGGAGATAGGATTACTA-GCTTCAATCTGCTCCG
128 -TGA-TGCGATCTACTCTACTGTAACT-TCAGAGAGATAAGA-TACTATATTTTAATCTGTTCCA
* * * ** * ** * *
1445547 CTGTAATCTTAGGGAGATAAGATTCACCATTTTCGAT-TAGCTCTACTAT--TGCTTAGAGAGAT
189 CTGTAATCTTAGGGAAATAGGATT-ACTAGCTTCAATCT-GCTCCGCTATAAT-CTCAGGGAGAT
* * * * ** *
1445609 AAGATCTGGA-ATTCTTAGGTCTATTCCACAGTAATCTCAATGAGATAAGACCTGATGCGATATA
251 AAGATCT-CATATTCTTCGATCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTA
***
1445673 CTCTACTGTAACTTCAGAGAGATAAGATCCTGTATTTTAATCCGTTCCACTGTAATCTTAGGGAA
315 CTCTACTGTAACTTCAGAGAGATAAGATCCT-TATTTTAATCTACTCCACTGTAATCTTAGGGAA
*
1445738 ATAGGATTACTAGATTC
379 ATAGGATTACTAGCTTC
* * * * *
1445755 AATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTCA-TATTCTTCGGTCTA-TTCCACTGTAA
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT-TCACTAATCTTCGATCTAGCTCCACTATAA
* * * * * *
1445818 TCTCAGGGAGATAAGACCTG-A---TGCGATCTACTCTACTGTAATTTCAGAGAGATAAGATCCT
65 TCTCAGGGAGATAAGATCTGAATTCTTCGATCTATTCCACTGTAATCTCAGGGAGATAAGA-CC-
** *** ** * * * * * * * *
1445879 TTCTTTTAATCTGTTCCACTGTAATCTT-AGGGAAATAGGATTACTAGA-TTCAATCTGCTCCGC
128 -TGATGCGATCTACTCTACTGTAA-CTTCAGAGAGATAAGA-TACTATATTTTAATCTGTTCCAC
* * * * * ** ** * *
1445942 TATAATCTCAGGGAGATAAGATCT-CATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATA
190 TGTAATCTTAGGGAAATAGGAT-TAC-TA-GCTTCAATCTGCTCCGCTATAATCTCAGGGAGATA
* * * * * * *
1446006 AGA-C-C-TGA---TGCGATCTACTCTACTGTAA-CTTTAGAGAGATAAGATCCTTTATTTTC-A
252 AGATCTCAT-ATTCTTCGATCTATTCCACTGTAATC-TCAGGGAGATAAGA-CC-TGA--TGCGA
* * * * * * *** * * * *
1446063 TCTGCTCCACTGTAA-TCTCAGGGAAATAGGATTACTGGCTTCAATTTACTCCGCTGTAATCTCA
311 TCTACTCTACTGTAACT-TCAGAGAGATAAGA-TCCTTATTTTAATCTACTCCACTGTAATCTTA
* *
1446127 GGGAGATAGGATTACTGGCTTC
374 GGGAAATAGGATTACTAGCTTC
* * *
1446149 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCAC-CATCTTCGATCT-GCTCCGCTAT--T
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAATCTTCGATCTAGCTCCACTATAAT
* * * * * *
1446210 GCTCAAGGAGACAAGATCTAGAACTCTTCGGTCTATTCCACTGTAAGCTCAGGGGGATAAGACCT
66 -CTCAGGGAGATAAGATCT-GAATTCTTCGATCTATTCCACTGTAATCTCAGGGAGATAAGACCT
* *
1446275 TATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATACTATATTTTAATCCGTTCCACTGTA
129 GATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATACTATATTTTAATCTGTTCCACTGTA
*
1446340 ATCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTC
194 ATCTTAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTC
*
1446405 ATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGT
259 ATATTCTTCGATCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGT
* * * * * *
1446470 AACTTAAGAGAGATAAGATTCTTTATTTTCATCTACTCCACTATAATATCAGGGAAATAGGATTA
324 AACTTCAGAGAGATAAGA-TCCTTATTTTAATCTACTCCACTGTAATCTTAGGGAAATAGGATTA
*
1446535 CTTGCTTC
388 CTAGCTTC
* * *
1446543 AATTTTCTCCGCTGTAATCTCAGGGAGATAGGATT
1 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
1446578 ACTGGCTTCA
Statistics
Matches: 1652, Mismatches: 270, Indels: 162
0.79 0.13 0.08
Matches are distributed among these distances:
389 9 0.01
390 4 0.00
391 78 0.05
392 357 0.22
393 66 0.04
394 943 0.57
395 81 0.05
396 56 0.03
397 57 0.03
398 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (395 bp):
AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTCACTAATCTTCGATCTAGCTCCACTATAAT
CTCAGGGAGATAAGATCTGAATTCTTCGATCTATTCCACTGTAATCTCAGGGAGATAAGACCTGA
TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATACTATATTTTAATCTGTTCCACTGTAAT
CTTAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTCAT
ATTCTTCGATCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAA
CTTCAGAGAGATAAGATCCTTATTTTAATCTACTCCACTGTAATCTTAGGGAAATAGGATTACTA
GCTTC
Found at i:1445336 original size:219 final size:217
Alignment explanation
Indices: 1444839--1445307 Score: 498
Period size: 219 Copynumber: 2.2 Consensus size: 217
1444829 TGCAATTCTT
* * * * * * *** * *
1444839 CGATCTATTCCATTGTAATCTCAGGGACATAAGACTTGATTTGATCTACTCTACTGTAACTTCAG
1 CGATCTACTCCACTGTAATCTCAGAGAGATAAGACCTCATGCAATCTACTCCACTGTAATTTCAG
* *
1444904 AGAGATAAGATACTATATTTTAATCCGTTCCACTGTAATCTTAGGGAAATAGGATTACTGGCTTA
66 AGAGATAAGATACTATATTTTAATCCGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTA
* * * *
1444969 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCAATTTAGATTAGCTCCACTATTTCTT
131 AATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCAATTTAGATTAGCTCCACTATATCTC
* * *
1445034 TGGGAGATAAGATCTGGAATTCTT
196 AGGGAGATAAGACCTGGAA-T-TG
* * * * * *
1445058 CGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAATTTCAG
1 CGATCTACTCCACTGTAATCTCAGAGAGATAAGACCTCATGCAATCTACTCCACTGTAATTTCAG
* * * * *
1445123 AGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTC
66 AGAGATAAGATACTATATTTTAATCCGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTA
* * * * * *
1445188 AATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTCA-TATTCTTCGGTCTA-TTCCACTGTAA
131 AATCTGCTCCGCTATAATCTCAGGGAGATAAGAT-TCACCAAT-TTAGAT-TAGCTCCACTAT-A
1445251 TCTCAGGGAGATAAGACCT-G-A-TG
192 TCTCAGGGAGATAAGACCTGGAATTG
* *
1445274 CGATCTACTCTACTGTAATTTCAGAGAGATAAGA
1 CGATCTACTCCACTGTAATCTCAGAGAGATAAGA
1445308 TCCTTTCTTT
Statistics
Matches: 214, Mismatches: 32, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
216 30 0.14
219 151 0.71
220 15 0.07
221 18 0.08
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33
Consensus pattern (217 bp):
CGATCTACTCCACTGTAATCTCAGAGAGATAAGACCTCATGCAATCTACTCCACTGTAATTTCAG
AGAGATAAGATACTATATTTTAATCCGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTA
AATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCAATTTAGATTAGCTCCACTATATCTC
AGGGAGATAAGACCTGGAATTG
Found at i:1445610 original size:217 final size:218
Alignment explanation
Indices: 1445387--1445788 Score: 637
Period size: 219 Copynumber: 1.8 Consensus size: 218
1445377 TAATCTCAGG
* * *
1445387 GAGATAAGATCT-CATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATACG
1 GAGATAAGATCTGCA-ATTCTTAGGTCTATTCCACAGTAATCTCAAGGAGATAAGACCTGATACG
* * *
1445451 ATCTGCTCTACTGTAACTTC-AGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAG
65 ATATACTCTACTGTAACTTCAAGAGATAAGATCCTGTATTTTAATCCGCTCCACTGTAATCTCAG
* * * *
1445515 GGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATTTT
130 GGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCATTTT
1445580 CGATTAGCTCTACTATTGCTTAGA
195 CGATTAGCTCTACTATTGCTTAGA
* * *
1445604 GAGATAAGATCTGGAATTCTTAGGTCTATTCCACAGTAATCTCAATGAGATAAGACCTGATGCGA
1 GAGATAAGATCTGCAATTCTTAGGTCTATTCCACAGTAATCTCAAGGAGATAAGACCTGATACGA
* *
1445669 TATACTCTACTGTAACTTCAGAGAGATAAGATCCTGTATTTTAATCCGTTCCACTGTAATCTTAG
66 TATACTCTACTGTAACTTCA-AGAGATAAGATCCTGTATTTTAATCCGCTCCACTGTAATCTCAG
1445734 GGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGAT
130 GGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGAT
1445789 CTCATATTCT
Statistics
Matches: 167, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
217 74 0.44
218 1 0.01
219 92 0.55
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (218 bp):
GAGATAAGATCTGCAATTCTTAGGTCTATTCCACAGTAATCTCAAGGAGATAAGACCTGATACGA
TATACTCTACTGTAACTTCAAGAGATAAGATCCTGTATTTTAATCCGCTCCACTGTAATCTCAGG
GAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCATTTTC
GATTAGCTCTACTATTGCTTAGA
Found at i:1445731 original size:175 final size:174
Alignment explanation
Indices: 1445604--1446134 Score: 848
Period size: 175 Copynumber: 3.0 Consensus size: 174
1445594 ATTGCTTAGA
* * * **
1445604 GAGATAAGATCTGGA-ATTCTTAGGTCTATTCCACAGTAATCTCAATGAGATAAGACCTGATGCG
1 GAGATAAGATCT-CATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCG
* * *
1445668 ATATACTCTACTGTAACTTCAGAGAGATAAGATCCTGTATTTTAATCCGTTCCACTGTAATCTTA
65 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTTA
1445733 GGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGG
130 GGGAAATAGGATTACTAGATTCAATCTGCTCCGCTAT-ATCTCAGG
1445779 GAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGA
1 GAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGA
* *
1445844 TCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTCTTTTAATCTGTTCCACTGTAATCTTAG
66 TCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTTAG
1445909 GGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGG
131 GGAAATAGGATTACTAGATTCAATCTGCTCCGCTAT-ATCTCAGG
1445954 GAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGA
1 GAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGA
* * * *
1446019 TCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTGTAATCTCAG
66 TCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTTAG
* * * * *
1446084 GGAAATAGGATTACTGGCTTCAATTTACTCCGCTGTAATCTCAGG
131 GGAAATAGGATTACTAGATTCAATCTGCTCCGCTAT-ATCTCAGG
1446129 GAGATA
1 GAGATA
1446135 GGATTACTGG
Statistics
Matches: 334, Mismatches: 21, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
174 1 0.00
175 333 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (174 bp):
GAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGA
TCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTTAG
GGAAATAGGATTACTAGATTCAATCTGCTCCGCTATATCTCAGG
Found at i:1445902 original size:219 final size:215
Alignment explanation
Indices: 1445411--1445874 Score: 501
Period size: 219 Copynumber: 2.1 Consensus size: 215
1445401 TATTCTTCGG
* * ** * * *
1445411 TCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATACGATCTGCTCTACTGTAACTTCAGAGA
1 TCTACTCCACAGTAATCTCAATGAGATAAGACCTCATGCAATCTGCTCTACTGTAACTTCAGAGA
* * *
1445476 TAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
66 TAAGATCCTGTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGATTCAATCT
* * * * *
1445541 GCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATTTTCGATTAGCTCTACTATTGCTTAGAGA
131 GCTCCGCTATAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTAATGCTCAGAGA
* * *
1445606 GATAAGATCTGGAATTCTTAGG
196 GATAAGACCTGGAATGC-T-GA
* * * * *
1445628 TCTATTCCACAGTAATCTCAATGAGATAAGACCTGATGCGATATACTCTACTGTAACTTCAGAGA
1 TCTACTCCACAGTAATCTCAATGAGATAAGACCTCATGCAATCTGCTCTACTGTAACTTC--AGA
* *
1445693 GATAAGATCCTGTATTTTAATCCGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTCAAT
64 GATAAGATCCTGTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGATTCAAT
* * *
1445758 CTGCTCCGCTATAATCTCAGGGAGATAAGATCTCA-TATTCTTCGGTCTA-TTCCACTGTAAT-C
129 CTGCTCCGCTATAATCTCAGGGAGATAAGAT-TCACCATT-TTCGAT-TAGCTCCAC--TAATGC
*
1445820 TCAGGGAGATAAGACCT-G-ATGC-GA
189 TCAGAGAGATAAGACCTGGAATGCTGA
* * *
1445844 TCTACTCTACTGTAATTTCAGA-GAGATAAGA
1 TCTACTCCACAGTAATCTCA-ATGAGATAAGA
1445875 TCCTTTCTTT
Statistics
Matches: 212, Mismatches: 27, Indels: 17
0.83 0.11 0.07
Matches are distributed among these distances:
216 26 0.12
217 55 0.26
219 98 0.46
220 13 0.06
221 17 0.08
222 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (215 bp):
TCTACTCCACAGTAATCTCAATGAGATAAGACCTCATGCAATCTGCTCTACTGTAACTTCAGAGA
TAAGATCCTGTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAGGATTACTAGATTCAATCT
GCTCCGCTATAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTAATGCTCAGAGA
GATAAGACCTGGAATGCTGA
Found at i:1446357 original size:263 final size:262
Alignment explanation
Indices: 1445886--1446397 Score: 731
Period size: 263 Copynumber: 1.9 Consensus size: 262
1445876 CCTTTCTTTT
* * *
1445886 AATCTGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTC
1 AATCTGCTCCACTGTAATCTTAGGGAAATAAGATTACCAGATTCAATCTGCTCCGCTAT-ATCTC
* * * * *
1445951 AGGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATG
65 AAGGAGACAAGATCTCAAACTCTTCGGTCTATTCCACTGTAAGCTCAGGGAGATAAGACCTGATG
* * * * *
1446016 CGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCTGCTCCACTGTAATCT
130 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATACTATATTTTAATCCGCTCCACTGTAATCT
* * * *
1446081 CAGGGAAATAGGATTACTGGCTTCAATTTACTCCGCTGTAATCTCAGGGAGATAGGATTACTGGC
195 CAGGGAAATAGGATTACTAGATTCAATCTACTCCGCTATAATCTCAGGGAGATAGGATTACTGGC
1446146 TTC
260 TTC
* * ** *
1446149 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATCTTCGATCTGCTCCGCTAT-TGCT
1 AATCTGCTCCACTGTAATCTTAGGGAAATAAGATT-ACCAGATTCAATCTGCTCCGCTATAT-CT
* *
1446213 CAAGGAGACAAGATCT-AGAACTCTTCGGTCTATTCCACTGTAAGCTCAGGGGGATAAGACCTTA
64 CAAGGAGACAAGATCTCA-AACTCTTCGGTCTATTCCACTGTAAGCTCAGGGAGATAAGACCTGA
*
1446277 TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATACTATATTTTAATCCGTTCCACTGTAAT
128 TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATACTATATTTTAATCCGCTCCACTGTAAT
* *
1446342 CTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAGATA
193 CTCAGGGAAATAGGATTACTAGATTCAATCTACTCCGCTATAATCTCAGGGAGATA
1446398 AGATCTCATA
Statistics
Matches: 219, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
262 2 0.01
263 197 0.90
264 20 0.09
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (262 bp):
AATCTGCTCCACTGTAATCTTAGGGAAATAAGATTACCAGATTCAATCTGCTCCGCTATATCTCA
AGGAGACAAGATCTCAAACTCTTCGGTCTATTCCACTGTAAGCTCAGGGAGATAAGACCTGATGC
GATCTACTCTACTGTAACTTCAGAGAGATAAGATACTATATTTTAATCCGCTCCACTGTAATCTC
AGGGAAATAGGATTACTAGATTCAATCTACTCCGCTATAATCTCAGGGAGATAGGATTACTGGCT
TC
Found at i:1446403 original size:175 final size:175
Alignment explanation
Indices: 1446155--1446572 Score: 536
Period size: 175 Copynumber: 2.4 Consensus size: 175
1446145 CTTCAATCTG
* * * * * * *
1446155 CTCCGCTGTAATCTTAGGGAGATAAGATTCACCATCTTCGATCTGCTCCGCTAT--TGCTCAAGG
1 CTCCACTGTAATCTTAGGGAAATAGGATT-ACTAGCTTCAATCTGCTCCGCTATAAT-CTCAGGG
* * *
1446218 AGACAAGATCT-AGAACTCTTCGGTCTATTCCACTGTAAGCTCAGGGGGATAAGACCTTATGCGA
64 AGATAAGATCTCA-AACTCTTCGGTCTATTCCACTGTAAGCTCAGGGAGATAAGACCTGATGCGA
* *
1446282 TCTACTCTACTGTAACTTCAGAGAGATAAGATACTATATTTTAATCCG
128 TCTACTCTACTGTAACTTAAGAGAGATAAGATACTATATTTTAATCCA
* *
1446330 TTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAATCTCAGGGAG
1 CTCCACTGTAATCTTAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAG
* * *
1446395 ATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
66 ATAAGATCTCAAACTCTTCGGTCTATTCCACTGTAAGCTCAGGGAGATAAGACCTGATGCGATCT
* * * *
1446460 ACTCTACTGTAACTTAAGAGAGATAAGATTCTTTATTTTCATCTA
131 ACTCTACTGTAACTTAAGAGAGATAAGATACTATATTTTAATCCA
* * * * * * *
1446505 CTCCACTATAATATCAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCTCAGGGAG
1 CTCCACTGTAATCTTAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAG
1446570 ATA
66 ATA
1446573 GGATTACTGG
Statistics
Matches: 210, Mismatches: 30, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
174 20 0.10
175 188 0.90
176 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (175 bp):
CTCCACTGTAATCTTAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAGGGAG
ATAAGATCTCAAACTCTTCGGTCTATTCCACTGTAAGCTCAGGGAGATAAGACCTGATGCGATCT
ACTCTACTGTAACTTAAGAGAGATAAGATACTATATTTTAATCCA
Found at i:1447144 original size:482 final size:481
Alignment explanation
Indices: 1445931--1447834 Score: 1848
Period size: 482 Copynumber: 4.0 Consensus size: 481
1445921 ACTAGATTCA
* * * *
1445931 ATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTCATATTCTTCGGTCTATTCCACTGTAATCT
1 ATCTACTCCACTATAATCTCAGGGAGATAAGATCTGAT-TTATTC-GTCTATTCCACTGTAATCT
* *
1445996 CAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTT
64 CAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATTCTTTATTTT
*
1446061 CATCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTACTCCGCTGTAATCTC
129 CATCTACTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTACTCCGCTGTAATCTC
* *
1446126 AGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCATC
194 AGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATTCACCGTC
* *
1446191 TTCGATCTGCTCCGCTATTGCTCAAGGAGACAAGATCTAGAACTCTTCGGTCTATTCCACTGTAA
259 TTCGATCTGCTCCACTATTGCTCAAGGAGACAAGATCTGGAACTCTTC-GTCTATTCCACTGTAA
* * * * *
1446256 GCTCAGGGGGATAAGACCTTATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATACTATAT
323 TCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTAT
* *
1446321 TTTAATCCGTTCCACTGTAATCTTAGGGAAATAGGATTACTAGATTCAATCTGCTCCGCTATAAT
388 TTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGATTCAATCTGCTCCACTATAAT
*
1446386 CTCAGGGAGATAAGATCTCATATTCTTCG
453 CTCAGGGAGATAAGATCTCACATTCTTCG
* * * * * * *
1446415 GTCTATTCCACTGTAATCTCAGGGAGATAAGACCTG----ATGCGATCTACTCTACTGTAA-CTT
1 ATCTACTCCACTATAATCTCAGGGAGATAAGATCTGATTTATTCG-TCTATTCCACTGTAATC-T
* * * * * * * * * * *
1446475 AAGAGAGATAAGATTCTTTATTTTC-ATCTACTCCACTATAA-TATCAGGGAAATAGGATTAC-T
64 CAGGGAGATAAGA--CCTGA--TGCGATCTACTCTACTGTAACT-TAAGAGAGATAAGATT-CTT
** * * * * * *
1446537 T-GCTTCAATTTTCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTG
123 TATTTTC-ATCTACTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTACTCCGCTG
* ** * **
1446601 TAATCTTAAAGAGATAGGATTACTAGCTTCAATCTGCTCTACTGTAATCTTATGGAGATAAGATT
187 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATT
*
1446666 CACCGTCTTCGATCTTCTCCACTATTGCTCAAGGAGACAAGATCTGGAACTCTTCGATCTATTCC
252 CACCGTCTTCGATCTGCTCCACTATTGCTCAAGGAGACAAGATCTGGAACTCTTCG-TCTATTCC
* * * *
1446731 ACAGTAATCTCAGGGAGAAAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATAT
316 ACTGTAATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGAT
* * * * *
1446796 CCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCTTTAATCTGTTCCA
381 CCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGATTCAATCTGCTCCA
* **
1446861 CTATAATCTCAGGGAGATCAGAT-TCACCATT-TTTT
446 CTATAATCTCAGGGAGATAAGATCTCA-CATTCTTCG
* * * *
1446896 AT-TAGCTCCACTAT-TTTTTAGGGAGATAATATCTGGATTTATTCAGTCTATTCCACTGTAATC
1 ATCTA-CTCCACTATAATCTCAGGGAGATAAGATCT-GATTTATTC-GTCTATTCCACTGTAATC
1446959 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATTCTTTATTT
63 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATTCTTTATTT
* * * *
1447024 TCATCTACTCCACTATAATATCAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATCT
128 TCATCTACTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTACTCCGCTGTAATCT
* *
1447089 CAGGGAGATAGGATTACTGGCTTCATTCTGCTCCGCTGTAATCTTATGAAGATAAGATTCACCGT
193 CAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATTCACCGT
* *
1447154 CTTCGATCTGCTCTACTATTGCTCAGGGAGACAAGATCTGGAACT-TTCTGTCTATTCCACTGTA
258 CTTCGATCTGCTCCACTATTGCTCAAGGAGACAAGATCTGGAACTCTTC-GTCTATTCCACTGTA
1447218 ATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA
322 ATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTA
* * * * * * * *
1447283 TTTTAATCCGTTCCACTGTAATCTCAGGGAGATAAGA--CCTA-ATGCGATCTACTCTACTGTAA
387 TTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGATTCAATCTGCTCCACTATAA
* ** *
1447345 -CTTCAGAGAGATAAGATC-CTTTATT-TT-A
452 TC-TCAGGGAGATAAGATCTC-ACATTCTTCG
*** * * * * *
1447373 ATCCGTTCCACTGTAATCTCAGGGAGATAAGACCT-A---ATGCGATCTACTCTACTGTAA-CTT
1 ATCTACTCCACTATAATCTCAGGGAGATAAGATCTGATTTATTCG-TCTATTCCACTGTAATC-T
* * *** *** * * * *
1447433 CAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAA-TCTCAGGGAGATAAGA--C-CTA
64 CAGGGAGATAAGA-CC-TGA-TGCGATCTACTCTACTGTAACT-TAAGAGAGATAAGATTCTTTA
* * * * * * * *** * **** *
1447494 -ATGCGATCTACTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTTAATCCGTTCCACTG
125 TTTTC-ATCTACTCCACTGTAATC-TCAGGGAAATAGGATTAC-TGGCTTCAATTTACTCCGCTG
* * * * * *
1447556 TAATCTCAGGGTA-ATAGGATTACTAGCATT-AATATGCTCCGCTATAATCTCAGGGAGATCAGA
187 TAATCTCAGGG-AGATAGGATTACTGGC-TTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGA
* * ** ** * * * * ** *
1447619 TTCACCATTTTTTAT-TAGCTCCACTATTTTTTAGGGAGATAATATCTGGATTTATTCAGTCTAT
250 TTCACCGTCTTCGATCT-GCTCCACTATTGCTCAAGGAGACAAGATCTGGAACTCTTC-GTCTAT
* **
1447683 TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACAGTACTGTAACTAT-AGAGAGATA
313 TCCACTGTAATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACT-TCAGAGAGATA
* * * * * * *
1447747 AGTTCCTTTATTTTCATCCGTTCCACTGTAATATCAGGGAAATAGGATTACTGGCTTTAATTTGC
377 AGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGATTCAATCTGC
* *
1447812 TCCGCTGTAATCTCAGGGAGATA
442 TCCACTATAATCTCAGGGAGATA
1447835 GGATTACTGG
Statistics
Matches: 1165, Mismatches: 208, Indels: 101
0.79 0.14 0.07
Matches are distributed among these distances:
472 7 0.01
473 158 0.14
474 116 0.10
475 4 0.00
476 28 0.02
477 33 0.03
478 50 0.04
479 30 0.03
480 17 0.01
481 136 0.12
482 517 0.44
483 10 0.01
484 29 0.02
485 28 0.02
486 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (481 bp):
ATCTACTCCACTATAATCTCAGGGAGATAAGATCTGATTTATTCGTCTATTCCACTGTAATCTCA
GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATTCTTTATTTTCA
TCTACTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTACTCCGCTGTAATCTCAG
GGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATTCACCGTCTT
CGATCTGCTCCACTATTGCTCAAGGAGACAAGATCTGGAACTCTTCGTCTATTCCACTGTAATCT
CAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
AATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGATTCAATCTGCTCCACTATAATCTC
AGGGAGATAAGATCTCACATTCTTCG
Found at i:1447254 original size:85 final size:85
Alignment explanation
Indices: 1447208--1447566 Score: 718
Period size: 85 Copynumber: 4.2 Consensus size: 85
1447198 TTTCTGTCTA
1447208 TTCCACTGTAATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1447273 AGATCCTTTATTTTAATCCG
66 AGATCCTTTATTTTAATCCG
1447293 TTCCACTGTAATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1447358 AGATCCTTTATTTTAATCCG
66 AGATCCTTTATTTTAATCCG
1447378 TTCCACTGTAATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1447443 AGATCCTTTATTTTAATCCG
66 AGATCCTTTATTTTAATCCG
1447463 TTCCACTGTAATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1447528 AGATCCTTTATTTTAATCCG
66 AGATCCTTTATTTTAATCCG
1447548 TTCCACTGTAATCTCAGGG
1 TTCCACTGTAATCTCAGGG
1447567 TAATAGGATT
Statistics
Matches: 274, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 274 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (85 bp):
TTCCACTGTAATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATA
AGATCCTTTATTTTAATCCG
Found at i:1448015 original size:307 final size:307
Alignment explanation
Indices: 1447378--1448144 Score: 930
Period size: 307 Copynumber: 2.5 Consensus size: 307
1447368 TTTTAATCCG
*
1447378 TTCCACTGTAATCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
* * * * * * * *
1447443 AGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAGATAAGACCTAAT-GC---GATCTA
66 AGTTCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGA-TTACTGGCTTTAATTTG
* * * * * * * **
1447504 CTCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGT
130 CTCCACTGTAATC-TCAGGGAGATAAGATACTTGACTTCAATCCGCTCCACTGTAATCTCAAAGT
* * * **
1447568 AATAGGATTACTAGCATTAATATGCTCCGCTATAATCTCAGGGAGATCAGATTCACCATTTTTTA
194 AATAGGATTACTAGCATTAATATGCTCCACTATAATCTCAGGGAGATAAGATTCACCATCTTCGA
** * * * *
1447633 TTAGCTCCACTATTTTTTAGGGAGATAATATCTGGATTTATTCAGTCTA
259 TTAGCTCCACTATTGCTCAGGGAGACAAGATCTGGATCTATTCAGTCTA
**
1447682 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACAGTACTGTAACTAT-AGAGAGAT
1 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACT-TCAGAGAGAT
* *
1447746 AAGTTCCTTTATTTTCATCCGTTCCACTGTAATATCAGGGAAATAGGATTACTGGCTTTAATTTG
65 AAGTTCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTTAATTTG
* * * * * *
1447811 CTCCGCTGTAATCTCAGGGAGATAGGATTAC-TGGCTTCAATCTGCTCCGCTGTAATCTTAAAG-
130 CTCCACTGTAATCTCAGGGAGATAAGA-TACTTGACTTCAATCCGCTCCACTGTAATCTCAAAGT
* * * * *
1447874 AGATAGGATTACTAGC-TTCAATCTGCTCTACTGTAATCTTATGGAGATAAGATTCACCATCTTC
194 A-ATAGGATTACTAGCATT-AATATGCTCCACTATAATCTCAGGGAGATAAGATTCACCATCTTC
* *
1447938 GATCT-GCTCCACTATTGCTCAGGGAGACAAGATCTGG-TACTCTTCGGTCTA
257 GAT-TAGCTCCACTATTGCTCAGGGAGACAAGATCTGGAT-CTATTCAGTCTA
1447989 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
1 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
*
1448054 AGATT-CTTTATTTTTATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGG-TTTCAATTT
66 AG-TTCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTT-AATTT
1448117 GCTCCACTGTAATCTCAGGGAGATAAGA
129 GCTCCACTGTAATCTCAGGGAGATAAGA
1448145 CCTGATGCGA
Statistics
Matches: 397, Mismatches: 52, Indels: 25
0.84 0.11 0.05
Matches are distributed among these distances:
303 3 0.01
304 104 0.26
305 1 0.00
306 8 0.02
307 275 0.69
308 6 0.02
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (307 bp):
TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
AGTTCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTTAATTTGC
TCCACTGTAATCTCAGGGAGATAAGATACTTGACTTCAATCCGCTCCACTGTAATCTCAAAGTAA
TAGGATTACTAGCATTAATATGCTCCACTATAATCTCAGGGAGATAAGATTCACCATCTTCGATT
AGCTCCACTATTGCTCAGGGAGACAAGATCTGGATCTATTCAGTCTA
Done.