Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 44 of 153
Found at i:14660016 original size:46 final size:46
Alignment explanation
Indices: 14659957--14660189 Score: 315
Period size: 46 Copynumber: 5.3 Consensus size: 46
14659947 TGACAAGTGG
**
14659957 AAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAAGTGAC
1 AAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAC
**
14660003 AAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGCCAC
1 AAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAC
*
14660049 AAAATGATAAGTGGTAGCCTTAGCTACAC---T-T-ATC---TGAC
1 AAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAC
* *
14660087 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAA
1 AAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAC
* *
14660133 AAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGAT-TAGGGAC
1 AAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAC
14660178 -AAGTGATAAGTG
1 AAAGTGATAAGTG
14660190 ATCATACTTA
Statistics
Matches: 165, Mismatches: 14, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
38 29 0.18
41 4 0.02
42 2 0.01
43 4 0.02
44 12 0.07
45 4 0.02
46 110 0.67
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.29
Consensus pattern (46 bp):
AAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGTGAC
Found at i:14660098 original size:38 final size:38
Alignment explanation
Indices: 14660047--14660169 Score: 156
Period size: 38 Copynumber: 3.0 Consensus size: 38
14660037 TGATCAAGCC
*
14660047 ACAAAATGATAAGTGGTAGCCTTAGCTACACTTATCTG
1 ACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTG
*
14660085 ACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTG
1 ACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTG
14660123 ATCAAGTGAAAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTG
1 A-C-------AAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTG
14660169 A
1 A
14660170 TTAGGGACAA
Statistics
Matches: 74, Mismatches: 3, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
38 37 0.50
39 1 0.01
46 36 0.49
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.29
Consensus pattern (38 bp):
ACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTG
Found at i:14660141 original size:84 final size:84
Alignment explanation
Indices: 14659999--14660169 Score: 299
Period size: 84 Copynumber: 2.0 Consensus size: 84
14659989 TCTGATCAAG
14659999 TGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGCCACAAAATGATAAGTGGT
1 TGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGCCACAAAATGATAAGTGGT
14660064 AGCCTTAGCTACACTTATC
66 AGCCTTAGCTACACTTATC
* **
14660083 TGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGA-AAAAGTGATAAGTGG
1 TGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGCCACAAAA-TGATAAGTGG
14660147 TAGCCTTAGCTACACTTATC
65 TAGCCTTAGCTACACTTATC
14660167 TGA
1 TGA
14660170 TTAGGGACAA
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
83 4 0.05
84 79 0.95
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (84 bp):
TGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCAAGCCACAAAATGATAAGTGGT
AGCCTTAGCTACACTTATC
Found at i:14662074 original size:20 final size:20
Alignment explanation
Indices: 14662008--14662074 Score: 68
Period size: 20 Copynumber: 3.4 Consensus size: 20
14661998 ATTTATAACC
14662008 TATATTT-A-AATTTTGTAA
1 TATATTTCATAATTTTGTAA
*
14662026 GTATTATTTCATATATTTTGTTA
1 -TA-TATTTCATA-ATTTTGTAA
*
14662049 TA-ATTTCATAATTTTATAA
1 TATATTTCATAATTTTGTAA
14662068 TATATTT
1 TATATTT
14662075 GGTTTAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
19 11 0.28
20 17 0.43
21 1 0.03
22 3 0.08
23 8 0.20
ACGTcount: A:0.34, C:0.03, G:0.04, T:0.58
Consensus pattern (20 bp):
TATATTTCATAATTTTGTAA
Found at i:14679280 original size:23 final size:23
Alignment explanation
Indices: 14679254--14679298 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
14679244 TTTCTTACTG
*
14679254 TAGTAATTTTCGGGGTATTACAA
1 TAGTAATTTTCGGGATATTACAA
*
14679277 TAGTAATTTTTGGGATATTACA
1 TAGTAATTTTCGGGATATTACA
14679299 CGAATGGAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (23 bp):
TAGTAATTTTCGGGATATTACAA
Found at i:14685543 original size:27 final size:27
Alignment explanation
Indices: 14685505--14685574 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
14685495 CAAGGTTACT
14685505 CACACAAGCTGACATTATGAATCTGCC
1 CACACAAGCTGACATTATGAATCTGCC
* *
14685532 CACACAAGCTGACATTATGAATTTGCT
1 CACACAAGCTGACATTATGAATCTGCC
*
14685559 CACACAAGCTAACATT
1 CACACAAGCTGACATT
14685575 GTATCGAGGT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.36, C:0.27, G:0.13, T:0.24
Consensus pattern (27 bp):
CACACAAGCTGACATTATGAATCTGCC
Found at i:14685934 original size:21 final size:20
Alignment explanation
Indices: 14685910--14685959 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
14685900 CATTTATATA
14685910 AATTAATAAGCAAAATAAAAC
1 AATTAATAA-CAAAATAAAAC
* *
14685931 AATTCAATCACAACATAAAAC
1 AATT-AATAACAAAATAAAAC
14685952 AATATAAT
1 AAT-TAAT
14685960 GAATGAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.62, C:0.14, G:0.02, T:0.22
Consensus pattern (20 bp):
AATTAATAACAAAATAAAAC
Found at i:14688949 original size:37 final size:37
Alignment explanation
Indices: 14688888--14689033 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
14688878 TACGTATGAT
* *
14688888 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
14688923 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
14688960 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
14688997 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
14689034 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:14689050 original size:46 final size:46
Alignment explanation
Indices: 14688997--14689265 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
14688987 TAAGTGTAGC
* **
14688997 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
14689043 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
14689089 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
14689141 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
14689187 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
14689239 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
14689266 AGTACTCAAA
Statistics
Matches: 199, Mismatches: 12, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
46 112 0.56
48 1 0.01
49 2 0.01
50 1 0.01
52 83 0.42
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:14689116 original size:52 final size:52
Alignment explanation
Indices: 14689040--14689259 Score: 299
Period size: 52 Copynumber: 4.3 Consensus size: 52
14689030 TAGCTAAAGC
* *
14689040 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
14689093 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
14689145 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
14689191 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
14689243 TATCACTTTGTCACTTG
1 TATCACTTT-TCACTTG
14689260 ATCAGAAGTA
Statistics
Matches: 148, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
46 43 0.29
49 1 0.01
52 86 0.58
53 18 0.12
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:14689162 original size:98 final size:98
Alignment explanation
Indices: 14688997--14689265 Score: 457
Period size: 98 Copynumber: 2.7 Consensus size: 98
14688987 TAAGTGTAGC
* * *
14688997 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
14689062 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
65 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
**
14689096 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
*
14689161 GATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 GATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
14689194 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
14689259 GATCAGA
66 GATCAGA
14689266 AGTACTCAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
98 151 0.94
99 9 0.06
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACTT
GATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:14695157 original size:21 final size:21
Alignment explanation
Indices: 14695133--14695185 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
14695123 CTCGATGGTA
*
14695133 ATGAGATTAATTACTGTAACG
1 ATGAGATTAAATACTGTAACG
* *
14695154 ATGAGATTAAATATTGTAATG
1 ATGAGATTAAATACTGTAACG
14695175 ATGTA-ATTAAA
1 ATG-AGATTAAA
14695186 AACAGGTGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.43, C:0.04, G:0.17, T:0.36
Consensus pattern (21 bp):
ATGAGATTAAATACTGTAACG
Found at i:14697550 original size:30 final size:28
Alignment explanation
Indices: 14697495--14697554 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
14697485 ACTTTAAAAC
14697495 TTTTAAAAATTCAAAAAAATAAAATTTAT
1 TTTTAAAAATTCAAAAAAATAAAA-TTAT
*
14697524 TTTTAAAAATT-AAAAATCATTAAAATTAT
1 TTTTAAAAATTCAAAAA--AATAAAATTAT
14697553 TT
1 TT
14697555 AAAAGTATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 5 0.18
29 17 0.61
30 6 0.21
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (28 bp):
TTTTAAAAATTCAAAAAAATAAAATTAT
Found at i:14704168 original size:12 final size:12
Alignment explanation
Indices: 14704127--14704168 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
14704117 ATGATAATTA
14704127 ATTTTTCTTTTT
1 ATTTTTCTTTTT
*
14704139 ATCCTTT-TTTTT
1 AT-TTTTCTTTTT
*
14704151 ACTTTTCTTTTT
1 ATTTTTCTTTTT
14704163 ATTTTT
1 ATTTTT
14704169 AATATTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 3 0.12
12 18 0.75
13 3 0.12
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.79
Consensus pattern (12 bp):
ATTTTTCTTTTT
Found at i:14705024 original size:13 final size:13
Alignment explanation
Indices: 14705006--14705033 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14704996 AATATATTGA
14705006 AAATTTTATATAC
1 AAATTTTATATAC
14705019 AAATTTTATATAC
1 AAATTTTATATAC
14705032 AA
1 AA
14705034 TACATAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (13 bp):
AAATTTTATATAC
Found at i:14705956 original size:25 final size:25
Alignment explanation
Indices: 14705911--14705963 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
14705901 TATATCATAT
*
14705911 ATCCAACTTCATCCATCTCCA-TTC
1 ATCCAACTTCATCAATCTCCATTTC
14705935 ATCCTAACTTCATCAAAT-TCCATTTC
1 ATCC-AACTTCATC-AATCTCCATTTC
14705961 ATC
1 ATC
14705964 TCTCCACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 4 0.16
25 13 0.52
26 8 0.32
ACGTcount: A:0.28, C:0.36, G:0.00, T:0.36
Consensus pattern (25 bp):
ATCCAACTTCATCAATCTCCATTTC
Found at i:14725142 original size:11 final size:10
Alignment explanation
Indices: 14725126--14725170 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
14725116 TTTAACTTTC
14725126 TTTATATATTT
1 TTTATA-ATTT
14725137 TTTATAATTT
1 TTTATAATTT
* *
14725147 TTTAAAAATT
1 TTTATAATTT
*
14725157 TTCATAATTT
1 TTTATAATTT
14725167 TTTA
1 TTTA
14725171 AAAATATAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
10 22 0.79
11 6 0.21
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (10 bp):
TTTATAATTT
Found at i:14725163 original size:20 final size:20
Alignment explanation
Indices: 14725135--14725175 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
14725125 CTTTATATAT
*
14725135 TTTTTATAATTTTTTAAAAA
1 TTTTCATAATTTTTTAAAAA
14725155 TTTTCATAATTTTTTAAAAA
1 TTTTCATAATTTTTTAAAAA
14725175 T
1 T
14725176 ATAAATTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTCATAATTTTTTAAAAA
Found at i:14725222 original size:19 final size:19
Alignment explanation
Indices: 14725200--14725249 Score: 73
Period size: 20 Copynumber: 2.6 Consensus size: 19
14725190 TTTTATTAAT
14725200 ATTTTGAATTTTAAAAATG
1 ATTTTGAATTTTAAAAATG
* *
14725219 ATTTTAAATTTTTGAAAATG
1 ATTTTGAA-TTTTAAAAATG
14725239 ATTTTGAATTT
1 ATTTTGAATTT
14725250 CTTTTACCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (19 bp):
ATTTTGAATTTTAAAAATG
Found at i:14725236 original size:20 final size:20
Alignment explanation
Indices: 14725180--14725249 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
14725170 AAAAATATAA
**
14725180 ATTTTGAAATTTTTATTAAT-
1 ATTTT-AAATTTTTAAAAATG
*
14725200 ATTTTGAA-TTTTAAAAATG
1 ATTTTAAATTTTTAAAAATG
*
14725219 ATTTTAAATTTTTGAAAATG
1 ATTTTAAATTTTTAAAAATG
*
14725239 ATTTTGAATTT
1 ATTTTAAATTT
14725250 CTTTTACCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
18 8 0.19
19 9 0.21
20 25 0.60
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (20 bp):
ATTTTAAATTTTTAAAAATG
Found at i:14727434 original size:33 final size:33
Alignment explanation
Indices: 14727392--14727459 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
14727382 CTCATTTCCA
14727392 TTGCATCCCATCTCCTCCAGGCTAATGTTTGAG
1 TTGCATCCCATCTCCTCCAGGCTAATGTTTGAG
14727425 TTGCATCCCATCTCCTCCAGGCTAATGTTTGAG
1 TTGCATCCCATCTCCTCCAGGCTAATGTTTGAG
14727458 TT
1 TT
14727460 TCACATGATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.18, C:0.29, G:0.18, T:0.35
Consensus pattern (33 bp):
TTGCATCCCATCTCCTCCAGGCTAATGTTTGAG
Found at i:14732509 original size:30 final size:30
Alignment explanation
Indices: 14732473--14732579 Score: 97
Period size: 30 Copynumber: 3.3 Consensus size: 30
14732463 TCTCGTTTAC
*
14732473 ATAATAAATAAATTTACTTTTATGACTCAT
1 ATAATAAACAAATTTACTTTTATGACTCAT
* *
14732503 ATAATAAACAAATTTATTTTTTTGACTCAT
1 ATAATAAACAAATTTACTTTTATGACTCAT
*
14732533 ACTTTTATATAACAAACAAACTTACTTTTATGACTCAT
1 A----TA-AT---AAACAAATTTACTTTTATGACTCAT
*
14732571 ATAACAAAC
1 ATAATAAAC
14732580 TGTACTAATA
Statistics
Matches: 62, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
30 32 0.52
33 1 0.02
34 4 0.06
35 2 0.03
38 23 0.37
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.40
Consensus pattern (30 bp):
ATAATAAACAAATTTACTTTTATGACTCAT
Found at i:14733633 original size:10 final size:10
Alignment explanation
Indices: 14733618--14733663 Score: 67
Period size: 10 Copynumber: 4.6 Consensus size: 10
14733608 CAATTTATTT
14733618 TTTTCTTTTA
1 TTTTCTTTTA
14733628 TTTTCTTTTAA
1 TTTTCTTTT-A
*
14733639 CTTTCTTTTA
1 TTTTCTTTTA
14733649 TTTTC-TTTA
1 TTTTCTTTTA
14733658 TTTTCT
1 TTTTCT
14733664 ATTCTCTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 9 0.28
10 14 0.44
11 9 0.28
ACGTcount: A:0.11, C:0.13, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTCTTTTA
Found at i:14736248 original size:36 final size:36
Alignment explanation
Indices: 14736208--14736325 Score: 200
Period size: 36 Copynumber: 3.3 Consensus size: 36
14736198 ACTGCCACCA
14736208 CCAGCTCCACTTATTCCAAACCCATTTCAGCCTCCT
1 CCAGCTCCACTTATTCCAAACCCATTTCAGCCTCCT
*
14736244 CCAGCTCCACTTATTCCAAACCCCTTTCAGCCTCCT
1 CCAGCTCCACTTATTCCAAACCCATTTCAGCCTCCT
* *
14736280 CCAGCTCCTCTTATTCCAAACCCTTTTCAGCCTCCT
1 CCAGCTCCACTTATTCCAAACCCATTTCAGCCTCCT
*
14736316 CCAGCACCAC
1 CCAGCTCCAC
14736326 CGGCTCCACT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 77 1.00
ACGTcount: A:0.20, C:0.47, G:0.06, T:0.27
Consensus pattern (36 bp):
CCAGCTCCACTTATTCCAAACCCATTTCAGCCTCCT
Found at i:14736459 original size:45 final size:45
Alignment explanation
Indices: 14736277--14736464 Score: 259
Period size: 45 Copynumber: 4.2 Consensus size: 45
14736267 CTTTCAGCCT
* * *
14736277 CCTCCAGCTCCTCTTATTCCAAACCCTTTTCAGCCTCCTCCAGCA
1 CCTCCAGCTCCACTTATTCCAAACCCTTTCCAGCCTCCTCCCGCA
* * *
14736322 CCACCGGCTCCACTTATTCCAAACCCTTTTCAGCCTCCTCCCGCA
1 CCTCCAGCTCCACTTATTCCAAACCCTTTCCAGCCTCCTCCCGCA
* *
14736367 CCACCGGCTCCACTTATTCCAAACCCTTTCCAGCCTCCTCCCGCA
1 CCTCCAGCTCCACTTATTCCAAACCCTTTCCAGCCTCCTCCCGCA
* * * * *
14736412 CCTCCAGCTCCATTTATCCCGAACCCCTTCCAGCCTCCTCCGGCA
1 CCTCCAGCTCCACTTATTCCAAACCCTTTCCAGCCTCCTCCCGCA
14736457 CCTCCAGC
1 CCTCCAGC
14736465 ACCTCCAGCA
Statistics
Matches: 131, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 131 1.00
ACGTcount: A:0.17, C:0.50, G:0.09, T:0.24
Consensus pattern (45 bp):
CCTCCAGCTCCACTTATTCCAAACCCTTTCCAGCCTCCTCCCGCA
Found at i:14745148 original size:2 final size:2
Alignment explanation
Indices: 14745141--14745175 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
14745131 ATACAAAGCA
14745141 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
14745176 CTCTAAATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:14745455 original size:13 final size:13
Alignment explanation
Indices: 14745437--14745478 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
14745427 ATATGACGTG
14745437 ATTTTTTTGGTTC
1 ATTTTTTTGGTTC
* *
14745450 ATTTTTTT-ATGC
1 ATTTTTTTGGTTC
14745462 ACTTTTTTTGGTTC
1 A-TTTTTTTGGTTC
14745476 ATT
1 ATT
14745479 AATGTGACGT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
12 3 0.13
13 17 0.74
14 3 0.13
ACGTcount: A:0.12, C:0.10, G:0.12, T:0.67
Consensus pattern (13 bp):
ATTTTTTTGGTTC
Found at i:14749620 original size:8 final size:9
Alignment explanation
Indices: 14749602--14749672 Score: 65
Period size: 9 Copynumber: 7.4 Consensus size: 9
14749592 AAAATATTTT
14749602 AAAATTAAA
1 AAAATTAAA
14749611 AAAATTAAAA
1 AAAATT-AAA
14749621 AAAGTATTTAAA
1 AAA--A-TTAAA
14749633 AAAATTTAAAA
1 AAAA-TT-AAA
*
14749644 AAAATT--T
1 AAAATTAAA
14749651 AAAATTAAA
1 AAAATTAAA
14749660 AAAATTAAA
1 AAAATTAAA
14749669 AAAA
1 AAAA
14749673 AAGTATTTTA
Statistics
Matches: 53, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
7 6 0.11
9 19 0.36
10 12 0.23
11 7 0.13
12 7 0.13
13 2 0.04
ACGTcount: A:0.73, C:0.00, G:0.01, T:0.25
Consensus pattern (9 bp):
AAAATTAAA
Found at i:14749622 original size:11 final size:11
Alignment explanation
Indices: 14749608--14749674 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 11
14749598 TTTTAAAATT
14749608 AAAAAAATTAA
1 AAAAAAATTAA
* *
14749619 AAAAAGTATTTA
1 AAAAA-AATTAA
*
14749631 AAAAAATTTAA
1 AAAAAAATTAA
*
14749642 AAAAAATTTAAAA
1 AAAAAAATT--AA
14749655 TTAAAAAAATTAA
1 --AAAAAAATTAA
14749668 AAAAAAA
1 AAAAAAA
14749675 GTATTTTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
11 24 0.53
12 9 0.20
13 4 0.09
15 8 0.18
ACGTcount: A:0.75, C:0.00, G:0.01, T:0.24
Consensus pattern (11 bp):
AAAAAAATTAA
Found at i:14749622 original size:40 final size:41
Alignment explanation
Indices: 14749552--14749663 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 41
14749542 ACCAAAAATT
14749552 TATTTTAAAAATTAAAATAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATT-AAATAAAAATTAAAAAAAGTA-TTTAAAAA
14749596 TATTTTAAAATT-AA-AAAAATTAAAAAAAGTATTTAAAAA
1 TATTTTAAAATTAAATAAAAATTAAAAAAAGTATTTAAAAA
* * *
14749635 -AATTTAAAA-AAAATTTAAAATTAAAAAAA
1 TATTTTAAAATTAAA-TAAAAATTAAAAAAA
14749664 TTAAAAAAAA
Statistics
Matches: 62, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
38 10 0.16
39 8 0.13
40 30 0.48
41 2 0.03
43 6 0.10
44 6 0.10
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (41 bp):
TATTTTAAAATTAAATAAAAATTAAAAAAAGTATTTAAAAA
Found at i:14749674 original size:40 final size:39
Alignment explanation
Indices: 14749611--14749718 Score: 92
Period size: 40 Copynumber: 2.7 Consensus size: 39
14749601 TAAAATTAAA
***
14749611 AAAATTAAAAAAAGTATTTAAAAAAATTTAAAAAAAATTT
1 AAAATTAAAAAAA-TAAAAAAAAAAATTTAAAAAAAATTT
* ** *
14749651 AAAATTAAAAAAATTAAAAAAAAAGTATTTTAAAAGTATTTT
1 AAAATTAAAAAAA-TAAAAAAAAA--AATTTAAAAAAAATTT
*
14749693 AAAGTT-AAAAAATAAAAAATAAAAAT
1 AAAATTAAAAAAATAAAAAA-AAAAAT
14749719 ATTTATTATT
Statistics
Matches: 55, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
39 2 0.04
40 27 0.49
41 9 0.16
42 17 0.31
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.29
Consensus pattern (39 bp):
AAAATTAAAAAAATAAAAAAAAAAATTTAAAAAAAATTT
Found at i:14749683 original size:42 final size:42
Alignment explanation
Indices: 14749629--14749722 Score: 102
Period size: 42 Copynumber: 2.3 Consensus size: 42
14749619 AAAAAGTATT
* *
14749629 TAAAAA-AATTTAAAAAAAATTTAAAATTAAAAAAATTAAAAA
1 TAAAAATATTTTAAAAAAAATTTAAAATT-AAAAAATAAAAAA
* ** * *
14749671 -AAAAGTATTTTAAAAGTATTTTAAAGTTAAAAAATAAAAAA
1 TAAAAATATTTTAAAAAAAATTTAAAATTAAAAAATAAAAAA
14749712 TAAAAATATTT
1 TAAAAATATTT
14749723 ATTATTCGGG
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
41 16 0.38
42 26 0.62
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (42 bp):
TAAAAATATTTTAAAAAAAATTTAAAATTAAAAAATAAAAAA
Found at i:14749685 original size:11 final size:11
Alignment explanation
Indices: 14749671--14749695 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14749661 AAATTAAAAA
14749671 AAAAGTATTTT
1 AAAAGTATTTT
14749682 AAAAGTATTTT
1 AAAAGTATTTT
14749693 AAA
1 AAA
14749696 GTTAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:14757473 original size:12 final size:13
Alignment explanation
Indices: 14757448--14757476 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
14757438 ACAAATCCAT
14757448 AATATACAAAACA
1 AATATACAAAACA
14757461 AATATAC-AAACA
1 AATATACAAAACA
14757473 AATA
1 AATA
14757477 ATATTAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.69, C:0.14, G:0.00, T:0.17
Consensus pattern (13 bp):
AATATACAAAACA
Found at i:14757797 original size:3 final size:3
Alignment explanation
Indices: 14757671--14757783 Score: 108
Period size: 3 Copynumber: 38.7 Consensus size: 3
14757661 AATGAGTAAC
* * *
14757671 TAA TAA TGA TGA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** * *
14757719 TAA TAA TAA TAA TAA TGG TAA AAA TAA -AA -AA TAA TAA T-A TGAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* *
14757762 TAA TAA TAA -AA CAA TAG TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
14757784 GGGGTAATAA
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
2 8 0.09
3 84 0.90
4 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.07, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:14759503 original size:99 final size:97
Alignment explanation
Indices: 14759331--14760035 Score: 813
Period size: 99 Copynumber: 7.1 Consensus size: 97
14759321 CTTCTGTCTG
* * * * *
14759331 TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGTTCCAATGCACCGCT
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
**
14759396 AGGAAAGTAAGATTCGCCGTTGTGATTTCAATCT
66 AGG-AAGTAAGATTCGCCGTTGTGCCTT-AATCT
** * * * * *
14759430 TTTAATTGCAATGTCAAGG-AGATAAGATTCGTTGTTATAACTTTAATCTGTTCCACTGCACCGC
1 TTTAATTGCAATGTCGGGGAAG-CAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* *
14759494 CAGAGAAGTAAGATTCGCCGTTGTGGCCTCAATTT
65 CAG-GAAGTAAGATTCGCCGTTGT-GCCTTAATCT
* *
14759529 TTTAATTG-TATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAACCTGTTCCACTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCG-C
* *
14759593 CTA-AAAGTAAGATTCACCGTTGTGGCCTTAATCT
65 C-AGGAAGTAAGATTCGCCGTTGT-GCCTTAATCT
*
14759627 TTTAATTGCAATATCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
*
14759692 TGGAAAGTAAGATTCGCCGTTGTGGCCTTAATCT
66 AGG-AAGTAAGATTCGCCGTTGT-GCCTTAATCT
* * * *
14759726 TTTAATTGCAATATCGGGGAAGCAATATTTGCTGTTGTAGCTTCAATTTGTTCCACTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
* *
14759791 AGGGAAGTAAGATTCACCGTTGTGGCTTAAATCT
66 A-GGAAGTAAGATTCGCCGTTGTGCCTT-AATCT
* * * *
14759825 ATTTAACTACAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCAC
1 -TTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGC
** *
14759890 TTGGGAAGTAAGATTCGCCGTTGTGGCTTTAATCT
65 -CAGGAAGTAAGATTCGCCGTTGT-GCCTTAATCT
* *** * * *
14759925 TTTAATTACAATGTCGGGGAAATGAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCT
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
* * * *
14759990 TGGAAAGTAAGATTTGTCGTTGTGGCTTCAATCTT
66 AGG-AAGTAAGATTCGCCGTTGTGCCTT-AATC-T
14760025 TTTAATTGCAA
1 TTTAATTGCAA
14760036 ACTATGGTTT
Statistics
Matches: 523, Mismatches: 66, Indels: 33
0.84 0.11 0.05
Matches are distributed among these distances:
98 91 0.17
99 331 0.63
100 98 0.19
101 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (97 bp):
TTTAATTGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
AGGAAGTAAGATTCGCCGTTGTGCCTTAATCT
Found at i:14759714 original size:50 final size:50
Alignment explanation
Indices: 14759345--14760023 Score: 333
Period size: 50 Copynumber: 13.7 Consensus size: 50
14759335 ATTGCAATGT
* * * * *
14759345 CGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGTTCCAATGCACCGC
1 CGGGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
** * ** * **
14759395 TAGGAAAGTAAGATTCGCCGTTGT-GATTTCAATCT-TTTAATTGCAATGTC
1 CGGGAAAGTAAGATTCGCCGTTGTAG-CTTCAATCTGTTCCACTGCACCG-C
** * ** * * *
14759445 AAGGAGA-TAAGATTCGTTGTTATAACTTTAATCTGTTCCACTGCACCGC
1 CGGGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * * ** * * * *
14759494 C-AGAGAAGTAAGATTCGCCGTTGTGGCCTCAAT-TTTTTAATTGTA-TGT
1 CGGGA-AAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * *
14759542 CGGGGAAGCAAGATTCGCTGTTGTAGCTTCAACCTGTTCCACTGCACCGC
1 CGGGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
*** * * ** * ****
14759592 CCTAAAAGTAAGATTCACCGTTGTGGCCTT-AATCT-TTTAATTGCAATAT
1 CGGGAAAGTAAGATTCGCCGTTGTAG-CTTCAATCTGTTCCACTGCACCGC
* * *
14759641 CGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGC
1 CGGGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * ** * ****
14759691 CTGGAAAGTAAGATTCGCCGTTGTGGCCTT-AATCT-TTTAATTGCAATAT
1 CGGGAAAGTAAGATTCGCCGTTGTAG-CTTCAATCTGTTCCACTGCACCGC
* * * * * *
14759740 CGGGGAAGCAATATTTGCTGTTGTAGCTTCAATTTGTTCCACTGCACCGC
1 CGGGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * * ** * ** *
14759790 CAGGG-AAGTAAGATTCACCGTTGTGGCTTAAATCTATTTAACTACAATGT
1 C-GGGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * *
14759840 CGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCAC
1 CGGGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
* * * ** * * **
14759890 TTGGG-AAGTAAGATTCGCCGTTGTGGCTTTAATCT-TTTAATTACAATGTC
1 -CGGGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCG-C
* * *
14759940 GGGGAAA-TGAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
1 CGGGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
** * * *
14759989 TTGGAAAGTAAGATTTGTCGTTGTGGCTTCAATCT
1 CGGGAAAGTAAGATTCGCCGTTGTAGCTTCAATCT
14760024 TTTTAATTGC
Statistics
Matches: 437, Mismatches: 170, Indels: 44
0.67 0.26 0.07
Matches are distributed among these distances:
48 33 0.08
49 147 0.34
50 245 0.56
51 12 0.03
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (50 bp):
CGGGAAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCACCGC
Found at i:14759913 original size:199 final size:198
Alignment explanation
Indices: 14759331--14760035 Score: 912
Period size: 199 Copynumber: 3.6 Consensus size: 198
14759321 CTTCTGTCTG
* * *
14759331 TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGTTCCAATGCACCGCT
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
* ** ** *
14759396 AGGAAAGTAAGATTCGCCGTTGTGATTTCAATCTTTTAATTGCAATGTCAAGG-AGATAAGATTC
66 AGGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAATTGCAATGTCGGGGAAG-CAAGATTC
* * * * * * *
14759460 GTTGTTATAACTTTAATCTGTTCCACTGCACCGCCAGAGAAGTAAGATTCGCCGTTGTGGCCTCA
130 GCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCCGTTGTGGCCTTA
*
14759525 ATTT
195 ATCT
* * * *
14759529 TTTAATTG-TATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTCAACCTGTTCCACTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
*** *
14759593 CTAAAAGTAAGATTCACCGTTGTGGCCTT-AATCTTTTAATTGCAATATCGGGGAAGCAAGATTC
66 AGGAAAGTAAGATTCACCGTTGTGG-CTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTC
*
14759657 GCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGAAAGTAAGATTCGCCGTTGTGGCCTTA
130 GCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCCGTTGTGGCCTTA
14759722 ATCT
195 ATCT
* * ** * *
14759726 TTTAATTGCAATATCGGGGAAGCAATATTTGCTGTTGTAGCTTCAATTTGTTCCACTGCACCGCC
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
* * * *
14759791 AGGGAAGTAAGATTCACCGTTGTGGCTTAAATCTATTTAACTACAATGTCGGGGAAGCAAGATTC
66 AGGAAAGTAAGATTCACCGTTGTGGCTTCAATCT-TTTAATTGCAATGTCGGGGAAGCAAGATTC
* * * *
14759856 GCCGTTGTAGCTTCAATCTGTTCCACTGCACCACTTGGGAAGTAAGATTCGCCGTTGTGGCTTTA
130 GCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCCGTTGTGGCCTTA
14759921 ATCT
195 ATCT
* *** *
14759925 TTTAATTACAATGTCGGGGAAATGAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCT
1 TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
* ***
14759990 TGGAAAGTAAGATTTGTCGTTGTGGCTTCAATCTTTTTAATTGCAA
66 AGGAAAGTAAGATTCACCGTTGTGGCTTCAATC-TTTTAATTGCAA
14760036 ACTATGGTTT
Statistics
Matches: 438, Mismatches: 63, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
197 168 0.38
198 88 0.20
199 181 0.41
200 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (198 bp):
TTTAATTGCAATGTCGGGGAAGCAAGATTCACCGTTGTAGCTTCAATCTGTTCCACTGCACCGCC
AGGAAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTAATTGCAATGTCGGGGAAGCAAGATTCG
CTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCCGTTGTGGCCTTAA
TCT
Found at i:14772383 original size:3 final size:3
Alignment explanation
Indices: 14772369--14772573 Score: 308
Period size: 3 Copynumber: 69.0 Consensus size: 3
14772359 AATGAGTAAC
*
14772369 TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
14772417 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14772465 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * ** *
14772513 TAA TAA TGA TAA AAA TAA TAA TAA TGG TAA AAA TAA -AA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
14772559 T-A TGAG TAA TAA TAA
1 TAA T-AA TAA TAA TAA
14772574 AACAATAGTA
Statistics
Matches: 183, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
2 6 0.03
3 176 0.96
4 1 0.01
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:14772599 original size:26 final size:25
Alignment explanation
Indices: 14772523--14772585 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
14772513 TAATAATGAT
14772523 AAAAATAATAATAATG-GTAAAAATA
1 AAAAATAATAAT-ATGAGTAAAAATA
*
14772548 AAAAATAATAATATGAGTAATAATA
1 AAAAATAATAATATGAGTAAAAATA
*
14772573 AAACAATAGTAAT
1 AAA-AATAATAAT
14772586 TGGTGTAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 3 0.09
25 23 0.68
26 8 0.24
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (25 bp):
AAAAATAATAATATGAGTAAAAATA
Found at i:14773851 original size:22 final size:23
Alignment explanation
Indices: 14773808--14773852 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14773798 TTATTTAGGT
***
14773808 AAAATTTAAAAACATTTTAATAA
1 AAAATTTAAAAACATCCAAATAA
14773831 AAAATTTAAAAA-ATCCAAATAA
1 AAAATTTAAAAACATCCAAATAA
14773853 CCCATAGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (23 bp):
AAAATTTAAAAACATCCAAATAA
Found at i:14777388 original size:107 final size:108
Alignment explanation
Indices: 14777146--14777440 Score: 411
Period size: 109 Copynumber: 2.7 Consensus size: 108
14777136 TTTTTTGAAT
*** *
14777146 CCAACAGTAATAAAAAAAATTACTTTTTTTCGTGTTAAAATCAGGTATCACTATACGAAAAAAAG
1 CCAACAGTAATAAAAATTTTTACTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAAG
*
14777211 T--AAAAAAAAA-TTTGGGTGCTGGCCTGTCAATGGCCGACAC
66 TAAAAAAAAAAATTTTGGGTGCTAGCCTGTCAATGGCCGACAC
* * * *
14777251 ACAACAGTAAAAAAAAATTTACTT-TTTTTTTTCGTGTTAAAATTAGGTATCAGTATACGAAAAA
1 CCAACAGT-AATAAAAATTT--TTACTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAA
*
14777315 AAGTAAAAAAAAAAATTTTGGGTGCTAGCCTGTCAATGGCCGGCAC
63 AAGTAAAAAAAAAAATTTTGGGTGCTAGCCTGTCAATGGCCGACAC
* *
14777361 CCAACAGTAATAAAAATTTTTACTTTTTTTTCGTGTTAAAATCAGATATCAGTATATG-AAAAAA
1 CCAACAGTAATAAAAATTTTTAC-TTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAA
14777425 GTAAAAAAAAAAATTT
65 GTAAAAAAAAAAATTT
14777441 AGGTGCTGGC
Statistics
Matches: 166, Mismatches: 16, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
105 7 0.04
106 7 0.04
107 43 0.26
108 24 0.14
109 50 0.30
110 35 0.21
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (108 bp):
CCAACAGTAATAAAAATTTTTACTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAAG
TAAAAAAAAAAATTTTGGGTGCTAGCCTGTCAATGGCCGACAC
Found at i:14777401 original size:109 final size:109
Alignment explanation
Indices: 14777146--14777440 Score: 440
Period size: 107 Copynumber: 2.7 Consensus size: 109
14777136 TTTTTTGAAT
* *
14777146 CCAACAGTAATAAAAAAAATTAC-TTTTTTTCGTGTTAAAATCAGGTATCACTATACGAAAAAAA
1 CCAACAGTAATAAAAAAATTTACTTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAA
*
14777210 GT--AAAAAAAAA-TTTGGGTGCTGGCCTGTCAATGGCCGACAC
66 GTAAAAAAAAAAATTTTGGGTGCTAGCCTGTCAATGGCCGACAC
* *
14777251 ACAACAGTAA-AAAAAAATTTACTTTTTTTTTTCGTGTTAAAATTAGGTATCAGTATACGAAAAA
1 CCAACAGTAATAAAAAAATTTAC--TTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAA
*
14777315 AAGTAAAAAAAAAAATTTTGGGTGCTAGCCTGTCAATGGCCGGCAC
64 AAGTAAAAAAAAAAATTTTGGGTGCTAGCCTGTCAATGGCCGACAC
** * *
14777361 CCAACAGTAATAAAAATTTTTACTTTTTTTTCGTGTTAAAATCAGATATCAGTATATG-AAAAAA
1 CCAACAGTAATAAAAAAATTTACTTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAA
14777425 GTAAAAAAAAAAATTT
66 GTAAAAAAAAAAATTT
14777441 AGGTGCTGGC
Statistics
Matches: 171, Mismatches: 12, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
104 11 0.06
105 9 0.05
107 41 0.24
108 22 0.13
109 41 0.24
110 37 0.22
111 10 0.06
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (109 bp):
CCAACAGTAATAAAAAAATTTACTTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAA
GTAAAAAAAAAAATTTTGGGTGCTAGCCTGTCAATGGCCGACAC
Found at i:14778702 original size:217 final size:214
Alignment explanation
Indices: 14778266--14778919 Score: 875
Period size: 217 Copynumber: 3.0 Consensus size: 214
14778256 CGAAAAAGGG
* *
14778266 AAAAAAAAA-TTTTGGGTGCTAGCTTGTCAATGGCCAGCACCCAACAGTAATAAAAAATTTTTAC
1 AAAAAAAAATTTTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAACAGTAATAAAAAATTTTTAC
* * * *
14778330 TTTTTTTCGTATTAAAATCAGGTATCAGTATACGAAAAAAAGTAAAAAAAA-TTTGGGTGCTGGC
66 TTTTTTTTGTGTTAAAATCAGGTATCAGTATACGAAAAAAGGAAAAAAAAATTTTGGGTGCTGGC
* * **
14778394 CTGTCATTGGCCGGCACCCAACAGTAATAATTTTTTTTACTTTTTTTCTCGTGTTAAAATTAGGT
131 CTGTCAATGGCAGGCACCCAACAGTAA-AA--AATTTTACTTTTTTT-TCGTGTTAAAATTAGGT
14778459 ATCAGTATACAAAAAAAAGT-AA
192 ATCAGTATACAAAAAAAAGTAAA
* * * *
14778481 AAAAACAAATTTTTGAGTGTTAGCCTGTCAATGGCCGGCACCCAACAGTAATTAAAAAAATTTTA
1 AAAAAAAAATTTTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAACAGTAA-TAAAAAATTTTTA
14778546 CTTTTTTTTGTGTTAAAATCAGGTATCAGTATACG-AAAAAGGAAAAAAAAATTTTGGGTGCTGG
65 CTTTTTTTTGTGTTAAAATCAGGTATCAGTATACGAAAAAAGGAAAAAAAAATTTTGGGTGCTGG
14778610 CCTGTCAATGGCAGGCACCCAACAGTAAAAAATTTTACTTTTTTTTCGTGTTAAAATTAGGTATC
130 CCTGTCAATGGCAGGCACCCAACAGTAAAAAATTTTACTTTTTTTTCGTGTTAAAATTAGGTATC
14778675 AGTATACAAAAAAAAGTAAA
195 AGTATACAAAAAAAAGTAAA
* * * * * *
14778695 AAAAAAAATTTTTTTTGGGTGCTGGCCTGTTAATGGCCGACACCAAACAATAATAAAAAATTTTT
1 AAAAAAAA--ATTTTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAACAGTAATAAAAAA--TTT
* * * *
14778760 TTACTTTTTTTTCGTGTTCAAATTAGGTATCAGTATACGAAAAAAGTAAAAAAAAAAATTTTTTA
62 TTACTTTTTTTT-GTGTTAAAATCAGGTATCAGTATACGAAAAAAG--GAAAAAAAAA--TTTTG
* * *
14778825 GGTGCTGGCCTGTCAATGGCTGGCACCCAACAGTAAAAAAAAATTTACTTTTTTTTCTTGTTAAA
122 GGTGCTGGCCTGTCAATGGCAGGCACCCAACAGT--AAAAAATTTTACTTTTTTTTCGTGTTAAA
*
14778890 ATTAGGTATCAATATACGAAAAAAAAGTAA
185 ATTAGGTATCAGTATAC-AAAAAAAAGTAA
14778920 TGGCCAGCAC
Statistics
Matches: 390, Mismatches: 32, Indels: 23
0.88 0.07 0.05
Matches are distributed among these distances:
213 37 0.09
214 22 0.06
215 15 0.04
216 88 0.23
217 97 0.25
218 24 0.06
219 6 0.02
221 9 0.02
223 37 0.09
225 43 0.11
226 12 0.03
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.32
Consensus pattern (214 bp):
AAAAAAAAATTTTTGGGTGCTAGCCTGTCAATGGCCGGCACCCAACAGTAATAAAAAATTTTTAC
TTTTTTTTGTGTTAAAATCAGGTATCAGTATACGAAAAAAGGAAAAAAAAATTTTGGGTGCTGGC
CTGTCAATGGCAGGCACCCAACAGTAAAAAATTTTACTTTTTTTTCGTGTTAAAATTAGGTATCA
GTATACAAAAAAAAGTAAA
Found at i:14778992 original size:83 final size:79
Alignment explanation
Indices: 14778847--14778996 Score: 203
Period size: 83 Copynumber: 1.8 Consensus size: 79
14778837 TCAATGGCTG
* * * *
14778847 GCACCCAACAGTAAAAAAAAATTTACTTTTTTTTCTTGTTAAAATTAGGTATCAATATACGAAAA
1 GCACCCAACAGTAAAAAAAAATTTACTTTTTTTTCGTGTTAAAATCAAGTATCAATACACGAAAA
14778912 AAAAGTAATGGCCA
66 AAAAGTAATGGCCA
*
14778926 GCACCCAACAGTAATAAAAAAAAATTT-CTACTTTTTTTCGTGTTCAAATCAAGTATCAATACAC
1 GCACCCAACAG---TAAAAAAAAATTTACT--TTTTTTTCGTGTTAAAATCAAGTATCAATACAC
14778990 GAAAAAA
61 GAAAAAA
14778997 GTAAAAAAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
79 11 0.18
81 2 0.03
82 13 0.21
83 35 0.57
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.29
Consensus pattern (79 bp):
GCACCCAACAGTAAAAAAAAATTTACTTTTTTTTCGTGTTAAAATCAAGTATCAATACACGAAAA
AAAAGTAATGGCCA
Found at i:14779218 original size:111 final size:107
Alignment explanation
Indices: 14779077--14779301 Score: 360
Period size: 108 Copynumber: 2.1 Consensus size: 107
14779067 GAAAAAAGAA
* *
14779077 TTTTTTTTACTTTTTTTGTATACTGATACCTGATTTTAACACGAAAAAAAAAGTAAAATTTTTTT
1 TTTTTTTTACTTTTTTTCTATACTGATACCTAATTTTAACACG--AAAAAAAGTAAAA-TTTTTT
14779142 TATTACTGTTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATT
63 TATTACTGTTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATT
* *
14779187 TTTTTTTTACTTTTTTTCCTATATTGGTACCTAATTTTAACACGAAAAAAAGTAAAATTTTTTTA
1 TTTTTTTTACTTTTTTT-CTATACTGATACCTAATTTTAACACGAAAAAAAGTAAAATTTTTTTA
* *
14779252 TTACTGTTGGGTGCCGGCCATTGACAGGCCAGCATCCAAAATT
65 TTACTGTTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATT
14779295 TTTTTTT
1 TTTTTTT
14779302 CCTTTTTCTT
Statistics
Matches: 108, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
108 56 0.52
109 13 0.12
110 17 0.16
111 22 0.20
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (107 bp):
TTTTTTTTACTTTTTTTCTATACTGATACCTAATTTTAACACGAAAAAAAGTAAAATTTTTTTAT
TACTGTTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATT
Found at i:14779315 original size:16 final size:16
Alignment explanation
Indices: 14779294--14779325 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14779284 CATCCAAAAT
*
14779294 TTTTTTTTCCTTTTTC
1 TTTTTTCTCCTTTTTC
14779310 TTTTTTCTCCTTTTTC
1 TTTTTTCTCCTTTTTC
14779326 GTATATCAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTTCTCCTTTTTC
Found at i:14779940 original size:44 final size:45
Alignment explanation
Indices: 14779887--14779975 Score: 153
Period size: 44 Copynumber: 2.0 Consensus size: 45
14779877 TGCTTTTAAA
*
14779887 GCCCTGAAACCAATTCGACTAGTCATTAGATACGGCTTTT-TTTT
1 GCCCTGAAACCAATTCGAATAGTCATTAGATACGGCTTTTGTTTT
*
14779931 GCCCTGAAACCAATTCGAATAGTCATTAGATTCGGCTTTTGTTTT
1 GCCCTGAAACCAATTCGAATAGTCATTAGATACGGCTTTTGTTTT
14779976 ACTTTTTAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
44 38 0.90
45 4 0.10
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (45 bp):
GCCCTGAAACCAATTCGAATAGTCATTAGATACGGCTTTTGTTTT
Found at i:14780962 original size:109 final size:105
Alignment explanation
Indices: 14780834--14781219 Score: 428
Period size: 109 Copynumber: 3.6 Consensus size: 105
14780824 CCATTAATAA
*
14780834 AAAAAAATTTACTTTTTTTTTCGTGTTAAAATTAGGTATCAGTATACGAAAAAAATAATAAAAAA
1 AAAAAAATTTAC-TTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAATAA-AAAAAA
* * *
14780899 ATTTTTTTAGGTGCTGGTCTGTCAATGGCCGGCATCCAACAGTAAT
64 A---TTTT-GGTGTTGGCCTGTCAATGGCCGGCACCCAACAGTAAT
* *
14780945 AAAAAAATTTAC-TTTTTTTCGTGTTAAAATTAGGTATCAGTATATGAAAAAAAGT---AAAAAA
1 AAAAAAATTTACTTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAA-TAAAAAAAAA
* * *
14781006 --TTGGTGTTGGCCTGTTAATGGCCGGCACCCAACGGTAAA
65 TTTTGGTGTTGGCCTGTCAATGGCCGGCACCCAACAGTAAT
*
14781045 AAAAATAATTTTTAACTTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAGTAAAAAA
1 AAAAA-AA--TTT-ACTTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAA--ATAAAA
*
14781110 AAAAATTTTGGATGTTGGCCTGTCAATGGCCGACACCCAACAGTAAT
60 AAAAATTTTGG-TGTTGGCCTGTCAATGGCCGGCACCCAACAGTAAT
**** *
14781157 AAATTTTTTTTAC-TTTTTTTCGTGTTAAAATCAAGTATCAGTATAC-AAAAAAAGTAAAAAAAA
1 AAA-AAAATTTACTTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAA-TAAAAAAAA
14781220 TTTCCTTTTT
Statistics
Matches: 239, Mismatches: 20, Indels: 37
0.81 0.07 0.12
Matches are distributed among these distances:
100 36 0.15
101 4 0.02
103 3 0.01
104 2 0.01
105 39 0.16
106 14 0.06
107 7 0.03
108 32 0.13
109 48 0.20
110 4 0.02
111 16 0.07
112 34 0.14
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (105 bp):
AAAAAAATTTACTTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAATAAAAAAAAAT
TTTGGTGTTGGCCTGTCAATGGCCGGCACCCAACAGTAAT
Found at i:14781195 original size:108 final size:107
Alignment explanation
Indices: 14780848--14781219 Score: 427
Period size: 108 Copynumber: 3.5 Consensus size: 107
14780838 AAATTTACTT
* * ** *
14780848 TTTTTTTCGTGTTAAAATTAGGTATCAGTATACGAAAAAAATAATAAAAAAATTTTTTTAGGTGC
1 TTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAGTAA-AAAAAAA-AATTTT-GGTGT
* * ***
14780913 TGGTCTGTCAATGGCCGGCATCCAACAGTAATAAA-AAAATTTAC
63 TGGCCTGTCAATGGCCGGCACCCAACAGTAATAAATATTTTTTAC
* *
14780957 TTTTTTTCGTGTTAAAATTAGGTATCAGTATATGAAAAAAAGT-----AAAAAA--TTGGTGTTG
1 TTTTTTTCGTGTTAAAATCAGGTATCAGTATACG-AAAAAAGTAAAAAAAAAAATTTTGGTGTTG
* * * *
14781015 GCCTGTTAATGGCCGGCACCCAACGGTAAAAAAAATAATTTTTAAC
65 GCCTGTCAATGGCCGGCACCCAACAGT--AATAAAT-ATTTTTTAC
14781061 TTTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAGTAAAAAAAAAAATTTTGGATGTT
1 -TTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAGTAAAAAAAAAAATTTTGG-TGTT
* *
14781126 GGCCTGTCAATGGCCGACACCCAACAGTAATAAATTTTTTTTAC
64 GGCCTGTCAATGGCCGGCACCCAACAGTAATAAATATTTTTTAC
* *
14781170 TTTTTTTCGTGTTAAAATCAAGTATCAGTATACAAAAAAAGTAAAAAAAA
1 TTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAGTAAAAAAAA
14781220 TTTCCTTTTT
Statistics
Matches: 225, Mismatches: 24, Indels: 29
0.81 0.09 0.10
Matches are distributed among these distances:
100 29 0.13
101 2 0.01
102 5 0.02
104 17 0.08
105 32 0.14
108 48 0.21
109 46 0.20
110 13 0.06
111 4 0.02
112 29 0.13
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (107 bp):
TTTTTTTCGTGTTAAAATCAGGTATCAGTATACGAAAAAAGTAAAAAAAAAAATTTTGGTGTTGG
CCTGTCAATGGCCGGCACCCAACAGTAATAAATATTTTTTAC
Found at i:14784990 original size:18 final size:18
Alignment explanation
Indices: 14784952--14784990 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
14784942 TATAAGAAAG
* * *
14784952 TATTTTAATTTTAGAATA
1 TATTTTAATTTAAAAAAA
14784970 TATTTTAATTTAAAAAAA
1 TATTTTAATTTAAAAAAA
14784988 TAT
1 TAT
14784991 AATTATATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
TATTTTAATTTAAAAAAA
Found at i:14791765 original size:17 final size:19
Alignment explanation
Indices: 14791743--14791777 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
14791733 TTTAAGTAAA
14791743 AATATTG-AAG-AATTTCG
1 AATATTGTAAGAAATTTCG
14791760 AATATTGTAAGAAATTTC
1 AATATTGTAAGAAATTTC
14791778 AAGAGCTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.37
Consensus pattern (19 bp):
AATATTGTAAGAAATTTCG
Found at i:14792387 original size:2 final size:2
Alignment explanation
Indices: 14792380--14792412 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14792370 ATATAAATAT
14792380 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
14792413 CTTATCATTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:14796644 original size:18 final size:18
Alignment explanation
Indices: 14796611--14796663 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
14796601 ATTCAACTAA
*
14796611 ACCCAATCCAAACCCAAAT
1 ACCCAA-CCCAACCCAAAT
** *
14796630 ATTCAACCCAACCCAATT
1 ACCCAACCCAACCCAAAT
14796648 ACCCAACCCAACCCAA
1 ACCCAACCCAACCCAA
14796664 TCATAAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 24 0.86
19 4 0.14
ACGTcount: A:0.43, C:0.45, G:0.00, T:0.11
Consensus pattern (18 bp):
ACCCAACCCAACCCAAAT
Found at i:14796796 original size:9 final size:9
Alignment explanation
Indices: 14796784--14796833 Score: 73
Period size: 9 Copynumber: 5.6 Consensus size: 9
14796774 TCAATTAAGT
14796784 TAATTCGGG
1 TAATTCGGG
14796793 TAATTCGGG
1 TAATTCGGG
*
14796802 TAATTCGGT
1 TAATTCGGG
14796811 TAATTCGGG
1 TAATTCGGG
* *
14796820 TCATTCGGT
1 TAATTCGGG
14796829 TAATT
1 TAATT
14796834 TTTAACCAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.22, C:0.12, G:0.26, T:0.40
Consensus pattern (9 bp):
TAATTCGGG
Found at i:14796805 original size:18 final size:18
Alignment explanation
Indices: 14796784--14796833 Score: 82
Period size: 18 Copynumber: 2.8 Consensus size: 18
14796774 TCAATTAAGT
*
14796784 TAATTCGGGTAATTCGGG
1 TAATTCGGTTAATTCGGG
14796802 TAATTCGGTTAATTCGGG
1 TAATTCGGTTAATTCGGG
*
14796820 TCATTCGGTTAATT
1 TAATTCGGTTAATT
14796834 TTTAACCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.22, C:0.12, G:0.26, T:0.40
Consensus pattern (18 bp):
TAATTCGGTTAATTCGGG
Found at i:14796812 original size:27 final size:27
Alignment explanation
Indices: 14796782--14796833 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
14796772 ATTCAATTAA
14796782 GTTAATTCGGGTAATTCGGGTAATTCG
1 GTTAATTCGGGTAATTCGGGTAATTCG
* *
14796809 GTTAATTCGGGTCATTCGGTTAATT
1 GTTAATTCGGGTAATTCGGGTAATT
14796834 TTTAACCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.12, G:0.27, T:0.40
Consensus pattern (27 bp):
GTTAATTCGGGTAATTCGGGTAATTCG
Found at i:14796907 original size:14 final size:14
Alignment explanation
Indices: 14796875--14796917 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
14796865 GTTAATTCGG
**
14796875 TTAACCGACCAAA-
1 TTAACCGAAAAAAT
14796888 TTAACCGAAAAAAT
1 TTAACCGAAAAAAT
14796902 TTAACCGAAAAAAT
1 TTAACCGAAAAAAT
14796916 TT
1 TT
14796918 TGGTTCGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.51, C:0.19, G:0.07, T:0.23
Consensus pattern (14 bp):
TTAACCGAAAAAAT
Found at i:14801844 original size:11 final size:11
Alignment explanation
Indices: 14801830--14801974 Score: 125
Period size: 11 Copynumber: 13.9 Consensus size: 11
14801820 TTTTTTTAAA
14801830 TTTTAAAATAT
1 TTTTAAAATAT
14801841 TTTTAAAATACTTT
1 TTTTAAAATA---T
**
14801855 TTTTTTAAT-T
1 TTTTAAAATAT
*
14801865 TTTT-TAA-A-
1 TTTTAAAATAT
14801873 TTTTAAAATAT
1 TTTTAAAATAT
14801884 TTTTAAAATAT
1 TTTTAAAATAT
14801895 TTTTAAAATAT
1 TTTTAAAATAT
14801906 TTTT---A-A-
1 TTTTAAAATAT
14801912 TTTTAAAATAT
1 TTTTAAAATAT
14801923 TTTTAAAATAT
1 TTTTAAAATAT
14801934 TTTTAAAATACT
1 TTTTAAAATA-T
**
14801946 TTTT-TTA-AT
1 TTTTAAAATAT
14801955 TTTTAAAA-AT
1 TTTTAAAATAT
14801965 TTTTAAAATA
1 TTTTAAAATA
14801975 AAAATGGGCC
Statistics
Matches: 112, Mismatches: 7, Indels: 30
0.75 0.05 0.20
Matches are distributed among these distances:
6 4 0.04
7 1 0.01
8 5 0.04
9 11 0.10
10 19 0.17
11 59 0.53
12 5 0.04
14 8 0.07
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:14801869 original size:82 final size:81
Alignment explanation
Indices: 14801780--14801974 Score: 252
Period size: 82 Copynumber: 2.4 Consensus size: 81
14801770 AAGCATATTT
* * * *
14801780 ATTTTTTTAATTTTAAAATATTTTTTACATACTTTTT-AATTTTTTTTAAATTTTAAAATATTTT
1 ATTTTTTTAATTTTAAAATATTTTTAAAATA-TTTTTAAAATATTTTT-AATTTTAAAATATTTT
***
14801844 TAAAATACTTTTT-TTTTA
64 TAAAATA-TTTTTAAAATA
14801862 ATTTTTTTAAATTTTAAAATATTTTTAAAATATTTTTAAAATATTTTTAATTTTAAAATATTTTT
1 ATTTTTTT-AATTTTAAAATATTTTTAAAATATTTTTAAAATATTTTTAATTTTAAAATATTTTT
14801927 AAAATATTTTTAAAATA
65 AAAATATTTTTAAAATA
*
14801944 CTTTTTTTAATTTTTAAAA-ATTTTTAAAATA
1 ATTTTTTTAA-TTTTAAAATATTTTTAAAATA
14801975 AAAATGGGCC
Statistics
Matches: 101, Mismatches: 8, Indels: 9
0.86 0.07 0.08
Matches are distributed among these distances:
81 19 0.19
82 53 0.52
83 29 0.29
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.59
Consensus pattern (81 bp):
ATTTTTTTAATTTTAAAATATTTTTAAAATATTTTTAAAATATTTTTAATTTTAAAATATTTTTA
AAATATTTTTAAAATA
Found at i:14806070 original size:33 final size:33
Alignment explanation
Indices: 14806033--14806102 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
14806023 ATTATTTAAA
* *
14806033 TATGATTTGAACATGCTTTTGAGTATGTTTAGG
1 TATGATTTGAACATACTTTTGAGAATGTTTAGG
* * *
14806066 TATGATTTGAACATATTTTTGGGAATGTTTTGG
1 TATGATTTGAACATACTTTTGAGAATGTTTAGG
14806099 TATG
1 TATG
14806103 GTTGATAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.24, C:0.04, G:0.24, T:0.47
Consensus pattern (33 bp):
TATGATTTGAACATACTTTTGAGAATGTTTAGG
Found at i:14816134 original size:15 final size:15
Alignment explanation
Indices: 14816114--14816142 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
14816104 AATTAAAATT
14816114 TTATTATTTTATTTA
1 TTATTATTTTATTTA
14816129 TTATTATTTTATTT
1 TTATTATTTTATTT
14816143 TGTTTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTATTATTTTATTTA
Found at i:14818506 original size:15 final size:14
Alignment explanation
Indices: 14818486--14818524 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
14818476 TCTTGCTCTT
14818486 TCATATTATATCATA
1 TCATATTATAT-ATA
14818501 TCATATTATATATA
1 TCATATTATATATA
*
14818515 T-ATATAATAT
1 TCATATTATAT
14818525 TATAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.35
14 4 0.17
15 11 0.48
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (14 bp):
TCATATTATATATA
Found at i:14835915 original size:11 final size:11
Alignment explanation
Indices: 14835895--14835927 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
14835885 TCCCAAAATT
14835895 GAAAAGAAAAA
1 GAAAAGAAAAA
*
14835906 GAAGAGAAAAA
1 GAAAAGAAAAA
14835917 GAAAAGAAAAA
1 GAAAAGAAAAA
14835928 TGTTGTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (11 bp):
GAAAAGAAAAA
Found at i:14838010 original size:48 final size:47
Alignment explanation
Indices: 14837936--14838118 Score: 199
Period size: 48 Copynumber: 3.7 Consensus size: 47
14837926 TTTTCACCTT
* *
14837936 AAGTGCCAATATCATAGCCCGAAGCCAACTCAATAAATCATGCACTCG
1 AAGTGCAAATATCATGGCCCGAAGCCAACTCAATAAATCATGCAC-CG
* * *
14837984 AAGTGCAAATATCATGGCTCGTAGCCAACTCAATAAATCATGCACCCA
1 AAGTGCAAATATCATGGCCCGAAGCCAACTCAATAAATCATGCA-CCG
*
14838032 AAGTGCAAATATCATGGCCC-ATAGCTAACTCAATATATAT-ATCTCGCACCTG
1 AAGTGCAAATATCATGGCCCGA-AGCCAACTCAATA-A-ATCA--T-GCACC-G
* *
14838084 AAGTGCCAATATCATGGCCTGAAGCCAACTCAATA
1 AAGTGCAAATATCATGGCCCGAAGCCAACTCAATA
14838119 TATCCCTAAT
Statistics
Matches: 114, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
48 72 0.63
49 3 0.03
50 2 0.02
51 3 0.03
52 33 0.29
53 1 0.01
ACGTcount: A:0.37, C:0.27, G:0.15, T:0.22
Consensus pattern (47 bp):
AAGTGCAAATATCATGGCCCGAAGCCAACTCAATAAATCATGCACCG
Found at i:14838697 original size:21 final size:20
Alignment explanation
Indices: 14838669--14838707 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
14838659 CAAAACTTGT
14838669 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
14838689 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
14838708 CAAAATACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:14839657 original size:96 final size:95
Alignment explanation
Indices: 14839486--14839674 Score: 288
Period size: 96 Copynumber: 2.0 Consensus size: 95
14839476 TAAGATGATT
*
14839486 AAATATCTCATGACTTGATTCGCAATTGTTGATATTGAATATCGAGAATTGGACTGAAATGAATA
1 AAATATCTCATGACTTGATTCGCAATTGTTGATATTAAATATCGAGAATTGGACTGAAATGAATA
*
14839551 AAATATAAATAAGCATGATAACAAATTGAAA
66 AAATAGAAATAAGCATGAT-ACAAATTGAAA
* ** * * *
14839582 AAATGTCTCATGACTTGATTCGTGATTGTTGATATTAAATGTTGAGAATTGGATTGAAATGAATA
1 AAATATCTCATGACTTGATTCGCAATTGTTGATATTAAATATCGAGAATTGGACTGAAATGAATA
*
14839647 AAATAGAAATAAGCATGATATAAATTGA
66 AAATAGAAATAAGCATGATACAAATTGA
14839675 TAAGTGTCTT
Statistics
Matches: 84, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
95 8 0.10
96 76 0.90
ACGTcount: A:0.43, C:0.07, G:0.17, T:0.32
Consensus pattern (95 bp):
AAATATCTCATGACTTGATTCGCAATTGTTGATATTAAATATCGAGAATTGGACTGAAATGAATA
AAATAGAAATAAGCATGATACAAATTGAAA
Found at i:14839928 original size:19 final size:19
Alignment explanation
Indices: 14839905--14839959 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
14839895 GTGTGGGTTT
*
14839905 ATGCACTTCGTGTGCCAGT
1 ATGCACTTCGTGTGCCAGG
* *
14839924 TTGCACTTTGTGTGCCAGG
1 ATGCACTTCGTGTGCCAGG
*
14839943 ATGCATTTCG-GTGCCAG
1 ATGCACTTCGTGTGCCAG
14839960 ATTGGTGTCG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 7 0.23
19 23 0.77
ACGTcount: A:0.15, C:0.24, G:0.29, T:0.33
Consensus pattern (19 bp):
ATGCACTTCGTGTGCCAGG
Found at i:14841007 original size:44 final size:45
Alignment explanation
Indices: 14840947--14841040 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 45
14840937 TTTAAATATT
* * *
14840947 AATATATTAACTCTTTTGGAGCTTTCAACTAATTTTGTACTACCC
1 AATATATTAACTCTTTTGGAGCTTTAAACTAAATTTGTACTACCA
* *
14840992 AATA-ATTAGCTCTTTTGGAGCTTTAAACTAAATTTGTAGTACCA
1 AATATATTAACTCTTTTGGAGCTTTAAACTAAATTTGTACTACCA
14841036 AATAT
1 AATAT
14841041 TGCATTAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 39 0.91
45 4 0.09
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (45 bp):
AATATATTAACTCTTTTGGAGCTTTAAACTAAATTTGTACTACCA
Found at i:14845217 original size:16 final size:17
Alignment explanation
Indices: 14845186--14845218 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14845176 TTCATAAGTA
14845186 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
14845203 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
14845219 GCTCTATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:14845322 original size:46 final size:46
Alignment explanation
Indices: 14845255--14845395 Score: 246
Period size: 46 Copynumber: 3.1 Consensus size: 46
14845245 TATATTCCCG
* **
14845255 TCATGATGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATA
1 TCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
14845301 TCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
1 TCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
*
14845347 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
1 TCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
14845393 TCA
1 TCA
14845396 GAGAGCACAC
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 91 1.00
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.39
Consensus pattern (46 bp):
TCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
Found at i:14847577 original size:29 final size:30
Alignment explanation
Indices: 14847525--14847593 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
14847515 CCACCCTTAA
* * *
14847525 CATATTTGCACTATTAGTCCTTCAACTTTT
1 CATATTTACACTATTAATCCTTCAAATTTT
14847555 CATATTTACACT-TTAATCCTTCAAATTTT
1 CATATTTACACTATTAATCCTTCAAATTTT
*
14847584 GAGTATTTAC
1 CA-TATTTAC
14847594 TCTTGGGCCA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.47
30 18 0.53
ACGTcount: A:0.28, C:0.20, G:0.06, T:0.46
Consensus pattern (30 bp):
CATATTTACACTATTAATCCTTCAAATTTT
Found at i:14852444 original size:27 final size:26
Alignment explanation
Indices: 14852406--14852521 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 26
14852396 AGCATGGCTG
* *
14852406 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
14852432 TCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGA-ACAGATAA-TGTGGCAGAGCCA
14852460 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
14852487 CCAGATCAGATATTTGTGGCATAACCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
14852514 CCAAAACA
1 CCAGAACA
14852522 CTTCCTCCAT
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.05
27 57 0.74
28 16 0.21
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:14852470 original size:54 final size:54
Alignment explanation
Indices: 14852406--14852521 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 54
14852396 AGCATGGCTG
* * *
14852406 CCAGAACAGATA-ATGTGACAGAGTCATCAGATACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATTGTGGCAGAACCA
* * *
14852460 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAACCA
*
14852514 CCAAAACA
1 CCAGAACA
14852522 CTTCCTCCAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAACCA
Found at i:14857847 original size:27 final size:28
Alignment explanation
Indices: 14857812--14857868 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 28
14857802 ATATAAAAAG
* *
14857812 TATAAATAATATAAAGCTCTAC-TTTAA
1 TATAAATAATATAAAACTATACTTTTAA
*
14857839 TATACATAATATAAAACTATACTTTTAA
1 TATAAATAATATAAAACTATACTTTTAA
14857867 TA
1 TA
14857869 AATATTAGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.49, C:0.11, G:0.02, T:0.39
Consensus pattern (28 bp):
TATAAATAATATAAAACTATACTTTTAA
Found at i:14862332 original size:8 final size:8
Alignment explanation
Indices: 14862316--14862351 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
14862306 TTTCATTTGC
*
14862316 TTTGGTTT
1 TTTGTTTT
14862324 TTTGTTTT
1 TTTGTTTT
14862332 TTTGTTTT
1 TTTGTTTT
*
14862340 TTTTTTTT
1 TTTGTTTT
14862348 TTTG
1 TTTG
14862352 GCAAAGAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (8 bp):
TTTGTTTT
Found at i:14862349 original size:15 final size:15
Alignment explanation
Indices: 14862320--14862348 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14862310 ATTTGCTTTG
14862320 GTTTTTTGTTTTTTT
1 GTTTTTTGTTTTTTT
14862335 GTTTTTT-TTTTTTT
1 GTTTTTTGTTTTTTT
14862349 TTGGCAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (15 bp):
GTTTTTTGTTTTTTT
Found at i:14866905 original size:24 final size:23
Alignment explanation
Indices: 14866861--14866905 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
14866851 GGTACTGTAG
*
14866861 TTCATTTCATGTTATTTTGGTAT
1 TTCATTTCATGTTATTATGGTAT
* *
14866884 TTCATTTTCTTGTTCTTATGGT
1 TTCA-TTTCATGTTATTATGGT
14866906 CAATTTCAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 4 0.22
24 14 0.78
ACGTcount: A:0.13, C:0.11, G:0.13, T:0.62
Consensus pattern (23 bp):
TTCATTTCATGTTATTATGGTAT
Found at i:14876220 original size:30 final size:30
Alignment explanation
Indices: 14876186--14876244 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
14876176 AGTTCATACC
14876186 CCAAATATGCCATTCAAGTGCCATACATAA
1 CCAAATATGCCATTCAAGTGCCATACATAA
*
14876216 CCAAATATGCCATTCAAGTTCCATACATA
1 CCAAATATGCCATTCAAGTGCCATACATA
14876245 TAGCTTAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.27, G:0.08, T:0.25
Consensus pattern (30 bp):
CCAAATATGCCATTCAAGTGCCATACATAA
Found at i:14880212 original size:51 final size:51
Alignment explanation
Indices: 14880129--14880247 Score: 143
Period size: 51 Copynumber: 2.3 Consensus size: 51
14880119 TAAAAAATAT
* * *
14880129 TTTTTATTTGGTGTTGGCTTTCCTGAATCCAGCACCAGTTTTTTTATTGAAA
1 TTTTT-TTTGGTGTTGGCTTTCCTGAATCCAGCACCAGTGTTGTTAATGAAA
* * *
14880181 TTTTTTTTGGTGTTGGCTTTCTTG-TTGCCAGCACCAGTGTTGTTAATGCAA
1 TTTTTTTTGGTGTTGGCTTTCCTGAAT-CCAGCACCAGTGTTGTTAATGAAA
14880232 TTTTCTTTT-GTGTTGG
1 TTTT-TTTTGGTGTTGG
14880248 TGTTCTCGTT
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
50 1 0.02
51 49 0.83
52 9 0.15
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.50
Consensus pattern (51 bp):
TTTTTTTTGGTGTTGGCTTTCCTGAATCCAGCACCAGTGTTGTTAATGAAA
Found at i:14880266 original size:51 final size:51
Alignment explanation
Indices: 14880129--14880267 Score: 133
Period size: 51 Copynumber: 2.7 Consensus size: 51
14880119 TAAAAAATAT
* * * *
14880129 TTTTTATTTGGTGTTGGCTTTC-CTGAAT-CCAGCACCAGTTTTTTTATTGAAA
1 TTTTT-TTTGGTGTTGGCTTTCTC-G-TTGCCAGCACCAGTGTTGTTAATGAAA
* *
14880181 TTTTTTTTGGTGTTGGCTTTCTTGTTGCCAGCACCAGTGTTGTTAATGCAA
1 TTTTTTTTGGTGTTGGCTTTCTCGTTGCCAGCACCAGTGTTGTTAATGAAA
* *
14880232 TTTTCTTTT-GTGTTGG-TGTTCTCGTTGTCGGCACCA
1 TTTT-TTTTGGTGTTGGCT-TTCTCGTTGCCAGCACCA
14880268 CCAGGCTATA
Statistics
Matches: 74, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
50 2 0.03
51 63 0.85
52 9 0.12
ACGTcount: A:0.14, C:0.17, G:0.22, T:0.48
Consensus pattern (51 bp):
TTTTTTTTGGTGTTGGCTTTCTCGTTGCCAGCACCAGTGTTGTTAATGAAA
Found at i:14887534 original size:2 final size:2
Alignment explanation
Indices: 14887527--14887553 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14887517 TTATTTCTTG
14887527 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
14887554 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:14889296 original size:50 final size:50
Alignment explanation
Indices: 14889225--14889409 Score: 361
Period size: 50 Copynumber: 3.7 Consensus size: 50
14889215 ACATGCCAAA
14889225 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
14889275 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
14889325 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
*
14889375 GCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
14889410 TTACCCAAAT
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
50 134 1.00
ACGTcount: A:0.17, C:0.33, G:0.24, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
Found at i:14889525 original size:13 final size:13
Alignment explanation
Indices: 14889504--14889535 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14889494 GCTTGGATCA
*
14889504 TCATCAAATAAAT
1 TCATAAAATAAAT
14889517 TCATAAAATAAAT
1 TCATAAAATAAAT
14889530 TCATAA
1 TCATAA
14889536 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:14889783 original size:30 final size:30
Alignment explanation
Indices: 14889747--14889804 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
14889737 CCTCGACTCT
*
14889747 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
14889777 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
14889805 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:14896879 original size:50 final size:50
Alignment explanation
Indices: 14896755--14897003 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
14896745 GATAATAACA
* * ** * *
14896755 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
14896806 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
14896856 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
14896906 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
14896961 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
14897004 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:14896933 original size:100 final size:104
Alignment explanation
Indices: 14896754--14897003 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
14896744 TGATAATAAC
**
14896754 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
14896819 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
14896856 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
14896919 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
14896961 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
14897004 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:14897119 original size:13 final size:13
Alignment explanation
Indices: 14897098--14897129 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14897088 GCTTGGATCA
*
14897098 TCATCAAATAAAT
1 TCATAAAATAAAT
14897111 TCATAAAATAAAT
1 TCATAAAATAAAT
14897124 TCATAA
1 TCATAA
14897130 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:14897906 original size:18 final size:19
Alignment explanation
Indices: 14897879--14897918 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
14897869 TTCTATTCTG
*
14897879 TTTCTTTTCTTCCTTTT-T
1 TTTCTATTCTTCCTTTTGT
*
14897897 TTTCTATTCTTTCTTTTGT
1 TTTCTATTCTTCCTTTTGT
14897916 TTT
1 TTT
14897919 ATGTATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.03, C:0.17, G:0.03, T:0.78
Consensus pattern (19 bp):
TTTCTATTCTTCCTTTTGT
Found at i:14897935 original size:5 final size:5
Alignment explanation
Indices: 14897922--14897994 Score: 64
Period size: 5 Copynumber: 14.6 Consensus size: 5
14897912 TTGTTTTATG
14897922 TATATA TATAA TATAA TATAA TAT-A T-TAA TAATAA TATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA
* *
14897970 CATAA TCATTAC TATAA TATAA TAT
1 TATAA T-A-TAA TATAA TATAA TAT
14897995 TTTTTTAACA
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.05
4 6 0.11
5 35 0.61
6 10 0.18
7 3 0.05
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:14897947 original size:19 final size:19
Alignment explanation
Indices: 14897923--14897965 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
14897913 TGTTTTATGT
14897923 ATATATATAAT-ATAATATA
1 ATATAT-TAATAATAATATA
14897942 ATATATTAATAATAATATA
1 ATATATTAATAATAATATA
14897961 ATATA
1 ATATA
14897966 AAAACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
ATATATTAATAATAATATA
Found at i:14897975 original size:24 final size:25
Alignment explanation
Indices: 14897929--14897993 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
14897919 ATGTATATAT
* *
14897929 ATAATATAATATAATATATTAAT-A
1 ATAATATAATATAATAAAATAATCA
14897953 ATAATATAATATAA-AAACATAATCA
1 ATAATATAATATAATAAA-ATAATCA
* *
14897978 TTACTATAATATAATA
1 ATAATATAATATAATA
14897994 TTTTTTTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 2 0.06
24 18 0.53
25 13 0.38
26 1 0.03
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (25 bp):
ATAATATAATATAATAAAATAATCA
Found at i:14898521 original size:21 final size:21
Alignment explanation
Indices: 14898495--14898534 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14898485 GAACAAAAAT
*
14898495 GACATGTTGAACAGGTTTCAG
1 GACATGTTGAACAAGTTTCAG
14898516 GACATGTTGAACAAGTTTC
1 GACATGTTGAACAAGTTTC
14898535 TAGGTAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (21 bp):
GACATGTTGAACAAGTTTCAG
Found at i:14900992 original size:23 final size:22
Alignment explanation
Indices: 14900940--14900992 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
14900930 TCCACGTCTT
*
14900940 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
14900962 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
14900985 TTTCTTTT
1 TTTCTTTT
14900993 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:14903345 original size:22 final size:23
Alignment explanation
Indices: 14903320--14903379 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
14903310 TGGACTGAAT
14903320 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
14903342 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
14903364 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
14903380 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:14903347 original size:4 final size:4
Alignment explanation
Indices: 14903329--14903362 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
14903319 TATAAAAATT
14903329 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
14903363 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:14904782 original size:10 final size:10
Alignment explanation
Indices: 14904763--14904822 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
14904753 TGAAATTCTA
14904763 AAAGATAAAT
1 AAAGATAAAT
14904773 ACAA-ATAAAT
1 A-AAGATAAAT
*
14904783 AAAGATAATT
1 AAAGATAAAT
14904793 AAAGATAAAT
1 AAAGATAAAT
14904803 AAAGATAAAT
1 AAAGATAAAT
14904813 GAAA-ATAAAT
1 -AAAGATAAAT
14904823 CCTAAAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:14905821 original size:29 final size:30
Alignment explanation
Indices: 14905757--14905823 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
14905747 TAAATTGGCC
14905757 CTAAATTTTTAAAATTAAGAAGTAGAGGAA
1 CTAAATTTTTAAAATTAAGAAGTAGAGGAA
*
14905787 CTAAATTCTTTAAAA-TAA-AATTAG-GGAAA
1 CTAAATT-TTTAAAATTAAGAAGTAGAGG-AA
14905816 CTAAATTT
1 CTAAATTT
14905824 CGACTGTATG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
28 3 0.09
29 14 0.41
30 10 0.29
31 7 0.21
ACGTcount: A:0.49, C:0.06, G:0.12, T:0.33
Consensus pattern (30 bp):
CTAAATTTTTAAAATTAAGAAGTAGAGGAA
Found at i:14906283 original size:4 final size:4
Alignment explanation
Indices: 14906276--14906329 Score: 108
Period size: 4 Copynumber: 13.5 Consensus size: 4
14906266 TAAATAAATA
14906276 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
14906324 ATAC AT
1 ATAC AT
14906330 TGTTTAGATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:14906877 original size:17 final size:16
Alignment explanation
Indices: 14906853--14906890 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
14906843 TTATAAAAGT
*
14906853 ATAAAAT-ATCTTA-A
1 ATAAAATAATATTATA
14906867 ATAAAATAATATTATA
1 ATAAAATAATATTATA
14906883 ATAAAATA
1 ATAAAATA
14906891 TACAAATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 7 0.33
15 5 0.24
16 9 0.43
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (16 bp):
ATAAAATAATATTATA
Found at i:14907714 original size:29 final size:28
Alignment explanation
Indices: 14907635--14907723 Score: 87
Period size: 29 Copynumber: 3.2 Consensus size: 28
14907625 ATACTGATAA
* *
14907635 ATAATTTT--ATA-TTTGAATATTTATT
1 ATAATTTTAAATATTTTTAATAATTATT
*
14907660 ATGATTTTAAATATTTTTAATAAATTATT
1 ATAATTTTAAATATTTTTAAT-AATTATT
*
14907689 ATAATTCTTAAA-ATTTTTAAATAATTTTT
1 ATAATT-TTAAATATTTTT-AATAATTATT
14907718 ATAATT
1 ATAATT
14907724 AAATCGAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
25 7 0.13
27 3 0.06
28 6 0.11
29 29 0.55
30 8 0.15
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.56
Consensus pattern (28 bp):
ATAATTTTAAATATTTTTAATAATTATT
Found at i:14907880 original size:12 final size:12
Alignment explanation
Indices: 14907840--14907882 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
14907830 ATGTCATCAC
14907840 TTAATTATAAAAA
1 TTAATTA-AAAAA
* **
14907853 TAAATTAAAATT
1 TTAATTAAAAAA
14907865 TTAATTAAAAAA
1 TTAATTAAAAAA
14907877 TTAATT
1 TTAATT
14907883 TATTTTTTAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
12 18 0.75
13 6 0.25
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TTAATTAAAAAA
Found at i:14910810 original size:49 final size:49
Alignment explanation
Indices: 14910738--14910835 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
14910728 AATAGGTTAA
14910738 ACTGTCGTCGTTTTGATGATTTTGATTTTAGGGGTTGGTGATTGAAGTT
1 ACTGTCGTCGTTTTGATGATTTTGATTTTAGGGGTTGGTGATTGAAGTT
14910787 ACTGTCGTCGTTTTGATGATTTTGATTTTAGGGGTTGGTGATTGAAGTT
1 ACTGTCGTCGTTTTGATGATTTTGATTTTAGGGGTTGGTGATTGAAGTT
14910836 TGAACAATAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.16, C:0.06, G:0.31, T:0.47
Consensus pattern (49 bp):
ACTGTCGTCGTTTTGATGATTTTGATTTTAGGGGTTGGTGATTGAAGTT
Found at i:14911202 original size:20 final size:20
Alignment explanation
Indices: 14911177--14911242 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
14911167 CCAAGGGTCA
14911177 GTTTTACTATTAATTTCATG
1 GTTTTACTATTAATTTCATG
* * **
14911197 GTTTTACCTCTTGAGGTCA--
1 GTTTTA-CTATTAATTTCATG
14911216 GTTTTACTATTAATTTCATG
1 GTTTTACTATTAATTTCATG
14911236 GTTTTAC
1 GTTTTAC
14911243 CTCTTGAGGG
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
18 8 0.23
19 6 0.17
20 13 0.37
21 8 0.23
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.52
Consensus pattern (20 bp):
GTTTTACTATTAATTTCATG
Found at i:14911226 original size:39 final size:39
Alignment explanation
Indices: 14911172--14911251 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
14911162 AAGGTCCAAG
14911172 GGTCAGTTTTACTATTAATTTCATGGTTTTACCTCTTGA
1 GGTCAGTTTTACTATTAATTTCATGGTTTTACCTCTTGA
14911211 GGTCAGTTTTACTATTAATTTCATGGTTTTACCTCTTGA
1 GGTCAGTTTTACTATTAATTTCATGGTTTTACCTCTTGA
14911250 GG
1 GG
14911252 GGTGTGATGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.20, C:0.15, G:0.17, T:0.47
Consensus pattern (39 bp):
GGTCAGTTTTACTATTAATTTCATGGTTTTACCTCTTGA
Found at i:14914648 original size:39 final size:38
Alignment explanation
Indices: 14914605--14914752 Score: 170
Period size: 39 Copynumber: 3.8 Consensus size: 38
14914595 ACCAGCTCGA
* * *
14914605 AGCCTGCGAGACTTTAGCCCGGACGTAATTCCAGCATAT
1 AGCCTGCG-GACTTAAGTCCGGACATAATTCCAGCATAT
* * * *
14914644 AGCCTACGGGCCTTAAGTCCGAACATAATTCCAACATAT
1 AGCCTGC-GGACTTAAGTCCGGACATAATTCCAGCATAT
*
14914683 AGCCTGCGGACCTTAAGTCCGGACATAATCCCAGCATAT
1 AGCCTGCGGA-CTTAAGTCCGGACATAATTCCAGCATAT
* *
14914722 AGCCTGCGGACCTTAAGTCTGGATATAATTC
1 AGCCTGCGGA-CTTAAGTCCGGACATAATTC
14914753 ATCACTGAGT
Statistics
Matches: 92, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
38 2 0.02
39 89 0.97
40 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
AGCCTGCGGACTTAAGTCCGGACATAATTCCAGCATAT
Found at i:14915759 original size:39 final size:38
Alignment explanation
Indices: 14915716--14915824 Score: 128
Period size: 39 Copynumber: 2.8 Consensus size: 38
14915706 ACCAGCTCGA
* *
14915716 AGCCTGCAGGACTTTAGCCCGAACGTAATTCCAGCATAT
1 AGCCTGC-GGACTTAAGCCCGAACATAATTCCAGCATAT
* *
14915755 AGCCTGCGGACCTTAAGTCCGGACATAATTCCAGCATAT
1 AGCCTGCGGA-CTTAAGCCCGAACATAATTCCAGCATAT
* * *
14915794 AGCCTGCGGACCTTAAGTCCGGATATAATTC
1 AGCCTGCGGA-CTTAAGCCCGAACATAATTC
14915825 ATCACTGAGT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
38 3 0.05
39 61 0.95
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (38 bp):
AGCCTGCGGACTTAAGCCCGAACATAATTCCAGCATAT
Found at i:14919424 original size:118 final size:118
Alignment explanation
Indices: 14919210--14919456 Score: 440
Period size: 118 Copynumber: 2.1 Consensus size: 118
14919200 TTTTCCTTAA
*
14919210 TTTAACTTACATTCTAACTTTTTACTAAATTACCCTTTAATATAACTTATAAAATTACTAAATCA
1 TTTAA-TTACATTCTAACTTTTCACTAAATTACCCTTTAATATAACTTATAAAATTACTAAATCA
14919275 TGTCCATAAATGTCCATAATATAAGTATATGGTATAATTACCATCTAAGGAAGG
65 TGTCCATAAATGTCCATAATATAAGTATATGGTATAATTACCATCTAAGGAAGG
* *
14919329 TTTAATTACATTCTAACTTTTCACTAAATTTCCCTTTAATATAACTTATAAAATTACTAACTCAT
1 TTTAATTACATTCTAACTTTTCACTAAATTACCCTTTAATATAACTTATAAAATTACTAAATCAT
* *
14919394 GTCGATAAATGTCCATAATATAAGTATATGGTATAATTACCCTCTAAGGAAGG
66 GTCCATAAATGTCCATAATATAAGTATATGGTATAATTACCATCTAAGGAAGG
14919447 TTTAATTACA
1 TTTAATTACA
14919457 CAATTGGTCT
Statistics
Matches: 123, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
118 118 0.96
119 5 0.04
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (118 bp):
TTTAATTACATTCTAACTTTTCACTAAATTACCCTTTAATATAACTTATAAAATTACTAAATCAT
GTCCATAAATGTCCATAATATAAGTATATGGTATAATTACCATCTAAGGAAGG
Found at i:14925149 original size:23 final size:25
Alignment explanation
Indices: 14925123--14925187 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 25
14925113 TTTAATATAT
14925123 TATTGCTATTATTTTTATG-T-TTC
1 TATTGCTATTATTTTTATGTTATTC
*
14925146 TATT--TA-TATTTATTTTGTTATTC
1 TATTGCTATTATTT-TTATGTTATTC
*
14925169 TAATGCTATTATTATTTAT
1 TATTGCTATTATT-TTTAT
14925188 CTAATTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 11
0.70 0.07 0.24
Matches are distributed among these distances:
20 5 0.16
21 6 0.19
22 1 0.03
23 10 0.31
25 2 0.06
26 7 0.22
27 1 0.03
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.65
Consensus pattern (25 bp):
TATTGCTATTATTTTTATGTTATTC
Found at i:14925200 original size:15 final size:14
Alignment explanation
Indices: 14925132--14925260 Score: 70
Period size: 15 Copynumber: 8.9 Consensus size: 14
14925122 TTATTGCTAT
14925132 TATTTTTATGTT-TC
1 TATTTTTAT-TTATC
*
14925146 TATTTATATTTAT-
1 TATTTTTATTTATC
*
14925159 T-TTGTTATTCTAATGC
1 TATTTTTATT-T-AT-C
*
14925175 TATTATTATTTATC
1 TATTTTTATTTATC
14925189 TAATTTTTATTTATC
1 T-ATTTTTATTTATC
* *
14925204 TATTTATATTTCTAC
1 TATTTTTATTTAT-C
*
14925219 TATTATTATATT-TC
1 TATTTTTAT-TTATC
*
14925233 TATTTATTATATT-TT
1 TATTT-TTAT-TTATC
*
14925248 TATTTCTATTTAT
1 TATTTTTATTTAT
14925261 ATACTAATAT
Statistics
Matches: 92, Mismatches: 12, Indels: 22
0.73 0.10 0.17
Matches are distributed among these distances:
12 6 0.07
13 6 0.07
14 32 0.35
15 37 0.40
16 4 0.04
17 7 0.08
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.66
Consensus pattern (14 bp):
TATTTTTATTTATC
Found at i:14925213 original size:29 final size:28
Alignment explanation
Indices: 14925132--14925239 Score: 78
Period size: 29 Copynumber: 3.8 Consensus size: 28
14925122 TTATTGCTAT
*
14925132 TATTTTTATGTTTCTATTTATATTTAT-
1 TATTTTTATATTTCTATTTATATTTATC
* * * *
14925159 TTTGTTATTCTAATGCTA-TTATTATTTATC
1 TAT-TT-TTATATTTCTATTTA-TATTTATC
*
14925189 TAATTTTTAT-TTATCTATTTATATTTCTAC
1 T-ATTTTTATATT-TCTATTTATATTTAT-C
*
14925219 TATTATTATATTTCTATTTAT
1 TATTTTTATATTTCTATTTAT
14925240 TATATTTTTA
Statistics
Matches: 61, Mismatches: 11, Indels: 16
0.69 0.12 0.18
Matches are distributed among these distances:
27 2 0.03
28 6 0.10
29 42 0.69
30 10 0.16
31 1 0.02
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (28 bp):
TATTTTTATATTTCTATTTATATTTATC
Found at i:14925245 original size:23 final size:24
Alignment explanation
Indices: 14925216--14925286 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 24
14925206 TTTATATTTC
14925216 TACTATTATTATATTTCTATTTAT
1 TACTATTATTATATTTCTATTTAT
14925240 TA-TATT-TT-TATTTCTATTTAT
1 TACTATTATTATATTTCTATTTAT
*
14925261 ATACTAATATTAT-TTTC-A-TTAT
1 -TACTATTATTATATTTCTATTTAT
14925283 TACT
1 TACT
14925287 TTTTTCCTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
21 17 0.40
22 8 0.19
23 8 0.19
24 8 0.19
25 1 0.02
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (24 bp):
TACTATTATTATATTTCTATTTAT
Found at i:14925336 original size:152 final size:149
Alignment explanation
Indices: 14925249--14925597 Score: 479
Period size: 152 Copynumber: 2.3 Consensus size: 149
14925239 TTATATTTTT
* *
14925249 ATTTCTAT-TTATATACTAATATTATTTTCAT-TATTACT-TTTTTCCTTATATATGTTTTTTTA
1 ATTT-TATATTATATACT-ATAATATTTTCATATATTA-TGTATTT-CTTATATATGTTTTTTTA
* *
14925311 CTCTTGTTATTAACATTCTATTTATTTATTTATTTATTTTACATTTTTTGTTATGATCTATTTTA
62 CTCTTGTTATTAACATTCTATTTATTTATTAATTTATTTTACATTTTATGTTATGATCTATTTTA
*
14925376 ACTTTTTATATAATGCTTATTTCA
127 ACTTTCTATATAAT-CTTATTTCA
* *
14925400 ATTTTATACATTATTTACTTTAATATTTTCATATATTATGTATTTCTTATATATGTTTTTTTACT
1 ATTTTAT--ATTATATACTATAATATTTTCATATATTATGTATTTCTTATATATGTTTTTTTACT
* *
14925465 CTTGTTATTAACATTCTATTTATTTATTTATTTATTTTACATTTTTTGTTATGATCTATTTTAAC
64 CTTGTTATTAACATTCTATTTATTTATTAATTTATTTTACATTTTATGTTATGATCTATTTTAAC
*
14925530 TTTTTATATAATGCTTATTTCA
129 TTTCTATATAAT-CTTATTTCA
* *
14925552 ATTTTATACATTATTTACTTTAATATTTTCATATATTATGTATTTC
1 ATTTTAT--ATTATATACTATAATATTTTCATATATTATGTATTTC
14925598 AAACTTTTTT
Statistics
Matches: 189, Mismatches: 4, Indels: 9
0.94 0.02 0.04
Matches are distributed among these distances:
150 3 0.02
151 4 0.02
152 165 0.87
153 17 0.09
ACGTcount: A:0.26, C:0.09, G:0.03, T:0.61
Consensus pattern (149 bp):
ATTTTATATTATATACTATAATATTTTCATATATTATGTATTTCTTATATATGTTTTTTTACTCT
TGTTATTAACATTCTATTTATTTATTAATTTATTTTACATTTTATGTTATGATCTATTTTAACTT
TCTATATAATCTTATTTCA
Found at i:14930486 original size:19 final size:20
Alignment explanation
Indices: 14930462--14930508 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
14930452 TTGTGAAACT
* *
14930462 TAATGCACATG-ATGTGATG
1 TAATGCAAATGCATGAGATG
14930481 TAATGCAAATGCATGAGATG
1 TAATGCAAATGCATGAGATG
14930501 -AATGCAAA
1 TAATGCAAA
14930509 ACTAAAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (20 bp):
TAATGCAAATGCATGAGATG
Found at i:14934014 original size:16 final size:17
Alignment explanation
Indices: 14933993--14934031 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
14933983 GAATGATATT
14933993 AATAAAGG-CGA-GAATA
1 AATAAAGGCCGATG-ATA
14934009 AATAAAGGCCGATGATA
1 AATAAAGGCCGATGATA
14934026 AATAAA
1 AATAAA
14934032 ATGAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.38
17 12 0.57
18 1 0.05
ACGTcount: A:0.56, C:0.08, G:0.21, T:0.15
Consensus pattern (17 bp):
AATAAAGGCCGATGATA
Found at i:14934419 original size:3 final size:3
Alignment explanation
Indices: 14934411--14934533 Score: 72
Period size: 3 Copynumber: 41.0 Consensus size: 3
14934401 AATGATATGG
* * * * * *
14934411 TAA TAA TAA TAG TGA TAA T-A CAA TAA TAA AAA TAA -AG TAGA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* * * * *
14934455 TAA CAA TAA TAA TAA TAGA -AA AAA TAGA AAA TAG TAA TAA TAA AAA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TAA TAA TAA TAA TAA TAA
* * *
14934501 TAA AAA TAA TAT TAA TAA TAA TAC TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14934534 CAAAAATTAA
Statistics
Matches: 87, Mismatches: 27, Indels: 12
0.69 0.21 0.10
Matches are distributed among these distances:
2 3 0.03
3 80 0.92
4 4 0.05
ACGTcount: A:0.66, C:0.02, G:0.06, T:0.26
Consensus pattern (3 bp):
TAA
Found at i:14935771 original size:36 final size:37
Alignment explanation
Indices: 14935731--14935808 Score: 88
Period size: 36 Copynumber: 2.2 Consensus size: 37
14935721 AATATAATAC
*** *
14935731 ATTTTACTTTTTTTTTAAA-TTCGATAAATATTTTGA
1 ATTTTACTTTTTTAAAAAATTTCGATAAACATTTTGA
*
14935767 ATTTT-GTTTTTTAAAAAATTTCGATAAACATTTTGA
1 ATTTTACTTTTTTAAAAAATTTCGATAAACATTTTGA
*
14935803 AATTTA
1 ATTTTA
14935809 TATATTTAAC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
35 9 0.26
36 25 0.74
ACGTcount: A:0.35, C:0.05, G:0.06, T:0.54
Consensus pattern (37 bp):
ATTTTACTTTTTTAAAAAATTTCGATAAACATTTTGA
Found at i:14938011 original size:22 final size:22
Alignment explanation
Indices: 14937986--14938034 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 22
14937976 AAATAATTAA
*
14937986 ATTAATTATTTTTAATATT-TTT
1 ATTAATAATTTTTAA-ATTATTT
14938008 ATT-ATAATTTTTAAATTAATTT
1 ATTAATAATTTTTAAATT-ATTT
14938030 ATTAA
1 ATTAA
14938035 ATAAAACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 3 0.13
21 10 0.43
22 9 0.39
23 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
ATTAATAATTTTTAAATTATTT
Found at i:14965268 original size:16 final size:16
Alignment explanation
Indices: 14965242--14965288 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
14965232 TTGCAGGACT
14965242 GAAGC-AAGAAAAATC
1 GAAGCAAAGAAAAATC
* *
14965257 GAAGCAAAGAAAGAGC
1 GAAGCAAAGAAAAATC
*
14965273 AAAGCAAAGCAAAAAT
1 GAAGCAAAG-AAAAAT
14965289 TGATCAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
15 5 0.20
16 16 0.64
17 4 0.16
ACGTcount: A:0.62, C:0.13, G:0.21, T:0.04
Consensus pattern (16 bp):
GAAGCAAAGAAAAATC
Found at i:14969074 original size:16 final size:16
Alignment explanation
Indices: 14969048--14969094 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
14969038 TTGCAGGACT
14969048 GAAGC-AAGAAAAATC
1 GAAGCAAAGAAAAATC
* *
14969063 GAAGCAAAGAAAGAGC
1 GAAGCAAAGAAAAATC
*
14969079 AAAGCAAAGCAAAAAT
1 GAAGCAAAG-AAAAAT
14969095 TGATCAAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
15 5 0.20
16 16 0.64
17 4 0.16
ACGTcount: A:0.62, C:0.13, G:0.21, T:0.04
Consensus pattern (16 bp):
GAAGCAAAGAAAAATC
Done.