Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 47 of 153
Found at i:15643582 original size:16 final size:17
Alignment explanation
Indices: 15643551--15643583 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
15643541 AATTTTTATC
15643551 CAATTTATACCCTAATT
1 CAATTTATACCCTAATT
*
15643568 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
15643584 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.42
Consensus pattern (17 bp):
CAATTTATACCCTAATT
Found at i:15644083 original size:3 final size:3
Alignment explanation
Indices: 15644075--15644104 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
15644065 ATATATTAGT
15644075 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15644105 ATATCTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:15644528 original size:5 final size:5
Alignment explanation
Indices: 15644520--15644562 Score: 59
Period size: 5 Copynumber: 8.2 Consensus size: 5
15644510 TATTTATTTC
*
15644520 ATAAT ATAAT ATAAT ATAAT ATAATT ATAAT ATTATT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAA-T ATAAT A-TAAT ATAAT A
15644563 ATTTAACATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 25 0.74
6 9 0.26
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
ATAAT
Found at i:15660261 original size:32 final size:32
Alignment explanation
Indices: 15660225--15660290 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
15660215 AAATGGTTGA
*
15660225 ATTTCAAATTTCGGGATTAAGGACTAAATTGT
1 ATTTCAAATTTCAGGATTAAGGACTAAATTGT
15660257 ATTTCAAATTTCAGGATTAAGGACTAAATTGT
1 ATTTCAAATTTCAGGATTAAGGACTAAATTGT
15660289 AT
1 AT
15660291 AAAGGTTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (32 bp):
ATTTCAAATTTCAGGATTAAGGACTAAATTGT
Found at i:15661800 original size:17 final size:18
Alignment explanation
Indices: 15661761--15661801 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
15661751 CCTAAAATTT
*
15661761 CACACGTCCGTGTGGGCC
1 CACACGCCCGTGTGGGCC
*
15661779 TACACGCCCGTGT-GGCC
1 CACACGCCCGTGTGGGCC
15661796 CACACG
1 CACACG
15661802 TTTCAATTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.15, C:0.41, G:0.29, T:0.15
Consensus pattern (18 bp):
CACACGCCCGTGTGGGCC
Found at i:15667739 original size:30 final size:30
Alignment explanation
Indices: 15667703--15667761 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
15667693 TTATTAAAAA
* *
15667703 GAATAACTATTAATCTTGATAAAGTTAACT
1 GAATAACCATTAATCTTGATAAAATTAACT
15667733 GAATAACCATTAATCTTGATAAAATTAAC
1 GAATAACCATTAATCTTGATAAAATTAAC
15667762 CGTTATAGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.34
Consensus pattern (30 bp):
GAATAACCATTAATCTTGATAAAATTAACT
Found at i:15667759 original size:15 final size:15
Alignment explanation
Indices: 15667711--15667760 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
15667701 AAGAATAACT
15667711 ATTAATCTTGATAAA
1 ATTAATCTTGATAAA
* *
15667726 GTTAA-C-TGAATAACC
1 ATTAATCTTG-ATAA-A
15667741 ATTAATCTTGATAAA
1 ATTAATCTTGATAAA
15667756 ATTAA
1 ATTAA
15667761 CCGTTATAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 8
0.69 0.10 0.21
Matches are distributed among these distances:
13 2 0.07
14 5 0.19
15 13 0.48
16 5 0.19
17 2 0.07
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (15 bp):
ATTAATCTTGATAAA
Found at i:15669305 original size:30 final size:30
Alignment explanation
Indices: 15669271--15669331 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
15669261 ATGACGCCAC
*
15669271 GTCATCTGTATCCCTTTCCAATAGTTTTAT
1 GTCATCTGTATCCATTTCCAATAGTTTTAT
15669301 GTCATCTGTATCCATTTCCAATAGTTTTAT
1 GTCATCTGTATCCATTTCCAATAGTTTTAT
15669331 G
1 G
15669332 CCACATCCGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.46
Consensus pattern (30 bp):
GTCATCTGTATCCATTTCCAATAGTTTTAT
Found at i:15672859 original size:3 final size:3
Alignment explanation
Indices: 15672835--15672905 Score: 92
Period size: 3 Copynumber: 24.0 Consensus size: 3
15672825 AATATCCTTG
* * *
15672835 TTA TTT TTA -TA TTA TTGA -TA TTA TTA TTC TTA TTA TTG TTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
15672879 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
15672906 GTATGTACTC
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
2 3 0.05
3 55 0.93
4 1 0.02
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:15673079 original size:22 final size:22
Alignment explanation
Indices: 15673036--15673080 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
15673026 ATTATTACCA
* *
15673036 ATATTTATATATGTTTTAGTAT
1 ATATGTATATATGATTTAGTAT
15673058 ATATGTATATAT-ATTTACGTAT
1 ATATGTATATATGATTTA-GTAT
15673080 A
1 A
15673081 GGCTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.53
Consensus pattern (22 bp):
ATATGTATATATGATTTAGTAT
Found at i:15673134 original size:31 final size:31
Alignment explanation
Indices: 15673099--15673159 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
15673089 TTTATTACTT
* *
15673099 TATTTCAATATCT-TTATTGTATTTGTTTTTG
1 TATTTCAATAT-TGTTATTATATTTATTTTTG
15673130 TATTTCAATATTGTTATTATATTTATTTTT
1 TATTTCAATATTGTTATTATATTTATTTTT
15673160 ATTATTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 1 0.04
31 26 0.96
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.66
Consensus pattern (31 bp):
TATTTCAATATTGTTATTATATTTATTTTTG
Found at i:15673524 original size:24 final size:22
Alignment explanation
Indices: 15673493--15673549 Score: 69
Period size: 24 Copynumber: 2.5 Consensus size: 22
15673483 ACTATATGTG
*
15673493 TATATATTATGTAAATGTTTTAA
1 TATATATTATGTAAACGTTTT-A
* *
15673516 TATGATATTATATATACGTTTTA
1 TAT-ATATTATGTAAACGTTTTA
15673539 TATATATTATG
1 TATATATTATG
15673550 AACATGTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 7 0.24
23 7 0.24
24 15 0.52
ACGTcount: A:0.37, C:0.02, G:0.09, T:0.53
Consensus pattern (22 bp):
TATATATTATGTAAACGTTTTA
Found at i:15680852 original size:489 final size:489
Alignment explanation
Indices: 15679934--15680911 Score: 1956
Period size: 489 Copynumber: 2.0 Consensus size: 489
15679924 TCTACTTTAA
15679934 GAAGAACGTCCAAACTTTTCTGGAAAAATCATCAATAAAGGTTAGCATATAATTAGCTCCACCTC
1 GAAGAACGTCCAAACTTTTCTGGAAAAATCATCAATAAAGGTTAGCATATAATTAGCTCCACCTC
15679999 TCGAAGGCACTCTGGATGGCCCCCACAGGTCAGAATGAATATACTCCAACATTCCCTTCGTGTTA
66 TCGAAGGCACTCTGGATGGCCCCCACAGGTCAGAATGAATATACTCCAACATTCCCTTCGTGTTA
15680064 TGGATTCCTCTGGTGAATCGAACTCTCTTTTGCTTCCCAAAAACACAATGCTTATAAAAATTTAG
131 TGGATTCCTCTGGTGAATCGAACTCTCTTTTGCTTCCCAAAAACACAATGCTTATAAAAATTTAG
15680129 TTTGCAAATTCCTTGCCCATTAAGAAGTCCTCTTTTGCTCAATTCTGCCATGCCATTCTCACTCA
196 TTTGCAAATTCCTTGCCCATTAAGAAGTCCTCTTTTGCTCAATTCTGCCATGCCATTCTCACTCA
15680194 TTTACCCTAGCCGCATATGCCAAATTTTAGTAATATCATCATCTGACAAGGAAGAGGAAGCGATA
261 TTTACCCTAGCCGCATATGCCAAATTTTAGTAATATCATCATCTGACAAGGAAGAGGAAGCGATA
15680259 GCTGTATCACTAGTAAAAATAGAACCCTGCAAAAAATATAACTTGACAGTCTTTCTCTGCCCTTT
326 GCTGTATCACTAGTAAAAATAGAACCCTGCAAAAAATATAACTTGACAGTCTTTCTCTGCCCTTT
15680324 CATTACAACAAGGGAACCTTTAGAAATCTTTAAAACCCCACTTTCAGCTGTGTATCTGTACCCTT
391 CATTACAACAAGGGAACCTTTAGAAATCTTTAAAACCCCACTTTCAGCTGTGTATCTGTACCCTT
15680389 TTGAGTCACGAGTACTCAGTGAAATTAAATTTTT
456 TTGAGTCACGAGTACTCAGTGAAATTAAATTTTT
15680423 GAAGAACGTCCAAACTTTTCTGGAAAAATCATCAATAAAGGTTAGCATATAATTAGCTCCACCTC
1 GAAGAACGTCCAAACTTTTCTGGAAAAATCATCAATAAAGGTTAGCATATAATTAGCTCCACCTC
15680488 TCGAAGGCACTCTGGATGGCCCCCACAGGTCAGAATGAATATACTCCAACATTCCCTTCGTGTTA
66 TCGAAGGCACTCTGGATGGCCCCCACAGGTCAGAATGAATATACTCCAACATTCCCTTCGTGTTA
15680553 TGGATTCCTCTGGTGAATCGAACTCTCTTTTGCTTCCCAAAAACACAATGCTTATAAAAATTTAG
131 TGGATTCCTCTGGTGAATCGAACTCTCTTTTGCTTCCCAAAAACACAATGCTTATAAAAATTTAG
15680618 TTTGCAAATTCCTTGCCCATTAAGAAGTCCTCTTTTGCTCAATTCTGCCATGCCATTCTCACTCA
196 TTTGCAAATTCCTTGCCCATTAAGAAGTCCTCTTTTGCTCAATTCTGCCATGCCATTCTCACTCA
15680683 TTTACCCTAGCCGCATATGCCAAATTTTAGTAATATCATCATCTGACAAGGAAGAGGAAGCGATA
261 TTTACCCTAGCCGCATATGCCAAATTTTAGTAATATCATCATCTGACAAGGAAGAGGAAGCGATA
15680748 GCTGTATCACTAGTAAAAATAGAACCCTGCAAAAAATATAACTTGACAGTCTTTCTCTGCCCTTT
326 GCTGTATCACTAGTAAAAATAGAACCCTGCAAAAAATATAACTTGACAGTCTTTCTCTGCCCTTT
15680813 CATTACAACAAGGGAACCTTTAGAAATCTTTAAAACCCCACTTTCAGCTGTGTATCTGTACCCTT
391 CATTACAACAAGGGAACCTTTAGAAATCTTTAAAACCCCACTTTCAGCTGTGTATCTGTACCCTT
15680878 TTGAGTCACGAGTACTCAGTGAAATTAAATTTTT
456 TTGAGTCACGAGTACTCAGTGAAATTAAATTTTT
15680912 TTTCAATTCT
Statistics
Matches: 489, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
489 489 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (489 bp):
GAAGAACGTCCAAACTTTTCTGGAAAAATCATCAATAAAGGTTAGCATATAATTAGCTCCACCTC
TCGAAGGCACTCTGGATGGCCCCCACAGGTCAGAATGAATATACTCCAACATTCCCTTCGTGTTA
TGGATTCCTCTGGTGAATCGAACTCTCTTTTGCTTCCCAAAAACACAATGCTTATAAAAATTTAG
TTTGCAAATTCCTTGCCCATTAAGAAGTCCTCTTTTGCTCAATTCTGCCATGCCATTCTCACTCA
TTTACCCTAGCCGCATATGCCAAATTTTAGTAATATCATCATCTGACAAGGAAGAGGAAGCGATA
GCTGTATCACTAGTAAAAATAGAACCCTGCAAAAAATATAACTTGACAGTCTTTCTCTGCCCTTT
CATTACAACAAGGGAACCTTTAGAAATCTTTAAAACCCCACTTTCAGCTGTGTATCTGTACCCTT
TTGAGTCACGAGTACTCAGTGAAATTAAATTTTT
Found at i:15681940 original size:26 final size:26
Alignment explanation
Indices: 15681911--15682036 Score: 207
Period size: 26 Copynumber: 4.8 Consensus size: 26
15681901 ATTGATAAAA
15681911 GGTTAGGTAAATGTTCCATGATAATG
1 GGTTAGGTAAATGTTCCATGATAATG
* *
15681937 GGTTTGGTAAATGTTTCATGATAATG
1 GGTTAGGTAAATGTTCCATGATAATG
*
15681963 GGTTAGGTAAATATTCCATGATAATG
1 GGTTAGGTAAATGTTCCATGATAATG
*
15681989 GGTTAGGCAAATGTTCCATGATAATG
1 GGTTAGGTAAATGTTCCATGATAATG
*
15682015 GTTTAGGTAAATGTTCCATGAT
1 GGTTAGGTAAATGTTCCATGAT
15682037 GGGCATTTCA
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 91 1.00
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.37
Consensus pattern (26 bp):
GGTTAGGTAAATGTTCCATGATAATG
Found at i:15684657 original size:10 final size:11
Alignment explanation
Indices: 15684641--15684670 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
15684631 CAATTTATGA
15684641 AAAAATAAAAT
1 AAAAATAAAAT
15684652 -AAAATAAAAT
1 AAAAATAAAAT
15684662 AAAAATAAA
1 AAAAATAAA
15684671 GAACACGCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:15684938 original size:16 final size:17
Alignment explanation
Indices: 15684917--15684954 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
15684907 TTCTATATGG
*
15684917 ATTTTACT-TTTATTTT
1 ATTTTACTATGTATTTT
15684933 ATTTTACTACTGTATTTT
1 ATTTTACTA-TGTATTTT
15684951 ATTT
1 ATTT
15684955 AAATAAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTACTATGTATTTT
Found at i:15686834 original size:20 final size:18
Alignment explanation
Indices: 15686787--15686835 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
15686777 CAAGATAAAC
15686787 ATTAAATTAA-ACTTAAT
1 ATTAAATTAATACTTAAT
15686804 ATTAAGA-TAATCACTTCAAT
1 ATTAA-ATTAAT-ACTT-AAT
15686824 ATTAAATTAATA
1 ATTAAATTAATA
15686836 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 6 0.22
20 12 0.44
ACGTcount: A:0.51, C:0.08, G:0.02, T:0.39
Consensus pattern (18 bp):
ATTAAATTAATACTTAAT
Found at i:15691973 original size:30 final size:29
Alignment explanation
Indices: 15691929--15691991 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 29
15691919 GGAGAGGTTG
15691929 ACATGCACACTAACCAAAGAAATTTTCTA
1 ACATGCACACTAACCAAAGAAATTTTCTA
15691958 ACATGCACTACTAACCAAAGAAATTTTCTA
1 ACATGCAC-ACTAACCAAAGAAATTTTCTA
15691988 ACAT
1 ACAT
15691992 ATTACGAACC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 8 0.24
30 25 0.76
ACGTcount: A:0.44, C:0.24, G:0.06, T:0.25
Consensus pattern (29 bp):
ACATGCACACTAACCAAAGAAATTTTCTA
Found at i:15695140 original size:21 final size:19
Alignment explanation
Indices: 15695084--15695143 Score: 66
Period size: 21 Copynumber: 3.0 Consensus size: 19
15695074 AGTTGCCGAA
*
15695084 CTTCTCTTCTTCTTTTTCT
1 CTTCTTTTCTTCTTTTTCT
* *
15695103 CTTCTTCTCTATTTTTTTCT
1 CTTCTTTTCT-TCTTTTTCT
15695123 CCTTCATTTTCTTCTTTTTCT
1 -CTTC-TTTTCTTCTTTTTCT
15695144 ATTAGTTGTG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
19 8 0.24
20 8 0.24
21 12 0.36
22 5 0.15
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.68
Consensus pattern (19 bp):
CTTCTTTTCTTCTTTTTCT
Found at i:15702197 original size:22 final size:23
Alignment explanation
Indices: 15702171--15702230 Score: 58
Period size: 22 Copynumber: 2.8 Consensus size: 23
15702161 AGCTGTCGAA
15702171 CTTCTCTTCTTCTTTTTC-CCTT
1 CTTCTCTTCTTCTTTTTCTCCTT
**
15702193 CTTCTC-GATT-TTTTTCTCCTT
1 CTTCTCTTCTTCTTTTTCTCCTT
15702214 CATT-T-TTCTTCTTTTTC
1 C-TTCTCTTCTTCTTTTTC
15702231 AATTAGTTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
20 6 0.20
21 10 0.33
22 14 0.47
ACGTcount: A:0.03, C:0.30, G:0.02, T:0.65
Consensus pattern (23 bp):
CTTCTCTTCTTCTTTTTCTCCTT
Found at i:15705010 original size:23 final size:22
Alignment explanation
Indices: 15704952--15705012 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
15704942 CGACACATAA
15704952 GTGCTTGAAATA-ACACACGAG
1 GTGCTTGAAATAGACACACGAG
* *
15704973 GTACCTG--ATACGACACACGAG
1 GTGCTTGAAATA-GACACACGAG
15704994 GTGCTTGAAATATGACACA
1 GTGCTTGAAATA-GACACA
15705013 TAAAGTGCCT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
19 3 0.10
21 19 0.61
23 9 0.29
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (22 bp):
GTGCTTGAAATAGACACACGAG
Found at i:15705510 original size:17 final size:18
Alignment explanation
Indices: 15705482--15705515 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15705472 AATTTCTATT
*
15705482 CAATTTATATCCTAATTC
1 CAATTTATATCCCAATTC
15705500 CAATTTA-ATCCCAATT
1 CAATTTATATCCCAATT
15705516 AACTCATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
CAATTTATATCCCAATTC
Found at i:15706011 original size:3 final size:3
Alignment explanation
Indices: 15706005--15706049 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
15705995 AAATATTATT
* * * *
15706005 TAA TAA TGA TAA TAA TTA TAA TAA TTA TAA TAA TAA TTA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15706050 ATATCTTTTA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:15713820 original size:53 final size:52
Alignment explanation
Indices: 15713740--15713847 Score: 207
Period size: 53 Copynumber: 2.1 Consensus size: 52
15713730 AAGAGCTTTG
15713740 CATCCCACCCATCGTATTTAGGAAAAACTTCAAAAAAATGTGAAAAAAAAAGA
1 CATCCCACCCATCGTATTTAGGAAAAACTTCAAAAAAATGTG-AAAAAAAAGA
15713793 CATCCCACCCATCGTATTTAGGAAAAACTTCAAAAAAATGTGAAAAAAAAGA
1 CATCCCACCCATCGTATTTAGGAAAAACTTCAAAAAAATGTGAAAAAAAAGA
15713845 CAT
1 CAT
15713848 ATTTTGTCAT
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 13 0.24
53 42 0.76
ACGTcount: A:0.50, C:0.19, G:0.11, T:0.19
Consensus pattern (52 bp):
CATCCCACCCATCGTATTTAGGAAAAACTTCAAAAAAATGTGAAAAAAAAGA
Found at i:15714051 original size:28 final size:30
Alignment explanation
Indices: 15714003--15714059 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 30
15713993 TTAAATAATT
*
15714003 CAAAATATTAAAAATATTTATAAA-AAAAC
1 CAAAATATTAAAAATAATTATAAATAAAAC
15714032 CAAAA-ATTAATAAA-AATTATAAATAAAA
1 CAAAATATTAA-AAATAATTATAAATAAAA
15714060 ATAAAGATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 13 0.52
29 12 0.48
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (30 bp):
CAAAATATTAAAAATAATTATAAATAAAAC
Found at i:15717032 original size:15 final size:15
Alignment explanation
Indices: 15717012--15717045 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15717002 AGAAATCACA
15717012 GAAAATAAATTTTGG
1 GAAAATAAATTTTGG
**
15717027 GAAAATACTTTTTGG
1 GAAAATAAATTTTGG
15717042 GAAA
1 GAAA
15717046 TTCGATTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.32
Consensus pattern (15 bp):
GAAAATAAATTTTGG
Found at i:15729506 original size:14 final size:15
Alignment explanation
Indices: 15729486--15729524 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
15729476 TTGTTTCACT
15729486 AAAAATAATTTTCAG
1 AAAAATAATTTTCAG
*
15729501 -AAAATAA-TTTCTG
1 AAAAATAATTTTCAG
15729514 AAAAATAATTT
1 AAAAATAATTT
15729525 ACATTTCTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 5 0.24
14 14 0.67
15 2 0.10
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (15 bp):
AAAAATAATTTTCAG
Found at i:15735378 original size:21 final size:21
Alignment explanation
Indices: 15735352--15735402 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
15735342 AGCGGTGGCG
*
15735352 GTGAGATTAGTTACTGTAGCA
1 GTGAGATTAGATACTGTAGCA
* *
15735373 GTGAGATTGGATACTGTAGCG
1 GTGAGATTAGATACTGTAGCA
15735394 GTGAGATTA
1 GTGAGATTA
15735403 AAAACAATGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.08, G:0.33, T:0.31
Consensus pattern (21 bp):
GTGAGATTAGATACTGTAGCA
Found at i:15738700 original size:31 final size:31
Alignment explanation
Indices: 15738665--15738725 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
15738655 AATAGACCAA
*
15738665 TGACTTAAATAAAAACTTTTAAATAGTTCAG
1 TGACTTAAATAAAAACTTTCAAATAGTTCAG
*
15738696 TGACTTAAATGAAAACTTTCAAATAGTTCA
1 TGACTTAAATAAAAACTTTCAAATAGTTCA
15738726 ATAACCAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.34
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTCAAATAGTTCAG
Found at i:15744406 original size:46 final size:46
Alignment explanation
Indices: 15744354--15744482 Score: 179
Period size: 46 Copynumber: 2.8 Consensus size: 46
15744344 AGTGTGCTCT
*
15744354 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
15744400 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
15744446 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATAC
15744483 TATGACATCA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
45 1 0.01
46 74 0.99
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:15747068 original size:11 final size:11
Alignment explanation
Indices: 15747034--15747073 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
15747024 TAATAACAAC
*
15747034 AAAATAGTAGC
1 AAAATAGTAGT
* *
15747045 AACATACTAGT
1 AAAATAGTAGT
15747056 AAAATAGTAGT
1 AAAATAGTAGT
15747067 AAAATAG
1 AAAATAG
15747074 GGAGAAAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.55, C:0.07, G:0.15, T:0.23
Consensus pattern (11 bp):
AAAATAGTAGT
Found at i:15748765 original size:20 final size:20
Alignment explanation
Indices: 15748740--15748780 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
15748730 CTCTTCCATG
15748740 ACTGTTTTTCAGCTGAAGAA
1 ACTGTTTTTCAGCTGAAGAA
*
15748760 ACTGTTTTTCAGCTGATGAA
1 ACTGTTTTTCAGCTGAAGAA
15748780 A
1 A
15748781 ATGAAGAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.37
Consensus pattern (20 bp):
ACTGTTTTTCAGCTGAAGAA
Found at i:15754010 original size:14 final size:15
Alignment explanation
Indices: 15753971--15754002 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15753961 TAAACATCAC
*
15753971 AAACATATTTACCAA
1 AAACATACTTACCAA
15753986 AAACATACTTACCAA
1 AAACATACTTACCAA
15754001 AA
1 AA
15754003 TATGCTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (15 bp):
AAACATACTTACCAA
Found at i:15755060 original size:56 final size:56
Alignment explanation
Indices: 15755000--15755135 Score: 227
Period size: 56 Copynumber: 2.4 Consensus size: 56
15754990 TCCCAGACAG
* * *
15755000 GGTCTTACTCGCACACATAAATCGGAATCACATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCAATGCCAACGTATTAAACAT
*
15755056 GGTCTTACTCGCAGACATATATCGGAATCACATATCAATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCAATGCCAACGTATTAAACAT
*
15755112 GGTCTTACTCGTACACATATATCG
1 GGTCTTACTCGCACACATATATCG
15755136 ATGCCATGGT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
56 74 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCAATGCCAACGTATTAAACAT
Found at i:15765327 original size:42 final size:42
Alignment explanation
Indices: 15765267--15765365 Score: 162
Period size: 42 Copynumber: 2.4 Consensus size: 42
15765257 TAGCTCTCAC
* *
15765267 GAGCTTCTATTTAACTCATATGAGTTTTCGTTCAGCTCTATT
1 GAGCTTCTGTTTAACTCATATGAGTTTTCCTTCAGCTCTATT
* *
15765309 GAGCTTCTGTTTATCTCATATGAGTTTTCCTTCAGCTCTTTT
1 GAGCTTCTGTTTAACTCATATGAGTTTTCCTTCAGCTCTATT
15765351 GAGCTTCTGTTTAAC
1 GAGCTTCTGTTTAAC
15765366 CCTTATGGGT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (42 bp):
GAGCTTCTGTTTAACTCATATGAGTTTTCCTTCAGCTCTATT
Found at i:15765381 original size:21 final size:21
Alignment explanation
Indices: 15765355--15765424 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
15765345 TCTTTTGAGC
*
15765355 TTCTGTTTAACCCTTATGGGT
1 TTCTGTTCAACCCTTATGGGT
* * * *
15765376 TTCTGTTCAACTCTTACGAGC
1 TTCTGTTCAACCCTTATGGGT
*
15765397 TTCTGTTCAACCTTTATGGGT
1 TTCTGTTCAACCCTTATGGGT
15765418 TTCTGTT
1 TTCTGTT
15765425 TAGCTCTCAT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.14, C:0.21, G:0.17, T:0.47
Consensus pattern (21 bp):
TTCTGTTCAACCCTTATGGGT
Found at i:15765390 original size:42 final size:42
Alignment explanation
Indices: 15765267--15765408 Score: 160
Period size: 42 Copynumber: 3.4 Consensus size: 42
15765257 TAGCTCTCAC
* * *
15765267 GAGCTTCTATTTAACTCATATGAGTTTTCGTTCAGCTCTATT
1 GAGCTTCTGTTTAACCCATATGAGTTTTCGTTCAGCTCTTTT
* * *
15765309 GAGCTTCTGTTTATCTCATATGAGTTTTCCTTCAGCTCTTTT
1 GAGCTTCTGTTTAACCCATATGAGTTTTCGTTCAGCTCTTTT
* * * **
15765351 GAGCTTCTGTTTAACCCTTATG-GGTTTCTGTTCAACTCTTAC
1 GAGCTTCTGTTTAACCCATATGAGTTTTC-GTTCAGCTCTTTT
*
15765393 GAGCTTCTGTTCAACC
1 GAGCTTCTGTTTAACC
15765409 TTTATGGGTT
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
41 5 0.06
42 81 0.94
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.44
Consensus pattern (42 bp):
GAGCTTCTGTTTAACCCATATGAGTTTTCGTTCAGCTCTTTT
Found at i:15765414 original size:42 final size:42
Alignment explanation
Indices: 15765351--15765452 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 42
15765341 CAGCTCTTTT
* * *
15765351 GAGCTTCTGTTTAACCCTTATGGGTTTCTGTTCAACTCTTAC
1 GAGCTTCTGTTCAACCTTTATGGGTTTCTGTTCAACTCTCAC
* * *
15765393 GAGCTTCTGTTCAACCTTTATGGGTTTCTGTTTAGCTCTCAT
1 GAGCTTCTGTTCAACCTTTATGGGTTTCTGTTCAACTCTCAC
* *
15765435 GAGCTTTTGTTCAGCCTT
1 GAGCTTCTGTTCAACCTT
15765453 CGGGCTTTCG
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.15, C:0.23, G:0.19, T:0.44
Consensus pattern (42 bp):
GAGCTTCTGTTCAACCTTTATGGGTTTCTGTTCAACTCTCAC
Found at i:15767337 original size:20 final size:20
Alignment explanation
Indices: 15767312--15767380 Score: 79
Period size: 20 Copynumber: 3.4 Consensus size: 20
15767302 CAAGGTTAAC
15767312 CAAACTAATTTGCATTATTT
1 CAAACTAATTTGCATTATTT
* *
15767332 CAAACTAA-GT-CACTTATTAAC
1 CAAACTAATTTGCA-TTATT--T
15767353 CAAACTAATTTGCATTATTT
1 CAAACTAATTTGCATTATTT
15767373 CAAACTAA
1 CAAACTAA
15767381 GTTACTTACC
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
18 2 0.05
19 6 0.15
20 16 0.40
21 8 0.20
22 6 0.15
23 2 0.05
ACGTcount: A:0.41, C:0.19, G:0.04, T:0.36
Consensus pattern (20 bp):
CAAACTAATTTGCATTATTT
Found at i:15767364 original size:41 final size:41
Alignment explanation
Indices: 15767307--15767388 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
15767297 GTACCCAAGG
15767307 TTAACCAAACTAATTTGCATTATTTCAAACTAAGTCACTTA
1 TTAACCAAACTAATTTGCATTATTTCAAACTAAGTCACTTA
*
15767348 TTAACCAAACTAATTTGCATTATTTCAAACTAAGTTACTTA
1 TTAACCAAACTAATTTGCATTATTTCAAACTAAGTCACTTA
15767389 CCTATCAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.38
Consensus pattern (41 bp):
TTAACCAAACTAATTTGCATTATTTCAAACTAAGTCACTTA
Found at i:15768642 original size:21 final size:22
Alignment explanation
Indices: 15768612--15768688 Score: 133
Period size: 21 Copynumber: 3.6 Consensus size: 22
15768602 AGCTTGAAAG
15768612 TTGAACAGAAGCTCGTAAGAGC
1 TTGAACAGAAGCTCGTAAGAGC
15768634 TTG-ACAGAAGCTCGTAAGAGC
1 TTGAACAGAAGCTCGTAAGAGC
15768655 -TGAACAGAAGCTCGTAAGAG-
1 TTGAACAGAAGCTCGTAAGAGC
15768675 TTGAACAGAAGCTC
1 TTGAACAGAAGCTC
15768689 AAAAAACTAA
Statistics
Matches: 53, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
20 2 0.04
21 48 0.91
22 3 0.06
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.18
Consensus pattern (22 bp):
TTGAACAGAAGCTCGTAAGAGC
Found at i:15770284 original size:18 final size:18
Alignment explanation
Indices: 15770261--15770298 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
15770251 AATATATATT
15770261 AACCCAAGTACCCAAACC
1 AACCCAAGTACCCAAACC
* *
15770279 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAAACC
15770297 AA
1 AA
15770299 TCATAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.45, C:0.45, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAAACC
Found at i:15770365 original size:20 final size:20
Alignment explanation
Indices: 15770327--15770365 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15770317 ATTTAATAAA
**
15770327 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
*
15770347 TAAAACTAAAAATAAAAAA
1 TAAAAATAAAAATAAAAAA
15770366 ATATAATTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:15770397 original size:9 final size:9
Alignment explanation
Indices: 15770383--15770432 Score: 66
Period size: 9 Copynumber: 5.6 Consensus size: 9
15770373 TTTATACAAA
15770383 TAATTCGGT
1 TAATTCGGT
*
15770392 TAATTC-TT
1 TAATTCGGT
*
15770400 GTAATTCGGG
1 -TAATTCGGT
15770410 TAATTCGGT
1 TAATTCGGT
15770419 TAATTCGGT
1 TAATTCGGT
15770428 TAATT
1 TAATT
15770433 TTATACTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
8 1 0.03
9 34 0.97
ACGTcount: A:0.24, C:0.10, G:0.20, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:15771384 original size:39 final size:41
Alignment explanation
Indices: 15771305--15771394 Score: 130
Period size: 39 Copynumber: 2.2 Consensus size: 41
15771295 TTAAAAATAT
* * *
15771305 TTATATTAAAAAACACTATTATGAATATAATAAATATTTTA
1 TTATATTAAAAAACACTATAATAAACATAATAAATATTTTA
15771346 TTATATTAAAAAACA-TA-AATAAACATAATAAATATTTTA
1 TTATATTAAAAAACACTATAATAAACATAATAAATATTTTA
*
15771385 TTGTATTAAA
1 TTATATTAAA
15771395 TATAATTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 28 0.62
40 2 0.04
41 15 0.33
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (41 bp):
TTATATTAAAAAACACTATAATAAACATAATAAATATTTTA
Found at i:15771562 original size:31 final size:29
Alignment explanation
Indices: 15771497--15771562 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 29
15771487 GTTATTAATT
15771497 TAATATAAATATATAATTATTATTTAACA
1 TAATATAAATATATAATTATTATTTAACA
* *
15771526 T-ATATAATTAATATAA-TATTTTTTATAACA
1 TAATATAAAT-ATATAATTA-TTATT-TAACA
15771556 TAATATA
1 TAATATA
15771563 TATTCGAGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
28 9 0.29
29 11 0.35
30 6 0.19
31 5 0.16
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (29 bp):
TAATATAAATATATAATTATTATTTAACA
Found at i:15787098 original size:23 final size:23
Alignment explanation
Indices: 15787071--15787122 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
15787061 AGTAATATAC
*
15787071 AAAATAATATACATTAA-TTTAA
1 AAAATAATATACATAAATTTTAA
15787093 ATAAATAATATACATAAATTTTAA
1 A-AAATAATATACATAAATTTTAA
15787117 AAAATA
1 AAAATA
15787123 GTGTAATGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 1 0.04
23 20 0.74
24 6 0.22
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (23 bp):
AAAATAATATACATAAATTTTAA
Found at i:15792445 original size:17 final size:17
Alignment explanation
Indices: 15792423--15792470 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
15792413 TGTTTGTAAG
15792423 TATAAATACAAAATAAT
1 TATAAATACAAAATAAT
*
15792440 TATAAATACAATATAAT
1 TATAAATACAAAATAAT
* *
15792457 TATGAATATAAAAT
1 TATAAATACAAAAT
15792471 TAAATTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (17 bp):
TATAAATACAAAATAAT
Found at i:15793590 original size:3 final size:3
Alignment explanation
Indices: 15793582--15793611 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
15793572 ATGCAATAAG
15793582 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
15793612 TTTTGCACTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:15793783 original size:15 final size:15
Alignment explanation
Indices: 15793763--15793792 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15793753 CATGTGGCAA
15793763 AAAAATAATAAAAAT
1 AAAAATAATAAAAAT
*
15793778 AAAAATTATAAAAAT
1 AAAAATAATAAAAAT
15793793 TATTAAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAAATAATAAAAAT
Found at i:15793791 original size:10 final size:9
Alignment explanation
Indices: 15793776--15793884 Score: 71
Period size: 10 Copynumber: 11.7 Consensus size: 9
15793766 AATAATAAAA
15793776 ATAAAAATT
1 ATAAAAATT
15793785 ATAAAAATT
1 ATAAAAATT
*
15793794 AT-TAAATT
1 ATAAAAATT
*
15793802 ATAATAAAAAT
1 AT-A-AAAATT
15793813 ATAAAAA-T
1 ATAAAAATT
* *
15793821 ACTTAAATTT
1 A-TAAAAATT
15793831 ATTAAAAATT
1 A-TAAAAATT
*
15793841 AGAAAAAATT
1 A-TAAAAATT
15793851 AT-AAAATAT
1 ATAAAAAT-T
*
15793860 ATAGAAATAT
1 ATAAAAAT-T
*
15793870 AGAAAAATT
1 ATAAAAATT
15793879 ATAAAA
1 ATAAAA
15793885 TTTTAATAAA
Statistics
Matches: 78, Mismatches: 15, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
8 14 0.18
9 28 0.36
10 30 0.38
11 6 0.08
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:15793816 original size:28 final size:29
Alignment explanation
Indices: 15793775--15793894 Score: 115
Period size: 28 Copynumber: 4.2 Consensus size: 29
15793765 AAATAATAAA
15793775 AATAAAAATTATAAAAATTATTAAATTAT
1 AATAAAAATTATAAAAATTATTAAATTAT
15793804 AATAAAAA-TATAAAAA-TACTTAAATT-T
1 AATAAAAATTATAAAAATTA-TTAAATTAT
* * *
15793831 ATTAAAAATTAGAAAAAATTA-TAAAATAT
1 AATAAAAATTA-TAAAAATTATTAAATTAT
* * * *
15793860 -ATAGAAATATAGAAAAATTATAAAATTTT
1 AATAAAAAT-TATAAAAATTATTAAATTAT
15793889 AATAAA
1 AATAAA
15793895 CCTAAATATA
Statistics
Matches: 73, Mismatches: 10, Indels: 15
0.74 0.10 0.15
Matches are distributed among these distances:
27 10 0.14
28 36 0.49
29 21 0.29
30 6 0.08
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (29 bp):
AATAAAAATTATAAAAATTATTAAATTAT
Found at i:15793833 original size:37 final size:35
Alignment explanation
Indices: 15793767--15793836 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 35
15793757 TGGCAAAAAA
*
15793767 ATAATAAAAATAAAAATTATAAAAATTATTAAATT
1 ATAATAAAAATAAAAAATATAAAAATTATTAAATT
* *
15793802 ATAATAAAAATATAAAAATACTTAAATTTATTAAA
1 ATAATAAAAATA-AAAAATA-TAAAAATTATTAAA
15793837 AATTAGAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
35 12 0.40
36 6 0.20
37 12 0.40
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (35 bp):
ATAATAAAAATAAAAAATATAAAAATTATTAAATT
Found at i:15795832 original size:5 final size:5
Alignment explanation
Indices: 15795822--15795849 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
15795812 ATGTAAACTC
15795822 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
15795850 GGTGAAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:15796552 original size:51 final size:51
Alignment explanation
Indices: 15796489--15796591 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
15796479 AATAGAATCA
15796489 TTTCGACTCTTCTATAGAAACCAAGTCATGATAAAGAAGAAAATGGGACAT
1 TTTCGACTCTTCTATAGAAACCAAGTCATGATAAAGAAGAAAATGGGACAT
15796540 TTTCGACTCTTCTATAGAAACCAAGTCATGATAAAGAAGAAAATGGGACAT
1 TTTCGACTCTTCTATAGAAACCAAGTCATGATAAAGAAGAAAATGGGACAT
15796591 T
1 T
15796592 CACCATATTA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.26
Consensus pattern (51 bp):
TTTCGACTCTTCTATAGAAACCAAGTCATGATAAAGAAGAAAATGGGACAT
Found at i:15797880 original size:12 final size:12
Alignment explanation
Indices: 15797863--15797899 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
15797853 TGAAAAAAGG
15797863 AATAAATTGTAA
1 AATAAATTGTAA
15797875 AATAAATTGTAA
1 AATAAATTGTAA
15797887 AATAAATTGTAA
1 AATAAATTGTAA
15797899 A
1 A
15797900 TTTTGAGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
AATAAATTGTAA
Found at i:15798439 original size:16 final size:16
Alignment explanation
Indices: 15798414--15798447 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15798404 ATGAATATAT
* *
15798414 ATGTGTAAATGTGATA
1 ATGTGCAAATATGATA
15798430 ATGTGCAAATATGATA
1 ATGTGCAAATATGATA
15798446 AT
1 AT
15798448 TGGATATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATGTGCAAATATGATA
Found at i:15814489 original size:20 final size:19
Alignment explanation
Indices: 15814444--15814494 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 19
15814434 GACATTTTTC
15814444 TGTTAGAAAAA-AAAATAA
1 TGTTAGAAAAATAAAATAA
** *
15814462 AATAAGAAAAATGAAAATAA
1 TGTTAGAAAAAT-AAAATAA
15814482 TGTTAGAAAAATA
1 TGTTAGAAAAATA
15814495 TGAATGCCTT
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
18 8 0.32
19 1 0.04
20 16 0.64
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.22
Consensus pattern (19 bp):
TGTTAGAAAAATAAAATAA
Found at i:15828343 original size:14 final size:14
Alignment explanation
Indices: 15828324--15828362 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
15828314 TTGTTTTATT
15828324 GAAAATGACTTTC-G
1 GAAAATGA-TTTCTG
15828338 GAAAATGATTTCTG
1 GAAAATGATTTCTG
*
15828352 CAAAATGATTT
1 GAAAATGATTT
15828363 ACTTTTTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 4 0.17
14 19 0.83
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.33
Consensus pattern (14 bp):
GAAAATGATTTCTG
Found at i:15828500 original size:15 final size:15
Alignment explanation
Indices: 15828480--15828509 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
15828470 AATTAAACAA
15828480 ACATGTAAAAGGTTT
1 ACATGTAAAAGGTTT
15828495 ACATGTAAAAGGTTT
1 ACATGTAAAAGGTTT
15828510 TACGGAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (15 bp):
ACATGTAAAAGGTTT
Found at i:15828715 original size:26 final size:26
Alignment explanation
Indices: 15828661--15828717 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
15828651 ATTTTATTTT
*
15828661 TATTTTTAAAAATATTTAAAATATTA
1 TATTTTTAAAAATATTTAAAATATGA
*
15828687 TATTTTTAAATAT-TATTAAACATA-GA
1 TATTTTTAAAAATAT-TTAAA-ATATGA
15828713 TATTT
1 TATTT
15828718 AATTATTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 1 0.04
26 23 0.85
27 3 0.11
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (26 bp):
TATTTTTAAAAATATTTAAAATATGA
Found at i:15828822 original size:14 final size:15
Alignment explanation
Indices: 15828805--15828844 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
15828795 TTCAATTTTA
15828805 TTTTAATAATA-AAT
1 TTTTAATAATATAAT
*
15828819 TTTTAA-AAAATAAT
1 TTTTAATAATATAAT
15828833 TTTTAATAATAT
1 TTTTAATAATAT
15828845 TATTCACATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 3 0.14
14 15 0.68
15 4 0.18
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTTTAATAATATAAT
Found at i:15828896 original size:15 final size:15
Alignment explanation
Indices: 15828876--15828932 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
15828866 ATTCAATATT
15828876 AATATTTTAATAATA
1 AATATTTTAATAATA
*
15828891 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
15828910 AATATATTAATAATA
1 AATATTTTAATAATA
*
15828925 AATGTTTT
1 AATATTTT
15828933 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:15833634 original size:40 final size:40
Alignment explanation
Indices: 15833533--15833678 Score: 188
Period size: 40 Copynumber: 3.6 Consensus size: 40
15833523 TCAAATTTTC
*
15833533 GCACACTAAGTGCCAATACATAGCCGAAGCTATTT-TAATCT
1 GCACACTAAGTGCC-ATACATAGCCGAAGCTATTTCGAAT-T
* *
15833574 -CACATACTAAGTACCATACATAGCAGAAGCTATTTCGAATT
1 GCAC--ACTAAGTGCCATACATAGCCGAAGCTATTTCGAATT
* * *
15833615 GCACACTAAGTGCCATACATTGCCGAAGCTATCTCGAATC
1 GCACACTAAGTGCCATACATAGCCGAAGCTATTTCGAATT
15833655 GCACACTAAGTGCCATACATAGCC
1 GCACACTAAGTGCCATACATAGCC
15833679 AAATTGTCGT
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
40 57 0.62
41 20 0.22
42 15 0.16
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (40 bp):
GCACACTAAGTGCCATACATAGCCGAAGCTATTTCGAATT
Found at i:15841048 original size:129 final size:132
Alignment explanation
Indices: 15840811--15841092 Score: 299
Period size: 129 Copynumber: 2.2 Consensus size: 132
15840801 ACGGGAGATT
* * *
15840811 GCAACCCAGCACGATAGGGCACTATTCCCCGAACTGCCAAACATCGAACACTTCTTTCGTTTTAA
1 GCAACCCAGCACGATAGGGCACAATTCCCCAAACTGCCAAACATCGAACACTCCTTTCGTTTTAA
** * * * *
15840876 AGGGTTTTTAGAAAATGTGAATGAAACTTCGAAGGGATCTTCGATTGTTTAGGGCGAATGAAAAA
66 AGGGTTTTTAGAAAACATGAATGAAACCTCAAAGGAATATTCGATTGTTTAGGGCGAATGAAAAA
15840941 AC
131 AC
* *
15840943 GCAACCCAGCACGATATGGCACAATT-CTCAAA-TCGCCAAACATCGAACA-TCCTTT-GTTTTG
1 GCAACCCAGCACGATAGGGCACAATTCCCCAAACT-GCCAAACATCGAACACTCCTTTCGTTTT-
* * * ** *
15841004 AAA-GGTTTTTA-ATAAACATGAGTGAAAACCT-AAAGGAATATTCGATTGTTTTGAGTAAACGA
64 AAAGGGTTTTTAGA-AAACATGAATG-AAACCTCAAAGGAATATTCGATTGTTTAGGGCGAATGA
* *
15841066 GAAATC
127 AAAAAC
*
15841072 ACAACCCAGCACGATAGGGCA
1 GCAACCCAGCACGATAGGGCA
15841093 TGATTCCCGA
Statistics
Matches: 125, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
128 1 0.01
129 67 0.54
130 14 0.11
131 19 0.15
132 24 0.19
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.25
Consensus pattern (132 bp):
GCAACCCAGCACGATAGGGCACAATTCCCCAAACTGCCAAACATCGAACACTCCTTTCGTTTTAA
AGGGTTTTTAGAAAACATGAATGAAACCTCAAAGGAATATTCGATTGTTTAGGGCGAATGAAAAA
AC
Found at i:15841398 original size:132 final size:131
Alignment explanation
Indices: 15841009--15841410 Score: 411
Period size: 132 Copynumber: 3.1 Consensus size: 131
15840999 TTTTGAAAGG
*** * * * * * **
15841009 TTTTTAATAA-ACATGAGTGAAAACCTAAAGGAATATTCGATTGTTTTGAGTAAACGAGAAATCA
1 TTTTTAA-AAGACATGAGTGAAATTTTGAAGGGATATTCGATTATTTTAAGCAAACGAGAAATTG
* * * * * *
15841073 CAACCCAGCACGATAGGGCATGATTCC-CGAATTGTC-AATCA-CCGAATATTGCCTTCGTTTTA
65 CAACCCAACACGTTAAGGCACGATTCCACGAATTGCCAAAT-ATCC-AA-ATCGCCTTCGTTTTA
15841135 AATG-A
127 AA-GAA
* * * *
15841140 TTTTTAGAAGACATGCGTGAAATTTTGGAGGGATATTTGATTATTTTAAGCAAACGAGAAATTGC
1 TTTTTAAAAGACATGAGTGAAATTTTGAAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGC
* * * *
15841205 AACCCAACACGTTAGGGCACGATTCCACGAATTGCCAAATATCGCACATCGCCTCCATTTTAAAG
66 AACCCAACACGTTAAGGCACGATTCCACGAATTGCCAAATATC-CAAATCGCCTTCGTTTTAAAG
15841270 AA
130 AA
* * *
15841272 TTTTTAAAAGGCATGAGTGAAATTTTGAAGGGATATTCGATTATTTTCAGCAAACGCGAAATTGC
1 TTTTTAAAAGACATGAGTGAAATTTTGAAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGC
* * * *
15841337 AACCCAATACGTTAAGGCACTATTCCGCGAATTGCCAAATAT-CAAATCTAGTCTTCGTTTTAAA
66 AACCCAACACGTTAAGGCACGATTCCACGAATTGCCAAATATCCAAATC--GCCTTCGTTTTAAA
15841401 GAA
129 GAA
15841404 TTTTTAA
1 TTTTTAA
15841411 GTGAATACTT
Statistics
Matches: 226, Mismatches: 37, Indels: 15
0.81 0.13 0.05
Matches are distributed among these distances:
130 7 0.03
131 72 0.32
132 141 0.62
133 5 0.02
134 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (131 bp):
TTTTTAAAAGACATGAGTGAAATTTTGAAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGC
AACCCAACACGTTAAGGCACGATTCCACGAATTGCCAAATATCCAAATCGCCTTCGTTTTAAAGA
A
Found at i:15844868 original size:132 final size:132
Alignment explanation
Indices: 15844519--15845322 Score: 1170
Period size: 132 Copynumber: 6.1 Consensus size: 132
15844509 TCTACTGGAT
** * * * *
15844519 ACGAGATCTGCAATCTTCAGCCTACTCCACTACAATTTTTAGGGAGCCA-GGTCGGTGGCGT-AA
1 ACGAGATCTAAAAT-TTCAACCTACTCCACTACAA-CTTTAGGGAGCTAGGGT-GATGGC-TCAA
* * * *
15844582 ACCTGCTTCACTGC-AACATCAGGAAGCCTAGATTTACCGTCTTTGATCTGTTCCACTGCAA-TC
62 ATCTGCTTCACTGCAAAC-TCAGGAAGCCTAGATTCACCGTCTTCGATCTGCTCCACTGCAACT-
15844645 TCAGGGAA
125 TCAGGGAA
* * * * *
15844653 ACAAGATCTACAATCTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATC
1 ACGAGATCTAAAAT-TTCAACCTACTCCACTACAACTTTAGGGAGCTAGGGTGATGGCTCAAATC
* * * *
15844718 TGCCTCACTGCAATCTCAGGAAGCCTAGATTCACCGTCTTCGATCTGCTCCACTGTAACTTTAGG
65 TGCTTCACTGCAAACTCAGGAAGCCTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGG
15844783 GAA
130 GAA
* * *
15844786 ATGAGATCTAAAATTTCAACTTACTCCACTACCACTTTAGGGAGCTAGGGTGATGGCTCAAATCT
1 ACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGGTGATGGCTCAAATCT
15844851 GCTTCACTGCAAACTCAGGAAGCCTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
66 GCTTCACTGCAAACTCAGGAAGCCTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
15844916 AA
131 AA
*
15844918 ACGAGATCTAAAATTTCAACCTACTCCACTACAATTTTAGGGAGCTAGGGTGATGGCTCAAATCT
1 ACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGGTGATGGCTCAAATCT
15844983 GCTTCACTGCAAACTCAGGAAGCCTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
66 GCTTCACTGCAAACTCAGGAAGCCTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
15845048 AA
131 AA
*
15845050 ACGAGATCTAAAATTTCAACCTACTCCACTACAATTTTAGGGAGCTAGGGTGATGGCTCAAATCT
1 ACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGGTGATGGCTCAAATCT
*
15845115 GCTTCACTGCAAACTCAGGAAGCCTAGATTCACCGTCTTCGATCTGCTCCACTGTAACTTCAGGG
66 GCTTCACTGCAAACTCAGGAAGCCTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
15845180 AA
131 AA
* * * **
15845182 ACGAGATCTAAAATTTCCACCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTCCCATCT
1 ACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGGTGATGGCTCAAATCT
* * * *
15845247 GCTTTACTGC-AACTTCAGGAAG-TTAAGATTCACCGTCTTCGATTTGCTTCACTGCAACTTCAG
66 GCTTCACTGCAAAC-TCAGGAAGCCT-AGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAG
15845310 GGAA
129 GGAA
*
15845314 ACAAGATCT
1 ACGAGATCT
15845323 GTAGGATTCA
Statistics
Matches: 621, Mismatches: 43, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
131 4 0.01
132 492 0.79
133 88 0.14
134 37 0.06
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (132 bp):
ACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGGTGATGGCTCAAATCT
GCTTCACTGCAAACTCAGGAAGCCTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
AA
Found at i:15844914 original size:45 final size:45
Alignment explanation
Indices: 15844846--15845178 Score: 129
Period size: 44 Copynumber: 7.5 Consensus size: 45
15844836 TGATGGCTCA
*
15844846 AATCTGCTTCACTGCAAAC-TCAGGAAGCCTAGATTCACCGTCTTC
1 AATCTGCTCCACTGC-AACTTCAGGAAGCCTAGATTCACCGTCTTC
* * * ***
15844891 GATCTGCTCCACTGCAACTTCAGGGAA-ACGAGA-TCTAAAAT-TTC
1 AATCTGCTCCACTGCAACTTCA-GGAAGCCTAGATTC-ACCGTCTTC
* * * * * * ** * * *
15844935 AACCTACTCCACTACAATTTTAGGGAG-CTAGGGTGA-TGGC-TC
1 AATCTGCTCCACTGCAACTTCAGGAAGCCTAGATTCACCGTCTTC
*
15844977 AAATCTGCTTCACTGCAAAC-TCAGGAAGCCTAGATTCACCGTCTTC
1 -AATCTGCTCCACTGC-AACTTCAGGAAGCCTAGATTCACCGTCTTC
* * * ***
15845023 GATCTGCTCCACTGCAACTTCAGGGAA-ACGAGA-TCTAAAAT-TTC
1 AATCTGCTCCACTGCAACTTCA-GGAAGCCTAGATTC-ACCGTCTTC
* * * * * * ** * * *
15845067 AACCTACTCCACTACAATTTTAGGGAG-CTAGGGTGA-TGGC-TC
1 AATCTGCTCCACTGCAACTTCAGGAAGCCTAGATTCACCGTCTTC
*
15845109 AAATCTGCTTCACTGCAAAC-TCAGGAAGCCTAGATTCACCGTCTTC
1 -AATCTGCTCCACTGC-AACTTCAGGAAGCCTAGATTCACCGTCTTC
* *
15845155 GATCTGCTCCACTGTAACTTCAGG
1 AATCTGCTCCACTGCAACTTCAGG
15845179 GAAACGAGAT
Statistics
Matches: 198, Mismatches: 67, Indels: 46
0.64 0.22 0.15
Matches are distributed among these distances:
42 4 0.02
43 48 0.24
44 69 0.35
45 65 0.33
46 12 0.06
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGAAGCCTAGATTCACCGTCTTC
Found at i:15857248 original size:132 final size:132
Alignment explanation
Indices: 15856977--15857483 Score: 608
Period size: 132 Copynumber: 3.8 Consensus size: 132
15856967 TGAAAACCTA
* * * ** * * *
15856977 AAGGAATATTCGATTGTTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCC-
1 AAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
* * * * * * * *
15857041 CGAATTGTC-AATCACCGAATATTGCCTTCGTTTTAAATG-ATTTTTAGAAGACATGCGTGAAAT
66 CGAATTGCCAAAT-ATCGAATCTCGACTTCGTTTTAAA-GAATTTTTAAAAGGCATGAGTGAAAT
15857104 TTTG
129 TTTG
* * * * *
15857108 GAGGGATATTTGATTATTTTAAGCAAACGAGAAATTGCAACCCAGCCCGTTAGGGCACGATTCCA
1 AAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
* * * * *
15857173 TGAATTGCCAAATATCGCA-CATCGCCTCCATTTTAAAGAATTTTTAAAAGGCATGAGTGAAATT
66 CGAATTGCCAAATATCGAATC-TCGACTTCGTTTTAAAGAATTTTTAAAAGGCATGAGTGAAATT
15857237 TTG
130 TTG
* * * **
15857240 AAGGGATATTCGATTATTTTAAGCAAATGCGAAATTGTAACCCAACACGTTAGGGCACTCTTCCG
1 AAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
* * *
15857305 CGACTTGCCACATGTCGAATCTCGACTTCGTTTTAAAGAATTTTTAAAAGGCATGAGTGAAATTT
66 CGAATTGCCAAATATCGAATCTCGACTTCGTTTTAAAGAATTTTTAAAAGGCATGAGTGAAATTT
15857370 TG
131 TG
* * * *
15857372 AAGGGATATTCGATTATTTTAAGCAAATGCGAAATTGTAACCCAACACGTTAGGGCACTATTCCG
1 AAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
*
15857437 CGAATTGCCAAATGTCGAATCTCGACTTCGTTTTAAAGAATTTTTAA
66 CGAATTGCCAAATATCGAATCTCGACTTCGTTTTAAAGAATTTTTAA
15857484 GTGAATACTT
Statistics
Matches: 329, Mismatches: 42, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
131 55 0.17
132 270 0.82
133 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (132 bp):
AAGGGATATTCGATTATTTTAAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
CGAATTGCCAAATATCGAATCTCGACTTCGTTTTAAAGAATTTTTAAAAGGCATGAGTGAAATTT
TG
Found at i:15868348 original size:18 final size:18
Alignment explanation
Indices: 15868325--15868359 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15868315 ATTTTTTTGA
15868325 ATTTTTATGAATATTTAC
1 ATTTTTATGAATATTTAC
* *
15868343 ATTTTTTTGAATTTTTA
1 ATTTTTATGAATATTTA
15868360 TAATTTTTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.63
Consensus pattern (18 bp):
ATTTTTATGAATATTTAC
Found at i:15868366 original size:18 final size:18
Alignment explanation
Indices: 15868314--15868372 Score: 57
Period size: 17 Copynumber: 3.2 Consensus size: 18
15868304 ACTCCATGCT
*
15868314 AATTTTTTTGAATTTTTATG
1 AATTTTTAT-AATTTTT-TG
* * *
15868334 AATATTTACATTTTTTTG
1 AATTTTTATAATTTTTTG
15868352 AATTTTTATAA-TTTTTG
1 AATTTTTATAATTTTTTG
15868369 AATT
1 AATT
15868373 ATTTGTTAGT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
17 10 0.31
18 10 0.31
19 6 0.19
20 6 0.19
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.63
Consensus pattern (18 bp):
AATTTTTATAATTTTTTG
Found at i:15870169 original size:17 final size:18
Alignment explanation
Indices: 15870139--15870172 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15870129 ATGTATTATT
*
15870139 TTTTTTGTTGAAATAATG
1 TTTTTTGATGAAATAATG
15870157 TTTTTTGAT-AAATAAT
1 TTTTTTGATGAAATAAT
15870173 ACTAAATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (18 bp):
TTTTTTGATGAAATAATG
Found at i:15870207 original size:12 final size:12
Alignment explanation
Indices: 15870190--15870214 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15870180 TTATATAAGA
15870190 TAATTTATTTTT
1 TAATTTATTTTT
15870202 TAATTTATTTTT
1 TAATTTATTTTT
15870214 T
1 T
15870215 TTGAAAAGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TAATTTATTTTT
Found at i:15875192 original size:21 final size:22
Alignment explanation
Indices: 15875168--15875209 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
15875158 AAAAATAAAT
*
15875168 ATAAATAATATAA-TTAAGAAC
1 ATAAATAACATAATTTAAGAAC
15875189 ATAAATAACATAATTTAAGAA
1 ATAAATAACATAATTTAAGAA
15875210 AAGAAATATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATAAATAACATAATTTAAGAAC
Found at i:15875216 original size:22 final size:21
Alignment explanation
Indices: 15875170--15875217 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
15875160 AAATAAATAT
* * *
15875170 AAATAATATAATTAAGAACAT
1 AAATAACATAATTAAGAAAAG
15875191 AAATAACATAATTTAAGAAAAG
1 AAATAACATAA-TTAAGAAAAG
15875213 AAATA
1 AAATA
15875218 TCACAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.25
Consensus pattern (21 bp):
AAATAACATAATTAAGAAAAG
Found at i:15875231 original size:4 final size:4
Alignment explanation
Indices: 15875222--15875247 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
15875212 GAAATATCAC
15875222 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
15875248 TGCACTTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:15878938 original size:65 final size:65
Alignment explanation
Indices: 15878855--15879042 Score: 358
Period size: 65 Copynumber: 2.9 Consensus size: 65
15878845 CATGCCCGTT
15878855 TGCTAGGCCGTGTGCCAATTAGGGGGTATACTGACTTGTACCACACGGCCAATCACACACCTGTA
1 TGCTAGGCCGTGTGCCAATTAGGGGGTATACTGACTTGTACCACACGGCCAATCACACACCTGTA
15878920 TGCTAGGCCGTGTGCCAATTAGGGGGTATACTGACTTGTACCACACGGCCAATCACACACCTGTA
1 TGCTAGGCCGTGTGCCAATTAGGGGGTATACTGACTTGTACCACACGGCCAATCACACACCTGTA
* *
15878985 TGCTAGGCCGTGTGCCAATTAGGGGGTATATTGACTTGTACCACACGGCCAGTCACAC
1 TGCTAGGCCGTGTGCCAATTAGGGGGTATACTGACTTGTACCACACGGCCAATCACAC
15879043 GCCCATGTGT
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 121 1.00
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (65 bp):
TGCTAGGCCGTGTGCCAATTAGGGGGTATACTGACTTGTACCACACGGCCAATCACACACCTGTA
Found at i:15880044 original size:28 final size:28
Alignment explanation
Indices: 15880003--15880061 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
15879993 ATACCGTTGA
*
15880003 ATACTCAATGTCTCGCACACTAAGTGCC
1 ATACTCAATATCTCGCACACTAAGTGCC
*
15880031 ATACTCGATATCTCGCACACTAAGTGCC
1 ATACTCAATATCTCGCACACTAAGTGCC
15880059 ATA
1 ATA
15880062 TATAGCCGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.25
Consensus pattern (28 bp):
ATACTCAATATCTCGCACACTAAGTGCC
Found at i:15885715 original size:4 final size:4
Alignment explanation
Indices: 15885706--15885730 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
15885696 TATCAAGTAA
15885706 ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT A
15885731 TATATATAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:15895802 original size:13 final size:13
Alignment explanation
Indices: 15895784--15895845 Score: 99
Period size: 13 Copynumber: 4.8 Consensus size: 13
15895774 TAGTATTTAT
15895784 AGACTTAGCTAAC
1 AGACTTAGCTAAC
15895797 AGACTTAGCTAAC
1 AGACTTAGCTAAC
*
15895810 AAACTTAGCTAAC
1 AGACTTAGCTAAC
*
15895823 AAACTT-GCTAAC
1 AGACTTAGCTAAC
15895835 AGACTTAGCTA
1 AGACTTAGCTA
15895846 CTCATAACAG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
12 11 0.24
13 35 0.76
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.24
Consensus pattern (13 bp):
AGACTTAGCTAAC
Found at i:15895822 original size:26 final size:25
Alignment explanation
Indices: 15895786--15895845 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
15895776 GTATTTATAG
*
15895786 ACTTAGCTAACAGACTTAGCTAACAA
1 ACTTAGCTAACAAACTT-GCTAACAA
*
15895812 ACTTAGCTAACAAACTTGCTAACAG
1 ACTTAGCTAACAAACTTGCTAACAA
15895837 ACTTAGCTA
1 ACTTAGCTA
15895846 CTCATAACAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 16 0.50
26 16 0.50
ACGTcount: A:0.40, C:0.23, G:0.12, T:0.25
Consensus pattern (25 bp):
ACTTAGCTAACAAACTTGCTAACAA
Found at i:15900314 original size:13 final size:13
Alignment explanation
Indices: 15900298--15900346 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
15900288 TAGTATTTAT
*
15900298 AGACTTAGCTAAT
1 AGACTTAGCTAAC
*
15900311 AGACTTAGATAAC
1 AGACTTAGCTAAC
*
15900324 AAACTT-GCTAAC
1 AGACTTAGCTAAC
15900336 AGACTTAGCTA
1 AGACTTAGCTA
15900347 CTTGTAGCGA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
12 10 0.33
13 20 0.67
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (13 bp):
AGACTTAGCTAAC
Found at i:15901778 original size:3 final size:3
Alignment explanation
Indices: 15901770--15901910 Score: 264
Period size: 3 Copynumber: 47.0 Consensus size: 3
15901760 GTATATACAT
* *
15901770 ATA ATA ATA ATG ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15901818 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15901866 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15901911 TGAAAATACA
Statistics
Matches: 136, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
3 136 1.00
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:15902990 original size:17 final size:17
Alignment explanation
Indices: 15902968--15903001 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
15902958 GACGGGTTAT
15902968 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
15902985 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
15903002 GGCCCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.41, T:0.53
Consensus pattern (17 bp):
TGGGTTGTTTGGTTTAG
Found at i:15903765 original size:72 final size:72
Alignment explanation
Indices: 15903667--15903818 Score: 193
Period size: 72 Copynumber: 2.1 Consensus size: 72
15903657 TGAAACTTAA
** * ** *
15903667 TTTGAAAAGCAGATTTTGAAAATACCTCAAT-G-AGTCTTGAGGCTCAACTCATTTCTCGCAATA
1 TTTGAAAAGCAGAAATTGAAAATACCTC-ATCGTA-TCCTGAGGCTCAACTCACCTCTAGCAATA
15903730 TGAGTTGAAT
64 TGAGTTG-AT
*
15903740 TTTGAAAA-CAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATG
15903804 AGTTGAT
66 AGTTGAT
15903811 TTTGAAAA
1 TTTGAAAA
15903819 AGTAGGAATT
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
71 12 0.17
72 49 0.70
73 9 0.13
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (72 bp):
TTTGAAAAGCAGAAATTGAAAATACCTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATG
AGTTGAT
Found at i:15903896 original size:127 final size:127
Alignment explanation
Indices: 15903720--15904240 Score: 933
Period size: 127 Copynumber: 4.1 Consensus size: 127
15903710 TCAACTCATT
15903720 TCTCGCAATATGAGTTGAATT-TTGA-AAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
1 TCTCGCAATATGAGTTG-ATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
15903783 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
65 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
* *
15903846 TCTCGCAATATGAGTTGATTCTTGACAGACAGAAATTGAAATTACCTCATCGTATCCTGAGGCCC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
15903911 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
15903973 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
15904038 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
15904100 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
* ** * *
15904165 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA-CAAAAATGAAAAGGCTT-AACTCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGG-TTCAACCCACC
15904226 TCTCGCAATATGAGT
1 TCTCGCAATATGAGT
15904241 CAATTTAAAA
Statistics
Matches: 383, Mismatches: 9, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
125 3 0.01
126 53 0.14
127 327 0.85
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (127 bp):
TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
Found at i:15904194 original size:254 final size:252
Alignment explanation
Indices: 15903720--15904315 Score: 935
Period size: 254 Copynumber: 2.4 Consensus size: 252
15903710 TCAACTCATT
15903720 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCA
15903785 ACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTCTC
66 ACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTCTC
*
15903850 GCAATATGAGTTGATTCTTGACAGACAGAAATTGAAATTACCTCATCGTATCCTGAGGCCCAACT
131 GCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCCCAACT
* ** *
15903915 CACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGG-TTCAACCCACC
196 CACCTCTAGCAATATGAGTTGATTTTGAAAAA-CAAAAATGAAAAGGCTT-AACCCACC
15903973 TCTCGCAATATGAGTTG-ATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
1 TCTCGCAATATGAGTTGAATT-TTGA-AAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
15904037 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTC
64 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTC
*
15904102 TCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAA
129 TCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCCCAA
*
15904167 CTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATGAAAAGGCTTAACTCACC
194 CTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATGAAAAGGCTTAACCCACC
* * * * ** *
15904226 TCTCGCAATATGAG-TCAA-TTT-AAAAC-----TAGAAA-TACCTCAGCATGCCCCGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCA
* *
15904282 ACTCACTTCTCGCAATATGAGTTGATTTTGAAAA
66 ACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
15904316 CAAAAATTAA
Statistics
Matches: 323, Mismatches: 16, Indels: 18
0.90 0.04 0.05
Matches are distributed among these distances:
243 51 0.16
244 5 0.02
249 4 0.01
250 1 0.00
251 2 0.01
252 5 0.02
253 53 0.16
254 202 0.63
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (252 bp):
TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCA
ACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACCTCTC
GCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCCCAACT
CACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATGAAAAGGCTTAACCCACC
Found at i:15908664 original size:3 final size:3
Alignment explanation
Indices: 15908656--15908700 Score: 72
Period size: 3 Copynumber: 15.0 Consensus size: 3
15908646 GTATATACAT
* *
15908656 ATA ATA ATA ATG ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
15908701 NNNNNNNNNN
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:15914216 original size:11 final size:11
Alignment explanation
Indices: 15914200--15914226 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
15914190 TAAAAAAATA
15914200 TTTTTTTTATT
1 TTTTTTTTATT
15914211 TTTTTTTTATT
1 TTTTTTTTATT
15914222 TTTTT
1 TTTTT
15914227 ATGTTTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTTTTTTATT
Found at i:15914819 original size:17 final size:17
Alignment explanation
Indices: 15914797--15914830 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
15914787 GACGGGTTAT
15914797 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
15914814 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
15914831 GGCCCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.41, T:0.53
Consensus pattern (17 bp):
TGGGTTGTTTGGTTTAG
Found at i:15918443 original size:20 final size:20
Alignment explanation
Indices: 15918418--15918457 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
15918408 AACCAAAATT
* *
15918418 TTCTTTTATTTTTTAGAGCA
1 TTCTTTGATTTTTTAAAGCA
15918438 TTCTTTGATTTTTTAAAGCA
1 TTCTTTGATTTTTTAAAGCA
15918458 AAAACTAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.10, T:0.57
Consensus pattern (20 bp):
TTCTTTGATTTTTTAAAGCA
Found at i:15918652 original size:12 final size:12
Alignment explanation
Indices: 15918631--15918667 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
15918621 TTTTACTTCT
15918631 ATTTGAATTTGG
1 ATTTGAATTTGG
*
15918643 ATTTGGATTTGG
1 ATTTGAATTTGG
*
15918655 ATTTAAATTTGG
1 ATTTGAATTTGG
15918667 A
1 A
15918668 GTGTGTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (12 bp):
ATTTGAATTTGG
Found at i:15919623 original size:17 final size:16
Alignment explanation
Indices: 15919602--15919633 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
15919592 AAGTAATGCA
15919602 AAAAAATCCACTGAAT
1 AAAAAATCCACTGAAT
15919618 AAAAAATCCACTGAAT
1 AAAAAATCCACTGAAT
15919634 TCAACATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.19, G:0.06, T:0.19
Consensus pattern (16 bp):
AAAAAATCCACTGAAT
Found at i:15923589 original size:40 final size:40
Alignment explanation
Indices: 15923535--15923612 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
15923525 CGGATGTAAC
15923535 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
15923575 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATA
15923613 TTTTTTTCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:15931709 original size:40 final size:40
Alignment explanation
Indices: 15931660--15931772 Score: 199
Period size: 40 Copynumber: 2.8 Consensus size: 40
15931650 GTAACAACTA
* *
15931660 GCACAAATGCCTTCGGGACTTAACCCGGTTATAATAACCT
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
15931700 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
*
15931740 GCACGAATGCCTTCGGGACTTAACCCGATTATA
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATA
15931773 TATATATATT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
Found at i:15948472 original size:16 final size:17
Alignment explanation
Indices: 15948441--15948473 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
15948431 TTCATAAGTA
15948441 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
15948458 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
15948474 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:15948820 original size:46 final size:46
Alignment explanation
Indices: 15948755--15949028 Score: 424
Period size: 46 Copynumber: 6.0 Consensus size: 46
15948745 TTATCTTTGA
* * * * * *
15948755 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
15948801 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
15948847 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** *
15948893 CATGTTTCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
15948939 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
15948985 TATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
15949029 TTCAAAGAGC
Statistics
Matches: 210, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 206 0.98
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:15950685 original size:17 final size:17
Alignment explanation
Indices: 15950665--15950697 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15950655 TCAATTTTCC
15950665 CTTTTCTTCTTTCTTTT
1 CTTTTCTTCTTTCTTTT
*
15950682 CTTTTTTTCTTTCTTT
1 CTTTTCTTCTTTCTTT
15950698 CCTTCCCCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (17 bp):
CTTTTCTTCTTTCTTTT
Found at i:15956257 original size:22 final size:22
Alignment explanation
Indices: 15956232--15956279 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
15956222 AGTCAACAAT
15956232 AATAAAACCAAATTCAAGTACA
1 AATAAAACCAAATTCAAGTACA
15956254 AATAAAACCAAATTCAAGTACA
1 AATAAAACCAAATTCAAGTACA
15956276 AATA
1 AATA
15956280 TTTTGTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.60, C:0.17, G:0.04, T:0.19
Consensus pattern (22 bp):
AATAAAACCAAATTCAAGTACA
Found at i:15962070 original size:96 final size:96
Alignment explanation
Indices: 15961904--15962097 Score: 253
Period size: 96 Copynumber: 2.0 Consensus size: 96
15961894 GTGTCCGAAG
* * * * * * * *
15961904 AAGTCTGTTATCGATGGGAATGATGGAGTAGACATGGAGCCCAAGAAGCTTGGTTTGAGCAAGGG
1 AAGTCTGTCATCAAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTAGTTTGAGCAAAGG
*
15961969 AAAAGCCGAAGCCAAGAAGGCAAAGAGGAGC
66 AAAAGCCGAAGCCAAGAACGCAAAGAGGAGC
* *
15962000 AAGTCTGTCATCAAAGGGAACGATGGAGCAGTCAAGGAGCCCAAGAAGTTTAGTTTGAGCAAAGG
1 AAGTCTGTCATCAAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTAGTTTGAGCAAAGG
* * * *
15962065 TAAAGCTGAAGCTAAGAACGCTAAGAGGAGC
66 AAAAGCCGAAGCCAAGAACGCAAAGAGGAGC
15962096 AA
1 AA
15962098 AAAGAAGCGA
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 83 1.00
ACGTcount: A:0.37, C:0.15, G:0.32, T:0.16
Consensus pattern (96 bp):
AAGTCTGTCATCAAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTAGTTTGAGCAAAGG
AAAAGCCGAAGCCAAGAACGCAAAGAGGAGC
Found at i:15972653 original size:14 final size:15
Alignment explanation
Indices: 15972631--15972661 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15972621 TTTATTCGAG
15972631 TTAATTTTTAAAAAA
1 TTAATTTTTAAAAAA
*
15972646 TTAATTTTAAAAAAA
1 TTAATTTTTAAAAAA
15972661 T
1 T
15972662 CCAAAAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAATTTTTAAAAAA
Found at i:15978413 original size:23 final size:22
Alignment explanation
Indices: 15978354--15978425 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 22
15978344 AAATATGATG
*
15978354 TAATAATAATATAAAATA-ACATA
1 TAATAA-AATATAAAATATATA-A
* * *
15978377 TATTAAAGTGTAAAATGATATAA
1 TAATAAAATATAAAAT-ATATAA
15978400 TAATAAAATATAAAATAGTATAA
1 TAATAAAATATAAAATA-TATAA
15978423 TAA
1 TAA
15978426 ATATTATGTA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
22 9 0.23
23 28 0.72
24 2 0.05
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (22 bp):
TAATAAAATATAAAATATATAA
Found at i:15978445 original size:24 final size:25
Alignment explanation
Indices: 15978413--15978478 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 25
15978403 TAAAATATAA
* *
15978413 AATAGTATAATAAATATTATGT-AAT
1 AATAATATAATAAATA-TAGGTAAAT
15978438 AA-AATATAATATAGATATAGGTAAAT
1 AATAATATAATA-A-ATATAGGTAAAT
15978464 AATAATAT-ATAAATA
1 AATAATATAATAAATA
15978479 AAGTTTATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
24 11 0.31
25 8 0.23
26 11 0.31
27 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (25 bp):
AATAATATAATAAATATAGGTAAAT
Found at i:15980024 original size:43 final size:43
Alignment explanation
Indices: 15979963--15980044 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
15979953 CATGCTGATA
15979963 TCTTCGATTTGTTCCCTGACAATACAGAGACGCCAAATCTGCT
1 TCTTCGATTTGTTCCCTGACAATACAGAGACGCCAAATCTGCT
*
15980006 TCTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATC
1 TCTTCGATTTGTTCCCTGACAATACAGAGACGCCAAATC
15980045 ATCTTAGATT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (43 bp):
TCTTCGATTTGTTCCCTGACAATACAGAGACGCCAAATCTGCT
Found at i:15980384 original size:176 final size:175
Alignment explanation
Indices: 15980080--15980448 Score: 560
Period size: 176 Copynumber: 2.1 Consensus size: 175
15980070 ACGTTAAAAC
* * *
15980080 CAAATCTGCTGTGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGGATCTGC
1 CAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
* *
15980145 TTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCA
66 TTCAGTAAAATCATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCCA
* ** *
15980210 GATTTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGT
131 GATCTGTTATCTTGGATCTGCTTTAATGTGAAAACATCCGAAAGT
* *
15980255 CAAATTTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCCAAATCATCTTGGATCTG
1 CAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATG-CCAAATCATCTTGGATCTG
* *
15980320 CTTCAGTATAAA-CATCTTAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATTGAGATGC
65 CTTCAGTA-AAATCATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGC
**
15980384 CAGATCTGTTATCTTGGATCTGCTTTAATGTGAAAACATTTGAAAGT
129 CAGATCTGTTATCTTGGATCTGCTTTAATGTGAAAACATCCGAAAGT
* *
15980431 CAGATCTGTTATGTCTTC
1 CAAATCTGCTATGTCTTC
15980449 AAGTTGCTTC
Statistics
Matches: 174, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
175 40 0.23
176 131 0.75
177 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (175 bp):
CAAATCTGCTATGTCTTCGATTTGCTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
TTCAGTAAAATCATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCCA
GATCTGTTATCTTGGATCTGCTTTAATGTGAAAACATCCGAAAGT
Found at i:15989265 original size:46 final size:46
Alignment explanation
Indices: 15989215--15989317 Score: 127
Period size: 46 Copynumber: 2.2 Consensus size: 46
15989205 GCCATAGTGC
* **
15989215 CTTTCAACTATGGTCTTACTCATTTTC-TATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACTCA-TTTCATATCACATTGCCATGGTAT
** * *
15989261 CTTTCAACCATGGTCTTGTTCATTTCATGTTACATTGCCATGGTAT
1 CTTTCAACCATGGTCTTACTCATTTCATATCACATTGCCATGGTAT
15989307 CTTTCAACCAT
1 CTTTCAACCAT
15989318 CCTCATTGTC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
45 4 0.08
46 45 0.92
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (46 bp):
CTTTCAACCATGGTCTTACTCATTTCATATCACATTGCCATGGTAT
Found at i:15991241 original size:46 final size:45
Alignment explanation
Indices: 15991191--15991625 Score: 586
Period size: 46 Copynumber: 9.6 Consensus size: 45
15991181 GCCATAGTGC
* * *
15991191 CTTTCAACTATGGTCTTACTCATTTTCTATCAGGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACA-TTTCTATCATGTTGCCATGGTAT
*** * * **
15991237 CTTTCAACCATGGTCTTGTTCATTTCATGTTACATTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTC-TATCATGTTGCCATGGTAT
** * * *
15991283 CTTTCAACCATGGTCTTATTCATTCCCATCATGTTGTCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCTATCATGTTGCCATGGTAT
* *
15991328 CTTTCAACCATGGCCTTACACATTTCATATCATGTTGCCATAGTAT
1 CTTTCAACCATGGTCTTACACATTTC-TATCATGTTGCCATGGTAT
*
15991374 CTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACA-TTTCTATCATGTTGCCATGGTAT
*
15991420 CTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTGT
1 CTTTCAACCATGGTCTTACACATTTC-TATCATGTTGCCATGGTAT
* * *
15991466 CTATCAACCATGGTCTTACATATTTC-ATCATGTTGCGATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCTATCATGTTGCCATGGTAT
*
15991510 CTTTCAACCATGGTCTTATACATTTCATATCATGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTC-TATCATGTTGCCATGGTAT
15991556 CTTTCAACCATGGTCTTACACATTTC-ATCATGTTGCCATGGTAT
1 CTTTCAACCATGGTCTTACACATTTCTATCATGTTGCCATGGTAT
*
15991600 CTTTCAACCATAGTCTTACACATTTC
1 CTTTCAACCATGGTCTTACACATTTC
15991626 ATTTCAGAAA
Statistics
Matches: 346, Mismatches: 37, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
44 82 0.24
45 42 0.12
46 219 0.63
47 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.40
Consensus pattern (45 bp):
CTTTCAACCATGGTCTTACACATTTCTATCATGTTGCCATGGTAT
Found at i:15991537 original size:90 final size:90
Alignment explanation
Indices: 15991191--15991627 Score: 599
Period size: 90 Copynumber: 4.8 Consensus size: 90
15991181 GCCATAGTGC
* * *
15991191 CTTTCAACTATGGTCTTAC-TCATTTTCTATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTG
1 CTTTCAACCATGGTCTTACAT-A-TTTC-ATCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
** * * **
15991255 TTCATTTCATGTTACATTGCCATGGTAT
63 CACATTTCATATCATGTTGCCATGGTAT
** * *
15991283 CTTTCAACCATGGTCTTATTCAT-TCCCATCATGTTGTCATGGTATCTTTCAACCATGGCCTTAC
1 CTTTCAACCATGGTCTTA--CATATTTCATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAC
*
15991347 ACATTTCATATCATGTTGCCATAGTAT
64 ACATTTCATATCATGTTGCCATGGTAT
* *
15991374 CTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAC
1 CTTTCAACCATGGTCTTACATA-TTT-CATCATGTTGCCATGGTATCTTTCAACCATGGTCTTAC
*
15991439 ACATTTCATATCATGTTGCCATGGTGT
64 ACATTTCATATCATGTTGCCATGGTAT
* * *
15991466 CTATCAACCATGGTCTTACATATTTCATCATGTTGCGATGGTATCTTTCAACCATGGTCTTATAC
1 CTTTCAACCATGGTCTTACATATTTCATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
15991531 ATTTCATATCATGTTGCCATGGTAT
66 ATTTCATATCATGTTGCCATGGTAT
* *
15991556 CTTTCAACCATGGTCTTACACATTTCATCATGTTGCCATGGTATCTTTCAACCATAGTCTTACAC
1 CTTTCAACCATGGTCTTACATATTTCATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
15991621 ATTTCAT
66 ATTTCAT
15991628 TTCAGAAAGC
Statistics
Matches: 306, Mismatches: 33, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
89 2 0.01
90 128 0.42
91 75 0.25
92 99 0.32
94 1 0.00
95 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.41
Consensus pattern (90 bp):
CTTTCAACCATGGTCTTACATATTTCATCATGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
ATTTCATATCATGTTGCCATGGTAT
Found at i:15997211 original size:32 final size:34
Alignment explanation
Indices: 15997175--15997252 Score: 79
Period size: 34 Copynumber: 2.3 Consensus size: 34
15997165 AGTGTAAAAT
15997175 AATATAATAACAAAATATAAAATAG-TATA-ATA
1 AATATAATAACAAAATATAAAATAGATATAGATA
* * * *
15997207 AATATTATGTAATAAAATATAATATAGATATAGGTA
1 AATA-TA-ATAACAAAATATAAAATAGATATAGATA
15997243 AATAATAATA
1 AAT-ATAATA
15997253 TATAAATAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
32 4 0.11
33 2 0.06
34 16 0.44
35 6 0.17
36 7 0.19
37 1 0.03
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.32
Consensus pattern (34 bp):
AATATAATAACAAAATATAAAATAGATATAGATA
Found at i:15997994 original size:13 final size:13
Alignment explanation
Indices: 15997976--15998001 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15997966 TTTTTAGTAT
15997976 AAAAAATGAGTTC
1 AAAAAATGAGTTC
15997989 AAAAAATGAGTTC
1 AAAAAATGAGTTC
15998002 TGTTTTTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23
Consensus pattern (13 bp):
AAAAAATGAGTTC
Found at i:15999757 original size:21 final size:21
Alignment explanation
Indices: 15999731--15999783 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
15999721 CATTGTTTTT
*
15999731 AATCTCACCGCTACAATATCG
1 AATCTCACCGCTACAATAACG
* *
15999752 AATCTCACCTCTACAATAACT
1 AATCTCACCGCTACAATAACG
15999773 AATCTCACCGC
1 AATCTCACCGC
15999784 CACCGCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.34, C:0.36, G:0.06, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACG
Found at i:16002079 original size:87 final size:87
Alignment explanation
Indices: 16001977--16002146 Score: 304
Period size: 87 Copynumber: 2.0 Consensus size: 87
16001967 TGCAATTAAA
* *
16001977 TTCTTTCAATAACATTTCAATTAGAGGACCAAGTTCATTTCATCCAATTTCAAATTCCCAATTTC
1 TTCTTTCAATAACATTTCAATTAGAAGACCAACTTCATTTCATCCAATTTCAAATTCCCAATTTC
16002042 ATTTATATCATTTCATCCGATG
66 ATTTATATCATTTCATCCGATG
* *
16002064 TTCTTTCAATAACATTTCAATTTGAAGACCAACTTCATTTCATCCAATTTCAAATTCCCAATTTT
1 TTCTTTCAATAACATTTCAATTAGAAGACCAACTTCATTTCATCCAATTTCAAATTCCCAATTTC
16002129 ATTTATATCATTTCATCC
66 ATTTATATCATTTCATCC
16002147 AATAGAACCT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 79 1.00
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.42
Consensus pattern (87 bp):
TTCTTTCAATAACATTTCAATTAGAAGACCAACTTCATTTCATCCAATTTCAAATTCCCAATTTC
ATTTATATCATTTCATCCGATG
Found at i:16003327 original size:278 final size:278
Alignment explanation
Indices: 16002830--16003361 Score: 1046
Period size: 278 Copynumber: 1.9 Consensus size: 278
16002820 AAATGAAAAC
*
16002830 TAAAACTCTTCTAAAAGAAACTTAAGAGAAATTCTTGAAAAGAAAAACTCAGAGAGAATTTATTA
1 TAAAACTCTTCTAAAAGAAACTCAAGAGAAATTCTTGAAAAGAAAAACTCAGAGAGAATTTATTA
*
16002895 ACTCAAAAGAGAAATAGAATAATAATGAATTGTCTTCCTTGTGTAGAATACAAAGGCTTATATAT
66 ACTCAAAAGAGAAATAGAATAATAATGAATTGTCTTCCTTGTGTAGAATACAAAGGCCTATATAT
16002960 AGGCTAGATAAATAAATCTAAATAAAACTCCTAAGTATATTAGAACTCTAATTTAATCTAAACAA
131 AGGCTAGATAAATAAATCTAAATAAAACTCCTAAGTATATTAGAACTCTAATTTAATCTAAACAA
16003025 GAAGTAGTTTTCAACTAAACTTTCTTGTTAACATAAAATTCCTAAATAACTTAAAATACATCCCC
196 GAAGTAGTTTTCAACTAAACTTTCTTGTTAACATAAAATTCCTAAATAACTTAAAATACATCCCC
16003090 ACAATCTAAAAAGATTGT
261 ACAATCTAAAAAGATTGT
16003108 TAAAACTCTTCTAAAAGAAACTCAAGAGAAATTCTTGAAAAGAAAAACTCAGAGAGAATTTATTA
1 TAAAACTCTTCTAAAAGAAACTCAAGAGAAATTCTTGAAAAGAAAAACTCAGAGAGAATTTATTA
16003173 ACTCAAAAGAGAAATAGAATAATAATGAATTGTCTTCCTTGTGTAGAATACAAAGGCCTATATAT
66 ACTCAAAAGAGAAATAGAATAATAATGAATTGTCTTCCTTGTGTAGAATACAAAGGCCTATATAT
16003238 AGGCTAGATAAATAAATCTAAATAAAACTCCTAAGTATATTAGAACTCTAATTTAATCTAAACAA
131 AGGCTAGATAAATAAATCTAAATAAAACTCCTAAGTATATTAGAACTCTAATTTAATCTAAACAA
16003303 GAAGTAGTTTTCAACTAAACTTTCTTGTTAACATAAAATTCCTAAATAACTTAAAATAC
196 GAAGTAGTTTTCAACTAAACTTTCTTGTTAACATAAAATTCCTAAATAACTTAAAATAC
16003362 TTAGAATAAA
Statistics
Matches: 252, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
278 252 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (278 bp):
TAAAACTCTTCTAAAAGAAACTCAAGAGAAATTCTTGAAAAGAAAAACTCAGAGAGAATTTATTA
ACTCAAAAGAGAAATAGAATAATAATGAATTGTCTTCCTTGTGTAGAATACAAAGGCCTATATAT
AGGCTAGATAAATAAATCTAAATAAAACTCCTAAGTATATTAGAACTCTAATTTAATCTAAACAA
GAAGTAGTTTTCAACTAAACTTTCTTGTTAACATAAAATTCCTAAATAACTTAAAATACATCCCC
ACAATCTAAAAAGATTGT
Found at i:16014397 original size:9 final size:8
Alignment explanation
Indices: 16014382--16014420 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
16014372 AACCCACAGA
16014382 ATTTTTTT
1 ATTTTTTT
16014390 ATTTTTTT
1 ATTTTTTT
16014398 ATTTTTTT
1 ATTTTTTT
*
16014406 CA-TATTTT
1 -ATTTTTTT
16014414 ATTTTTT
1 ATTTTTT
16014421 GTACTTTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 1 0.04
8 25 0.93
9 1 0.04
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (8 bp):
ATTTTTTT
Found at i:16016137 original size:26 final size:27
Alignment explanation
Indices: 16016079--16016130 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
16016069 ATTATTCTCT
* *
16016079 AAAATTTATTATAGATAAAATTTCAAA
1 AAAATATATTATAGAAAAAATTTCAAA
16016106 AAAATATATTATA-AAAAAATTTCAA
1 AAAATATATTATAGAAAAAATTTCAA
16016131 TGAAATAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (27 bp):
AAAATATATTATAGAAAAAATTTCAAA
Found at i:16025427 original size:18 final size:18
Alignment explanation
Indices: 16025404--16025439 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
16025394 GTAATTTGAG
*
16025404 TTTTTAATTAATATTTAT
1 TTTTTAATAAATATTTAT
*
16025422 TTTTTAATAAATGTTTAT
1 TTTTTAATAAATATTTAT
16025440 AAGATTAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (18 bp):
TTTTTAATAAATATTTAT
Found at i:16033440 original size:20 final size:20
Alignment explanation
Indices: 16033417--16033458 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
16033407 TGCTCTACTT
16033417 AGGACCATATGCAGATAGGA
1 AGGACCATATGCAGATAGGA
16033437 AGGACCATATGCAGATAGGA
1 AGGACCATATGCAGATAGGA
16033457 AG
1 AG
16033459 TCATATCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.14, G:0.31, T:0.14
Consensus pattern (20 bp):
AGGACCATATGCAGATAGGA
Found at i:16034342 original size:19 final size:19
Alignment explanation
Indices: 16034318--16034355 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
16034308 ATTGCAAAGT
16034318 CTGTCCACCAAATAGTATA
1 CTGTCCACCAAATAGTATA
16034337 CTGTCCACCAAATAGTATA
1 CTGTCCACCAAATAGTATA
16034356 AATAAAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.26
Consensus pattern (19 bp):
CTGTCCACCAAATAGTATA
Found at i:16049266 original size:50 final size:50
Alignment explanation
Indices: 16049191--16049367 Score: 273
Period size: 50 Copynumber: 3.5 Consensus size: 50
16049181 CCATGGCAAC
**
16049191 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATGAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
* *
16049241 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTAATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
*
16049291 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
* * *
16049341 CAAGTGAAAAGTGGTAGCTTCGACTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
16049368 CTGATCAGTG
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
50 93 0.80
51 23 0.20
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
Found at i:16049381 original size:31 final size:31
Alignment explanation
Indices: 16049343--16049460 Score: 191
Period size: 31 Copynumber: 3.8 Consensus size: 31
16049333 ACAAATGACA
*
16049343 AGTGAAAAGTGGTAGCTTCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
16049374 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
16049405 AGTGAAAAATGATAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
16049436 AGTGAATAGTGGTAGCTTCAGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
16049461 AAGTGACAAG
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 80 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Done.