Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 48 of 153
Found at i:16052889 original size:254 final size:252
Alignment explanation
Indices: 16052463--16053204 Score: 977
Period size: 254 Copynumber: 2.9 Consensus size: 252
16052453 GGCCGTGTGG
* * *
16052463 GCATTCGATGTGAGGAACACAGCCGTGTCACAGCCCGTGTACATGCCCGTGAAACTCTCTGACTT
1 GCATTCGATGTGAGGCACAC-GGCGTGTCCCAGCCCGTGTACATG-CCGTGAAACTCTCTGACTT
*
16052528 GGGTCACACGACCAAGTCACACGCCCATGTGTTAGGCCGTGTGTTATGGAATTAAGGTGCAGGGG
64 GGGTCACACGACCAAGTCACACG-CCATGTGCTAGGCCGTGTGTTATGGAATTAAGGTGCAGGGG
* * * * * *
16052593 CCACATGGCTAAGCCACACGCCCGTATGCTAGGCCATGTGCAAAAACTTGGGCATTCTATTTCTC
128 TCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACTTGGGCATTCTGTTTCTC
* * *
16052658 AAATTTAAAGATACAAGGGACACATGGCTAGGCCACACACCCATGTGCTAGGCCATGTAA
193 AAATTTAAAGATACAAGGGACACATCGCCAGACCACACACCCATGTGCTAGGCCATGTAA
* * *
16052718 GCATTCGATGTGAGGCACACGGTCGTGTCCCAACCCGTGTACATGCCATAAAACTCTCTGACTTG
1 GCATTCGATGTGAGGCACACGG-CGTGTCCCAGCCCGTGTACATGCCGTGAAACTCTCTGACTTG
* *
16052783 GGTTACATGACCAAGTCACACGCTCATGTGCTAGGCCGTGTGTTATGGAATTAAGGTGCAGGGGT
65 GGTCACACGACCAAGTCACACGC-CATGTGCTAGGCCGTGTGTTATGGAATTAAGGTGCAGGGGT
* * * *
16052848 CACACAGCCAAGCCACACGCCCGTGTGCTAGGCTGTGTGCAAAAACCTAGGCATTCTGTTTCTCA
129 CACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACTTGGGCATTCTGTTTCTCA
* * * * **
16052913 AATTTAAAGATA-TAGGAGACATATCGCCAGACCACACGCCCATGTGCTAGGCCGTGTGG
194 AATTTAAAGATACAAGG-GACACATCGCCAGACCACACACCCATGTGCTAGGCCATGTAA
* * * * *
16052972 GCATTTGATGTAAGGCATAAGGCTGTGTCCCAGCCCGTGTACATGCTCGTGTAACTCTCTGACTT
1 GCATTCGATGTGAGGCACACGGC-GTGTCCCAGCCCGTGTACATGC-CGTGAAACTCTCTGACTT
* * * * * * *
16053037 AGGTCACACGGCCAGGTCATACGCCTGTGTGCTAGACCGTATGTTATGGAATTAAGGTGCAGGGG
64 GGGTCACACGACCAAGTCACACGCC-ATGTGCTAGGCCGTGTGTTATGGAATTAAGGTGCAGGGG
* *
16053102 TCACACGGCCAAGCCACACGCCCATGTACTAGGCCGTGTGCAAAAA-TCTGGGCATTCTGTTTCT
128 TCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACT-TGGGCATTCTGTTTCT
*
16053166 CAAATTTAAAGATACAGGGGACACA-CAGCCAGACCACAC
192 CAAATTTAAAGATACAAGGGACACATC-GCCAGACCACAC
16053205 GTCCATGTTC
Statistics
Matches: 424, Mismatches: 54, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
253 5 0.01
254 221 0.52
255 196 0.46
256 2 0.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (252 bp):
GCATTCGATGTGAGGCACACGGCGTGTCCCAGCCCGTGTACATGCCGTGAAACTCTCTGACTTGG
GTCACACGACCAAGTCACACGCCATGTGCTAGGCCGTGTGTTATGGAATTAAGGTGCAGGGGTCA
CACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACTTGGGCATTCTGTTTCTCAAA
TTTAAAGATACAAGGGACACATCGCCAGACCACACACCCATGTGCTAGGCCATGTAA
Found at i:16053143 original size:255 final size:253
Alignment explanation
Indices: 16052453--16053225 Score: 1005
Period size: 255 Copynumber: 3.0 Consensus size: 253
16052443 CCGTGTCTTT
* * *
16052453 GGCCGTGTGGGCATTCGATGTGAGGAACACA-GCCGTGTCACAGCCCGTGTACATGCCCGTGAAA
1 GGCCGTGTGGGCATTCGATGTGAGGCACA-AGGCTGTGTCCCAGCCCGTGTACATG-CCGTGAAA
* *
16052517 CTCTCTGACTTGGGTCACACGACCAAGTCACACGCCCATGTGTTAGGCCGTGTGTTATGGAATTA
64 CTCTCTGACTTGGGTCACACGACCAAGTCACACGCCTATGTGCTAGGCCGTGTGTTATGGAATTA
* * * * * *
16052582 AGGTGCAGGGGCCACATGGCTAAGCCACACGCCCGTATGCTAGGCCATGTGCAAAAACTTGGGCA
129 AGGTGCAGGGGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACCTGGGCA
* * * * *
16052647 TTCTATTTCTCAAATTTAAAGATACAAGGGACACATGGCTAGGCCACACACCCATGTGCTA
194 TTCTGTTTCTCAAATTTAAAGATA-AAGGGACACATCGCCAGACCACACGCCCATGTGCTA
* ** * * * *
16052708 GGCCATGTAAGCATTCGATGTGAGGCACACGG-TCGTGTCCCAACCCGTGTACATGCCATAAAAC
1 GGCCGTGTGGGCATTCGATGTGAGGCACAAGGCT-GTGTCCCAGCCCGTGTACATGCCGTGAAAC
* *
16052772 TCTCTGACTTGGGTTACATGACCAAGTCACACG-CTCATGTGCTAGGCCGTGTGTTATGGAATTA
65 TCTCTGACTTGGGTCACACGACCAAGTCACACGCCT-ATGTGCTAGGCCGTGTGTTATGGAATTA
* * *
16052836 AGGTGCAGGGGTCACACAGCCAAGCCACACGCCCGTGTGCTAGGCTGTGTGCAAAAACCTAGGCA
129 AGGTGCAGGGGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACCTGGGCA
* *
16052901 TTCTGTTTCTCAAATTTAAAGATATAGGAGACATATCGCCAGACCACACGCCCATGTGCTA
194 TTCTGTTTCTCAAATTTAAAGATAAAGG-GACACATCGCCAGACCACACGCCCATGTGCTA
* * * *
16052962 GGCCGTGTGGGCATTTGATGTAAGGCATAAGGCTGTGTCCCAGCCCGTGTACATGCTCGTGTAAC
1 GGCCGTGTGGGCATTCGATGTGAGGCACAAGGCTGTGTCCCAGCCCGTGTACATGC-CGTGAAAC
* * * * * * *
16053027 TCTCTGACTTAGGTCACACGGCCAGGTCATACGCCTGTGTGCTAGACCGTATGTTATGGAATTAA
65 TCTCTGACTTGGGTCACACGACCAAGTCACACGCCTATGTGCTAGGCCGTGTGTTATGGAATTAA
* * *
16053092 GGTGCAGGGGTCACACGGCCAAGCCACACGCCCATGTACTAGGCCGTGTGCAAAAATCTGGGCAT
130 GGTGCAGGGGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACCTGGGCAT
* * *
16053157 TCTGTTTCTCAAATTTAAAGATACAGGGGACACA-CAGCCAGACCACACGTCCATGTTCTA
195 TCTGTTTCTCAAATTTAAAGATA-AAGGGACACATC-GCCAGACCACACGCCCATGTGCTA
*
16053217 GACCGTGTG
1 GGCCGTGTG
16053226 TCAAAGACAC
Statistics
Matches: 447, Mismatches: 62, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
253 4 0.01
254 218 0.49
255 221 0.49
256 4 0.01
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (253 bp):
GGCCGTGTGGGCATTCGATGTGAGGCACAAGGCTGTGTCCCAGCCCGTGTACATGCCGTGAAACT
CTCTGACTTGGGTCACACGACCAAGTCACACGCCTATGTGCTAGGCCGTGTGTTATGGAATTAAG
GTGCAGGGGTCACACGGCCAAGCCACACGCCCGTGTGCTAGGCCGTGTGCAAAAACCTGGGCATT
CTGTTTCTCAAATTTAAAGATAAAGGGACACATCGCCAGACCACACGCCCATGTGCTA
Found at i:16054083 original size:42 final size:42
Alignment explanation
Indices: 16054027--16054130 Score: 129
Period size: 42 Copynumber: 2.5 Consensus size: 42
16054017 GTGCTAAATA
* ** *
16054027 GAAACCCGTAAGGGTTGGTCAGAAGCTCATAAA-AGCTGAATG
1 GAAACCCATAAGGGTTGAACAGAAGCTCA-AAAGAGCTGAACG
* *
16054069 GAAATCCATAAGGGTTCAACAGAAGCTCAAAAGAGCTGAACG
1 GAAACCCATAAGGGTTGAACAGAAGCTCAAAAGAGCTGAACG
*
16054111 GAAACCCATTAGGGTTGAAC
1 GAAACCCATAAGGGTTGAAC
16054131 GAAAACTCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 3 0.06
42 49 0.94
ACGTcount: A:0.38, C:0.18, G:0.26, T:0.17
Consensus pattern (42 bp):
GAAACCCATAAGGGTTGAACAGAAGCTCAAAAGAGCTGAACG
Found at i:16054353 original size:42 final size:42
Alignment explanation
Indices: 16054293--16054373 Score: 137
Period size: 42 Copynumber: 1.9 Consensus size: 42
16054283 CCGTGTTGGT
16054293 CAGAAGCTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAA
1 CAGAAGCTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAA
*
16054335 CAGAAGCTCA-AAAGAGCTGAACGGAAACCCATTAGGGTT
1 CAGAAGCTCATAAA-AGCTGAACGGAAACCCATAAGGGTT
16054374 GAACGAAAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
41 3 0.08
42 34 0.92
ACGTcount: A:0.41, C:0.21, G:0.23, T:0.15
Consensus pattern (42 bp):
CAGAAGCTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAA
Found at i:16054378 original size:21 final size:21
Alignment explanation
Indices: 16054310--16054383 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
16054300 TCATAAAAGC
16054310 TGAACGGAAACCCATAAGGGT
1 TGAACGGAAACCCATAAGGGT
* * * * * * *
16054331 TCAACAGAAGCTCAAAAGAGC
1 TGAACGGAAACCCATAAGGGT
*
16054352 TGAACGGAAACCCATTAGGGT
1 TGAACGGAAACCCATAAGGGT
*
16054373 TGAACGAAAAC
1 TGAACGGAAAC
16054384 TCGTATGAGT
Statistics
Matches: 37, Mismatches: 16, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.42, C:0.20, G:0.24, T:0.14
Consensus pattern (21 bp):
TGAACGGAAACCCATAAGGGT
Found at i:16054476 original size:247 final size:247
Alignment explanation
Indices: 16054040--16054536 Score: 931
Period size: 247 Copynumber: 2.0 Consensus size: 247
16054030 ACCCGTAAGG
* *
16054040 GTTGGTCAGAAGCTCATAAAAGCTGAATGGAAATCCATAAGGGTTCAACAGAAGCTCAAAAGAGC
1 GTTGGTCAGAAGCTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAACAGAAGCTCAAAAGAGC
16054105 TGAACGGAAACCCATTAGGGTTGAACGAAAACTCATATGAGTTAAACAAAAACTTGTGAGAGCTA
66 TGAACGGAAACCCATTAGGGTTGAACGAAAACTCATATGAGTTAAACAAAAACTTGTGAGAGCTA
*
16054170 AATGGAAAGTAAACACGAAAGTTCGCAACAAATGCTAAACCTCGATTTACTTGAGTAATTTTTCG
131 AATGGAAAGTAAACACGAAAGTTCGCAACAAATACTAAACCTCGATTTACTTGAGTAATTTTTCG
16054235 TCAATTCTTCCTTTGCTGTCTTTCACCACACAATGATTTTACTCAATCCCGT
196 TCAATTCTTCCTTTGCTGTCTTTCACCACACAATGATTTTACTCAATCCCGT
16054287 GTTGGTCAGAAGCTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAACAGAAGCTCAAAAGAGC
1 GTTGGTCAGAAGCTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAACAGAAGCTCAAAAGAGC
*
16054352 TGAACGGAAACCCATTAGGGTTGAACGAAAACTCGTATGAGTTAAACAAAAACTTGTGAGAGCTA
66 TGAACGGAAACCCATTAGGGTTGAACGAAAACTCATATGAGTTAAACAAAAACTTGTGAGAGCTA
* *
16054417 AATGGAAAGTAAACACGAAAGTTCGCAACAAATACTGAACCTCGATTTAGTTGAGTAATTTTTCG
131 AATGGAAAGTAAACACGAAAGTTCGCAACAAATACTAAACCTCGATTTACTTGAGTAATTTTTCG
*
16054482 TCAATTCTTCCTTTGCTGTCTTTCACCACACAATGATTTTACTCAATCTCGT
196 TCAATTCTTCCTTTGCTGTCTTTCACCACACAATGATTTTACTCAATCCCGT
16054534 GTT
1 GTT
16054537 CCATTTGTTT
Statistics
Matches: 243, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
247 243 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (247 bp):
GTTGGTCAGAAGCTCATAAAAGCTGAACGGAAACCCATAAGGGTTCAACAGAAGCTCAAAAGAGC
TGAACGGAAACCCATTAGGGTTGAACGAAAACTCATATGAGTTAAACAAAAACTTGTGAGAGCTA
AATGGAAAGTAAACACGAAAGTTCGCAACAAATACTAAACCTCGATTTACTTGAGTAATTTTTCG
TCAATTCTTCCTTTGCTGTCTTTCACCACACAATGATTTTACTCAATCCCGT
Found at i:16057715 original size:2 final size:2
Alignment explanation
Indices: 16057691--16057736 Score: 64
Period size: 2 Copynumber: 25.0 Consensus size: 2
16057681 GAATTATTAT
16057691 TA TA T- TA TA T- TA T- TA TA -A TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
16057729 TA TA TA TA
1 TA TA TA TA
16057737 GATAGAGAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
1 4 0.10
2 36 0.90
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:16058999 original size:26 final size:25
Alignment explanation
Indices: 16058960--16059014 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 25
16058950 TATTTTGAGA
* *
16058960 TGATTATTTGAATTGGATTGAATAT
1 TGATTATTTGAATTGAAATGAATAT
16058985 TGATTATATTGAATTGAAATGAATAT
1 TGATTAT-TTGAATTGAAATGAATAT
16059011 TGAT
1 TGAT
16059015 GTGGAAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 7 0.26
26 20 0.74
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.45
Consensus pattern (25 bp):
TGATTATTTGAATTGAAATGAATAT
Found at i:16059379 original size:45 final size:45
Alignment explanation
Indices: 16059322--16059425 Score: 136
Period size: 45 Copynumber: 2.3 Consensus size: 45
16059312 ACTACTGTTT
* **
16059322 CTGTTACCGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAATA
1 CTGTTACTGTTACTGTTACCGATTCAACACTTTGTGTGTCGAATA
* * ** *
16059367 TTGTTACTGTTACAGTTGTCGATTCAACACTTTGTGTGTTGAATA
1 CTGTTACTGTTACTGTTACCGATTCAACACTTTGTGTGTCGAATA
16059412 CTGTTACTGTTACT
1 CTGTTACTGTTACT
16059426 ATTCCGAATT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.42
Consensus pattern (45 bp):
CTGTTACTGTTACTGTTACCGATTCAACACTTTGTGTGTCGAATA
Found at i:16059625 original size:18 final size:18
Alignment explanation
Indices: 16059604--16059794 Score: 167
Period size: 18 Copynumber: 10.6 Consensus size: 18
16059594 TAACTGATTA
16059604 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
16059622 TTACCGGATAATTGACTG
1 TTACTGAATAATTGACTG
*
16059640 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* * *
16059658 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
16059676 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
16059694 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
**
16059712 TCGCTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* *
16059730 TTACTGAATAACTTAATTG
1 TTACTGAATAA-TTGACTG
*
16059749 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
16059766 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
16059784 TTACTGGATAA
1 TTACTGAATAA
16059795 CCGATCAATT
Statistics
Matches: 142, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
17 20 0.14
18 104 0.73
19 18 0.13
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.38
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:16059729 original size:72 final size:72
Alignment explanation
Indices: 16059592--16059794 Score: 198
Period size: 72 Copynumber: 2.8 Consensus size: 72
16059582 AAAGGTATAA
* * * * * * * *
16059592 AATAACTGATTATTACTGAATAATTGA-CTGTTACCGGATAATTGACTGTTACTGGATATTAGAC
1 AATAACTGAATATTACTGAATAATTGATC-ATTACTGAATAACTGACTGTCACTGAATAATAGAC
16059656 TGTTACTG
65 TGTTACTG
* *
16059664 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGATTGTCGCTGAATGAAT-GAC
1 AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGACTGTCACTGAAT-AATAGAC
16059728 TGTTACTG
65 TGTTACTG
* * * * * *
16059736 AATAACTTAATTGTTACTGAAT-ATCTGAT-TTTACTGAATAATTGACTGTTACTGGATAA
1 AATAACTGAA-TATTACTGAATAAT-TGATCATTACTGAATAACTGACTGTCACTGAATAA
16059795 CCGATCAATT
Statistics
Matches: 109, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
71 2 0.02
72 90 0.83
73 17 0.16
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.37
Consensus pattern (72 bp):
AATAACTGAATATTACTGAATAATTGATCATTACTGAATAACTGACTGTCACTGAATAATAGACT
GTTACTG
Found at i:16064303 original size:3 final size:3
Alignment explanation
Indices: 16064297--16064369 Score: 76
Period size: 3 Copynumber: 24.7 Consensus size: 3
16064287 TTGCTTAATA
* * ** *
16064297 TAT TAT TGT TAT TAT TTT TAT CCT CAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
16064345 TAA TAT T-T TAT TAT TAC TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
16064370 GCATTAGCAT
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
2 2 0.04
3 55 0.96
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:16065196 original size:114 final size:114
Alignment explanation
Indices: 16064919--16065166 Score: 496
Period size: 114 Copynumber: 2.2 Consensus size: 114
16064909 TTTGAGATAA
16064919 TCGTGCCCTAACTTACTGGGTTTTGATTTTTCTCATTTAACCTAAATAACGGGATACTCTTTTAA
1 TCGTGCCCTAACTTACTGGGTTTTGATTTTTCTCATTTAACCTAAATAACGGGATACTCTTTTAA
16064984 ATCGCTATACGAGTTGTAGAAAAATGCTTATTCTCGGAGACACGAATCG
66 ATCGCTATACGAGTTGTAGAAAAATGCTTATTCTCGGAGACACGAATCG
16065033 TCGTGCCCTAACTTACTGGGTTTTGATTTTTCTCATTTAACCTAAATAACGGGATACTCTTTTAA
1 TCGTGCCCTAACTTACTGGGTTTTGATTTTTCTCATTTAACCTAAATAACGGGATACTCTTTTAA
16065098 ATCGCTATACGAGTTGTAGAAAAATGCTTATTCTCGGAGACACGAATCG
66 ATCGCTATACGAGTTGTAGAAAAATGCTTATTCTCGGAGACACGAATCG
16065147 TCGTGCCCTAACTTACTGGG
1 TCGTGCCCTAACTTACTGGG
16065167 CTTCGACTTC
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 134 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (114 bp):
TCGTGCCCTAACTTACTGGGTTTTGATTTTTCTCATTTAACCTAAATAACGGGATACTCTTTTAA
ATCGCTATACGAGTTGTAGAAAAATGCTTATTCTCGGAGACACGAATCG
Found at i:16076195 original size:87 final size:89
Alignment explanation
Indices: 16076031--16076201 Score: 233
Period size: 87 Copynumber: 1.9 Consensus size: 89
16076021 ATTTACAGAC
* * *
16076031 CTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTCCAGATTCTAACTCCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACCGAAGATTTACAGATTCTAACTCCCTAAGCAGTAG
16076096 GGAAACAGATCAAAGACGAAGGGT
66 GGAAACAGATCAAAGACGAAGGGT
* *
16076120 CTTAAACCCCTAAGTAGTAGGGTAACAGACCG-A-ATTTACAGA-TCTTATCTCCCTAAGCAGTA
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACCGAAGATTTACAGATTC-TAACTCCCTAAGCAGT-
* *
16076182 ATGG-AGCAGATCAAAGACGA
64 AGGGAAACAGATCAAAGACGA
16076202 TTAGCCTTGA
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
86 2 0.03
87 38 0.52
88 4 0.05
89 29 0.40
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (89 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGACCGAAGATTTACAGATTCTAACTCCCTAAGCAGTAG
GGAAACAGATCAAAGACGAAGGGT
Found at i:16076334 original size:68 final size:69
Alignment explanation
Indices: 16076249--16076383 Score: 184
Period size: 69 Copynumber: 2.0 Consensus size: 69
16076239 ATCACCAATC
* * * *
16076249 TCTTCTCCCTGAAATGGCGTTGGAGCAGCT-AAAAGCCACAGCAGATCTT-CTTGAAGTTTCAGC
1 TCTTCTCCCTAAAATGGCATTGGAACAACTAAAAAGCCACAGCAGAT-TTCCTTGAAGTTTCAGC
16076312 GGATT
65 GGATT
* * *
16076317 TCTTCTTCCTAAAATGGCATTGGAACAACTAAAAAGTCACAGTAGATTTCCTTGAAGTTTCAGCG
1 TCTTCTCCCTAAAATGGCATTGGAACAACTAAAAAGCCACAGCAGATTTCCTTGAAGTTTCAGCG
16076382 GA
66 GA
16076384 AGAAGGTCAA
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
68 27 0.47
69 31 0.53
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (69 bp):
TCTTCTCCCTAAAATGGCATTGGAACAACTAAAAAGCCACAGCAGATTTCCTTGAAGTTTCAGCG
GATT
Found at i:16076445 original size:44 final size:44
Alignment explanation
Indices: 16076395--16076848 Score: 262
Period size: 44 Copynumber: 10.0 Consensus size: 44
16076385 GAAGGTCAAA
* *
16076395 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGGAGTT
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGTT
* *
16076439 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGGAGTA
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGTT
** * * *
16076483 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAGCTAAAGAT
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGTT
* * * *
16076527 AGCAAATCTAATTTCCCTGAAGTTGCAGTGGAAC-AGATTGAAGCTAT
1 A-CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTGAAG-T-T
* ** * * * *
16076574 GAATAAACAGATCTTATCTATCTGAAGTTGCAGTAGAG-AAGATCAA--A
1 --ACAAAC----CTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGTT
* *
16076621 ACAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTGAAGTT
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGTT
* * * * * *
16076665 ACAAGCTTTATCTCCCTGAAGTTGCAGTAGAGTACA-CTGAAGAT
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCA-AGTTGAAGTT
* *
16076709 AGCAAGTCCTGT-T-TCCCTGAAGTTGCAGTGGAAC-AGATTGAAGCTAT
1 A-CAA-ACCT-TATCTCCCTGAAGTTGCAGTGGAGCAAG-TTGAAG-T-T
* * * * *
16076756 GAATAAACAGATCTTATCTCCCTGAAGTTGCAGTGGGGC-AGACTAAAGAT
1 --ACAAAC----CTTATCTCCCTGAAGTTGCAGTGGAGCAAG-TTGAAGTT
* * *
16076806 AGCAAATCTTATTTCCCTGAAGTTGCAATGGAGCACA-TTGAAG
1 A-CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCA-AGTTGAAG
16076849 ATGCCTGGAG
Statistics
Matches: 312, Mismatches: 65, Indels: 65
0.71 0.15 0.15
Matches are distributed among these distances:
41 22 0.07
42 5 0.02
43 1 0.00
44 118 0.38
45 91 0.29
46 3 0.01
47 5 0.02
48 6 0.02
49 5 0.02
50 2 0.01
51 6 0.02
52 48 0.15
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (44 bp):
ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGTT
Found at i:16076711 original size:182 final size:185
Alignment explanation
Indices: 16076401--16076848 Score: 577
Period size: 182 Copynumber: 2.4 Consensus size: 185
16076391 CAAAACAAAC
* * * ** ** * *
16076401 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGGAGTTACAAACCTTATCTCCCTGAAGTTGCAG
1 CTTATCTACCTGAAGTTGCAGTAGAGAAGACTAAAGATACAAACCTTATCTCCCTGAAGTTGCAA
* *
16076466 TGGAGCAAGTTGGAGTAACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAGCTAAAGATAGCA
66 TGGAGCAAGTTGAAGTAACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAAGCTAAAGATAGCA
16076531 AAT-CTAATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATGAATAAACAGAT
131 AATCCT-ATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATGAATAAACAGAT
* *
16076586 CTTATCTATCTGAAGTTGCAGTAGAGAAGA-TCAA-A-ACAAACCTTATCTCCCTGAAGTTGCAA
1 CTTATCTACCTGAAGTTGCAGTAGAGAAGACTAAAGATACAAACCTTATCTCCCTGAAGTTGCAA
* * * *
16076648 TGGAGCAGGTTGAAGTTACAAG-CTTTATCTCCCTGAAGTTGCAGTAGAGTACA-CTGAAGATAG
66 TGGAGCAAGTTGAAGTAACAAGTC-TTATCTCCCTGAAGTTGCAGTAGAGCA-AGCTAAAGATAG
* *
16076711 CAAGTCCTGTTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATGAATAAACAGAT
129 CAAATCCTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATGAATAAACAGAT
* * * * * *
16076768 CTTATCTCCCTGAAGTTGCAGTGGGGCAGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCA
1 CTTATCTACCTGAAGTTGCAGTAGAGAAGACTAAAGATA-CAAACCTTATCTCCCTGAAGTTGCA
16076833 ATGGAGCACA-TTGAAG
65 ATGGAGCA-AGTTGAAG
16076849 ATGCCTGGAG
Statistics
Matches: 229, Mismatches: 26, Indels: 15
0.85 0.10 0.06
Matches are distributed among these distances:
181 1 0.00
182 156 0.68
183 6 0.03
184 3 0.01
185 26 0.11
186 37 0.16
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (185 bp):
CTTATCTACCTGAAGTTGCAGTAGAGAAGACTAAAGATACAAACCTTATCTCCCTGAAGTTGCAA
TGGAGCAAGTTGAAGTAACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAAGCTAAAGATAGCA
AATCCTATTTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATGAATAAACAGAT
Found at i:16076751 original size:45 final size:45
Alignment explanation
Indices: 16076633--16076850 Score: 152
Period size: 45 Copynumber: 4.7 Consensus size: 45
16076623 AAACCTTATC
* * * * *
16076633 TCCCTGAAGTTGCAATGGAGCAGGTTGAAGTTA-CAAG-CTTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTC-CTATT
* * * * *
16076677 TCCCTGAAGTTGCAGTAGAGTACACTGAAGATAGCAAGTCCTGTT
1 TCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCCTATT
* ** * *
16076722 TCCCTGAAGTTGCAGTGGAACAGATTGAAGCTATGAATAAACAGATCTTATC
1 TCCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A-GCA-AG-TCCTATT
* * * * *
16076774 TCCCTGAAGTTGCAGTGGGGCAGACTAAAGATAGCAAATCTTATT
1 TCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCCTATT
* *
16076819 TCCCTGAAGTTGCAATGGAGCACATTGAAGAT
1 TCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT
16076851 GCCTGGAGAA
Statistics
Matches: 132, Mismatches: 33, Indels: 17
0.73 0.18 0.09
Matches are distributed among these distances:
44 26 0.20
45 64 0.48
46 2 0.02
47 3 0.02
48 1 0.01
49 1 0.01
50 3 0.02
51 2 0.02
52 30 0.23
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (45 bp):
TCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAGTCCTATT
Found at i:16076846 original size:97 final size:97
Alignment explanation
Indices: 16076672--16076848 Score: 255
Period size: 97 Copynumber: 1.8 Consensus size: 97
16076662 GTTACAAGCT
* * * * *
16076672 TTATCTCCCTGAAGTTGCAGTAGAGTACACTGAAGATAGCAAGTCCTGTTTCCCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTAGAGCACACTAAAGATAGCAAATCCTATTTCCCTGAAGTTGCAA
*
16076737 TGGAACAGATTGAAGCTATGAATAAACAGATC
66 TGGAACACATTGAAGCTATGAATAAACAGATC
* * * *
16076769 TTATCTCCCTGAAGTTGCAGTGGGGCAGACTAAAGATAGCAAATCTTATTTCCCTGAAGTTGCAA
1 TTATCTCCCTGAAGTTGCAGTAGAGCACACTAAAGATAGCAAATCCTATTTCCCTGAAGTTGCAA
*
16076834 TGGAGCACATTGAAG
66 TGGAACACATTGAAG
16076849 ATGCCTGGAG
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
97 69 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (97 bp):
TTATCTCCCTGAAGTTGCAGTAGAGCACACTAAAGATAGCAAATCCTATTTCCCTGAAGTTGCAA
TGGAACACATTGAAGCTATGAATAAACAGATC
Found at i:16077811 original size:18 final size:18
Alignment explanation
Indices: 16077788--16077823 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
16077778 TATTTTCGTC
16077788 CTCAGTCCCTCCACTTTT
1 CTCAGTCCCTCCACTTTT
*
16077806 CTCAGTCCCTCCGCTTTT
1 CTCAGTCCCTCCACTTTT
16077824 GAGGCTGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.08, C:0.44, G:0.08, T:0.39
Consensus pattern (18 bp):
CTCAGTCCCTCCACTTTT
Found at i:16078126 original size:3 final size:3
Alignment explanation
Indices: 16078120--16078192 Score: 76
Period size: 3 Copynumber: 24.7 Consensus size: 3
16078110 TTGCTTAATA
* * ** *
16078120 TAT TAT TGT TAT TAT TTT TAT CCT CAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
16078168 TAA TAT T-T TAT TAT TAC TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
16078193 GCATTAGCAT
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
2 2 0.04
3 55 0.96
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:16079572 original size:26 final size:26
Alignment explanation
Indices: 16079542--16079594 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
16079532 AAGACTCCGT
** *
16079542 AGATTGAGTCAAATTTTAAATTTTAA
1 AGATTGAAACAAATTTTAAACTTTAA
16079568 AGATTGAAACAAATTTTAAACTTTAA
1 AGATTGAAACAAATTTTAAACTTTAA
16079594 A
1 A
16079595 TTTGGAGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (26 bp):
AGATTGAAACAAATTTTAAACTTTAA
Found at i:16080205 original size:15 final size:15
Alignment explanation
Indices: 16080185--16080215 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
16080175 TGTTTAATCA
*
16080185 ATTATAGGTTCTATC
1 ATTATAGATTCTATC
16080200 ATTATAGATTCTATC
1 ATTATAGATTCTATC
16080215 A
1 A
16080216 GAAATCATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.10, T:0.45
Consensus pattern (15 bp):
ATTATAGATTCTATC
Found at i:16082316 original size:3 final size:3
Alignment explanation
Indices: 16082310--16082340 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
16082300 AAGAAGTTTT
*
16082310 TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
16082341 GTCATATGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:16083911 original size:24 final size:24
Alignment explanation
Indices: 16083823--16083948 Score: 100
Period size: 24 Copynumber: 5.3 Consensus size: 24
16083813 TAACTCGTAT
* *
16083823 GAGCTTACTG-TTTTAGCTCATTG
1 GAGCTTACTGTTTTTAGCTCAATA
* * *
16083846 GAGCTTATTG-ATTCAGCTCGAA-A
1 GAGCTTACTGTTTTTAGCTC-AATA
* *
16083869 GACCTTA-T-TATTTAGCTCAATA
1 GAGCTTACTGTTTTTAGCTCAATA
*
16083891 GAGCTTACTGTTTTTATCTCAATA
1 GAGCTTACTGTTTTTAGCTCAATA
* *
16083915 GAGCTTACTGTTTATCAGCTCAGTAA
1 GAGCTTACTGTTT-TTAGCTCAAT-A
16083941 GAGCTTAC
1 GAGCTTAC
16083949 CGACCATGAC
Statistics
Matches: 83, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
21 2 0.02
22 16 0.19
23 23 0.28
24 26 0.31
25 7 0.08
26 9 0.11
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.38
Consensus pattern (24 bp):
GAGCTTACTGTTTTTAGCTCAATA
Found at i:16089655 original size:246 final size:246
Alignment explanation
Indices: 16089221--16089714 Score: 988
Period size: 246 Copynumber: 2.0 Consensus size: 246
16089211 ATATAGTCAT
16089221 CTTTTTCTGAGACTGTAAAACCCTCTGGTTGTTGCATGTAAATATCCTCCTCAAGTTCTCCATGC
1 CTTTTTCTGAGACTGTAAAACCCTCTGGTTGTTGCATGTAAATATCCTCCTCAAGTTCTCCATGC
16089286 AAAAATACAGTTTTTACATCTATCTGCTCAAGCTCCAAATCATGCATGGCCATAATACCAAGCAA
66 AAAAATACAGTTTTTACATCTATCTGCTCAAGCTCCAAATCATGCATGGCCATAATACCAAGCAA
16089351 AGCTTGAATTGAACTATGCTTAACAACTGGGGAGAACACATCTGTGAAGTCCACTCCTGGAATTT
131 AGCTTGAATTGAACTATGCTTAACAACTGGGGAGAACACATCTGTGAAGTCCACTCCTGGAATTT
16089416 GACTGTAACCCTTTGCAACAAGCCTTGCCTTATATCTAGGTGCTTCAACTC
196 GACTGTAACCCTTTGCAACAAGCCTTGCCTTATATCTAGGTGCTTCAACTC
16089467 CTTTTTCTGAGACTGTAAAACCCTCTGGTTGTTGCATGTAAATATCCTCCTCAAGTTCTCCATGC
1 CTTTTTCTGAGACTGTAAAACCCTCTGGTTGTTGCATGTAAATATCCTCCTCAAGTTCTCCATGC
16089532 AAAAATACAGTTTTTACATCTATCTGCTCAAGCTCCAAATCATGCATGGCCATAATACCAAGCAA
66 AAAAATACAGTTTTTACATCTATCTGCTCAAGCTCCAAATCATGCATGGCCATAATACCAAGCAA
16089597 AGCTTGAATTGAACTATGCTTAACAACTGGGGAGAACACATCTGTGAAGTCCACTCCTGGAATTT
131 AGCTTGAATTGAACTATGCTTAACAACTGGGGAGAACACATCTGTGAAGTCCACTCCTGGAATTT
16089662 GACTGTAACCCTTTGCAACAAGCCTTGCCTTATATCTAGGTGCTTCAACTC
196 GACTGTAACCCTTTGCAACAAGCCTTGCCTTATATCTAGGTGCTTCAACTC
16089713 CT
1 CT
16089715 AGAGTCCCTT
Statistics
Matches: 248, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
246 248 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.31
Consensus pattern (246 bp):
CTTTTTCTGAGACTGTAAAACCCTCTGGTTGTTGCATGTAAATATCCTCCTCAAGTTCTCCATGC
AAAAATACAGTTTTTACATCTATCTGCTCAAGCTCCAAATCATGCATGGCCATAATACCAAGCAA
AGCTTGAATTGAACTATGCTTAACAACTGGGGAGAACACATCTGTGAAGTCCACTCCTGGAATTT
GACTGTAACCCTTTGCAACAAGCCTTGCCTTATATCTAGGTGCTTCAACTC
Found at i:16090378 original size:60 final size:60
Alignment explanation
Indices: 16090285--16090406 Score: 235
Period size: 60 Copynumber: 2.0 Consensus size: 60
16090275 TTATAACCAA
*
16090285 GAAAAATACATTTAATGGATCTCGGTTCCAATTTTGTATTATCAACATGAGCATACGCAG
1 GAAAAATACATTTAATGGATCTCGGTTCCAATTTTCTATTATCAACATGAGCATACGCAG
16090345 GAAAAATACATTTAATGGATCTCGGTTCCAATTTTCTATTATCAACATGAGCATACGCAG
1 GAAAAATACATTTAATGGATCTCGGTTCCAATTTTCTATTATCAACATGAGCATACGCAG
16090405 GA
1 GA
16090407 CACCCAAAAA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.31
Consensus pattern (60 bp):
GAAAAATACATTTAATGGATCTCGGTTCCAATTTTCTATTATCAACATGAGCATACGCAG
Found at i:16091919 original size:708 final size:708
Alignment explanation
Indices: 16090563--16091979 Score: 2834
Period size: 708 Copynumber: 2.0 Consensus size: 708
16090553 TTGGCATTTG
16090563 ACAACATACATCGAACCTTCTCCATGATCGTTTTATTCATTCGTTCTGTAACGCCATTTTGCTGT
1 ACAACATACATCGAACCTTCTCCATGATCGTTTTATTCATTCGTTCTGTAACGCCATTTTGCTGT
16090628 GGAGTATGGTGAACTGTCAAGTGTCTCACAATCCCTTCTGACTTACACAATCTATTAAACTCATC
66 GGAGTATGGTGAACTGTCAAGTGTCTCACAATCCCTTCTGACTTACACAATCTATTAAACTCATC
16090693 AGAATAGAACTCTAAGCCATTATCTGTGTGGAGGTATTTTATTTGTTTTCCCTTCTGTTTTTCAA
131 AGAATAGAACTCTAAGCCATTATCTGTGTGGAGGTATTTTATTTGTTTTCCCTTCTGTTTTTCAA
16090758 TCATAATTTTCCAAGACTTAAATGCAGAAAACACATTATTTTTCTGCTTCAAGAAGAACGCCCAA
196 TCATAATTTTCCAAGACTTAAATGCAGAAAACACATTATTTTTCTGCTTCAAGAAGAACGCCCAA
16090823 ACTTTTCTGGAAAAATCATCAATAAATGTTAGCATATAATTAGCTCTATCTCTCGAAGGCACTTT
261 ACTTTTCTGGAAAAATCATCAATAAATGTTAGCATATAATTAGCTCTATCTCTCGAAGGCACTTT
16090888 AAATGGCCCCCATAGATCAGAATGAATATACTCCAACGTTCCCTTCGTGTTAGGATTCCTCTGAT
326 AAATGGCCCCCATAGATCAGAATGAATATACTCCAACGTTCCCTTCGTGTTAGGATTCCTCTGAT
16090953 GAATCGAACTCTTTTTTGCTTCCTAAAAACACAGTGCTCACAAAAATTCAGTTTGCAAATTCCTT
391 GAATCGAACTCTTTTTTGCTTCCTAAAAACACAGTGCTCACAAAAATTCAGTTTGCAAATTCCTT
16091018 GCCCATCAAGAAGTCCTCTTTTGCTCAATTCTGCCATGTCATTCTCACTCATATGCCGTAGGCGC
456 GCCCATCAAGAAGTCCTCTTTTGCTCAATTCTGCCATGTCATTCTCACTCATATGCCGTAGGCGC
16091083 ATATGCCAAATTTTAGTAATATCATCATCTGACAAGGAAGAGGAAGCGACAACTGCATCACCAGT
521 ATATGCCAAATTTTAGTAATATCATCATCTGACAAGGAAGAGGAAGCGACAACTGCATCACCAGT
16091148 AACAGTAGAACCCTGCAAAACATATAACTTGGCAATCTTTCTCTGCTCTTTCATCACAACAAGGG
586 AACAGTAGAACCCTGCAAAACATATAACTTGGCAATCTTTCTCTGCTCTTTCATCACAACAAGGG
16091213 AACCTTTGGAAATATTTAAAACTCCACTTTCAGCTATGTATCTGTACCCTTTTGAATC
651 AACCTTTGGAAATATTTAAAACTCCACTTTCAGCTATGTATCTGTACCCTTTTGAATC
16091271 ACAACATACATCGAACCTTCTCCATGATCGTTTTATTCATTCGTTCTGTAACGCCATTTTGCTGT
1 ACAACATACATCGAACCTTCTCCATGATCGTTTTATTCATTCGTTCTGTAACGCCATTTTGCTGT
16091336 GGAGTATGGTGAACTGTCAAGTGTCTCACAATCCCTTCTGACTTACACAATCTATTAAACTCATC
66 GGAGTATGGTGAACTGTCAAGTGTCTCACAATCCCTTCTGACTTACACAATCTATTAAACTCATC
16091401 AGAATAGAACTCTAAGCCATTATCTGTGTGGAGGTATTTTATTTGTTTTCCCTTCTGTTTTTCAA
131 AGAATAGAACTCTAAGCCATTATCTGTGTGGAGGTATTTTATTTGTTTTCCCTTCTGTTTTTCAA
16091466 TCATAATTTTCCAAGACTTAAATGCAGAAAACACATTATTTTTCTGCTTCAAGAAGAACGCCCAA
196 TCATAATTTTCCAAGACTTAAATGCAGAAAACACATTATTTTTCTGCTTCAAGAAGAACGCCCAA
16091531 ACTTTTCTGGAAAAATCATCAATAAATGTTAGCATATAATTAGCTCTATCTCTCGAAGGCACTTT
261 ACTTTTCTGGAAAAATCATCAATAAATGTTAGCATATAATTAGCTCTATCTCTCGAAGGCACTTT
16091596 AAATGGCCCCCATAGATCAGAATGAATATACTCCAACGTTCCCTTCGTGTTAGGATTCCTCTGAT
326 AAATGGCCCCCATAGATCAGAATGAATATACTCCAACGTTCCCTTCGTGTTAGGATTCCTCTGAT
16091661 GAATCGAACTCTTTTTTGCTTCCTAAAAACACAGTGCTCACAAAAATTCAGTTTGCAAATTCCTT
391 GAATCGAACTCTTTTTTGCTTCCTAAAAACACAGTGCTCACAAAAATTCAGTTTGCAAATTCCTT
16091726 GCCCATCAAGAAGTCCTCTTTTGCTCAATTCTGCCATGTCATTCTCACTCATATGCCGTAGGCGC
456 GCCCATCAAGAAGTCCTCTTTTGCTCAATTCTGCCATGTCATTCTCACTCATATGCCGTAGGCGC
16091791 ATATGCCAAATTTTAGTAATATCATCATCTGACAAGGAAGAGGAAGCGACAACTGCATCACCAGT
521 ATATGCCAAATTTTAGTAATATCATCATCTGACAAGGAAGAGGAAGCGACAACTGCATCACCAGT
16091856 AACAGTAGAACCCTGCAAAACATATAACTTGGCAATCTTTCTCTGCTCTTTCATCACAACAAGGG
586 AACAGTAGAACCCTGCAAAACATATAACTTGGCAATCTTTCTCTGCTCTTTCATCACAACAAGGG
16091921 AACCTTTGGAAATATTTAAAACTCCACTTTCAGCTATGTATCTGTACCCTTTTGAATC
651 AACCTTTGGAAATATTTAAAACTCCACTTTCAGCTATGTATCTGTACCCTTTTGAATC
16091979 A
1 A
16091980 AATTTCTTTT
Statistics
Matches: 709, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
708 709 1.00
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (708 bp):
ACAACATACATCGAACCTTCTCCATGATCGTTTTATTCATTCGTTCTGTAACGCCATTTTGCTGT
GGAGTATGGTGAACTGTCAAGTGTCTCACAATCCCTTCTGACTTACACAATCTATTAAACTCATC
AGAATAGAACTCTAAGCCATTATCTGTGTGGAGGTATTTTATTTGTTTTCCCTTCTGTTTTTCAA
TCATAATTTTCCAAGACTTAAATGCAGAAAACACATTATTTTTCTGCTTCAAGAAGAACGCCCAA
ACTTTTCTGGAAAAATCATCAATAAATGTTAGCATATAATTAGCTCTATCTCTCGAAGGCACTTT
AAATGGCCCCCATAGATCAGAATGAATATACTCCAACGTTCCCTTCGTGTTAGGATTCCTCTGAT
GAATCGAACTCTTTTTTGCTTCCTAAAAACACAGTGCTCACAAAAATTCAGTTTGCAAATTCCTT
GCCCATCAAGAAGTCCTCTTTTGCTCAATTCTGCCATGTCATTCTCACTCATATGCCGTAGGCGC
ATATGCCAAATTTTAGTAATATCATCATCTGACAAGGAAGAGGAAGCGACAACTGCATCACCAGT
AACAGTAGAACCCTGCAAAACATATAACTTGGCAATCTTTCTCTGCTCTTTCATCACAACAAGGG
AACCTTTGGAAATATTTAAAACTCCACTTTCAGCTATGTATCTGTACCCTTTTGAATC
Found at i:16095517 original size:20 final size:21
Alignment explanation
Indices: 16095492--16095548 Score: 75
Period size: 20 Copynumber: 2.9 Consensus size: 21
16095482 GCTGATAGAA
16095492 CAGTCACCT-AAGTTTCATTT
1 CAGTCACCTCAAGTTTCATTT
*
16095512 CAGTCA-CTCAGGTTTCATTT
1 CAGTCACCTCAAGTTTCATTT
*
16095532 CAGTCA-CTCAACTTTCA
1 CAGTCACCTCAAGTTTCA
16095549 AAAAGTTACA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.37
Consensus pattern (21 bp):
CAGTCACCTCAAGTTTCATTT
Found at i:16095661 original size:21 final size:21
Alignment explanation
Indices: 16095635--16095675 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
16095625 TAACAGAACC
16095635 GCTGATGTGGCAAGTTAACTA
1 GCTGATGTGGCAAGTTAACTA
*
16095656 GCTGATGTGGCCAGTTAACT
1 GCTGATGTGGCAAGTTAACT
16095676 TGCCACATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (21 bp):
GCTGATGTGGCAAGTTAACTA
Found at i:16097020 original size:21 final size:21
Alignment explanation
Indices: 16096994--16097034 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
16096984 CAACATGGCA
*
16096994 AGTTAACTGGCCACGTCAGCT
1 AGTTAACTGGCCACATCAGCT
*
16097015 AGTTAACTTGCCACATCAGC
1 AGTTAACTGGCCACATCAGC
16097035 GGTTCTGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (21 bp):
AGTTAACTGGCCACATCAGCT
Found at i:16097134 original size:30 final size:31
Alignment explanation
Indices: 16097077--16097137 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
16097067 TCAGTCACTC
* *
16097077 TTTTGTCACTTTTTTGTAACGTTAGTGACTG
1 TTTTGTAACTTTTTTGTAAAGTTAGTGACTG
16097108 TTTTGTAAC-TTTTTG-AAAGTTGAGTGACTG
1 TTTTGTAACTTTTTTGTAAAGTT-AGTGACTG
16097138 AAATGAAACC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 5 0.19
30 14 0.52
31 8 0.30
ACGTcount: A:0.20, C:0.10, G:0.21, T:0.49
Consensus pattern (31 bp):
TTTTGTAACTTTTTTGTAAAGTTAGTGACTG
Found at i:16097176 original size:20 final size:20
Alignment explanation
Indices: 16097128--16097166 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
16097118 TTTTGAAAGT
16097128 TGAGTGACTGAAATGAAACC
1 TGAGTGACTGAAATGAAACC
16097148 TGAGTGACTGAAATGAAAC
1 TGAGTGACTGAAATGAAAC
16097167 TTAGGTGACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.13, G:0.26, T:0.21
Consensus pattern (20 bp):
TGAGTGACTGAAATGAAACC
Found at i:16099578 original size:29 final size:30
Alignment explanation
Indices: 16099528--16099585 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
16099518 GTGGTACATG
* * *
16099528 TATATTTATAAAAATGTTTAATGTGGTACC
1 TATATTTATAAAAATATCTAATGTAGTACC
*
16099558 TATATTT-TGAAAATATCTAATGTAGTAC
1 TATATTTATAAAAATATCTAATGTAGTAC
16099586 TAAATTATCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (30 bp):
TATATTTATAAAAATATCTAATGTAGTACC
Found at i:16103155 original size:31 final size:31
Alignment explanation
Indices: 16103120--16103178 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
16103110 ATTCATCTCG
16103120 AATAACTTAAAATG-CTTATTTAAATTGACTT
1 AATAAC-TAAAATGACTTATTTAAATTGACTT
* *
16103151 AATAACTCAAATGACTTATTTAACTTGA
1 AATAACTAAAATGACTTATTTAAATTGA
16103179 ATCACCTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 6 0.24
31 19 0.76
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.39
Consensus pattern (31 bp):
AATAACTAAAATGACTTATTTAAATTGACTT
Found at i:16104957 original size:6 final size:6
Alignment explanation
Indices: 16104948--16104981 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
16104938 ATTTAGGCTC
*
16104948 GATTTG GATTTG GATTTG GATTTG GATTCG GATT
1 GATTTG GATTTG GATTTG GATTTG GATTTG GATT
16104982 CAGATTCGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.03, G:0.32, T:0.47
Consensus pattern (6 bp):
GATTTG
Found at i:16104987 original size:18 final size:18
Alignment explanation
Indices: 16104948--16104994 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
16104938 ATTTAGGCTC
* **
16104948 GATTTGGATTTGGATTTG
1 GATTTGGATTCGGATTCA
16104966 GATTTGGATTCGGATTCA
1 GATTTGGATTCGGATTCA
*
16104984 GATTCGGATTC
1 GATTTGGATTC
16104995 TGCAAGTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.19, C:0.09, G:0.30, T:0.43
Consensus pattern (18 bp):
GATTTGGATTCGGATTCA
Found at i:16112820 original size:22 final size:23
Alignment explanation
Indices: 16112795--16112854 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
16112785 TGGACTGAAT
16112795 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
16112817 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
16112839 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
16112855 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:16112822 original size:4 final size:4
Alignment explanation
Indices: 16112804--16112837 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
16112794 TATAAAAATT
16112804 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
16112838 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:16114243 original size:23 final size:22
Alignment explanation
Indices: 16114191--16114243 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
16114181 TCCACGTCTT
*
16114191 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
16114213 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
16114236 TTTCTTTT
1 TTTCTTTT
16114244 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:16116616 original size:22 final size:23
Alignment explanation
Indices: 16116591--16116650 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
16116581 TGGACTGAAT
16116591 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
16116613 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
16116635 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
16116651 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:16116618 original size:4 final size:4
Alignment explanation
Indices: 16116600--16116633 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
16116590 TATAAAAATT
16116600 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
16116634 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:16116994 original size:34 final size:34
Alignment explanation
Indices: 16116951--16117018 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
16116941 TAGTCTTACT
16116951 AGAATATGGCTTTACAAGCCTATAAATAAACATA
1 AGAATATGGCTTTACAAGCCTATAAATAAACATA
16116985 AGAATATGGCTTTACAAGCCTATAAATAAACATA
1 AGAATATGGCTTTACAAGCCTATAAATAAACATA
16117019 GTCTATTCCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.47, C:0.15, G:0.12, T:0.26
Consensus pattern (34 bp):
AGAATATGGCTTTACAAGCCTATAAATAAACATA
Found at i:16126621 original size:123 final size:122
Alignment explanation
Indices: 16126204--16126660 Score: 621
Period size: 123 Copynumber: 3.7 Consensus size: 122
16126194 AGGAAAATCA
** * *
16126204 ACTCATATCACGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTAC
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTC-AAAATCAACTCATATTGC
* *
16126269 GAGAAGTGAGTTGAGCCTCGGGGCAGGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
65 GAGAAGTGAGTTGAGCCTAGGGGCACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
* *
16126327 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAATCAACTCATATTGCG
* * ** ** *
16126392 AGAGGTGAGTTGAGCCTCA-GGACACGCTGAGGTAATTTCAATTTCTGTTAT-TTTTCAAAAATC
66 AGAAGTGAGTTGAGCCT-AGGGGCACGCCAAGGT-ATTT---TTAGT-TTATGTTTT---AAATT
*
16126455 A
122 G
*
16126456 ACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTC-AAAATCAACTCATATTGC
16126521 GAGAAGTGAGTTGAGCCTAGGGGCACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
65 GAGAAGTGAGTTGAGCCTAGGGGCACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
* *
16126579 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTCAAAATCAACTCATATTGCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAATCAACTCATATTGCG
*
16126644 AGAGGTGAGTTGAGCCT
66 AGAAGTGAGTTGAGCCT
16126661 CAGGACACGC
Statistics
Matches: 291, Mismatches: 31, Indels: 25
0.84 0.09 0.07
Matches are distributed among these distances:
122 77 0.26
123 94 0.32
125 4 0.01
126 14 0.05
127 4 0.01
129 53 0.18
130 45 0.15
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.37
Consensus pattern (122 bp):
ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAATCAACTCATATTGCG
AGAAGTGAGTTGAGCCTAGGGGCACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
Found at i:16126642 original size:252 final size:251
Alignment explanation
Indices: 16126197--16126735 Score: 952
Period size: 252 Copynumber: 2.1 Consensus size: 251
16126187 CTTTCCAAGG
**
16126197 AAAATCAACTCATATCACGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTC
* *
16126262 ATATTACGAGAAGTGAGTTGAGCCTCGGGGCAGGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
66 ATATTACGAGAAGTGAGTTGAGCCTAGGGGCACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
*
16126327 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCT
131 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTCAAAATCAACTCATATTGCT
* ***
16126392 AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTATTTTTCA
196 AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT-GTTAAAA
16126449 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTC
*
16126514 ATATTGCGAGAAGTGAGTTGAGCCTAGGGGCACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
66 ATATTACGAGAAGTGAGTTGAGCCTAGGGGCACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
16126579 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTCAAAATCAACTCATATTGCT
131 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTCAAAATCAACTCATATTGCT
*
16126644 AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTCTGTTGTTAAAA
196 AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAA
**
16126700 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
16126736 CAGGACACGC
Statistics
Matches: 274, Mismatches: 13, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
251 37 0.14
252 237 0.86
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (251 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTC
ATATTACGAGAAGTGAGTTGAGCCTAGGGGCACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTCAAAATCAACTCATATTGCT
AGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTTAAAA
Found at i:16126682 original size:123 final size:123
Alignment explanation
Indices: 16126204--16126698 Score: 638
Period size: 122 Copynumber: 4.0 Consensus size: 123
16126194 AGGAAAATCA
** * *
16126204 ACTCATATCACGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTAC
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGC
* * *
16126269 GAGAAGTGAGTTGAGCCTCGGGGCAGGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
66 GAGAAGTGAGTTGAGCCTCAGGACACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
*
16126327 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC-AAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGC
* * ** ** *
16126391 TAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTAT-TTTTCAAAAATC
66 GAGAAGTGAGTTGAGCCTCAGGACACGCCAAGGT-ATTT---TTAGT-TTATGTTTT---AAATT
*
16126455 A
123 G
*
16126456 ACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGC
*
16126521 GAGAAGTGAGTTGAGCCT-AGGGGCACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
66 GAGAAGTGAGTTGAGCCTCA-GGACACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
*
16126579 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTATGTTTTTC-AAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGC
* * ** * * *
16126643 TAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATTTCTGTTGTTAAA
66 GAGAAGTGAGTTGAGCCTCAGGACACGCCAAGGTATTTTTAGTTTATGTT-TTAAA
16126699 AAAAATCAAC
Statistics
Matches: 322, Mismatches: 37, Indels: 26
0.84 0.10 0.07
Matches are distributed among these distances:
122 102 0.32
123 100 0.31
125 4 0.01
126 14 0.04
127 4 0.01
129 53 0.16
130 45 0.14
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.37
Consensus pattern (123 bp):
ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGC
GAGAAGTGAGTTGAGCCTCAGGACACGCCAAGGTATTTTTAGTTTATGTTTTAAATTG
Found at i:16126818 original size:72 final size:72
Alignment explanation
Indices: 16126611--16127630 Score: 1642
Period size: 72 Copynumber: 14.1 Consensus size: 72
16126601 TAAGCCTTTT
* * ** * *
16126611 AATTTATGTTTTTCAAAA-TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
16126675 GTAATTTT
65 GTAATTTC
* * * *
16126683 AATTTCTGTTGTTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTG
1 AATTTCTGTT-TT--CAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
*
16126748 ACGTAATTTC
63 AGGTAATTTC
* * *
16126758 AATTTCTGTTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
16126823 TATTTTC
66 TAATTTC
*
16126830 AATTTCTGCTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
16126895 TAATTTC
66 TAATTTC
16126902 AATCTT-TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AAT-TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
16126966 GTAATTTC
65 GTAATTTC
16126974 AATCTT-TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AAT-TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
16127038 GTAATTTC
65 GTAATTTC
16127046 AATCTT-TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AAT-TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
16127110 GTAATTTC
65 GTAATTTC
16127118 AATCTT-TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AAT-TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
16127182 GTAATTTC
65 GTAATTTC
16127190 AATCTT-TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AAT-TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
16127254 GTAATTTC
65 GTAATTTC
16127262 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
16127327 TAATTTC
66 TAATTTC
16127334 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
16127399 TATTTTC
66 TAATTTC
16127406 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
16127471 TAATTTC
66 TAATTTC
*
16127478 AATCTT-TGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAG
1 AAT-TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
*
16127542 GTATTTTC
65 GTAATTTC
* * * * *
16127550 AATTTCTGCTTTTCAAAACTT-AACTCATATTGCGAGAGATGAGTTAAGTCTCAAGGCACGCTGA
1 AATTTCTG-TTTTCAAAA-TTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
*
16127614 GGTATTTTC
64 GGTAATTTC
16127623 AATTTCTG
1 AATTTCTG
16127631 CTTTACTAAT
Statistics
Matches: 910, Mismatches: 28, Indels: 19
0.95 0.03 0.02
Matches are distributed among these distances:
71 6 0.01
72 770 0.85
73 67 0.07
74 8 0.01
75 59 0.06
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (72 bp):
AATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TAATTTC
Found at i:16127709 original size:87 final size:87
Alignment explanation
Indices: 16127553--16127717 Score: 219
Period size: 87 Copynumber: 1.9 Consensus size: 87
16127543 TATTTTCAAT
* * *
16127553 TTCTGCTTTTCAAAACTTAACTCATATTGCGAGAGATGAGTTAAGTCTCAAGGCACGCTGAGGTA
1 TTCTACTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTAAGTCTCAAGGCACGCTGAGGTA
*
16127618 TTTTCAATTTCTGCTTTACTAA
66 TTTTCAAATTCTGCTTTACTAA
* *
16127640 TTCTACTTTTC-AAA-TCAACTCATATTGCAAGAGGTGAGTTGAGTCTC-AGGCCACACGCTGAG
1 TTCTACTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTAAGTCTCAAGG---CACGCTGAG
*
16127702 GTCTTTTCAAATTCTG
63 GTATTTTCAAATTCTG
16127718 TTTTTAATTT
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
84 3 0.04
85 29 0.43
86 3 0.04
87 33 0.49
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (87 bp):
TTCTACTTTTCAAAACTCAACTCATATTGCAAGAGATGAGTTAAGTCTCAAGGCACGCTGAGGTA
TTTTCAAATTCTGCTTTACTAA
Found at i:16127735 original size:14 final size:14
Alignment explanation
Indices: 16127713--16127745 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
16127703 TCTTTTCAAA
16127713 TTCTG-TTTTTAAT
1 TTCTGTTTTTTAAT
16127726 TTCTGTTTTTTAAT
1 TTCTGTTTTTTAAT
16127740 TTCTGT
1 TTCTGT
16127746 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.70
Consensus pattern (14 bp):
TTCTGTTTTTTAAT
Found at i:16127907 original size:54 final size:54
Alignment explanation
Indices: 16127832--16128147 Score: 484
Period size: 54 Copynumber: 5.9 Consensus size: 54
16127822 TACTTTTCAG
16127832 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAA
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAA
*
16127886 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAA
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAA
*
16127940 TTTCTGTTTTTAAAAAATCAAC-CATATTGCGAGAGATGAGTTGAGCCTTTTAA
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAA
* * *
16127993 TTTCTATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT--
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAA
* *
16128043 TTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCAA
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTT--AA
*
16128099 ATTCTG-TTTTCAAAAATCAACTCATATTGCGAGA-AGTGAGTTGAGCCTT
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGA-TGAGTTGAGCCTT
16128148 GGCTCACGTG
Statistics
Matches: 243, Mismatches: 11, Indels: 15
0.90 0.04 0.06
Matches are distributed among these distances:
50 47 0.19
52 4 0.02
53 49 0.20
54 98 0.40
55 41 0.17
56 4 0.02
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (54 bp):
TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAA
Found at i:16128019 original size:107 final size:105
Alignment explanation
Indices: 16127832--16128147 Score: 494
Period size: 107 Copynumber: 3.0 Consensus size: 105
16127822 TACTTTTCAG
16127832 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAATTTCTGTTTTT
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAATTTCT-TTTTT
16127897 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
65 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
*
16127938 AATTTCTGTTTTTAAAAAATCAAC-CATATTGCGAGAGATGAGTTGAGCCTTTTAATTTCTATTT
1 --TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAATTTCT-TTT
*
16128002 TTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCC--TT
63 TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
* * * *
16128043 TTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTGCAAATTCTGTTT
1 TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTT--AATTTCTTTTT
*
16128108 TCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTT
64 TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
16128148 GGCTCACGTG
Statistics
Matches: 193, Mismatches: 10, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
103 20 0.10
104 28 0.15
105 41 0.21
106 6 0.03
107 77 0.40
108 21 0.11
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (105 bp):
TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTTTAATTTCTTTTTTC
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTT
Found at i:16128415 original size:15 final size:16
Alignment explanation
Indices: 16128389--16128425 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
16128379 TTTAATTTTC
16128389 AAAATTTCAAAAAAAA
1 AAAATTTCAAAAAAAA
*
16128405 AAAATTT-AAAAAATA
1 AAAATTTCAAAAAAAA
16128420 AAAATT
1 AAAATT
16128426 GCATTTTGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAATTTCAAAAAAAA
Found at i:16128461 original size:30 final size:30
Alignment explanation
Indices: 16128421--16128522 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
16128411 TAAAAAATAA
* *
16128421 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCCTAAAC-TTTCATT
* *
16128451 AAATTTCATTTTGACCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
* *
16128481 AAATTTCACTTAGACCCCTAAACTTTCATT
1 AAATTTCATTTTGACCCCTAAACTTTCATT
16128511 AAATTTCATTTT
1 AAATTTCATTTT
16128523 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 4 0.06
30 58 0.94
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTCATT
Found at i:16129372 original size:18 final size:18
Alignment explanation
Indices: 16129328--16129847 Score: 258
Period size: 17 Copynumber: 29.8 Consensus size: 18
16129318 TCAATAATCC
*
16129328 TCGTGCTTTT-AAAAATTC
1 TCGTG-TTTTCAAAAATTT
* *
16129346 TCATG-TTTCAAAAATCT
1 TCGTGTTTTCAAAAATTT
*
16129363 TCGTGTTTTC-AAAATTC
1 TCGTGTTTTCAAAAATTT
*
16129380 TAGTG-TTTCAAAAATTT
1 TCGTGTTTTCAAAAATTT
*
16129397 TCTTGTTTTCAGAAAAAATTT
1 TCGTGTTTTC---AAAAATTT
*
16129418 TCGTGTTTT-ATAAATTT
1 TCGTGTTTTCAAAAATTT
* * **
16129435 CCGTATTTTCAAAAA-AA
1 TCGTGTTTTCAAAAATTT
*
16129452 TCATGTCTTTCAAAAATTT
1 TCGTGT-TTTCAAAAATTT
**
16129471 TCGTGTTTTCAAAAAAAATGA
1 TCGTGTTTTC---AAAAATTT
*
16129492 CCGTG-TTTCAAAAATTT
1 TCGTGTTTTCAAAAATTT
* *** *
16129509 CCGTGTTAAAAAAAAATCT
1 TCGTGTT-TTCAAAAATTT
*
16129528 TCGTATTTTCAAAAAATTT
1 TCGTGTTTTC-AAAAATTT
*
16129547 TCGTG-TTTCAAAAATCT
1 TCGTGTTTTCAAAAATTT
16129564 TCGTGTTTTCAAAAA-TT
1 TCGTGTTTTCAAAAATTT
*
16129581 TCG-GTGTTTCAAAGATTT
1 TCGTGT-TTTCAAAAATTT
*
16129599 TCGTGTTTTCAAAAA-CT
1 TCGTGTTTTCAAAAATTT
* ***
16129616 CCGGTGATTTT-AAAAAAAA
1 TC-GTG-TTTTCAAAAATTT
*
16129635 TCGT-TTTCTAAAAAATTT
1 TCGTGTTT-TCAAAAATTT
*
16129653 CCGTG-TTTCAAAAATTT
1 TCGTGTTTTCAAAAATTT
16129670 TCGTGTTTT-AAAAATTT
1 TCGTGTTTTCAAAAATTT
*
16129687 TCGTGTTTT-AAAAATTC
1 TCGTGTTTTCAAAAATTT
*
16129704 TCGTATTTT---AAATTT
1 TCGTGTTTTCAAAAATTT
*** **
16129719 T--T-TTAAGAAAAAAAT
1 TCGTGTTTTCAAAAATTT
* *
16129734 T-GTG-TTTCAAAAAATG
1 TCGTGTTTTCAAAAATTT
* *
16129750 TCTTGTTTGT--AAAATTC
1 TCGTGTTT-TCAAAAATTT
* *
16129767 TCGTG-TTTCAAAAAATG
1 TCGTGTTTTCAAAAATTT
16129784 TCGTGTTTT-AAAAATTT
1 TCGTGTTTTCAAAAATTT
**
16129801 TCGTGTTTT-TGAAATTT
1 TCGTGTTTTCAAAAATTT
* *
16129818 CCGTG-TTT-AAAAATTC
1 TCGTGTTTTCAAAAATTT
16129834 TCGTGTTTT-AAAAA
1 TCGTGTTTTCAAAAA
16129848 AAACTTTCAT
Statistics
Matches: 382, Mismatches: 81, Indels: 79
0.70 0.15 0.15
Matches are distributed among these distances:
12 2 0.01
13 1 0.00
15 12 0.03
16 35 0.09
17 182 0.48
18 84 0.22
19 36 0.09
20 4 0.01
21 26 0.07
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.44
Consensus pattern (18 bp):
TCGTGTTTTCAAAAATTT
Found at i:16129390 original size:16 final size:16
Alignment explanation
Indices: 16129339--16129392 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
16129329 CGTGCTTTTA
16129339 AAAATTCTCA-TGTTTC
1 AAAATTCT-AGTGTTTC
* *
16129355 AAAAATCTTCGTGTTTTC
1 AAAATTC-TAGTG-TTTC
16129373 AAAATTCTAGTGTTTC
1 AAAATTCTAGTGTTTC
16129389 AAAA
1 AAAA
16129393 ATTTTCTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 14 0.45
17 7 0.23
18 10 0.32
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
AAAATTCTAGTGTTTC
Found at i:16129469 original size:36 final size:38
Alignment explanation
Indices: 16129429--16129512 Score: 109
Period size: 38 Copynumber: 2.3 Consensus size: 38
16129419 CGTGTTTTAT
*
16129429 AAATTTCCGTATTTTC-AAAAAAATCA-TGTCTTTCAA
1 AAATTTCCGTATTTTCAAAAAAAATCACCGTCTTTCAA
* * * *
16129465 AAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAA
1 AAATTTCCGTATTTTCAAAAAAAATCACCGTCTTTCAA
16129503 AAATTTCCGT
1 AAATTTCCGT
16129513 GTTAAAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
36 14 0.35
37 9 0.22
38 17 0.43
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (38 bp):
AAATTTCCGTATTTTCAAAAAAAATCACCGTCTTTCAA
Found at i:16129480 original size:74 final size:74
Alignment explanation
Indices: 16129385--16129588 Score: 211
Period size: 74 Copynumber: 2.8 Consensus size: 74
16129375 AATTCTAGTG
* * * * **
16129385 TTTCAAAAATTTTCTTGTTTTCAGAAAAAATTTTCGTGTTTTATAAATTTCCGTATTTTCAAAAA
1 TTTCAAAAATTTTCGTGTTTTCA-AAAAAATCTTCGTGTTTTAAAAATTTCCGT-GTTAAAAAAA
16129450 AATCAT-GT-C
64 AATCATCGTAC
*** *
16129459 TTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTGTTTCAAAAATTTCCGTGTTAAAAAAAA
1 TTTCAAAAATTTTCGTGTTTTC-AAAAAAATCTTCGTGTTTTAAAAATTTCCGTGTTAAAAAAAA
* *
16129524 ATCTTCGTAT
65 ATCATCGTAC
*
16129534 TTTCAAAAAATTTTCGTG-TTTC--AAAAATCTTCGTGTTTTCAAAAATTTCGGTGTT
1 TTTC-AAAAATTTTCGTGTTTTCAAAAAAATCTTCGTGTTTT-AAAAATTTCCGTGTT
16129589 TCAAAGATTT
Statistics
Matches: 109, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
72 13 0.12
73 26 0.24
74 48 0.44
75 9 0.08
76 13 0.12
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (74 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAAAATCTTCGTGTTTTAAAAATTTCCGTGTTAAAAAAAAA
TCATCGTAC
Found at i:16129588 original size:35 final size:34
Alignment explanation
Indices: 16129351--16129701 Score: 185
Period size: 35 Copynumber: 9.8 Consensus size: 34
16129341 AATTCTCATG
* *
16129351 TTTCAAAAATCTTCGTGTTTTCAAAATTC-TAGTG-
1 TTTCAAAAAT-TTCGTG-TTTCAAAAATCTTCGTGT
* *
16129385 TTTCAAAAATTTTCTTGTTTTCAGAAAAAATTTTCGTGT
1 TTTCAAAAA-TTTCGTG-TTTC---AAAAATCTTCGTGT
* * ** *
16129424 TTT-ATAAATTTCCGTATTTTCAAAAA-AATCATGT
1 TTTCAAAAATTT-CGT-GTTTCAAAAATCTTCGTGT
***
16129458 CTTTCAAAAATTTTCGTGTTTTCAAAAAAAATGACCGTG-
1 -TTTCAAAAA-TTTCGTG-TTTC---AAAAATCTTCGTGT
** *
16129497 TTTCAAAAATTTCCGTGTTAAAAAAAAATCTTCGTAT
1 TTTCAAAAATTT-CGTGTT--TCAAAAATCTTCGTGT
16129534 TTTCAAAAAATTTTCGTGTTTCAAAAATCTTCGTGT
1 TTTC-AAAAA-TTTCGTGTTTCAAAAATCTTCGTGT
* *
16129570 TTTCAAAAATTTCGGTGTTTCAAAGATTTTCGTGT
1 TTTCAAAAATTTC-GTGTTTCAAAAATCTTCGTGT
* * * ***
16129605 TTTCAAAAACTCCGGTGATTTTAAAAAAAATCGT-T
1 TTTCAAAAATTTC-GTG-TTTCAAAAATCTTCGTGT
* *
16129640 TTCTAAAAAATTTCCGTGTTTCAAAAATTTTCGTGT
1 TT-TCAAAAATTT-CGTGTTTCAAAAATCTTCGTGT
*
16129676 TTT-AAAAATTTTCGTGTTTTAAAAAT
1 TTTCAAAAA-TTTCGTGTTTCAAAAAT
16129702 TCTCGTATTT
Statistics
Matches: 248, Mismatches: 41, Indels: 56
0.72 0.12 0.16
Matches are distributed among these distances:
34 46 0.19
35 67 0.27
36 61 0.25
37 21 0.08
38 38 0.15
39 11 0.04
40 4 0.02
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.43
Consensus pattern (34 bp):
TTTCAAAAATTTCGTGTTTCAAAAATCTTCGTGT
Found at i:16129886 original size:20 final size:20
Alignment explanation
Indices: 16129826--16129878 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
16129816 TTCCGTGTTT
16129826 AAAAATTCTCGTGTTTTAAAA
1 AAAAATT-TCGTGTTTTAAAA
* * *
16129847 AAAACTTTCATTTTTTAAAA
1 AAAAATTTCGTGTTTTAAAA
16129867 AAAAATTTCGTG
1 AAAAATTTCGTG
16129879 CTTCAAAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 20 0.77
21 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (20 bp):
AAAAATTTCGTGTTTTAAAA
Found at i:16134083 original size:25 final size:24
Alignment explanation
Indices: 16134037--16134094 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 24
16134027 TAAAACCTAG
16134037 TTAAAT-AAAAAATTATAATAATA
1 TTAAATAAAAAAATTATAATAATA
* *
16134060 TTAAATAAAAATAATTATATTAATG
1 TTAAATAAAAA-AATTATAATAATA
16134085 TTAAATAAAA
1 TTAAATAAAA
16134095 TAAAAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 6 0.19
24 4 0.13
25 21 0.68
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (24 bp):
TTAAATAAAAAAATTATAATAATA
Found at i:16134104 original size:25 final size:26
Alignment explanation
Indices: 16134039--16134104 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 26
16134029 AAACCTAGTT
16134039 AAATAAAAAATTATAATAATATTAAAT-
1 AAATAAAAAA-TAT-ATAATATTAAATA
* * *
16134066 AAA-AATAATTATATTAATGTTAAATA
1 AAATAAAAAATATA-TAATATTAAATA
16134092 AAATAAAAAATAT
1 AAATAAAAAATAT
16134105 CCCTCCCCTC
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
24 1 0.03
25 13 0.42
26 7 0.23
27 10 0.32
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (26 bp):
AAATAAAAAATATATAATATTAAATA
Found at i:16134449 original size:23 final size:23
Alignment explanation
Indices: 16134423--16134479 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
16134413 AATGACTATA
16134423 TAAAAAAATAAAAAATTAAATA-T
1 TAAAAAAATAAAAAA-TAAATATT
* * *
16134446 TAAAATAATATAATATAAATATT
1 TAAAAAAATAAAAAATAAATATT
*
16134469 TTAAAAAATAA
1 TAAAAAAATAA
16134480 TATGGACGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
22 6 0.22
23 21 0.78
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (23 bp):
TAAAAAAATAAAAAATAAATATT
Found at i:16138736 original size:34 final size:36
Alignment explanation
Indices: 16138669--16138736 Score: 88
Period size: 34 Copynumber: 1.9 Consensus size: 36
16138659 TTTCATTAAA
* *
16138669 TAAAAAAATTTTAAAATATAATAAATCAAATACATT
1 TAAAAAAATATTAAAATATAAGAAATCAAATACATT
16138705 TAAAACAAATATT-AAA-ATAAGAAA-CAAATACA
1 TAAAA-AAATATTAAAATATAAGAAATCAAATACA
16138737 AAATGATACT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 8 0.28
35 7 0.24
36 8 0.28
37 6 0.21
ACGTcount: A:0.65, C:0.07, G:0.01, T:0.26
Consensus pattern (36 bp):
TAAAAAAATATTAAAATATAAGAAATCAAATACATT
Found at i:16140036 original size:16 final size:16
Alignment explanation
Indices: 16140015--16140047 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
16140005 AAGTCATTGA
16140015 TTGTGCAAGATTGCTT
1 TTGTGCAAGATTGCTT
16140031 TTGTGCAAGATTGCTT
1 TTGTGCAAGATTGCTT
16140047 T
1 T
16140048 ATTGTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.24, T:0.45
Consensus pattern (16 bp):
TTGTGCAAGATTGCTT
Found at i:16148248 original size:229 final size:229
Alignment explanation
Indices: 16147847--16148306 Score: 877
Period size: 229 Copynumber: 2.0 Consensus size: 229
16147837 TCGAATGCGC
16147847 ACACGGCTTAAGACACGGGCGTGTGACCCCTGTACATAAGAAAAATTTTGAAATTTCACAAAAAA
1 ACACGGCTTAAGACACGGGCGTGTGACCCCTGTACATAAGAAAAATTTTGAAATTTCACAAAAAA
16147912 TCCCCTGAGTTTCCGATATAGTCCCGACCTGTTTCTAGTACTTAAATGGGGCCTCGAGGGTCCAT
66 TCCCCTGAGTTTCCGATATAGTCCCGACCTGTTTCTAGTACTTAAATGGGGCCTCGAGGGTCCAT
*
16147977 ATAAGGGACAATACGATTAAATATGATTGGTTTCGAATATGAATAATAAATGACATGAATTAACT
131 ATAAGGGAAAATACGATTAAATATGATTGGTTTCGAATATGAATAATAAATGACATGAATTAACT
16148042 GTAATT-TTTCTGTAAATTCTAGTAATGCTCTGTA
196 GTAATTGTTT-TGTAAATTCTAGTAATGCTCTGTA
16148076 ACACGGCTTAAGACACGGGCGTGTGACCCCTGTACATAAGAAAAATTTTGAAATTTCACAAAAAA
1 ACACGGCTTAAGACACGGGCGTGTGACCCCTGTACATAAGAAAAATTTTGAAATTTCACAAAAAA
* *
16148141 TTCTCTGAGTTTCCGATATAGTCCCGACCTGTTTCTAGTACTTAAATGGGGCCTCGAGGGTCCAT
66 TCCCCTGAGTTTCCGATATAGTCCCGACCTGTTTCTAGTACTTAAATGGGGCCTCGAGGGTCCAT
16148206 ATAAGGGAAAATACGATTAAATATGATTGGTTTCGAATATGAATAATAAATGACATGAATTAACT
131 ATAAGGGAAAATACGATTAAATATGATTGGTTTCGAATATGAATAATAAATGACATGAATTAACT
16148271 GTAATTGTTTTGTAAATTCTAGTAATGCTCTGTA
196 GTAATTGTTTTGTAAATTCTAGTAATGCTCTGTA
16148305 AC
1 AC
16148307 TCGGTTCCGA
Statistics
Matches: 227, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
229 224 0.99
230 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (229 bp):
ACACGGCTTAAGACACGGGCGTGTGACCCCTGTACATAAGAAAAATTTTGAAATTTCACAAAAAA
TCCCCTGAGTTTCCGATATAGTCCCGACCTGTTTCTAGTACTTAAATGGGGCCTCGAGGGTCCAT
ATAAGGGAAAATACGATTAAATATGATTGGTTTCGAATATGAATAATAAATGACATGAATTAACT
GTAATTGTTTTGTAAATTCTAGTAATGCTCTGTA
Found at i:16152151 original size:45 final size:45
Alignment explanation
Indices: 16152087--16152193 Score: 126
Period size: 45 Copynumber: 2.4 Consensus size: 45
16152077 GTAGCAGTAG
* * * * *
16152087 CAGTAACAGTAACATTATTCAACATACAAAGTG-CTGAATCTGTAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTC-GAATATGGAA
*
16152132 CAGTAACGGTAACAGTATTCGACACACAAAGTGTCGAATATGGAA
1 CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATATGGAA
* *
16152177 CAATAACGGTAATAGTA
1 CAGTAACGGTAACAGTA
16152194 ACAGTAGTCG
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 52 0.98
46 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (45 bp):
CAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATATGGAA
Found at i:16153586 original size:20 final size:20
Alignment explanation
Indices: 16153563--16153619 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
16153553 TTAATTTATT
16153563 TTTAATAATAATAATCATAA
1 TTTAATAATAATAATCATAA
*
16153583 TTTAATAAT-ATAAATTATAA
1 TTTAATAATAAT-AATCATAA
16153603 TTTAATAGAATAATAAT
1 TTTAAT--AATAATAAT
16153620 AAATAATAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 2 0.06
20 22 0.69
22 6 0.19
23 2 0.06
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (20 bp):
TTTAATAATAATAATCATAA
Found at i:16153677 original size:39 final size:38
Alignment explanation
Indices: 16153569--16153680 Score: 108
Period size: 39 Copynumber: 3.0 Consensus size: 38
16153559 TATTTTTAAT
* *
16153569 AATAATAATCATAATTTAATAATATAAATTATA-AT-TT-
1 AATAAAAATAATAA-TTAATAAT-TAAATTATATATATTA
* * *
16153606 AAT-AGAATAATAATAAATAA-TAAATATCTATATACTTA
1 AATAAAAATAATAATTAATAATTAAAT-TATATATA-TTA
16153644 AATAAAAATAATAATTAATAATTAAATTATATATATT
1 AATAAAAATAATAATTAATAATTAAATTATATATATT
16153681 TACATAATTA
Statistics
Matches: 61, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
33 5 0.08
34 3 0.05
35 8 0.13
36 8 0.13
37 5 0.08
38 5 0.08
39 22 0.36
40 5 0.08
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (38 bp):
AATAAAAATAATAATTAATAATTAAATTATATATATTA
Found at i:16153693 original size:43 final size:39
Alignment explanation
Indices: 16153611--16153693 Score: 94
Period size: 39 Copynumber: 2.0 Consensus size: 39
16153601 AATTTAATAG
* *
16153611 AATAATAATAAATAATAAATATCTATATACTTAAATAAA
1 AATAATAATAAATAATAAATATATATATACATAAATAAA
* *
16153650 AATAATAATTAATAATTAAATTATATATATTTACATAATTAAA
1 AATAATAATAAATAA-TAAA-TATATATA--TACATAAATAAA
16153693 A
1 A
16153694 TCTAAAAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
39 14 0.39
40 4 0.11
41 7 0.19
43 11 0.31
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (39 bp):
AATAATAATAAATAATAAATATATATATACATAAATAAA
Found at i:16166524 original size:25 final size:25
Alignment explanation
Indices: 16166479--16166526 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
16166469 ATGTTTATAC
*
16166479 AACTAACATTAAAGATGTTATAAAA
1 AACTAACATTAAAAATGTTATAAAA
16166504 AACTAACATTAAAAAAT-TTATAA
1 AACTAACATT-AAAAATGTTATAA
16166527 GATATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.29
Consensus pattern (25 bp):
AACTAACATTAAAAATGTTATAAAA
Found at i:16172059 original size:30 final size:30
Alignment explanation
Indices: 16172010--16172082 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 30
16172000 AGTTTCATTT
*
16172010 CAGTCACTTAACTTTC-AAAAAGTAACAAAA
1 CAGTCAC-TAACTTACAAAAAAGTAACAAAA
* *
16172040 CGGTCACTAACGTTACAAAAAAGTGACAAAA
1 CAGTCACTAAC-TTACAAAAAAGTAACAAAA
16172071 CAGTCACTAACT
1 CAGTCACTAACT
16172083 AACAGTTACC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 4 0.11
30 10 0.27
31 23 0.62
ACGTcount: A:0.47, C:0.22, G:0.11, T:0.21
Consensus pattern (30 bp):
CAGTCACTAACTTACAAAAAAGTAACAAAA
Found at i:16172619 original size:30 final size:30
Alignment explanation
Indices: 16172585--16172647 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
16172575 AACTAGGGAT
16172585 ATTTTGATTTCAAATTT-AATTTCGATTTTG
1 ATTTTGATTTC-AATTTCAATTTCGATTTTG
* * *
16172615 ATTTTGCTTTCGATTTCTATTTCGATTTTG
1 ATTTTGATTTCAATTTCAATTTCGATTTTG
16172645 ATT
1 ATT
16172648 ACAATTTTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 4 0.14
30 25 0.86
ACGTcount: A:0.21, C:0.10, G:0.11, T:0.59
Consensus pattern (30 bp):
ATTTTGATTTCAATTTCAATTTCGATTTTG
Found at i:16172755 original size:18 final size:17
Alignment explanation
Indices: 16172723--16172756 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16172713 CTAGGATTAG
*
16172723 AATTTGATTTTGATTTT
1 AATTTGATTTCGATTTT
16172740 AATTTAGATTTCGATTT
1 AATTT-GATTTCGATTT
16172757 AGGGTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.26, C:0.03, G:0.12, T:0.59
Consensus pattern (17 bp):
AATTTGATTTCGATTTT
Found at i:16172965 original size:64 final size:64
Alignment explanation
Indices: 16172895--16173158 Score: 379
Period size: 64 Copynumber: 4.2 Consensus size: 64
16172885 GATTTTGATG
* *
16172895 TGTTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTGTATCTGCTAT
1 TGTTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCAT
*
16172959 TGTTTGTATCTGTCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCAT
1 TGTTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCAT
* * * * *
16173023 TGCTTGTATCTGTCATTGTATGAATGTCATTATCAAATTGATGTTTATTGTGTATATCTGCCAT
1 TGTTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCAT
** * * * * *
16173087 TGTTTGTATCTGCCATTAAAT-TAT-ACATTATTAAACTGATGTTTATTGTGTATATCTGTCAT
1 TGTTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCAT
16173149 TGTTTGTATC
1 TGTTTGTATC
16173159 CAGGCTCCTA
Statistics
Matches: 184, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 44 0.24
63 2 0.01
64 138 0.75
ACGTcount: A:0.23, C:0.14, G:0.16, T:0.47
Consensus pattern (64 bp):
TGTTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATCTTTATTGTGTATATCTGCCAT
Found at i:16172977 original size:16 final size:16
Alignment explanation
Indices: 16172940--16172970 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
16172930 AACTGATCTT
16172940 TATTGTGTGTATCTGC
1 TATTGTGTGTATCTGC
*
16172956 TATTGTTTGTATCTG
1 TATTGTGTGTATCTG
16172971 TCATTGTATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.10, G:0.23, T:0.55
Consensus pattern (16 bp):
TATTGTGTGTATCTGC
Found at i:16174878 original size:43 final size:43
Alignment explanation
Indices: 16174787--16174964 Score: 265
Period size: 43 Copynumber: 4.2 Consensus size: 43
16174777 TTGCTGATCA
* *
16174787 CATGCAGTGATTGTTGGAAAGCTATTGACT-TTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
* * *
16174829 TATGCAATGATTATTGGAAAGTTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
16174872 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
* *
16174915 CATGCAATGATTGTTGG--TG-TGTTGCCTATTTTTTAATATG
1 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
16174955 CATGCAATGA
1 CATGCAATGA
16174965 GTTATTTCTA
Statistics
Matches: 125, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
40 30 0.24
41 1 0.01
42 25 0.20
43 69 0.55
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (43 bp):
CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATG
Found at i:16174962 original size:83 final size:84
Alignment explanation
Indices: 16174787--16174964 Score: 270
Period size: 83 Copynumber: 2.1 Consensus size: 84
16174777 TTGCTGATCA
* *
16174787 CATGCAGTGATTGTTGGAAAGCTATTGACTTTTTTTAATATGTATGCAATGATTATTGGAAAGTT
1 CATGCAATGATTGTTGGAAAGCTATTGACTTTTTTTAATATGCATGCAATGATTATTGG-AAGTT
16174852 GTTGACTATTTTTTAATATG
65 GTTGACTATTTTTTAATATG
* * *
16174872 CATGCAATGATTGTTGGAAAGCTGTTGACTATTTTTTAATATGCATGCAATGATTGTTGG-TG-T
1 CATGCAATGATTGTTGGAAAGCTATTGACT-TTTTTTAATATGCATGCAATGATTATTGGAAGTT
*
16174935 GTTGCCTATTTTTTAATATG
65 GTTGACTATTTTTTAATATG
16174955 CATGCAATGA
1 CATGCAATGA
16174965 GTTATTTCTA
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
83 30 0.35
84 1 0.01
85 28 0.33
86 27 0.31
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.43
Consensus pattern (84 bp):
CATGCAATGATTGTTGGAAAGCTATTGACTTTTTTTAATATGCATGCAATGATTATTGGAAGTTG
TTGACTATTTTTTAATATG
Found at i:16175676 original size:21 final size:21
Alignment explanation
Indices: 16175631--16175676 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
16175621 CCGAACCCAG
* *
16175631 CAAGAGGATACCCCAAGTCAG
1 CAAGAGGATACCCCAACTCAA
* *
16175652 CAAGAGGGTACCTCAACTCAA
1 CAAGAGGATACCCCAACTCAA
16175673 CAAG
1 CAAG
16175677 GTGCCCCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.28, G:0.22, T:0.11
Consensus pattern (21 bp):
CAAGAGGATACCCCAACTCAA
Found at i:16176196 original size:56 final size:56
Alignment explanation
Indices: 16176105--16176216 Score: 181
Period size: 56 Copynumber: 2.0 Consensus size: 56
16176095 TTATCATGCT
* *
16176105 ATTTGTTATCCAACTGTTATCTTTTCTAACTAGCAGCCATGTATACCAACTGTTAA
1 ATTTGTTATCCAACTGTTATCTTTTCTAACCAGCAGCCATGTATACCAAATGTTAA
*
16176161 ATTTGTATAT-CAATTGTTATCTTTTCTAACCAGCAGCCATGTATACCAAATGTTAA
1 ATTTGT-TATCCAACTGTTATCTTTTCTAACCAGCAGCCATGTATACCAAATGTTAA
16176217 GCAATTTGTA
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
56 49 0.94
57 3 0.06
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (56 bp):
ATTTGTTATCCAACTGTTATCTTTTCTAACCAGCAGCCATGTATACCAAATGTTAA
Found at i:16176305 original size:28 final size:30
Alignment explanation
Indices: 16176273--16176331 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
16176263 AGCCATTTTT
16176273 AACAC-ATGT-TAAGCAACAAAAATATTCC
1 AACACAATGTGTAAGCAACAAAAATATTCC
* * *
16176301 AACACAATTTGTAATCAACAAAAATTTTCC
1 AACACAATGTGTAAGCAACAAAAATATTCC
16176331 A
1 A
16176332 TTTCATTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 5 0.19
29 3 0.12
30 18 0.69
ACGTcount: A:0.49, C:0.20, G:0.05, T:0.25
Consensus pattern (30 bp):
AACACAATGTGTAAGCAACAAAAATATTCC
Found at i:16176800 original size:26 final size:26
Alignment explanation
Indices: 16176771--16176821 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
16176761 ATATCTATTT
*
16176771 TTCCT-CTTCTCCTTCTTTTTCTTCTC
1 TTCCTGCTTCT-CTTCTTCTTCTTCTC
16176797 TTCCTGCTTCTCTTCTTCTTCTTCT
1 TTCCTGCTTCTCTTCTTCTTCTTCT
16176822 TCCTTTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.00, C:0.37, G:0.02, T:0.61
Consensus pattern (26 bp):
TTCCTGCTTCTCTTCTTCTTCTTCTC
Found at i:16183400 original size:27 final size:27
Alignment explanation
Indices: 16183336--16183435 Score: 103
Period size: 27 Copynumber: 3.6 Consensus size: 27
16183326 GAATATCTAG
* *
16183336 CCCAAACACACCTGGAATATTATAAATCCT
1 CCCAAACACACC---AATATAATATATCCT
** *
16183366 CCGTAACACACCAGTATAATATAGT-CT
1 CCCAAACACACCAATATAATATA-TCCT
*
16183393 CCCAAACACACCAATATATTATATCCT
1 CCCAAACACACCAATATAATATATCCT
16183420 CCCAAACACACCAATA
1 CCCAAACACACCAATA
16183436 AGGCATTAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
26 1 0.02
27 47 0.80
28 1 0.02
30 10 0.17
ACGTcount: A:0.41, C:0.32, G:0.05, T:0.22
Consensus pattern (27 bp):
CCCAAACACACCAATATAATATATCCT
Found at i:16184466 original size:14 final size:13
Alignment explanation
Indices: 16184439--16184486 Score: 60
Period size: 14 Copynumber: 3.5 Consensus size: 13
16184429 TTTACTTTCG
16184439 TTTTATTCTATTTA
1 TTTTATT-TATTTA
16184453 CTTTTATTTATTTA
1 -TTTTATTTATTTA
*
16184467 TTTTATTTTATTTG
1 TTTTA-TTTATTTA
16184481 TTTTAT
1 TTTTAT
16184487 ATTAATAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 6 0.19
14 18 0.58
15 7 0.23
ACGTcount: A:0.19, C:0.04, G:0.02, T:0.75
Consensus pattern (13 bp):
TTTTATTTATTTA
Found at i:16184497 original size:28 final size:28
Alignment explanation
Indices: 16184439--16184523 Score: 73
Period size: 28 Copynumber: 3.0 Consensus size: 28
16184429 TTTACTTTCG
* *
16184439 TTTTATTCTATTTACTTTTATTTATTTA
1 TTTTATTCTATTTACTTTTATTTAATAA
* *
16184467 TTTTATTTTATTT-GTTTTATATTAATAA
1 TTTTATTCTATTTACTTTTAT-TTAATAA
* * *
16184495 TTTAATTCTAATTATCTATTACTTTAATA
1 TTTTATTCTATTTA-CTTTTA-TTTAATA
16184524 TTAAGTAAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
27 6 0.14
28 27 0.61
30 10 0.23
31 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.65
Consensus pattern (28 bp):
TTTTATTCTATTTACTTTTATTTAATAA
Found at i:16184964 original size:15 final size:14
Alignment explanation
Indices: 16184931--16184976 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
16184921 ATAATATCAC
*
16184931 TATAATTTA-ATTA
1 TATAAATTATATTA
16184944 TCATAAATTCATATTA
1 T-ATAAATT-ATATTA
16184960 TATAAATTATATT-
1 TATAAATTATATTA
16184973 TATA
1 TATA
16184977 TCTCATTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
13 5 0.17
14 11 0.38
15 8 0.28
16 5 0.17
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (14 bp):
TATAAATTATATTA
Found at i:16184977 original size:15 final size:15
Alignment explanation
Indices: 16184940--16184976 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
16184930 CTATAATTTA
16184940 ATTATCATAAATTCAT
1 ATTAT-ATAAATTCAT
16184956 ATTATATAAATT-AT
1 ATTATATAAATTCAT
16184970 ATT-TATA
1 ATTATATA
16184977 TCTCATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.19
14 5 0.24
15 7 0.33
16 5 0.24
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (15 bp):
ATTATATAAATTCAT
Found at i:16195170 original size:14 final size:14
Alignment explanation
Indices: 16195153--16195187 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
16195143 TAAAATATAT
16195153 TTTATAATTATTCA
1 TTTATAATTATTCA
16195167 TTTATAATTATTCA
1 TTTATAATTATTCA
16195181 TTTATAA
1 TTTATAA
16195188 GAGAATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTATAATTATTCA
Found at i:16196510 original size:16 final size:16
Alignment explanation
Indices: 16196489--16196519 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
16196479 CTTTTTTCGT
16196489 TTTCATTTTCCTTCTC
1 TTTCATTTTCCTTCTC
16196505 TTTCATTTTCCTTCT
1 TTTCATTTTCCTTCT
16196520 ATCTTAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTCATTTTCCTTCTC
Found at i:16204444 original size:30 final size:30
Alignment explanation
Indices: 16204404--16204468 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
16204394 AAAACAATTC
* * *
16204404 TAATTGTTTGGGGA-TGAAAAATCAATGAAA
1 TAATTATTTGGGAATTG-AAAATCAATCAAA
*
16204434 TAATTATTTGGTAATTGAAAATCAATCAAA
1 TAATTATTTGGGAATTGAAAATCAATCAAA
16204464 TAATT
1 TAATT
16204469 TTAAACTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.35
Consensus pattern (30 bp):
TAATTATTTGGGAATTGAAAATCAATCAAA
Found at i:16204685 original size:19 final size:19
Alignment explanation
Indices: 16204663--16204711 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 19
16204653 TGTCCTATAG
16204663 AAGAATAATA-AATTATTAA
1 AAGAATAATATAATT-TTAA
16204682 AAG-AT-ATATAATTTTAA
1 AAGAATAATATAATTTTAA
*
16204699 AAAAATATATATA
1 AAGAATA-ATATA
16204712 TCAATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
17 9 0.36
18 8 0.32
19 3 0.12
20 5 0.20
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (19 bp):
AAGAATAATATAATTTTAA
Found at i:16217671 original size:19 final size:19
Alignment explanation
Indices: 16217649--16217686 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
16217639 AAAAAAATAA
*
16217649 TTAAAATCAAAATCAAAAT
1 TTAAAATAAAAATCAAAAT
*
16217668 TTAAAATAAAAATGAAAAT
1 TTAAAATAAAAATCAAAAT
16217687 GCTCATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (19 bp):
TTAAAATAAAAATCAAAAT
Found at i:16218675 original size:30 final size:29
Alignment explanation
Indices: 16218624--16218680 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
16218614 TATCATATAA
*
16218624 AAATTTTAATTTTATGTAATTTTATATATG
1 AAATTTTAATTTGATGTAATTTT-TATATG
*
16218654 AAATTTTGATTTGAT-TCAATTTTTATA
1 AAATTTTAATTTGATGT-AATTTTTATA
16218681 AATCATTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (29 bp):
AAATTTTAATTTGATGTAATTTTTATATG
Found at i:16220758 original size:7 final size:7
Alignment explanation
Indices: 16220746--16220776 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
16220736 AATATATAAA
16220746 AATATAT
1 AATATAT
16220753 AATATAT
1 AATATAT
16220760 AATATAT
1 AATATAT
16220767 AAATATAT
1 -AATATAT
16220775 AA
1 AA
16220777 AATAACTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
AATATAT
Found at i:16220786 original size:17 final size:16
Alignment explanation
Indices: 16220735--16220786 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
16220725 AATATTTTTA
16220735 AAATATATAAAA-ATAT
1 AAATATATAAAATA-AT
*
16220751 ATAATATATAATAT-AT
1 A-AATATATAAAATAAT
16220767 AAATATATAAAATAACT
1 AAATATATAAAATAA-T
16220784 AAA
1 AAA
16220787 ATTTTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
15 11 0.37
16 5 0.17
17 14 0.47
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATATATAAAATAAT
Found at i:16231166 original size:44 final size:44
Alignment explanation
Indices: 16231073--16231231 Score: 146
Period size: 44 Copynumber: 3.6 Consensus size: 44
16231063 CTGTTCTGCC
* * * *
16231073 TGTAAGACCACGTCTATGACGTTGGCATCGATTTCTATTCTGT-G
1 TGTAAGACCACGTCTAGGACATTGGCATCGATTTCTGTT-TTTCG
* * *
16231117 AGTAAGACCACGTCTATGACATTGGCATCAATTTCTGTTTTTCG
1 TGTAAGACCACGTCTAGGACATTGGCATCGATTTCTGTTTTTCG
* * * * *
16231161 TGTAAGACC-CTGTCTAGGACAGTGACATCGATGTT-TG-ATTACA
1 TGTAAGACCAC-GTCTAGGACATTGGCATCGAT-TTCTGTTTTTCG
*
16231204 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTAGGACATTGGCAT
16231232 TGTATATGCT
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
43 29 0.31
44 64 0.67
45 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (44 bp):
TGTAAGACCACGTCTAGGACATTGGCATCGATTTCTGTTTTTCG
Found at i:16233108 original size:43 final size:44
Alignment explanation
Indices: 16233047--16233237 Score: 189
Period size: 43 Copynumber: 4.4 Consensus size: 44
16233037 GTTATCGAGA
*
16233047 TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGA-ATTGTAT
1 TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGACATCGTAT
* *
16233090 TGTGATTACATGTAAGACCCTGTGTAGGACAGT-GACATTGTAT
1 TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGACATCGTAT
** * * * *
16233133 TACGATTACGTGTAAGACCATGTGTGGGACA-TCGACATCGTTAA
1 TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGACATCG-TAT
* *
16233177 T-CGACTT-CATGTAAGATCCTGTGTGGGACAGTGG-CATCG-AT
1 TGTGA-TTACATGTAAGACCCTGTGTGGGACAGTGGACATCGTAT
* *
16233218 ATGTGATAACACGTAAGACC
1 -TGTGATTACATGTAAGACC
16233238 ATATCTAGGA
Statistics
Matches: 123, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
41 1 0.01
42 5 0.04
43 110 0.89
44 7 0.06
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (44 bp):
TGTGATTACATGTAAGACCCTGTGTGGGACAGTGGACATCGTAT
Found at i:16238173 original size:18 final size:17
Alignment explanation
Indices: 16238136--16238184 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
16238126 GATTTAGGTC
*
16238136 GTGTGGGTCATACGGGT
1 GTGTGGGTCACACGGGT
*
16238153 GTGTGGGTCTACACTGGT
1 GTGTGGGTC-ACACGGGT
16238171 GTGTGGGTTCACAC
1 GTGTGGG-TCACAC
16238185 AGACGTGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 9 0.32
18 17 0.61
19 2 0.07
ACGTcount: A:0.12, C:0.16, G:0.41, T:0.31
Consensus pattern (17 bp):
GTGTGGGTCACACGGGT
Found at i:16254112 original size:66 final size:66
Alignment explanation
Indices: 16253966--16254113 Score: 183
Period size: 66 Copynumber: 2.2 Consensus size: 66
16253956 GGTTTAGAGT
** * * *
16253966 TTTTTTTTTAAAAT-AATTAAATTAGGTTTTAGGGGTTTTAAATAAATTAATTAAATTAGATTTC
1 TTTTTTTAAAAAATAAATTAAATTAGGATTTAGGGGTTTTAAATAAATAAATTAAATTAGATTTA
16254030 G
66 G
*** *
16254031 GGGTTTTAAATAAATAAATTAAATTA-GATTTAGGGGTTTTAAATAAATAAATTAAATTAGGCTT
1 TTTTTTTAAA-AAATAAATTAAATTAGGATTTAGGGGTTTTAAATAAATAAATTAAATTA-GATT
16254095 TAG
64 TAG
16254098 TTTTTTTAAAAAATAA
1 TTTTTTTAAAAAATAA
16254114 TTTTTGTGTT
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
65 5 0.07
66 41 0.60
67 22 0.32
ACGTcount: A:0.41, C:0.01, G:0.13, T:0.45
Consensus pattern (66 bp):
TTTTTTTAAAAAATAAATTAAATTAGGATTTAGGGGTTTTAAATAAATAAATTAAATTAGATTTA
G
Found at i:16254113 original size:33 final size:33
Alignment explanation
Indices: 16253976--16254090 Score: 187
Period size: 33 Copynumber: 3.5 Consensus size: 33
16253966 TTTTTTTTTA
*
16253976 AAAT-AATTAAATTAGGTTTTAGGGGTTTTAAAT
1 AAATAAATTAAATTA-GATTTAGGGGTTTTAAAT
* *
16254009 AAATTAATTAAATTAGATTTCGGGGTTTTAAAT
1 AAATAAATTAAATTAGATTTAGGGGTTTTAAAT
16254042 AAATAAATTAAATTAGATTTAGGGGTTTTAAAT
1 AAATAAATTAAATTAGATTTAGGGGTTTTAAAT
16254075 AAATAAATTAAATTAG
1 AAATAAATTAAATTAG
16254091 GCTTTAGTTT
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
33 67 0.87
34 10 0.13
ACGTcount: A:0.44, C:0.01, G:0.15, T:0.40
Consensus pattern (33 bp):
AAATAAATTAAATTAGATTTAGGGGTTTTAAAT
Found at i:16254415 original size:125 final size:126
Alignment explanation
Indices: 16254194--16254463 Score: 366
Period size: 125 Copynumber: 2.2 Consensus size: 126
16254184 AAGAAAGATT
* * * * * *
16254194 TTTTTTTACAGTAGTTTC-AAAAAAATTATTTTGTGAAGACGATTCTGAAAAGATAATGTCAAAA
1 TTTTTATACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTGAAAAAATAATGTCAAAA
* * *
16254258 ATGCTTCAAGTAGGATGCACTATCAGCAAAATTACTG-AAAAAGC-TCTCACGTGAATGCTC
66 ACGCTTCAAGTAAGATGCACTATCAGCAAAATTACTGAAAAAAGCTTC-CACGTGAACGCTC
* *
16254318 TTTTTATACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGATTTTGAAAAAATAGTGTCAAAA
1 TTTTTATACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTGAAAAAATAATGTCAAAA
* * *
16254383 ACGCTTCAAGTAAGATGCACTGTCAGCAAAATTATTGAAAAAAGCTTCCACGTGGACGCTC
66 ACGCTTCAAGTAAGATGCACTATCAGCAAAATTACTGAAAAAAGCTTCCACGTGAACGCTC
* *
16254444 TTTTTCTACAATAGTTCCTG
1 TTTTTATACAGTAGTTCCTG
16254464 CTTGGCCTTA
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
124 16 0.13
125 73 0.57
126 36 0.28
127 2 0.02
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.31
Consensus pattern (126 bp):
TTTTTATACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGATTCTGAAAAAATAATGTCAAAA
ACGCTTCAAGTAAGATGCACTATCAGCAAAATTACTGAAAAAAGCTTCCACGTGAACGCTC
Found at i:16267165 original size:47 final size:47
Alignment explanation
Indices: 16267112--16267287 Score: 228
Period size: 47 Copynumber: 3.7 Consensus size: 47
16267102 CATCGATAAC
16267112 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCAGAG
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCAGAG
* * *
16267159 TACCTATACCATGGCCTGTAGCCAAATCAAGGTAACTTATCCCGGAG
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCAGAG
** ** * *
16267206 CGCCTATACCATGGCCC-ATAGCCAAATCAAGGTAACTCCTCTCCAAAA
1 TACCTATACCATGGCCCGA-AGCCAAATCAAGGTAACTTATC-CCAGAG
* *
16267254 TACCTATACCATGGCTCGTAGCCAAATCAAGGTA
1 TACCTATACCATGGCCCGAAGCCAAATCAAGGTA
16267288 TCACTCGCAC
Statistics
Matches: 110, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
47 78 0.71
48 32 0.29
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.21
Consensus pattern (47 bp):
TACCTATACCATGGCCCGAAGCCAAATCAAGGTAACTTATCCCAGAG
Found at i:16270770 original size:24 final size:24
Alignment explanation
Indices: 16270704--16270780 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
16270694 AGTGTTAGAA
* * *
16270704 ATATACTATATATATTGTTTAAAGT
1 ATATACTATTTATATTG-TCAAAAT
* * *
16270729 ATATAC-A-TGAAATAGTCAAAAT
1 ATATACTATTTATATTGTCAAAAT
16270751 ATATACTATTTATATTGTCAAAAT
1 ATATACTATTTATATTGTCAAAAT
16270775 ATATAC
1 ATATAC
16270781 ATAATGTATA
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
22 11 0.27
23 5 0.12
24 19 0.46
25 6 0.15
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.40
Consensus pattern (24 bp):
ATATACTATTTATATTGTCAAAAT
Found at i:16270869 original size:9 final size:9
Alignment explanation
Indices: 16270855--16270879 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
16270845 ATGTATACCT
16270855 ATATATATA
1 ATATATATA
16270864 ATATATATA
1 ATATATATA
16270873 ATATATA
1 ATATATA
16270880 CAAAGTACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
ATATATATA
Found at i:16271419 original size:19 final size:18
Alignment explanation
Indices: 16271383--16271431 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
16271373 GAAATACTTA
*
16271383 ATACATAATATTGGAATAT
1 ATACATAATA-TGAAATAT
*
16271402 TTACATAATATGAAAATAT
1 ATACATAATATG-AAATAT
*
16271421 ATATATAATAT
1 ATACATAATAT
16271432 AGTATTAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
18 2 0.08
19 23 0.92
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (18 bp):
ATACATAATATGAAATAT
Found at i:16271598 original size:22 final size:23
Alignment explanation
Indices: 16271548--16271609 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
16271538 AATATATAAA
* *
16271548 ATATAATATTTGAAAACACATGT
1 ATATAATATATGAAAACACATAT
*
16271571 ATATAATATATGAAAA-ATATAT
1 ATATAATATATGAAAACACATAT
*
16271593 ATATAATAGTATTAAAA
1 ATATAATA-TATGAAAA
16271610 TATTTACGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 12 0.35
23 22 0.65
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.35
Consensus pattern (23 bp):
ATATAATATATGAAAACACATAT
Found at i:16271684 original size:19 final size:19
Alignment explanation
Indices: 16271660--16271696 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
16271650 TGATGCTACA
*
16271660 TAAATATATATAAATATAT
1 TAAATACATATAAATATAT
*
16271679 TAAATACATATATATATA
1 TAAATACATATAAATATA
16271697 CACATGCATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
TAAATACATATAAATATAT
Found at i:16275748 original size:17 final size:18
Alignment explanation
Indices: 16275728--16275761 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
16275718 TATATAACTA
*
16275728 TATTGTTAATA-ATTAAT
1 TATTATTAATATATTAAT
16275745 TATTATTAATATATTAA
1 TATTATTAATATATTAA
16275762 ATTCAACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
TATTATTAATATATTAAT
Found at i:16281834 original size:15 final size:15
Alignment explanation
Indices: 16281814--16281844 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
16281804 ATGGCCTCCA
*
16281814 GCCCACGCACCCCCG
1 GCCCACACACCCCCG
16281829 GCCCACACACCCCCG
1 GCCCACACACCCCCG
16281844 G
1 G
16281845 TTGGGGATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.65, G:0.19, T:0.00
Consensus pattern (15 bp):
GCCCACACACCCCCG
Found at i:16283035 original size:29 final size:29
Alignment explanation
Indices: 16282993--16283048 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
16282983 AATAGTGTTA
16282993 GTACGACACGTTCGATATGATTACAAATT
1 GTACGACACGTTCGATATGATTACAAATT
*
16283022 GTACGACATGTTCGATATGATTACAAA
1 GTACGACACGTTCGATATGATTACAAA
16283049 CTAACTTCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (29 bp):
GTACGACACGTTCGATATGATTACAAATT
Found at i:16286108 original size:18 final size:19
Alignment explanation
Indices: 16286075--16286110 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
16286065 GAGTGCATAT
16286075 CTGGCACACGAAGTGCATC
1 CTGGCACACGAAGTGCATC
*
16286094 CTGGCACA-TAAGTGCAT
1 CTGGCACACGAAGTGCAT
16286111 AATCTCATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.19
Consensus pattern (19 bp):
CTGGCACACGAAGTGCATC
Found at i:16288502 original size:16 final size:17
Alignment explanation
Indices: 16288452--16288503 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
16288442 TGTTTTTAAC
16288452 AAATATTTTTAAGATAAA
1 AAATATTTTTAAGAT-AA
* *
16288470 AAATACTTTTAATATAA
1 AAATATTTTTAAGATAA
16288487 AAATATTTTTAA-ATAA
1 AAATATTTTTAAGATAA
16288503 A
1 A
16288504 TTACTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
16 5 0.16
17 13 0.42
18 13 0.42
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (17 bp):
AAATATTTTTAAGATAA
Found at i:16292784 original size:27 final size:27
Alignment explanation
Indices: 16292717--16292784 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
16292707 CCAACATCCT
* * * *
16292717 CCGATTTAATATCCACCACTTCAGTTC
1 CCGATCTAACATCCACCACATCAGATC
* *
16292744 CCGGTCTAATATCCACCACATCAGATC
1 CCGATCTAACATCCACCACATCAGATC
*
16292771 CCGATCTTACATCC
1 CCGATCTAACATCC
16292785 TTAATCTCTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.26, C:0.37, G:0.09, T:0.28
Consensus pattern (27 bp):
CCGATCTAACATCCACCACATCAGATC
Found at i:16300055 original size:18 final size:18
Alignment explanation
Indices: 16300029--16300087 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
16300019 TTGAAGGTAC
*
16300029 TTTAGTTTTTTTAATTTT
1 TTTACTTTTTTTAATTTT
*
16300047 TTTAC-TTTTTTAGTTTTT
1 TTTACTTTTTTTA-ATTTT
* *
16300065 TTTACTTTAATTTAATATT
1 TTTACTTT-TTTTAATTTT
16300084 TTTA
1 TTTA
16300088 TTTAGTTTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
17 7 0.21
18 13 0.39
19 9 0.27
20 4 0.12
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.73
Consensus pattern (18 bp):
TTTACTTTTTTTAATTTT
Found at i:16300113 original size:15 final size:15
Alignment explanation
Indices: 16300079--16300116 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
16300069 CTTTAATTTA
16300079 ATATTTTTATTTAGT
1 ATATTTTTATTTAGT
*
16300094 TTATTTTTATTGT-GT
1 ATATTTTTATT-TAGT
16300109 ATATTTTT
1 ATATTTTT
16300117 TTACTCTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 19 0.95
16 1 0.05
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.71
Consensus pattern (15 bp):
ATATTTTTATTTAGT
Found at i:16301729 original size:21 final size:22
Alignment explanation
Indices: 16301691--16301731 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
16301681 ATGAAATGAT
16301691 AGTAAAACAGTGGAAAAACAGA
1 AGTAAAACAGTGGAAAAACAGA
16301713 AGTAAAACAGT-GAAAAACA
1 AGTAAAACAGTGGAAAAACA
16301732 ATAGCAGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.61, C:0.10, G:0.20, T:0.10
Consensus pattern (22 bp):
AGTAAAACAGTGGAAAAACAGA
Found at i:16313307 original size:6 final size:6
Alignment explanation
Indices: 16313275--16313315 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
16313265 ACAATACCTA
* *
16313275 AACAGT AATCAGT AACGGT AGCAGT AACAGT AACAGT AACA
1 AACAGT AA-CAGT AACAGT AACAGT AACAGT AACAGT AACA
16313316 ATATTCAACA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (6 bp):
AACAGT
Found at i:16313348 original size:45 final size:44
Alignment explanation
Indices: 16313298--16313405 Score: 146
Period size: 45 Copynumber: 2.4 Consensus size: 44
16313288 AACGGTAGCA
* *
16313298 GTAACAGTAACAGTAACAATATTCAACATACAAAGTGTTGAATC
1 GTAACAGTAACAGTAACAATATTCAACACACAAAGTGTCGAATC
* *
16313342 TGTAACAGTAAC-GATAACAATATTCGATACACAAAGTGTCGAATC
1 -GTAACAGTAACAG-TAACAATATTCAACACACAAAGTGTCGAATC
16313387 GATAACAGTAACAGTAACA
1 G-TAACAGTAACAGTAACA
16313406 GTAATAGTAG
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
44 2 0.04
45 53 0.95
46 1 0.02
ACGTcount: A:0.45, C:0.17, G:0.15, T:0.23
Consensus pattern (44 bp):
GTAACAGTAACAGTAACAATATTCAACACACAAAGTGTCGAATC
Found at i:16313647 original size:40 final size:40
Alignment explanation
Indices: 16313601--16313687 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 40
16313591 AATTCATTAC
* * *
16313601 TTCAGTAATTTCACAGTTCAATGCAGTACACATAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTACACAAAACAATA
* * **
16313641 TTCAGTAACTTCAGAATTCAATTCAGTATTCAAAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTACACAAAACAATA
16313681 TTCAGTA
1 TTCAGTA
16313688 TTCCATAATT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.32
Consensus pattern (40 bp):
TTCAGTAACTTCACAATTCAATGCAGTACACAAAACAATA
Found at i:16314061 original size:22 final size:22
Alignment explanation
Indices: 16314019--16314064 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
16314009 TTAACTAAAC
*
16314019 TCATATATTTTTCTTCTTCAAT
1 TCATATATTTTTATTCTTCAAT
*
16314041 TCATATCTTTTTATTAC-TCAAT
1 TCATATATTTTTATT-CTTCAAT
16314063 TC
1 TC
16314065 CCTACCAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.57
Consensus pattern (22 bp):
TCATATATTTTTATTCTTCAAT
Found at i:16314595 original size:12 final size:12
Alignment explanation
Indices: 16314578--16314604 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
16314568 GCACATGTTT
16314578 ATAACCATTACC
1 ATAACCATTACC
16314590 ATAACCATTACC
1 ATAACCATTACC
16314602 ATA
1 ATA
16314605 CATGTGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.30, G:0.00, T:0.26
Consensus pattern (12 bp):
ATAACCATTACC
Done.