Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 5 of 153
Found at i:1448092 original size:85 final size:86
Alignment explanation
Indices: 1447989--1448405 Score: 249
Period size: 85 Copynumber: 4.8 Consensus size: 86
1447979 CTTCGGTCTA
*
1447989 TTCCACTGTAATCTCAGGGAGATAAGA-CCTGATGCGATCTACTCTACTGTAA-CTTCAGAGAGA
1 TTCCACTGTAATCTCAGGGAGATAAGATCCTGATGCGATCTACTCCACTGTAATC-TCAGAGAGA
* *
1448052 TAAGATTCTTTATTTTTATCCG
65 TAAGATTCTTGATTTCTATCCG
* * * * * * * * *
1448074 TTCCACTGTAATCTCAGGGAAATAGGATTACTGGTTTCAATTTGCTCCACTGTAATCTCAGGGAG
1 TTCCACTGTAATCTCAGGGAGATAAGA-TCCT-GATGCGATCTACTCCACTGTAATCTCAGAGAG
* * * **
1448139 ATAAGA--CCTGA-TGCGATCTA
64 ATAAGATTCTTGATTTCTATCCG
* * * * * *** *** *
1448159 CTCTACTGTAA-CTTCAGAGAGATAAGATTCTTTATTTTTATCCGTTCCACTGTAATCTCAGGGA
1 TTCCACTGTAATC-TCAGGGAGATAAGA-TCCTGA-TGCGATCTACTCCACTGTAATCTCAGAGA
* * * * **
1448223 AATAGGATTAC-TGGTTTCAATTTG
63 GATAAGATT-CTTGATTTCTATCCG
* *
1448247 CTCCACTGTAATCTCAGGGAGATAAGA-CCTGATGCGATCTACTCTACTGTAA-CTTCAGAGAGA
1 TTCCACTGTAATCTCAGGGAGATAAGATCCTGATGCGATCTACTCCACTGTAATC-TCAGAGAGA
* *
1448310 TAAGATTCTTTATTTTTATCCG
65 TAAGATTCTTGATTTCTATCCG
* * * * * * * * *
1448332 TTCCACTGTAATCTCAGGGAAATAGGATTACTGGTTTCAATTTGCTCCACTGTAATCTCAGGGAG
1 TTCCACTGTAATCTCAGGGAGATAAGA-TCCT-GATGCGATCTACTCCACTGTAATCTCAGAGAG
1448397 ATAAGATTC
64 ATAAGATTC
1448406 ACCATTTTCG
Statistics
Matches: 246, Mismatches: 69, Indels: 31
0.71 0.20 0.09
Matches are distributed among these distances:
84 3 0.01
85 138 0.56
86 6 0.02
87 6 0.02
88 90 0.37
89 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (86 bp):
TTCCACTGTAATCTCAGGGAGATAAGATCCTGATGCGATCTACTCCACTGTAATCTCAGAGAGAT
AAGATTCTTGATTTCTATCCG
Found at i:1448149 original size:129 final size:129
Alignment explanation
Indices: 1447990--1448402 Score: 826
Period size: 129 Copynumber: 3.2 Consensus size: 129
1447980 TTCGGTCTAT
1447990 TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
1 TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
1448055 GATTCTTTATTTTTATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGTTTCAATTTGC
66 GATTCTTTATTTTTATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGTTTCAATTTGC
1448119 TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
1 TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
1448184 GATTCTTTATTTTTATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGTTTCAATTTGC
66 GATTCTTTATTTTTATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGTTTCAATTTGC
1448248 TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
1 TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
1448313 GATTCTTTATTTTTATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGTTTCAATTTGC
66 GATTCTTTATTTTTATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGTTTCAATTTGC
1448377 TCCACTGTAATCTCAGGGAGATAAGA
1 TCCACTGTAATCTCAGGGAGATAAGA
1448403 TTCACCATTT
Statistics
Matches: 284, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 284 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (129 bp):
TCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAA
GATTCTTTATTTTTATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGTTTCAATTTGC
Found at i:1448492 original size:64 final size:64
Alignment explanation
Indices: 1448391--1448774 Score: 768
Period size: 64 Copynumber: 6.0 Consensus size: 64
1448381 CTGTAATCTC
1448391 AGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCAGGAGATATGATATGGAAT
1 AGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCAGGAGATATGATATGGAAT
1448455 AGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCAGGAGATATGATATGGAAT
1 AGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCAGGAGATATGATATGGAAT
1448519 AGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCAGGAGATATGATATGGAAT
1 AGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCAGGAGATATGATATGGAAT
1448583 AGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCAGGAGATATGATATGGAAT
1 AGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCAGGAGATATGATATGGAAT
1448647 AGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCAGGAGATATGATATGGAAT
1 AGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCAGGAGATATGATATGGAAT
1448711 AGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCAGGAGATATGATATGGAAT
1 AGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCAGGAGATATGATATGGAAT
1448775 TCTTCGGTCT
Statistics
Matches: 320, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 320 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (64 bp):
AGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCAGGAGATATGATATGGAAT
Found at i:1449467 original size:175 final size:175
Alignment explanation
Indices: 1448772--1449455 Score: 1289
Period size: 175 Copynumber: 3.9 Consensus size: 175
1448762 TATGATATGG
* * *
1448772 AATTCTTCGGTCTATTCCACTGTAATCTTAGGCAGATAAGA-CTAGATGCAATCTACTCTACTGT
1 AATTCTTCGGTCTATTCCACTGTAATATCAGGAAGATAAGACCT-GATGCAATCTACTCTACTGT
*
1448836 AACTTTAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAGTCTCAGGGAAATAGGATTA
65 AACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAGTCTCAGGGAAATAGGATTA
1448901 CTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGACATAAGATCTGA
130 CTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGACATAAGATCTGA
1448947 AATTCTTCGGTCTATTCCACTGTAATATCAGGAAGATAAGACCTGATGCAATCTACTCTACTGTA
1 AATTCTTCGGTCTATTCCACTGTAATATCAGGAAGATAAGACCTGATGCAATCTACTCTACTGTA
1449012 ACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAGTCTCAGGGAAATAGGATTAC
66 ACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAGTCTCAGGGAAATAGGATTAC
1449077 TAGCTTCAATCTGCTCCGCTGTAATCTCAGGGACATAAGATCTGA
131 TAGCTTCAATCTGCTCCGCTGTAATCTCAGGGACATAAGATCTGA
1449122 AATTCTTCGGTCTATTCCACTGTAATATCAGGAAGATAAGACCTGATGCAATCTACTCTACTGTA
1 AATTCTTCGGTCTATTCCACTGTAATATCAGGAAGATAAGACCTGATGCAATCTACTCTACTGTA
1449187 ACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAGTCTCAGGGAAATAGGATTAC
66 ACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAGTCTCAGGGAAATAGGATTAC
1449252 TAGCTTCAATCTGCTCCGCTGTAATCTCAGGGACATAAGATCTGA
131 TAGCTTCAATCTGCTCCGCTGTAATCTCAGGGACATAAGATCTGA
1449297 AATTCTTCGGTCTATTCCACTGTAATATCAGGAAGATAAGACCTGATGCAATCTACTCTACTGTA
1 AATTCTTCGGTCTATTCCACTGTAATATCAGGAAGATAAGACCTGATGCAATCTACTCTACTGTA
* * *
1449362 ACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTAAGGGAAATAGGATTAC
66 ACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAGTCTCAGGGAAATAGGATTAC
1449427 TAGCTTCAATCTGCTCCGCTGTAATCTCA
131 TAGCTTCAATCTGCTCCGCTGTAATCTCA
1449456 ATGAGATAAG
Statistics
Matches: 501, Mismatches: 7, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
175 499 1.00
176 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (175 bp):
AATTCTTCGGTCTATTCCACTGTAATATCAGGAAGATAAGACCTGATGCAATCTACTCTACTGTA
ACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAGTCTCAGGGAAATAGGATTAC
TAGCTTCAATCTGCTCCGCTGTAATCTCAGGGACATAAGATCTGA
Found at i:1449560 original size:219 final size:219
Alignment explanation
Indices: 1449286--1451204 Score: 1644
Period size: 219 Copynumber: 8.8 Consensus size: 219
1449276 TCTCAGGGAC
* * *
1449286 ATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATATCAGGAAGATAAGACCTGATGCAATCT
1 ATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
*
1449351 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTAAGGGA
66 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGA
* ** *
1449416 AATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAATGAGATAAGATTCACCATTTTTGA
131 AATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCACCATTTTCGA
1449481 TTAGCTCCACTATTGCTTAGAGAG
196 TTAGCTCCACTATTGCTTAGAGAG
* * * *
1449505 ATAAGATCTGAAATTATTCGGTCTATTCCAGC-GTAATATCTGGGA-AGTAAGACCTGATGTGAT
1 ATAAGATCTGAAATTCTTCGGTCTATTCCA-CTGTAATCTCAGGGAGA-TAAGACCTGATGCGAT
* * * *
1449568 CTACTCTACCGTAACTTCAAAGAGATAAGATCTTTTATTTTAAT-TCGTTCCACTGTAATCTCAA
64 CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCT-GTTCCACTGTAATCTCAG
* * * * * * *
1449632 GGAAATAGGATTGCTGGCTTAAATCTGCTTCATTGAAATCTCAGGGAGATAAGATTCACCGTTTT
128 GGAAATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCACCATTTT
*
1449697 CGATTAGCTCCACTATTTCTTAGAGAG
193 CGATTAGCTCCACTATTGCTTAGAGAG
* * * * * *
1449724 ATTAGACCTGGAATTCCTAGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATTT
1 ATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
* *
1449789 ACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGA
66 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGA
* * * ** * * *
1449854 AATAGAATTATTGGCTTCAATCTGCTCCACCATAATCTTAGGGAGATAAGATTTACCATTTTTGA
131 AATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCACCATTTTCGA
*
1449919 TTAGCTCCACTATTTCTTAGAGAG
196 TTAGCTCCACTATTGCTTAGAGAG
* * * *
1449943 ATAAGATCTGAAATTATTCGGTCTATTCCAGC-GTAATATCTGGGA-AGTAAGACCTGATGTGAT
1 ATAAGATCTGAAATTCTTCGGTCTATTCCA-CTGTAATCTCAGGGAGA-TAAGACCTGATGCGAT
* * * *
1450006 CTACTCTACCGTAACTTCAAAGAGATAAGATCTTTTATTTTAAT-TCGTTCCACTGTAATCTCAA
64 CTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCT-GTTCCACTGTAATCTCAG
* * * * * * *
1450070 GGAAATAGGATTGCTGGCTTAAATCTGCTTCATTGAAATCTCAGGGAGATAAGATTCACCGTTTT
128 GGAAATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCACCATTTT
*
1450135 CGATTAGCTCCACTATTTCTTAGAGAG
193 CGATTAGCTCCACTATTGCTTAGAGAG
* * * * * *
1450162 ATTAGACCTGGAATTCCTAGGTCTATTCCACTGTAATCTCAGGGAAATAAGACCTGATGCGATCT
1 ATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
* * * *
1450227 ACTCTACTGTAACTTTAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGT
66 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGA
* * * * * * *
1450292 AATAGGATTACTAGCTTTAATCTGCTCCGCTATAATCTCAGGAAGATAAGCTCTGA-AATTTTTC
131 AATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGAT-TCACCA-TTTTC
* * *
1450356 -AGTCTA-TTCCACTGTAAT-CTCAG-GAAG
194 GA-T-TAGCTCCAC--TATTGCTTAGAG-AG
* * * * * * **
1450383 ATAAGA-CTTG--A---TGCGATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTT
1 ATAAGATC-TGAAATTCTTCGGTCTATTCCACTGTAATC-TCAGGGAGATAAGA-CC-TGA-TGC
* * * * * * * *
1450441 AATCT-CGTCCACTGTAA-TCTCAGAGAAATAGGAT--TACTAGCTTCAATCTGCTT-CGCTGTA
61 GATCTAC-TCTACTGTAACT-TCAGAGAGATAAGATCCT-TTA-TTTTAATCTG-TTCCACTGTA
* * * * * ** * * *
1450501 ATCTCAAGGAGAGAAGATTCACAATTTTCGAT-TAGCTCCAC--TATTGCTTAGGGAGATAAGA-
121 ATCTCAGGGAAATAGGATT-ACTAGCTTCAATCT-GCTCCACTGTAAT-CTCAGGGAGATAAGAT
*** * * * *
1450562 TCTGGATTTCTTC-AGTCTA-TTCCACTGTAAT-CTCAGGGAG
183 TCACCA-TT-TTCGA-T-TAGCTCCAC--TATTGCTTAGAGAG
* * * * * * * *
1450602 ATAAGACCTG--A---TGCGATCTACTCTACTGTAA-CTTTAGAGG-GATAAGATCCTTTATTTT
1 ATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATC-TCAG-GGAGATAAGA-CC-TGA--TG
** * * * * *** * * *
1450660 C-ATCCGCTCCACTGTAA-TCTCAG-GCAAATAGGATTAC-TGGCTTTAATTTGCTCCGCTGTAA
60 CGATCTACTCTACTGTAACT-TCAGAG-AGATAAGA-TCCTTTATTTTAATCTGTTCCACTGTAA
* * * * ***
1450721 TCTCAGGGAGATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTTTTGGAGATAAGATTCAC
122 TCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCAC
* ** *
1450786 CGTCGTCGATCT-GCTCCACTATTGCTCAG-GAAG
187 CATTTTCGAT-TAGCTCCACTATTGCTTAGAG-AG
* * * * *
1450819 ACAAGATCTGAAACTCTTCGGTTTATTCCACAGTAATCTCAGGGAGATAAGACCTGATGCGATTT
1 ATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
* *
1450884 ACTCTACTGTAACTTCAGAGAGATAATATCCTTTATTTTAATCTCG-TCCACTGTAATCTCAGAG
66 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCT-GTTCCACTGTAATCTCAGGG
* * * * *
1450948 AAATAGGATTACTAGCTTCAATCTGCTTCGCTGTAATCTCAAGGAGAGAAGATTCACAATTTTCG
130 AAATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCACCATTTTCG
*
1451013 ATTAGCTCCACTATTGCTTAGGGAG
195 ATTAGCTCCACTATTGCTTAGAGAG
* * *
1451038 ATAAGATCTGGATTTCTTCAGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
1 ATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
*
1451103 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCG-TCCACTGTAATCTCAGAG
66 ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCT-GTTCCACTGTAATCTCAGGG
* **
1451167 AAATAGGATTAGTTTATTTTC-ATCTGCTCCACTGTAAT
130 AAATAGGATTA--CTAGCTTCAATCTGCTCCACTGTAAT
1451205 ATCAACAAAA
Statistics
Matches: 1396, Mismatches: 236, Indels: 135
0.79 0.13 0.08
Matches are distributed among these distances:
215 1 0.00
216 30 0.02
217 19 0.01
218 48 0.03
219 1178 0.84
220 68 0.05
221 24 0.02
222 27 0.02
223 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (219 bp):
ATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCT
ACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTCAGGGA
AATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCACCATTTTCGA
TTAGCTCCACTATTGCTTAGAGAG
Found at i:1449902 original size:394 final size:391
Alignment explanation
Indices: 1448955--1449905 Score: 944
Period size: 394 Copynumber: 2.4 Consensus size: 391
1448945 GAAATTCTTC
* *
1448955 GGTCTATTCCACTGTAATATCAGGAAGATAAGACCTGATGCAATCTACTCTACTGTAACTTCAGA
1 GGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAACTTCAGA
* * *
1449020 GAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAGTCTCAGGGAAATAGGATTACTAGCTTCA
66 GAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGAATTACTAGCTTCA
* * * * *
1449085 ATCTGCTCCGCTGTAATCTCAGGGACATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATAT
131 ATCTGCTCCAC-CTAATCTTAGGGAGATAAGATCTGAAATTATTCGGTCTATTCCACTGTAATAT
* *
1449150 CAGGAAGATAAGACCTGATGCAATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTT
195 CAGGAAGATAAGACCTGATGCAATCTACTCTACCGTAACTTCAAAGAGATAAGATCCTTTATTTT
* * * * *
1449215 AATCCGTTCCACTGTAGTCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
260 AATCCGTTCCACTGTAATCTCAAGGAAATAGGATTACTAGCTTAAATCTGCTCCACTGAAATCTC
* * * * *
1449280 AGGGACATAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATATCAGGAAGATAAGACCTGATG
325 AGGGACATAAGATCTCAAATTCTTCGATCTACTCCACTATAATATCAGGAAGATAAGACCTGATC
1449345 CA
390 CA
* * * * * ** ** *
1449347 -ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAA--T
1 GGTCTATTCCACTGTAATC-TCAGGGAGATAAGA-CC-TGA-TGCAATCTACTCTACTGTAACTT
* *** * * * * * ** *
1449408 CTA-AGGGA-AATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAATGAGATA-AGATTC
62 C-AGAGAGATAATATCCTT--TA-TTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGA-ATT-
* ** ** * *
1449470 ACCATTTTTGAT-TAGCTCCA-CTATTGCTTAGAGAGATAAGATCTGAAATTATTCGGTCTATTC
121 ACTAGCTTCAATCT-GCTCCACCTAAT-CTTAGGGAGATAAGATCTGAAATTATTCGGTCTATTC
* **
1449533 CAGC-GTAATATCTGGGAAG-TAAGACCTGATGTGATCTACTCTACCGTAACTTCAAAGAGATAA
184 CA-CTGTAATATC-AGGAAGATAAGACCTGATGCAATCTACTCTACCGTAACTTCAAAGAGATAA
* * * *
1449596 GATCTTTTATTTTAATTCGTTCCACTGTAATCTCAAGGAAATAGGATTGCTGGCTTAAATCTGCT
247 GATCCTTTATTTTAATCCGTTCCACTGTAATCTCAAGGAAATAGGATTACTAGCTTAAATCTGCT
* * * ** * * *
1449661 TCATTGAAATCTCAGGGAGATAAGAT-TCACCGTT-TTCGAT-TAGCTCCACTAT-TTCTTA-GA
312 CCACTGAAATCTCAGGGACATAAGATCTCA-AATTCTTCGATCTA-CTCCACTATAATATCAGGA
*
1449721 GAGATTAGACCTGGAATTCCTA
375 -AGATAAGACCT-G-A-TCC-A
* *
1449743 GGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATTTACTCTACTGTAACTTCAGA
1 GGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAACTTCAGA
* *
1449808 GAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGAATTATTGGCTTCA
66 GAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGAATTACTAGCTTCA
1449873 ATCTGCTCCACCATAATCTTAGGGAGATAAGAT
131 ATCTGCTCCACC-TAATCTTAGGGAGATAAGAT
1449906 TTACCATTTT
Statistics
Matches: 428, Mismatches: 100, Indels: 60
0.73 0.17 0.10
Matches are distributed among these distances:
391 32 0.07
392 23 0.05
393 34 0.08
394 268 0.63
395 29 0.07
396 9 0.02
397 32 0.07
398 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (391 bp):
GGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAACTTCAGA
GAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGAATTACTAGCTTCA
ATCTGCTCCACCTAATCTTAGGGAGATAAGATCTGAAATTATTCGGTCTATTCCACTGTAATATC
AGGAAGATAAGACCTGATGCAATCTACTCTACCGTAACTTCAAAGAGATAAGATCCTTTATTTTA
ATCCGTTCCACTGTAATCTCAAGGAAATAGGATTACTAGCTTAAATCTGCTCCACTGAAATCTCA
GGGACATAAGATCTCAAATTCTTCGATCTACTCCACTATAATATCAGGAAGATAAGACCTGATCC
A
Found at i:1449902 original size:438 final size:438
Alignment explanation
Indices: 1449305--1450341 Score: 1867
Period size: 438 Copynumber: 2.4 Consensus size: 438
1449295 GAAATTCTTC
* * *
1449305 GGTCTATTCCACTGTAATATCAGGAAGATAAGACCTGATGCAATCTACTCTACTGTAACTTCAGA
1 GGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
* * *
1449370 GAGATAAGATCCTTTATTTTAATCTGTTCCACTGTAATCTAAGGGAAATAGGATTACTAGCTTCA
66 GAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCA
* **
1449435 ATCTGCTCCGCTGTAATCTCAATGAGATAAGATTCACCATTTTTGATTAGCTCCACTATTGCTTA
131 ATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCATTTTTGATTAGCTCCACTATTGCTTA
1449500 GAGAGATAAGATCTGAAATTATTCGGTCTATTCCAGCGTAATATCTGGGAAGTAAGACCTGATGT
196 GAGAGATAAGATCTGAAATTATTCGGTCTATTCCAGCGTAATATCTGGGAAGTAAGACCTGATGT
1449565 GATCTACTCTACCGTAACTTCAAAGAGATAAGATCTTTTATTTTAATTCGTTCCACTGTAATCTC
261 GATCTACTCTACCGTAACTTCAAAGAGATAAGATCTTTTATTTTAATTCGTTCCACTGTAATCTC
1449630 AAGGAAATAGGATTGCTGGCTTAAATCTGCTTCATTGAAATCTCAGGGAGATAAGATTCACCGTT
326 AAGGAAATAGGATTGCTGGCTTAAATCTGCTTCATTGAAATCTCAGGGAGATAAGATTCACCGTT
1449695 TTCGATTAGCTCCACTATTTCTTAGAGAGATTAGACCTGGAATTCCTA
391 TTCGATTAGCTCCACTATTTCTTAGAGAGATTAGACCTGGAATTCCTA
*
1449743 GGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATTTACTCTACTGTAACTTCAGA
1 GGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
* * *
1449808 GAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGAATTATTGGCTTCA
66 GAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCA
* * * * *
1449873 ATCTGCTCCACCATAATCTTAGGGAGATAAGATTTACCATTTTTGATTAGCTCCACTATTTCTTA
131 ATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCATTTTTGATTAGCTCCACTATTGCTTA
1449938 GAGAGATAAGATCTGAAATTATTCGGTCTATTCCAGCGTAATATCTGGGAAGTAAGACCTGATGT
196 GAGAGATAAGATCTGAAATTATTCGGTCTATTCCAGCGTAATATCTGGGAAGTAAGACCTGATGT
1450003 GATCTACTCTACCGTAACTTCAAAGAGATAAGATCTTTTATTTTAATTCGTTCCACTGTAATCTC
261 GATCTACTCTACCGTAACTTCAAAGAGATAAGATCTTTTATTTTAATTCGTTCCACTGTAATCTC
1450068 AAGGAAATAGGATTGCTGGCTTAAATCTGCTTCATTGAAATCTCAGGGAGATAAGATTCACCGTT
326 AAGGAAATAGGATTGCTGGCTTAAATCTGCTTCATTGAAATCTCAGGGAGATAAGATTCACCGTT
1450133 TTCGATTAGCTCCACTATTTCTTAGAGAGATTAGACCTGGAATTCCTA
391 TTCGATTAGCTCCACTATTTCTTAGAGAGATTAGACCTGGAATTCCTA
* *
1450181 GGTCTATTCCACTGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGA
1 GGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
* *
1450246 GAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCTTTA
66 GAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCA
*
1450311 ATCTGCTCCGCTATAATCTCAGGAAGATAAG
131 ATCTGCTCCGCTATAATCTCAGGGAGATAAG
1450342 CTCTGAAATT
Statistics
Matches: 569, Mismatches: 30, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
438 569 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.34
Consensus pattern (438 bp):
GGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
GAGATAATATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCA
ATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCATTTTTGATTAGCTCCACTATTGCTTA
GAGAGATAAGATCTGAAATTATTCGGTCTATTCCAGCGTAATATCTGGGAAGTAAGACCTGATGT
GATCTACTCTACCGTAACTTCAAAGAGATAAGATCTTTTATTTTAATTCGTTCCACTGTAATCTC
AAGGAAATAGGATTGCTGGCTTAAATCTGCTTCATTGAAATCTCAGGGAGATAAGATTCACCGTT
TTCGATTAGCTCCACTATTTCTTAGAGAGATTAGACCTGGAATTCCTA
Found at i:1450283 original size:85 final size:85
Alignment explanation
Indices: 1450187--1450470 Score: 254
Period size: 85 Copynumber: 3.3 Consensus size: 85
1450177 CCTAGGTCTA
*
1450187 TTCCACTGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATA
1 TTCCACTGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
*
1450252 ATATCCTTTATTTTAATCCG
66 AGATCCTTTATTTTAATCCG
* * * * *** * ** *
1450272 TTCCACTGTAATCTCAGGGTAATAGGATTACTAGCTTTAATCTGCTCCGCTATAA-TCTCAG-GA
1 TTCCACTGTAATCTCAGGGAAATAAGA--CCT-GATGCGATCTACTCTACTGTAACT-TCAGAG-
* ** * **
1450335 AGATAAGCT-CTGAAATTTTTCAGTCTA
61 AGATAAGATCCT-TTA-TTTT-AATCCG
*
1450362 TTCCACTGTAATCTCA-GGAAGATAAGACTTGATGCGATCTACTCTACTGTAACTTCAGAGAGAT
1 TTCCACTGTAATCTCAGGGAA-ATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGAT
1450426 AAGATCCTTTATTTTAATCTCG
65 AAGATCCTTTATTTTAATC-CG
*
1450448 -TCCACTGTAATCTCAGAGAAATA
1 TTCCACTGTAATCTCAGGGAAATA
1450471 GGATTACTAG
Statistics
Matches: 147, Mismatches: 38, Indels: 28
0.69 0.18 0.13
Matches are distributed among these distances:
85 46 0.31
86 7 0.05
87 33 0.22
88 30 0.20
89 7 0.05
90 24 0.16
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (85 bp):
TTCCACTGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATA
AGATCCTTTATTTTAATCCG
Found at i:1450397 original size:175 final size:175
Alignment explanation
Indices: 1450182--1450506 Score: 546
Period size: 175 Copynumber: 1.9 Consensus size: 175
1450172 GAATTCCTAG
*
1450182 GTCTATTCCACTGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAG
1 GTCTATTCCACTGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
* * * *
1450247 AGATAATATCCTTTATTTTAATC-CGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCTTTA
66 AGATAAGATCCTTTATTTTAATCTCG-TCCACTGTAATCTCAGAGAAATAGGATTACTAGCTTCA
1450311 ATCTGCTCCGCTATAATCTCAGGAAGATAAGCTCTGAAATTTTTCA
130 ATCTGCTCCGCTATAATCTCAGGAAGATAAGCTCTGAAATTTTTCA
*
1450357 GTCTATTCCACTGTAATCTCA-GGAAGATAAGACTTGATGCGATCTACTCTACTGTAACTTCAGA
1 GTCTATTCCACTGTAATCTCAGGGAA-ATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGA
1450421 GAGATAAGATCCTTTATTTTAATCTCGTCCACTGTAATCTCAGAGAAATAGGATTACTAGCTTCA
65 GAGATAAGATCCTTTATTTTAATCTCGTCCACTGTAATCTCAGAGAAATAGGATTACTAGCTTCA
* *
1450486 ATCTGCTTCGCTGTAATCTCA
130 ATCTGCTCCGCTATAATCTCA
1450507 AGGAGAGAAG
Statistics
Matches: 140, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
174 4 0.03
175 134 0.96
176 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.34
Consensus pattern (175 bp):
GTCTATTCCACTGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
AGATAAGATCCTTTATTTTAATCTCGTCCACTGTAATCTCAGAGAAATAGGATTACTAGCTTCAA
TCTGCTCCGCTATAATCTCAGGAAGATAAGCTCTGAAATTTTTCA
Found at i:1450582 original size:394 final size:394
Alignment explanation
Indices: 1449941--1450733 Score: 1173
Period size: 394 Copynumber: 2.0 Consensus size: 394
1449931 TTTCTTAGAG
* * *
1449941 AGATAAGATCTGAAATTATTCGGTCTATTCCAGCGTAATATCTGGGAAGTAAGACCTGATGTGAT
1 AGATAAGATCTGAAATTATTCAGTCTATTCCAGCGTAATATCTAGGAAGTAAGACCTGATGCGAT
*
1450006 CTACTCTACCGTAACTTCAAAGAGATAAGATCTTTTATTTTAATTCGTTCCACTGTAATCTCAAG
66 CTACTCTACCGTAACTTCAAAGAGATAAGATCCTTTATTTTAATTCGTTCCACTGTAATCTCAAG
* * * * * **
1450071 GAAATAGGATTGCTGGCTTAAATCTGCTTCATTGAAATCTCAGGGAGATAAGATTCACCGTTTTC
131 GAAATAGGATTACTAGCTTAAATCTGCTTCACTGAAATCTCAAGGAGAGAAGATTCACAATTTTC
* *
1450136 GATTAGCTCCACTATTTCTTAGAGAGATTAGACCTGGAATTCCTAGGTCTATTCCACTGTAATCT
196 GATTAGCTCCACTATTGCTTAGAGAGATAAGACCTGGAATTCCTAGGTCTATTCCACTGTAATCT
*
1450201 CAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAATATCCTTTATTTT
261 CAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTT
* **
1450266 AATCCGTTCCACTGTAATCTCAGGGTAATAGGATTACTAGCTTTAATCTGCTCCGCTATAATCTC
326 AATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTAGCTTTAATCTGCTCCGCTATAATCTC
1450331 AGGA
391 AGGA
* * * *
1450335 AGATAAGCTCTGAAATTTTTCAGTCTATTCCA-CTGTAATCTC-AGGAAGATAAGACTTGATGCG
1 AGATAAGATCTGAAATTATTCAGTCTATTCCAGC-GTAATATCTAGGAAG-TAAGACCTGATGCG
* *
1450398 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCG-TCCACTGTAATCTC
64 ATCTACTCTACCGTAACTTCAAAGAGATAAGATCCTTTATTTTAAT-TCGTTCCACTGTAATCTC
* * *
1450462 -AGAGAAATAGGATTACTAGCTTCAATCTGCTTCGCTGTAATCTCAAGGAGAGAAGATTCACAAT
128 AAG-GAAATAGGATTACTAGCTTAAATCTGCTTCACTGAAATCTCAAGGAGAGAAGATTCACAAT
* * * *
1450526 TTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCA-GTCTATTCCACTGT
192 TTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGACCTGGAATTCCT-AGGTCTATTCCACTGT
* *
1450590 AATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGGGATAAGATCCTTT
256 AATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTT
* * * *
1450655 ATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTTAATTTGCTCCGCTGTA
321 ATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTAGCTTTAATCTGCTCCGCTATA
*
1450720 ATCTCAGGG
386 ATCTCAGGA
1450729 AGATA
1 AGATA
1450734 GGATTACTGG
Statistics
Matches: 357, Mismatches: 37, Indels: 10
0.88 0.09 0.02
Matches are distributed among these distances:
393 8 0.02
394 345 0.97
395 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (394 bp):
AGATAAGATCTGAAATTATTCAGTCTATTCCAGCGTAATATCTAGGAAGTAAGACCTGATGCGAT
CTACTCTACCGTAACTTCAAAGAGATAAGATCCTTTATTTTAATTCGTTCCACTGTAATCTCAAG
GAAATAGGATTACTAGCTTAAATCTGCTTCACTGAAATCTCAAGGAGAGAAGATTCACAATTTTC
GATTAGCTCCACTATTGCTTAGAGAGATAAGACCTGGAATTCCTAGGTCTATTCCACTGTAATCT
CAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTT
AATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTAGCTTTAATCTGCTCCGCTATAATCTC
AGGA
Found at i:1450777 original size:44 final size:44
Alignment explanation
Indices: 1450665--1450767 Score: 170
Period size: 44 Copynumber: 2.3 Consensus size: 44
1450655 ATTTTCATCC
* * * *
1450665 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTTAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
1450709 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
1450753 GCTCCGCTGTAATCT
1 GCTCCGCTGTAATCT
1450768 TTTGGAGATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.33
Consensus pattern (44 bp):
GCTCCGCTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATTT
Found at i:1451165 original size:44 final size:46
Alignment explanation
Indices: 1451099--1451204 Score: 112
Period size: 44 Copynumber: 2.4 Consensus size: 46
1451089 ACCTGATGCG
* * * *
1451099 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTTA
1 ATCTGCTCCACTGTAATCTTCAGAGAAATAAGATTACTTTATTTTA
* * *
1451143 ATCT-CGTCCACTGTAATC-TCAGAGAAATAGGATTAGTTTATTTTC
1 ATCTGC-TCCACTGTAATCTTCAGAGAAATAAGATTACTTTATTTTA
1451188 ATCTGCTCCACTGTAAT
1 ATCTGCTCCACTGTAAT
1451205 ATCAACAAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.02
44 25 0.48
45 25 0.48
46 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (46 bp):
ATCTGCTCCACTGTAATCTTCAGAGAAATAAGATTACTTTATTTTA
Found at i:1451198 original size:45 final size:45
Alignment explanation
Indices: 1451134--1451222 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
1451124 GATAAGATCC
* *
1451134 TTTATTTTAATCTCGTCCACTGTAATCTCAGA-GAAATAGGATTAG
1 TTTATTTTAATCTCGTCCACTGTAATATCA-ACAAAATAGGATTAG
*
1451179 TTTATTTTCATCT-GCTCCACTGTAATATCAACAAAATAGGATTA
1 TTTATTTTAATCTCG-TCCACTGTAATATCAACAAAATAGGATTA
1451223 CTGGCTTCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
44 2 0.05
45 37 0.95
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (45 bp):
TTTATTTTAATCTCGTCCACTGTAATATCAACAAAATAGGATTAG
Found at i:1451262 original size:44 final size:44
Alignment explanation
Indices: 1451214--1451353 Score: 199
Period size: 44 Copynumber: 3.2 Consensus size: 44
1451204 TATCAACAAA
*
1451214 ATAGGATTACTGGCTTCAATTTTCTCCGCTGTAATCTCAGGGAG
1 ATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTCAGGGAG
* * * *
1451258 ATAGGTTTACTGGGTTTAATTTGCTCCGCTATAATCTCAGGGAG
1 ATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTCAGGGAG
* * *
1451302 ATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAG
1 ATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTCAGGGAG
*
1451346 ATAAGATT
1 ATAGGATT
1451354 CACCGTCTTC
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 83 1.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (44 bp):
ATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTCAGGGAG
Found at i:1451419 original size:54 final size:54
Alignment explanation
Indices: 1451330--1451437 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 54
1451320 ATCTGCTCCG
* * *
1451330 CTGTAATCTTATGGAGATAAGATTCACCGTCTTCGATCT-GCTCCACTATTGCTT
1 CTGTAATCTCAGGGAGATAAGATTCACCATCTTCGAT-TAGCTCCACTATTGCTT
*
1451384 CTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTT
1 CTGTAATCTCAGGGAGATAAGATTCACCATCTTCGATTAGCTCCACTATTGCTT
1451438 AGAGAGATAA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
53 1 0.02
54 48 0.98
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (54 bp):
CTGTAATCTCAGGGAGATAAGATTCACCATCTTCGATTAGCTCCACTATTGCTT
Found at i:1451767 original size:51 final size:51
Alignment explanation
Indices: 1451707--1452008 Score: 604
Period size: 51 Copynumber: 5.9 Consensus size: 51
1451697 AATCTGAGGG
1451707 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAACAGT
1 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAACAGT
1451758 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAACAGT
1 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAACAGT
1451809 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAACAGT
1 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAACAGT
1451860 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAACAGT
1 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAACAGT
1451911 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAACAGT
1 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAACAGT
1451962 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAA
1 AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAA
1452009 GGTCCTTTAT
Statistics
Matches: 251, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 251 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (51 bp):
AGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGGTAACAGT
Found at i:1452256 original size:44 final size:44
Alignment explanation
Indices: 1452224--1452335 Score: 179
Period size: 44 Copynumber: 2.5 Consensus size: 44
1452214 TATCAACAAA
1452224 ATAGGATTACTGGCTTCAATTTTCTCCGCTGTAATCTCAGGGAG
1 ATAGGATTACTGGCTTCAATTTTCTCCGCTGTAATCTCAGGGAG
* * * * *
1452268 ATAGGTTTACTGGGTTTAATTTGCTCCGCTATAATCTCAGGGAG
1 ATAGGATTACTGGCTTCAATTTTCTCCGCTGTAATCTCAGGGAG
1452312 ATAGGATTACTGGCTTCAATTTTC
1 ATAGGATTACTGGCTTCAATTTTC
1452336 GATTAGCTCC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 59 1.00
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (44 bp):
ATAGGATTACTGGCTTCAATTTTCTCCGCTGTAATCTCAGGGAG
Found at i:1452592 original size:219 final size:223
Alignment explanation
Indices: 1452255--1452720 Score: 654
Period size: 219 Copynumber: 2.1 Consensus size: 223
1452245 TTCTCCGCTG
* * * * * * *
1452255 TAATCTCAGGGAGATAGGTTTACTGGGTTTAATTTGCTCCGCTATAATCTCAGGGAGATAGGATT
1 TAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTATAATCTCAGGGAGAGAAGATT
* *
1452320 ACTGGCTTCAATTTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCTTCGGTC
66 A-T-GCTACAATTTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCTTCAGTC
* * * *
1452385 TATTCCACTGGAATCTCAGGGAGTTTAGACCTGATGCAATCTACTCTACTGTAAATTCAGAGAGA
129 TATTCCACTAGAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAAATTAAGAGAGA
* *
1452450 TAAGATCCTTTATTTTAATCTGTTCCACTA
194 TAAGATCCTTTATTCTAATCCGTTCCACTA
* *
1452480 TAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGA-T
1 TAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTATAATCTCAGGGAGAGAAGATT
* * *
1452544 -T-C-ACAATTTTTGATTTGCTCCACTATTGCTTAG-GTAGATAAGATCTGGATTTCTTCAGTCT
66 ATGCTACAATTTTCGATTAGCTCCACTATTGCTTAGAG-AGATAAGATCTGGAATTCTTCAGTCT
* * *
1452605 ATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGAT
130 ATTCCACTAGAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAAATTAAGAGAGAT
*
1452670 AAGATCCTTTATTCTAATCCGTTCCACTG
195 AAGATCCTTTATTCTAATCCGTTCCACTA
1452699 TAATCTCAGGGAAATAGGATTA
1 TAATCTCAGGGAAATAGGATTA
1452721 TCAGGGAAAT
Statistics
Matches: 215, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
218 1 0.00
219 157 0.73
220 1 0.00
222 1 0.00
224 1 0.00
225 54 0.25
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (223 bp):
TAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTATAATCTCAGGGAGAGAAGATT
ATGCTACAATTTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCTTCAGTCTA
TTCCACTAGAATCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTGTAAATTAAGAGAGATA
AGATCCTTTATTCTAATCCGTTCCACTA
Found at i:1452726 original size:17 final size:17
Alignment explanation
Indices: 1452704--1452737 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1452694 CACTGTAATC
1452704 TCAGGGAAATAGGATTA
1 TCAGGGAAATAGGATTA
1452721 TCAGGGAAATAGGATTA
1 TCAGGGAAATAGGATTA
1452738 CTTGCTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.29, T:0.24
Consensus pattern (17 bp):
TCAGGGAAATAGGATTA
Found at i:1452792 original size:44 final size:44
Alignment explanation
Indices: 1452721--1452844 Score: 149
Period size: 44 Copynumber: 2.8 Consensus size: 44
1452711 AATAGGATTA
* * * * *
1452721 TCAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATC
1 TCAGGGAGATAGGATTACTGGCATCAATCTGCTCCGCTGTAATC
1452765 TCAGGGAGATAGGATTACTGGCATCAATCTGCTCCGCTGTAATC
1 TCAGGGAGATAGGATTACTGGCATCAATCTGCTCCGCTGTAATC
* * * * *
1452809 TTATGGAGATAAGATTCACTGTCTTCAATCTGCTCC
1 TCAGGGAGATAGGATT-ACTGGCATCAATCTGCTCC
1452845 ACTATTGCTC
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
44 52 0.75
45 17 0.25
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (44 bp):
TCAGGGAGATAGGATTACTGGCATCAATCTGCTCCGCTGTAATC
Found at i:1452861 original size:44 final size:43
Alignment explanation
Indices: 1452721--1452867 Score: 116
Period size: 44 Copynumber: 3.3 Consensus size: 43
1452711 AATAGGATTA
* * * * * * *
1452721 TCAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTGTAATC
1 TCAGGGAGATAAGATTACTGGCATCAATCTGCTCCAC-GTAATC
* *
1452765 TCAGGGAGATAGGATTACTGGCATCAATCTGCTCCGCTGTAATC
1 TCAGGGAGATAAGATTACTGGCATCAATCTGCTCCAC-GTAATC
* * * * *
1452809 TTATGGAGATAAGATTCACTGTCTTCAATCTGCTCCAC-TATTGC
1 TCAGGGAGATAAGATT-ACTGGCATCAATCTGCTCCACGTAAT-C
*
1452853 TCAGGGAGACAAGAT
1 TCAGGGAGATAAGAT
1452868 CTGGAACTAT
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
43 3 0.03
44 65 0.76
45 18 0.21
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (43 bp):
TCAGGGAGATAAGATTACTGGCATCAATCTGCTCCACGTAATC
Found at i:1453020 original size:49 final size:46
Alignment explanation
Indices: 1452979--1453065 Score: 124
Period size: 44 Copynumber: 1.9 Consensus size: 46
1452969 CGCTCTACTG
*
1452979 TAATCTCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCG--CTA
1 TAATCTCAGGCAAATAGGATTACTGGCTTCAATCTGCTCCGCTCTA
* * *
1453023 TAATCTCGGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCT
1 TAATCTCAGGCAAATAGGATTACTGGCTTCAATCTGCTCCGCT
1453066 GTAATCTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (46 bp):
TAATCTCAGGCAAATAGGATTACTGGCTTCAATCTGCTCCGCTCTA
Found at i:1453194 original size:263 final size:262
Alignment explanation
Indices: 1452480--1454090 Score: 1415
Period size: 263 Copynumber: 6.1 Consensus size: 262
1452470 TGTTCCACTA
* * * * *
1452480 TAATCTAAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGAGAAGATT
1 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATT
* * * * * * * ** * *
1452545 CACAATTTTTGATTTGCTCCACTATTGCTTAGGTAGATAAGATCTGGATTTCTTCAGTCTATTCC
66 CACTA-TCTTCATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTCGGTCTATTCC
* *
1452610 ACTATAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGAT
130 ACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAAAT
* *
1452675 CCTTTATTCTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTATCAGGGAAATAGGATTACT
195 CCTTTATTTTCATCCGTTCCACTGTAATCTCAGGGAAATAGGATTA-C-------T--G------
*
1452740 TGCTTCAATTTTCTCCGCTG
244 -GCTTCAATTTGCTCCGCTG
*
1452760 TAATCTCAGGGAGATAGGATTACTGGCATCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATT
1 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATT
* *
1452825 CACTGTCTTCAATCTGCTCCACTATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCC
66 CACTATCTTC-ATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTCGGTCTATTCC
*
1452890 ACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAAAT
130 ACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAAAT
* * *
1452955 CCTTTATTTTCATCCGCTCTACTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATTTGCTCCG
195 CCTTTATTTTCATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGCTCCG
*
1453020 CTA
260 CTG
* *
1453023 TAATCTCGGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTTTGGAGATAAGATT
1 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATT
* * *
1453088 CACCATCTTCGATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTCTTCGGCCTATTCC
66 CACTATCTTC-ATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTCGGTCTATTCC
* * * *
1453153 ACAGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATAT
130 ACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAAAT
* * * * * * *
1453218 CCTTTATTTTAATCCGTTCAACTGTAATCTCAGGGTAATAGGATTACTAGCATT-AATCTACTCT
195 CCTTTATTTTCATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAATTTGCTCC
* *
1453282 GTTA
259 GCTG
**** ** * * * *
1453286 TAATCTCAGGGAGATCA-GATTCACCATTTTTTAT-TAGCTCCAC--TATTGCTTAGGGATATAA
1 TAATCTCAGGGAGAT-AGGATT-ACTGGCTTCAATCT-GCTCCGCTGTAAT-CTTATGGAGATAA
* * * * ** * * * * *
1453347 GA-TCTAGATTTATTCAGTTTATTCCGCTGTAAT-CTCATGG-AGATAAGACCT-G----ATGCG
62 GATTC-A-CTATCTTCA-TCTGCTCCAC--TATTGCTCA-GGAAGACAAGATCTGGAACTATTCG
* * * * * * * * * *
1453404 ATCTACTCTACTGTAA-CTTTAGAGAGATAAGATTCTTTATTTTC-ATCTACTCCACTATAA-TA
121 GTCTATTCCACTGTAATC-TCAGGGAGATAAGA--CCTGA--TGCGATCTACTCTACTGTAACT-
* * * * * * ** ** * * *
1453466 TCAGGGAAATAGGATTAC-TT-GCTTCAAT-TTTCTCCGCTGTAATCTCAGGGAGATAGGATTAT
180 TAAGAGAGATA-AAATCCTTTATTTTC-ATCCGT-TCCACTGTAATCTCAGGGAAATAGGATTAC
* *
1453528 TGGGTTCAATCTGCTCCGCTG
242 TGGCTTCAATTTGCTCCGCTG
*
1453549 TAATCTCAGGGAGATAGGATTACTGGCATCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATT
1 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATT
* *
1453614 CACTGTCTTCAATCTGCTCCACTATTGCTCAGGGAGACAAGATCTGGAACTATTCGGTCTATTCC
66 CACTATCTTC-ATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTCGGTCTATTCC
*
1453679 ACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGAT
130 ACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAAAT
* * * *
1453744 TCTTTATTTTCATCCGTTCCACTGTAATCTTAGGAAAATAGGGTTACTGGCTTCAATTTGCTCCG
195 CCTTTATTTTCATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGCTCCG
1453809 CTG
260 CTG
* * * * * * ** *
1453812 TAATCTCAGGGAGATAAGA--CCT-GATGCGATCTACTCTACTGTAA-CTTAAGAGAGATAAGAT
1 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATG-GAGATAAGAT
** * * * * * * * * * ** * *
1453873 TCTTTATTTTCATCCGTTCCACTGTAAT-CTTAGGAAAATAGGGTTACTGG--C--TTCAATTTG
65 TCACTATCTTCATCTGCTCCAC--TATTGCTCAGGAAGACA-AGAT-CTGGAACTATTCGGTCTA
* *
1453933 CTCCGCTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATA
126 TTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATA
* * * * *
1453998 AGATTCTTTATTTTCATCCGTTCCACTGTAATCTTAGGAAAATAGGGTTACTGGCTTCAATTTGC
191 AAATCCTTTATTTTCATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGC
1454063 TCCGCTG
256 TCCGCTG
*
1454070 TAATCTCAGGGAGATAAGATT
1 TAATCTCAGGGAGATAGGATT
1454091 CACCATTTTC
Statistics
Matches: 1092, Mismatches: 191, Indels: 116
0.78 0.14 0.08
Matches are distributed among these distances:
258 159 0.15
259 15 0.01
260 71 0.07
261 20 0.02
262 46 0.04
263 473 0.43
264 43 0.04
265 13 0.01
266 34 0.03
267 1 0.00
270 1 0.00
272 1 0.00
279 4 0.00
280 211 0.19
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (262 bp):
TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTATGGAGATAAGATT
CACTATCTTCATCTGCTCCACTATTGCTCAGGAAGACAAGATCTGGAACTATTCGGTCTATTCCA
CTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAAATC
CTTTATTTTCATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATTTGCTCCGC
TG
Found at i:1453536 original size:44 final size:44
Alignment explanation
Indices: 1453461--1453633 Score: 213
Period size: 44 Copynumber: 3.9 Consensus size: 44
1453451 TACTCCACTA
* * * *
1453461 TAATATCAGGGAAATAGGATTACTT-GCTTCAATTTTCTCCGCTG
1 TAATCTCAGGGAGATAGGATTA-TTGGCTTCAATCTGCTCCGCTG
*
1453505 TAATCTCAGGGAGATAGGATTATTGGGTTCAATCTGCTCCGCTG
1 TAATCTCAGGGAGATAGGATTATTGGCTTCAATCTGCTCCGCTG
* *
1453549 TAATCTCAGGGAGATAGGATTACTGGCATCAATCTGCTCCGCTG
1 TAATCTCAGGGAGATAGGATTATTGGCTTCAATCTGCTCCGCTG
* * * * *
1453593 TAATCTTATGGAGATAAGATTCACTGTCTTCAATCTGCTCC
1 TAATCTCAGGGAGATAGGATT-ATTGGCTTCAATCTGCTCC
1453634 ACTATTGCTC
Statistics
Matches: 114, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
43 2 0.02
44 95 0.83
45 17 0.15
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (44 bp):
TAATCTCAGGGAGATAGGATTATTGGCTTCAATCTGCTCCGCTG
Found at i:1453650 original size:44 final size:43
Alignment explanation
Indices: 1453461--1453656 Score: 187
Period size: 44 Copynumber: 4.5 Consensus size: 43
1453451 TACTCCACTA
* * * * * *
1453461 TAATATCAGGGAAATAGGATTACTTGCTTCAATTTTCTCCGCTG
1 TAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCGC-G
* * *
1453505 TAATCTCAGGGAGATAGGATTATTGGGTTCAATCTGCTCCGCTG
1 TAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCGC-G
* *
1453549 TAATCTCAGGGAGATAGGATTACTGGCATCAATCTGCTCCGCTG
1 TAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCGC-G
* * * *
1453593 TAATCTTATGGAGATAAGATTCACTGTCTTCAATCTGCTCCAC-
1 TAATCTCAGGGAGATAAGATT-ACTGGCTTCAATCTGCTCCGCG
* *
1453636 TATTGCTCAGGGAGACAAGAT
1 TAAT-CTCAGGGAGATAAGAT
1453657 CTGGAACTAT
Statistics
Matches: 130, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
43 3 0.02
44 109 0.84
45 18 0.14
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (43 bp):
TAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCGCG
Found at i:1453827 original size:129 final size:129
Alignment explanation
Indices: 1453680--1454088 Score: 818
Period size: 129 Copynumber: 3.2 Consensus size: 129
1453670 GTCTATTCCA
1453680 CTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATT
1 CTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATT
1453745 CTTTATTTTCATCCGTTCCACTGTAATCTTAGGAAAATAGGGTTACTGGCTTCAATTTGCTCCG
66 CTTTATTTTCATCCGTTCCACTGTAATCTTAGGAAAATAGGGTTACTGGCTTCAATTTGCTCCG
1453809 CTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATT
1 CTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATT
1453874 CTTTATTTTCATCCGTTCCACTGTAATCTTAGGAAAATAGGGTTACTGGCTTCAATTTGCTCCG
66 CTTTATTTTCATCCGTTCCACTGTAATCTTAGGAAAATAGGGTTACTGGCTTCAATTTGCTCCG
1453938 CTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATT
1 CTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATT
1454003 CTTTATTTTCATCCGTTCCACTGTAATCTTAGGAAAATAGGGTTACTGGCTTCAATTTGCTCCG
66 CTTTATTTTCATCCGTTCCACTGTAATCTTAGGAAAATAGGGTTACTGGCTTCAATTTGCTCCG
1454067 CTGTAATCTCAGGGAGATAAGA
1 CTGTAATCTCAGGGAGATAAGA
1454089 TTCACCATTT
Statistics
Matches: 280, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 280 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (129 bp):
CTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATT
CTTTATTTTCATCCGTTCCACTGTAATCTTAGGAAAATAGGGTTACTGGCTTCAATTTGCTCCG
Found at i:1455422 original size:175 final size:175
Alignment explanation
Indices: 1455216--1455578 Score: 523
Period size: 175 Copynumber: 2.1 Consensus size: 175
1455206 ACTATTTCTT
** * *
1455216 AGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCACTGTAATCTCAAG-GGGATAAGACCTGAT
1 AGGGAGATAAGATCTAAAATTCTTAGGTCTATTCCACTGTAATCTCAAGAAGG-TAAAACCTGAT
* *
1455280 GCGATCTACTCTACTGTAACTTCAGAGAGATAATATCATTTACTTTAATC-CATTCCACTGTAAT
65 GCGATCTACTATACTGTAACTTCAGAGAGATAAGATCATTTACTTTAATCTC-TTCCACTGTAAT
* *
1455344 CTCAGGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTATAATCTC
129 CTCAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAATCTC
* * * *
1455391 AGGGAGATAAGTTCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGAAGGTAAAACTTGTTG
1 AGGGAGATAAGATCTAAAATTCTTAGGTCTATTCCACTGTAATCTCAAGAAGGTAAAACCTGATG
* * *
1455456 CGATCTACTATACTGTAACTTCAGAGTGATAAGATCCTTTATTTTAATCTCTTCCACTGTAATCT
66 CGATCTACTATACTGTAACTTCAGAGAGATAAGATCATTTACTTTAATCTCTTCCACTGTAATCT
* * * *
1455521 CAGGGAAATAGGATTACTAGCTTCAATCTTCTCTGCTGTAATCTC
131 CAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAATCTC
1455566 AGGGAGATAAGAT
1 AGGGAGATAAGAT
1455579 TCACCATTTT
Statistics
Matches: 166, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
175 163 0.98
176 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (175 bp):
AGGGAGATAAGATCTAAAATTCTTAGGTCTATTCCACTGTAATCTCAAGAAGGTAAAACCTGATG
CGATCTACTATACTGTAACTTCAGAGAGATAAGATCATTTACTTTAATCTCTTCCACTGTAATCT
CAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAATCTC
Found at i:1455516 original size:394 final size:394
Alignment explanation
Indices: 1454997--1455797 Score: 1241
Period size: 394 Copynumber: 2.0 Consensus size: 394
1454987 ACTATTTCTT
** * *
1454997 AGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCACTGTAATCTCAAGGGGATAAGACCTGATG
1 AGGGAGATAAGATCTAAAATTCTTAGGTCTATTCCACTGTAATCTCAAGAGGATAAAACCTGATG
*
1455062 CGATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
66 CGATCTACTATACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
* *
1455127 CAAGGAAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTTAGAAAGATAAGATTCACCAT
131 CAAGGAAATAGGATTACTAGCTTCAATCTGCTCTGCCGTAATCTCAGAAAGATAAGATTCACCAT
*
1455192 TTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGATCTGGAATTCTT-AGGTCTATTCCACTGT
196 TTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCA-GTCTATTCCACTGT
* * *
1455256 AATCTCA-AGGGGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCATT
260 AATCTCAGA-GAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCATT
* *
1455320 TACTTTAATCCATTCCACTGTAATCTCAGGGTAATAGGATTACTAGCTTTAACCTGCTCCGCTAT
324 TACTTTAATCCATTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTAT
1455385 AATCTC
389 AATCTC
* * * *
1455391 AGGGAGATAAGTTCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGAAGG-TAAAACTTGTT
1 AGGGAGATAAGATCTAAAATTCTTAGGTCTATTCCACTGTAATCTCAAG-AGGATAAAACCTGAT
*
1455455 GCGATCTACTATACTGTAACTTCAGAGTGATAAGATCCTTTATTTTAATCTC-TTCCACTGTAAT
65 GCGATCTACTATACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATC-CGTTCCACTGTAAT
* * * **
1455519 CTCAGGGAAATAGGATTACTAGCTTCAATCTTCTCTGCTGTAATCTCAGGGAGATAAGATTCACC
129 CTCAAGGAAATAGGATTACTAGCTTCAATCTGCTCTGCCGTAATCTCAGAAAGATAAGATTCACC
* *
1455584 ATTTTTGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCTATTCCACTG
194 ATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCAGTCTATTCCACTG
*
1455649 TAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTT
259 TAATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCATT
* * * * * * *
1455714 TATTTTAATTCATTCCACTGTAATCTCAGGGAAATAGGATTGCTAGCTTCAATCTGCTTCGTTCT
324 TACTTTAATCCATTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTAT
1455779 AATCTC
389 AATCTC
1455785 AGGGAGATAAGAT
1 AGGGAGATAAGAT
1455798 TCACCATTTT
Statistics
Matches: 369, Mismatches: 34, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
394 364 0.99
395 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (394 bp):
AGGGAGATAAGATCTAAAATTCTTAGGTCTATTCCACTGTAATCTCAAGAGGATAAAACCTGATG
CGATCTACTATACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCT
CAAGGAAATAGGATTACTAGCTTCAATCTGCTCTGCCGTAATCTCAGAAAGATAAGATTCACCAT
TTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGAATTCTTCAGTCTATTCCACTGTA
ATCTCAGAGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCATTTA
CTTTAATCCATTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAACCTGCTCCGCTATAA
TCTC
Found at i:1455876 original size:268 final size:268
Alignment explanation
Indices: 1455559--1456345 Score: 932
Period size: 268 Copynumber: 3.0 Consensus size: 268
1455549 TTCTCTGCTG
* *
1455559 TAATCTCAGGGAGATAAGATTCACCATTTTTGATTAGCTCCACTATTGCTTAGGGAGATAAGATC
1 TAATCTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATC
* * *
1455624 TGGATTTCTTCA-GTCTATTCCACTGTAATCTC-AGAGAGATAAGACCTGATGCGATCTACTCTA
66 TGGAATTCCT-AGGTCTATTCCACTGCAATCTCAAG-GAGATAAGACCTGATGCGATCTACTCTA
1455687 CTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCATTCCACTGTAATCTCAGGGAAATAGG
129 CTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCATTCCACTGTAATCTCAGGGAAATAGG
* *
1455752 ATTGCTAGCTTCAATCTGCT-TCGTTC-TAATCTCAGGGAGATAAGATTCACCATTTTCGATTAG
194 ATTACTAGCTTCAATCTGCTCT-G-CCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAG
1455815 CCTGCTCTGTTA
257 CCTGCTCTGTTA
1455827 TAATCTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATC
1 TAATCTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATC
1455892 TGGAATTCCTAGGTCTATTCCACTGCAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACT
66 TGGAATTCCTAGGTCTATTCCACTGCAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACT
1455957 ATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCATTCCACTGTAATCTCAGGGAAATAGGAT
131 ATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCATTCCACTGTAATCTCAGGGAAATAGGAT
*
1456022 TACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAG-CT-
196 TACTAGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCCTG
**
1456085 C-C-ACTA
261 CTCTGTTA
* * * * * * * * * * * *
1456091 T-TTCTTAGAGAGATAAGATCTGGA--ATTCCTAGGTCTA-TTCCACTGTAAT-CTCAAGGAGAT
1 TAATCTCAGGGAGAGAAGAT-T-CACCATT-TTCGAT-TAGCTCCAC--TATTGCTTAGGGAGAT
* * * * * ** * ***
1456151 AAGACCT-G-A-TGC--GATCTACTCTACTATAA-CTTC-AGAGAGATAAGATCCTTTATTTTAA
60 AAGATCTGGAATTCCTAGGTCTATTCCACTGCAATC-TCAAG-GAGATAAGA-CC-TGA-TGCGA
* * * * *
1456209 T-TACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCTACTGTAATCTCAG
120 TCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCATTCCACTGTAATCTCAG
*
1456273 GGAAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTT
185 GGAAATAGGATTACTAGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTT
*
1456338 TGATTAGC
250 CGATTAGC
1456346 TCCACTATTG
Statistics
Matches: 464, Mismatches: 39, Indels: 37
0.86 0.07 0.07
Matches are distributed among these distances:
259 3 0.01
260 23 0.05
261 2 0.00
262 133 0.29
263 21 0.05
264 13 0.03
265 19 0.04
266 4 0.01
267 4 0.01
268 239 0.52
269 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (268 bp):
TAATCTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTAGGGAGATAAGATC
TGGAATTCCTAGGTCTATTCCACTGCAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACT
ATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCATTCCACTGTAATCTCAGGGAAATAGGAT
TACTAGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCCTG
CTCTGTTA
Found at i:1456000 original size:487 final size:478
Alignment explanation
Indices: 1455391--1456546 Score: 1561
Period size: 487 Copynumber: 2.4 Consensus size: 478
1455381 CTATAATCTC
* ** * * * * * *
1455391 AGGGAGATAAGTTCTAAAATTCTTCGGTCTATTCCACTGTAATCTCAAGAAGGTAAAACTTGTTG
1 AGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATG
* *
1455456 CGATCTACTATACTGTAACTTCAGAGTGATAAGATCCTTTATTTTAATCTCTTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAAT-TCTTCCACTGTAATCT
*
1455521 CAGGGAAATAGGATTACTAGCTTCAATCTTCTCTGCTGTAATCTCAGGGAGATAAGATTCACCAT
130 CAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCAT
* * * *
1455586 TTTTGATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCA-GTCTATTCCACTGT
195 TTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCCT-AGGTCTATTCCACTGT
1455650 AATCTC-AGAGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTT
259 AATCTCAAG-GAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTT
* * * *
1455714 TATTTTAATTCATTCCACTGTAA-TCTCAGGGAAATAGGAT-TGCTAGCTTCAATCTGCTTCGT-
323 TATTTTAATT-ACTCCACTGTAACT-TCAGAGAAATAAGATCT-CTA-CTTCAATCCG-TTC-TA
* ** **
1455776 TCTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCCTGCTCTGTTATAATCTCAGGGAGA
382 TCTAATCTCAGGGAAATAAGATT-ACCAGCTTC-A--A-CCTGCTCTGCCATAATCTCAGGGAGA
1455841 GAAGATTCACCATTTTCGATTAGCTCCACTATTGCTT
442 GAAGATTCACCATTTTCGATTAGCTCCACTATTGCTT
* *
1455878 AGGGAGATAAGATCTGGAATTCCTAGGTCTATTCCACTGCAATCTCAAGGAGATAAGACCTGATG
1 AGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATG
*
1455943 CGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCATTCCACTGTAATCT
66 CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTC-TTCCACTGTAATCT
* *
1456008 CAGGGAAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCAT
130 CAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCAT
*
1456073 TTTCGATTAGCTCCACTATTTCTTAGAGAGATAAGATCTGGAATTCCTAGGTCTATTCCACTGTA
195 TTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCCTAGGTCTATTCCACTGTA
1456138 ATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTA
260 ATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTA
* ** * * * *
1456203 TTTTAATTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCTACTGTAAT
325 TTTTAATTACTCCACTGTAACTTCAGAGAAATAAGAT-CTCTACTTCAATCCGTTCTA-TCTAAT
* ** * * *
1456268 CTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACC
388 CTCAGGGAAATAAGATTACCAGCTTCAACCTGCTCTGCCATAATCTCAGGGAGAGAAGATTCACC
*
1456333 ATTTTTGATTAGCTCCACTATTGCTT
453 ATTTTCGATTAGCTCCACTATTGCTT
* * *
1456359 AGGGAGATAAGATCTGGATTTCTTCA-GTCAATTCCACTGTAATC-CTAGGGAGATAAGACCTGA
1 AGGGAGATAAGATCTGGAATTCTT-AGGTCTATTCCACTGTAATCTC-AAGGAGATAAGACCTGA
* * * *
1456422 TGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCATTTACTTTAATCCGTTCCACTGTAAT
64 TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTC-TTCCACTGTAAT
* * * * * *
1456487 CTCAGGGTAATATGATTACTAGCTTTAACCTGCTCCGCTATAATCTCAGGGAGATAAGAT
128 CTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGAT
1456547 CTAAAATTCT
Statistics
Matches: 595, Mismatches: 64, Indels: 26
0.87 0.09 0.04
Matches are distributed among these distances:
480 1 0.00
481 222 0.37
482 2 0.00
484 2 0.00
485 8 0.01
486 51 0.09
487 306 0.51
488 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (478 bp):
AGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATG
CGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTCTTCCACTGTAATCTC
AGGGAAATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATT
TTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCCTAGGTCTATTCCACTGTAA
TCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTAT
TTTAATTACTCCACTGTAACTTCAGAGAAATAAGATCTCTACTTCAATCCGTTCTATCTAATCTC
AGGGAAATAAGATTACCAGCTTCAACCTGCTCTGCCATAATCTCAGGGAGAGAAGATTCACCATT
TTCGATTAGCTCCACTATTGCTT
Found at i:1456210 original size:219 final size:219
Alignment explanation
Indices: 1453938--1456210 Score: 2333
Period size: 219 Copynumber: 10.4 Consensus size: 219
1453928 ATTTGCTCCG
* * *
1453938 CTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTAAGAGAGATAAGATT
1 CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* * * * * * * *
1454003 CTTTATTTTCATCCGTTCCACTGTAATCTTAGGAAAATAGGGTTACTGGCTTCAATTTGCTCCGC
66 CTTTATTTTAATTCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGC
* * *
1454068 TGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTCGGGAGATATGA
131 CGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGA
* *
1454133 TATGGAATTCTTCGGTCTATTCCA
196 TCTGGAATTCTTAGGTCTATTCCA
* * *
1454157 CTGTAATCTCAAGCAGATAAGA-CTAGATGCAATCTACTCTACTATAACTTCAGAGAGATAAGAT
1 CTGTAATCTCAAGGAGATAAGACCT-GATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGAT
* *
1454221 CCTTTATTTTAATCCGTTCCACTGTAATCT-AGGGGAAATAGGATTACTAGCTTCAATCTGCTCC
65 CCTTTATTTTAATTCGTTCCACTGTAATCTCA-GGGAAATAGGATTACTAGCTTCAATCTGCTCT
** ** * *
1454285 GCTATAATCTCAATGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTGCTTATGGAGATAA
129 GCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAA
* * *
1454350 GATCTGGAATTCTTCGGTGTATTCTA
194 GATCTGGAATTCTTAGGTCTATTCCA
* * * *
1454376 CTATAATCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGCGATAAGATC
1 CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* * *
1454441 CTTTATTTTAATCCGTTCCACTGTAATCTCAAGGAAATAGGATTACTGGCTTCAATCTGCTCTGC
66 CTTTATTTTAATTCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGC
* **
1454506 CGTAATCTTAGAAAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGA
131 CGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGA
1454571 TCTGGAATTCTTAGGTCTATTCCA
196 TCTGGAATTCTTAGGTCTATTCCA
** * * *
1454595 GC-GTAATCTCTGGGGGGTAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGAT
1 -CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGAT
* *
1454659 CCTTTATTTTAATTCATTCCACTGTAATCTCAGGGAAATAGGATTGCTAGCTTCAATCTGCT-TC
65 CCTTTATTTTAATTCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCT-
**
1454723 GTTGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAA
129 GCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAA
*
1454788 GATCTGGAATTCTTCGGTCTATTCCA
194 GATCTGGAATTCTTAGGTCTATTCCA
* * * * * *
1454814 CTGGAATCTCAGGGAGTTCAGACCTGATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATC
1 CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* * *
1454879 CTTTATTTTAA-TCTGTTCCACTGTAATCTAAAGGAAATAGGATTACTGGCTTCAATCTGCTCTG
66 CTTTATTTTAATTC-GTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCTG
* **
1454943 CCGTAATCTTAGAAAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAG
130 CCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAG
1455008 ATCTGGAATTCTTAGGTCTATTCCA
195 ATCTGGAATTCTTAGGTCTATTCCA
* *
1455033 CTGTAATCTCAAGGGGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGCGATAAGATC
1 CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* * *
1455098 CTTTATTTTAATCCGTTCCACTGTAATCTCAAGGAAATAGGATTACTGGCTTCAATCTGCTCTGC
66 CTTTATTTTAATTCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGC
* **
1455163 CGTAATCTTAGAAAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGA
131 CGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGA
1455228 TCTGGAATTCTTAGGTCTATTCCA
196 TCTGGAATTCTTAGGTCTATTCCA
* *
1455252 CTGTAATCTCAAGGGGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATC
1 CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* * * * * * * *
1455317 ATTTACTTTAATCCATTCCACTGTAATCTCAGGGTAATAGGATTACTAGCTTTAACCTGCTCCGC
66 CTTTATTTTAATTCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGC
** ** * * * * * * * *
1455382 TATAATCTCAGGGAGATAAG-TTCTAAAATTCTTCGGTCTA-TTCCACTGTAATCTCAAGAAGGT
131 CGTAATCTCAGGGAGATAAGATTC-ACCATT-TTCGAT-TAGCTCCACTAT-TTCTTAGGGAGAT
* * * * **
1455445 AA-AACTTG--TTGC---GATCTACTATA
192 AAGATCTGGAATT-CTTAGGTCTATTCCA
* * *** * * *
1455468 CTGTAA-CTTC-AGAGTGATAAGATCCTTTATTTTAATCT-CTTCCACTGTAA-TCTCAGGGAAA
1 CTGTAATC-TCAAG-GAGATAAGA-CC-TGA-TGCGATCTAC-TCTACTGTAACT-TCAGAGAGA
* * * * * * * * ** *
1455529 TAGGAT--TACTAGCTTCAA-TC-TTCTCTGCTGTAATCTCAGGGAGATAAGATTCACCATTTTT
59 TAAGATCCT-TTA-TTTTAATTCGTTC-C-ACTGTAATCTCAGGGAAATAGGATT-ACTAGCTTC
* * * *** *
1455590 GAT-TAGCTC--CAC-TATTGCTTAGGGAGATAAGA-TCTGGATTTCTTC-AGTCTA-TTCCACT
119 AATCT-GCTCTGC-CGTAAT-CTCAGGGAGATAAGATTCACCA-TT-TTCGA-T-TAGCTCCACT
* * * * * * * * *
1455648 GTAATCTCAGAGAGATAAGACCT-G-ATGC---GATCTACTCTA
177 AT-TTCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCA
* * *** * * * *
1455687 CTATAA-CTTC-AGAGAGATAAGATCCTTTATTTTAAT-TCATTCCACTGTAA-TCTCAGGGAAA
1 CTGTAATC-TCAAG-GAGATAAGA-CC-TGA-TGCGATCT-ACTCTACTGTAACT-TCAGAGAGA
* * * * ** * * * * **
1455748 TAGGAT--TGCTAGCTTCAA-TCTGCTT-CGTTCTAATCTCAGGGAGATAAGATTCACCATTTTC
59 TAAGATCCT-TTA-TTTTAATTC-G-TTCCACTGTAATCTCAGGGAAATAGGATT-ACTAGCTTC
* *** *
1455809 GATTAGCCTGCTCTGTTATAATCTCAGGGAGAGAAGATTCACCATTTTCGATTAGCTCCACTATT
119 -A--A-TCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATT
* *
1455874 GCTTAGGGAGATAAGATCTGGAATTCCTAGGTCTATTCCA
180 TCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCA
* *
1455914 CTGCAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
* *
1455979 CTTTATTTTAATTCATTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCTGC
66 CTTTATTTTAATTCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGC
*
1456044 CGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGAGAGATAAGA
131 CGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGA
*
1456109 TCTGGAATTCCTAGGTCTATTCCA
196 TCTGGAATTCTTAGGTCTATTCCA
*
1456133 CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATC
1 CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
1456198 CTTTATTTTAATT
66 CTTTATTTTAATT
1456211 ACTCTACTGT
Statistics
Matches: 1772, Mismatches: 218, Indels: 128
0.84 0.10 0.06
Matches are distributed among these distances:
215 3 0.00
216 23 0.01
217 6 0.00
218 26 0.01
219 1507 0.85
220 39 0.02
221 12 0.01
222 21 0.01
223 23 0.01
224 69 0.04
225 14 0.01
226 3 0.00
227 23 0.01
228 3 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (219 bp):
CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
CTTTATTTTAATTCGTTCCACTGTAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCTGC
CGTAATCTCAGGGAGATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGGGAGATAAGA
TCTGGAATTCTTAGGTCTATTCCA
Found at i:1456218 original size:43 final size:43
Alignment explanation
Indices: 1456167--1456252 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
1456157 TGATGCGATC
1456167 TACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAAT
1 TACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAAT
* *
1456210 TACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAAT
1 TACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAAT
1456253 CCGTTCTACT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (43 bp):
TACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAAT
Found at i:1456290 original size:262 final size:262
Alignment explanation
Indices: 1455948--1456471 Score: 872
Period size: 262 Copynumber: 2.0 Consensus size: 262
1455938 TGATGCGATC
*
1455948 TACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATTCATTCCACTGTAATCTCAGGG
1 TACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTGTAATCTCAGGG
1456013 AAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCG
66 AAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCG
* *
1456078 ATTAGCTCCACTATTTCTTAGAGAGATAAGATCTGGAATTCCT-AGGTCTATTCCACTGTAAT-C
131 ATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCCTCA-GTCAATTCCACTGTAATCC
* *
1456141 TCAAGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTT
195 T-AAGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCATTTACTT
1456206 TAAT
259 TAAT
* * * *
1456210 TACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCTACTGTAATCTCAGGG
1 TACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTGTAATCTCAGGG
*
1456275 AAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTTG
66 AAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCG
* * *
1456340 ATTAGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCAGTCAATTCCACTGTAATCCT
131 ATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCCTCAGTCAATTCCACTGTAATCCT
* * *
1456405 AGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCATTTACTTTA
196 AAGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCATTTACTTTA
1456470 AT
261 AT
1456472 CCGTTCCACT
Statistics
Matches: 244, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
262 241 0.99
263 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34
Consensus pattern (262 bp):
TACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAATCCATTCCACTGTAATCTCAGGG
AAATAGGATTACTGGCTTCAATCTGCTCTGCCGTAATCTCAGGGAGATAAGATTCACCATTTTCG
ATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCCTCAGTCAATTCCACTGTAATCCT
AAGGAGATAAGACCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCATTTACTTTA
AT
Found at i:1456824 original size:58 final size:58
Alignment explanation
Indices: 1456594--1456803 Score: 393
Period size: 58 Copynumber: 3.6 Consensus size: 58
1456584 AGGTAAAACT
* * *
1456594 TGATGTGATCTACTCTACTGTAACTTCAGAGAGATATCTTTCGCGCAGACTATCTCTC
1 TGATGCGATCTCCTCTACAGTAACTTCAGAGAGATATCTTTCGCGCAGACTATCTCTC
1456652 TGATGCGATCTCCTCTACAGTAACTTCAGAGAGATATCTTTCGCGCAGACTATCTCTC
1 TGATGCGATCTCCTCTACAGTAACTTCAGAGAGATATCTTTCGCGCAGACTATCTCTC
1456710 TGATGCGATCTCCTCTACAGTAACTTCAGAGAGATATCTTTCGCGCAGACTATCTCTC
1 TGATGCGATCTCCTCTACAGTAACTTCAGAGAGATATCTTTCGCGCAGACTATCTCTC
1456768 TGATGCGATCTCCTCTACAGTAACTTCAGAGAGATA
1 TGATGCGATCTCCTCTACAGTAACTTCAGAGAGATA
1456804 AGATCCTTTA
Statistics
Matches: 149, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 149 1.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (58 bp):
TGATGCGATCTCCTCTACAGTAACTTCAGAGAGATATCTTTCGCGCAGACTATCTCTC
Found at i:1457113 original size:92 final size:92
Alignment explanation
Indices: 1457000--1457184 Score: 307
Period size: 92 Copynumber: 2.0 Consensus size: 92
1456990 ATAAGACCTG
* * * *
1457000 ATGCGATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCTACTGTAA
1 ATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATCCGTTCCACTGTAA
*
1457065 TCTCAGGGAAATAGGATTACTAGCTTC
66 TCTAAGGGAAATAGGATTACTAGCTTC
*
1457092 ATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATCTGTTCCACTGTAA
1 ATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATCCGTTCCACTGTAA
*
1457157 TCTAAGGGAAATAGGATTACTGGCTTC
66 TCTAAGGGAAATAGGATTACTAGCTTC
1457184 A
1 A
1457185 ATTTGCTCCG
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 86 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (92 bp):
ATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATCCGTTCCACTGTAA
TCTAAGGGAAATAGGATTACTAGCTTC
Found at i:1457347 original size:311 final size:313
Alignment explanation
Indices: 1456770--1457403 Score: 927
Period size: 311 Copynumber: 2.0 Consensus size: 313
1456760 TATCTCTCTG
* *
1456770 ATGCGATCTCCTCTACAGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTCTTCCACTGTAA
1 ATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATCTCTTCCACTGTAA
* *
1456835 TCTCAGGGAAATAGGATTACTAGCTTCTTACTAGCTTCAATCTTCTCTGCTGTAATCTCAGGGAG
66 TCTAAGGGAAATAGGATTACTAG--------T-GCTTCAATCTTCTCCGCTGTAATCTCAGGGAG
* * *
1456900 ATAAGATTCACCATTTTCGATTAGCTCCACTATTTCTTAGAGAGATAAGATCTGGAATTCCTAGG
122 AGAAGATTCACAATTTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCCTAGG
* *
1456965 TCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGC
187 TCAATTCCACTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGA
* * *
1457030 GATAAGATCCTTTATTTTAATCCGTTCTACTGTAATCTCAGGGAAATAGGATTACTAGCTTC
252 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTAGCTTC
*
1457092 ATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATCTGTTCCACTGTAA
1 ATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATCTCTTCCACTGTAA
1457157 TCTAAGGGAAATAGGATTACT-G-GCTTCAAT-TTGCTCCGCTGTAATCTCAGGGAGAGAAGATT
66 TCTAAGGGAAATAGGATTACTAGTGCTTCAATCTT-CTCCGCTGTAATCTCAGGGAGAGAAGATT
* * * * *
1457219 CACAATTTTTGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTTCTTCA-GTCAATTC
130 CACAATTTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCCT-AGGTCAATTC
* *
1457283 CACTGTAATC-CTAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAG
194 CACTGTAATCTC-AAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAG
* *
1457347 ATCCTTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTC
258 ATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTAGCTTC
1457403 A
1 A
1457404 ATTTGCTCTG
Statistics
Matches: 287, Mismatches: 22, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
310 3 0.01
311 200 0.70
312 1 0.00
321 1 0.00
322 82 0.29
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (313 bp):
ATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATCTCTTCCACTGTAA
TCTAAGGGAAATAGGATTACTAGTGCTTCAATCTTCTCCGCTGTAATCTCAGGGAGAGAAGATTC
ACAATTTTCGATTAGCTCCACTATTGCTTAGAGAGATAAGATCTGGAATTCCTAGGTCAATTCCA
CTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
CTTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTAGCTTC
Found at i:1457476 original size:44 final size:44
Alignment explanation
Indices: 1457364--1457466 Score: 161
Period size: 44 Copynumber: 2.3 Consensus size: 44
1457354 ATTTTCATCC
* * *
1457364 GCTCCACTGTAATCTCAGGCAAATAGGATTACTGGCTTCAATTT
1 GCTCCGCTGTAATCTCAGGCAGATAGGATTACTGGCTTCAATCT
* *
1457408 GCTCTGCTGTAATCTCAGGCAGATAGGATTACTGGCTTGAATCT
1 GCTCCGCTGTAATCTCAGGCAGATAGGATTACTGGCTTCAATCT
1457452 GCTCCGCTGTAATCT
1 GCTCCGCTGTAATCT
1457467 TATGGAGATA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 53 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.32
Consensus pattern (44 bp):
GCTCCGCTGTAATCTCAGGCAGATAGGATTACTGGCTTCAATCT
Found at i:1457571 original size:311 final size:307
Alignment explanation
Indices: 1456886--1457524 Score: 727
Period size: 311 Copynumber: 2.1 Consensus size: 307
1456876 CTTCTCTGCT
* * * * *
1456886 GTAATCTCAGGGAGATAAGATTCACCATTTTCGAT-TAGCTCCACTATTTCTTAGAGAGATAAGA
1 GTAATCTCAGGGAGACAAGATTCACAATCTTCGATCT-GCTCCACTATTGCTTAGGGAGATAAGA
*
1456950 TCTGGAATTCCTAGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTA
65 TCTGGAATTCCTAGGTCAATTCCACTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTA
* * * *
1457015 CTGTAACTTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCTACTGTAATCTCAGGGAAATAGG
130 CTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGG
* * * *
1457080 ATTACTAGCTTCATGCGATCTACTCTACAGTAACTTCAGAGAGATAAAATCCTTTATTTTAATCT
195 ATTACTAGCTTCA---GATCTACTCTACAGTAACTTCAGAGAGATAAAATACTTGACTTGAATCT
* * * *
1457145 GTTCCACTGTAATCTAAGGGAAATAGGATTACTGGCTTCAATTTGCTCCGC
257 GCTCCACTGTAATCTAAGGGAAATAAGATTACCGGCTTCAATTTGCTCCAC
* * * *
1457196 TGTAATCTCAGGGAGAGAAGATTCACAATTTTTGATTTGCTCCACTATTGCTTAGGGAGATAAGA
1 -GTAATCTCAGGGAGACAAGATTCACAATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGA
* * *
1457261 TCTGGATTTCTTCA-GTCAATTCCACTGTAATC-CTAGGGAGATAAGACCTGATGCGATCTACTC
65 TCTGGAATTCCT-AGGTCAATTCCACTGTAATCTC-AAGGAGATAAGACCTGATGCGATCTACTC
* *
1457324 TACTGTAACTTTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATA
128 TACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATA
* * * * * * * *
1457389 GGATTACTGGCTTCA-ATTTGCTCTGCTGTAA-TCTCAG-GCAGATAGGATTAC-TGGCTTGAAT
193 GGATTACTAGCTTCAGATCTACTCTACAGTAACT-TCAGAG-AGATA-AAATACTTGACTTGAAT
* * * * * *
1457450 CTGCTCCGCTGTAATCTTATGGAGATAAGATTCACCGTCTTCGATTTGCTCCAC
255 CTGCTCCACTGTAATCTAAGGGAAATAAGATT-ACCGGCTTCAATTTGCTCCAC
* *
1457504 -TATTGCTGAGGGAGACAAGAT
1 GTAAT-CTCAGGGAGACAAGAT
1457525 CTGGAACTCT
Statistics
Matches: 280, Mismatches: 40, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
306 5 0.02
307 67 0.24
308 20 0.07
310 1 0.00
311 185 0.66
312 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (307 bp):
GTAATCTCAGGGAGACAAGATTCACAATCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGAT
CTGGAATTCCTAGGTCAATTCCACTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCTAC
TGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGCAAATAGGA
TTACTAGCTTCAGATCTACTCTACAGTAACTTCAGAGAGATAAAATACTTGACTTGAATCTGCTC
CACTGTAATCTAAGGGAAATAAGATTACCGGCTTCAATTTGCTCCAC
Found at i:1457663 original size:265 final size:264
Alignment explanation
Indices: 1457140--1457959 Score: 1142
Period size: 263 Copynumber: 3.1 Consensus size: 264
1457130 CCTTTATTTT
* * * *
1457140 AATCTGTTCCACTGTAATCTAAGGGAAATAGGATTACTGGCTTCAATTTGCTCCGCTGTAATCTC
1 AATCTGCTCCACTGTAATCTAAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTT
* ** * * * * **
1457205 AGGGAGAGAAGATTCACAATTTTTGATTTGCTCCACTATTGCTTAGGGAGATAAGATCTGGATTT
66 AGGGAGATAAGATTCACCGTCTTCGATTTGCTCCACTATTGCTCAGGGAGACAAGATCTGGAACT
* * *
1457270 CTTCAGTCAATTCCACTGTAATCCTA-GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACT
131 CTTCGGTCTATTCCACTGTAATCTTAGGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACT
* * * *
1457334 TTAGAGAGATAAGATCCTTTATTTTCATCCGCTCCACTGTAATCTCAGGCAAATAGGATTACTGG
196 TCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGG
1457399 CTTC
261 CTTC
* ** * * *
1457403 AATTTGCTCTGCTGTAATCTCAGGCAGATAGGATTACTGGCTTGAATCTGCTCCGCTGTAATCTT
1 AATCTGCTCCACTGTAATCTAAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTT
* *
1457468 ATGGAGATAAGATTCACCGTCTTCGATTTGCTCCACTATTGCTGAGGGAGACAAGATCTGGAACT
66 AGGGAGATAAGATTCACCGTCTTCGATTTGCTCCACTATTGCTCAGGGAGACAAGATCTGGAACT
* * *
1457533 CTTCGGTCTGTTCCACAGTTATCTTAGGGGGAGATAAGACCTGATGCGATCTACTCTACTGTAAC
131 CTTCGGTCTATTCCACTGTAATCTTA-GGGGAGATAAGACCTGATGCGATCTACTCTACTGTAAC
* *
1457598 TTCAGAGCGATAAGATCCTTTATTTTAATCCGTTCTACTGTAATCTCAGGGAAATAGGATTACTG
195 TTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTG
1457663 GCTTC
260 GCTTC
* *
1457668 AGTCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTT
1 AATCTGCTCCACTGTAATCTAAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTT
* * * *
1457733 AGGGAGATAAGATTCACCGTCTTCGATCTGCTCCGCTATTGCTCAAGGAGACAAGATCTAGAACT
66 AGGGAGATAAGATTCACCGTCTTCGATTTGCTCCACTATTGCTCAGGGAGACAAGATCTGGAACT
* * *
1457798 CTTCGGTCTATTCCACTGTAAGCTCAGGGG-GATAAGACCTTATGCGATCTACTCTACTGTAACT
131 CTTCGGTCTATTCCACTGTAATCTTAGGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACT
* * * * *
1457862 TCAGAGAGATAATATCCTTTATTTTAATCCGTTCCACTATAATCTCAGGGTAATAGGATTAGTAG
196 TCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGG
1457927 CATT-
261 C-TTC
* * * *
1457931 AATCTGCGCCGCTATAATCTCAGGGAGAT
1 AATCTGCTCCACTGTAATCTAAGGGAGAT
1457960 CAGATTCACC
Statistics
Matches: 491, Mismatches: 63, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
263 246 0.50
264 6 0.01
265 239 0.49
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (264 bp):
AATCTGCTCCACTGTAATCTAAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTT
AGGGAGATAAGATTCACCGTCTTCGATTTGCTCCACTATTGCTCAGGGAGACAAGATCTGGAACT
CTTCGGTCTATTCCACTGTAATCTTAGGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACT
TCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTGTAATCTCAGGGAAATAGGATTACTGG
CTTC
Found at i:1457682 original size:44 final size:44
Alignment explanation
Indices: 1457634--1457766 Score: 185
Period size: 44 Copynumber: 3.0 Consensus size: 44
1457624 AATCCGTTCT
* * *
1457634 ACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAGTCTGCTCC
1 ACTGTAATCTTAGGGAGATAGGATTACTGGCTTCAATCTGCTCC
1457678 ACTGTAATCTTAGGGAGATAGGATTACTGGCTTCAATCTGCTCC
1 ACTGTAATCTTAGGGAGATAGGATTACTGGCTTCAATCTGCTCC
* * * * *
1457722 GCTGTAATCTTAGGGAGATAAGATTCACCGTCTTCGATCTGCTCC
1 ACTGTAATCTTAGGGAGATAGGATT-ACTGGCTTCAATCTGCTCC
1457767 GCTATTGCTC
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
44 64 0.80
45 16 0.20
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (44 bp):
ACTGTAATCTTAGGGAGATAGGATTACTGGCTTCAATCTGCTCC
Found at i:1458375 original size:44 final size:44
Alignment explanation
Indices: 1458325--1458467 Score: 187
Period size: 44 Copynumber: 3.2 Consensus size: 44
1458315 CCTTTATTTT
* * * *
1458325 AATCTGCTCTACTGTAATCTCAGGGAAATAGGATTATTGGCTTC
1 AATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTC
*
1458369 AGTCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTC
1 AATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTC
* * * *
1458413 AATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCGTCTTC
1 AATCTGCTCCACTGTAATCTTAGGGAGATAGGATT-ACTGGCTTC
*
1458458 GATCTGCTCC
1 AATCTGCTCC
1458468 GCTATTGCTC
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
44 71 0.82
45 16 0.18
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTC
Found at i:1458413 original size:263 final size:262
Alignment explanation
Indices: 1458104--1458709 Score: 790
Period size: 263 Copynumber: 2.3 Consensus size: 262
1458094 ATCCTTTATT
* ** * * *
1458104 TTCATCTGCTCCACTGTAATATAAGAAAAATAGGATTGCTGGCTTCAATCTGCTCCGTTATAATC
1 TTCATCTGCTCCACTGTAATCTAAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTATAATC
* * * * *
1458169 TCAGGGAGATAAGATTCACCATTTTCGAT-TAGCTCCAG-TATTGCTTAGGGAGATAAGATCTGG
66 TCAGGGAGATAAGATTCACCATCTTCGATCT-GCTCC-GCTATTGCTCAAGGAGACAAGATCTAG
*
1458232 AATTCTTAGGTCTATTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTATA
129 AACTCTTAGGTCTATTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTATA
* * ** * *
1458297 ACTTCATAGAGATAAGATCCTTTATTTTAATCTGCTCTACTGTAATCTCAGGGAAATAGGATTAT
194 ACTTCAGAGAGATAAAATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAAATAGGATTAC
1458362 TGGC
259 TGGC
* *
1458366 TTCAGTCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAAT
1 TTCA-TCTGCTCCACTGTAATCTAAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTATAAT
* *
1458431 CTTAGGGAGATAAGATTCACCGTCTTCGATCTGCTCCGCTATTGCTCAAGGAGACAAGATCTAGA
65 CTCAGGGAGATAAGATTCACCATCTTCGATCTGCTCCGCTATTGCTCAAGGAGACAAGATCTAGA
* * * * *
1458496 ACTCTTCGGTCTATTCCACTGTAAGCTCAGGGGGATAAGACCTTATGCGATCTACTCTACTGTAA
130 ACTCTTAGGTCTATTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTATAA
*
1458561 CTTCAGAGAGATAAAATCTTTTATTTTAATCCACTCCACTGTAATCTCAGGGAAATAGGATTACT
195 CTTCAGAGAGATAAAATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAAATAGGATTACT
1458626 GGC
260 GGC
* * * *** *
1458629 TTCAATCTCCTCTACTGTAATCTGAA-GGAGATAAGATTCACCATCTTCGATCTGCTCCGCTAT-
1 TTC-ATCTGCTCCACTGTAATCT-AAGGGAGATAGGATT-ACTGGCTTCAATCTGCTCCGCTATA
*
1458692 -TGCTCAGGGAGACAAGAT
63 AT-CTCAGGGAGATAAGAT
1458710 CTGTTATATT
Statistics
Matches: 298, Mismatches: 39, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
262 6 0.02
263 270 0.91
264 22 0.07
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (262 bp):
TTCATCTGCTCCACTGTAATCTAAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTATAATC
TCAGGGAGATAAGATTCACCATCTTCGATCTGCTCCGCTATTGCTCAAGGAGACAAGATCTAGAA
CTCTTAGGTCTATTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTATAAC
TTCAGAGAGATAAAATCCTTTATTTTAATCCACTCCACTGTAATCTCAGGGAAATAGGATTACTG
GC
Found at i:1458446 original size:219 final size:218
Alignment explanation
Indices: 1457670--1458403 Score: 907
Period size: 219 Copynumber: 3.4 Consensus size: 218
1457660 CTGGCTTCAG
* * * *
1457670 TCTGCTCCACTGTAATCTTAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAG
1 TCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTATAATCTCAG
* * * * * *
1457735 GGAGATAAGATTCACCGTCTTCGATCT-GCTCCGCTATTGCTCAAGGAGACAAGATCTAGAACTC
66 GGAGATAAGATTCACCATCTTCGAT-TAGCTCCGCTATTGCTTAGGGAGATAAGATCTGGAATTC
* * *
1457799 TTCGGTCTATTCCACTGTAAGCTCAGGGGGATAAGACCTTATGCGATCTACTCTACTGTAACTTC
130 TT-GGTCTATTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTC
*
1457864 AGAGAGATAATATCCTTTATTTTAA
194 AGAGAGATAAGATCCTTTATTTTAA
* * * * * * *
1457889 TCCGTTCCACTATAATCTCAGGGTAATAGGATTAGTAGCATT-AATCTGCGCCGCTATAATCTCA
1 TCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAATCTGCTCCGCTATAATCTCA
* * ** * * * * *
1457953 GGGAGATCAGATTCACCATTTTTTATTAGCTCCACTATTGCTTAGGGAGATAATATTTGGATTTA
65 GGGAGATAAGATTCACCATCTTCGATTAGCTCCGCTATTGCTTAGGGAGATAAGATCTGGAATTC
* * * * * *
1458018 TTGAGTCTATTCCACTGTAATCTCAAGGAGATAAAACCTGATGTGATCTACTCTACTGTAACTTT
130 TTG-GTCTATTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTC
* *
1458083 AGGGAGATAAGATCCTTTATTTTCA
194 AGAGAGATAAGATCCTTTATTTTAA
* * ** * *
1458108 TCTGCTCCACTGTAATATAAGAAAAATAGGATTGCTGGCTTCAATCTGCTCCGTTATAATCTCAG
1 TCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTATAATCTCAG
*
1458173 GGAGATAAGATTCACCATTTTCGATTAGCTCCAG-TATTGCTTAGGGAGATAAGATCTGGAATTC
66 GGAGATAAGATTCACCATCTTCGATTAGCTCC-GCTATTGCTTAGGGAGATAAGATCTGGAATTC
*
1458237 TTAGGTCTATTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTATAACTTC
130 TT-GGTCTATTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTC
*
1458302 ATAGAGATAAGATCCTTTATTTTAA
194 AGAGAGATAAGATCCTTTATTTTAA
* * * * * *
1458327 TCTGCTCTACTGTAATCTCAGGGAAATAGGATTATTGGCTTCAGTCTGCTCCACTGTAATCTTAG
1 TCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTATAATCTCAG
*
1458392 GGAGATAGGATT
66 GGAGATAAGATT
1458404 ACTGGCTTCA
Statistics
Matches: 429, Mismatches: 80, Indels: 12
0.82 0.15 0.02
Matches are distributed among these distances:
218 4 0.01
219 422 0.98
220 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (218 bp):
TCTGCTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCGCTATAATCTCAG
GGAGATAAGATTCACCATCTTCGATTAGCTCCGCTATTGCTTAGGGAGATAAGATCTGGAATTCT
TGGTCTATTCCACTGTAACCTCAGGGAGATAAGACCTAATGCGATCTACTCTACTGTAACTTCAG
AGAGATAAGATCCTTTATTTTAA
Found at i:1458668 original size:701 final size:702
Alignment explanation
Indices: 1457430--1458703 Score: 2077
Period size: 701 Copynumber: 1.8 Consensus size: 702
1457420 TCTCAGGCAG
* * * * *
1457430 ATAGGATTACTGGCTTGAATCTGCTCCGCTGTAATCTTATGGAGATAAGATTCACCGTCTTCGAT
1 ATAGGATTACTGGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCATCTTCGAT
* * * * * *
1457495 TTGCTCCACTATTGCTGAGGGAGACAAGATCTGGAACTCTTCGGTCTGTTCCACAGTTATCTTAG
66 TAGCTCCACTATTGCTGAGGGAGACAAGATCTGGAACTCTTAGGTCTATTCCACAGTAACCTCA-
* * *
1457560 GGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGCGATAAGATCCTTTATTTTA
130 GGGGAGATAAGACCTAATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTA
*
1457625 ATCCGTTCTACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAGTCTGCTCCACTGTAATCTTA
195 ATCCGCTCTACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAGTCTGCTCCACTGTAATCTTA
1457690 GGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCGTCT
260 GGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCGTCT
1457755 TCGATCTGCTCCGCTATTGCTCAAGGAGACAAGATCTAGAACTCTTCGGTCTATTCCACTGTAAG
325 TCGATCTGCTCCGCTATTGCTCAAGGAGACAAGATCTAGAACTCTTCGGTCTATTCCACTGTAAG
*
1457820 CTCAGGGGGATAAGACCTTATGCGATCTACTCTACTGTAACTTCAGAGAGATAATATCCTTTATT
390 CTCAGGGGGATAAGACCTTATGCGATCTACTCTACTGTAACTTCAGAGAGATAAAATCCTTTATT
** * * * *
1457885 TTAATCCGTTCCACTATAATCTCAGGGTAATAGGATTAGTAGCATTAATCTGCGCCGCTATAATC
455 TTAATCCACTCCACTATAATCTCAGGGAAATAGGATTACTAGCATTAATCTCCGCCACTATAATC
* * * ** *
1457950 TCAGGGAGATCAGATTCACCATTTTTTAT-TAGCTCCACTATTGCTTAGGGAGATAATATTTGGA
520 TCAAGGAGATAAGATTCACCATCTTCGATCT-GCTCCACTATTGCTCAGGGAGATAATATTTGGA
1458014 TTTATTGAGTCTATTCCACTGTAATCTCAAGGAGATAAAACCTGATGTGATCTACTCTACTGTAA
584 TTTATTGAGTCTATTCCACTGTAATCTCAAGGAGATAAAACCTGATGTGATCTACTCTACTGTAA
1458079 CTTTAGGGAGATAAGATCCTTTATTTTCATCTGCTCCACTGTAATATAAGAAAA
649 CTTTAGGGAGATAAGATCCTTTATTTTCATCTGCTCCACTGTAATATAAGAAAA
* * *
1458133 ATAGGATTGCTGGCTTCAATCTGCTCCGTTATAATCTCAGGGAGATAAGATTCACCATTTTCGAT
1 ATAGGATTACTGGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCATCTTCGAT
* * * * *
1458198 TAGCTCCAGTATTGCTTAGGGAGATAAGATCTGGAATTCTTAGGTCTATTCCACTGTAACCTCA-
66 TAGCTCCACTATTGCTGAGGGAGACAAGATCTGGAACTCTTAGGTCTATTCCACAGTAACCTCAG
*
1458262 GGGAGATAAGACCTAATGCGATCTACTCTACTATAACTTCATAGAGATAAGATCCTTTATTTTAA
131 GGGAGATAAGACCTAATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAA
* *
1458327 TCTGCTCTACTGTAATCTCAGGGAAATAGGATTATTGGCTTCAGTCTGCTCCACTGTAATCTTAG
196 TCCGCTCTACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAGTCTGCTCCACTGTAATCTTAG
1458392 GGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCGTCTT
261 GGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCGTCTT
1458457 CGATCTGCTCCGCTATTGCTCAAGGAGACAAGATCTAGAACTCTTCGGTCTATTCCACTGTAAGC
326 CGATCTGCTCCGCTATTGCTCAAGGAGACAAGATCTAGAACTCTTCGGTCTATTCCACTGTAAGC
*
1458522 TCAGGGGGATAAGACCTTATGCGATCTACTCTACTGTAACTTCAGAGAGATAAAATCTTTTATTT
391 TCAGGGGGATAAGACCTTATGCGATCTACTCTACTGTAACTTCAGAGAGATAAAATCCTTTATTT
* * * * *
1458587 TAATCCACTCCACTGTAATCTCAGGGAAATAGGATTACTGGC-TTCAATCTCCTCTACTGTAATC
456 TAATCCACTCCACTATAATCTCAGGGAAATAGGATTACTAGCATT-AATCTCCGCCACTATAATC
* *
1458651 TGAAGGAGATAAGATTCACCATCTTCGATCTGCTCCGCTATTGCTCAGGGAGA
520 TCAAGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGGAGA
1458704 CAAGATCTGT
Statistics
Matches: 522, Mismatches: 47, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
700 2 0.00
701 409 0.78
702 1 0.00
703 110 0.21
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (702 bp):
ATAGGATTACTGGCTTCAATCTGCTCCGCTATAATCTCAGGGAGATAAGATTCACCATCTTCGAT
TAGCTCCACTATTGCTGAGGGAGACAAGATCTGGAACTCTTAGGTCTATTCCACAGTAACCTCAG
GGGAGATAAGACCTAATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTTATTTTAA
TCCGCTCTACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAGTCTGCTCCACTGTAATCTTAG
GGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTTAGGGAGATAAGATTCACCGTCTT
CGATCTGCTCCGCTATTGCTCAAGGAGACAAGATCTAGAACTCTTCGGTCTATTCCACTGTAAGC
TCAGGGGGATAAGACCTTATGCGATCTACTCTACTGTAACTTCAGAGAGATAAAATCCTTTATTT
TAATCCACTCCACTATAATCTCAGGGAAATAGGATTACTAGCATTAATCTCCGCCACTATAATCT
CAAGGAGATAAGATTCACCATCTTCGATCTGCTCCACTATTGCTCAGGGAGATAATATTTGGATT
TATTGAGTCTATTCCACTGTAATCTCAAGGAGATAAAACCTGATGTGATCTACTCTACTGTAACT
TTAGGGAGATAAGATCCTTTATTTTCATCTGCTCCACTGTAATATAAGAAAA
Found at i:1492465 original size:25 final size:26
Alignment explanation
Indices: 1492414--1492475 Score: 99
Period size: 25 Copynumber: 2.4 Consensus size: 26
1492404 TAAAAAAATA
1492414 ACCAAAATATTATAACTTTTTTTATTT
1 ACCAAAATATTATAAC-TTTTTTATTT
*
1492441 ATCAAAATATTATAA-TTTTTTATTT
1 ACCAAAATATTATAACTTTTTTATTT
1492466 ACCAAAATAT
1 ACCAAAATAT
1492476 AACAAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 19 0.58
27 14 0.42
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (26 bp):
ACCAAAATATTATAACTTTTTTATTT
Found at i:1492568 original size:27 final size:27
Alignment explanation
Indices: 1492529--1492587 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
1492519 GCTTGGTCAG
1492529 GCCAATCACATTGGAGGCACCAAAGGT
1 GCCAATCACATTGGAGGCACCAAAGGT
* * * *
1492556 GCCAATGAGATTGGCGGCACCAATGGT
1 GCCAATCACATTGGAGGCACCAAAGGT
1492583 GCCAA
1 GCCAA
1492588 AAGACTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.29, T:0.15
Consensus pattern (27 bp):
GCCAATCACATTGGAGGCACCAAAGGT
Found at i:1493148 original size:18 final size:18
Alignment explanation
Indices: 1493127--1493235 Score: 103
Period size: 18 Copynumber: 5.9 Consensus size: 18
1493117 AGTGATAACT
*
1493127 CTATTTTAATTTAATAAA
1 CTATTCTAATTTAATAAA
*
1493145 CTATTCTCATTTAAT-AA
1 CTATTCTAATTTAATAAA
*
1493162 CTCCATTTTAATTTAATAAA
1 CT--ATTCTAATTTAATAAA
* * *
1493182 GTATTCTCATTTAATAACT
1 CTATTCTAATTTAATAA-A
*
1493201 CTATTTTAATTTAATAAA
1 CTATTCTAATTTAATAAA
* *
1493219 ATATTCTCATTTAATAA
1 CTATTCTAATTTAATAA
1493236 CTCTATCTTA
Statistics
Matches: 72, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
17 4 0.06
18 40 0.56
19 25 0.35
20 3 0.04
ACGTcount: A:0.39, C:0.12, G:0.01, T:0.48
Consensus pattern (18 bp):
CTATTCTAATTTAATAAA
Found at i:1493170 original size:37 final size:37
Alignment explanation
Indices: 1493121--1493248 Score: 220
Period size: 37 Copynumber: 3.5 Consensus size: 37
1493111 TAGTTAAGTG
*
1493121 ATAACTCTATTTTAATTTAATAAACTATTCTCATTTA
1 ATAACTCTATTTTAATTTAATAAAATATTCTCATTTA
* *
1493158 ATAACTCCATTTTAATTTAATAAAGTATTCTCATTTA
1 ATAACTCTATTTTAATTTAATAAAATATTCTCATTTA
1493195 ATAACTCTATTTTAATTTAATAAAATATTCTCATTTA
1 ATAACTCTATTTTAATTTAATAAAATATTCTCATTTA
*
1493232 ATAACTCTATCTTAATT
1 ATAACTCTATTTTAATT
1493249 ATCACTTAAC
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 86 1.00
ACGTcount: A:0.38, C:0.13, G:0.01, T:0.48
Consensus pattern (37 bp):
ATAACTCTATTTTAATTTAATAAAATATTCTCATTTA
Found at i:1493177 original size:19 final size:18
Alignment explanation
Indices: 1493121--1493248 Score: 91
Period size: 18 Copynumber: 6.9 Consensus size: 18
1493111 TAGTTAAGTG
1493121 ATAACTCTATTTTAATTTA
1 ATAACTC-ATTTTAATTTA
* *
1493140 ATAAACT-ATTCTCATTTA
1 AT-AACTCATTTTAATTTA
1493158 ATAACTCCATTTTAATTTA
1 ATAACT-CATTTTAATTTA
* * *
1493177 ATAAAGT-ATTCTCATTTA
1 AT-AACTCATTTTAATTTA
1493195 ATAACTCTATTTTAATTTA
1 ATAACTC-ATTTTAATTTA
* * *
1493214 ATAAAAT-ATTCTCATTTA
1 AT-AACTCATTTTAATTTA
*
1493232 ATAACTCTATCTTAATT
1 ATAACTC-ATTTTAATT
1493249 ATCACTTAAC
Statistics
Matches: 83, Mismatches: 17, Indels: 18
0.70 0.14 0.15
Matches are distributed among these distances:
17 10 0.12
18 33 0.40
19 30 0.36
20 10 0.12
ACGTcount: A:0.38, C:0.13, G:0.01, T:0.48
Consensus pattern (18 bp):
ATAACTCATTTTAATTTA
Found at i:1495246 original size:45 final size:45
Alignment explanation
Indices: 1495182--1495271 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
1495172 GAAGTTCATG
1495182 ATGCAACCATTGTCAATAGACCAGTAAACATTACCAATAACTTCT
1 ATGCAACCATTGTCAATAGACCAGTAAACATTACCAATAACTTCT
1495227 ATGCAACCATTGTCAATAGACCAGTAAACATTACCAATAACTTCT
1 ATGCAACCATTGTCAATAGACCAGTAAACATTACCAATAACTTCT
1495272 GGCCAAACCC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.40, C:0.24, G:0.09, T:0.27
Consensus pattern (45 bp):
ATGCAACCATTGTCAATAGACCAGTAAACATTACCAATAACTTCT
Found at i:1495264 original size:21 final size:21
Alignment explanation
Indices: 1495195--1495265 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
1495185 CAACCATTGT
1495195 CAATAGACCAGTAAACATTAC
1 CAATAGACCAGTAAACATTAC
* * **
1495216 CAATA-ACTTCTATGCAACCATTGT
1 CAATAGAC--C-A-GTAAACATTAC
1495240 CAATAGACCAGTAAACATTAC
1 CAATAGACCAGTAAACATTAC
1495261 CAATA
1 CAATA
1495266 ACTTCTGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
20 2 0.05
21 17 0.46
22 2 0.05
23 2 0.05
24 12 0.32
25 2 0.05
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.24
Consensus pattern (21 bp):
CAATAGACCAGTAAACATTAC
Found at i:1500554 original size:24 final size:24
Alignment explanation
Indices: 1500508--1500561 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
1500498 TCTTTCTAAA
**
1500508 ATATTTAGTATTTATGAGTATAAT
1 ATATTTAGTATTTATGAACATAAT
*
1500532 ATATTTAGTATTTATTAACATAAT
1 ATATTTAGTATTTATGAACATAAT
*
1500556 ACATTT
1 ATATTT
1500562 GATTTTGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.39, C:0.04, G:0.07, T:0.50
Consensus pattern (24 bp):
ATATTTAGTATTTATGAACATAAT
Found at i:1505190 original size:21 final size:22
Alignment explanation
Indices: 1505151--1505195 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
1505141 AGTTTTTATT
1505151 AAAGAAATACCATAAATTCTAA
1 AAAGAAATACCATAAATTCTAA
1505173 AAAG-AAT-CCATAAAATTCTAA
1 AAAGAAATACCAT-AAATTCTAA
1505194 AA
1 AA
1505196 TTTATAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 4 0.18
21 14 0.64
22 4 0.18
ACGTcount: A:0.60, C:0.13, G:0.04, T:0.22
Consensus pattern (22 bp):
AAAGAAATACCATAAATTCTAA
Found at i:1506314 original size:43 final size:43
Alignment explanation
Indices: 1506224--1506325 Score: 116
Period size: 43 Copynumber: 2.4 Consensus size: 43
1506214 ATGGTGAGAC
* *
1506224 CCGATGGTGGCCGAGGCCTCCGCATGACCAAGGGCCAATTTTA
1 CCGATGGTGGCCGAGGCCTCCGCAGGACCAAGGGCCAAGTTTA
* * ** *
1506267 CCGATGGTGCCCGAGG-CTCCCGCGGGACCAAGGGCTTAGTTTG
1 CCGATGGTGGCCGAGGCCT-CCGCAGGACCAAGGGCCAAGTTTA
*
1506310 CCGATGGGGGCCGAGG
1 CCGATGGTGGCCGAGG
1506326 AACACGTAAG
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 2 0.04
43 47 0.96
ACGTcount: A:0.17, C:0.29, G:0.37, T:0.17
Consensus pattern (43 bp):
CCGATGGTGGCCGAGGCCTCCGCAGGACCAAGGGCCAAGTTTA
Found at i:1506903 original size:29 final size:31
Alignment explanation
Indices: 1506843--1506914 Score: 87
Period size: 29 Copynumber: 2.4 Consensus size: 31
1506833 GTGAAAAACT
1506843 CTTATTTGAGCACTTCTGCAAATGTTAGGCC
1 CTTATTTGAGCACTTCTGCAAATGTTAGGCC
* *
1506874 CTTATTTGATCA-TTTTG-AAATGTTTA-GCC
1 CTTATTTGAGCACTTCTGCAAATG-TTAGGCC
*
1506903 CTTATATGAGCA
1 CTTATTTGAGCA
1506915 ACCTCTAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 18 0.50
30 7 0.19
31 11 0.31
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40
Consensus pattern (31 bp):
CTTATTTGAGCACTTCTGCAAATGTTAGGCC
Found at i:1507262 original size:17 final size:19
Alignment explanation
Indices: 1507242--1507279 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
1507232 TATATTTTTA
1507242 AAAAATT-TAAAAAAAT-T
1 AAAAATTCTAAAAAAATCT
1507259 -AAAATTCTAAAAAAATCT
1 AAAAATTCTAAAAAAATCT
1507277 AAA
1 AAA
1507280 GAATATATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
16 6 0.33
17 9 0.50
18 1 0.06
19 2 0.11
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAAATTCTAAAAAAATCT
Found at i:1520024 original size:31 final size:31
Alignment explanation
Indices: 1519984--1520057 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
1519974 AAAGGTTACA
**
1519984 ATTTG-GTCACTAAACTATTCAAATGTTTTT
1 ATTTGAGTCACTAAACTATTCAAAAATTTTT
* *
1520014 ATTTGAGTCACTGAACTATTTAAAAATTTTT
1 ATTTGAGTCACTAAACTATTCAAAAATTTTT
* *
1520045 GTTTAAGTCACTA
1 ATTTGAGTCACTA
1520058 GGCAGTTATT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
30 5 0.14
31 31 0.86
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (31 bp):
ATTTGAGTCACTAAACTATTCAAAAATTTTT
Found at i:1521596 original size:22 final size:23
Alignment explanation
Indices: 1521562--1521605 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
1521552 TAATTTTAAA
*
1521562 TTTTCAATATTATTTAATCTTTTT
1 TTTTCAATATTATGTAAT-TTTTT
1521586 TTTTC-AT-TTATGTAATTTTT
1 TTTTCAATATTATGTAATTTTT
1521606 ATTAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 8 0.42
23 2 0.11
24 5 0.26
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.68
Consensus pattern (23 bp):
TTTTCAATATTATGTAATTTTTT
Found at i:1523178 original size:18 final size:18
Alignment explanation
Indices: 1523155--1523199 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
1523145 TGCCAGGTGC
1523155 GTATCCTAGCCCTTATAT
1 GTATCCTAGCCCTTATAT
*
1523173 GTATCCTAACCCTTATAT
1 GTATCCTAGCCCTTATAT
*
1523191 GTTTCCTAG
1 GTATCCTAG
1523200 ATGAACGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.22, C:0.27, G:0.11, T:0.40
Consensus pattern (18 bp):
GTATCCTAGCCCTTATAT
Found at i:1523600 original size:20 final size:21
Alignment explanation
Indices: 1523567--1523609 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
1523557 TTAATTTTAA
*
1523567 TTTTTCAATATTATTTAATCTT
1 TTTTTCAATATTATGTAAT-TT
1523589 TTTTTC-AT-TTATGTAATTT
1 TTTTTCAATATTATGTAATTT
1523608 TT
1 TT
1523610 ATTAATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 8 0.40
21 2 0.10
22 6 0.30
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTTCAATATTATGTAATTT
Found at i:1525216 original size:18 final size:18
Alignment explanation
Indices: 1525163--1525218 Score: 94
Period size: 18 Copynumber: 3.1 Consensus size: 18
1525153 CAGGTGCGTA
* *
1525163 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTT
1525181 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTT
1525199 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTT
1525217 TC
1 TC
1525219 TTTTCCCAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (18 bp):
TCCTAACCCTTATATGTT
Found at i:1529082 original size:125 final size:124
Alignment explanation
Indices: 1528705--1529102 Score: 517
Period size: 127 Copynumber: 3.2 Consensus size: 124
1528695 TAAGGCCAAA
* *
1528705 CAAGAACTATTGTAGAAAAAGTGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
1 CAAGAACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTG-CAGTGC
* * *
1528770 ATCCTGCTTGAAGCGTTTTTGATACTATTTTTTTAGAATCGTCTTCTCAAAATTATTTTTT
65 ATCCTGCTTGAAGCATTTTTTACACTA-TTTTTTAGAATCGTCTTCTCAAAATTATTTTTT
* * * * * *
1528831 CAAGAACTACTGTAAAAAAAACATCATCCACGTAGGAACTTTTTTCAGTAATTTTGCTAACAGTG
1 CAAGAACTACTGT-AGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCT-GCAGTG
*
1528896 CATCCTGCTTGAAGCATTTTTTACACTATTTGTTTAGAATCGTCTTCTCAAAATCATTTTTT
64 CATCCTGCTTGAAGCATTTTTTACACTATTT-TTTAGAATCGTCTTCTCAAAATTATTTTTT
* * *
1528958 CAGGAACTACTGTAGAAAAAGAGCGCCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGCAGTGCA
1 CAAGAACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGCAGTGCA
* * * * * * * *
1529023 TCCTGCTTGAAGCATTTTTTACATTATCCTTTCAAAACCGTATTCTTAAAATTACTTTTT
66 TCCTGCTTGAAGCATTTTTTACACTAT-TTTTTAGAATCGTCTTCTCAAAATTATTTTTT
* *
1529083 CAAAAACTACGGTAGAAAAA
1 CAAGAACTACTGTAGAAAAA
1529103 AACAAAAGTT
Statistics
Matches: 235, Mismatches: 33, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
125 73 0.31
126 53 0.23
127 109 0.46
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (124 bp):
CAAGAACTACTGTAGAAAAAGAGCGTCCACGTAGGAGCTTTTTTCAGTAATTTTGCTGCAGTGCA
TCCTGCTTGAAGCATTTTTTACACTATTTTTTAGAATCGTCTTCTCAAAATTATTTTTT
Found at i:1529247 original size:34 final size:33
Alignment explanation
Indices: 1529166--1529262 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 33
1529156 AAAAAAAACT
*
1529166 AAACCATAATTTAATTATTTTTTTTAAAATCCTA
1 AAACC-TAATTTAATTAATTTTTTTAAAATCCTA
* *
1529200 AACCCTAATTTAATTAATTTATTTAAAA-CCTTAA
1 AAACCTAATTTAATTAATTTTTTTAAAATCC-T-A
*
1529234 AAATCTAATTTAATTAATTTTTTTTAAAA
1 AAACCTAATTTAATTAA-TTTTTTTAAAA
1529263 AAAACCCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
32 2 0.04
33 22 0.41
34 20 0.37
35 10 0.19
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.46
Consensus pattern (33 bp):
AAACCTAATTTAATTAATTTTTTTAAAATCCTA
Found at i:1541138 original size:23 final size:23
Alignment explanation
Indices: 1541084--1541156 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
1541074 TTGGTGGGAG
* *
1541084 CATTTTAGCACTTCAATGCGATT
1 CATTTTAGCACTTCGATGCAATT
* *
1541107 CGTTCTAGCACTTCGATGCAATT
1 CATTTTAGCACTTCGATGCAATT
* * *
1541130 TATTTTAGCACTTAGGTGCAATT
1 CATTTTAGCACTTCGATGCAATT
1541153 CATT
1 CATT
1541157 CTGTAGAGTG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.40
Consensus pattern (23 bp):
CATTTTAGCACTTCGATGCAATT
Found at i:1542222 original size:46 final size:46
Alignment explanation
Indices: 1542040--1542224 Score: 237
Period size: 46 Copynumber: 4.0 Consensus size: 46
1542030 GCAATGCTAT
* * *
1542040 AACTCAGTATGGTTTTCTTCACTGAAATATCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACGTTCCAC
* * *
1542086 AACTCAGTATGACTTTTGTT-ACTGAAATACCATACCTACGTTTCAC
1 AACTCAGTATG-GTTTTCTTCACTGAAATACCATACCTACGTTCCAC
* * *
1542132 AACTCAGTATAGTTTTCTTCACTGAAACACCATACCTACGTTCCAT
1 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACGTTCCAC
* * * *
1542178 AACTCAGTATGGTTTTCTTTACTGAATTACCGTACCTACATTCCAC
1 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACGTTCCAC
1542224 A
1 A
1542225 CTTTGTCATG
Statistics
Matches: 120, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
45 6 0.05
46 108 0.90
47 6 0.05
ACGTcount: A:0.29, C:0.25, G:0.10, T:0.36
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACGTTCCAC
Found at i:1544912 original size:32 final size:32
Alignment explanation
Indices: 1544855--1544956 Score: 100
Period size: 32 Copynumber: 3.2 Consensus size: 32
1544845 GCTAGTATAA
* * * *
1544855 ATATAA-TGATAATTAGCCCCTTGTGGACGGG
1 ATATAATTGATGATTAGTCTCTTGTGGACGAG
*
1544886 ATATAATTGATGATT-GATCTCTTGTGGATGAG
1 ATATAATTGATGATTAG-TCTCTTGTGGACGAG
* * * *
1544918 ATATGATTGATGATTAGTCTTTTGTGGATGAT
1 ATATAATTGATGATTAGTCTCTTGTGGACGAG
1544950 ATATAAT
1 ATATAAT
1544957 GTTAAAAATC
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
31 7 0.12
32 51 0.86
33 1 0.02
ACGTcount: A:0.29, C:0.08, G:0.24, T:0.39
Consensus pattern (32 bp):
ATATAATTGATGATTAGTCTCTTGTGGACGAG
Found at i:1545273 original size:14 final size:15
Alignment explanation
Indices: 1545254--1545298 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
1545244 AATTAAGTAA
1545254 ATGTAATGTGATAAG
1 ATGTAATGTGATAAG
*
1545269 A-GTAAT-TAAGTAA-
1 ATGTAATGTGA-TAAG
1545282 ATGTAATGTGATAAG
1 ATGTAATGTGATAAG
1545297 AT
1 AT
1545299 ATGTTGAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 8
0.71 0.06 0.24
Matches are distributed among these distances:
13 3 0.12
14 16 0.67
15 5 0.21
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (15 bp):
ATGTAATGTGATAAG
Found at i:1545273 original size:28 final size:28
Alignment explanation
Indices: 1545241--1545297 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
1545231 AGCAAGGAAA
1545241 AGTAATTAAGTAAATGTAATGTGATAAG
1 AGTAATTAAGTAAATGTAATGTGATAAG
1545269 AGTAATTAAGTAAATGTAATGTGATAAG
1 AGTAATTAAGTAAATGTAATGTGATAAG
1545297 A
1 A
1545298 TATGTTGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (28 bp):
AGTAATTAAGTAAATGTAATGTGATAAG
Found at i:1545491 original size:15 final size:15
Alignment explanation
Indices: 1545471--1545502 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1545461 CATTTCACTA
*
1545471 TTATGTCTTTTTTAT
1 TTATGTCTTTTATAT
1545486 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
1545501 TT
1 TT
1545503 TACATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.72
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:1552716 original size:100 final size:100
Alignment explanation
Indices: 1552556--1552741 Score: 309
Period size: 100 Copynumber: 1.9 Consensus size: 100
1552546 GCTTGGCTAA
* * *
1552556 CTTACTAAGATTTATCAATACATTTTGGAAGTTTAATACTGCTCGTCACTGATGCTCAGTTATTA
1 CTTACTAAGATTTAGCAATACATTTTGGAACTTTAATACTGCTCGTCACTGATGCACAGTTATTA
*
1552621 CAGTTGAGCATGTATTAAGTGGCTTGGCTAACTTG
66 CAGTTGAGCATGTAATAAGTGGCTTGGCTAACTTG
* * *
1552656 CTTACTAGGATTTAGCAATACATTTTGGAACTTTAATACTGCTCGTCATTGATGCACAGTTGTTA
1 CTTACTAAGATTTAGCAATACATTTTGGAACTTTAATACTGCTCGTCACTGATGCACAGTTATTA
1552721 CAGTTGAGCATGTAATAAGTG
66 CAGTTGAGCATGTAATAAGTG
1552742 CTGGGTGATT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (100 bp):
CTTACTAAGATTTAGCAATACATTTTGGAACTTTAATACTGCTCGTCACTGATGCACAGTTATTA
CAGTTGAGCATGTAATAAGTGGCTTGGCTAACTTG
Found at i:1555634 original size:28 final size:29
Alignment explanation
Indices: 1555584--1555643 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
1555574 AATCTACAAT
* *
1555584 TTTATATATGAATTTTGATTTTG-TATAA
1 TTTATATATAAATTTTGAATTTGATATAA
*
1555612 TTTATATATAAAATTTT-AATTTGATCTAA
1 TTTATATAT-AAATTTTGAATTTGATATAA
1555641 TTT
1 TTT
1555644 TTGTAAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 14 0.52
29 13 0.48
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (29 bp):
TTTATATATAAATTTTGAATTTGATATAA
Found at i:1555833 original size:14 final size:14
Alignment explanation
Indices: 1555814--1555851 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
1555804 ACACAATTAG
1555814 AATTTCATATATAT
1 AATTTCATATATAT
1555828 AATTTCATATATAT
1 AATTTCATATATAT
* *
1555842 GATTGCATAT
1 AATTTCATAT
1555852 TAAATTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.47
Consensus pattern (14 bp):
AATTTCATATATAT
Found at i:1557370 original size:80 final size:80
Alignment explanation
Indices: 1557220--1557373 Score: 227
Period size: 80 Copynumber: 1.9 Consensus size: 80
1557210 GCAATAACGA
* *
1557220 GAATGAAAAAAGACAAAAATATTATTGAAAAATTAAATAGGTAGCCAAAACTTTGTCACCTCTTA
1 GAATGAAAAAAGACAAAAAAATTATTGAAAAATTAAATAGGTAGCCAAAACTTTGTCACCTCTCA
*
1557285 GTAGTAGATGGTAGG
66 ATAGTAGATGGTAGG
* * * * * *
1557300 GAATGAAAAAAGACAAAAAAATTATTGAAAAATTAAATATGTAGTCAAAATTTTGTTATCTGTCA
1 GAATGAAAAAAGACAAAAAAATTATTGAAAAATTAAATAGGTAGCCAAAACTTTGTCACCTCTCA
1557365 ATAGTAGAT
66 ATAGTAGAT
1557374 ACTTGTAGAG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 65 1.00
ACGTcount: A:0.47, C:0.08, G:0.16, T:0.29
Consensus pattern (80 bp):
GAATGAAAAAAGACAAAAAAATTATTGAAAAATTAAATAGGTAGCCAAAACTTTGTCACCTCTCA
ATAGTAGATGGTAGG
Found at i:1575431 original size:26 final size:26
Alignment explanation
Indices: 1575367--1575454 Score: 69
Period size: 26 Copynumber: 3.5 Consensus size: 26
1575357 TATGAGTGTT
*
1575367 CTGA-TATATGGCTCTTCGTGAGTTTC
1 CTGATTAT-TGGCTCTTCGTGAGCTTC
** ** *
1575393 CCAATTAAAGGCTCTTTGTGAGCTTC
1 CTGATTATTGGCTCTTCGTGAGCTTC
*
1575419 CTGATTATTGGCTCTCCG-GAGCTT-
1 CTGATTATTGGCTCTTCGTGAGCTTC
1575443 CTGA-TA-TGGCTC
1 CTGATTATTGGCTC
1575455 GCATGAACTT
Statistics
Matches: 49, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
22 6 0.12
23 2 0.04
24 4 0.08
25 6 0.12
26 29 0.59
27 2 0.04
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGATTATTGGCTCTTCGTGAGCTTC
Found at i:1575611 original size:25 final size:25
Alignment explanation
Indices: 1575531--1575667 Score: 98
Period size: 25 Copynumber: 5.4 Consensus size: 25
1575521 ATTGGCTAGC
* * *
1575531 ATGAGCTTCCTGAT-TATGGCTCTT
1 ATGAGCTTCCCGTTATATGGCTCAT
** * **
1575555 ATGAGCTTCCCGTTATACAGCCCGG
1 ATGAGCTTCCCGTTATATGGCTCAT
* *
1575580 ATAAGCTTCCCGTTACATGGCTCAT
1 ATGAGCTTCCCGTTATATGGCTCAT
* *
1575605 ATGAGCTTCCTGTTATATGGCTCAAG
1 ATGAGCTTCCCGTTATATGGCTC-AT
* *
1575631 AGAGAGCTTCCCGTT-TATGTGCTCAC
1 A-TGAGCTTCCCGTTATATG-GCTCAT
1575657 ATGAGCATTCC
1 ATGAGC-TTCC
1575668 TGAATATGAA
Statistics
Matches: 86, Mismatches: 22, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
24 12 0.14
25 47 0.55
26 12 0.14
27 15 0.17
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATATGGCTCAT
Found at i:1581225 original size:29 final size:28
Alignment explanation
Indices: 1581173--1581227 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
1581163 TTATGTGTGT
*
1581173 ATTTTTATTTTAGTCACTTAATTTTAAA
1 ATTTTTATTTTAGTCACTAAATTTTAAA
1581201 ATTTTTAATTTTAGT-ACTAATATTTTA
1 ATTTTT-ATTTTAGTCACTAA-ATTTTA
1581228 TTGTGCGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (28 bp):
ATTTTTATTTTAGTCACTAAATTTTAAA
Found at i:1584140 original size:25 final size:25
Alignment explanation
Indices: 1584086--1584154 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
1584076 ATGGCTCTCT
* * *
1584086 AGAGCTTCCCGTTACATGGCTAACA
1 AGAGCTTCCCATTATATGGATAACA
* *
1584111 TGAGCTTCCCTTTATATGGATCAA-A
1 AGAGCTTCCCATTATATGGAT-AACA
1584136 AGAGCTTCCCAATTATATG
1 AGAGCTTCCC-ATTATATG
1584155 CTCGTATAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
25 27 0.75
26 9 0.25
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (25 bp):
AGAGCTTCCCATTATATGGATAACA
Found at i:1592176 original size:26 final size:27
Alignment explanation
Indices: 1592124--1592186 Score: 119
Period size: 26 Copynumber: 2.4 Consensus size: 27
1592114 ATAAAAAATA
1592124 ACCAAAATATTATAACTTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTATTT
1592151 ACCAAAATATTATAA-TTTTTTTATTT
1 ACCAAAATATTATAACTTTTTTTATTT
1592177 ACCAAAATAT
1 ACCAAAATAT
1592187 ACTAAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 21 0.58
27 15 0.42
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (27 bp):
ACCAAAATATTATAACTTTTTTTATTT
Found at i:1592276 original size:27 final size:27
Alignment explanation
Indices: 1592246--1592324 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
1592236 GGCCAATCAC
*
1592246 ATTGGCGGCACCAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAATGGTGCCAAAGAG
* *
1592273 ATTGGCGGCACCAATGGTGCCAATGTG
1 ATTGGCGGCACCAATGGTGCCAAAGAG
* *
1592300 ATTGGCAGCACCAATGGTGCGAAAG
1 ATTGGCGGCACCAATGGTGCCAAAG
1592325 GACTAAAATG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.29, C:0.22, G:0.33, T:0.16
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAAAGAG
Found at i:1593083 original size:27 final size:27
Alignment explanation
Indices: 1592999--1593084 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 27
1592989 TTTTAGTCCT
* *
1592999 TTGGCACCATTGGTGCCACCAATCACA
1 TTGGCACCATTGGTGCCGCCAATCTCA
*
1593026 TTGGCACCATTGGTGCCGCCAATCTCT
1 TTGGCACCATTGGTGCCGCCAATCTCA
* * *
1593053 TTGGCACCTTTGGTGCCGCCAATGTGA
1 TTGGCACCATTGGTGCCGCCAATCTCA
1593080 TTGGC
1 TTGGC
1593085 CTGATCAGGC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.17, C:0.30, G:0.24, T:0.28
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCTCA
Found at i:1593130 original size:20 final size:20
Alignment explanation
Indices: 1593105--1593143 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1593095 TGTTGTCAAG
* *
1593105 TTTTTTTTTCTATTTTTTGT
1 TTTTTTTTTATATATTTTGT
1593125 TTTTTTTTTATATATTTTG
1 TTTTTTTTTATATATTTTG
1593144 GTAAATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.03, G:0.05, T:0.82
Consensus pattern (20 bp):
TTTTTTTTTATATATTTTGT
Found at i:1593168 original size:28 final size:28
Alignment explanation
Indices: 1593132--1593257 Score: 245
Period size: 28 Copynumber: 4.5 Consensus size: 28
1593122 TGTTTTTTTT
1593132 TTAT-ATATTTTGGTAAATAAAAAAAAG
1 TTATAATATTTTGGTAAATAAAAAAAAG
1593159 TTATAATATTTTGGTAAATAAAAAAAAG
1 TTATAATATTTTGGTAAATAAAAAAAAG
1593187 TTATAATATTTTGGTAAATAAAAAAAAG
1 TTATAATATTTTGGTAAATAAAAAAAAG
1593215 TTATAATATTTTGGTAAATAAAAAAAAG
1 TTATAATATTTTGGTAAATAAAAAAAAG
1593243 TTATAATATTTTGGT
1 TTATAATATTTTGGT
1593258 TATTTTTTAT
Statistics
Matches: 98, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
27 4 0.04
28 94 0.96
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (28 bp):
TTATAATATTTTGGTAAATAAAAAAAAG
Found at i:1596414 original size:22 final size:23
Alignment explanation
Indices: 1596387--1596466 Score: 76
Period size: 22 Copynumber: 3.5 Consensus size: 23
1596377 CACTAATGAA
1596387 CAGAGAGCACTAAAGTGTTATA-
1 CAGAGAGCACTAAAGTGTTATAT
* *
1596409 CAGAGAGCAC-AGATGTGCTA-AT
1 CAGAGAGCACTA-AAGTGTTATAT
* *
1596431 CGGAGAGCACTAACGTGTTAATAAT
1 CAGAGAGCACTAAAGTGTT-AT-AT
1596456 CAGAGAGCACT
1 CAGAGAGCACT
1596467 GATCTGCTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
21 2 0.04
22 30 0.65
23 2 0.04
25 12 0.26
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (23 bp):
CAGAGAGCACTAAAGTGTTATAT
Found at i:1596449 original size:44 final size:47
Alignment explanation
Indices: 1596389--1596477 Score: 130
Period size: 47 Copynumber: 2.0 Consensus size: 47
1596379 CTAATGAACA
*
1596389 GAGAGCACTAAAGTGTT-AT-A-CAGAGAGCACAGATGTGCTAATCG
1 GAGAGCACTAAAGTGTTAATAATCAGAGAGCACAGATCTGCTAATCG
* *
1596433 GAGAGCACTAACGTGTTAATAATCAGAGAGCACTGATCTGCTAAT
1 GAGAGCACTAAAGTGTTAATAATCAGAGAGCACAGATCTGCTAAT
1596478 AATCAGAGAG
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
44 16 0.41
45 2 0.05
46 1 0.03
47 20 0.51
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (47 bp):
GAGAGCACTAAAGTGTTAATAATCAGAGAGCACAGATCTGCTAATCG
Found at i:1596461 original size:25 final size:25
Alignment explanation
Indices: 1596427--1596488 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
1596417 ACAGATGTGC
* *
1596427 TAATCGGAGAGCACT-AACGTGTTAA
1 TAATCAGAGAGCACTGAAC-TGCTAA
*
1596452 TAATCAGAGAGCACTGATCTGCTAA
1 TAATCAGAGAGCACTGAACTGCTAA
1596477 TAATCAGAGAGC
1 TAATCAGAGAGC
1596489 GCGCTAAGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 31 0.94
26 2 0.06
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.23
Consensus pattern (25 bp):
TAATCAGAGAGCACTGAACTGCTAA
Found at i:1597147 original size:47 final size:47
Alignment explanation
Indices: 1597052--1597165 Score: 126
Period size: 47 Copynumber: 2.4 Consensus size: 47
1597042 ACACCAAAGC
*
1597052 CATAGCCCAACCATGTTCTTACACAGAAGCACATATCACACTGATGT
1 CATAGCCCAACCATGGTCTTACACAGAAGCACATATCACACTGATGT
* * * *
1597099 CATAGCCCAACTATGGTCTTATACGGAAATCACATATCACA-T-ATTGT
1 CATAGCCCAACCATGGTCTTACACAG-AAGCACATATCACACTGA-TGT
*
1597146 CAT-GATCCAACCATGGTCTT
1 CATAG-CCCAACCATGGTCTT
1597166 TTCCGTCAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
46 2 0.04
47 42 0.74
48 13 0.23
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.27
Consensus pattern (47 bp):
CATAGCCCAACCATGGTCTTACACAGAAGCACATATCACACTGATGT
Found at i:1598942 original size:29 final size:30
Alignment explanation
Indices: 1598884--1598943 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
1598874 AGATAGTCAT
* * *
1598884 TTAACAATAAAAAAATTTCATTTCAGGCAC
1 TTAACAATAAAAAAAATACATTTCAAGCAC
1598914 TTAA-AATAAAAAAAATACAATTT-AAGCAC
1 TTAACAATAAAAAAAATAC-ATTTCAAGCAC
1598943 T
1 T
1598944 CATGTTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.53, C:0.13, G:0.05, T:0.28
Consensus pattern (30 bp):
TTAACAATAAAAAAAATACATTTCAAGCAC
Found at i:1600648 original size:23 final size:23
Alignment explanation
Indices: 1600604--1600648 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
1600594 AATGCCATTG
**
1600604 TATTATGTTTTATTATTTAATAC
1 TATTATGTTTTATTATCAAATAC
1600627 TATTATGTGTTTATT-TCAAATA
1 TATTATGT-TTTATTATCAAATA
1600649 TGTTAGCACT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (23 bp):
TATTATGTTTTATTATCAAATAC
Found at i:1602178 original size:6 final size:6
Alignment explanation
Indices: 1602167--1602194 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
1602157 TTTTTTAAAA
1602167 ATTATC ATTATC ATTATC ATTATC ATTA
1 ATTATC ATTATC ATTATC ATTATC ATTA
1602195 AATTTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTATC
Found at i:1611448 original size:29 final size:29
Alignment explanation
Indices: 1611416--1611473 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
1611406 TATTTGTCTC
* *
1611416 ATGTTACATTTTAGTTATTTATGTTTAAA
1 ATGTTACATTTTAGTCATTTATATTTAAA
*
1611445 ATGTTACGTTTTAGTCATTTATATTTAAA
1 ATGTTACATTTTAGTCATTTATATTTAAA
1611474 TGTCAAGGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.31, C:0.05, G:0.10, T:0.53
Consensus pattern (29 bp):
ATGTTACATTTTAGTCATTTATATTTAAA
Found at i:1617775 original size:12 final size:12
Alignment explanation
Indices: 1617758--1617782 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1617748 AACCTCGCTT
1617758 ATATTTTTCCGA
1 ATATTTTTCCGA
1617770 ATATTTTTCCGA
1 ATATTTTTCCGA
1617782 A
1 A
1617783 AGGAATCCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (12 bp):
ATATTTTTCCGA
Found at i:1629705 original size:22 final size:23
Alignment explanation
Indices: 1629672--1629714 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
1629662 TAAATTTGAT
*
1629672 TTTTAAAAAAATATGTATATTCA
1 TTTTAAAAAAATATATATATTCA
*
1629695 TTTT-AAAAAATGTATATATT
1 TTTTAAAAAAATATATATATT
1629715 GAATTTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (23 bp):
TTTTAAAAAAATATATATATTCA
Found at i:1629721 original size:22 final size:22
Alignment explanation
Indices: 1629677--1629722 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
1629667 TTGATTTTTA
* *
1629677 AAAAAATATGTATATTCATTTT
1 AAAAAATATATATATTCAATTT
* *
1629699 AAAAAATGTATATATTGAATTT
1 AAAAAATATATATATTCAATTT
1629721 AA
1 AA
1629723 TATAATATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (22 bp):
AAAAAATATATATATTCAATTT
Found at i:1635371 original size:19 final size:20
Alignment explanation
Indices: 1635347--1635384 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1635337 TTTATTTGTA
*
1635347 AAAAAATT-ATAATATAATT
1 AAAAAATTCATAAAATAATT
1635366 AAAAAATTCATAAAATAAT
1 AAAAAATTCATAAAATAAT
1635385 CAAAGTACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAAAATTCATAAAATAATT
Found at i:1642459 original size:2 final size:2
Alignment explanation
Indices: 1642452--1642487 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
1642442 CGAATGCAAC
*
1642452 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1642488 CAATTGCTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1642460 original size:30 final size:32
Alignment explanation
Indices: 1642400--1642463 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
1642390 CACTTATTTT
1642400 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
1642433 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
1642464 ATATATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:1642566 original size:48 final size:48
Alignment explanation
Indices: 1642456--1642569 Score: 176
Period size: 48 Copynumber: 2.4 Consensus size: 48
1642446 TGCAACATAT
*
1642456 ATATATATATATATATATATATACATATATATCAATTGCTTAGACCAA
1 ATATATGTATATATATATATATACATATATATCAATTGCTTAGACCAA
* * *
1642504 ATA-ATGCAACATATATATATATACATATCTATCAATTGCTTAGACCAA
1 ATATATG-TATATATATATATATACATATATATCAATTGCTTAGACCAA
1642552 ATATATGTATATATATAT
1 ATATATGTATATATATAT
1642570 GCTCATCAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 2 0.03
48 53 0.91
49 3 0.05
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (48 bp):
ATATATGTATATATATATATATACATATATATCAATTGCTTAGACCAA
Found at i:1642785 original size:41 final size:41
Alignment explanation
Indices: 1642740--1642895 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
1642730 ACCGGCTCTT
*
1642740 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1642781 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1642822 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
1642863 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
1642896 TAACGATAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 98 0.92
42 2 0.02
43 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:1644447 original size:13 final size:13
Alignment explanation
Indices: 1644429--1644453 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1644419 CCATCGAATG
1644429 CACACAAAATAAA
1 CACACAAAATAAA
1644442 CACACAAAATAA
1 CACACAAAATAA
1644454 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:1648696 original size:46 final size:44
Alignment explanation
Indices: 1648636--1648750 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
1648626 ACAGAACAGA
* *
1648636 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
1648682 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
1648726 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
1648751 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:1648731 original size:44 final size:45
Alignment explanation
Indices: 1648636--1648769 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
1648626 ACAGAACAGA
* *
1648636 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
1648682 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
1648726 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
1648770 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:1654082 original size:13 final size:13
Alignment explanation
Indices: 1654064--1654088 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1654054 CAATCAGATG
1654064 CACACAAAATAAA
1 CACACAAAATAAA
1654077 CACACAAAATAA
1 CACACAAAATAA
1654089 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:1656798 original size:358 final size:358
Alignment explanation
Indices: 1656141--1656856 Score: 1432
Period size: 358 Copynumber: 2.0 Consensus size: 358
1656131 TTGCATGTCA
1656141 ATTATACCATTAATAATAGTGATGGACAATATTGGACAAGGTTAGGTGGATTTTTATGTTAATTT
1 ATTATACCATTAATAATAGTGATGGACAATATTGGACAAGGTTAGGTGGATTTTTATGTTAATTT
1656206 ATTTAGGATAAAATAGTAATTTATGTTTTAATGTTTATTAAATTAAAACAAAACAATTTATTTCT
66 ATTTAGGATAAAATAGTAATTTATGTTTTAATGTTTATTAAATTAAAACAAAACAATTTATTTCT
1656271 TCATTCTCATCATCTTTGACCGAAACTTGAAGAAAGAAATAGCTTAAAAAGTTTGCTAGGGTTCG
131 TCATTCTCATCATCTTTGACCGAAACTTGAAGAAAGAAATAGCTTAAAAAGTTTGCTAGGGTTCG
1656336 GCACATTAGGGGGTTAATTGGTAAGTGATTTTGACTCAGTTTTTAATGATTTTTACGTTTTTGAG
196 GCACATTAGGGGGTTAATTGGTAAGTGATTTTGACTCAGTTTTTAATGATTTTTACGTTTTTGAG
1656401 ATCTTTGCTTTGTATTCTAGCTAGCTTGTGTACTAATTTTTGAATTGGTTGATGAATTTGTGAGT
261 ATCTTTGCTTTGTATTCTAGCTAGCTTGTGTACTAATTTTTGAATTGGTTGATGAATTTGTGAGT
1656466 TGCCATTGATGATAGCTTGATTTTTTTTTTGTT
326 TGCCATTGATGATAGCTTGATTTTTTTTTTGTT
1656499 ATTATACCATTAATAATAGTGATGGACAATATTGGACAAGGTTAGGTGGATTTTTATGTTAATTT
1 ATTATACCATTAATAATAGTGATGGACAATATTGGACAAGGTTAGGTGGATTTTTATGTTAATTT
1656564 ATTTAGGATAAAATAGTAATTTATGTTTTAATGTTTATTAAATTAAAACAAAACAATTTATTTCT
66 ATTTAGGATAAAATAGTAATTTATGTTTTAATGTTTATTAAATTAAAACAAAACAATTTATTTCT
1656629 TCATTCTCATCATCTTTGACCGAAACTTGAAGAAAGAAATAGCTTAAAAAGTTTGCTAGGGTTCG
131 TCATTCTCATCATCTTTGACCGAAACTTGAAGAAAGAAATAGCTTAAAAAGTTTGCTAGGGTTCG
1656694 GCACATTAGGGGGTTAATTGGTAAGTGATTTTGACTCAGTTTTTAATGATTTTTACGTTTTTGAG
196 GCACATTAGGGGGTTAATTGGTAAGTGATTTTGACTCAGTTTTTAATGATTTTTACGTTTTTGAG
1656759 ATCTTTGCTTTGTATTCTAGCTAGCTTGTGTACTAATTTTTGAATTGGTTGATGAATTTGTGAGT
261 ATCTTTGCTTTGTATTCTAGCTAGCTTGTGTACTAATTTTTGAATTGGTTGATGAATTTGTGAGT
1656824 TGCCATTGATGATAGCTTGATTTTTTTTTTGTT
326 TGCCATTGATGATAGCTTGATTTTTTTTTTGTT
1656857 TAATGATGAA
Statistics
Matches: 358, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
358 358 1.00
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.43
Consensus pattern (358 bp):
ATTATACCATTAATAATAGTGATGGACAATATTGGACAAGGTTAGGTGGATTTTTATGTTAATTT
ATTTAGGATAAAATAGTAATTTATGTTTTAATGTTTATTAAATTAAAACAAAACAATTTATTTCT
TCATTCTCATCATCTTTGACCGAAACTTGAAGAAAGAAATAGCTTAAAAAGTTTGCTAGGGTTCG
GCACATTAGGGGGTTAATTGGTAAGTGATTTTGACTCAGTTTTTAATGATTTTTACGTTTTTGAG
ATCTTTGCTTTGTATTCTAGCTAGCTTGTGTACTAATTTTTGAATTGGTTGATGAATTTGTGAGT
TGCCATTGATGATAGCTTGATTTTTTTTTTGTT
Found at i:1657556 original size:42 final size:43
Alignment explanation
Indices: 1657505--1657604 Score: 139
Period size: 42 Copynumber: 2.3 Consensus size: 43
1657495 GATTTGAGAT
*
1657505 TTACGTGTAAGACCATATCTGGGACATTAGCATCG-TATATGA
1 TTACGTGTAAGACCATATCTGGGACAGTAGCATCGATATATGA
* * * *
1657547 TTACGTGTAAGACCCTATCTGGGACAGTGGCATTGATATTTGA
1 TTACGTGTAAGACCATATCTGGGACAGTAGCATCGATATATGA
*
1657590 TTACTTGTAAGACCA
1 TTACGTGTAAGACCA
1657605 CGTTTGGGAC
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 31 0.62
43 19 0.38
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (43 bp):
TTACGTGTAAGACCATATCTGGGACAGTAGCATCGATATATGA
Found at i:1657613 original size:43 final size:44
Alignment explanation
Indices: 1657466--1657624 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 44
1657456 TGTGTTATCA
* * *
1657466 TGTAAGACCACGTCTT-GGACGTTGGCATGGAT-TTGAGATTTACG
1 TGTAAGACCACGTATTGGGACGTTGGCATTGATATT-TGA-TTACG
* * * *
1657510 TGTAAGACCA--TATCTGGGACATTAGCATCG-TATATGATTACG
1 TGTAAGACCACGTAT-TGGGACGTTGGCATTGATATTTGATTACG
*
1657552 TGTAAGACC-C-TATCTGGGACAG-TGGCATTGATATTTGATTACT
1 TGTAAGACCACGTAT-TGGGAC-GTTGGCATTGATATTTGATTACG
1657595 TGTAAGACCACGT-TTGGGACGTTGGCATTG
1 TGTAAGACCACGTATTGGGACGTTGGCATTG
1657625 TACGAGATTT
Statistics
Matches: 95, Mismatches: 11, Indels: 19
0.76 0.09 0.15
Matches are distributed among these distances:
42 33 0.35
43 37 0.39
44 24 0.25
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (44 bp):
TGTAAGACCACGTATTGGGACGTTGGCATTGATATTTGATTACG
Found at i:1675374 original size:27 final size:27
Alignment explanation
Indices: 1675344--1675395 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
1675334 AACTCTAAAC
1675344 CCAAACTCAAACCCTAAACCTTAAATT
1 CCAAACTCAAACCCTAAACCTTAAATT
* * *
1675371 CCAAATTCAAACCTTGAACCTTAAA
1 CCAAACTCAAACCCTAAACCTTAAA
1675396 GTTCAGGGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.44, C:0.31, G:0.02, T:0.23
Consensus pattern (27 bp):
CCAAACTCAAACCCTAAACCTTAAATT
Found at i:1676283 original size:14 final size:15
Alignment explanation
Indices: 1676259--1676292 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
1676249 AGATGAAACT
*
1676259 AATAGTTAAAAATTG
1 AATAGTTAAAAATTA
1676274 AATA-TTAAAAATTA
1 AATAGTTAAAAATTA
1676288 AATAG
1 AATAG
1676293 AGCTTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (15 bp):
AATAGTTAAAAATTA
Found at i:1679249 original size:12 final size:12
Alignment explanation
Indices: 1679214--1679252 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 12
1679204 AAACTGAAAA
1679214 AATGGAAAATTG
1 AATGGAAAATTG
1679226 AATGGTGAAAAATTG
1 AAT-G-G-AAAATTG
1679241 AATGGAAAATTG
1 AATGGAAAATTG
1679253 CATTTGATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 10 0.42
13 2 0.08
14 2 0.08
15 10 0.42
ACGTcount: A:0.49, C:0.00, G:0.26, T:0.26
Consensus pattern (12 bp):
AATGGAAAATTG
Found at i:1680278 original size:9 final size:10
Alignment explanation
Indices: 1680240--1680280 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
1680230 AGATAAATAT
*
1680240 TTAAAAATTA
1 TTAAGAATTA
1680250 TTAAGAATTA
1 TTAAGAATTA
1680260 -TAAGAGATTA
1 TTAAGA-ATTA
1680270 TTAA-AATTA
1 TTAAGAATTA
1680279 TT
1 TT
1680281 TTAAATTACA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
9 11 0.39
10 14 0.50
11 3 0.11
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.41
Consensus pattern (10 bp):
TTAAGAATTA
Found at i:1683162 original size:95 final size:93
Alignment explanation
Indices: 1683001--1683186 Score: 336
Period size: 95 Copynumber: 2.0 Consensus size: 93
1682991 AATCTGATCG
1683001 CAATTAAGCGGGATAAAGAAATGACATAATAAAATAAAATTTGAGATAAACCCCAAAATTACACA
1 CAATTAAGCGGGATAAAGAAATGACATAATAAAATAAAATTTGAGATAAACCCCAAAATTACACA
*
1683066 TTAATTTTGATTTAATGTGAAATTGTCA
66 TTAATTTTGATTTAATATGAAATTGTCA
*
1683094 CAATTAAGCGGGATAAAGATAAATGACATAATAAAATAAAATTTGAGATAAACCTCAAAATTACA
1 CAATTAAGCGGGATAAAG--AAATGACATAATAAAATAAAATTTGAGATAAACCCCAAAATTACA
1683159 CATTAATTTTGATTTAATATGAAATTGT
64 CATTAATTTTGATTTAATATGAAATTGT
1683187 TTACATGAAT
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
93 18 0.20
95 71 0.80
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (93 bp):
CAATTAAGCGGGATAAAGAAATGACATAATAAAATAAAATTTGAGATAAACCCCAAAATTACACA
TTAATTTTGATTTAATATGAAATTGTCA
Found at i:1714217 original size:31 final size:31
Alignment explanation
Indices: 1714179--1714241 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
1714169 TACCACAAAT
*
1714179 AGAACTCTGGGTATGGTAATGGGAGAGAATC
1 AGAACTCTGGATATGGTAATGGGAGAGAATC
1714210 AGAACTCTGGATATGGTAATGGGAGAGAATC
1 AGAACTCTGGATATGGTAATGGGAGAGAATC
1714241 A
1 A
1714242 TTTTTGGTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.10, G:0.33, T:0.22
Consensus pattern (31 bp):
AGAACTCTGGATATGGTAATGGGAGAGAATC
Found at i:1717820 original size:16 final size:16
Alignment explanation
Indices: 1717799--1717867 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
1717789 TTTGGTTCGC
1717799 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
1717815 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
1717831 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
1717848 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
1717864 TGTA
1 TGTA
1717868 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:1717845 original size:33 final size:32
Alignment explanation
Indices: 1717799--1717867 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
1717789 TTTGGTTCGC
1717799 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1717831 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
1717864 TGTA
1 TGTA
1717868 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:1717932 original size:44 final size:45
Alignment explanation
Indices: 1717848--1717938 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
1717838 GGATTAGAGG
* * *
1717848 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
1717893 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
1717937 TG
1 TG
1717939 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:1718124 original size:18 final size:17
Alignment explanation
Indices: 1718103--1718137 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
1718093 TTATTATTAA
*
1718103 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
1718121 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
1718138 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:1718291 original size:188 final size:190
Alignment explanation
Indices: 1717974--1718351 Score: 706
Period size: 188 Copynumber: 2.0 Consensus size: 190
1717964 AAAAAACTAA
1717974 AATGACTAGAATACCCTTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAAT
1 AATGACTAGAATACCCTTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAAT
1718039 TATAATAAGATTATTATTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAA
66 TATAATAAGATTATTATTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAA
*
1718104 TATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATAATTAATATTCTTATAT
131 TATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATAATCAATATTCTTATAT
1718162 AATGACTAGAATACCCTTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAAT
1 AATGACTAGAATACCCTTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAAT
* * *
1718227 TTTAATAAGATTATTATTATCAGTAATAAATAATTTAATCATATTTTAACATAATTATTATTAAA
66 TATAATAAGATTATTATTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAA
1718292 TATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATAATCAATATTCTTATAT
131 TATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATAATCAATATTCTTATAT
1718352 GAATTTACTC
Statistics
Matches: 184, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
188 150 0.82
189 2 0.01
190 32 0.17
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.46
Consensus pattern (190 bp):
AATGACTAGAATACCCTTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAAT
TATAATAAGATTATTATTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAA
TATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATAATCAATATTCTTATAT
Found at i:1718312 original size:18 final size:19
Alignment explanation
Indices: 1718291--1718327 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
1718281 TTATTATTAA
1718291 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
1718309 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
1718328 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:1718435 original size:59 final size:58
Alignment explanation
Indices: 1718369--1718554 Score: 157
Period size: 59 Copynumber: 3.1 Consensus size: 58
1718359 CTCAAATCAT
* *
1718369 AATATATGATACTATAAAATATAATTTGAAATAATTAATATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTT-AAATAATTATTATTAAATATATTTTAATAAA
* * * * *
1718428 AATATATGAT-TTAATAAAATTCTTAATATTAAAT-ATTCTTATATGAAT-T-TTCTAA-AATCA
1 AATATATGATACT-ATAAAA-T-ATAAT-TTAAATAATTATTAT-TAAATATATTTTAATAA--A
* **
1718488 TAATATATAATACTATAAAATATAATTTAACATAATTATTATTAAATATAAGTTAATAAA
1 -AATATATGATACTATAAAATATAATTTAA-ATAATTATTATTAAATATATTTTAATAAA
1718548 AATATAT
1 AATATAT
1718555 AATTTATCAT
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
58 6 0.06
59 38 0.39
60 19 0.19
61 30 0.31
62 5 0.05
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (58 bp):
AATATATGATACTATAAAATATAATTTAAATAATTATTATTAAATATATTTTAATAAA
Found at i:1718492 original size:120 final size:120
Alignment explanation
Indices: 1718271--1718560 Score: 456
Period size: 120 Copynumber: 2.4 Consensus size: 120
1718261 TTAATCATAT
1718271 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATA
* * *
1718336 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
64 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
1718393 TTTGAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
1718457 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
** *
1718513 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTA
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
1718561 TCATCATACT
Statistics
Matches: 154, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
119 2 0.01
120 109 0.71
121 2 0.01
122 39 0.25
123 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:1721452 original size:28 final size:26
Alignment explanation
Indices: 1721410--1721462 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
1721400 ACGCTGTTGG
1721410 TTTTTAAAAAATTTAAAAAGTTATAAC
1 TTTTTAAAAAATTTAAAAAG-TATAAC
*
1721437 TTTTTAAAAAATTTTAAGAAGTATAA
1 TTTTTAAAAAA-TTTAAAAAGTATAA
1721463 AAATTATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.42
Consensus pattern (26 bp):
TTTTTAAAAAATTTAAAAAGTATAAC
Done.