Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 51 of 153
Found at i:16893508 original size:43 final size:43
Alignment explanation
Indices: 16893479--16893575 Score: 142
Period size: 43 Copynumber: 2.3 Consensus size: 43
16893469 TAGCCCAGCT
16893479 ATGGTCTTACACGAAATCAAATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGAAATCAAATAACGATGCCAATGTCCCAGAC
* * *
16893522 ATGGTCTTACACGTAATCACATAATGATGCCAATGT-CCAGAC
1 ATGGTCTTACACGAAATCAAATAACGATGCCAATGTCCCAGAC
**
16893564 ATTCTCTTACAC
1 ATGGTCTTACAC
16893576 ATAAACACAA
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 16 0.33
43 33 0.67
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCAAATAACGATGCCAATGTCCCAGAC
Found at i:16893575 original size:42 final size:43
Alignment explanation
Indices: 16893440--16893584 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 43
16893430 CCAAATATGG
* * ** * *
16893440 TCTTACATGTTATCACATATGGATGCCGATAG-CCCAG-CTATGG
1 TCTTACACGTAATCACATAACGATGCCAAT-GTCCCAGAC-ATGC
* * *
16893483 TCTTACACGAAATCAAATAACGATGCCAATGTCCCAGACATGG
1 TCTTACACGTAATCACATAACGATGCCAATGTCCCAGACATGC
* *
16893526 TCTTACACGTAATCACATAATGATGCCAATGT-CCAGACATTC
1 TCTTACACGTAATCACATAACGATGCCAATGTCCCAGACATGC
* *
16893568 TCTTACACATAAACACA
1 TCTTACACGTAATCACA
16893585 ACTCGTTAAT
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
42 24 0.28
43 61 0.71
44 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (43 bp):
TCTTACACGTAATCACATAACGATGCCAATGTCCCAGACATGC
Found at i:16895830 original size:33 final size:33
Alignment explanation
Indices: 16895775--16895849 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 33
16895765 TGGCCCTGCC
* *
16895775 ATGGTCTTACATTCGTAGTGCCATA-ACACAGTT
1 ATGGTCTTACATTCGTAATGCCATAGAC-CAGCT
* *
16895808 ATGGTCTTATCATTTG-AATGCCATAGTCCAGCT
1 ATGGTCTTA-CATTCGTAATGCCATAGACCAGCT
16895841 ATGGTCTTA
1 ATGGTCTTA
16895850 AATACAAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
33 30 0.83
34 6 0.17
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (33 bp):
ATGGTCTTACATTCGTAATGCCATAGACCAGCT
Found at i:16898445 original size:10 final size:10
Alignment explanation
Indices: 16898432--16898456 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
16898422 CTAAGGGTGG
16898432 AAAATGGCTT
1 AAAATGGCTT
16898442 AAAATGGCTT
1 AAAATGGCTT
16898452 AAAAT
1 AAAAT
16898457 AGCCTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.28
Consensus pattern (10 bp):
AAAATGGCTT
Found at i:16902766 original size:15 final size:15
Alignment explanation
Indices: 16902746--16902777 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
16902736 AAAATATGGG
16902746 GCCGAAGAGTTTAGA
1 GCCGAAGAGTTTAGA
16902761 GCCGAAGAGTTTAGA
1 GCCGAAGAGTTTAGA
16902776 GC
1 GC
16902778 TACTATTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.16, G:0.34, T:0.19
Consensus pattern (15 bp):
GCCGAAGAGTTTAGA
Found at i:16910771 original size:19 final size:20
Alignment explanation
Indices: 16910728--16910772 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
16910718 TAACCAACTA
*
16910728 TTTTAAGAAAAACCATTAAT
1 TTTTAGGAAAAACCATTAAT
* *
16910748 ATTTAGGAAAAACC-TTAGT
1 TTTTAGGAAAAACCATTAAT
16910767 TTTTAG
1 TTTTAG
16910773 AGAGAACTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (20 bp):
TTTTAGGAAAAACCATTAAT
Found at i:16919342 original size:27 final size:26
Alignment explanation
Indices: 16919312--16919423 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
16919302 AGGAAGCGTC
*
16919312 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATTTGAT
*
16919339 CTGGTGGCTCTGCCACA-TATTTCTATT
1 CTGGTGGCTCTGCCACATTATTT-GA-T
*
16919366 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATTTG-AT
* * * *
16919394 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATTTGAT
16919420 CTGG
1 CTGG
16919424 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
25 5 0.07
26 7 0.10
27 40 0.55
28 16 0.22
29 5 0.07
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATTTGAT
Found at i:16919422 original size:54 final size:54
Alignment explanation
Indices: 16919312--16919423 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
16919302 AGGAAGCGTC
* * *
16919312 CTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCCACATATTTCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * * *
16919366 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
16919420 CTGG
1 CTGG
16919424 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:16921294 original size:27 final size:26
Alignment explanation
Indices: 16921264--16921356 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 26
16921254 AGGAAGCGTC
*
16921264 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATTTGAT
*
16921291 CTGGTGGCTCTGCCACA-TATTTCTATT
1 CTGGTGGCTCTGCCACATTATTT-GA-T
*
16921318 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATTTG-AT
*
16921346 CTGGTGACTCT
1 CTGGTGGCTCT
16921357 AGTTTCCCCA
Statistics
Matches: 56, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
25 5 0.09
26 2 0.04
27 32 0.57
28 12 0.21
29 5 0.09
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATTTGAT
Found at i:16928890 original size:27 final size:26
Alignment explanation
Indices: 16928850--16928961 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
16928840 AGGAAGCGTC
*
16928850 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
16928877 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
16928904 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
16928932 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
16928958 CTGG
1 CTGG
16928962 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 52 0.68
28 17 0.22
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:16928954 original size:54 final size:54
Alignment explanation
Indices: 16928850--16928961 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
16928840 AGGAAGCGTC
*
16928850 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
16928904 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
16928958 CTGG
1 CTGG
16928962 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:16935153 original size:55 final size:53
Alignment explanation
Indices: 16935028--16935216 Score: 209
Period size: 55 Copynumber: 3.5 Consensus size: 53
16935018 AACTTACCAT
* * * *
16935028 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCATAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAACTCATCAA
* * *
16935081 TACCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AACTCATCAA
** * * * *
16935136 TGCCATGTATTGACATGGTCTTACATGATTTCCTTGCATTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAACTCATCAA
*
16935190 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
16935217 ATATCCTTAT
Statistics
Matches: 113, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.02
53 33 0.29
54 34 0.30
55 42 0.37
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAACTCATCAA
Found at i:16935466 original size:44 final size:44
Alignment explanation
Indices: 16935417--16935500 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
16935407 TCCTTAACCG
*
16935417 TCAATTCCTCCTTAA-ATGCCATGTTATGAA-CATGGACTTTTCCA
1 TCAATTCCTCCTTAATATG-CATGGTAT-AACCATGGACTTTTCCA
* *
16935461 TCAATTCTTCCTTAATTTGCATGGTATAACCATGGACTTT
1 TCAATTCCTCCTTAATATGCATGGTATAACCATGGACTTT
16935501 GAGATATCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
43 2 0.06
44 31 0.89
45 2 0.06
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (44 bp):
TCAATTCCTCCTTAATATGCATGGTATAACCATGGACTTTTCCA
Found at i:16943453 original size:175 final size:175
Alignment explanation
Indices: 16943162--16943514 Score: 706
Period size: 175 Copynumber: 2.0 Consensus size: 175
16943152 CAAATCAACC
16943162 AAAATGGTACCATTTCAAGACATTTATAAGCAACTAAAACCAGCCAATTCATACACATATTATGT
1 AAAATGGTACCATTTCAAGACATTTATAAGCAACTAAAACCAGCCAATTCATACACATATTATGT
16943227 CATCTTTACACAACATTTCAACTACTCAATTCCATAACCAAAATATAAAAAAATCATTAAACTTG
66 CATCTTTACACAACATTTCAACTACTCAATTCCATAACCAAAATATAAAAAAATCATTAAACTTG
16943292 TATGACTTCTAAATGCATTTCATCATCACCTATTTCATGCCACAA
131 TATGACTTCTAAATGCATTTCATCATCACCTATTTCATGCCACAA
16943337 AAAATGGTACCATTTCAAGACATTTATAAGCAACTAAAACCAGCCAATTCATACACATATTATGT
1 AAAATGGTACCATTTCAAGACATTTATAAGCAACTAAAACCAGCCAATTCATACACATATTATGT
16943402 CATCTTTACACAACATTTCAACTACTCAATTCCATAACCAAAATATAAAAAAATCATTAAACTTG
66 CATCTTTACACAACATTTCAACTACTCAATTCCATAACCAAAATATAAAAAAATCATTAAACTTG
16943467 TATGACTTCTAAATGCATTTCATCATCACCTATTTCATGCCACAA
131 TATGACTTCTAAATGCATTTCATCATCACCTATTTCATGCCACAA
16943512 AAA
1 AAA
16943515 TTACCATTTC
Statistics
Matches: 178, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
175 178 1.00
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.30
Consensus pattern (175 bp):
AAAATGGTACCATTTCAAGACATTTATAAGCAACTAAAACCAGCCAATTCATACACATATTATGT
CATCTTTACACAACATTTCAACTACTCAATTCCATAACCAAAATATAAAAAAATCATTAAACTTG
TATGACTTCTAAATGCATTTCATCATCACCTATTTCATGCCACAA
Found at i:16951345 original size:40 final size:40
Alignment explanation
Indices: 16951261--16951444 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
16951251 TTGAATGCTG
* * * *
16951261 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
16951300 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
16951341 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
16951381 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
16951421 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
16951445 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:16951398 original size:80 final size:81
Alignment explanation
Indices: 16951261--16951441 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
16951251 TTGAATGCTG
* *
16951261 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
16951325 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
16951341 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
16951402 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
16951421 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
16951442 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:16959595 original size:15 final size:15
Alignment explanation
Indices: 16959575--16959604 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
16959565 CAAACTCTTG
16959575 TGATCAGTAAAAATA
1 TGATCAGTAAAAATA
16959590 TGATCAGTAAAAATA
1 TGATCAGTAAAAATA
16959605 CTTCAAAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (15 bp):
TGATCAGTAAAAATA
Found at i:16961926 original size:41 final size:41
Alignment explanation
Indices: 16961883--16962016 Score: 118
Period size: 40 Copynumber: 3.4 Consensus size: 41
16961873 GACCATGATT
*
16961883 CGATGAGACACTGGGTGTCATATTATTACTTCAAATAAATT
1 CGATGAGACACTGGGTGTCATATTATTACTTCAAATAAATC
** * ** **
16961924 CGATGAGGTA-TTGG-GT-ATA-TACTTACTTC-AGCAAGGC
1 CGATGAGACACTGGGTGTCATATTA-TTACTTCAAATAAATC
* *
16961961 CGATGAGACACTGGGTGTCAAATTATTACTTCAAAT-TATC
1 CGATGAGACACTGGGTGTCATATTATTACTTCAAATAAATC
*
16962001 CGATGAGGCACTGGGT
1 CGATGAGACACTGGGT
16962017 CCATATTGGT
Statistics
Matches: 69, Mismatches: 18, Indels: 13
0.69 0.18 0.13
Matches are distributed among these distances:
37 13 0.19
38 13 0.19
39 4 0.06
40 28 0.41
41 11 0.16
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (41 bp):
CGATGAGACACTGGGTGTCATATTATTACTTCAAATAAATC
Found at i:16965748 original size:203 final size:203
Alignment explanation
Indices: 16965399--16965805 Score: 796
Period size: 203 Copynumber: 2.0 Consensus size: 203
16965389 AACAACAAGC
16965399 ACCGATCCAAGGACTCGAAACTCAGATAGGCCAGCTGTCCAAAACTAATCTCTGAACGACCACAA
1 ACCGATCCAAGGACTCGAAACTCAGATAGGCCAGCTGTCCAAAACTAATCTCTGAACGACCACAA
*
16965464 GGTAGCCTACCAAGTAATACTGAACCTAATCCGAGGGAATACCTCAATGCAATTGGTGCTCAAGA
66 GGTAGCCTACCAAGTAATACTGAACCTAATCCGAGGGAATACCTCAATGCAATTGGCGCTCAAGA
16965529 TAAGGAAGGATTCATTGCACCTGAGCCAGAATTACAACAAGACAACGCGATGAACAAAGGACGAG
131 TAAGGAAGGATTCATTGCACCTGAGCCAGAATTACAACAAGACAACGCGATGAACAAAGGACGAG
16965594 AAGAGGTA
196 AAGAGGTA
16965602 ACCGATCCAAGGACTCGAAACTCAGATAGGCCAGCTGTCCAAAACTAATCTCTGAACGACCACAA
1 ACCGATCCAAGGACTCGAAACTCAGATAGGCCAGCTGTCCAAAACTAATCTCTGAACGACCACAA
*
16965667 GGTAGCCTACCAAGTAATACTGAACCTAATCCGAGGGAATACCTCATTGCAATTGGCGCTCAAGA
66 GGTAGCCTACCAAGTAATACTGAACCTAATCCGAGGGAATACCTCAATGCAATTGGCGCTCAAGA
16965732 TAAGGAAGGATTCATTGCACCTGAGCCAGAATTACAACAAGACAACGCGATGAACAAAGGACGAG
131 TAAGGAAGGATTCATTGCACCTGAGCCAGAATTACAACAAGACAACGCGATGAACAAAGGACGAG
16965797 AAGAGGTA
196 AAGAGGTA
16965805 A
1 A
16965806 ACAATAATGA
Statistics
Matches: 202, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
203 202 1.00
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.17
Consensus pattern (203 bp):
ACCGATCCAAGGACTCGAAACTCAGATAGGCCAGCTGTCCAAAACTAATCTCTGAACGACCACAA
GGTAGCCTACCAAGTAATACTGAACCTAATCCGAGGGAATACCTCAATGCAATTGGCGCTCAAGA
TAAGGAAGGATTCATTGCACCTGAGCCAGAATTACAACAAGACAACGCGATGAACAAAGGACGAG
AAGAGGTA
Found at i:16967516 original size:17 final size:17
Alignment explanation
Indices: 16967496--16967537 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
16967486 TTATTTTTCT
16967496 TTTATTTTTAAGATTCA
1 TTTATTTTTAAGATTCA
*
16967513 TTTAATTTTAAGATTCA
1 TTTATTTTTAAGATTCA
*
16967530 TTTGTTTT
1 TTTATTTT
16967538 CCTTTTCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.26, C:0.05, G:0.07, T:0.62
Consensus pattern (17 bp):
TTTATTTTTAAGATTCA
Found at i:16971161 original size:7 final size:7
Alignment explanation
Indices: 16971145--16971175 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
16971135 TAATAATGTT
*
16971145 ATATATA
1 ATATAAA
16971152 ATATAAA
1 ATATAAA
16971159 ATATAAA
1 ATATAAA
16971166 ATATAAA
1 ATATAAA
16971173 ATA
1 ATA
16971176 AATTAAAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
ATATAAA
Found at i:16982767 original size:37 final size:37
Alignment explanation
Indices: 16982717--16982800 Score: 168
Period size: 37 Copynumber: 2.3 Consensus size: 37
16982707 CGGGTCACCT
16982717 CAAAACGACGCTGTTTTGGGCATATTAAGCTATGCCC
1 CAAAACGACGCTGTTTTGGGCATATTAAGCTATGCCC
16982754 CAAAACGACGCTGTTTTGGGCATATTAAGCTATGCCC
1 CAAAACGACGCTGTTTTGGGCATATTAAGCTATGCCC
16982791 CAAAACGACG
1 CAAAACGACG
16982801 TCATTTAGTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (37 bp):
CAAAACGACGCTGTTTTGGGCATATTAAGCTATGCCC
Found at i:16987431 original size:19 final size:19
Alignment explanation
Indices: 16987407--16987468 Score: 97
Period size: 19 Copynumber: 3.2 Consensus size: 19
16987397 AATCTTTAAG
16987407 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
16987426 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
16987445 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
16987466 GAT
1 GAT
16987469 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
19 31 0.79
21 8 0.21
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:16992421 original size:13 final size:13
Alignment explanation
Indices: 16992405--16992452 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
16992395 AAAAAAAGGG
16992405 GAAAAAAAGAAAA
1 GAAAAAAAGAAAA
*
16992418 GAAAAAGAGAAAA
1 GAAAAAAAGAAAA
* *
16992431 AATAAAAATAAAAAA
1 GA-AAAAA-AGAAAA
16992446 GAAAAAA
1 GAAAAAA
16992453 TGGAGAGGCC
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
13 13 0.46
14 9 0.32
15 6 0.21
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.04
Consensus pattern (13 bp):
GAAAAAAAGAAAA
Found at i:16992430 original size:20 final size:20
Alignment explanation
Indices: 16992407--16992452 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
16992397 AAAAAGGGGA
*
16992407 AAAAAAGAAAAGA-AAAAGAG
1 AAAAAAGAAAA-ATAAAAAAG
*
16992427 AAAAAATAAAAATAAAAAAG
1 AAAAAAGAAAAATAAAAAAG
16992447 AAAAAA
1 AAAAAA
16992453 TGGAGAGGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.85, C:0.00, G:0.11, T:0.04
Consensus pattern (20 bp):
AAAAAAGAAAAATAAAAAAG
Found at i:16992453 original size:20 final size:22
Alignment explanation
Indices: 16992405--16992453 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
16992395 AAAAAAAGGG
16992405 GAAAAAA-AGAAAAGAAAAAGA
1 GAAAAAATAGAAAAGAAAAAGA
*
16992426 GAAAAAATA-AAAATAAAAA-A
1 GAAAAAATAGAAAAGAAAAAGA
16992446 GAAAAAAT
1 GAAAAAAT
16992454 GGAGAGGCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 9 0.35
21 16 0.62
22 1 0.04
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (22 bp):
GAAAAAATAGAAAAGAAAAAGA
Found at i:16993512 original size:44 final size:44
Alignment explanation
Indices: 16993455--16994111 Score: 306
Period size: 44 Copynumber: 14.9 Consensus size: 44
16993445 GATCCAAGAT
* * *
16993455 GATTTGGCATCTCTTTATTAGCAGAGAGTAGATTGAAGACAACA
1 GATTTGGCATCTCTGTATTAGCAGAGAGCAGATCGAAGACAACA
** * ** *
16993499 GATTTGGTGTCTCTGTATTGGCAGAGAGCAGATCGAAGATGACT
1 GATTTGGCATCTCTGTATTAGCAGAGAGCAGATCGAAGACAACA
*
16993543 GATTTGGCATCTCTGTATTCAGCAGAGAGCAGATCGAAGACATAGCT
1 GATTTGGCATCTCTGTATT-AGCAGAGAGCAGATCGAAGACA-A-CA
* * ** * * *
16993590 GATTTGGC-TTTCATGTGTTTACGTTGA-AGCAAATCTAAG---A-T
1 GATTTGGCATCTC-TGT-ATTA-GCAGAGAGCAGATCGAAGACAACA
* * *
16993631 GATTTGGCATCTCTGTATTAGCAGAGAGAAGATTGAAGATAACA
1 GATTTGGCATCTCTGTATTAGCAGAGAGCAGATCGAAGACAACA
* * * * **
16993675 GAATTGGCATCTCTGTATTGGCAGAAAGCAGATCAAAGATGACA
1 GATTTGGCATCTCTGTATTAGCAGAGAGCAGATCGAAGACAACA
* *
16993719 GATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGACATAGCTA
1 GATTTGGCATCTCTGTATT-AGCAGAGAGCAGATCGAAGACA-A-C-A
* * * * *
16993767 -ATTTGGCTTCCACGTGT-TTA-AATTGA-AGCA-AGTCTAAG---A-T
1 GATTTGGCAT-CTC-TGTATTAGCA--GAGAGCAGA-TCGAAGACAACA
* * * *
16993807 GATTTGGCATCTTTGTATTGGCAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTAGCAGAGAGCAGATCGAAGACAACA
* * * * ** *
16993851 GATTTGGCATCTCTATATTGGTAGAGAGCAGATCAAAGATGATA
1 GATTTGGCATCTCTGTATTAGCAGAGAGCAGATCGAAGACAACA
* * * *
16993895 GATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAAACATAGCT
1 GATTTGGCATCTCTGTATT-AGCAGAGAGCAGATCGAAGACA-A-CA
* * ** * *
16993942 GATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAAG---A-T
1 GATTTGGCAT-CTC-TGTATTA-GCAGAGAGCAGA-TCGAAGACAACA
* *
16993983 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-A
1 GATTTGGCATCTCTGTATTAGCAGAGAGCAGATCGAAGACA-ACA
** * * *
16994027 GATTTGGTGTCTCTGTATT-GTCAGAGAGCA-AGTTGAAGATAGCA
1 GATTTGGCATCTCTGTATTAG-CAGAGAGCAGA-TCGAAGACAACA
* * *
16994071 GATTTGGCATCCCTGTGTTTA-CA-AGGAACAGATCGAAGACA
1 GATTTGGCATCTCTGT-ATTAGCAGA-GAGCAGATCGAAGACA
16994112 TAGTAGATCT
Statistics
Matches: 464, Mismatches: 98, Indels: 102
0.70 0.15 0.15
Matches are distributed among these distances:
39 14 0.03
40 36 0.08
41 33 0.07
42 3 0.01
43 7 0.02
44 224 0.48
45 55 0.12
46 8 0.02
47 59 0.13
48 19 0.04
49 6 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTAGCAGAGAGCAGATCGAAGACAACA
Found at i:16993554 original size:88 final size:87
Alignment explanation
Indices: 16993454--16994056 Score: 372
Period size: 88 Copynumber: 6.9 Consensus size: 87
16993444 AGATCCAAGA
* * * *
16993454 TGATTTGGCATCTCTTTATT-AGCAGAGAGTAGATTGAAGACAACAGATTTGGTGTCTCTGTATT
1 TGATTTGGCATCTCTGTATTCAGCAGAGAGCAGATCGAAGACAACAGATTTGGTATCTCTGTATT
16993518 GGCAGAGAGCAGATCGAAGATGAC
66 GGCAGA-AGCAGATC-AAGATGAC
* * *
16993542 TGATTTGGCATCTCTGTATTCAGCAGAGAGCAGATCGAAGACATAGCTGATTTGGCTTTCATGTG
1 TGATTTGGCATCTCTGTATTCAGCAGAGAGCAGATCGAAGACA-A-CAGATTTGG-TATC-TCTG
* ** * *
16993607 T-TTACGTTGAAGCAAATCTA-A-GA-
62 TATT-GGCAGAAGCAGATCAAGATGAC
* * * * *
16993630 TGATTTGGCATCTCTGTATT-AGCAGAGAGAAGATTGAAGATAACAGAATTGGCATCTCTGTATT
1 TGATTTGGCATCTCTGTATTCAGCAGAGAGCAGATCGAAGACAACAGATTTGGTATCTCTGTATT
16993694 GGCAGAAAGCAGATCAAAGATGAC
66 GGCAG-AAGCAGATC-AAGATGAC
* * * *
16993718 AGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGACATAGCTA-ATTTGGCT-TCCACG
1 TGATTTGGCATCTCTGTATTCAGCAGAGAGCAGATCGAAGACA-A-C-AGATTTGG-TAT-CTC-
** *
16993781 TGT-TT-AAATTGAAGCA-AGTCTA-A-GA-
60 TGTATTGGCA--GAAGCAGA-TCAAGATGAC
* * * * * *
16993806 TGATTTGGCATCTTTGTATT-GGCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTATATT
1 TGATTTGGCATCTCTGTATTCAGCAGAGAGCAGATCGAAGACAACAGATTTGGTATCTCTGTATT
*
16993870 GGTAGAGAGCAGATCAAAGATGA-
66 GGCAGA-AGCAGATC-AAGATGAC
* * * * *
16993893 TAGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAAACATAGCTGATTTGGCT-TCCACG
1 T-GATTTGGCATCTCTGTATTCAGCAGAGAGCAGATCGAAGACA-A-CAGATTTGG-TAT-CTC-
* ** *
16993957 TGT-TTACGTTGAAGCA-AGTCTA-A-GA-
60 TGTATT-GGCAGAAGCAGA-TCAAGATGAC
* * *
16993982 TGATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAGATAGA-AGATTTGGTGTCTCTGTAT
1 TGATTTGGCATCTCTGTATTCAGCAGAGAGCAGATCGAAGACA-ACAGATTTGGTATCTCTGTAT
*
16994045 TGTCAGAGAGCA
65 TGGCAGA-AGCA
16994057 AGTTGAAGAT
Statistics
Matches: 403, Mismatches: 69, Indels: 90
0.72 0.12 0.16
Matches are distributed among these distances:
83 15 0.04
84 32 0.08
85 27 0.07
86 3 0.01
87 64 0.16
88 113 0.28
89 63 0.16
90 5 0.01
91 30 0.07
92 34 0.08
93 17 0.04
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (87 bp):
TGATTTGGCATCTCTGTATTCAGCAGAGAGCAGATCGAAGACAACAGATTTGGTATCTCTGTATT
GGCAGAAGCAGATCAAGATGAC
Found at i:16993749 original size:176 final size:176
Alignment explanation
Indices: 16993450--16994086 Score: 920
Period size: 176 Copynumber: 3.6 Consensus size: 176
16993440 AAGAAGATCC
* * * * **
16993450 AAGATGATTTGGCATCTCTTTATTAGCAGAGAGTAGATTGAAGACAACAGATTTGGTGTCTCTGT
1 AAGATGATTTGGCATCTCTGTATTAGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGT
* * * *
16993515 ATTGGCAGAGAGCAGATCGAAGATGACTGATTTGGCATCTCTGTATTCAGCAGAGAGCAGATCGA
66 ATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGA
* * *
16993580 AGACATAGCTGATTTGGCTTTCATGTGTTTACGTTGAAGCAAATCT
131 AGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCT
* * *
16993626 AAGATGATTTGGCATCTCTGTATTAGCAGAGAGAAGATTGAAGATAACAGAATTGGCATCTCTGT
1 AAGATGATTTGGCATCTCTGTATTAGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGT
*
16993691 ATTGGCAGAAAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGA
66 ATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGA
* **
16993756 AGACATAGCTAATTTGGCTTCCACGTGTTTAAATTGAAGCAAGTCT
131 AGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCT
* * * *
16993802 AAGATGATTTGGCATCTTTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTAT
1 AAGATGATTTGGCATCTCTGTATTAGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGT
* *
16993867 ATTGGTAGAGAGCAGATCAAAGATGATAGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGA
66 ATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGA
*
16993932 AAACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCT
131 AGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCT
* **
16993978 AAGATGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-AGATTTGGTGTCTCTG
1 AAGATGATTTGGCATCTCTGTATTAGCAGAGAGCAGATCGAAGATA-ACAGATTTGGCATCTCTG
* ** *
16994042 TATTGTCAGAGAGCA-AGTTGAAGAT-AGCAGATTTGGCATCCCTGT
65 TATTGGCAGAGAGCAGA-TCAAAGATGA-CAGATTTGGCATCTCTGT
16994087 GTTTACAAGG
Statistics
Matches: 416, Mismatches: 42, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
175 2 0.00
176 414 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (176 bp):
AAGATGATTTGGCATCTCTGTATTAGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGT
ATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGA
AGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCT
Found at i:16994407 original size:44 final size:45
Alignment explanation
Indices: 16994279--16994427 Score: 147
Period size: 45 Copynumber: 3.3 Consensus size: 45
16994269 TTTACATCGA
* * * * *
16994279 AGCAGATCCAAGATGACAGATTTGACATCTTTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAAATTTGGCATCTCTGTATTAGACGGGG
* * * **
16994324 AGCATATCGGAGATAACATATTTGGCATCTCTGCGTTAGACGGGG
1 AGCAGATCGAAGATAACAAATTTGGCATCTCTGTATTAGACGGGG
* * * *
16994369 AGCAGATTGAAGA-AGCAAATTTGGCGTCTCTGTATTAGATGGGG
1 AGCAGATCGAAGATAACAAATTTGGCATCTCTGTATTAGACGGGG
* *
16994413 AACAGATCAAAGATA
1 AGCAGATCGAAGATA
16994428 GCAGATATCG
Statistics
Matches: 82, Mismatches: 21, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
44 35 0.43
45 47 0.57
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.26
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAAATTTGGCATCTCTGTATTAGACGGGG
Found at i:16994799 original size:19 final size:19
Alignment explanation
Indices: 16994775--16994843 Score: 115
Period size: 19 Copynumber: 3.7 Consensus size: 19
16994765 AATCTTTAAG
16994775 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
16994794 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
16994813 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
16994830 GATTTGCAATCTTA
1 GATATGCAATCTTA
16994844 AATTCTTGAA
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
17 16 0.34
19 31 0.66
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:16994805 original size:36 final size:35
Alignment explanation
Indices: 16994765--16994842 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 35
16994755 ATGGAAATAT
16994765 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTT-A-GATATGACAATCTTAGATATGATATGC
*
16994801 AATC-TTAGATATGATACAATCTTAGATATGATTTGC
1 AATCTTTAGATATG--ACAATCTTAGATATGATATGC
16994837 AATCTT
1 AATCTT
16994843 AAATTCTTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
33 6 0.16
34 1 0.03
35 2 0.05
36 27 0.73
37 1 0.03
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (35 bp):
AATCTTTAGATATGACAATCTTAGATATGATATGC
Found at i:17004937 original size:3 final size:3
Alignment explanation
Indices: 17004929--17004982 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
17004919 TATTAACATG
17004929 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
17004977 AAT AAT
1 AAT AAT
17004983 GGCAAAAAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:17007553 original size:50 final size:52
Alignment explanation
Indices: 17007495--17007610 Score: 166
Period size: 50 Copynumber: 2.3 Consensus size: 52
17007485 TTAATAAAGT
*
17007495 CATGCATTATGTAACTCTCATGTTAGCT-AAGTTTGCATCA-TAAATTACA-A
1 CATGCATTATGTAACTCCCATGTTAGCTAAAGTTTGCATCATTAAATTA-AGA
* *
17007545 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATTAAGT
1 CATGCATTATGTAACTCCCATGTTAGCTAAAGTTTGCATCATTAAATTAAGA
*
17007597 CATGCATTAAGTAA
1 CATGCATTATGTAA
17007611 TTCATTTGTT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
50 26 0.44
51 13 0.22
52 20 0.34
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (52 bp):
CATGCATTATGTAACTCCCATGTTAGCTAAAGTTTGCATCATTAAATTAAGA
Found at i:17012607 original size:13 final size:13
Alignment explanation
Indices: 17012559--17012614 Score: 53
Period size: 13 Copynumber: 4.2 Consensus size: 13
17012549 CAAATAAACC
17012559 AAAATTGTATTACT
1 AAAATT-TATTACT
**
17012573 AAAATCCATCT-CT
1 AAAATTTAT-TACT
17012586 AAAATTTTATTACT
1 AAAA-TTTATTACT
17012600 AAAATTTATTA-T
1 AAAATTTATTACT
17012612 AAA
1 AAA
17012615 CATTAAAGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
12 4 0.11
13 16 0.46
14 15 0.43
ACGTcount: A:0.46, C:0.11, G:0.02, T:0.41
Consensus pattern (13 bp):
AAAATTTATTACT
Found at i:17014382 original size:20 final size:20
Alignment explanation
Indices: 17014357--17014409 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
17014347 ATTTTTAATA
*
17014357 TATTTTTAATAATTTATATT
1 TATTTTTAAGAATTTATATT
** *
17014377 TATTTTTAAGCTTTTTTATT
1 TATTTTTAAGAATTTATATT
17014397 TATTTTT-AGAATT
1 TATTTTTAAGAATT
17014410 ATTGTTAAGA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (20 bp):
TATTTTTAAGAATTTATATT
Found at i:17016059 original size:42 final size:41
Alignment explanation
Indices: 17015983--17016136 Score: 193
Period size: 42 Copynumber: 3.7 Consensus size: 41
17015973 CTAAGTTTAT
* * *
17015983 GTGTAAGACCATATCT-GGATATGGAATCAGTATGATACTTC
1 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGA-TTC
17016024 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTC
1 GTGTAAGACCATATCTAGGATATGGCATCAATATGAGA-TTC
* * * *
17016066 GTATAAGACCATAGCTAGGCTATTGGCATCCATATGAGATTAC
1 GTGTAAGACCATATCTAGGATA-TGGCATCAATATGAGATT-C
*
17016109 ATGTAAGACCATATCTAGGATATGGCAT
1 GTGTAAGACCATATCTAGGATATGGCAT
17016137 TGGTATGGTA
Statistics
Matches: 98, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
41 16 0.16
42 48 0.49
43 34 0.35
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (41 bp):
GTGTAAGACCATATCTAGGATATGGCATCAATATGAGATTC
Found at i:17023634 original size:43 final size:42
Alignment explanation
Indices: 17023512--17023664 Score: 202
Period size: 42 Copynumber: 3.6 Consensus size: 42
17023502 TAAGTTTATG
* * *
17023512 TGTAAGACCATATCT-GGATATGGAAT-CAGTATGATACTTCA
1 TGTAAGACCATATCTAGGATATGGCATCCA-TATGAGATTTCA
* *
17023553 TGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTCG
1 TGTAAGACCATATCTAGGATATGGCATCCATATGAGATTTCA
* * *
17023595 TGTAAGACCATAGCTAGGCTATTGGCATCCATATGAGATTACA
1 TGTAAGACCATATCTAGGATA-TGGCATCCATATGAGATTTCA
17023638 TGTAAGACCATATCTAGGATATGGCAT
1 TGTAAGACCATATCTAGGATATGGCAT
17023665 TGGTATGGTA
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
41 15 0.15
42 44 0.45
43 38 0.39
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGGCATCCATATGAGATTTCA
Found at i:17026644 original size:27 final size:27
Alignment explanation
Indices: 17026577--17026646 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
17026567 ATGGAGGAAG
* * *
17026577 TACT-ATACTGGTGACTATGTCACATT
1 TACTGATACTGGTGGCTATGCCACAAT
*
17026603 TACTGTTACTGGTGGCTATGCCACAAT
1 TACTGATACTGGTGGCTATGCCACAAT
17026630 TACTGATACTGGTGGCT
1 TACTGATACTGGTGGCT
17026647 TTACTACATT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
26 4 0.11
27 34 0.89
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (27 bp):
TACTGATACTGGTGGCTATGCCACAAT
Found at i:17028629 original size:13 final size:13
Alignment explanation
Indices: 17028611--17028640 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
17028601 AATTAATATA
*
17028611 ATAATATATTAAT
1 ATAATATAATAAT
17028624 ATAATATAATAAT
1 ATAATATAATAAT
17028637 ATAA
1 ATAA
17028641 AACAAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATAATATAATAAT
Found at i:17028667 original size:23 final size:25
Alignment explanation
Indices: 17028631--17028680 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
17028621 AATATAATAT
*
17028631 AATAATATAAAAC-AAA-AAAAAGA
1 AATAAAATAAAACAAAAGAAAAAGA
*
17028654 AATAAAATAGAACAAAAGAAAAAGA
1 AATAAAATAAAACAAAAGAAAAAGA
17028679 AA
1 AA
17028681 CATATAGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 11 0.48
24 3 0.13
25 9 0.39
ACGTcount: A:0.78, C:0.04, G:0.08, T:0.10
Consensus pattern (25 bp):
AATAAAATAAAACAAAAGAAAAAGA
Found at i:17029691 original size:44 final size:44
Alignment explanation
Indices: 17029513--17029677 Score: 127
Period size: 44 Copynumber: 3.6 Consensus size: 44
17029503 TGTACAGGGA
* * * *
17029513 TACTTCGACCTTGGGTCAATGAGGCACTAATAGTGTCGTATTGT
1 TACTTCGACTTTGTGTCGATGAGGCACTAATAGTGTCGTACTGT
* * ** *
17029557 TACTTCGACTTCGTGTCGATTAGGCACTTCGT-GTGTTGTACTGT
1 TACTTCGACTTTGTGTCGATGAGGCAC-TAATAGTGTCGTACTGT
* * * * *
17029601 TTCTAT-TACTTCGGTTTAATCTGATAAGGCACTAATAGTGTCGTACTGT
1 TACT-TCGACTT---TGT-GTC-GATGAGGCACTAATAGTGTCGTACTGT
17029650 TACTTCGACTTTGTGTCGATGAGGCACT
1 TACTTCGACTTTGTGTCGATGAGGCACT
17029678 TCGTGTGTTG
Statistics
Matches: 89, Mismatches: 23, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
44 49 0.55
45 5 0.06
46 2 0.02
47 1 0.01
48 5 0.06
49 27 0.30
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (44 bp):
TACTTCGACTTTGTGTCGATGAGGCACTAATAGTGTCGTACTGT
Found at i:17029703 original size:93 final size:93
Alignment explanation
Indices: 17029534--17029727 Score: 298
Period size: 93 Copynumber: 2.1 Consensus size: 93
17029524 TGGGTCAATG
* *
17029534 AGGCACTAATAGTGTCGTATTGTTACTTCGACTTCGTGTCGATTAGGCACTTCGTGTGTTGTACT
1 AGGCACTAATAGTGTCGTACTGTTACTTCGACTTCGTGTCGATGAGGCACTTCGTGTGTTGTACT
* * * *
17029599 GTTTCTATTACTTCGGTTTAATCTGATA
66 ATTTCTATTACTTCAGTTTAACCCGATA
*
17029627 AGGCACTAATAGTGTCGTACTGTTACTTCGACTTTGTGTCGATGAGGCACTTCGTGTGTTGTACT
1 AGGCACTAATAGTGTCGTACTGTTACTTCGACTTCGTGTCGATGAGGCACTTCGTGTGTTGTACT
* *
17029692 ATTTTTGTTACTTCAGTTTAACCCGATA
66 ATTTCTATTACTTCAGTTTAACCCGATA
*
17029720 AGGTACTA
1 AGGCACTA
17029728 GGTACCGTAC
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 91 1.00
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.40
Consensus pattern (93 bp):
AGGCACTAATAGTGTCGTACTGTTACTTCGACTTCGTGTCGATGAGGCACTTCGTGTGTTGTACT
ATTTCTATTACTTCAGTTTAACCCGATA
Found at i:17033225 original size:11 final size:11
Alignment explanation
Indices: 17033211--17033251 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
17033201 TATTTTCTCT
17033211 CTATTTTGCTA
1 CTATTTTGCTA
*
17033222 CTATTTTACTA
1 CTATTTTGCTA
* *
17033233 TTATGTTGCTA
1 CTATTTTGCTA
17033244 CTATTTTG
1 CTATTTTG
17033252 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:17033294 original size:11 final size:11
Alignment explanation
Indices: 17033280--17033309 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
17033270 TATATAAAAG
17033280 TTATTTTATTA
1 TTATTTTATTA
17033291 TTATTTTATTA
1 TTATTTTATTA
17033302 TTATTTTA
1 TTATTTTA
17033310 AAGACATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:17033327 original size:30 final size:30
Alignment explanation
Indices: 17033293--17033349 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
17033283 TTTTATTATT
17033293 ATTTTATTATTATTTTAAAGACATTTGGTA
1 ATTTTATTATTATTTTAAAGACATTTGGTA
* * *
17033323 ATTTTGTTATTATTTTAGAGGCATTTG
1 ATTTTATTATTATTTTAAAGACATTTG
17033350 CTTGTTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.04, G:0.14, T:0.54
Consensus pattern (30 bp):
ATTTTATTATTATTTTAAAGACATTTGGTA
Found at i:17033503 original size:12 final size:12
Alignment explanation
Indices: 17033473--17033506 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
17033463 TATATATTTT
17033473 AAAATT-ATATA
1 AAAATTAATATA
17033484 AAAA-TAATATA
1 AAAATTAATATA
17033495 AAAATTAATATA
1 AAAATTAATATA
17033507 GGCAGGCCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.62
12 7 0.33
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:17036880 original size:140 final size:140
Alignment explanation
Indices: 17036623--17036884 Score: 321
Period size: 140 Copynumber: 1.9 Consensus size: 140
17036613 CACTTGTGTG
* ** *
17036623 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGT
1 AGCTAATGTAAGACATGTCTGGGACATGCATCAGCCACAAAATGAGAGCCAGAGTAAGACCATGT
* *** * * *
17036688 CTGGGATATGGCATTGGCATTAAGACGAGTGCTAGTGGAAGACATGTCTGGGACATGCTTCGGCC
66 CTGGGACATGGCATCAACATTAAGACGAGAGCCAATGGAAGACATGTCTGGGACATGCTTCGGCC
17036753 TTGAGATGTA
131 TTGAGATGTA
* ** *
17036763 AGCTAATGTAAGACATGTCTGGGACATGCATCGGTTACAAAATGATAGCCAGAGTAAGACCATGT
1 AGCTAATGTAAGACATGTCTGGGACATGCATCAGCCACAAAATGAGAGCCAGAGTAAGACCATGT
* * * *
17036828 CTGGGACATGGCATCAAC-TTGAGA-TATGAGCCAATGTAAGACTATGTTTGGGACATG
66 CTGGGACATGGCATCAACATTAAGACGA-GAGCCAATGGAAGAC-ATGTCTGGGACATG
17036885 GCATCGGCAT
Statistics
Matches: 101, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
138 1 0.01
139 16 0.16
140 84 0.83
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (140 bp):
AGCTAATGTAAGACATGTCTGGGACATGCATCAGCCACAAAATGAGAGCCAGAGTAAGACCATGT
CTGGGACATGGCATCAACATTAAGACGAGAGCCAATGGAAGACATGTCTGGGACATGCTTCGGCC
TTGAGATGTA
Found at i:17039861 original size:21 final size:21
Alignment explanation
Indices: 17039820--17039863 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
17039810 TTAAGAAATT
*
17039820 AATATAATAATATATTAATAA
1 AATATAATAATATAATAATAA
17039841 AATATAATAATAATAAT-ATAA
1 AATATAATAAT-ATAATAATAA
17039862 AA
1 AA
17039864 CAAATAAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
AATATAATAATATAATAATAA
Found at i:17041969 original size:21 final size:21
Alignment explanation
Indices: 17041945--17041998 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
17041935 CGGGATGACA
17041945 ACACGGGCGTGTC-ATAAAGAC
1 ACACGGGCGTGTCTATAAA-AC
* * * *
17041966 ACACAGGCATGTCTCTAAACC
1 ACACGGGCGTGTCTATAAAAC
17041987 ACACGGGCGTGT
1 ACACGGGCGTGT
17041999 GGTATTGTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.17
Consensus pattern (21 bp):
ACACGGGCGTGTCTATAAAAC
Found at i:17043386 original size:3 final size:3
Alignment explanation
Indices: 17043374--17043523 Score: 87
Period size: 3 Copynumber: 49.7 Consensus size: 3
17043364 GTTATTTTGC
* * *
17043374 TAT T-T TAT TAT TAA AAT TAAT TAAT TAAT TAT TAC TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT T-AT T-AT T-AT TAT TAT TAT TAT TAT TAT
* * *
17043421 T-T TCAC TAT TAT TAT TAT TAT TAA TA- TAT TCT TAT TAAT GTAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT -TAT TAT
* * * *
17043467 TAT TTT CTAC T-T TAT TAT TAT TAT T-G TAT TAT TAC TAT TAT TAT
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
17043511 CAT CA- TAT TAT TA
1 TAT TAT TAT TAT TA
17043524 AACTAATTAA
Statistics
Matches: 115, Mismatches: 21, Indels: 22
0.73 0.13 0.14
Matches are distributed among these distances:
2 9 0.08
3 88 0.77
4 17 0.15
5 1 0.01
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:17043467 original size:17 final size:15
Alignment explanation
Indices: 17043374--17043523 Score: 63
Period size: 14 Copynumber: 10.5 Consensus size: 15
17043364 GTTATTTTGC
17043374 TATT-TTATTATTAA
1 TATTATTATTATTAA
*
17043388 AATTA--ATTAATT-A
1 TATTATTATT-ATTAA
* *
17043401 -ATTATTACTATTAT
1 TATTATTATTATTAA
* *
17043415 TATTATT-TTCACTAT
1 TATTATTATT-ATTAA
17043430 TATTATTATTATTAA
1 TATTATTATTATTAA
*
17043445 TA-TATTCTTATTAA
1 TATTATTATTATTAA
*
17043459 TGTATTATTATT-TT-C
1 --TATTATTATTATTAA
* *
17043474 TACT-TTATTATTAT
1 TATTATTATTATTAA
* *
17043488 TATT-GTATTATTAC
1 TATTATTATTATTAA
* *
17043502 TATTATTATCA-TCA
1 TATTATTATTATTAA
17043516 TATTATTA
1 TATTATTA
17043524 AACTAATTAA
Statistics
Matches: 103, Mismatches: 19, Indels: 28
0.69 0.13 0.19
Matches are distributed among these distances:
12 9 0.09
13 12 0.12
14 44 0.43
15 26 0.25
16 6 0.06
17 6 0.06
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.59
Consensus pattern (15 bp):
TATTATTATTATTAA
Found at i:17043519 original size:23 final size:23
Alignment explanation
Indices: 17043479--17043523 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
17043469 TTTTCTACTT
* **
17043479 TATTATTATTATTGTATTATTAC
1 TATTATTATCATCATATTATTAC
17043502 TATTATTATCATCATATTATTA
1 TATTATTATCATCATATTATTA
17043524 AACTAATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (23 bp):
TATTATTATCATCATATTATTAC
Found at i:17043639 original size:17 final size:17
Alignment explanation
Indices: 17043609--17043641 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
17043599 ATTATTACCC
17043609 TTTTACTTTTTATTTTA
1 TTTTACTTTTTATTTTA
17043626 TTTTA-TTTTATATTTT
1 TTTTACTTTT-TATTTT
17043642 TCTCTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTACTTTTTATTTTA
Found at i:17045689 original size:15 final size:15
Alignment explanation
Indices: 17045669--17045720 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
17045659 ATGACACTTA
*
17045669 ATGAATAAGAATATC
1 ATGAATAACAATATC
*
17045684 ATGAATAACAATGTC
1 ATGAATAACAATATC
17045699 ATGCAATGACACAAT-TC
1 ATG-AAT-A-ACAATATC
17045716 ATGAA
1 ATGAA
17045721 AATAGTTAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 16 0.50
16 5 0.16
17 6 0.19
18 5 0.16
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.25
Consensus pattern (15 bp):
ATGAATAACAATATC
Found at i:17046758 original size:26 final size:26
Alignment explanation
Indices: 17046722--17046831 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
17046712 TGATACAAAT
17046722 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
17046748 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
17046774 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
17046800 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
17046826 TGATAA
1 TGATAA
17046832 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:17052210 original size:26 final size:26
Alignment explanation
Indices: 17052181--17052288 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
17052171 TGGTACAAAT
17052181 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
17052207 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
17052233 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
17052259 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
17052285 TGAT
1 TGAT
17052289 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:17053827 original size:26 final size:26
Alignment explanation
Indices: 17053775--17053827 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
17053765 TTCACAGTTT
*
17053775 TACCCCTAGGAGATAAATTATCGAAA
1 TACCCCTAGGAGATAAATTACCGAAA
* *
17053801 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGAGATAAATT-ACCGAAA
17053827 T
1 T
17053828 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGAGATAAATTACCGAAA
Found at i:17057880 original size:19 final size:19
Alignment explanation
Indices: 17057837--17057882 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
17057827 AAAATTAATA
17057837 AAATTAAT--CATTTAAAT
1 AAATTAATAACATTTAAAT
*
17057854 TAATTAATAACATTTAAA-
1 AAATTAATAACATTTAAAT
17057872 AAATATAATAA
1 AAAT-TAATAA
17057883 ATAAATTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 7 0.29
18 3 0.12
19 14 0.58
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (19 bp):
AAATTAATAACATTTAAAT
Found at i:17061994 original size:46 final size:46
Alignment explanation
Indices: 17061942--17062163 Score: 290
Period size: 46 Copynumber: 4.8 Consensus size: 46
17061932 TATTTGGGCA
* *
17061942 TCCGAGCTCGTTGAGTCGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
17061988 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
17062034 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* *
17062079 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
17062127 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
17062164 GCGGGTTACA
Statistics
Matches: 155, Mismatches: 12, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
42 3 0.02
43 4 0.03
45 3 0.02
46 106 0.68
47 29 0.19
48 3 0.02
50 4 0.03
51 3 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:17066510 original size:35 final size:34
Alignment explanation
Indices: 17066444--17066514 Score: 115
Period size: 35 Copynumber: 2.1 Consensus size: 34
17066434 GGAAGGTCTG
**
17066444 AATGAGGAAATCAAGCTGTTGATTGGGATTCTCTA
1 AATGAGGAAATCAAGCTGTTGATTGAAATTCT-TA
17066479 AATGAGGAAATCAAGCTGTTGATTGAAATTCTTA
1 AATGAGGAAATCAAGCTGTTGATTGAAATTCTTA
17066513 AA
1 AA
17066515 ATACGGGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
34 4 0.12
35 30 0.88
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.31
Consensus pattern (34 bp):
AATGAGGAAATCAAGCTGTTGATTGAAATTCTTA
Found at i:17075808 original size:10 final size:10
Alignment explanation
Indices: 17075784--17075845 Score: 61
Period size: 10 Copynumber: 6.1 Consensus size: 10
17075774 AATGAAATTC
17075784 TAAAAGATAAA
1 TAAAA-ATAAA
*
17075795 TAAAAATAAT
1 TAAAAATAAA
* *
17075805 TAAAGATAAT
1 TAAAAATAAA
*
17075815 TAAAGATAAA
1 TAAAAATAAA
*
17075825 TAAAGATAAA
1 TAAAAATAAA
*
17075835 TGAAAATAAA
1 TAAAAATAAA
17075845 T
1 T
17075846 CCTAAAAATT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
10 41 0.89
11 5 0.11
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (10 bp):
TAAAAATAAA
Found at i:17075809 original size:20 final size:20
Alignment explanation
Indices: 17075786--17075845 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
17075776 TGAAATTCTA
*
17075786 AAAGATAAATAAAAATAATT
1 AAAGATAAATAAAAATAAAT
* *
17075806 AAAGATAATTAAAGATAAAT
1 AAAGATAAATAAAAATAAAT
*
17075826 AAAGATAAATGAAAATAAAT
1 AAAGATAAATAAAAATAAAT
17075846 CCTAAAAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.23
Consensus pattern (20 bp):
AAAGATAAATAAAAATAAAT
Found at i:17075888 original size:26 final size:27
Alignment explanation
Indices: 17075842--17075894 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
17075832 AAATGAAAAT
17075842 AAATCCTAAAAATTAAATCTAA-ATAA
1 AAATCCTAAAAATTAAATCTAATATAA
* *
17075868 AAATCCTTAATAATT-ATTCTAATATAA
1 AAATCC-TAAAAATTAAATCTAATATAA
17075895 TTGAAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (27 bp):
AAATCCTAAAAATTAAATCTAATATAA
Found at i:17076635 original size:95 final size:97
Alignment explanation
Indices: 17076503--17076683 Score: 276
Period size: 95 Copynumber: 1.9 Consensus size: 97
17076493 ATTTTATTTA
* * * *
17076503 TTTATTTTTACTTAGGAATATATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACC-CA
1 TTTATTTTTACCTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA
*
17076567 CCCCAGTTATTCAGCCCAACATACTCCTAATT
66 CCCCAGTTACTCAGCCCAACATACTCCTAATT
* *
17076599 TTTATTTTT-CCTAAGAACATATCGAATCTTTTGACGCGAAGAGAGATGATAGCCAAGCACCTCA
1 TTTATTTTTACCTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA
*
17076663 CCCCGGTTACTCAGCCCAACA
66 CCCCAGTTACTCAGCCCAACA
17076684 CTTTCTTAGA
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
95 46 0.61
96 30 0.39
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (97 bp):
TTTATTTTTACCTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA
CCCCAGTTACTCAGCCCAACATACTCCTAATT
Found at i:17077483 original size:15 final size:15
Alignment explanation
Indices: 17077463--17077519 Score: 64
Period size: 15 Copynumber: 3.7 Consensus size: 15
17077453 TTAATATCTG
*
17077463 AAAATAATAAATAAT
1 AAAATAATAAATAAA
17077478 AAAATAATAAGATAAA
1 AAAATAATAA-ATAAA
17077494 ATAAATAA-AAATAAA
1 A-AAATAATAAATAAA
17077509 AATAA-AATAAA
1 AA-AATAATAAA
17077520 AATTGGGTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 3 0.08
15 21 0.57
16 7 0.19
17 6 0.16
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (15 bp):
AAAATAATAAATAAA
Found at i:17077517 original size:11 final size:11
Alignment explanation
Indices: 17077468--17077522 Score: 67
Period size: 11 Copynumber: 4.8 Consensus size: 11
17077458 ATCTGAAAAT
17077468 AATAAATAATAA
1 AATAAA-AATAA
17077480 AATAATAAGATAA
1 AATAA-AA-ATAA
*
17077493 AATAAATA-AA
1 AATAAAAATAA
17077503 AATAAAAATAA
1 AATAAAAATAA
17077514 AATAAAAAT
1 AATAAAAAT
17077523 TGGGTTGCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
10 9 0.24
11 12 0.32
12 7 0.18
13 10 0.26
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (11 bp):
AATAAAAATAA
Found at i:17077519 original size:21 final size:25
Alignment explanation
Indices: 17077468--17077519 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 25
17077458 ATCTGAAAAT
17077468 AATAAATAATAAAATAATAAGATAA
1 AATAAATAATAAAATAATAAGATAA
17077493 AATAAAT-A-AAAATAA-AA-ATAA
1 AATAAATAATAAAATAATAAGATAA
17077514 AATAAA
1 AATAAA
17077520 AATTGGGTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 10 0.37
22 2 0.07
23 7 0.26
24 1 0.04
25 7 0.26
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (25 bp):
AATAAATAATAAAATAATAAGATAA
Found at i:17079722 original size:38 final size:38
Alignment explanation
Indices: 17079671--17079748 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
17079661 GGAAAGCACG
17079671 TAGTTCAATTTGATCCTCAGTTACCCCCTGAGGTTTCA
1 TAGTTCAATTTGATCCTCAGTTACCCCCTGAGGTTTCA
17079709 TAGTTCAATTTGATCCTCAGTTACCCCCTGAGGTTTCA
1 TAGTTCAATTTGATCCTCAGTTACCCCCTGAGGTTTCA
17079747 TA
1 TA
17079749 CTAAGGCAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (38 bp):
TAGTTCAATTTGATCCTCAGTTACCCCCTGAGGTTTCA
Found at i:17081266 original size:10 final size:10
Alignment explanation
Indices: 17081247--17081306 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
17081237 TGAAATTCTA
17081247 AAAGATAAAT
1 AAAGATAAAT
17081257 ACAA-ATAAAT
1 A-AAGATAAAT
*
17081267 AAAGATAATT
1 AAAGATAAAT
17081277 AAAGATAAAT
1 AAAGATAAAT
17081287 AAAGATAAAT
1 AAAGATAAAT
17081297 GAAA-ATAAAT
1 -AAAGATAAAT
17081307 CCTAAAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:17089630 original size:17 final size:17
Alignment explanation
Indices: 17089608--17089641 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
17089598 ATAAATATTT
17089608 ATAATGAAGATCAAACC
1 ATAATGAAGATCAAACC
17089625 ATAATGAAGATCAAACC
1 ATAATGAAGATCAAACC
17089642 TAGACAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.18, G:0.12, T:0.18
Consensus pattern (17 bp):
ATAATGAAGATCAAACC
Found at i:17094800 original size:14 final size:14
Alignment explanation
Indices: 17094781--17094809 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
17094771 ACAGATGGAT
17094781 TCGTATAATTCTTA
1 TCGTATAATTCTTA
17094795 TCGTATAATTCTTA
1 TCGTATAATTCTTA
17094809 T
1 T
17094810 ATATATTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (14 bp):
TCGTATAATTCTTA
Found at i:17097657 original size:23 final size:23
Alignment explanation
Indices: 17097617--17097695 Score: 79
Period size: 24 Copynumber: 3.3 Consensus size: 23
17097607 AGCTCCTCTT
* *
17097617 GAGCTGATGGACAATAAGCTCTGAC
1 GAGCTGA-GAACAGTAAGCTCT-AC
* *
17097642 AAGCTGA-ATCAGTAAGCTCATAC
1 GAGCTGAGAACAGTAAGCTC-TAC
17097665 GAGCTGAGAACAGTAAGCTCTCAC
1 GAGCTGAGAACAGTAAGCTCT-AC
17097689 GAGCTGA
1 GAGCTGA
17097696 TATATTGGTA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
23 18 0.40
24 21 0.47
25 6 0.13
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (23 bp):
GAGCTGAGAACAGTAAGCTCTAC
Found at i:17100294 original size:34 final size:34
Alignment explanation
Indices: 17100268--17100343 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
17100258 ATAACAGTCT
17100268 AGTAACAGT-TAGGGCCTTAGCCCAATACAGTATC
1 AGTAACAGTGTA-GGCCTTAGCCCAATACAGTATC
* * * *
17100302 AGTAGCAGTGTAGGCTTTAGCCCATTACAGTAAC
1 AGTAACAGTGTAGGCCTTAGCCCAATACAGTATC
17100336 AGTAACAG
1 AGTAACAG
17100344 AAATGCAATC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
34 34 0.94
35 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (34 bp):
AGTAACAGTGTAGGCCTTAGCCCAATACAGTATC
Found at i:17100794 original size:18 final size:18
Alignment explanation
Indices: 17100766--17100800 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
17100756 AAAGTTCATA
17100766 ACACGGCCCATGTAGGCCC
1 ACACGGCCCATGT-GGCCC
17100785 ACAC-GCCCATGTGGCC
1 ACACGGCCCATGTGGCC
17100801 TACAAAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 8 0.50
19 4 0.25
ACGTcount: A:0.20, C:0.43, G:0.26, T:0.11
Consensus pattern (18 bp):
ACACGGCCCATGTGGCCC
Found at i:17109557 original size:139 final size:139
Alignment explanation
Indices: 17109401--17109677 Score: 536
Period size: 139 Copynumber: 2.0 Consensus size: 139
17109391 GGTATTTAGT
17109401 TAGTATAAATAATAATTAACTTAATTGAATTAAATACTTTGTTGGGTTTACTATTTGTTTATGAC
1 TAGTATAAATAATAATTAACTTAATTGAATTAAATACTTTGTTGGGTTTACTATTTGTTTATGAC
*
17109466 TTACTAAGCTATATTAGCTTATTTTGTGTATCCTTGTTTGTTTTATAGATATTAGAAATCAAGTT
66 ATACTAAGCTATATTAGCTTATTTTGTGTATCCTTGTTTGTTTTATAGATATTAGAAATCAAGTT
17109531 ACAGGCTCG
131 ACAGGCTCG
*
17109540 TAGTATAAATAATAATTAACTTAATTGAATTAAATACTTTGTTGGGTTTACTATTTGTTTGTGAC
1 TAGTATAAATAATAATTAACTTAATTGAATTAAATACTTTGTTGGGTTTACTATTTGTTTATGAC
17109605 ATACTAAGCTATATTAGCTTATTTTGTGTATCCTTGTTTGTTTTATAGATATTAGAAATCAAGTT
66 ATACTAAGCTATATTAGCTTATTTTGTGTATCCTTGTTTGTTTTATAGATATTAGAAATCAAGTT
17109670 ACAGGCTC
131 ACAGGCTC
17109678 AGGGATCATC
Statistics
Matches: 136, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
139 136 1.00
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.45
Consensus pattern (139 bp):
TAGTATAAATAATAATTAACTTAATTGAATTAAATACTTTGTTGGGTTTACTATTTGTTTATGAC
ATACTAAGCTATATTAGCTTATTTTGTGTATCCTTGTTTGTTTTATAGATATTAGAAATCAAGTT
ACAGGCTCG
Found at i:17115906 original size:16 final size:16
Alignment explanation
Indices: 17115885--17115917 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
17115875 ATAAAAACAT
*
17115885 AAAATAAAAATAATAA
1 AAAATAAAAAAAATAA
17115901 AAAATAAAAAAAATAA
1 AAAATAAAAAAAATAA
17115917 A
1 A
17115918 GATAAAATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (16 bp):
AAAATAAAAAAAATAA
Found at i:17115922 original size:22 final size:22
Alignment explanation
Indices: 17115875--17115924 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
17115865 AAATTTGTTT
*
17115875 ATAAAAACATAAAATAAAAATA
1 ATAAAAACATAAAATAAAAAAA
17115897 ATAAAAA-ATAAAA-AAAATAAA
1 ATAAAAACATAAAATAAAA-AAA
17115918 GATAAAA
1 -ATAAAA
17115925 TGAAATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 4 0.16
21 8 0.32
22 13 0.52
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (22 bp):
ATAAAAACATAAAATAAAAAAA
Found at i:17126065 original size:18 final size:18
Alignment explanation
Indices: 17126016--17126055 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
17126006 ATCAGGCAAG
17126016 TTTCACATACATGTATTT
1 TTTCACATACATGTATTT
17126034 TTTCACATACATGTATTT
1 TTTCACATACATGTATTT
17126052 TTTC
1 TTTC
17126056 CATGTCATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.25, C:0.17, G:0.05, T:0.53
Consensus pattern (18 bp):
TTTCACATACATGTATTT
Found at i:17130795 original size:102 final size:102
Alignment explanation
Indices: 17130619--17130823 Score: 365
Period size: 102 Copynumber: 2.0 Consensus size: 102
17130609 CCCAGTTTAA
17130619 GCTGCACTAATACAGGTGCTTTCATTAATAGGTCTTTCAATCGGTTGAAACTTTGTTGACATTCA
1 GCTGCACTAATACAGGTGCTTTCATTAATAGGTCTTTCAATCGGTTGAAACTTTGTTGACATTCA
17130684 TCAGTCCACTCAAACTTTACATCTTTCTGCAATAATC
66 TCAGTCCACTCAAACTTTACATCTTTCTGCAATAATC
* * * *
17130721 GCTGCACTTATACATGTGTTTTCGTTAATAGGTCTTTCAATCGGTTGAAACTTTGTTGACATTCA
1 GCTGCACTAATACAGGTGCTTTCATTAATAGGTCTTTCAATCGGTTGAAACTTTGTTGACATTCA
*
17130786 TCAGTCCACTCGAACTTTACATCTTTCTGCAATAATC
66 TCAGTCCACTCAAACTTTACATCTTTCTGCAATAATC
17130823 G
1 G
17130824 AGTCATTGGA
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 98 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.38
Consensus pattern (102 bp):
GCTGCACTAATACAGGTGCTTTCATTAATAGGTCTTTCAATCGGTTGAAACTTTGTTGACATTCA
TCAGTCCACTCAAACTTTACATCTTTCTGCAATAATC
Found at i:17141255 original size:41 final size:41
Alignment explanation
Indices: 17141198--17141280 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
17141188 CAGTAAGGCA
* *
17141198 AGTTGTCGAATAAGACCATAGCCGAGCTGTGGCAATCGAAT
1 AGTTGTCGAATAAGACCAAAGCCGAGCTGTGGAAATCGAAT
* *
17141239 AGTTGTCGAATAAGACCAAAGTCGGGCTGTGGAAATCGAAT
1 AGTTGTCGAATAAGACCAAAGCCGAGCTGTGGAAATCGAAT
17141280 A
1 A
17141281 ATAAGGCCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.22
Consensus pattern (41 bp):
AGTTGTCGAATAAGACCAAAGCCGAGCTGTGGAAATCGAAT
Found at i:17142033 original size:24 final size:23
Alignment explanation
Indices: 17142006--17142050 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
17141996 TAAAGTAAGA
17142006 TAAATTGAT-TGGTATTTGAGTAGG
1 TAAA-TGATATGG-ATTTGAGTAGG
*
17142030 TAAATGGTATGGATTTGAGTA
1 TAAATGATATGGATTTGAGTA
17142051 ATGAAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.31, C:0.00, G:0.29, T:0.40
Consensus pattern (23 bp):
TAAATGATATGGATTTGAGTAGG
Found at i:17143779 original size:47 final size:45
Alignment explanation
Indices: 17143575--17143890 Score: 262
Period size: 49 Copynumber: 6.7 Consensus size: 45
17143565 ATATGTTGCT
* * *
17143575 GATGCCATGTCCC-GAACATGGTCTTACACTGGCTATCATCATCGAGGCT
1 GATG-CATGTCCCAG-ACAT-GTCTTACACTGGCTCTCATC-T-TAGGCC
* * * *
17143624 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTCTATACGTGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCT-TA-G-GCC
* * * *
17143674 AATGCATGTCCCAGACATGTCTTACACTAGCAC-AACTCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCA-TCTTAGGCC
*
17143718 GATGCATGTCCCAGACACGTCTTACACTGGCTCTCATCGTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATC-TT-AGGCC
* * *
17143765 GATGCATGTGCCAGACATGTCTTACACTGG-TGCTCATTCTCTACGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-CTCA-TCT-TAGGCC
* * * *
17143812 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATTGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTT-AGGCC
17143860 GATGCATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
17143891 ACACAAGTAA
Statistics
Matches: 224, Mismatches: 28, Indels: 33
0.79 0.10 0.12
Matches are distributed among these distances:
44 33 0.15
45 3 0.01
46 15 0.07
47 60 0.27
48 41 0.18
49 64 0.29
50 8 0.04
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTTAGGCC
Found at i:17143864 original size:95 final size:94
Alignment explanation
Indices: 17143624--17143889 Score: 301
Period size: 95 Copynumber: 2.8 Consensus size: 94
17143614 CATCGAGGCT
* * * * *
17143624 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCGTCTATACGT-GCTAATGCATGTCCCAG
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC--ATAT-TGTGGCTGATGCATGTCCCAG
17143688 ACATGTCTTACACT--AGCACAACTCTTAGCC
63 ACATGTCTTACACTGGAGCACAACTCTTAGCC
* * * * *
17143718 GATG-CATGTCCCAGACA-CGTCTTACACTGGCTCTCATCGTTGAGGCCGATGCATGTGCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATTGTGGCTGATGCATGTCCCAGAC
* * * *
17143781 ATGTCTTACACTGGTGCTC-ATTCTCTACGTC
65 ATGTCTTACACTGGAGCACAACTCT-TA-GCC
*
17143812 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATTGTGGCTGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTGTGGCTGATGCATGTCCCAGACA
17143877 TGTCTTACACTGG
66 TGTCTTACACTGG
17143890 CACACAAGTA
Statistics
Matches: 144, Mismatches: 20, Indels: 15
0.80 0.11 0.08
Matches are distributed among these distances:
90 2 0.01
91 29 0.20
92 19 0.13
93 18 0.12
94 10 0.07
95 48 0.33
96 18 0.12
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTGTGGCTGATGCATGTCCCAGACA
TGTCTTACACTGGAGCACAACTCTTAGCC
Found at i:17152903 original size:44 final size:44
Alignment explanation
Indices: 17152826--17153050 Score: 247
Period size: 44 Copynumber: 5.1 Consensus size: 44
17152816 AACGGGTTGT
* * *
17152826 TACAAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTGAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTGAAGC
* * * *
17152870 TACAAATCTTATCTCCTTGAAGTTGTAGAGGAGCAAATTAAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTGAAGC
* *
17152914 TACAAATCTTATCTCCCTAAAGTTGCA-ATGGAGCAGATTAAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGA-GGAGCAGATTGAAGC
* * * *
17152958 TACAAATCTCATCTCCTTGAAGCTGCA-ATGGAGCATATTGAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGA-GGAGCAGATTGAAGC
** * * * *
17153002 TATGAACCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC
1 TACAAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTGAAGC
17153046 TACAA
1 TACAA
17153051 TTTCTATACC
Statistics
Matches: 152, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
43 1 0.01
44 151 0.99
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.28
Consensus pattern (44 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGAGGAGCAGATTGAAGC
Found at i:17152934 original size:88 final size:88
Alignment explanation
Indices: 17152826--17153050 Score: 308
Period size: 88 Copynumber: 2.6 Consensus size: 88
17152816 AACGGGTTGT
* *
17152826 TACAAATCTTATCTCCCTAAAATTGCAGTGGAGCAGATTGAAGCTACAAATCTTATCTCCTTGAA
1 TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTCATCTCCTTGAA
* *
17152891 GTTGTAGA-GGAGCAAATTAAAGC
66 GCTGCA-ATGGAGCAAATTAAAGC
* *
17152914 TACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGATTAAAGCTACAAATCTCATCTCCTTGAA
1 TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTCATCTCCTTGAA
* *
17152979 GCTGCAATGGAGCATATTGAAGC
66 GCTGCAATGGAGCAAATTAAAGC
** * * * *
17153002 TATGAACCTCATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGCTACAA
1 TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAA
17153051 TTTCTATACC
Statistics
Matches: 120, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
87 1 0.01
88 119 0.99
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.28
Consensus pattern (88 bp):
TACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTACAAATCTCATCTCCTTGAA
GCTGCAATGGAGCAAATTAAAGC
Found at i:17154689 original size:4 final size:4
Alignment explanation
Indices: 17154680--17154710 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
17154670 TACGAACTCT
17154680 TTTA TTTA TTTA TTTA TTTA -TTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
17154711 GCCTTTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:17156051 original size:20 final size:20
Alignment explanation
Indices: 17156004--17156054 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
17155994 AGATAGGGGC
*
17156004 ACATGCCCATGTGGCCTGGG
1 ACATGCCCATGTGGCCTGGA
* *
17156024 ACACGCCCGTGTGGCCTGGA
1 ACATGCCCATGTGGCCTGGA
17156044 ACATGCCCATG
1 ACATGCCCATG
17156055 GGCAGATTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (20 bp):
ACATGCCCATGTGGCCTGGA
Found at i:17156712 original size:48 final size:48
Alignment explanation
Indices: 17156653--17156808 Score: 188
Period size: 48 Copynumber: 3.1 Consensus size: 48
17156643 TTCATCTCTC
*
17156653 AACCACGTATAATTATTCAATTCACATTTCAAATATAAACACTTCATA
1 AACCACATATAATTATTCAATTCACATTTCAAATATAAACACTTCATA
* *
17156701 AACCACATATAATTATTCAATTCACATTTCAAATATGAAC-CTTTGATTCATCTCTC
1 AACCACATATAATTATTCAATTCACATTTCAAATATAAACAC-----TTCA----TA
*
17156757 AACCACATATAATTATTCACTTCACATTTCAAATATAAACACTTCATA
1 AACCACATATAATTATTCAATTCACATTTCAAATATAAACACTTCATA
17156805 AACC
1 AACC
17156809 TTTGGTTCAT
Statistics
Matches: 92, Mismatches: 6, Indels: 20
0.78 0.05 0.17
Matches are distributed among these distances:
47 1 0.01
48 43 0.47
52 8 0.09
56 39 0.42
57 1 0.01
ACGTcount: A:0.41, C:0.23, G:0.02, T:0.34
Consensus pattern (48 bp):
AACCACATATAATTATTCAATTCACATTTCAAATATAAACACTTCATA
Found at i:17158050 original size:19 final size:18
Alignment explanation
Indices: 17158017--17158064 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
17158007 ATTTTCCCTT
* *
17158017 TTTCTTTTTCTTTTCTTC-
1 TTTCTTTCTCTTTTC-ACG
17158035 TTTCTTTCTCTCTTTCACG
1 TTTCTTTCTCT-TTTCACG
17158054 TTTCTTTCTCT
1 TTTCTTTCTCT
17158065 GTAACTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 11 0.42
19 15 0.58
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69
Consensus pattern (18 bp):
TTTCTTTCTCTTTTCACG
Found at i:17158268 original size:3 final size:3
Alignment explanation
Indices: 17158260--17158297 Score: 67
Period size: 3 Copynumber: 12.3 Consensus size: 3
17158250 TTGATAAAAT
17158260 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATTA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA A
17158298 ATAAATAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:17158339 original size:4 final size:4
Alignment explanation
Indices: 17158293--17158320 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
17158283 AATAATAATT
17158293 AATA AATA AATA AATA AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA
17158321 TCTTTAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AATA
Found at i:17159473 original size:19 final size:19
Alignment explanation
Indices: 17159451--17159493 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
17159441 GATTTTTTTA
*
17159451 TTTTTTTTAACTTTTGTCT
1 TTTTTTTTAAATTTTGTCT
* *
17159470 TTTTCTTTAAATTTTTTCT
1 TTTTTTTTAAATTTTGTCT
17159489 TTTTT
1 TTTTT
17159494 AAGTTTTATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.12, C:0.09, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTTTTTAAATTTTGTCT
Found at i:17159531 original size:13 final size:13
Alignment explanation
Indices: 17159515--17159557 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
17159505 TTTTTCTTAT
*
17159515 TTTATTTTGTTTA
1 TTTATTTTATTTA
17159528 TTTATTTTATTTA
1 TTTATTTTATTTA
* *
17159541 TTTTTTGTTATTAA
1 TTTATT-TTATTTA
17159555 TTT
1 TTT
17159558 TAAAAAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 17 0.65
14 9 0.35
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.77
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:17159552 original size:10 final size:9
Alignment explanation
Indices: 17159511--17159544 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
17159501 ATATTTTTTC
17159511 TTATTTTAT
1 TTATTTTAT
17159520 TT-TGTTTAT
1 TTAT-TTTAT
17159529 TTATTTTAT
1 TTATTTTAT
17159538 TTATTTT
1 TTATTTT
17159545 TTGTTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.04
9 21 0.91
10 1 0.04
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (9 bp):
TTATTTTAT
Found at i:17159619 original size:23 final size:23
Alignment explanation
Indices: 17159561--17159627 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 23
17159551 TTAATTTTAA
* *
17159561 AAAATTTGAAATGTATA--TTTG
1 AAAATTTTAAATATATATTTTTG
*
17159582 AAATATTTTATAATATATATTTTTT
1 AAA-ATTTTA-AATATATATTTTTG
17159607 AAAATTTTAAATAT-TATTTTT
1 AAAATTTTAAATATATATTTTT
17159628 AAATTATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
21 3 0.08
22 12 0.31
23 12 0.31
24 6 0.15
25 6 0.15
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (23 bp):
AAAATTTTAAATATATATTTTTG
Found at i:17159620 original size:33 final size:32
Alignment explanation
Indices: 17159577--17159730 Score: 139
Period size: 36 Copynumber: 4.5 Consensus size: 32
17159567 TGAAATGTAT
*
17159577 ATTTGAAATAT-TTTATAATATATATTTTTTAAA
1 ATTTTAAATATATTTATAA-AT-TATTTTTTAAA
*
17159610 ATTTTAAATATTATTTTTAAATTATTTTTTAAA
1 ATTTTAAATA-TATTTATAAATTATTTTTTAAA
* *
17159643 ATTTTAAATATATATTTTTGAAATTATTTCTTATAA
1 ATTTT-AA-ATATATTTAT-AAATTATTTTTTA-AA
* *
17159679 ATTTTAAAAATATATTTTTGAAATTAATTTTTATAA
1 ATTTT--AAATATATTTAT-AAATTATTTTTTA-AA
17159715 ATTTTAAATAATATTT
1 ATTTTAAAT-ATATTT
17159731 TTTAAATATT
Statistics
Matches: 108, Mismatches: 5, Indels: 14
0.85 0.04 0.11
Matches are distributed among these distances:
33 25 0.23
34 16 0.15
35 27 0.25
36 37 0.34
37 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.56
Consensus pattern (32 bp):
ATTTTAAATATATTTATAAATTATTTTTTAAA
Found at i:17159629 original size:13 final size:12
Alignment explanation
Indices: 17159611--17159717 Score: 64
Period size: 13 Copynumber: 8.8 Consensus size: 12
17159601 TTTTTTAAAA
17159611 TTTTAAATATTAT
1 TTTTAAA-ATTAT
17159624 TTTT-AAATTAT
1 TTTTAAAATTAT
*
17159635 TTTTTAAA--A-
1 TTTTAAAATTAT
17159644 TTTTAAATATATAT
1 TTTTAAA-AT-TAT
*
17159658 TTTTGAAATTAT
1 TTTTAAAATTAT
*
17159670 TTCTTATAA--AT
1 TT-TTAAAATTAT
*
17159681 TTTAAAAATATAT
1 TTTTAAAAT-TAT
*
17159694 TTTTGAAATTAAT
1 TTTTAAAATT-AT
17159707 TTTTATAAATT
1 TTTTA-AAATT
17159718 TTAAATAATA
Statistics
Matches: 73, Mismatches: 9, Indels: 23
0.70 0.09 0.22
Matches are distributed among these distances:
9 6 0.08
10 6 0.08
11 13 0.18
12 11 0.15
13 26 0.36
14 11 0.15
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (12 bp):
TTTTAAAATTAT
Found at i:17159636 original size:23 final size:25
Alignment explanation
Indices: 17159582--17159637 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 25
17159572 TGTATATTTG
17159582 AAATATTTTATAATATATATTTTTT
1 AAATATTTTATAATATATATTTTTT
17159607 AAA-ATTTTA-AATAT-TA-TTTTT
1 AAATATTTTATAATATATATTTTTT
17159628 AAATTATTTT
1 AAA-TATTTT
17159638 TTAAAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
21 8 0.28
22 2 0.07
23 10 0.34
24 6 0.21
25 3 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (25 bp):
AAATATTTTATAATATATATTTTTT
Found at i:17159658 original size:23 final size:23
Alignment explanation
Indices: 17159632--17159766 Score: 61
Period size: 22 Copynumber: 5.8 Consensus size: 23
17159622 ATTTTTAAAT
17159632 TATTTTTTAAAATTTTAAATATA
1 TATTTTTTAAAATTTTAAATATA
* ***
17159655 TA-TTTTTGAAATTATTTCTTATA
1 TATTTTTTAAAATT-TTAAATATA
* **
17159678 AATTTTAAAAATATATTTTTGAAAT-TA
1 TATTTT-TTAA-A-A-TTTT-AAATATA
17159705 -A-TTTTTATAAATTTTAAATA-A
1 TATTTTTTA-AAATTTTAAATATA
*
17159726 TATTTTTT-AAATATT-AA-ATA
1 TATTTTTTAAAATTTTAAATATA
17159746 TATTTTTTAATAATATTTAAA
1 TATTTTTTAA-AAT-TTTAAA
17159767 AATTAAAATT
Statistics
Matches: 81, Mismatches: 15, Indels: 31
0.64 0.12 0.24
Matches are distributed among these distances:
19 1 0.01
20 11 0.14
21 12 0.15
22 18 0.22
23 17 0.21
24 7 0.09
25 5 0.06
26 2 0.02
27 5 0.06
28 3 0.04
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (23 bp):
TATTTTTTAAAATTTTAAATATA
Found at i:17159666 original size:22 final size:20
Alignment explanation
Indices: 17159624--17159667 Score: 61
Period size: 22 Copynumber: 2.1 Consensus size: 20
17159614 TAAATATTAT
17159624 TTTTAAATTATTTTTTAAAA
1 TTTTAAATTATTTTTTAAAA
*
17159644 TTTTAAATATATATTTTTGAAA
1 TTTTAAAT-TAT-TTTTTAAAA
17159666 TT
1 TT
17159668 ATTTCTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.38
21 3 0.14
22 10 0.48
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (20 bp):
TTTTAAATTATTTTTTAAAA
Found at i:17159686 original size:36 final size:35
Alignment explanation
Indices: 17159599--17159737 Score: 203
Period size: 36 Copynumber: 4.0 Consensus size: 35
17159589 TTATAATATA
17159599 TATTTTTTAAAATTTTAAATAT-TATTTTT-AAAT
1 TATTTTTTAAAATTTTAAATATATATTTTTGAAAT
17159632 TATTTTTTAAAATTTTAAATATATATTTTTGAAAT
1 TATTTTTTAAAATTTTAAATATATATTTTTGAAAT
* *
17159667 TATTTCTTATAAATTTTAAAAATATATTTTTGAAAT
1 TATTTTTTA-AAATTTTAAATATATATTTTTGAAAT
* *
17159703 TAATTTTTATAAATTTTAAATA-ATATTTTTTAAAT
1 TATTTTTTA-AAATTTTAAATATATATTTTTGAAAT
17159738 ATTAAATATA
Statistics
Matches: 97, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
33 22 0.23
34 7 0.07
35 24 0.25
36 44 0.45
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (35 bp):
TATTTTTTAAAATTTTAAATATATATTTTTGAAAT
Found at i:17159710 original size:71 final size:68
Alignment explanation
Indices: 17159599--17159737 Score: 199
Period size: 71 Copynumber: 2.0 Consensus size: 68
17159589 TTATAATATA
* * *
17159599 TATTTTTTAAAATTTTAAATATTATTTTTAAATTATTTTTTA-AAATTTTAAATATATATTTTTG
1 TATTTCTTAAAATTTTAAAAATTATTTTTAAATTAATTTTTATAAATTTTAAATA-ATATTTTTG
17159663 AAAT
65 AAAT
17159667 TATTTCTTATAAATTTTAAAAATATATTTTTGAAATTAATTTTTATAAATTTTAAATAATATTTT
1 TATTTCTTA-AAATTTTAAAAAT-TATTTTT-AAATTAATTTTTATAAATTTTAAATAATATTTT
*
17159732 TTAAAT
63 TGAAAT
17159738 ATTAAATATA
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
68 8 0.13
69 12 0.19
70 7 0.11
71 24 0.38
72 12 0.19
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (68 bp):
TATTTCTTAAAATTTTAAAAATTATTTTTAAATTAATTTTTATAAATTTTAAATAATATTTTTGA
AAT
Found at i:17159719 original size:22 final size:21
Alignment explanation
Indices: 17159694--17159772 Score: 61
Period size: 21 Copynumber: 3.5 Consensus size: 21
17159684 AAAAATATAT
17159694 TTTTGAAATTAATTTTTATAAA
1 TTTT-AAATTAATTTTTATAAA
*
17159716 TTTTAAA-TAATATTTTTTAAA
1 TTTTAAATTAAT-TTTTATAAA
* *
17159737 TATTAAATATATTTTTTAATAATA
1 TTTTAAAT-TAATTTTT-ATAA-A
*
17159761 TTTAAAAATTAA
1 TTT-TAAATTAA
17159773 AATTTTTAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
20 4 0.09
21 17 0.39
22 8 0.18
23 6 0.14
24 5 0.11
25 4 0.09
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (21 bp):
TTTTAAATTAATTTTTATAAA
Found at i:17159750 original size:20 final size:21
Alignment explanation
Indices: 17159705--17159755 Score: 77
Period size: 20 Copynumber: 2.4 Consensus size: 21
17159695 TTTGAAATTA
*
17159705 ATTTTTATAAATTTTAAATAAT
1 ATTTTT-TAAATATTAAATAAT
17159727 ATTTTTTAAATATTAAAT-AT
1 ATTTTTTAAATATTAAATAAT
17159747 ATTTTTTAA
1 ATTTTTTAA
17159756 TAATATTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 11 0.39
21 11 0.39
22 6 0.21
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTTTTAAATATTAAATAAT
Found at i:17159799 original size:12 final size:13
Alignment explanation
Indices: 17159747--17159805 Score: 55
Period size: 14 Copynumber: 4.4 Consensus size: 13
17159737 TATTAAATAT
* *
17159747 ATTTTTTAATAAT
1 ATTTTTAAATAAA
**
17159760 ATTTAAAAATTAAA
1 ATTTTTAAA-TAAA
17159774 ATTTTTAAATAAA
1 ATTTTTAAATAAA
*
17159787 ATTTTTATAAAAAA
1 ATTTTTA-AATAAA
17159801 ATTTT
1 ATTTT
17159806 ACATATAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
13 17 0.46
14 20 0.54
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
ATTTTTAAATAAA
Found at i:17159806 original size:13 final size:14
Alignment explanation
Indices: 17159770--17159806 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
17159760 ATTTAAAAAT
17159770 TAAAATTTT-TAAA
1 TAAAATTTTATAAA
17159783 TAAAATTTTTATAAA
1 TAAAA-TTTTATAAA
17159798 -AAAATTTTA
1 TAAAATTTTA
17159807 CATATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.45
14 8 0.36
15 4 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TAAAATTTTATAAA
Found at i:17159860 original size:17 final size:16
Alignment explanation
Indices: 17159841--17159924 Score: 55
Period size: 18 Copynumber: 4.8 Consensus size: 16
17159831 TTTTAAAATT
17159841 AAAAATAAAAAATAAA
1 AAAAATAAAAAATAAA
17159857 TAAACAA-AATAAAATAAGA
1 -AAA-AATAA-AAAATAA-A
*
17159876 AAAAATATAAAACTTAAA
1 AAAAATA-AAAA-ATAAA
17159894 AAAAGA-AAAAAATTAAA
1 AAAA-ATAAAAAA-TAAA
17159911 GAAAAAGTAAAAAA
1 -AAAAA-TAAAAAA
17159925 AACAAATTTA
Statistics
Matches: 54, Mismatches: 2, Indels: 20
0.71 0.03 0.26
Matches are distributed among these distances:
17 16 0.30
18 26 0.48
19 12 0.22
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (16 bp):
AAAAATAAAAAATAAA
Found at i:17159922 original size:26 final size:26
Alignment explanation
Indices: 17159892--17159942 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
17159882 ATAAAACTTA
* *
17159892 AAAAAAGAAAAAAATTAAAGAAAAAGT
1 AAAAAA-AACAAAATTAAAAAAAAAGT
*
17159919 AAAAAAAACAAATTTAAAAAAAAA
1 AAAAAAAACAAAATTAAAAAAAAA
17159943 ACCAAAAGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.80, C:0.02, G:0.06, T:0.12
Consensus pattern (26 bp):
AAAAAAAACAAAATTAAAAAAAAAGT
Found at i:17166539 original size:14 final size:14
Alignment explanation
Indices: 17166522--17166551 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
17166512 CCTTCTGGTT
17166522 CCTTTCTTGCTTTC
1 CCTTTCTTGCTTTC
17166536 CCTTTCTTGCTTTC
1 CCTTTCTTGCTTTC
17166550 CC
1 CC
17166552 CCTGCTCCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.40, G:0.07, T:0.53
Consensus pattern (14 bp):
CCTTTCTTGCTTTC
Found at i:17172724 original size:28 final size:27
Alignment explanation
Indices: 17172666--17172731 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
17172656 GGGAATGAAC
*
17172666 TATATACAT-AATAGATTTAAAAAAAA
1 TATATATATAAATAGATTTAAAAAAAA
* * *
17172692 CATATATATAAATAGATTTAGAATAAAT
1 TATATATATAAATAGATTTA-AAAAAAA
*
17172720 TATATGTATAAA
1 TATATATATAAA
17172732 ATAACATGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
26 7 0.22
27 10 0.31
28 15 0.47
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (27 bp):
TATATATATAAATAGATTTAAAAAAAA
Found at i:17174527 original size:90 final size:89
Alignment explanation
Indices: 17174433--17174609 Score: 196
Period size: 90 Copynumber: 2.0 Consensus size: 89
17174423 GAGATAAGGA
* * * * * *
17174433 TGGTGGCTTCAATCTGC-TCCACTGCAACTTCAGGGAGATGAGATCTGCTATCTTC-AGTCTACT
1 TGGTGACTTAAATCTGCTTCC-CTGCAACCTCAGGAAGATAAGATCTGCCATCTTCGA-TCTACT
17174496 CCACTACAACTTCAGGGAGATAAGACT
64 CCACTACAACTT-AGGGAGATAAGACT
* * * * * *
17174523 TGGTGACTTAAATCTGCTTCCTTGCTACCTCAGGAAGATAATATTTGCCATCTTCGATCTGCTCT
1 TGGTGACTTAAATCTGCTTCCCTGCAACCTCAGGAAGATAAGATCTGCCATCTTCGATCTACTCC
*
17174588 ACTACTACTTAGGGAGATAAGA
66 ACTACAACTTAGGGAGATAAGA
17174610 TCTACAATCT
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
89 12 0.17
90 56 0.78
91 4 0.06
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (89 bp):
TGGTGACTTAAATCTGCTTCCCTGCAACCTCAGGAAGATAAGATCTGCCATCTTCGATCTACTCC
ACTACAACTTAGGGAGATAAGACT
Found at i:17174709 original size:132 final size:135
Alignment explanation
Indices: 17174439--17174720 Score: 311
Period size: 132 Copynumber: 2.1 Consensus size: 135
17174429 AGGATGGTGG
* * * * * *
17174439 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATGAGATCTGCTATCTTCAGTCTACTCCACTACA
1 CTTCAATCTGCTCTACTACAACTTCAGGGAGATAAGATCTACAATCTTCAGCCTACTCCACTACA
* * * * * *
17174504 ACTTCAGGGAGATAAGACTTGGTGACTTAAATCTGCTTCCTTGCTACCTCAGGAAGATAATATTT
66 ACTTCAGGGAGACAAGACTAGGTGACTTAAATCTACTCCCTTGCTACCTCAGGAAGATAAGATTC
17174569 GCCAT
131 GCCAT
* * * * *
17174574 CTTCGATCTGCTCTACTACTACTT-AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTCCT
1 CTTCAATCTGCTCTACTACAACTTCAGGGAGATAAGATCTACAATCTTCAGCCTACTCCACTACA
* * * *
17174638 GCTT-AGGGAGACAAGGCTAGCG-G-CTTGAATCTACTCCCTTGCTACCTCAGGGAGATAAGATT
66 ACTTCAGGGAGACAAGACTAG-GTGACTTAAATCTACTCCCTTGCTACCTCAGGAAGATAAGATT
* *
17174700 CGTCGT
130 CGCCAT
*
17174706 CTTCAAACTGCTCTA
1 CTTCAATCTGCTCTA
17174721 TTGCTACCTC
Statistics
Matches: 121, Mismatches: 25, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
132 50 0.41
133 14 0.12
134 37 0.31
135 20 0.17
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (135 bp):
CTTCAATCTGCTCTACTACAACTTCAGGGAGATAAGATCTACAATCTTCAGCCTACTCCACTACA
ACTTCAGGGAGACAAGACTAGGTGACTTAAATCTACTCCCTTGCTACCTCAGGAAGATAAGATTC
GCCAT
Found at i:17188100 original size:710 final size:696
Alignment explanation
Indices: 17186735--17188139 Score: 2396
Period size: 710 Copynumber: 2.0 Consensus size: 696
17186725 ATTTAAGATG
*
17186735 AGGAAGGGTTAATTGCAAAACCAAGGCCAGAAACGGTGGTAAGCAAAGGTAAGAATGAGGTAGGC
1 AGGAAGGGTTAATTCCAAAACCAAGGCCAGAAACGGTGGTAAGCAAAGGTAAGAATGAGGTAGGC
* * * * *
17186800 CAAAATGACCCAAAGCCGGTGAGTACAGAATATAAACCTCGTGTGCTATACCCCAATGTGACAAG
66 CAAAATGACCCAAAGCCGGTGAGTACAAAATATAAACCTCATATGCCATACCCCAATGCGACAAG
* * *
17186865 GAAAGACCGATCAGACGAACAATTTGGTAAATTTCTTAAAATTTTAAAGAAACTATATATTAACT
131 GAAAGACCGATCAGACGAAAAATTTGGTAAATTCCTTAAAATTTTAAAGAAACTACATATTAACT
* ** *
17186930 TACTGTTTATTGAAGTTCTTTCGCAGATGCCAAACACAGTTAAGTTTTAAAGGAGCTTTTAACAA
196 TACCGTTTATTGAAGCCCTTTCGCAGATGCCAAACACAGTCAAGTTTTAAAGGAGCTTTTAACAA
* * * *
17186995 ATAAACGAAAGTTGAATGAGGCGTCGCATGTGGAGTTTAATGCAGTTTCCTTAGCCATATTATAG
261 ATAAACGAAAGCTGAATGAGGCGTCGCATCTGGAGTTGAATGCAGTTTCCTCAGCCATATTATAG
* *
17187060 CCAACAAATTAAAAGATCCAGAGAGTTTTACGTTCCTTGTTTAATTGGTAGTTTAGATTTTCATA
326 CCAACAAATTAAAAGATCCAGAGAGTTTTACGTTCCTTGTTTAATTGGTAGTTTAGATGTCCATA
*
17187125 ATGCATTGGCTGACTTAGGGGCAAGTATTAATGTTATGCCTTATAAAATGTTTAAACAGCTAGGT
391 ATGCATTGGCTGACTTAGGGGCAAGCATTAATGTTATGCCTTATAAAATGTTTAAACAGCTAGGT
17187190 CTTGGGAAACCCAAACAAACAAGGATGAGCATTCAATTGGCTGATAAAACCATTAGATTTCCTAG
456 CTTGGGAAACCCAAACAAACAAGGATGAGCATTCAATTGGCTGATAAAACCATTAGATTTCCTAG
17187255 GGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTATATACCCAGTAAACTTTGTTGTTC
521 GGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTATATACCCAGTAAACTTTGTTGTTC
17187320 TAGACATAGAAGAGCATAATAATGCACCTTTAATTCTAGGACGACCCTTTTTAGTGACTGCTAGA
586 TAGACATAGAAGAGCATAATAATGCACCTTTAATTCTAGGACGACCCTTTTTAGTGACTGCTAGA
17187385 ACCATTATTGATATTGGTACAGGTGAACTCACACTTCGTGTGGGAA
651 ACCATTATTGATATTGGTACAGGTGAACTCACACTTCGTGTGGGAA
*
17187431 AGGAAGGGTTAGTTCCAAACAACCAAGGCCAGAAACGGTGGTAAGCAAAGGTAAGAATGAGGTAG
1 AGGAAGGGTTAATTCC-AA-AACCAAGGCCAGAAACGGTGGTAAGCAAAGGTAAGAATGAGGTAG
*
17187496 GCCAAAATGACCCAAAGTCGGTGAGTACAAAATATAAACCTCATATGCCATACCCCAATGCGACA
64 GCCAAAATGACCCAAAGCCGGTGAGTACAAAATATAAACCTCATATGCCATACCCCAATGCGACA
* *
17187561 AGGAAAGACCGATTAGACGAAAAATTTGGTAAATTCCTTAAACTTTTAAAGAAACTACATATTAA
129 AGGAAAGACCGATCAGACGAAAAATTTGGTAAATTCCTTAAAATTTTAAAGAAACTACATATTAA
*
17187626 CTTACCGTTTATTGAAGCCCTTTCGCAGATGCCAAACGCAGTCAAGTTTTTAAAGGAGCTTTTAA
194 CTTACCGTTTATTGAAGCCCTTTCGCAGATGCCAAACACAGTCAAG-TTTTAAAGGAGCTTTTAA
* * *
17187691 CAAATAAATGAAAGCTGGATGAGGCGTCGCATCTGGAGTTGAATGCAGTTTGCTCAGCCATATTA
258 CAAATAAACGAAAGCTGAATGAGGCGTCGCATCTGGAGTTGAATGCAGTTTCCTCAGCCATA-T-
* * * *
17187756 TAGAATAAGCTACCCAACAAATTGAAGGATCTAGGGAGTTTTACGATTCCTTGTTTAATTGGTAG
321 T---AT-AG----CCAACAAATTAAAAGATCCAGAGAGTTTTACG-TTCCTTGTTTAATTGGTAG
17187821 TTTAGATGTCCATAATGCATTGGCTGACTTAGGGGCAAGCATTAATGTTATGCCTTATAAAATGT
377 TTTAGATGTCCATAATGCATTGGCTGACTTAGGGGCAAGCATTAATGTTATGCCTTATAAAATGT
17187886 TTAAACAGCTAGGTCTTGGGAAACCCAAACAAACAAGGATGAGCATTCAATTGGCTGATAAAACC
442 TTAAACAGCTAGGTCTTGGGAAACCCAAACAAACAAGGATGAGCATTCAATTGGCTGATAAAACC
17187951 ATTAGATTTCCTAGGGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTATATACCCAGT
507 ATTAGATTTCCTAGGGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTATATACCCAGT
17188016 AAACTTTGTTGTTCTAGACATAGAAGAGCATAATAATGCACCTTTAATTCTAGGACGACCCTTTT
572 AAACTTTGTTGTTCTAGACATAGAAGAGCATAATAATGCACCTTTAATTCTAGGACGACCCTTTT
17188081 TAGTGACTGCTAGAACCATTATTGATATTGGTACAGGTGAACTCACACTTCGTGTGGGA
637 TAGTGACTGCTAGAACCATTATTGATATTGGTACAGGTGAACTCACACTTCGTGTGGGA
17188140 GACGAAACAA
Statistics
Matches: 663, Mismatches: 32, Indels: 14
0.94 0.05 0.02
Matches are distributed among these distances:
696 14 0.02
697 2 0.00
698 205 0.31
699 73 0.11
700 1 0.00
701 1 0.00
704 2 0.00
705 2 0.00
709 28 0.04
710 335 0.51
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (696 bp):
AGGAAGGGTTAATTCCAAAACCAAGGCCAGAAACGGTGGTAAGCAAAGGTAAGAATGAGGTAGGC
CAAAATGACCCAAAGCCGGTGAGTACAAAATATAAACCTCATATGCCATACCCCAATGCGACAAG
GAAAGACCGATCAGACGAAAAATTTGGTAAATTCCTTAAAATTTTAAAGAAACTACATATTAACT
TACCGTTTATTGAAGCCCTTTCGCAGATGCCAAACACAGTCAAGTTTTAAAGGAGCTTTTAACAA
ATAAACGAAAGCTGAATGAGGCGTCGCATCTGGAGTTGAATGCAGTTTCCTCAGCCATATTATAG
CCAACAAATTAAAAGATCCAGAGAGTTTTACGTTCCTTGTTTAATTGGTAGTTTAGATGTCCATA
ATGCATTGGCTGACTTAGGGGCAAGCATTAATGTTATGCCTTATAAAATGTTTAAACAGCTAGGT
CTTGGGAAACCCAAACAAACAAGGATGAGCATTCAATTGGCTGATAAAACCATTAGATTTCCTAG
GGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTATATACCCAGTAAACTTTGTTGTTC
TAGACATAGAAGAGCATAATAATGCACCTTTAATTCTAGGACGACCCTTTTTAGTGACTGCTAGA
ACCATTATTGATATTGGTACAGGTGAACTCACACTTCGTGTGGGAA
Found at i:17191014 original size:38 final size:36
Alignment explanation
Indices: 17190971--17191102 Score: 140
Period size: 39 Copynumber: 3.5 Consensus size: 36
17190961 ATAAAGTATG
17190971 GTTTTAATTAATAATAAATAAAATAGTATGAGGAAGTA
1 GTTTTAATTAATAATAAA-AAAATAGTAT-AGGAAGTA
* *
17191009 GTTTTAATTAACAATAAAACAAGATAGTATAGGGAAATA
1 GTTTTAATTAATAATAAAA-AA-ATAGTATA-GGAAGTA
* * * *
17191048 GTTTTAATTAAATAA-AACAAAATAGCATAGGGAGTG
1 GTTTTAATT-AATAATAAAAAAATAGTATAGGAAGTA
*
17191084 GTTTTGATTAATAATAAAA
1 GTTTTAATTAATAATAAAA
17191103 CAAAGTAGCA
Statistics
Matches: 79, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
35 5 0.06
36 15 0.19
37 8 0.10
38 22 0.28
39 25 0.32
40 4 0.05
ACGTcount: A:0.49, C:0.03, G:0.16, T:0.32
Consensus pattern (36 bp):
GTTTTAATTAATAATAAAAAAATAGTATAGGAAGTA
Found at i:17191105 original size:38 final size:38
Alignment explanation
Indices: 17190971--17191113 Score: 157
Period size: 38 Copynumber: 3.8 Consensus size: 38
17190961 ATAAAGTATG
* * *
17190971 GTTTTAATTAATAAT-AAATAAAATAGTATGAGGAAGTA
1 GTTTTAATTAATAATAAAACAAAATAGCAT-AGGGAGTA
* * * *
17191009 GTTTTAATTAACAATAAAACAAGATAGTATAGGGAAATA
1 GTTTTAATTAATAATAAAACAAAATAGCATAGGG-AGTA
*
17191048 GTTTTAATT-A-AATAAAACAAAATAGCATAGGGAGTG
1 GTTTTAATTAATAATAAAACAAAATAGCATAGGGAGTA
* *
17191084 GTTTTGATTAATAATAAAACAAAGTAGCAT
1 GTTTTAATTAATAATAAAACAAAATAGCAT
17191114 GGGGGGAGTG
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
36 10 0.11
37 21 0.23
38 35 0.39
39 24 0.27
ACGTcount: A:0.49, C:0.04, G:0.16, T:0.31
Consensus pattern (38 bp):
GTTTTAATTAATAATAAAACAAAATAGCATAGGGAGTA
Found at i:17192787 original size:21 final size:19
Alignment explanation
Indices: 17192749--17192787 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
17192739 ACTCCCGTTT
*
17192749 TCATTTTTAAAATCGATTC
1 TCATTTTCAAAATCGATTC
17192768 TCATTTTCCAAAACTCGATT
1 TCATTTT-CAAAA-TCGATT
17192788 TGAAAATGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 4 0.24
21 6 0.35
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.44
Consensus pattern (19 bp):
TCATTTTCAAAATCGATTC
Found at i:17199136 original size:20 final size:22
Alignment explanation
Indices: 17199111--17199154 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
17199101 CATTATAACA
*
17199111 ACTTTAC-TAGAAGAAA-AATT
1 ACTTTACATAGAACAAATAATT
17199131 ACTTTACATAGAACAAATAATT
1 ACTTTACATAGAACAAATAATT
17199153 AC
1 AC
17199155 ATATACAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 8 0.38
22 6 0.29
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.30
Consensus pattern (22 bp):
ACTTTACATAGAACAAATAATT
Found at i:17202450 original size:28 final size:27
Alignment explanation
Indices: 17202392--17202457 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
17202382 GGGAATGAAC
*
17202392 TATATACAT-AATAGATTTAAAAAAAA
1 TATATATATAAATAGATTTAAAAAAAA
* * *
17202418 CATATATATAAATAGATTTAGAATAAAT
1 TATATATATAAATAGATTTA-AAAAAAA
*
17202446 TATATGTATAAA
1 TATATATATAAA
17202458 ATAACATGGA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
26 7 0.22
27 10 0.31
28 15 0.47
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (27 bp):
TATATATATAAATAGATTTAAAAAAAA
Found at i:17218618 original size:34 final size:34
Alignment explanation
Indices: 17218580--17218649 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
17218570 CAAAGAGGAG
* *
17218580 TCAATGGCATTTTCGCAAGGTAATACCTCACCTC
1 TCAATGGCATATTCGCAAGGTAAGACCTCACCTC
17218614 TCAATGGCATATTCGCAAGGTAAGACCTCACCTC
1 TCAATGGCATATTCGCAAGGTAAGACCTCACCTC
17218648 TC
1 TC
17218650 TCTTCTCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (34 bp):
TCAATGGCATATTCGCAAGGTAAGACCTCACCTC
Done.