Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 72 of 153
Found at i:22871838 original size:18 final size:20
Alignment explanation
Indices: 22871812--22871861 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 20
22871802 TTCCTTTCAG
*
22871812 TTTAGTTTTCAGTT-TTA-GT
1 TTTA-TTTTCAGTTCTTACGA
22871831 TTTATTTT--GTTCTTACGA
1 TTTATTTTCAGTTCTTACGA
22871849 TTTATTTTCAGTT
1 TTTATTTTCAGTT
22871862 GATTTTTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
16 3 0.12
17 3 0.12
18 13 0.50
19 4 0.15
20 3 0.12
ACGTcount: A:0.16, C:0.08, G:0.12, T:0.64
Consensus pattern (20 bp):
TTTATTTTCAGTTCTTACGA
Found at i:22878587 original size:13 final size:13
Alignment explanation
Indices: 22878571--22878662 Score: 85
Period size: 13 Copynumber: 7.0 Consensus size: 13
22878561 CTATACAAAA
22878571 TGGTTATATGAAT
1 TGGTTATATGAAT
*
22878584 TGGTTATACGAAT
1 TGGTTATATGAAT
* *
22878597 TGGTTATGTGAAA
1 TGGTTATATGAAT
* *
22878610 TGATTATAAGAAT
1 TGGTTATATGAAT
*
22878623 TGGTTATATAGAAA
1 TGGTTATAT-GAAT
* * * *
22878637 TAGATATACGAAA
1 TGGTTATATGAAT
22878650 TGGTTATATGAAT
1 TGGTTATATGAAT
22878663 CAGTTATACG
Statistics
Matches: 60, Mismatches: 18, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
13 51 0.85
14 9 0.15
ACGTcount: A:0.38, C:0.02, G:0.22, T:0.38
Consensus pattern (13 bp):
TGGTTATATGAAT
Found at i:22878591 original size:26 final size:26
Alignment explanation
Indices: 22878553--22878661 Score: 103
Period size: 26 Copynumber: 4.2 Consensus size: 26
22878543 GTTAACACTT
*
22878553 TGAAATGGCTATACAAAATGGTTATA
1 TGAAATGGTTATACAAAATGGTTATA
* * * *
22878579 TGAATTGGTTATACGAATTGGTTATG
1 TGAAATGGTTATACAAAATGGTTATA
* *
22878605 TGAAATGATTATA-AGAATTGGTTATA
1 TGAAATGGTTATACA-AAATGGTTATA
* * *
22878631 TAGAAATAGATATACGAAATGGTTATA
1 T-GAAATGGTTATACAAAATGGTTATA
22878658 TGAA
1 TGAA
22878662 TCAGTTATAC
Statistics
Matches: 66, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
26 46 0.70
27 20 0.30
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.35
Consensus pattern (26 bp):
TGAAATGGTTATACAAAATGGTTATA
Found at i:22878670 original size:53 final size:52
Alignment explanation
Indices: 22878571--22878670 Score: 121
Period size: 53 Copynumber: 1.9 Consensus size: 52
22878561 CTATACAAAA
* * * * * *
22878571 TGGTTATATGAATTGGTTATACGAATTGGTTATGTGAAATGATTATAAGAAT
1 TGGTTATATGAAATAGATATACGAAATGGTTATATGAAATCATTATAAGAAT
22878623 TGGTTATATAGAAATAGATATACGAAATGGTTATATG-AATCAGTTATA
1 TGGTTATAT-GAAATAGATATACGAAATGGTTATATGAAATCA-TTATA
22878671 CGGAAACATA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
52 13 0.32
53 27 0.68
ACGTcount: A:0.38, C:0.03, G:0.21, T:0.38
Consensus pattern (52 bp):
TGGTTATATGAAATAGATATACGAAATGGTTATATGAAATCATTATAAGAAT
Found at i:22878737 original size:12 final size:13
Alignment explanation
Indices: 22878720--22878753 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
22878710 ATGAAAATAA
*
22878720 TTATATGAAGTG-
1 TTATATGAAATGT
22878732 TTATATGAAATGT
1 TTATATGAAATGT
22878745 TTATATGAA
1 TTATATGAA
22878754 TAGGTATGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (13 bp):
TTATATGAAATGT
Found at i:22895424 original size:10 final size:10
Alignment explanation
Indices: 22895391--22895425 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
22895381 GAAAGTAAGA
*
22895391 AAATAATGGG
1 AAATAAGGGG
*
22895401 AAAAAAGGGG
1 AAATAAGGGG
22895411 AAATAAGGGG
1 AAATAAGGGG
22895421 AAATA
1 AAATA
22895426 GGATTACCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.31, T:0.11
Consensus pattern (10 bp):
AAATAAGGGG
Found at i:22897345 original size:28 final size:28
Alignment explanation
Indices: 22897282--22897374 Score: 96
Period size: 28 Copynumber: 3.3 Consensus size: 28
22897272 GATGAAAACG
* * * * *
22897282 TATAGAAATGGATGCCTTTGTGGTAATA
1 TATAAAAATGGACGCCTTTATGGAAATC
* *
22897310 TATGAAAATGGACGCCTTTATAGAAATC
1 TATAAAAATGGACGCCTTTATGGAAATC
* *
22897338 TATAAAAATAGACGCTTTTATGGAAATC
1 TATAAAAATGGACGCCTTTATGGAAATC
*
22897366 TATGAAAAT
1 TATAAAAAT
22897375 AAAAGCCTTT
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.32
Consensus pattern (28 bp):
TATAAAAATGGACGCCTTTATGGAAATC
Found at i:22897375 original size:28 final size:28
Alignment explanation
Indices: 22897310--22897384 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
22897300 TGTGGTAATA
*
22897310 TATGAAAATGGACGCCTTTATAGAAATC
1 TATGAAAATAGACGCCTTTATAGAAATC
* * *
22897338 TATAAAAATAGACGCTTTTATGGAAATC
1 TATGAAAATAGACGCCTTTATAGAAATC
* *
22897366 TATGAAAATAAAAGCCTTT
1 TATGAAAATAGACGCCTTT
22897385 GTGGCGATCT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.31
Consensus pattern (28 bp):
TATGAAAATAGACGCCTTTATAGAAATC
Found at i:22897555 original size:26 final size:27
Alignment explanation
Indices: 22897493--22897573 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 27
22897483 TAGAGAAATA
22897493 GTAAGTATGGTGAACTCTAAAAGAATG
1 GTAAGTATGGTGAACTCTAAAAGAATG
* * * * *
22897520 ATATGAATGGTTAATTCT-AAAGAATG
1 GTAAGTATGGTGAACTCTAAAAGAATG
** *
22897546 GTAAGTATGGAAAAACCCTAAAAGAATG
1 GTAAGTATGG-TGAACTCTAAAAGAATG
22897574 ATGTATATGG
Statistics
Matches: 40, Mismatches: 12, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
26 15 0.38
27 17 0.43
28 8 0.20
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (27 bp):
GTAAGTATGGTGAACTCTAAAAGAATG
Found at i:22904080 original size:67 final size:67
Alignment explanation
Indices: 22903897--22904100 Score: 248
Period size: 67 Copynumber: 3.0 Consensus size: 67
22903887 ATGGGCTATA
* * * * **
22903897 ATGGGGTATGAGGTGTGAGACCATAGTTCGGCTATGACAACCAATAGAGTTTACCAGGACACTAA
1 ATGGGGTATGAGGTGTAAGACCATAGCTCGACTATGGCAACCAATAGAGTTCGCCAGGACACTAA
22903962 AC
66 AC
* * * * *
22903964 ATGGGGTTTGAGGTGTAAGACCATAGCTCAACTATGGAAACCAATAGAGTTCGTCAGGACATTAA
1 ATGGGGTATGAGGTGTAAGACCATAGCTCGACTATGGCAACCAATAGAGTTCGCCAGGACACTAA
22904029 AC
66 AC
* * * * *
22904031 ATGGGGTATGATGTGTAAGACCATAGCTCGACTATGGCAA-CATAGAGAGTCCGCCAGGATAGTA
1 ATGGGGTATGAGGTGTAAGACCATAGCTCGACTATGGCAACCA-ATAGAGTTCGCCAGGACACTA
22904095 AAC
65 AAC
22904098 ATG
1 ATG
22904101 AGATAGTTCC
Statistics
Matches: 116, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
66 2 0.02
67 114 0.98
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (67 bp):
ATGGGGTATGAGGTGTAAGACCATAGCTCGACTATGGCAACCAATAGAGTTCGCCAGGACACTAA
AC
Found at i:22904134 original size:27 final size:26
Alignment explanation
Indices: 22904104--22904216 Score: 77
Period size: 27 Copynumber: 4.2 Consensus size: 26
22904094 AAACATGAGA
22904104 TAGTTCCTTGGGACAATAAAAACGAGG
1 TAGTTCC-TGGGACAATAAAAACGAGG
* * **
22904131 TAGTCTACTGGGATAATAAATATTG-GG
1 TAGT-TCCTGGGACAATAAA-AACGAGG
* * * *
22904158 TAGTTCGCTAGGACAACAAAAACAAGA
1 TAGTTC-CTGGGACAATAAAAACGAGG
*
22904185 TAGTGTACC-GGGACAATAAAAATGAGG
1 TAGT-T-CCTGGGACAATAAAAACGAGG
22904212 TAGTT
1 TAGTT
22904217 TATCAAGATA
Statistics
Matches: 63, Mismatches: 17, Indels: 13
0.68 0.18 0.14
Matches are distributed among these distances:
26 3 0.05
27 53 0.84
28 6 0.10
29 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGTTCCTGGGACAATAAAAACGAGG
Found at i:22904214 original size:54 final size:54
Alignment explanation
Indices: 22904114--22904216 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 54
22904104 TAGTTCCTTG
* * * * * *
22904114 GGACAATAAAAACGAGGTAGTCTACTGGGATAATAAATATTGGGTAGTTCGCTA
1 GGACAACAAAAACAAGATAGTCTACCGGGACAATAAATAATGGGTAGTTCGCTA
*
22904168 GGACAACAAAAACAAGATAGTGTACCGGGACAATAAA-AATGAGGTAGTT
1 GGACAACAAAAACAAGATAGTCTACCGGGACAATAAATAATG-GGTAGTT
22904217 TATCAAGATA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
53 3 0.07
54 38 0.93
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.21
Consensus pattern (54 bp):
GGACAACAAAAACAAGATAGTCTACCGGGACAATAAATAATGGGTAGTTCGCTA
Found at i:22906325 original size:9 final size:9
Alignment explanation
Indices: 22906311--22906348 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
22906301 TATAGTTTGA
22906311 TATTCGAAT
1 TATTCGAAT
22906320 TATTCGAAT
1 TATTCGAAT
*
22906329 TATTCGAGT
1 TATTCGAAT
*
22906338 TATTTGAAT
1 TATTCGAAT
22906347 TA
1 TA
22906349 GAAAACTCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.32, C:0.08, G:0.13, T:0.47
Consensus pattern (9 bp):
TATTCGAAT
Found at i:22918900 original size:33 final size:32
Alignment explanation
Indices: 22918863--22918939 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 32
22918853 TGGCCCTGCC
* *
22918863 ATGGTCTTACATCCGTAGTGCCATAA-CCCAGTT
1 ATGGTCTTACATCAG-AATGCCA-AAGCCCAGTT
*
22918896 ATGGTCTTATCATCAGAATGCCAAAGCCTAGTT
1 ATGGTCTTA-CATCAGAATGCCAAAGCCCAGTT
22918929 ATGGTCTTACA
1 ATGGTCTTACA
22918940 CATATATATA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
32 4 0.10
33 30 0.77
34 5 0.13
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (32 bp):
ATGGTCTTACATCAGAATGCCAAAGCCCAGTT
Found at i:22944943 original size:10 final size:11
Alignment explanation
Indices: 22944926--22944952 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
22944916 TCTTGTGTTT
22944926 GTTTTTTTGAA
1 GTTTTTTTGAA
22944937 GTTTTTTTGAA
1 GTTTTTTTGAA
22944948 GTTTT
1 GTTTT
22944953 GTTTCGTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.19, T:0.67
Consensus pattern (11 bp):
GTTTTTTTGAA
Found at i:22956899 original size:16 final size:16
Alignment explanation
Indices: 22956873--22956912 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
22956863 TTGTATGTAC
*
22956873 AAAAAAAATTACATAT
1 AAAATAAATTACATAT
* *
22956889 AGAATAAATTATATAT
1 AAAATAAATTACATAT
22956905 AAAATAAA
1 AAAATAAA
22956913 AAAATTGTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (16 bp):
AAAATAAATTACATAT
Found at i:22958998 original size:26 final size:26
Alignment explanation
Indices: 22958961--22959093 Score: 119
Period size: 26 Copynumber: 5.1 Consensus size: 26
22958951 TTGGAAAAGG
22958961 AGGCCTTGAGCCGATGGTTATTTAGC
1 AGGCCTTGAGCCGATGGTTATTTAGC
* *
22958987 TGGCCTTGAGCCGATGTTTATTTAGC
1 AGGCCTTGAGCCGATGGTTATTTAGC
*
22959013 AGGCCTTGAG-CTAGTGGTTATTTATG-
1 AGGCCTTGAGCCGA-TGGTTATTTA-GC
* * * * *
22959039 AAGCATTGAGCCGGTGTTTATTTAGT
1 AGGCCTTGAGCCGATGGTTATTTAGC
* * *
22959065 AGGCTTTGAGCC-AGTGATTATTTATC
1 AGGCCTTGAGCCGA-TGGTTATTTAGC
22959091 AGG
1 AGG
22959094 TACTATGTAC
Statistics
Matches: 86, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
25 3 0.03
26 81 0.94
27 2 0.02
ACGTcount: A:0.20, C:0.15, G:0.29, T:0.36
Consensus pattern (26 bp):
AGGCCTTGAGCCGATGGTTATTTAGC
Found at i:22960244 original size:27 final size:29
Alignment explanation
Indices: 22960206--22960259 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
22960196 ATGGCCTAGG
22960206 ACACAGGCTGT-C-ACACGGCCGTGTGCC
1 ACACAGGCTGTCCTACACGGCCGTGTGCC
22960233 ACACACGG-TGTCCTACACGGCCGTGTG
1 ACACA-GGCTGTCCTACACGGCCGTGTG
22960260 GTTGTTTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 8 0.33
28 3 0.12
29 13 0.54
ACGTcount: A:0.19, C:0.35, G:0.30, T:0.17
Consensus pattern (29 bp):
ACACAGGCTGTCCTACACGGCCGTGTGCC
Found at i:22962497 original size:90 final size:89
Alignment explanation
Indices: 22962391--22962589 Score: 278
Period size: 89 Copynumber: 2.2 Consensus size: 89
22962381 CTCAAACTTA
*
22962391 AAAAAAAAGCAATTAAGTCCTTCCTTTTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATGC
1 AAAAAAAAGCAATTAAGCCCTT-CTTTTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATGC
* *
22962456 ATCAAAAACG-CCCTCAAACTTCTTC
65 ATCAAAAA-GACCATCAAAATTCTTC
* * * **
22962481 AAAAAAAAGCAATTAAGCCCCTGTTTTTTTTTCACTCAATTGGGTGCTTGAACTTTCAAAATGCA
1 AAAAAAAAGCAATTAAGCCCTTCTTTTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATGCA
*
22962546 TCAAAAAGACCATCAAAATTTTTC
66 TCAAAAAGACCATCAAAATTCTTC
22962570 --AAAAAAGCAATTAAGCCCTT
1 AAAAAAAAGCAATTAAGCCCTT
22962590 GCTCTTATTA
Statistics
Matches: 98, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
87 19 0.19
88 1 0.01
89 58 0.59
90 20 0.20
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.31
Consensus pattern (89 bp):
AAAAAAAAGCAATTAAGCCCTTCTTTTTTTTTCACTCAATTGAGCACTTGAACTTTCAAAATGCA
TCAAAAAGACCATCAAAATTCTTC
Found at i:22962651 original size:10 final size:10
Alignment explanation
Indices: 22962636--22962669 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
22962626 TAAATTTTAG
22962636 AAAAATTATT
1 AAAAATTATT
22962646 AAAAA-T-TT
1 AAAAATTATT
22962654 AAAAATTATT
1 AAAAATTATT
22962664 AAAAAT
1 AAAAAT
22962670 AGAATTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 7 0.32
9 2 0.09
10 13 0.59
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAAATTATT
Found at i:22962704 original size:35 final size:35
Alignment explanation
Indices: 22962663--22962732 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
22962653 TAAAAATTAT
* *
22962663 TAAAAA-TAGAATTTTTTTATAAAAATCGTAAAAAA
1 TAAAAATTAGAA-ATTTTTATAAAAATCATAAAAAA
*
22962698 TAAAAATTATAAATTTTTATAAAAATCATAAAAAA
1 TAAAAATTAGAAATTTTTATAAAAATCATAAAAAA
22962733 ATTAACCATC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 27 0.87
36 4 0.13
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (35 bp):
TAAAAATTAGAAATTTTTATAAAAATCATAAAAAA
Found at i:22962968 original size:8 final size:8
Alignment explanation
Indices: 22962914--22963009 Score: 50
Period size: 9 Copynumber: 11.0 Consensus size: 8
22962904 ACATTATAAA
22962914 ATTTTATAT
1 ATTTT-TAT
*
22962923 TTTTTTAT
1 ATTTTTAT
* *
22962931 ATTTCTAG
1 ATTTTTAT
*
22962939 ATGTTTTAG
1 AT-TTTTAT
22962948 ATTTTTTACT
1 A-TTTTTA-T
22962958 ATTTTTAT
1 ATTTTTAT
*
22962966 ATTTTTCT
1 ATTTTTAT
22962974 AATTTTTAAT
1 -ATTTTT-AT
22962984 AAATTTTTAAT
1 --ATTTTT-AT
*
22962995 ATTTTAAT
1 ATTTTTAT
22963003 -TTTTTAT
1 ATTTTTAT
22963010 TAAAATTTAA
Statistics
Matches: 71, Mismatches: 10, Indels: 14
0.75 0.11 0.15
Matches are distributed among these distances:
7 6 0.08
8 20 0.28
9 32 0.45
10 3 0.04
11 10 0.14
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (8 bp):
ATTTTTAT
Found at i:22962979 original size:26 final size:25
Alignment explanation
Indices: 22962950--22963006 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
22962940 TGTTTTAGAT
* *
22962950 TTTTTACT-ATTTTTATATTTTTCTAA
1 TTTTTAATAATTTTTA-ATATTT-TAA
22962976 TTTTTAATAAATTTTTAATATTTTAA
1 TTTTTAAT-AATTTTTAATATTTTAA
22963002 TTTTT
1 TTTTT
22963007 TATTAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 15 0.56
27 5 0.19
28 7 0.26
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (25 bp):
TTTTTAATAATTTTTAATATTTTAA
Found at i:22962991 original size:37 final size:39
Alignment explanation
Indices: 22962909--22963007 Score: 95
Period size: 37 Copynumber: 2.7 Consensus size: 39
22962899 TAACGACATT
* * *
22962909 ATAAAATTTTATATTTTTTTATATTTCTAGATGTTTTAG
1 ATAAATTTTTATATTTTTATATTTTTCTAGATGTTTTAG
22962948 AT---TTTTTACTATTTTTATATTTTTCTA-AT-TTTTA-
1 ATAAATTTTTA-TATTTTTATATTTTTCTAGATGTTTTAG
*
22962982 ATAAATTTTTAATATTTTAAT-TTTTT
1 ATAAATTTTT-ATATTTTTATATTTTT
22963008 ATTAAAATTT
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
34 2 0.04
35 5 0.10
36 12 0.24
37 29 0.57
38 1 0.02
39 2 0.04
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (39 bp):
ATAAATTTTTATATTTTTATATTTTTCTAGATGTTTTAG
Found at i:22963015 original size:28 final size:27
Alignment explanation
Indices: 22962958--22963062 Score: 72
Period size: 26 Copynumber: 3.8 Consensus size: 27
22962948 ATTTTTTACT
* *
22962958 ATTTTTATATTTTTCTAATTTTTAATAA
1 ATTTTTA-ATATTTATAATTTTTAATAA
*
22962986 ATTTTTAATATTT-TAATTTTTTATTAAA
1 ATTTTTAATATTTATAA-TTTTTAAT-AA
* * **
22963014 ATTTAATAATATTTATAACTTTT-ATTG
1 ATTT-TTAATATTTATAATTTTTAATAA
*
22963041 A-TTTTAATTTTTTATAATTTTT
1 ATTTTTAA-TATTTATAATTTTT
22963063 TTCTAATATT
Statistics
Matches: 62, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
25 3 0.05
26 17 0.27
27 13 0.21
28 14 0.23
29 12 0.19
30 3 0.05
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (27 bp):
ATTTTTAATATTTATAATTTTTAATAA
Found at i:22963070 original size:46 final size:46
Alignment explanation
Indices: 22962966--22963079 Score: 115
Period size: 46 Copynumber: 2.4 Consensus size: 46
22962956 CTATTTTTAT
* *
22962966 ATTTTTCTAATTTTTAATAAATTTTTAATATTTTAATTTTTTATTAA
1 ATTTTTCTAATATTT-ATAAACTTTTAATATTTTAATTTTTTATTAA
* ** *
22963013 AATTTAATAATATTTAT-AACTTTTATTGATTTTAATTTTTTA-TAA
1 ATTTTTCTAATATTTATAAACTTTTAAT-ATTTTAATTTTTTATTAA
*
22963058 TTTTTTTCTAATATTTAATAAA
1 -ATTTTTCTAATATTT-ATAAA
22963080 AGCAGGGGCT
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
45 11 0.21
46 27 0.51
47 13 0.25
48 2 0.04
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.61
Consensus pattern (46 bp):
ATTTTTCTAATATTTATAAACTTTTAATATTTTAATTTTTTATTAA
Found at i:22963235 original size:89 final size:87
Alignment explanation
Indices: 22963110--22963306 Score: 247
Period size: 89 Copynumber: 2.3 Consensus size: 87
22963100 TTTTTTGAAA
* * * *
22963110 AAAAAGTTTCATGGTCTTTTTGATGCATTTTGAAAGTTCAAGTACCT-AATTGAGTGCAAAAAAA
1 AAAAAGTTTAAGGGTCTTTTTGATGCATTTTAAAAGTTCAAGT-CCTCAATTGAATGC-AAAAAA
*
22963174 AGCAGGGGAC-TAATTACTTTTTTTT
64 AG-AGGGG-CTTAATTACTTTTTTTG
* * * *
22963199 AAAAGGTTTGAGGGTCTTTTTGATGCATTTTAAAAGTTTAAGTGCTCAATTGAATGCAAAAAAAG
1 AAAAAGTTTAAGGGTCTTTTTGATGCATTTTAAAAGTTCAAGTCCTCAATTGAATGCAAAAAAAG
*
22963264 AGGGGCTTAATTGCTTTTTTTG
66 AGGGGCTTAATTACTTTTTTTG
22963286 AAAAAGTTTAAGGGT-TTTTTG
1 AAAAAGTTTAAGGGTCTTTTTG
22963307 TACCCTCAAG
Statistics
Matches: 95, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
86 7 0.07
87 31 0.33
88 10 0.11
89 47 0.49
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (87 bp):
AAAAAGTTTAAGGGTCTTTTTGATGCATTTTAAAAGTTCAAGTCCTCAATTGAATGCAAAAAAAG
AGGGGCTTAATTACTTTTTTTG
Found at i:22964376 original size:7 final size:7
Alignment explanation
Indices: 22964359--22964392 Score: 59
Period size: 7 Copynumber: 4.7 Consensus size: 7
22964349 AGATTATGTA
22964359 ATTTGAAT
1 ATTT-AAT
22964367 ATTTAAT
1 ATTTAAT
22964374 ATTTAAT
1 ATTTAAT
22964381 ATTTAAT
1 ATTTAAT
22964388 ATTTA
1 ATTTA
22964393 TTTTTCTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 22 0.85
8 4 0.15
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (7 bp):
ATTTAAT
Found at i:22967014 original size:23 final size:21
Alignment explanation
Indices: 22966987--22967061 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 21
22966977 TAATGAAACA
22966987 ATAAATGAGCTTTAAAT-AATTT
1 ATAAATGAGCTTTAAATGAA--T
*
22967009 ATTAAATGAGTTTTAAATGAAT
1 A-TAAATGAGCTTTAAATGAAT
** *
22967031 ATAAATGAGCTTGTTTATGAAC
1 ATAAATGAGCTT-TAAATGAAT
22967053 ATAAATGAG
1 ATAAATGAG
22967062 TTGAATAAGC
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
21 10 0.22
22 18 0.40
23 15 0.33
24 2 0.04
ACGTcount: A:0.44, C:0.04, G:0.15, T:0.37
Consensus pattern (21 bp):
ATAAATGAGCTTTAAATGAAT
Found at i:22970012 original size:21 final size:20
Alignment explanation
Indices: 22969988--22970086 Score: 101
Period size: 21 Copynumber: 4.8 Consensus size: 20
22969978 ATACAACTTC
22969988 TTTTAAATCGATTGCTCTTAT
1 TTTTAAATCGATTG-TCTTAT
22970009 TTTTAAATCGATTGTCTATAT
1 TTTTAAATCGATTGTCT-TAT
* * *
22970030 GTTTAAATTGACTGTTCTTAT
1 TTTTAAATCGATTG-TCTTAT
*
22970051 GTTTAAATCGATTGTC-TAT
1 TTTTAAATCGATTGTCTTAT
*
22970070 GTGTTTAAATTGATTGT
1 -T-TTTAAATCGATTGT
22970087 ATCTTTGTTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
19 3 0.04
20 5 0.07
21 56 0.84
22 3 0.04
ACGTcount: A:0.25, C:0.09, G:0.14, T:0.52
Consensus pattern (20 bp):
TTTTAAATCGATTGTCTTAT
Found at i:22970049 original size:42 final size:42
Alignment explanation
Indices: 22969989--22970105 Score: 155
Period size: 42 Copynumber: 2.8 Consensus size: 42
22969979 TACAACTTCT
* * *
22969989 TTTAAATCGATTGCTCTTATTTTTAAATCGATTGTCTATATG
1 TTTAAATTGATTGTTCTTATGTTTAAATCGATTGTCTATATG
* *
22970031 TTTAAATTGACTGTTCTTATGTTTAAATCGATTGTCTATGTG
1 TTTAAATTGATTGTTCTTATGTTTAAATCGATTGTCTATATG
* *
22970073 TTTAAATTGATTGTATCTT-TGTTTGAATTGATT
1 TTTAAATTGATTGT-TCTTATGTTTAAATCGATT
22970106 TTTTTTGTAA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
42 62 0.94
43 4 0.06
ACGTcount: A:0.25, C:0.09, G:0.15, T:0.52
Consensus pattern (42 bp):
TTTAAATTGATTGTTCTTATGTTTAAATCGATTGTCTATATG
Found at i:22970095 original size:21 final size:21
Alignment explanation
Indices: 22969989--22970105 Score: 96
Period size: 21 Copynumber: 5.6 Consensus size: 21
22969979 TACAACTTCT
*
22969989 TTTAAATCGATTGCTCT-TATT-
1 TTTAAATTGATTG-TCTAT-TTG
* *
22970010 TTTAAATCGATTGTCTATATG
1 TTTAAATTGATTGTCTATTTG
* *
22970031 TTTAAATTGACTGTTCT-TATG
1 TTTAAATTGATTG-TCTATTTG
* *
22970052 TTTAAATCGATTGTCTATGTG
1 TTTAAATTGATTGTCTATTTG
* *
22970073 TTTAAATTGATTGTATCTTTG
1 TTTAAATTGATTGTCTATTTG
*
22970094 TTTGAATTGATT
1 TTTAAATTGATT
22970106 TTTTTTGTAA
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
20 7 0.09
21 71 0.88
22 3 0.04
ACGTcount: A:0.25, C:0.09, G:0.15, T:0.52
Consensus pattern (21 bp):
TTTAAATTGATTGTCTATTTG
Found at i:22973067 original size:3 final size:3
Alignment explanation
Indices: 22973037--22973088 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
22973027 ATTAATTAAT
* * * * *
22973037 TTA TTG TTA TTA TTT TTA TTGG TCA TTA TTA TTA TTT TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA
22973083 TTA TTA
1 TTA TTA
22973089 GCCTTTTATT
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
3 37 0.97
4 1 0.03
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:22973100 original size:25 final size:27
Alignment explanation
Indices: 22973072--22973136 Score: 71
Period size: 31 Copynumber: 2.3 Consensus size: 27
22973062 TTATTATTAT
22973072 TTTTATTATTATTAT-TAG-CCTTTTA
1 TTTTATTATTATTATATAGACCTTTTA
*
22973097 TTTTTTTAATCTTATTATATAGATCCTTTTA
1 TTTTATT-A--TTATTATATAGA-CCTTTTA
22973128 TTTTATTAT
1 TTTTATTAT
22973137 AAGATATTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
25 6 0.19
26 1 0.03
28 8 0.25
29 3 0.09
30 1 0.03
31 13 0.41
ACGTcount: A:0.25, C:0.08, G:0.03, T:0.65
Consensus pattern (27 bp):
TTTTATTATTATTATATAGACCTTTTA
Found at i:22975579 original size:39 final size:39
Alignment explanation
Indices: 22975521--22975663 Score: 173
Period size: 39 Copynumber: 3.7 Consensus size: 39
22975511 AAAAATGGGA
* * *
22975521 TACTGATTCTACTAAAAGTATGCTCAATCGGGTCATACC
1 TACTGATTCTACTGAAAGTATGCTCAATCGAGCCATACC
* * *
22975560 TACCGATTCTACGGAAAGTATGCTCAATCAAGCCATA-C
1 TACTGATTCTACTGAAAGTATGCTCAATCGAGCCATACC
* *
22975598 TCACTAATTCTACTGAAAGTATGCTTAATCGAGCCATACC
1 T-ACTGATTCTACTGAAAGTATGCTCAATCGAGCCATACC
* *
22975638 CACTGATTGTACTGAAAGT-TGCTCAA
1 TACTGATTCTACTGAAAGTATGCTCAA
22975664 ACGAACATTA
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
38 8 0.09
39 78 0.90
40 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (39 bp):
TACTGATTCTACTGAAAGTATGCTCAATCGAGCCATACC
Found at i:22979999 original size:33 final size:33
Alignment explanation
Indices: 22979954--22980018 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
22979944 CTACCTCATT
*
22979954 GTGACGTTGGGATATCGACTCTTTCTTATCCCC
1 GTGACGTCGGGATATCGACTCTTTCTTATCCCC
22979987 GTGACGTCGGGATATCGACTCTTTCTTATCCC
1 GTGACGTCGGGATATCGACTCTTTCTTATCCC
22980019 AACGTCAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.15, C:0.28, G:0.22, T:0.35
Consensus pattern (33 bp):
GTGACGTCGGGATATCGACTCTTTCTTATCCCC
Found at i:22990542 original size:17 final size:18
Alignment explanation
Indices: 22990517--22990556 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
22990507 GGTTCTGTGG
*
22990517 AAAAATGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
22990534 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
22990552 AAAAT
1 AAAAT
22990557 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:22990734 original size:15 final size:15
Alignment explanation
Indices: 22990714--22990744 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
22990704 AAAACAATAT
*
22990714 AACTCTTGACTTTTC
1 AACTCTTGACCTTTC
22990729 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
22990744 A
1 A
22990745 CTTACATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:22994116 original size:15 final size:15
Alignment explanation
Indices: 22994106--22994135 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22994096 TCCCTTCTTG
22994106 ACCACGACCTTTTCC
1 ACCACGACCTTTTCC
*
22994121 ACCACGACCATTTCC
1 ACCACGACCTTTTCC
22994136 TCGATCTCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.47, G:0.07, T:0.23
Consensus pattern (15 bp):
ACCACGACCTTTTCC
Found at i:22994902 original size:17 final size:18
Alignment explanation
Indices: 22994877--22994916 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
22994867 CAAATTGTGG
*
22994877 AAAAATGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
22994894 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
22994912 AAAAT
1 AAAAT
22994917 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:22995094 original size:15 final size:15
Alignment explanation
Indices: 22995074--22995104 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
22995064 AAAACAATAT
22995074 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
22995089 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
22995104 A
1 A
22995105 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:22997928 original size:20 final size:20
Alignment explanation
Indices: 22997903--22997941 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
22997893 GAGTTTTAGA
22997903 AACGTGGCGCTGTGAGGGGC
1 AACGTGGCGCTGTGAGGGGC
22997923 AACGTGGCGCTGTGAGGGG
1 AACGTGGCGCTGTGAGGGG
22997942 GAAGAAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.18, G:0.51, T:0.15
Consensus pattern (20 bp):
AACGTGGCGCTGTGAGGGGC
Found at i:22999319 original size:17 final size:18
Alignment explanation
Indices: 22999297--22999332 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
22999287 AATCCAAAAG
22999297 TATATA-ATATTTTTAAA
1 TATATATATATTTTTAAA
22999314 TATATATTATATTTTTAAA
1 TATATA-TATATTTTTAAA
22999333 AAAATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
19 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TATATATATATTTTTAAA
Found at i:22999341 original size:20 final size:19
Alignment explanation
Indices: 22999298--22999337 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
22999288 ATCCAAAAGT
* * *
22999298 ATATAATATTTTTAAATAT
1 ATATTATATTTTTAAAAAA
22999317 ATATTATATTTTTAAAAAA
1 ATATTATATTTTTAAAAAA
22999336 AT
1 AT
22999338 TATTTAAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
ATATTATATTTTTAAAAAA
Found at i:23004532 original size:14 final size:14
Alignment explanation
Indices: 23004513--23004539 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23004503 AAATGGAACT
23004513 GTAAGGCAACAACA
1 GTAAGGCAACAACA
23004527 GTAAGGCAACAAC
1 GTAAGGCAACAAC
23004540 GACAAATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.22, G:0.22, T:0.07
Consensus pattern (14 bp):
GTAAGGCAACAACA
Found at i:23019337 original size:17 final size:16
Alignment explanation
Indices: 23019311--23019342 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
23019301 GATATATCTT
23019311 CGATAAGCTTCCAATC
1 CGATAAGCTTCCAATC
23019327 CGATCAAGCTTCCAAT
1 CGAT-AAGCTTCCAAT
23019343 AATCTGGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.25
Consensus pattern (16 bp):
CGATAAGCTTCCAATC
Found at i:23020214 original size:15 final size:15
Alignment explanation
Indices: 23020194--23020222 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
23020184 TCCTAAGAGC
23020194 TGAACAGAAGCTCGT
1 TGAACAGAAGCTCGT
23020209 TGAACAGAAGCTCG
1 TGAACAGAAGCTCG
23020223 AAAGAGCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.21, G:0.28, T:0.17
Consensus pattern (15 bp):
TGAACAGAAGCTCGT
Found at i:23020215 original size:36 final size:36
Alignment explanation
Indices: 23020175--23020244 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
23020165 GTAAGAGCTT
* *
23020175 AACAGAAACTCCTAAGAGCTGAACAGAAGCTCGTTG
1 AACAGAAACTCCAAAGAGCTAAACAGAAGCTCGTTG
* *
23020211 AACAGAAGCTCGAAAGAGCTAAACAGAAGCTCGT
1 AACAGAAACTCCAAAGAGCTAAACAGAAGCTCGT
23020245 AAAAGCTAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.41, C:0.21, G:0.23, T:0.14
Consensus pattern (36 bp):
AACAGAAACTCCAAAGAGCTAAACAGAAGCTCGTTG
Found at i:23020237 original size:21 final size:21
Alignment explanation
Indices: 23020211--23020253 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
23020201 AAGCTCGTTG
23020211 AACAGAAGCTCG-AAAGAGCTA
1 AACAGAAGCTCGTAAA-AGCTA
23020232 AACAGAAGCTCGTAAAAGCTA
1 AACAGAAGCTCGTAAAAGCTA
23020253 A
1 A
23020254 GAAAAAAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.49, C:0.19, G:0.21, T:0.12
Consensus pattern (21 bp):
AACAGAAGCTCGTAAAAGCTA
Found at i:23020415 original size:21 final size:21
Alignment explanation
Indices: 23020391--23020544 Score: 119
Period size: 21 Copynumber: 7.3 Consensus size: 21
23020381 CAAACTCGAA
23020391 AGCTAAATAGAAGCTCGTAAG
1 AGCTAAATAGAAGCTCGTAAG
** * * *
23020412 AGCTTGACAGAAACTCATAAG
1 AGCTAAATAGAAGCTCGTAAG
* *
23020433 AGTTGAATAGAAGCTCGTAAG
1 AGCTAAATAGAAGCTCGTAAG
* * *
23020454 AGCTGAATAGAAACTCATAAG
1 AGCTAAATAGAAGCTCGTAAG
* * * * *
23020475 AGTTGAACAGAAACTCATAAG
1 AGCTAAATAGAAGCTCGTAAG
* * *
23020496 AGTTTAATAGAAGCTCGAAAG
1 AGCTAAATAGAAGCTCGTAAG
* * *
23020517 AGCTAAACAGAAGCTCGAAAA
1 AGCTAAATAGAAGCTCGTAAG
23020538 AGCTAAA
1 AGCTAAA
23020545 CAAAAAGTAA
Statistics
Matches: 108, Mismatches: 25, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 108 1.00
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.19
Consensus pattern (21 bp):
AGCTAAATAGAAGCTCGTAAG
Found at i:23020443 original size:42 final size:42
Alignment explanation
Indices: 23020396--23020497 Score: 152
Period size: 42 Copynumber: 2.4 Consensus size: 42
23020386 TCGAAAGCTA
23020396 AATAGAAGCTCGTAAGAGCTTG-ACAGAAACTCATAAGAGTTG
1 AATAGAAGCTCGTAAGAGC-TGAACAGAAACTCATAAGAGTTG
*
23020438 AATAGAAGCTCGTAAGAGCTGAATAGAAACTCATAAGAGTTG
1 AATAGAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGTTG
* * *
23020480 AACAGAAACTCATAAGAG
1 AATAGAAGCTCGTAAGAG
23020498 TTTAATAGAA
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 2 0.04
42 53 0.96
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.20
Consensus pattern (42 bp):
AATAGAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGTTG
Found at i:23020495 original size:63 final size:63
Alignment explanation
Indices: 23020391--23020528 Score: 206
Period size: 63 Copynumber: 2.2 Consensus size: 63
23020381 CAAACTCGAA
* * *
23020391 AGCTAAATAGAAGCTCGTAAGAGCTTGACAGAAACTCATAAGAGTTGAATAGAAGCTCGTAAG
1 AGCTAAATAGAAACTCATAAGAGCTTGACAGAAACTCATAAGAGTTGAATAGAAGCTCGAAAG
* *
23020454 AGCTGAATAGAAACTCATAAGAG-TTGAACAGAAACTCATAAGAGTTTAATAGAAGCTCGAAAG
1 AGCTAAATAGAAACTCATAAGAGCTTG-ACAGAAACTCATAAGAGTTGAATAGAAGCTCGAAAG
*
23020517 AGCTAAACAGAA
1 AGCTAAATAGAA
23020529 GCTCGAAAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
62 3 0.04
63 64 0.96
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.20
Consensus pattern (63 bp):
AGCTAAATAGAAACTCATAAGAGCTTGACAGAAACTCATAAGAGTTGAATAGAAGCTCGAAAG
Found at i:23020518 original size:42 final size:42
Alignment explanation
Indices: 23020420--23020507 Score: 131
Period size: 42 Copynumber: 2.1 Consensus size: 42
23020410 AGAGCTTGAC
* * *
23020420 AGAAACTCATAAGAGTTGAATAGAAGCTCGTAAGAGCTGAAT
1 AGAAACTCATAAGAGTTGAACAGAAACTCATAAGAGCTGAAT
* *
23020462 AGAAACTCATAAGAGTTGAACAGAAACTCATAAGAGTTTAAT
1 AGAAACTCATAAGAGTTGAACAGAAACTCATAAGAGCTGAAT
23020504 AGAA
1 AGAA
23020508 GCTCGAAAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.47, C:0.11, G:0.20, T:0.22
Consensus pattern (42 bp):
AGAAACTCATAAGAGTTGAACAGAAACTCATAAGAGCTGAAT
Found at i:23020552 original size:290 final size:284
Alignment explanation
Indices: 23020154--23020675 Score: 805
Period size: 290 Copynumber: 1.8 Consensus size: 284
23020144 TCGAAAGCTA
* * *
23020154 AATAAAAGCTCGTAAGAGCTTAACAGAAACTCCTAAGAGCTGAACAGAAGCTCGTTGAACAGAAG
1 AATAAAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGCTGAACAGAAACTCGTTGAACAGAAG
*
23020219 CTCGAAAGAGCTAAACAGAAGCTCGTAAAAGCTAAGAAAAAAGTAAAACACGAGAGTTCGTAACA
66 CTCGAAAGAGCTAAACAGAAGCTCGAAAAAGCTAAGAAAAAAGTAAAACACGAGAGTTCGTAACA
* * *
23020284 AATGTTGAACCCTGGTTTACTTCGGTAATTTTTTGATATCATCCTCCAATACCGTCATACGCCAA
131 AATGTTGAACCCCGATTTACTTCGGTAATTTTCTGATATCATCCTCCAATACCGTCATACGCCAA
* *
23020349 ATCACGAGTGTACTCAAAT-TCCGCGTTCCATTCAAACTCGAAAGCTAAATAGAAGCTCGTAAGA
196 ATCACGAATGTACTCAAATCT-CGCATTCCATTCAAACTCGAAAGCTAAATAGAAGCTCGTAAGA
23020413 GCTTGACAGAAACTCATAAGAGTTG
260 GCTTGACAGAAACTCATAAGAGTTG
* * * *
23020438 AATAGAAGCTCGTAAGAGCTGAATAGAAACTCATAAGAGTTGAACAGAAACTCATAAGAGTTTAA
1 AATAAAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGCTGAACAGAAACTC------GTTGAA
*
23020503 TAGAAGCTCGAAAGAGCTAAACAGAAGCTCGAAAAAGCTAA-ACAAAAAGTAAAACACGAGAGTT
60 CAGAAGCTCGAAAGAGCTAAACAGAAGCTCGAAAAAGCTAAGA-AAAAAGTAAAACACGAGAGTT
* * *
23020567 CGTAACAAATGTTGAACCCCGATTTACTTCGGTAATTTTCTGATATCTTTCTCCAATACTGTCAT
124 CGTAACAAATGTTGAACCCCGATTTACTTCGGTAATTTTCTGATATCATCCTCCAATACCGTCAT
23020632 ACGCCAAATCACGAATGTACTCAAATCTCGCATTCCATTCAAAC
189 ACGCCAAATCACGAATGTACTCAAATCTCGCATTCCATTCAAAC
23020676 CAAATATCCA
Statistics
Matches: 213, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
284 47 0.22
289 1 0.00
290 164 0.77
291 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.23
Consensus pattern (284 bp):
AATAAAAGCTCGTAAGAGCTGAACAGAAACTCATAAGAGCTGAACAGAAACTCGTTGAACAGAAG
CTCGAAAGAGCTAAACAGAAGCTCGAAAAAGCTAAGAAAAAAGTAAAACACGAGAGTTCGTAACA
AATGTTGAACCCCGATTTACTTCGGTAATTTTCTGATATCATCCTCCAATACCGTCATACGCCAA
ATCACGAATGTACTCAAATCTCGCATTCCATTCAAACTCGAAAGCTAAATAGAAGCTCGTAAGAG
CTTGACAGAAACTCATAAGAGTTG
Found at i:23021855 original size:30 final size:30
Alignment explanation
Indices: 23021765--23021857 Score: 116
Period size: 30 Copynumber: 3.1 Consensus size: 30
23021755 GAATAAGTTG
* * * *
23021765 CTCACACAAGTTAACAGTATATCAAGGTTG
1 CTCACACAAGCTAACATTATATCGAGGTTA
*
23021795 CTCACACAAGCTAACATTATAAT-GAAGTTA
1 CTCACACAAGCTAACATTAT-ATCGAGGTTA
*
23021825 CTCACACAAGCTGACATTATATCGAGGTTA
1 CTCACACAAGCTAACATTATATCGAGGTTA
23021855 CTC
1 CTC
23021858 GTCCAGGATG
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
29 2 0.04
30 50 0.93
31 2 0.04
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.27
Consensus pattern (30 bp):
CTCACACAAGCTAACATTATATCGAGGTTA
Found at i:23026414 original size:13 final size:13
Alignment explanation
Indices: 23026396--23026421 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23026386 CCATTATTCA
23026396 TATATCTCTCACT
1 TATATCTCTCACT
23026409 TATATCTCTCACT
1 TATATCTCTCACT
23026422 CCTAACCTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (13 bp):
TATATCTCTCACT
Found at i:23026732 original size:15 final size:15
Alignment explanation
Indices: 23026708--23026737 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23026698 AAATGTTTTC
23026708 TGGAACCTTCAACAA
1 TGGAACCTTCAACAA
*
23026723 TGGAAGCTTCAACAA
1 TGGAACCTTCAACAA
23026738 ACAATTTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.23, G:0.17, T:0.20
Consensus pattern (15 bp):
TGGAACCTTCAACAA
Found at i:23031559 original size:18 final size:18
Alignment explanation
Indices: 23031536--23031572 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
23031526 TGAAGTAGTA
23031536 TTGATACTCATATTAGGT
1 TTGATACTCATATTAGGT
23031554 TTGATACTCATATTAGGT
1 TTGATACTCATATTAGGT
23031572 T
1 T
23031573 AACTTTGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (18 bp):
TTGATACTCATATTAGGT
Found at i:23037274 original size:23 final size:23
Alignment explanation
Indices: 23037248--23037345 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
23037238 ATAAGTGCCA
*
23037248 CACTGGTATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
23037271 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
23037294 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
23037316 CACTGACATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
23037339 CACTGAT
1 CACTGAT
23037346 CAATAACACT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
22 20 0.29
23 48 0.71
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:23037313 original size:45 final size:46
Alignment explanation
Indices: 23037248--23037343 Score: 167
Period size: 45 Copynumber: 2.1 Consensus size: 46
23037238 ATAAGTGCCA
* *
23037248 CACTGGTATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTAC
1 CACTGGTATGTAGCCAAAGCTACCACTGACATGTAGCCGAAGCTAC
23037294 CACTGG-ATGTAGCCAAAGCTACCACTGACATGTAGCCGAAGCTAC
1 CACTGGTATGTAGCCAAAGCTACCACTGACATGTAGCCGAAGCTAC
23037339 CACTG
1 CACTG
23037344 ATCAATAACA
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 42 0.88
46 6 0.12
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (46 bp):
CACTGGTATGTAGCCAAAGCTACCACTGACATGTAGCCGAAGCTAC
Found at i:23040673 original size:50 final size:50
Alignment explanation
Indices: 23040611--23040794 Score: 214
Period size: 50 Copynumber: 3.7 Consensus size: 50
23040601 ATTATGTGTA
*
23040611 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATTATGTGATTCTATG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATTATGTGATTCTATG
**
23040661 TAAGACCATAGCTGGGCTATGGCATCGGTATGTGATTATGTGATCTCGTA--
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATTATGTGAT-TC-TATG
** * * *
23040711 TAAGATGATAGCTGGGCTATGGCATCAATACGTGA-TATATGATTAC-GTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATTATGTGATT-CTATG
* * *
23040760 TAAGACTATAGCTGGGTTATGGCATTAATATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCAATATGTGA
23040795 ATATATGTAA
Statistics
Matches: 116, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
48 1 0.01
49 38 0.33
50 73 0.63
51 2 0.02
52 2 0.02
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.33
Consensus pattern (50 bp):
TAAGACCATAGCTGGGCTATGGCATCAATATGTGATTATGTGATTCTATG
Found at i:23040792 original size:99 final size:100
Alignment explanation
Indices: 23040608--23040794 Score: 252
Period size: 99 Copynumber: 1.9 Consensus size: 100
23040598 GTGATTATGT
* * *
23040608 GTATAAGACCATAGCTGGGCTATGGCATCGATATGTGATTATGTGATTCTATGTAAGACCATAGC
1 GTATAAGACCATAGCTGGGCTATGGCATCAATACGTGATTATATGATTCTATGTAAGACCATAGC
**
23040673 TGGGCTATGGCATCGGTATGTGATTATGTGATCTC
66 TGGGCTATGGCATCAATATGTGATTATGTGATCTC
** * *
23040708 GTATAAGATGATAGCTGGGCTATGGCATCAATACGTGA-TATATGATTAC-GTGTAAGACTATAG
1 GTATAAGACCATAGCTGGGCTATGGCATCAATACGTGATTATATGATT-CTATGTAAGACCATAG
* *
23040771 CTGGGTTATGGCATTAATATGTGA
65 CTGGGCTATGGCATCAATATGTGA
23040795 ATATATGTAA
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
99 40 0.53
100 35 0.47
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.33
Consensus pattern (100 bp):
GTATAAGACCATAGCTGGGCTATGGCATCAATACGTGATTATATGATTCTATGTAAGACCATAGC
TGGGCTATGGCATCAATATGTGATTATGTGATCTC
Found at i:23040805 original size:42 final size:42
Alignment explanation
Indices: 23040758--23040868 Score: 143
Period size: 42 Copynumber: 2.6 Consensus size: 42
23040748 TATGATTACG
* * *
23040758 TGTAAGACTATAGCTGGGTTATGGCATTAATATGTGAATATA
1 TGTAAGACTATAGTTGGGCTATGGCATTAATATGTGAAGATA
* *
23040800 TGTAAGA-TCATAGTTGGGCTATGGCATTATTATGTGAAGATG
1 TGTAAGACT-ATAGTTGGGCTATGGCATTAATATGTGAAGATA
* *
23040842 TGTAAGACCATAGTTGGACTATGGCAT
1 TGTAAGACTATAGTTGGGCTATGGCAT
23040869 CGAGGAAACG
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
41 1 0.02
42 59 0.98
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (42 bp):
TGTAAGACTATAGTTGGGCTATGGCATTAATATGTGAAGATA
Found at i:23042965 original size:18 final size:18
Alignment explanation
Indices: 23042939--23042976 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
23042929 ATTCTTGGGT
* *
23042939 TTAATCGGTTTGCGGGCA
1 TTAACCGGTTTGCAGGCA
23042957 TTAACCGGTTTGCAGGCA
1 TTAACCGGTTTGCAGGCA
23042975 TT
1 TT
23042977 TGTTCAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.34
Consensus pattern (18 bp):
TTAACCGGTTTGCAGGCA
Found at i:23047844 original size:5 final size:5
Alignment explanation
Indices: 23047836--23047861 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
23047826 AAATTAACGT
23047836 TTATA TTATA TTATA TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA T
23047862 GTATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:23049745 original size:16 final size:16
Alignment explanation
Indices: 23049724--23049775 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
23049714 TTTGGTTCGC
23049724 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
23049740 TGTATTGGATTAGAGC
1 TGTATTGGATTAGAGG
23049756 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23049772 TGTA
1 TGTA
23049776 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.25, C:0.02, G:0.35, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:23051364 original size:18 final size:18
Alignment explanation
Indices: 23051341--23051375 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
23051331 AAAAAGTCTA
*
23051341 AATTTGGGAAATGTTTAG
1 AATTTGGGAAATATTTAG
23051359 AATTTGGGAAATATTTA
1 AATTTGGGAAATATTTA
23051376 ACTTTTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.23, T:0.40
Consensus pattern (18 bp):
AATTTGGGAAATATTTAG
Found at i:23064884 original size:15 final size:15
Alignment explanation
Indices: 23064864--23064897 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
23064854 AACTACCAAC
23064864 TTTCATAGGTGTAAA
1 TTTCATAGGTGTAAA
23064879 TTTCATAGGTGTAAA
1 TTTCATAGGTGTAAA
23064894 TTTC
1 TTTC
23064898 TGACTTTAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (15 bp):
TTTCATAGGTGTAAA
Found at i:23065817 original size:20 final size:21
Alignment explanation
Indices: 23065784--23065824 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
23065774 TTTTGCTCCT
23065784 TTTTTCAGAAATATTTTTTTA
1 TTTTTCAGAAATATTTTTTTA
*
23065805 TTTTTCA-AGATATTTTTTTA
1 TTTTTCAGAAATATTTTTTTA
23065825 GTTGTAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (21 bp):
TTTTTCAGAAATATTTTTTTA
Found at i:23068580 original size:100 final size:102
Alignment explanation
Indices: 23068469--23068652 Score: 293
Period size: 100 Copynumber: 1.8 Consensus size: 102
23068459 AAAGTGATGG
*
23068469 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGT-GT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGAT-GGTCACATGTGTAGT
*
23068531 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTTAA
65 ACTATGTACAGGCTACTATGCGTACCGGATAGCTTTAA
* *
23068569 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
*
23068634 TTATGTACAGGCTACTATG
66 CTATGTACAGGCTACTATG
23068653 TGAACCGGTA
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
100 40 0.53
101 12 0.16
102 24 0.32
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
CTATGTACAGGCTACTATGCGTACCGGATAGCTTTAA
Found at i:23068597 original size:51 final size:51
Alignment explanation
Indices: 23068461--23068660 Score: 219
Period size: 51 Copynumber: 4.0 Consensus size: 51
23068451 TGAAAGTGAA
* * *
23068461 AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-
1 AGTGATAGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * *
23068511 A-TGATAGGTCGCATGTGT-GTACTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGATA-GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * *
23068561 AGCT-TTAATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
1 AG-TGATAGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
* * * * *
23068612 AGTGATGGTCACATGTGTAGTATTATGTACAGGCTACTATGTGAACCGG
1 AGTGATAGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG
23068661 TATCATTAAT
Statistics
Matches: 122, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
49 32 0.26
50 20 0.16
51 69 0.57
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (51 bp):
AGTGATAGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAT
Found at i:23068728 original size:46 final size:43
Alignment explanation
Indices: 23068656--23068759 Score: 111
Period size: 46 Copynumber: 2.3 Consensus size: 43
23068646 TACTATGTGA
*
23068656 ACCGGTATCATTAATTATAAGGTGGTTGTTACGTGCTG-ATCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGTTACGTGCTGAATCC
* **
23068698 TACCGGATATCATTGATTACAAAGGGTGGTTGTTGTGTGCTGAATCC
1 -ACCGG-TATCATTAATTA-AAA-GGTGGTTGTTACGTGCTGAATCC
23068745 ACCGTGTATCTATTA
1 ACCG-GTATC-ATTA
23068760 TTATTTCGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
43 5 0.10
44 11 0.22
45 2 0.04
46 24 0.48
47 8 0.16
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGTTACGTGCTGAATCC
Found at i:23068899 original size:16 final size:16
Alignment explanation
Indices: 23068878--23068909 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23068868 TGATTGAAAG
*
23068878 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
23068894 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
23068910 GCAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:23076857 original size:87 final size:86
Alignment explanation
Indices: 23076701--23076863 Score: 220
Period size: 87 Copynumber: 1.9 Consensus size: 86
23076691 TACATGCATA
* * *** * * *
23076701 AGGTTGAATTCTTACTTTTTATGAATTCATATCTCAGGGTTTGGGTGTTCTTATTGAGACAGGCT
1 AGGTTGAATTCTTACTTTTAATGAATTCATATCCCAAAATTTGGGTGGTCTTATTGAGACAGACA
23076766 TGATGAATTCATTGACATGTG
66 TGATGAATTCATTGACATGTG
*
23076787 AGGTTGAATTTCTTA-TTCTTAATGAGTTCATATCCCAAAATTTGGGTGGTCTTATTGAGACAGA
1 AGGTTGAA-TTCTTACTT-TTAATGAATTCATATCCCAAAATTTGGGTGGTCTTATTGAGACAGA
23076851 CATGATGAATTCA
64 CATGATGAATTCA
23076864 CCGAATTAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
86 10 0.15
87 56 0.85
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.40
Consensus pattern (86 bp):
AGGTTGAATTCTTACTTTTAATGAATTCATATCCCAAAATTTGGGTGGTCTTATTGAGACAGACA
TGATGAATTCATTGACATGTG
Found at i:23079123 original size:14 final size:13
Alignment explanation
Indices: 23079111--23079158 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
23079101 AACTAATATT
23079111 TAAGTAAATATATA
1 TAAGTAAATATA-A
*
23079125 TAA-TATA-ATAA
1 TAAGTAAATATAA
23079136 TAAAGTAAATATAA
1 T-AAGTAAATATAA
23079150 TAAGTAAAT
1 TAAGTAAAT
23079159 GAAATAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
11 2 0.07
12 5 0.17
13 14 0.48
14 8 0.28
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.33
Consensus pattern (13 bp):
TAAGTAAATATAA
Found at i:23079146 original size:17 final size:18
Alignment explanation
Indices: 23079126--23079187 Score: 60
Period size: 17 Copynumber: 3.6 Consensus size: 18
23079116 AAATATATAT
23079126 AATATAATAA-TAAA-GTA
1 AATATAATAAGTAAATG-A
23079143 AATATAATAAGTAAATGA
1 AATATAATAAGTAAATGA
*
23079161 AATA-AATAAAG-AAAAGA
1 AATATAAT-AAGTAAATGA
*
23079178 AAAATAATAA
1 AATATAATAA
23079188 AAAGAACAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
17 23 0.59
18 15 0.38
19 1 0.03
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (18 bp):
AATATAATAAGTAAATGA
Found at i:23079166 original size:22 final size:21
Alignment explanation
Indices: 23079115--23079168 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
23079105 AATATTTAAG
*
23079115 TAAATATATATAATATAATAA
1 TAAATAAATATAATATAATAA
*
23079136 TAAAGTAAATATAATA-AGTAAA
1 TAAA-TAAATATAATATAAT-AA
23079158 TGAAATAAATA
1 T-AAATAAATA
23079169 AAGAAAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
21 6 0.21
22 19 0.68
23 3 0.11
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (21 bp):
TAAATAAATATAATATAATAA
Found at i:23091469 original size:7 final size:7
Alignment explanation
Indices: 23091457--23091484 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
23091447 CCCAACCTCT
23091457 TTTTGCA
1 TTTTGCA
23091464 TTTTGCA
1 TTTTGCA
23091471 TTTTGCA
1 TTTTGCA
23091478 TTTTGCA
1 TTTTGCA
23091485 AAAAAATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57
Consensus pattern (7 bp):
TTTTGCA
Found at i:23094917 original size:101 final size:101
Alignment explanation
Indices: 23094742--23095197 Score: 912
Period size: 101 Copynumber: 4.5 Consensus size: 101
23094732 GGAATATACT
23094742 GAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAGAC
1 GAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAGAC
23094807 TCCTAATTTATTATAATTTTTTCTTAAGAACACATC
66 TCCTAATTTATTATAATTTTTTCTTAAGAACACATC
23094843 GAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAGAC
1 GAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAGAC
23094908 TCCTAATTTATTATAATTTTTTCTTAAGAACACATC
66 TCCTAATTTATTATAATTTTTTCTTAAGAACACATC
23094944 GAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAGAC
1 GAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAGAC
23095009 TCCTAATTTATTATAATTTTTTCTTAAGAACACATC
66 TCCTAATTTATTATAATTTTTTCTTAAGAACACATC
23095045 GAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAGAC
1 GAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAGAC
23095110 TCCTAATTTATTATAATTTTTTCTTAAGAACACATC
66 TCCTAATTTATTATAATTTTTTCTTAAGAACACATC
23095146 GAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACT
1 GAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACT
23095198 TAGTCCAACA
Statistics
Matches: 355, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 355 1.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (101 bp):
GAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCCGGTTACTCAGCCCAGCAGAC
TCCTAATTTATTATAATTTTTTCTTAAGAACACATC
Found at i:23096093 original size:18 final size:17
Alignment explanation
Indices: 23096055--23096112 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
23096045 CCAAATAAGT
*
23096055 AATAAAT-AATAAAATAA
1 AATAAATAAATAAGA-AA
23096072 AATAAAGTAAGA-AAGAAA
1 AATAAA-TAA-ATAAGAAA
*
23096090 AATAAATAAATAATAAA
1 AATAAATAAATAAGAAA
23096107 AATAAA
1 AATAAA
23096113 AATTGGGTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
16 1 0.03
17 20 0.57
18 9 0.26
19 4 0.11
20 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (17 bp):
AATAAATAAATAAGAAA
Found at i:23099163 original size:26 final size:27
Alignment explanation
Indices: 23099134--23099213 Score: 83
Period size: 31 Copynumber: 2.9 Consensus size: 27
23099124 GAATTTAATA
23099134 AAAATATATTTTTTA-TTTTTATTTTT
1 AAAATATATTTTTTAGTTTTTATTTTT
* *
23099160 AAAATACTTTTATTTTTATTTGTTTATTTTT
1 AAAATA--TAT-TTTTTAGTT-TTTATTTTT
*
23099191 AAAAT-TATTTTTTAGTGTTTATT
1 AAAATATATTTTTTAGTTTTTATT
23099214 AAAAAATAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
26 12 0.27
27 7 0.16
28 4 0.09
29 6 0.13
30 2 0.04
31 14 0.31
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (27 bp):
AAAATATATTTTTTAGTTTTTATTTTT
Found at i:23104371 original size:16 final size:16
Alignment explanation
Indices: 23104347--23104384 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
23104337 TTTGGTTCGC
* *
23104347 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
23104363 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
23104379 TGTAAT
1 TGTAAT
23104385 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:23104427 original size:45 final size:44
Alignment explanation
Indices: 23104363--23104453 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 44
23104353 GGATTAGAGG
23104363 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAG-AAATCAACTGTTTGGTTGAA
* ***
23104408 TGTAATGGAATAGAGGTGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGAAATCAACTGTTTGGTTGAA
23104452 TG
1 TG
23104454 GAATAGAGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 18 0.43
45 24 0.57
ACGTcount: A:0.32, C:0.04, G:0.29, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGTGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:23104465 original size:39 final size:43
Alignment explanation
Indices: 23104363--23104469 Score: 132
Period size: 45 Copynumber: 2.5 Consensus size: 43
23104353 GGATTAGAGG
23104363 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* ***
23104408 TGTAATGGAATAGAGGTGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
23104448 TG-AATGGAATAGAGGTGTAATA
1 TGTAATGGAATAGAGGTGTAATA
23104470 ACATAATGGA
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
39 20 0.34
40 2 0.03
43 1 0.02
44 11 0.19
45 24 0.41
ACGTcount: A:0.34, C:0.04, G:0.29, T:0.34
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:23104635 original size:16 final size:16
Alignment explanation
Indices: 23104598--23104639 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23104588 TTAATCATAT
*
23104598 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
23104614 TT-AAATATATTATAA
1 TTAAAATATATTATAA
23104629 TTAAAATATAT
1 TTAAAATATAT
23104640 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:23104646 original size:14 final size:15
Alignment explanation
Indices: 23104607--23104648 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23104597 TTTAAACATA
*
23104607 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23104622 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23104636 A-TATAATTTAATA
1 ATTATAATTAAATA
23104649 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23104718 original size:157 final size:157
Alignment explanation
Indices: 23104505--23104821 Score: 598
Period size: 157 Copynumber: 2.0 Consensus size: 157
23104495 TAGAATACTC
*
23104505 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTCTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTCTTATTTAAATTTTAATAAGATTATTA
*
23104570 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
23104635 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
* *
23104662 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTCTTATTTAAATTTTAATAAGATTATTA
23104727 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
23104792 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
23104819 TTA
1 TTA
23104822 ATATTCTTAT
Statistics
Matches: 156, Mismatches: 4, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
157 156 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTCTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:23104792 original size:16 final size:16
Alignment explanation
Indices: 23104755--23104796 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23104745 TTAATCATAT
*
23104755 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
23104771 TT-AAATATATTATAA
1 TTAAAATATATTATAA
23104786 TTAAAATATAT
1 TTAAAATATAT
23104797 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:23104803 original size:14 final size:15
Alignment explanation
Indices: 23104764--23104805 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
23104754 TTTAAACATA
*
23104764 ATTATTATTAAATAT
1 ATTATAATTAAATAT
23104779 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
23104793 A-TATAATTTAATA
1 ATTATAATTAAATA
23104806 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:23104906 original size:157 final size:151
Alignment explanation
Indices: 23104575--23104902 Score: 329
Period size: 157 Copynumber: 2.1 Consensus size: 151
23104565 TATTATTATC
*
23104575 AATAATAAATA-ATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATA
1 AATATTAAATATATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATA
* * * * ** * * * * *
23104639 TAATTTAATAAAATTCTTAATAATTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTA
66 TAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATTAATATTGATACTATAA
* * * * *
23104704 TTTAAATTTTAATAAGATTATT
131 ATGAAAATTT-AGAAGATAATT
*
23104726 AATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAA
1 AATAT---TAA-ATAT-ATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAA
* **
23104791 ATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATAT
61 ATATATAATTTAATAAAATTCTTAATAATTAACA--CAAATATG-ATTTACT-AAAT--TAATAT
23104856 ATGATACTATAAATGAAAATTT-GAA-ATAATT
120 -TGATACTATAAATGAAAATTTAGAAGATAATT
23104887 AATATTAAATATATTT
1 AATATTAAATATATTT
23104903 TAATTAAAAT
Statistics
Matches: 142, Mismatches: 22, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
151 4 0.03
154 3 0.02
155 2 0.01
156 4 0.03
157 83 0.58
158 3 0.02
159 4 0.03
160 4 0.03
161 14 0.10
162 2 0.01
163 5 0.04
164 14 0.10
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.45
Consensus pattern (151 bp):
AATATTAAATATATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATA
TAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATTAATATTGATACTATAA
ATGAAAATTTAGAAGATAATT
Found at i:23105017 original size:24 final size:25
Alignment explanation
Indices: 23104971--23105018 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
23104961 TATGAATTTG
23104971 TATAATTTAAAATAATAATTATTACA
1 TATAATTTAAAAT-ATAATTATTACA
23104997 TATAATTTAATAAT-TAA-TATTA
1 TATAATTTAA-AATATAATTATTA
23105019 AATTTCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.24
25 3 0.14
26 10 0.48
27 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TATAATTTAAAATATAATTATTACA
Found at i:23105022 original size:92 final size:92
Alignment explanation
Indices: 23104926--23105154 Score: 236
Period size: 92 Copynumber: 2.5 Consensus size: 92
23104916 TGATTTAATA
* * *
23104926 AAATTT-AAAATAATT-ATAACTAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TA
1 AAATTTCAAAA-AATTCATAA-TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTA
*
23104988 ATTATTACATATAATTTAATAATTAATATT
64 A-TATTAAATATAATTTAATAATTAATATT
* * * * *
23105018 AAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAAT
1 AAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
* *
23105083 ATTAAATATAATTTAAT-AGTGATA-T
66 ATTAAATATAATTTAATAATTAATATT
* * *
23105108 ATAATTTCATAAAATTCTTAATAATAAAATGT-TCTTATATGAATTTA
1 A-AATTTCAAAAAATTCATAATAAT-AAAT-TATATTATATGAATTTA
23105155 CTAAAATCAA
Statistics
Matches: 119, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
90 2 0.02
91 27 0.23
92 81 0.68
93 9 0.08
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (92 bp):
AAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
ATTAAATATAATTTAATAATTAATATT
Found at i:23109481 original size:52 final size:52
Alignment explanation
Indices: 23109424--23110073 Score: 1106
Period size: 52 Copynumber: 12.3 Consensus size: 52
23109414 GGTGTTAATT
23109424 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
23109476 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
23109528 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
23109580 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
23109632 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
* ** * *
23109684 CATTTCAAACATTTATCAGTGAGCAAACATTTCAAAGCATTCAA-AGT-TGAAGTAGTAACAACA
1 CATTTCAAACA-TT-TC----A--AAGCA-TTCAAAG--TT-AACAGTACCAA--ATTAACAGCA
23109747 C
52 C
*
23109748 TATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
23109800 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
23109852 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
23109904 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
23109956 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
23110008 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
1 CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
23110060 CATTTCAAACATTT
1 CATTTCAAACATTT
23110074 ATCAGTGAGC
Statistics
Matches: 570, Mismatches: 12, Indels: 32
0.93 0.02 0.05
Matches are distributed among these distances:
52 503 0.88
53 7 0.01
54 4 0.01
55 7 0.01
56 4 0.01
58 2 0.00
60 4 0.01
61 7 0.01
62 4 0.01
63 7 0.01
64 21 0.04
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.26
Consensus pattern (52 bp):
CATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCAC
Found at i:23110014 original size:324 final size:324
Alignment explanation
Indices: 23109425--23110021 Score: 1194
Period size: 324 Copynumber: 1.8 Consensus size: 324
23109415 GTGTTAATTC
23109425 ATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTT
1 ATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTT
23109490 CAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAA
66 CAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAA
23109555 GTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCA
131 GTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCA
23109620 AATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACC
196 AATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACC
23109685 ATTTCAAACATTTATCAGTGAGCAAACATTTCAAAGCATTCAAAGTTGAAGTAGTAACAACACT
261 ATTTCAAACATTTATCAGTGAGCAAACATTTCAAAGCATTCAAAGTTGAAGTAGTAACAACACT
23109749 ATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTT
1 ATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTT
23109814 CAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAA
66 CAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAA
23109879 GTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCA
131 GTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCA
23109944 AATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACC
196 AATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACC
23110009 ATTTCAAACATTT
261 ATTTCAAACATTT
23110022 CAAAGCATTC
Statistics
Matches: 273, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
324 273 1.00
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.26
Consensus pattern (324 bp):
ATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTT
CAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAA
GTTAACAGTACCAAATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCA
AATTAACAGCACCATTTCAAACATTTCAAAGCATTCAAAGTTAACAGTACCAAATTAACAGCACC
ATTTCAAACATTTATCAGTGAGCAAACATTTCAAAGCATTCAAAGTTGAAGTAGTAACAACACT
Found at i:23115498 original size:14 final size:15
Alignment explanation
Indices: 23115469--23115500 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
23115459 AAAAAAATCA
23115469 TAATTTTATCTATTT
1 TAATTTTATCTATTT
23115484 TAATTTTAT-TATTT
1 TAATTTTATCTATTT
23115498 TAA
1 TAA
23115501 CTATAACCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTATCTATTT
Found at i:23116213 original size:26 final size:27
Alignment explanation
Indices: 23116183--23116246 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
23116173 TTTAAATCAC
* *
23116183 TTTTCAAAAGTACTTCTCAAAAATA-T
1 TTTTCAAAAGCACTTCTCAAAAACACT
* * *
23116209 TTTTCCACAGCACTTTTCAAAAACACT
1 TTTTCAAAAGCACTTCTCAAAAACACT
23116236 TTTT-AAAAGCA
1 TTTTCAAAAGCA
23116247 ATGAAGATCT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.36
Consensus pattern (27 bp):
TTTTCAAAAGCACTTCTCAAAAACACT
Found at i:23124795 original size:19 final size:19
Alignment explanation
Indices: 23124771--23124821 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
23124761 AGCTTGGCTC
*
23124771 AATAATTAATTTTAAGGTT
1 AATAATTAATTTTAAGGGT
*
23124790 AATAA-TATATATTAAGGGT
1 AATAATTA-ATTTTAAGGGT
23124809 AATAATGTAATTT
1 AATAAT-TAATTT
23124822 AATAATATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 2 0.08
19 19 0.73
20 3 0.12
21 2 0.08
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (19 bp):
AATAATTAATTTTAAGGGT
Found at i:23125229 original size:23 final size:21
Alignment explanation
Indices: 23125175--23125230 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 21
23125165 AAAAATTCTG
23125175 AAATTTTATAA-TATATAAATA
1 AAATTTTA-AATTATATAAATA
**
23125196 AAATTAAAAATTATATAAAATTA
1 AAATTTTAAATTATAT-AAA-TA
23125219 AAATTTTAAATT
1 AAATTTTAAATT
23125231 TTACTTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 2 0.07
21 11 0.39
22 3 0.11
23 12 0.43
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AAATTTTAAATTATATAAATA
Found at i:23132928 original size:42 final size:42
Alignment explanation
Indices: 23132881--23132964 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
23132871 CAACTCAGAA
23132881 GAGCGGTAG-TGCAGTTTTTATATGAATTCACTATGTTTATGT
1 GAGCGGTAGAT-CAGTTTTTATATGAATTCACTATGTTTATGT
23132923 GAGCGGTAGATCAGTTTTTATATGAATTCACTATGTTTATGT
1 GAGCGGTAGATCAGTTTTTATATGAATTCACTATGTTTATGT
23132965 AAATTTACCC
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
42 40 0.98
43 1 0.02
ACGTcount: A:0.25, C:0.10, G:0.23, T:0.43
Consensus pattern (42 bp):
GAGCGGTAGATCAGTTTTTATATGAATTCACTATGTTTATGT
Found at i:23134565 original size:16 final size:16
Alignment explanation
Indices: 23134544--23134577 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
23134534 CTTCAACCTC
*
23134544 TCATTTCCTTCTCATT
1 TCATTTCCTCCTCATT
23134560 TCATTTCCTCCTCATT
1 TCATTTCCTCCTCATT
23134576 TC
1 TC
23134578 CTCTCCGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.00, T:0.53
Consensus pattern (16 bp):
TCATTTCCTCCTCATT
Found at i:23135474 original size:13 final size:11
Alignment explanation
Indices: 23135446--23135479 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
23135436 ATTTTTTTCT
23135446 CATATATTGTA
1 CATATATTGTA
23135457 CATATATTGTA
1 CATATATTGTA
23135468 CATATATTGTA
1 CATATATTGTA
23135479 C
1 C
23135480 TAATTCCTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (11 bp):
CATATATTGTA
Found at i:23136713 original size:20 final size:20
Alignment explanation
Indices: 23136688--23136727 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
23136678 AATATTTTCC
* *
23136688 AGTAAATCATTTTACAGAAA
1 AGTAAAACACTTTACAGAAA
*
23136708 AGTAAAACACTTTCCAGAAA
1 AGTAAAACACTTTACAGAAA
23136728 TCATTTTACG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.15, G:0.10, T:0.25
Consensus pattern (20 bp):
AGTAAAACACTTTACAGAAA
Found at i:23138288 original size:42 final size:43
Alignment explanation
Indices: 23138221--23138302 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 43
23138211 CCGAATATAA
*
23138221 TAAATATATTTTTTATTTTTA-TTTTTTAATTTTAAAATACTT
1 TAAAAATATTTTTTATTTTTATTTTTTTAATTTTAAAATACTT
*
23138263 TAAAAATA-TTTTTATTTTTATTTTTTTTATTTTTAAAATA
1 TAAAAATATTTTTTATTTTTA-TTTTTTTAATTTTAAAATA
23138303 TTATTTTTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
41 12 0.33
42 7 0.19
43 17 0.47
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (43 bp):
TAAAAATATTTTTTATTTTTATTTTTTTAATTTTAAAATACTT
Found at i:23138322 original size:24 final size:23
Alignment explanation
Indices: 23138280--23138324 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
23138270 ATTTTTATTT
*
23138280 TTATTTTTTTTATTTTTAAAATA
1 TTATTTTTTGTATTTTTAAAATA
*
23138303 TTATTTTTTGTGTTTATTAAAA
1 TTATTTTTTGTATTT-TTAAAA
23138325 ATCGGGCCGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (23 bp):
TTATTTTTTGTATTTTTAAAATA
Found at i:23139929 original size:14 final size:14
Alignment explanation
Indices: 23139910--23139951 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
23139900 ATATCAAGTA
*
23139910 AAATTATTATTTTT
1 AAATTATTATTATT
23139924 AAATTATTATTATT
1 AAATTATTATTATT
*
23139938 -AATTACTATTATT
1 AAATTATTATTATT
23139951 A
1 A
23139952 TCCAAACTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 12 0.48
14 13 0.52
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (14 bp):
AAATTATTATTATT
Found at i:23139947 original size:13 final size:13
Alignment explanation
Indices: 23139911--23139951 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
23139901 TATCAAGTAA
*
23139911 AATTATTATTTTT
1 AATTATTATTATT
23139924 AAATTATTATTATT
1 -AATTATTATTATT
*
23139938 AATTACTATTATT
1 AATTATTATTATT
23139951 A
1 A
23139952 TCCAAACTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (13 bp):
AATTATTATTATT
Found at i:23149971 original size:18 final size:18
Alignment explanation
Indices: 23149948--23149993 Score: 57
Period size: 13 Copynumber: 2.8 Consensus size: 18
23149938 ACATAGTTAT
23149948 TTGAAACTCAAATAATAC
1 TTGAAACTCAAATAATAC
23149966 TTG--A---AAATAATAC
1 TTGAAACTCAAATAATAC
23149979 TTGAAACTCAAATAA
1 TTGAAACTCAAATAA
23149994 CTATGGACTC
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
13 12 0.52
15 1 0.04
16 1 0.04
18 9 0.39
ACGTcount: A:0.52, C:0.13, G:0.07, T:0.28
Consensus pattern (18 bp):
TTGAAACTCAAATAATAC
Found at i:23150005 original size:16 final size:16
Alignment explanation
Indices: 23149984--23150014 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
23149974 AATACTTGAA
23149984 ACTCAAATAACTATGG
1 ACTCAAATAACTATGG
23150000 ACTCAAATAACTATG
1 ACTCAAATAACTATG
23150015 TAAAAAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (16 bp):
ACTCAAATAACTATGG
Found at i:23151651 original size:46 final size:43
Alignment explanation
Indices: 23151578--23151662 Score: 107
Period size: 46 Copynumber: 1.9 Consensus size: 43
23151568 TACTATGTGA
*
23151578 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTGATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGATCCC
* * *
23151621 ACCGGATATCATTGATTACAAAGGGTGGTTGTTGTGTGCTGA
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGA
23151663 ATCCATCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
43 5 0.14
44 11 0.31
45 2 0.06
46 17 0.49
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGATCCC
Found at i:23154325 original size:44 final size:44
Alignment explanation
Indices: 23154262--23154349 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
23154252 AAAGTTCTCT
23154262 AGGCATTTCTTCTTCAATTTTTAGCCAAAACTGACATAGGGAAA
1 AGGCATTTCTTCTTCAATTTTTAGCCAAAACTGACATAGGGAAA
* *
23154306 AGGCATTTCTTCTTCAATTTTTGGCCTAAACTGACATAGGGAAA
1 AGGCATTTCTTCTTCAATTTTTAGCCAAAACTGACATAGGGAAA
23154350 GGGCTTTAAG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (44 bp):
AGGCATTTCTTCTTCAATTTTTAGCCAAAACTGACATAGGGAAA
Found at i:23159480 original size:18 final size:19
Alignment explanation
Indices: 23159457--23159494 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
23159447 ATTAGGTGTA
*
23159457 TCAGCTTT-TAGCTTCTGT
1 TCAGCTTTCGAGCTTCTGT
23159475 TCAGCTTTCGAGCTTCTGT
1 TCAGCTTTCGAGCTTCTGT
23159494 T
1 T
23159495 GGCATATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.11, C:0.24, G:0.18, T:0.47
Consensus pattern (19 bp):
TCAGCTTTCGAGCTTCTGT
Found at i:23159706 original size:21 final size:21
Alignment explanation
Indices: 23159669--23159718 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
23159659 AATAGAAGTT
* *
23159669 GTGAATGACAGGAAATTGATA
1 GTGAATGATAGGAAATTGACA
23159690 GTGAATGATA-GAGAATTGACA
1 GTGAATGATAGGA-AATTGACA
23159711 -TGAATGAT
1 GTGAATGAT
23159719 TTTATTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.42, C:0.04, G:0.28, T:0.26
Consensus pattern (21 bp):
GTGAATGATAGGAAATTGACA
Found at i:23161203 original size:13 final size:14
Alignment explanation
Indices: 23161185--23161213 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
23161175 AAGGGTTTTG
23161185 AAATTGG-AAGTTT
1 AAATTGGTAAGTTT
23161198 AAATTGGTAAGTTT
1 AAATTGGTAAGTTT
23161212 AA
1 AA
23161214 TTTAGTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (14 bp):
AAATTGGTAAGTTT
Found at i:23161903 original size:12 final size:14
Alignment explanation
Indices: 23161885--23161920 Score: 58
Period size: 12 Copynumber: 2.7 Consensus size: 14
23161875 TCGTAAAAAA
23161885 ATGATAAATTG-AT
1 ATGATAAATTGAAT
23161898 -TGATAAATTGAAT
1 ATGATAAATTGAAT
23161911 ATGATAAATT
1 ATGATAAATT
23161921 ACAATTTGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 10 0.48
13 2 0.10
14 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.39
Consensus pattern (14 bp):
ATGATAAATTGAAT
Found at i:23164397 original size:10 final size:10
Alignment explanation
Indices: 23164382--23164413 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
23164372 ATATATATAG
23164382 AAATAAATAA
1 AAATAAATAA
23164392 AAATAAATAA
1 AAATAAATAA
23164402 AAATAAATAA
1 AAATAAATAA
23164412 AA
1 AA
23164414 TATGTTAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (10 bp):
AAATAAATAA
Found at i:23173621 original size:13 final size:14
Alignment explanation
Indices: 23173605--23173637 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
23173595 CTAAAGTTAA
23173605 TATTATT-TATATT
1 TATTATTATATATT
23173618 TATT-TTATATATT
1 TATTATTATATATT
23173631 TATTATT
1 TATTATT
23173638 CTCTTTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 2 0.11
13 14 0.78
14 2 0.11
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TATTATTATATATT
Found at i:23181543 original size:19 final size:22
Alignment explanation
Indices: 23181507--23181546 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
23181497 CCTTTTTTAA
23181507 AATCGTAAATAAGTAAAAAAAT
1 AATCGTAAATAAGTAAAAAAAT
23181529 AATCG-AAA-AAG-AAAAAAA
1 AATCGTAAATAAGTAAAAAAA
23181547 CAGTAAGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 3 0.17
21 3 0.17
22 5 0.28
ACGTcount: A:0.70, C:0.05, G:0.10, T:0.15
Consensus pattern (22 bp):
AATCGTAAATAAGTAAAAAAAT
Found at i:23181753 original size:23 final size:22
Alignment explanation
Indices: 23181721--23181765 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
23181711 AAATAAAATC
23181721 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
* *
23181744 TCTAATATTACATATCATATCT
1 TCTAAGATTACAAATCATATCT
23181766 AAGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.40, C:0.18, G:0.02, T:0.40
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:23181776 original size:19 final size:19
Alignment explanation
Indices: 23181744--23181818 Score: 105
Period size: 19 Copynumber: 3.8 Consensus size: 19
23181734 AATCATATCT
* *
23181744 TCTAATATTACATATCATA
1 TCTAAGATTGCATATCATA
23181763 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
*
23181784 TCTAAGAATGCATATCATA
1 TCTAAGATTGCATATCATA
23181803 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
23181819 CTCGAAGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 32 0.64
21 18 0.36
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:23181781 original size:21 final size:21
Alignment explanation
Indices: 23181755--23181817 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
23181745 CTAATATTAC
23181755 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
*
23181776 ATATCATATCTAAGAATGC--
1 ATATCATATCTAAGATTGCAT
23181795 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
23181816 AT
1 AT
23181818 CCTCGAAGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.47
21 20 0.53
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.37
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Done.