Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 73 of 153
Found at i:23182495 original size:217 final size:216
Alignment explanation
Indices: 23182208--23182673 Score: 618
Period size: 217 Copynumber: 2.2 Consensus size: 216
23182198 CTTGCTTTCT
* * *
23182208 TGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGATGTGATCTACTCTACTGCAACTTCA
1 TGAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATCTACTCTACTGCAACTTCA
* ** * *
23182273 GAGAGATAAGAACTATGGTTTTAATCCGTTCCACTGCAACTTCAGGGAGACAGGATT-T-GTTTA
66 GAGAGATAAGAACTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGACAGGATTATCG--GA
** *
23182336 TTTAGTATGCCCCACTACAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAA
129 TTTAACATGCCCCACTACAACTTCAAGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAA
*
23182401 CTTCAAGAGGATAAAACTTGATTAC
194 CTTCAAGAAGATAAAACTTGA-T-C
* * *
23182426 TTAGTCTGCTCCACTGCAACTTCAGAGAGATAATACTAGATGCGATCTGCTCT-CTGCAACTTCA
1 TGAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATCTACTCTACTGCAACTTCA
* * *
23182490 GAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTT
66 GAGAGATAAGAACTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGACAGGATTATCGGATT
* * * * *
23182555 TAACCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACT
131 TAACATGCCCCACTACAACTTCAAGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAACT
* *
23182620 TCAAGAAGATAAGACTTGATG
196 TCAAGAAGATAAAACTTGATC
* *
23182641 TGA-TTTGCT-CTCTGCAACTTCAGAGAGATAAGA
1 TGAGTCTGCTCCACTGCAACTTCAGAGAGATAAGA
23182674 TTCAAGGTTT
Statistics
Matches: 217, Mismatches: 29, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
213 22 0.10
214 5 0.02
215 2 0.01
216 1 0.00
217 138 0.64
218 48 0.22
219 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (216 bp):
TGAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATCTACTCTACTGCAACTTCA
GAGAGATAAGAACTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGACAGGATTATCGGATT
TAACATGCCCCACTACAACTTCAAGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTACAACT
TCAAGAAGATAAAACTTGATC
Found at i:23182535 original size:173 final size:170
Alignment explanation
Indices: 23182347--23182758 Score: 482
Period size: 173 Copynumber: 2.4 Consensus size: 170
23182337 TTAGTATGCC
* * * **
23182347 CCACTACAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGC-CTCACTACAACTTCAA-GAG
1 CCACTGCAACTTCAGGAAGATAGGATTCGCC-T-TT-AACCTGCTC-CACTACAACTTCAAGGA-
*
23182410 GATAAAACTTG-ATTACTT-AGTCTG-CTCCACTGCAACTTC-AGAGAGATAATACTAGATGCGA
61 GATAAAACTTGCA-T-CTTCAGTCTGCCT-CACTGCAACTTCAAGA-AGATAAGACTAGATGCGA
23182471 TCTGCTCTCTGCAACTTCAGAGAGATAAGA-TCTAAGGTTTTAATCCACT
122 TCTGCTCTCTGCAACTTCAGAGAGATAAGATTC-AAGGTTTTAATCCACT
* *
23182520 CCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAACCTGCTCCACTGCAACTTCAAGGAGAT
1 CCACTGCAACTTCAGGAAGATAGGA-T-TCGCCTTTAACCTGCTCCACTACAACTTCAAGGAGAT
* * * * *
23182585 AAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAAGAAGATAAGACTTGATGTGATTTGCT
64 AAAACTTG-CATCTTCAGTCTGCCTCACTGCAACTTCAAGAAGATAAGACTAGATGCGATCTGCT
23182650 CTCTGCAACTTCAGAGAGATAAGATTCAAGGTTTTAATCCACT
128 CTCTGCAACTTCAGAGAGATAAGATTCAAGGTTTTAATCCACT
* *
23182693 CCACTGCAACTTCAGGAAGATAGGATTATCTG-C-TTAACCTGCTCCACTGCAACTTCAGGGAGA
1 CCACTGCAACTTCAGGAAGATAGGA-T-TC-GCCTTTAACCTGCTCCACTACAACTTCAAGGAGA
23182756 TAA
63 TAA
23182759 GACTAGATAC
Statistics
Matches: 214, Mismatches: 14, Indels: 23
0.85 0.06 0.09
Matches are distributed among these distances:
172 62 0.29
173 137 0.64
174 11 0.05
175 4 0.02
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (170 bp):
CCACTGCAACTTCAGGAAGATAGGATTCGCCTTTAACCTGCTCCACTACAACTTCAAGGAGATAA
AACTTGCATCTTCAGTCTGCCTCACTGCAACTTCAAGAAGATAAGACTAGATGCGATCTGCTCTC
TGCAACTTCAGAGAGATAAGATTCAAGGTTTTAATCCACT
Found at i:23182831 original size:44 final size:43
Alignment explanation
Indices: 23182430--23182844 Score: 189
Period size: 44 Copynumber: 9.7 Consensus size: 43
23182420 GATTACTTAG
* * * ***
23182430 TCTGCTCCACTGCAACTTCAGAGAGATAATA-C-TAGATGCGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCAAAGTTTTAA
* *
23182471 TCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATC-AAAGTTTTAA
** * * ** *
23182514 TCCACTCCACTGCAACTTCAG-GAAGATAGGATTATCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGAG-AGATAAGATCA-AAGTTTTAA
* * * *
23182558 CCTGCTCCACTGCAACTTCA-AGGAGATAAGATTTGC-CA-TCTTCAG
1 TCTGCTCCACTGCAACTTCAGA-GAGATAAGA--T-CAAAGT-TTTAA
** * * *
23182603 TCTGC-CTCACTGCAACTTCA-AGAAGATAAGA-C-TTGATGTGA
1 TCTGCTC-CACTGCAACTTCAGAG-AGATAAGATCAAAGTTTTAA
* * *
23182644 TTTGCT-CTCTGCAACTTCAGAGAGATAAGATTCAAGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGA-TCAAAGTTTTAA
** * * ** *
23182687 TCCACTCCACTGCAACTTCAG-GAAGATAGGAT-TATCTGCTTAA
1 TCTGCTCCACTGCAACTTCAGAG-AGATAAGATCAAAGT-TTTAA
* * * * ***
23182730 CCTGCTCCACTGCAACTTCAGGGAGATAAGA-C-TAGATACGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGATCAAAGTTTTAA
*
23182771 TCTGCT-CTCTGCAACTTCAGAGAGATAAGATCCAAAGTTTTAA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGAT-CAAAGTTTTAA
* *
23182814 TATGCTCCACTGCAACTTCAGAGAGACAAGA
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGA
23182845 CTTGGTGGCT
Statistics
Matches: 274, Mismatches: 71, Indels: 55
0.69 0.18 0.14
Matches are distributed among these distances:
40 64 0.23
41 21 0.08
42 4 0.01
43 56 0.20
44 97 0.35
45 31 0.11
46 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (43 bp):
TCTGCTCCACTGCAACTTCAGAGAGATAAGATCAAAGTTTTAA
Found at i:23182932 original size:132 final size:132
Alignment explanation
Indices: 23182792--23183086 Score: 371
Period size: 132 Copynumber: 2.2 Consensus size: 132
23182782 CAACTTCAGA
* * *
23182792 GAGATAAGATCCA-AAGT-TTTAATATGCTCCACTGCAACTTCAGAGAGACAA-GACTTGGTGGC
1 GAGATAAGATCCACAA-TCTTCAACATACTCCACTGCAAC-TCAGAGAGACAATG-CTTGGTGGC
* * ** *
23182854 TTAAATCTGCTTCCCACTATCTTGGAAAGATATGATTTGTCGTTTTCGATCTGCTCCACTACTGC
63 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCCTCGATCTACTCCACTACTGC
23182919 TTAGG
128 TTAGG
* * * ** *
23182924 GAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAGACAATGCTTGGTGGCTTA
1 GAGATAAGATCCACAATCTTCAACATACTCCACTGCAACTCAGAGAGACAATGCTTGGTGGCTTA
*
23182989 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCCTCGATCTACTCCACTATTGCTTA
66 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCCTCGATCTACTCCACTACTGCTTA
23183054 GG
131 GG
* * * *
23183056 GAGATAAGATCTACGATCCTCAACCTACTCC
1 GAGATAAGATCCACAATCTTCAACATACTCC
23183087 GCTGTTGCTC
Statistics
Matches: 143, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
132 126 0.88
133 17 0.12
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (132 bp):
GAGATAAGATCCACAATCTTCAACATACTCCACTGCAACTCAGAGAGACAATGCTTGGTGGCTTA
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCCTCGATCTACTCCACTACTGCTTA
GG
Found at i:23183087 original size:132 final size:131
Alignment explanation
Indices: 23182831--23183107 Score: 446
Period size: 132 Copynumber: 2.1 Consensus size: 131
23182821 CACTGCAACT
* * *
23182831 TCAGAGAGACAAGACTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATATGATTTGTCG
1 TCAGGGAGACAAG-CTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
** * *
23182896 TTTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCT
65 TCCTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCCTCAACCTACTCCGCTGCT
23182961 GC
130 GC
23182963 TCAGGGAGACAATGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
1 TCAGGGAGACAA-GCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
* * *
23183028 TCCTCGATCTACTCCACTATTGCTTAGGGAGATAAGATCTACGATCCTCAACCTACTCCGCTGTT
65 TCCTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCCTCAACCTACTCCGCTGCT
23183093 GC
130 GC
23183095 TCAGGGAGACAAG
1 TCAGGGAGACAAG
23183108 GCTTAGTGTT
Statistics
Matches: 134, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
131 1 0.01
132 132 0.99
133 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (131 bp):
TCAGGGAGACAAGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGT
CCTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCCTCAACCTACTCCGCTGCTG
C
Found at i:23184399 original size:22 final size:21
Alignment explanation
Indices: 23184361--23184419 Score: 77
Period size: 22 Copynumber: 2.9 Consensus size: 21
23184351 CACTTTGGCC
*
23184361 TTTCTATTTTC-C-TTTTCTT
1 TTTCTTTTTTCACTTTTTCTT
23184380 TTTCTTTTTATCACTTTTTCTT
1 TTTCTTTTT-TCACTTTTTCTT
*
23184402 TTTCTTTTTTCTCTTTTT
1 TTTCTTTTTTCACTTTTT
23184420 TTATAATTTG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.23
20 2 0.06
21 9 0.26
22 16 0.46
ACGTcount: A:0.05, C:0.19, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTCTTTTTTCACTTTTTCTT
Found at i:23184420 original size:22 final size:22
Alignment explanation
Indices: 23184373--23184419 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
23184363 TCTATTTTCC
23184373 TTTTCTTTTTCTTTTTATCACT
1 TTTTCTTTTTCTTTTTATCACT
*
23184395 TTTTCTTTTTCTTTTT-TCTCT
1 TTTTCTTTTTCTTTTTATCACT
23184416 TTTT
1 TTTT
23184420 TTATAATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTTCTTTTTCTTTTTATCACT
Found at i:23199521 original size:21 final size:21
Alignment explanation
Indices: 23199496--23199540 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
23199486 ATTGTTTGAT
23199496 TCATCGTCATCGTCACCATCA
1 TCATCGTCATCGTCACCATCA
* **
23199517 TCATCGTCGTCGTCGTCATCA
1 TCATCGTCATCGTCACCATCA
23199538 TCA
1 TCA
23199541 CTTTCTCGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.36, G:0.13, T:0.31
Consensus pattern (21 bp):
TCATCGTCATCGTCACCATCA
Found at i:23201047 original size:72 final size:71
Alignment explanation
Indices: 23200898--23201088 Score: 251
Period size: 72 Copynumber: 2.7 Consensus size: 71
23200888 TCACTTGTAA
** * * **
23200898 ATAAATTTTATATCC-AAAATCATAA-ATAAACAACTATTGATAAAACTAATTTAGTATAAATAA
1 ATAAATTCAATATCCAAAAACCA-AACATAAACAACTATTGATAAAACTAAATTAACATAAATAA
23200961 GTAGAAC
65 GTAGAAC
* * *
23200968 ATAAATTCAATATCCAAAGACTAAACATAAACAACTATTAATAAAACTAAATTACACATAAATAA
1 ATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAAATTA-ACATAAATAA
23201033 GTAGAAC
65 GTAGAAC
* *
23201040 ATAAATTCAATGTCCAAAAACCAAACATAAATAACTATTGATAAAACTA
1 ATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTA
23201089 GTTTAGCATT
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
70 15 0.14
71 30 0.29
72 59 0.57
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.27
Consensus pattern (71 bp):
ATAAATTCAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAAATTAACATAAATAAG
TAGAAC
Found at i:23201552 original size:18 final size:18
Alignment explanation
Indices: 23201519--23201565 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
23201509 CCATCAATTC
* *
23201519 GAACATAATTTGAAATGT
1 GAACATCATTTAAAATGT
*
23201537 GAATATCATTTAAAATGT
1 GAACATCATTTAAAATGT
23201555 GAACATCATTT
1 GAACATCATTT
23201566 CTCATATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.36
Consensus pattern (18 bp):
GAACATCATTTAAAATGT
Found at i:23203722 original size:110 final size:115
Alignment explanation
Indices: 23203536--23203749 Score: 289
Period size: 110 Copynumber: 1.9 Consensus size: 115
23203526 TCAAAACCTT
* *
23203536 AAATTTATTTCCAATTTTGCATAAAAAAATTCATATTTTTTTCAAGGACAAAACACATGAAACAC
1 AAATTTATTCCCAATTTTGCATAAAAAAATTCAGATTTTTTTCAAGGACAAAACACATGAAACAC
23203601 GAAATATAGCTAAA-TAAAACG-ACCCCAGAAGCTTACATTTCAATGCCTCC
66 GAAATATAGCTAAATTAAAA-GAACCCCA-AAGCTTACATTTCAATGCCTCC
** * * *
23203651 AAATTTA-TCCCAATTTTGCAT-CGAAAATTC-GATTTTTTT-AAGGATAAAACA-ATGAAATAT
1 AAATTTATTCCCAATTTTGCATAAAAAAATTCAGATTTTTTTCAAGGACAAAACACATGAAACAC
*
23203711 GAAATATAGCTAAATTAAAAGAACCCCAAAGTTTACATT
66 GAAATATAGCTAAATTAAAAGAACCCCAAAGCTTACATT
23203750 ACAGCAAAAA
Statistics
Matches: 89, Mismatches: 8, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
110 32 0.36
111 22 0.25
112 8 0.09
113 7 0.08
114 13 0.15
115 7 0.08
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.30
Consensus pattern (115 bp):
AAATTTATTCCCAATTTTGCATAAAAAAATTCAGATTTTTTTCAAGGACAAAACACATGAAACAC
GAAATATAGCTAAATTAAAAGAACCCCAAAGCTTACATTTCAATGCCTCC
Found at i:23206120 original size:28 final size:28
Alignment explanation
Indices: 23206084--23206145 Score: 124
Period size: 28 Copynumber: 2.2 Consensus size: 28
23206074 TAGGCAATCA
23206084 AATTAAATAAGCACAAGAGAGAATAAAT
1 AATTAAATAAGCACAAGAGAGAATAAAT
23206112 AATTAAATAAGCACAAGAGAGAATAAAT
1 AATTAAATAAGCACAAGAGAGAATAAAT
23206140 AATTAA
1 AATTAA
23206146 TAATGATTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.61, C:0.06, G:0.13, T:0.19
Consensus pattern (28 bp):
AATTAAATAAGCACAAGAGAGAATAAAT
Found at i:23206470 original size:41 final size:42
Alignment explanation
Indices: 23206424--23206503 Score: 126
Period size: 41 Copynumber: 1.9 Consensus size: 42
23206414 ACTAGACCCC
*
23206424 TTTAATTATTTTTCCTTTCA-TTTTCCTTGAAAAATTATCCT
1 TTTAATTATTTCTCCTTTCATTTTTCCTTGAAAAATTATCCT
* *
23206465 TTTAATTATTTCTCCTTTCATTTTTTCTTTAAAAATTAT
1 TTTAATTATTTCTCCTTTCATTTTTCCTTGAAAAATTAT
23206504 TCCTGTCACC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 19 0.54
42 16 0.46
ACGTcount: A:0.25, C:0.15, G:0.01, T:0.59
Consensus pattern (42 bp):
TTTAATTATTTCTCCTTTCATTTTTCCTTGAAAAATTATCCT
Found at i:23209439 original size:21 final size:22
Alignment explanation
Indices: 23209413--23209459 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
23209403 CTCTGCTCAA
*
23209413 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
*
23209434 ACTCCATCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
23209456 ACTC
1 ACTC
23209460 ACTCATTCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.23
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:23211723 original size:22 final size:21
Alignment explanation
Indices: 23211693--23211736 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
23211683 ACACCAAAAC
*
23211693 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCG-TTTTTT
*
23211715 AGGCCTTTAGCGGTGTTTTTT
1 AGGCCTTTAGCGGCGTTTTTT
23211736 A
1 A
23211737 ACGCCGCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.11, C:0.16, G:0.27, T:0.45
Consensus pattern (21 bp):
AGGCCTTTAGCGGCGTTTTTT
Found at i:23211882 original size:43 final size:43
Alignment explanation
Indices: 23211829--23212056 Score: 289
Period size: 43 Copynumber: 5.3 Consensus size: 43
23211819 TTTTATAAAT
*
23211829 AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * *
23211872 AAACGCCACTAAAGACCATGACCTTTAACGGTGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
23211915 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * * **
23211958 AAACGCCGCTAAAGACTAAGACCTTTAACGATGCTTTTTCCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGC-TTTTCCCAC
** * ***
23212002 AAACAACGCTATAGA--ATAGACCTTTAGCGGCGCTTTTTAGAC
1 AAACGCCGCTAAAGACCAT-GACCTTTAGCGGCGCTTTTCCCAC
23212044 AAACGCCGCTAAA
1 AAACGCCGCTAAA
23212057 AATATATCTT
Statistics
Matches: 160, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
42 17 0.11
43 122 0.76
44 21 0.13
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:23211935 original size:86 final size:87
Alignment explanation
Indices: 23211829--23212056 Score: 327
Period size: 86 Copynumber: 2.6 Consensus size: 87
23211819 TTTTATAAAT
* * *
23211829 AAACGCCACTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCACTAAAGACCATGAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
*
23211894 CTTTAACGGTGC-TTTTCCCAC
66 CTTTAACGATGCTTTTTCCCAC
*
23211915 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACTAAGAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
23211980 CTTTAACGATGCTTTTTCCCAC
66 CTTTAACGATGCTTTTTCCCAC
** * ***
23212002 AAACAACGCTATAGA--ATAGACCTTTAGCGGCGCTTTTTAGACAAACGCCGCTAAA
1 AAACGCCGCTAAAGACCAT-GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA
23212057 AATATATCTT
Statistics
Matches: 129, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
85 2 0.02
86 106 0.82
87 21 0.16
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (87 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
CTTTAACGATGCTTTTTCCCAC
Found at i:23212375 original size:43 final size:43
Alignment explanation
Indices: 23212327--23212417 Score: 116
Period size: 43 Copynumber: 2.1 Consensus size: 43
23212317 ACATATGCAA
* *
23212327 GGTAATAAAA-TATACAATGCATTTTCTTAATC-AAGTAAATCTT
1 GGTAATAAAAGT-TACAATACATTTACTTAATCAAAG-AAATCTT
*
23212370 GGTAATAAAAGTTATAATACATTTACTTAATCAAAGAAATCTT
1 GGTAATAAAAGTTACAATACATTTACTTAATCAAAGAAATCTT
23212413 -GTAAT
1 GGTAAT
23212418 GAACTCAAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
42 5 0.12
43 34 0.79
44 4 0.09
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (43 bp):
GGTAATAAAAGTTACAATACATTTACTTAATCAAAGAAATCTT
Found at i:23216929 original size:21 final size:20
Alignment explanation
Indices: 23216907--23216976 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 20
23216897 AATCTTTAAA
23216907 CCCTAAATCACTAACTCTTAAC
1 CCCT-AATCACTAACTC-TAAC
* * *
23216929 CTCTAACCACTAACCCCTAAC
1 CCCTAATCACTAA-CTCTAAC
*
23216950 CCCTAATCCCTAACTACTAAC
1 CCCTAATCACTAACT-CTAAC
23216971 CCCTAA
1 CCCTAA
23216977 ATCTTATTTA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
20 1 0.03
21 33 0.85
22 5 0.13
ACGTcount: A:0.34, C:0.43, G:0.00, T:0.23
Consensus pattern (20 bp):
CCCTAATCACTAACTCTAAC
Found at i:23216935 original size:7 final size:7
Alignment explanation
Indices: 23216925--23216976 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
23216915 CACTAACTCT
*
23216925 TAACCTC
1 TAACCCC
*
23216932 TAACCAC
1 TAACCCC
23216939 TAACCCC
1 TAACCCC
23216946 TAACCCC
1 TAACCCC
*
23216953 TAATCCC
1 TAACCCC
**
23216960 TAACTAC
1 TAACCCC
23216967 TAACCCC
1 TAACCCC
23216974 TAA
1 TAA
23216977 ATCTTATTTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.21
Consensus pattern (7 bp):
TAACCCC
Found at i:23216942 original size:14 final size:14
Alignment explanation
Indices: 23216925--23216976 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
23216915 CACTAACTCT
*
23216925 TAACCTCTAACCAC
1 TAACCCCTAACCAC
*
23216939 TAACCCCTAACCCC
1 TAACCCCTAACCAC
* *
23216953 TAATCCCTAACTAC
1 TAACCCCTAACCAC
23216967 TAACCCCTAA
1 TAACCCCTAA
23216977 ATCTTATTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.35, C:0.44, G:0.00, T:0.21
Consensus pattern (14 bp):
TAACCCCTAACCAC
Found at i:23217057 original size:74 final size:74
Alignment explanation
Indices: 23216966--23217104 Score: 210
Period size: 74 Copynumber: 1.9 Consensus size: 74
23216956 TCCCTAACTA
* *
23216966 CTAACCCCTAAATCTTATTTAATATATAAATTA-AA-ACACTAATTAATCTAGACCCTAAACCCT
1 CTAACCCCTAAACCTTA-TTAA-ATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCT
23217029 AACCCAAATCC
64 AACCCAAATCC
* *
23217040 CTAACCCCTACACCTTATTCAATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCTAA
1 CTAACCCCTAAACCTTATTAAATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCTAA
23217105 ACCCTAACAT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
72 10 0.17
73 5 0.08
74 44 0.75
ACGTcount: A:0.43, C:0.28, G:0.01, T:0.27
Consensus pattern (74 bp):
CTAACCCCTAAACCTTATTAAATATAAATTAGAACACACTAATTAATCTAAACCCTAAACCCTAA
CCCAAATCC
Found at i:23217099 original size:7 final size:7
Alignment explanation
Indices: 23217087--23217111 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
23217077 ACTAATTAAT
23217087 CTAAACC
1 CTAAACC
23217094 CTAAACC
1 CTAAACC
23217101 CTAAACC
1 CTAAACC
23217108 CTAA
1 CTAA
23217112 CATGACACTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.40, G:0.00, T:0.16
Consensus pattern (7 bp):
CTAAACC
Found at i:23217695 original size:41 final size:41
Alignment explanation
Indices: 23217650--23217769 Score: 206
Period size: 40 Copynumber: 3.0 Consensus size: 41
23217640 TCAAAAACGG
23217650 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
* *
23217691 GCATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGG-CTGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
*
23217731 GCATTAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCC
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCC
23217770 CCAAAACCTA
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
40 37 0.51
41 36 0.49
ACGTcount: A:0.28, C:0.31, G:0.24, T:0.17
Consensus pattern (41 bp):
GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
Found at i:23217875 original size:39 final size:39
Alignment explanation
Indices: 23217812--23217938 Score: 166
Period size: 40 Copynumber: 3.2 Consensus size: 39
23217802 GGCTTTTTGC
**
23217812 GGCGCTTTTCAAAAAATGCCGCTAATGCTT-ATTTTTAGT
1 GGCG-TTTTCAAAAAGCGCCGCTAATGCTTGATTTTTAGT
** *
23217851 GGCGTTTTCCAAAAAGCGCCGCTAATGCTTGACCTTTAGC
1 GGCGTTTT-CAAAAAGCGCCGCTAATGCTTGATTTTTAGT
*
23217891 GGCGTTTTTATAAAAGCGCCGCTAATGCTTGATTTTTAGT
1 GGCGTTTTCA-AAAAGCGCCGCTAATGCTTGATTTTTAGT
23217931 GGCGTTTT
1 GGCGTTTT
23217939 TGCCCGAGCG
Statistics
Matches: 76, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
38 4 0.05
39 24 0.32
40 48 0.63
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (39 bp):
GGCGTTTTCAAAAAGCGCCGCTAATGCTTGATTTTTAGT
Found at i:23217949 original size:40 final size:39
Alignment explanation
Indices: 23217829--23217955 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
23217819 TTCAAAAAAT
23217829 GCCGCTAATGCTT-ATTTTTAGTGGCG-TTTTCCAAAAAGC
1 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTCC--AAAGC
** * **
23217868 GCCGCTAATGCTTGACCTTTAGCGGCGTTTTTATAAAAGC
1 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTT-CCAAAGC
**
23217908 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTGCCCGAGC
1 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTT-CCAAAGC
23217948 GCCGCTAA
1 GCCGCTAA
23217956 AAACGCCGCT
Statistics
Matches: 72, Mismatches: 13, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
39 13 0.18
40 55 0.76
41 4 0.06
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.34
Consensus pattern (39 bp):
GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTCCAAAGC
Found at i:23228533 original size:27 final size:27
Alignment explanation
Indices: 23228491--23228542 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
23228481 AAATGTGAAA
*
23228491 AGGGGTTGCTATGTGCTGATTCCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCCG
23228518 AGGGGTTGCTAAGTGCTGATTCCCC
1 AGGGGTTGCTAAGTGCTGATTCCCC
23228543 GGTTCATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (27 bp):
AGGGGTTGCTAAGTGCTGATTCCCCCG
Found at i:23228657 original size:103 final size:103
Alignment explanation
Indices: 23228413--23228678 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 103
23228403 GTTGTACATA
** *
23228413 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* *
23228478 TTGAAATGTGAAAAGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAA-GTAAAAAGGGGTTGCTATGTGCTGATTCCCCC
* *
23228517 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
23228582 CTGAAA-TAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAAGTAAAAA-GGGGTTGCTATGTGCTGATTCCCCC
* * *
23228620 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
23228679 AATAACGGTT
Statistics
Matches: 149, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
102 5 0.03
103 79 0.53
104 65 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (103 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAAGTAAAAAGGGGTTGCTATGTGCTGATTCCCCC
Found at i:23231100 original size:21 final size:21
Alignment explanation
Indices: 23231076--23231130 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
23231066 GTGTCCCCTC
23231076 CACACGGGCGTGTGTGGCCTT
1 CACACGGGCGTGTGTGGCCTT
* *
23231097 CACACGGGCGTTTTTGGCCTT
1 CACACGGGCGTGTGTGGCCTT
*
23231118 CACATGGGCGTGT
1 CACACGGGCGTGT
23231131 AAACCCCTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.11, C:0.27, G:0.35, T:0.27
Consensus pattern (21 bp):
CACACGGGCGTGTGTGGCCTT
Found at i:23233074 original size:14 final size:15
Alignment explanation
Indices: 23233040--23233084 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
23233030 ATTAGTCTCC
23233040 AATTATAATAAATAT
1 AATTATAATAAATAT
23233055 AA-TATAATAAATA-
1 AATTATAATAAATAT
*
23233068 AATTATAGTAAAATAT
1 AATTATAAT-AAATAT
23233084 A
1 A
23233085 CTTGAGATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 2 0.08
14 16 0.62
15 7 0.27
16 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (15 bp):
AATTATAATAAATAT
Found at i:23233442 original size:61 final size:61
Alignment explanation
Indices: 23233367--23233487 Score: 233
Period size: 61 Copynumber: 2.0 Consensus size: 61
23233357 TGTATTTTAT
*
23233367 TGATTAATGGGATATTTACAAAGCTTCTCAAAAGTCTTTATTTATAGGCATAAGAAGTAAC
1 TGATTAATGAGATATTTACAAAGCTTCTCAAAAGTCTTTATTTATAGGCATAAGAAGTAAC
23233428 TGATTAATGAGATATTTACAAAGCTTCTCAAAAGTCTTTATTTATAGGCATAAGAAGTAA
1 TGATTAATGAGATATTTACAAAGCTTCTCAAAAGTCTTTATTTATAGGCATAAGAAGTAA
23233488 AAATGAAGTA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (61 bp):
TGATTAATGAGATATTTACAAAGCTTCTCAAAAGTCTTTATTTATAGGCATAAGAAGTAAC
Found at i:23234717 original size:40 final size:40
Alignment explanation
Indices: 23234680--23234797 Score: 164
Period size: 40 Copynumber: 3.0 Consensus size: 40
23234670 ATAAAAAATA
* * *
23234680 CTGCTACAGATCGAGCATTAGTGGCGCTTTTTGAAAAACG
1 CTGCTATAGATCGACCATTAGCGGCGCTTTTTGAAAAACG
* *
23234720 CTGCTATAGATGGACCATTAGCGGTGCTTTTTGAAAAACG
1 CTGCTATAGATCGACCATTAGCGGCGCTTTTTGAAAAACG
* * *
23234760 CCGCTATAGGTTGACCATTAGCGGCGCTTTTTGAAAAA
1 CTGCTATAGATCGACCATTAGCGGCGCTTTTTGAAAAA
23234798 TGTCGCAAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (40 bp):
CTGCTATAGATCGACCATTAGCGGCGCTTTTTGAAAAACG
Found at i:23234896 original size:154 final size:154
Alignment explanation
Indices: 23234694--23235054 Score: 492
Period size: 154 Copynumber: 2.3 Consensus size: 154
23234684 TACAGATCGA
* * * *
23234694 GCATTAGTGGCGCTTTTTGAAAAACGCTGCTATAGATGGACCATTAGCGGTGCTTTTTGAAAAAC
1 GCATTAGTGGC-CTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAC
* * * * * *
23234759 GCCGCTATAGGTTGACCATTAGCGGCGCTTTTTGAAAAATGTCGCAAAAAAA-TAAGCACAATGT
65 GCCGCTATAGGTTGACCATTAGCGCCACTTTTTGAAAAACGCCGCAAAAAAATTAAGCACAACGC
23234823 CGTCT-TTTTATGTTGAGCTTTAGTG
130 CGT-TGTTTTATGTTGAGCTTTAGTG
23234848 GCATTAGTGGCACTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAC
1 GCATTAGTGGC-CTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAC
* *
23234913 GCTGCTATAGGTTGACCATTAGTGCCACTTTTTGAAAAACGCCGCAAAAAAATTAAGCACAACGC
65 GCCGCTATAGGTTGACCATTAGCGCCACTTTTTGAAAAACGCCGCAAAAAAATTAAGCACAACGC
*
23234978 CGTTGTTTTATGTTGAGTTTTAGTG
130 CGTTGTTTTATGTTGAGCTTTAGTG
* * ** * *
23235003 GCATTAGCAGTGCTTTTTTGAAAAATACCGTTATAGGTCGAGCATTAGCGGC
1 GCATTAG-TG-GCCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGC
23235055 ATTTCTTTAA
Statistics
Matches: 183, Mismatches: 20, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
154 107 0.58
155 39 0.21
156 35 0.19
157 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (154 bp):
GCATTAGTGGCCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACG
CCGCTATAGGTTGACCATTAGCGCCACTTTTTGAAAAACGCCGCAAAAAAATTAAGCACAACGCC
GTTGTTTTATGTTGAGCTTTAGTG
Found at i:23234904 original size:40 final size:40
Alignment explanation
Indices: 23234848--23234957 Score: 157
Period size: 40 Copynumber: 2.8 Consensus size: 40
23234838 AGCTTTAGTG
23234848 GCATTAGTGGCACTTTTTGAAAAACGCCGCTATAGATCGA
1 GCATTAGTGGCACTTTTTGAAAAACGCCGCTATAGATCGA
* * * * *
23234888 GCATTAGCGGCGCTTTTTGAAAAACGCTGCTATAGGTTGA
1 GCATTAGTGGCACTTTTTGAAAAACGCCGCTATAGATCGA
* *
23234928 CCATTAGTGCCACTTTTTGAAAAACGCCGC
1 GCATTAGTGGCACTTTTTGAAAAACGCCGC
23234958 AAAAAAATTA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (40 bp):
GCATTAGTGGCACTTTTTGAAAAACGCCGCTATAGATCGA
Found at i:23235525 original size:7 final size:7
Alignment explanation
Indices: 23235513--23235697 Score: 79
Period size: 7 Copynumber: 25.9 Consensus size: 7
23235503 TATCATTATA
23235513 GTTTAGG
1 GTTTAGG
23235520 GTTTAGG
1 GTTTAGG
*
23235527 GTTTATG
1 GTTTAGG
*
23235534 GTTTAAG
1 GTTTAGG
*
23235541 GTTTAGAA
1 GTTTAG-G
23235549 GTTACTA--
1 GTT--TAGG
* *
23235556 TTTTAAG
1 GTTTAGG
* *
23235563 GTTCATG
1 GTTTAGG
*
23235570 GATTATGG
1 GTTTA-GG
23235578 GTTTAGG
1 GTTTAGG
* *
23235585 GATTATG
1 GTTTAGG
*
23235592 GTTTATG
1 GTTTAGG
*
23235599 GTTTATG
1 GTTTAGG
*
23235606 GTTTATG
1 GTTTAGG
* *
23235613 GTGTATG
1 GTTTAGG
* *
23235620 GTGTATG
1 GTTTAGG
23235627 GTTTACGG
1 GTTTA-GG
23235635 GTTTAGG
1 GTTTAGG
23235642 GTTTAGG
1 GTTTAGG
* *
23235649 ATTTATG
1 GTTTAGG
*
23235656 ATTTAGGG
1 GTTTA-GG
*
23235664 GTTAAGG
1 GTTTAGG
23235671 G-TTAGGG
1 GTTTA-GG
* *
23235678 GATAAGG
1 GTTTAGG
23235685 GTTTAGG
1 GTTTAGG
23235692 GTTTAG
1 GTTTAG
23235698 ATTAATTAGT
Statistics
Matches: 141, Mismatches: 27, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
5 2 0.01
6 2 0.01
7 115 0.82
8 20 0.14
10 2 0.01
ACGTcount: A:0.21, C:0.02, G:0.35, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:23235536 original size:14 final size:14
Alignment explanation
Indices: 23235508--23235696 Score: 94
Period size: 14 Copynumber: 13.2 Consensus size: 14
23235498 TTAATTATCA
*
23235508 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
* *
23235522 TTAGGGTTTATGGT
1 TTATGGTTTAGGGT
* *
23235536 TTAAGGTTTAGAAGT
1 TTATGGTTTAG-GGT
*
23235551 TACTAT--TTTAAGGT
1 T--TATGGTTTAGGGT
* *
23235565 TCATGGATTATGGGT
1 TTATGGTTTA-GGGT
* * *
23235580 TTAGGGATTATGGT
1 TTATGGTTTAGGGT
*
23235594 TTATGGTTTATGGT
1 TTATGGTTTAGGGT
* *
23235608 TTATGGTGTATGGT
1 TTATGGTTTAGGGT
*
23235622 GTATGGTTTACGGGT
1 TTATGGTTTA-GGGT
* *
23235637 TTAGGGTTTAGGAT
1 TTATGGTTTAGGGT
* *
23235651 TTATGATTTAGGGG
1 TTATGGTTTAGGGT
* * *
23235665 TTAAGGGTTAGGGGA
1 TTATGGTTTA-GGGT
* *
23235680 TAAGGGTTTAGGGT
1 TTATGGTTTAGGGT
23235694 TTA
1 TTA
23235697 GATTAATTAG
Statistics
Matches: 130, Mismatches: 37, Indels: 16
0.71 0.20 0.09
Matches are distributed among these distances:
12 2 0.02
14 87 0.67
15 39 0.30
17 2 0.02
ACGTcount: A:0.21, C:0.02, G:0.33, T:0.44
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:23235537 original size:21 final size:21
Alignment explanation
Indices: 23235508--23235697 Score: 89
Period size: 21 Copynumber: 8.9 Consensus size: 21
23235498 TTAATTATCA
*
23235508 TTATAGTTTAGGGTTTAGGGT
1 TTATGGTTTAGGGTTTAGGGT
* *
23235529 TTATGGTTTAAGGTTTAGAAGT
1 TTATGGTTTAGGGTTTAG-GGT
* * * *
23235551 TACTAT--TTTAAGGTTCATGGA
1 T--TATGGTTTAGGGTTTAGGGT
* *
23235572 TTATGGGTTTAGGGATTATGGT
1 TTAT-GGTTTAGGGTTTAGGGT
* *
23235594 TTATGGTTTATGGTTTATGGT
1 TTATGGTTTAGGGTTTAGGGT
* * *
23235615 GTATGGTGTATGGTTTACGGGT
1 TTATGGTTTAGGGTTTA-GGGT
* * * *
23235637 TTAGGGTTTAGGATTTATGAT
1 TTATGGTTTAGGGTTTAGGGT
* * *
23235658 TTAGGGGTTAAGGG-TTAGGGGA
1 TTA-TGGTTTAGGGTTTA-GGGT
* *
23235680 TAAGGGTTTAGGGTTTAG
1 TTATGGTTTAGGGTTTAG
23235698 ATTAATTAGT
Statistics
Matches: 129, Mismatches: 30, Indels: 20
0.72 0.17 0.11
Matches are distributed among these distances:
19 3 0.02
21 66 0.51
22 57 0.44
24 3 0.02
ACGTcount: A:0.21, C:0.02, G:0.34, T:0.44
Consensus pattern (21 bp):
TTATGGTTTAGGGTTTAGGGT
Found at i:23241995 original size:25 final size:25
Alignment explanation
Indices: 23241967--23242077 Score: 98
Period size: 25 Copynumber: 4.4 Consensus size: 25
23241957 CACAGCTCTT
*
23241967 ATGAGCTTCCCCATATTTAGCTCGC
1 ATGAGCTTCCCCATATTCAGCTCGC
** ** *
23241992 ATGAGCTTCCTGATATTTGGCTTGC
1 ATGAGCTTCCCCATATTCAGCTCGC
** * *
23242017 ATGAGCTTCCCGTTATACAGCTTGC
1 ATGAGCTTCCCCATATTCAGCTCGC
*
23242042 ATGAGCTT-CCCATTATTCAGCTCGG
1 ATGAGCTTCCCCA-TATTCAGCTCGC
*
23242067 AGGAGCTTCCC
1 ATGAGCTTCCC
23242078 GTTTACAGCT
Statistics
Matches: 69, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
24 2 0.03
25 65 0.94
26 2 0.03
ACGTcount: A:0.19, C:0.28, G:0.21, T:0.32
Consensus pattern (25 bp):
ATGAGCTTCCCCATATTCAGCTCGC
Found at i:23246991 original size:59 final size:59
Alignment explanation
Indices: 23246914--23247027 Score: 185
Period size: 59 Copynumber: 1.9 Consensus size: 59
23246904 GGGGATTGTA
* * *
23246914 GATTCTTCGTGTTTCCAAGGCTTCTTAGGATTTCTACATACCATGTTCTATCTTTCATG
1 GATTCTTCGTGTTTCCAAGGCTTCTTAAGACTTCTACATACCACGTTCTATCTTTCATG
23246973 GATTCTTCGT-TTTACCAAGGCTTCTTAAGACTTCTACATACCACGTTCTATCTTT
1 GATTCTTCGTGTTT-CCAAGGCTTCTTAAGACTTCTACATACCACGTTCTATCTTT
23247028 TCATCTATCT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
58 3 0.06
59 48 0.94
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (59 bp):
GATTCTTCGTGTTTCCAAGGCTTCTTAAGACTTCTACATACCACGTTCTATCTTTCATG
Found at i:23254882 original size:12 final size:12
Alignment explanation
Indices: 23254861--23254894 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
23254851 TATATTTTTT
*
23254861 AAAATTATATAA
1 AAAATAATATAA
23254873 AAAATAATATAA
1 AAAATAATATAA
*
23254885 AAATTAATAT
1 AAAATAATAT
23254895 GGGCGGGCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:23258019 original size:20 final size:22
Alignment explanation
Indices: 23257982--23258021 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
23257972 TTTGGTATCG
23257982 TTTTTAAGAAAGGTATCGATTA
1 TTTTTAAGAAAGGTATCGATTA
23258004 TTTTTAA-AAA-GTATCGAT
1 TTTTTAAGAAAGGTATCGAT
23258022 ACCGAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 3 0.17
22 7 0.39
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (22 bp):
TTTTTAAGAAAGGTATCGATTA
Found at i:23258215 original size:20 final size:20
Alignment explanation
Indices: 23258184--23258246 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
23258174 TGAAAATCAT
*
23258184 TTAAAATGATTTTAACTTGA
1 TTAAAATCATTTTAACTTGA
* * *
23258204 TTGAAATCATTTTGACTTGG
1 TTAAAATCATTTTAACTTGA
*
23258224 TTAAAATCATTTGCAACTTGA
1 TTAAAATCATTT-TAACTTGA
23258245 TT
1 TT
23258247 TTAAAATTGT
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
20 27 0.79
21 7 0.21
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.44
Consensus pattern (20 bp):
TTAAAATCATTTTAACTTGA
Found at i:23259684 original size:3 final size:3
Alignment explanation
Indices: 23259676--23259732 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
23259666 AAAGCCCTAG
23259676 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
23259724 GAA GAA GAA
1 GAA GAA GAA
23259733 AAAAACCAAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:23260480 original size:62 final size:62
Alignment explanation
Indices: 23260383--23260507 Score: 241
Period size: 62 Copynumber: 2.0 Consensus size: 62
23260373 GGAACTGTCT
23260383 TTTCCAGGTTTTTTTTTTTTTTAACAATCTAAAGCTTCATTTTGTATTAAAAAACAATTGGA
1 TTTCCAGGTTTTTTTTTTTTTTAACAATCTAAAGCTTCATTTTGTATTAAAAAACAATTGGA
*
23260445 TTTCCAGGTTTTTTTTTTTTTTAACAATCTAAAGCTTCATTTTGTATTGAAAAACAATTGGA
1 TTTCCAGGTTTTTTTTTTTTTTAACAATCTAAAGCTTCATTTTGTATTAAAAAACAATTGGA
23260507 T
1 T
23260508 ATTGTTAATA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.30, C:0.11, G:0.10, T:0.49
Consensus pattern (62 bp):
TTTCCAGGTTTTTTTTTTTTTTAACAATCTAAAGCTTCATTTTGTATTAAAAAACAATTGGA
Found at i:23267185 original size:24 final size:23
Alignment explanation
Indices: 23267115--23267200 Score: 66
Period size: 24 Copynumber: 3.5 Consensus size: 23
23267105 ATATAAGTTG
*
23267115 AAGTAATTATAATACAAAATATTA
1 AAGTAATTATAATACAAAAT-TAA
* * * *
23267139 AAG-ATTTACTAATAGATAGTTAA
1 AAGTAATTA-TAATACAAAATTAA
23267162 AAGTTAATTATAATACAAAATTAA
1 AAG-TAATTATAATACAAAATTAA
23267186 ACCAGTACATTATAA
1 A--AGTA-ATTATAA
23267201 GTAGGTTAGA
Statistics
Matches: 47, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
23 9 0.19
24 23 0.49
25 6 0.13
26 9 0.19
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (23 bp):
AAGTAATTATAATACAAAATTAA
Found at i:23267636 original size:14 final size:14
Alignment explanation
Indices: 23267619--23267652 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
23267609 TCATCATTTG
23267619 CCTATAACCAAAAC
1 CCTATAACCAAAAC
23267633 CCTATAACCAAAAC
1 CCTATAACCAAAAC
23267647 CC-ATAA
1 CCTATAA
23267653 ACTCATACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (14 bp):
CCTATAACCAAAAC
Found at i:23267766 original size:9 final size:9
Alignment explanation
Indices: 23267752--23267781 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
23267742 GAAGAGAATG
23267752 GAAAATAAA
1 GAAAATAAA
23267761 GAAAATAAA
1 GAAAATAAA
23267770 GAAAATAAA
1 GAAAATAAA
23267779 GAA
1 GAA
23267782 TTAAATTGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (9 bp):
GAAAATAAA
Found at i:23268170 original size:5 final size:5
Alignment explanation
Indices: 23268160--23268191 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
23268150 TAAGAATAGA
23268160 GGGTT GGGTT GGGTT GGGTT GGGTT GGGTT GG
1 GGGTT GGGTT GGGTT GGGTT GGGTT GGGTT GG
23268192 TGTCCAAGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.62, T:0.38
Consensus pattern (5 bp):
GGGTT
Found at i:23268294 original size:14 final size:14
Alignment explanation
Indices: 23268275--23268303 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
23268265 GCAGAGCCGA
23268275 AGGGAGAGGGAGAG
1 AGGGAGAGGGAGAG
23268289 AGGGAGAGGGAGAG
1 AGGGAGAGGGAGAG
23268303 A
1 A
23268304 AGAAGCTCCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (14 bp):
AGGGAGAGGGAGAG
Found at i:23269034 original size:12 final size:12
Alignment explanation
Indices: 23269017--23269043 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
23269007 TACATAATAC
23269017 ATATAATATAAT
1 ATATAATATAAT
23269029 ATATAATATAAT
1 ATATAATATAAT
23269041 ATA
1 ATA
23269044 CCTCTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATAATATAAT
Found at i:23272550 original size:51 final size:53
Alignment explanation
Indices: 23272494--23272768 Score: 257
Period size: 51 Copynumber: 5.3 Consensus size: 53
23272484 TCTCGTAGCT
* *
23272494 TCCTCTTCCTCTTCCCTCCTCCGAGCATC-C-TCTTCCTCTCTCCTTCTGGCC
1 TCCTCTTCCTCTTCCCTCCTCCTAGCTTCTCTTCTTCCTCTCTCCTTCTGGCC
* * * *
23272545 TCCTCTTCCTCTT--C-CCTCCTAGCTTCTTCTTCCTCCTCTCTCCTCCTAGCT
1 TCCTCTTCCTCTTCCCTCCTCCTAGCTTC-TCTTCTTCCTCTCTCCTTCTGGCC
* * * * *
23272596 TCTTCTTCCTCCTCTCTCCTCCTAGCTTCTTCTTCCTCCTCTCTCCTCCTGGCC
1 TCCTCTTCCTCTTCCCTCCTCCTAGCTTC-TCTTCTTCCTCTCTCCTTCTGGCC
* * * * *
23272650 T-CT-TT-TTCTTCTCTTCTCTTAGCTTCTTCCTCTTCCTCTCTCCTTCTGGCC
1 TCCTCTTCCTCTTCCCTCCTCCTAGCTTC-TCTTCTTCCTCTCTCCTTCTGGCC
* * * *
23272701 TCCTC-T--TCTTCCTTTCTCTTAGCTTCTTCGTCTTCCTCTCTCCTTCTGGCC
1 TCCTCTTCCTCTTCCCTCCTCCTAGCTTC-TCTTCTTCCTCTCTCCTTCTGGCC
23272752 TCCTCTTCCTCTTCCCT
1 TCCTCTTCCTCTTCCCT
23272769 TCTCTTTTGG
Statistics
Matches: 191, Mismatches: 22, Indels: 19
0.82 0.09 0.08
Matches are distributed among these distances:
48 10 0.05
49 1 0.01
50 1 0.01
51 128 0.67
52 6 0.03
53 2 0.01
54 43 0.23
ACGTcount: A:0.03, C:0.47, G:0.06, T:0.45
Consensus pattern (53 bp):
TCCTCTTCCTCTTCCCTCCTCCTAGCTTCTCTTCTTCCTCTCTCCTTCTGGCC
Found at i:23272645 original size:27 final size:27
Alignment explanation
Indices: 23272489--23272762 Score: 203
Period size: 27 Copynumber: 10.6 Consensus size: 27
23272479 TCCCTTCTCG
* * *
23272489 TAGCTTCCTCTTCCTCTTCCCTCCTCC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * * *
23272516 GAGCATC--C-TCTTCCTCTCTCCTTC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * *
23272540 TGGCCTCCTCTTCCT-CT-TC-CCTCC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
23272564 TAGCTTCTTCTTCCTCCTCTCTCCTCC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
23272591 TAGCTTCTTCTTCCTCCTCTCTCCTCC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
23272618 TAGCTTCTTCTTCCTCCTCTCTCCTCC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * * * *
23272645 TGGCCTCTT-TT--TCTTCTCTTCTCT
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * *
23272669 TAGCTTCTTCCTCTTCCTCTCTCCTTC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * * * *
23272696 TGGCCTCCTCTTCTTCCT-T-T-CTCT
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * *
23272720 TAGCTTCTTCGTCTTCCTCTCTCCTTC
1 TAGCTTCTTCTTCCTCCTCTCTCCTCC
* * *
23272747 TGGCCTCCTCTTCCTC
1 TAGCTTCTTCTTCCTC
23272763 TTCCCTTCTC
Statistics
Matches: 192, Mismatches: 43, Indels: 24
0.74 0.17 0.09
Matches are distributed among these distances:
24 65 0.34
25 8 0.04
26 9 0.05
27 110 0.57
ACGTcount: A:0.03, C:0.46, G:0.06, T:0.45
Consensus pattern (27 bp):
TAGCTTCTTCTTCCTCCTCTCTCCTCC
Found at i:23272763 original size:81 final size:78
Alignment explanation
Indices: 23272521--23272819 Score: 242
Period size: 78 Copynumber: 3.8 Consensus size: 78
23272511 CCTCCGAGCA
23272521 TCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCCTCTTC-CCTCCTAGCTTCTTCTTCCTCCTCTC
1 TCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCCTCTTCTCCTCCTAGCTTCTTC-TCCTCCTCTC
*
23272585 TCCTCCTAGCTTCT
65 TCCTTCTAGCTTCT
* * * * * * * * * *
23272599 TCTTCCTCCTCTCTCCTCCTAGCTTCTTCTTCCTCCTCTCTCCTCCTGGCCTCTT-T-TTCTTCT
1 TCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCCT-CT-TCTCCTCCTAGCTTCTTCTCCTCCTCT
*
23272662 CTTC-TCTTAGCTTCT
64 CTCCTTC-TAGCTTCT
* * *
23272677 TCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCTTCCTT-T-CTCTTAGCTTCTTCGTCTTCCTCT
1 TCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCCT-CTTCTCCTCCTAGCTTCTTC-TCCTCCTCT
*
23272740 CTCCTTCTGGCCTCCTCT
64 CTCCTTCTAG-CT--TCT
* * * *
23272758 TCCTCTTCC-CT-TCTCTTTTGGGCCTCTTCTTCTTCTT-TCCTCTTAGCTTC-T-TCCTCCTCT
1 TCCTCTTCCTCTCTC-CTTCT-GGCCTCCTCTTCCTCTTCTCCTCCTAGCTTCTTCTCCTCCTCT
23272818 CT
64 CT
23272820 TCTCTTTCTG
Statistics
Matches: 179, Mismatches: 28, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
75 10 0.06
76 1 0.01
77 3 0.02
78 95 0.53
79 9 0.05
80 13 0.07
81 48 0.27
ACGTcount: A:0.02, C:0.44, G:0.06, T:0.47
Consensus pattern (78 bp):
TCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCCTCTTCTCCTCCTAGCTTCTTCTCCTCCTCTCT
CCTTCTAGCTTCT
Found at i:23272765 original size:30 final size:31
Alignment explanation
Indices: 23272725--23272801 Score: 79
Period size: 30 Copynumber: 2.5 Consensus size: 31
23272715 TCTCTTAGCT
*
23272725 TCTTCGTCTTCCTC-TCTCCTTCT-GGCCTCC
1 TCTTCCTCTTCCTCTTCT-CTTCTGGGCCTCC
* *
23272755 TCTTCCTCTTCC-CTTCTCTTTTGGGCCTCT
1 TCTTCCTCTTCCTCTTCTCTTCTGGGCCTCC
*
23272785 TCTTCTTCTTTCCTCTT
1 TCTTCCTC-TTCCTCTT
23272802 AGCTTCTTCC
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
29 5 0.13
30 27 0.69
31 4 0.10
32 3 0.08
ACGTcount: A:0.00, C:0.42, G:0.08, T:0.51
Consensus pattern (31 bp):
TCTTCCTCTTCCTCTTCTCTTCTGGGCCTCC
Found at i:23272786 original size:51 final size:49
Alignment explanation
Indices: 23272632--23272786 Score: 141
Period size: 51 Copynumber: 3.0 Consensus size: 49
23272622 TTCTTCTTCC
* * * * **
23272632 TCCTCTCTCCTCCTGGCCTCTTTTTCTTCTCTTCTCTTAGCTTCTTCCTCT
1 TCCTCTCTCCTTCTGGCCTCCTCTTCTTCCCTTCTCTTA--TTCGGCCTCT
* ** *
23272683 TCCTCTCTCCTTCTGGCCTCCTCTTCTTCCTTTCTCTTAGCTTCTTCGTCT
1 TCCTCTCTCCTTCTGGCCTCCTCTTCTTCCCTTCTCTTA--TTCGGCCTCT
*
23272734 TCCTCTCTCCTTCTGGCCTCCTCTTCCTCTTCCCTTCTCTT-TTGGGCCTCT
1 TCCTCTCTCCTTCTGGCCTCCTC-T--TCTTCCCTTCTCTTATTCGGCCTCT
23272785 TC
1 TC
23272787 TTCTTCTTTC
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
51 76 0.84
52 1 0.01
54 13 0.14
ACGTcount: A:0.01, C:0.43, G:0.08, T:0.48
Consensus pattern (49 bp):
TCCTCTCTCCTTCTGGCCTCCTCTTCTTCCCTTCTCTTATTCGGCCTCT
Found at i:23272822 original size:51 final size:53
Alignment explanation
Indices: 23272755--23272879 Score: 143
Period size: 51 Copynumber: 2.4 Consensus size: 53
23272745 TCTGGCCTCC
* * *
23272755 TCTTCCTCTTCCCTTCTCTTT-TGGGCCTCTTCTT-CT-TCTTTCCTCTTAGCT
1 TCTTCCTCCTCCCTTCTCTTTCT-GGCCTCCTCTTCCTCTCTTTCCTCCTAGCT
* *
23272806 TCTTCCTCCTCTCTTCTCTTTCTGGCCTCCTCTTCCTCCTCTTTCCTCCTGGCT
1 TCTTCCTCCTCCCTTCTCTTTCTGGCCTCCTCTTCCT-CTCTTTCCTCCTAGCT
*
23272860 TCTTCCT-CTTCCTTC-CTTTC
1 TCTTCCTCCTCCCTTCTCTTTC
23272880 CCTTTCAATT
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
51 29 0.46
52 8 0.13
53 6 0.10
54 20 0.32
ACGTcount: A:0.01, C:0.42, G:0.06, T:0.50
Consensus pattern (53 bp):
TCTTCCTCCTCCCTTCTCTTTCTGGCCTCCTCTTCCTCTCTTTCCTCCTAGCT
Found at i:23272857 original size:27 final size:27
Alignment explanation
Indices: 23272494--23272880 Score: 121
Period size: 27 Copynumber: 14.7 Consensus size: 27
23272484 TCTCGTAGCT
* ** *
23272494 TCCTCTTCCTCTTCCCTCCTCC-GAGCA
1 TCCTCTTCCTCCTCTTTCCTCCTG-GCC
*
23272521 TCCTCTTCCT-CTC--TCCTTCTGGCC
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * *
23272545 TCCTC-T--TCCTCTTCCCTCCTAGCT
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * * *
23272569 TCTTCTTCCTCCTCTCTCCTCCTAGCT
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * * *
23272596 TCTTCTTCCTCCTCTCTCCTCCTAGCT
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* *
23272623 TCTTCTTCCTCCTCTCTCCTCCTGGCC
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * * * * *
23272650 T-CTTTTTCTTCTC-TT-CTCTTAGCT
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * * * *
23272674 TCTTCCTCTTCCTCTCTCCTTCTGGCC
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * * *
23272701 TCCTCTT-CTTC-CTTT-CTCTTAGCT
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * * * *
23272725 TCTTCGTCTTCCTCTCTCCTTCTGGCC
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
* * **
23272752 TCCTCTTCCTCTTCCCTTCTCTTTTGGGCC
1 TCCTCTTCCTCCT-CTTTC-CTCCT-GGCC
* * *
23272782 TCTTCTT-CT--TCTTTCCTCTTAG-C
1 TCCTCTTCCTCCTCTTTCCTCCTGGCC
*
23272805 T--TCTTCCTCCTCTCTTCTCTTTCTGGCC
1 TCCTCTTCCTCCTCT-TTC-C-TCCTGGCC
23272833 TCCTCTTCCTCCTCTTTCCTCCTGGCTTC
1 TCCTCTTCCTCCTCTTTCCTCCTGGC--C
*
23272862 TTCCTCTTCCTTC-CTTTCC
1 -TCCTCTTCCTCCTCTTTCC
23272881 CTTTCAATTT
Statistics
Matches: 267, Mismatches: 65, Indels: 54
0.69 0.17 0.14
Matches are distributed among these distances:
21 5 0.02
22 5 0.02
23 3 0.01
24 44 0.16
25 21 0.08
26 21 0.08
27 113 0.42
28 6 0.02
29 16 0.06
30 33 0.12
ACGTcount: A:0.02, C:0.45, G:0.06, T:0.47
Consensus pattern (27 bp):
TCCTCTTCCTCCTCTTTCCTCCTGGCC
Found at i:23272894 original size:132 final size:132
Alignment explanation
Indices: 23272587--23272872 Score: 314
Period size: 132 Copynumber: 2.2 Consensus size: 132
23272577 CTCCTCTCTC
* * * * * * * **
23272587 CTCCTAGCTTCTTCTTCCTCCTCTCTCCTCCTAG-CTTCTTCTTCCTCCTCTC-TC-CTCCT-GG
1 CTCCTAGCTTCTTCCTCTTCCTCTCTCCTTCT-GCCCTCATCTTCCTCTTCCCTTCTCTTTTGGG
* * *
23272648 CCTCTTTTTCTTCTCTTCTCTTAGCTTCTTCCTCTTCCTCTCTCCTTCTGGCCTCCTCTTCTTCC
65 CCTCTTCTTCTTCTCTTCTCTTAGCTTCTTCCTCCTCCTCTCTCCTTCTGGCCTCCTCTTCTCCC
23272713 TTT
130 TTT
* * * *
23272716 CTCTTAGCTTCTTCGTCTTCCTCTCTCCTTCTGGCCTCCTCTTCCTCTTCCCTTCTCTTTTGGGC
1 CTCCTAGCTTCTTCCTCTTCCTCTCTCCTTCTGCCCTCATCTTCCTCTTCCCTTCTCTTTTGGGC
*
23272781 CTCTTCTTCTTCT-TTCCTCTTAGCTTCTTCCTCCT-CTCTTCTCTTTCTGGCCTCCTCTTCCTC
66 CTCTTCTTCTTCTCTT-CTCTTAGCTTCTTCCTCCTCCTC-TCTCCTTCTGGCCTCCTCTT-CTC
23272844 CTCTTT
128 C-CTTT
*
23272850 CCTCCTGGCTTCTTCCTCTTCCT
1 -CTCCTAGCTTCTTCCTCTTCCT
23272873 TCCTTTCCCT
Statistics
Matches: 131, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
128 1 0.01
129 42 0.32
130 2 0.02
131 8 0.06
132 52 0.40
133 3 0.02
134 4 0.03
135 19 0.15
ACGTcount: A:0.02, C:0.43, G:0.07, T:0.48
Consensus pattern (132 bp):
CTCCTAGCTTCTTCCTCTTCCTCTCTCCTTCTGCCCTCATCTTCCTCTTCCCTTCTCTTTTGGGC
CTCTTCTTCTTCTCTTCTCTTAGCTTCTTCCTCCTCCTCTCTCCTTCTGGCCTCCTCTTCTCCCT
TT
Found at i:23279212 original size:3 final size:3
Alignment explanation
Indices: 23279204--23279234 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
23279194 GAACAAATTT
23279204 GAA GAA GAA GAA GAA GAA GAAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA G-AA GAA GAA GAA
23279235 AGAAAGACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:23279229 original size:10 final size:10
Alignment explanation
Indices: 23279205--23279238 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
23279195 AACAAATTTG
23279205 AAGAAGAAG-
1 AAGAAGAAGA
23279214 AAGAAGAAGA
1 AAGAAGAAGA
23279224 AAGAAGAAGA
1 AAGAAGAAGA
23279234 AAGAA
1 AAGAA
23279239 AGACCAGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (10 bp):
AAGAAGAAGA
Found at i:23282582 original size:263 final size:263
Alignment explanation
Indices: 23282115--23282640 Score: 1016
Period size: 263 Copynumber: 2.0 Consensus size: 263
23282105 AGCATGCAAA
23282115 CAATATCAAAATAAGATAGCATCGAGGGAGTTCAACTTCATTGAATTCGACATAAAACATAAACG
1 CAATATCAAAATAAGATAGCATCGAGGGAGTTCAACTTCATTGAATTCGACATAAAACATAAACG
23282180 ATATTGTTTGATATTGACATACAACCGGCTGCTGAGGAAATTTGACACTATATCCAAGGATGTCC
66 ATATTGTTTGATATTGACATACAACCGGCTGCTGAGGAAATTTGACACTATATCCAAGGATGTCC
23282245 TGTCAACTAGCAATTAATCATAATCGATTGGATGATGAGTCCTTTAACCGTCAACTACGCAATTC
131 TGTCAACTAGCAATTAATCATAATCGATTGGATGATGAGTCCTTTAACCGTCAACTACGCAATTC
* * *
23282310 CACTGCAGTTCACATACACGTGGCTCTAACAACATCTAAATGTAATTAGAATCGATCGCAAATTG
196 CACTGCAGTTCACATACACGTGGCACTAACAACATCTAAATGTAATTAGAATCGATCACAAATCG
23282375 ATT
261 ATT
23282378 CAATATCAAAATAAGATAGCATCGAGGGAGTTCAACTTCATTGAATTCGACATAAAACATAAACG
1 CAATATCAAAATAAGATAGCATCGAGGGAGTTCAACTTCATTGAATTCGACATAAAACATAAACG
23282443 ATATTGTTTGATATTGACATACAACCGGCTGCTGAGGAAATTTGACACTATATCCAAGGATGTCC
66 ATATTGTTTGATATTGACATACAACCGGCTGCTGAGGAAATTTGACACTATATCCAAGGATGTCC
23282508 TGTCAACTAGCAATTAATCATAATCGATTGGATGATGAGTCCTTTAACCGTCAACTACGCAATTC
131 TGTCAACTAGCAATTAATCATAATCGATTGGATGATGAGTCCTTTAACCGTCAACTACGCAATTC
*
23282573 CACTGCAGTTCACATACACGTGGCACTAACAACATCTAAATGTAATTAGAATCTATCACAAATCG
196 CACTGCAGTTCACATACACGTGGCACTAACAACATCTAAATGTAATTAGAATCGATCACAAATCG
23282638 ATT
261 ATT
23282641 GGATGATGAG
Statistics
Matches: 259, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
263 259 1.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (263 bp):
CAATATCAAAATAAGATAGCATCGAGGGAGTTCAACTTCATTGAATTCGACATAAAACATAAACG
ATATTGTTTGATATTGACATACAACCGGCTGCTGAGGAAATTTGACACTATATCCAAGGATGTCC
TGTCAACTAGCAATTAATCATAATCGATTGGATGATGAGTCCTTTAACCGTCAACTACGCAATTC
CACTGCAGTTCACATACACGTGGCACTAACAACATCTAAATGTAATTAGAATCGATCACAAATCG
ATT
Found at i:23288127 original size:41 final size:41
Alignment explanation
Indices: 23288059--23288147 Score: 133
Period size: 41 Copynumber: 2.2 Consensus size: 41
23288049 GTTTGGAATT
* * *
23288059 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATCTAAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
23288100 GGTGATCTAAATCAGGCTGTAAGCCTAGCAGGCTAAGTGCC
1 GGTGATCTAAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
23288141 GGTGATC
1 GGTGATC
23288148 CGAATATGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (41 bp):
GGTGATCTAAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
Found at i:23297888 original size:21 final size:21
Alignment explanation
Indices: 23297816--23297982 Score: 148
Period size: 21 Copynumber: 8.2 Consensus size: 21
23297806 ATACGCCAAT
23297816 AGAAGCTCG-AA-AGTTGAAC
1 AGAAGCTCGTAAGAGTTGAAC
* * *
23297835 AGAAGCTCTTAAGAGCTAAAC
1 AGAAGCTCGTAAGAGTTGAAC
* *
23297856 ATAAACTC---AGAGTTGAAC
1 AGAAGCTCGTAAGAGTTGAAC
* *
23297874 AGAAGCTCGTAAGAGTTGGAT
1 AGAAGCTCGTAAGAGTTGAAC
* *
23297895 AGAAACTCATAAGAGTTGAAC
1 AGAAGCTCGTAAGAGTTGAAC
23297916 AGAAGCTCGTAAGAGCTT-AAC
1 AGAAGCTCGTAAGAG-TTGAAC
* * *
23297937 AGAAACTCATAATAGTTGAAC
1 AGAAGCTCGTAAGAGTTGAAC
* * *
23297958 AGAAGCTCGAAAGAGCTAAAC
1 AGAAGCTCGTAAGAGTTGAAC
23297979 AGAA
1 AGAA
23297983 AGTAAAACAT
Statistics
Matches: 115, Mismatches: 26, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
18 14 0.12
19 8 0.07
20 4 0.03
21 87 0.76
22 2 0.02
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.19
Consensus pattern (21 bp):
AGAAGCTCGTAAGAGTTGAAC
Found at i:23297920 original size:42 final size:42
Alignment explanation
Indices: 23297827--23297983 Score: 205
Period size: 42 Copynumber: 3.8 Consensus size: 42
23297817 GAAGCTCGAA
* * *
23297827 AGTTGAACAGAAGCTCTTAAGAGCTAAACATAAACTC---AG
1 AGTTGAACAGAAGCTCGTAAGAGCTTAACAGAAACTCATAAG
* *
23297866 AGTTGAACAGAAGCTCGTAAGAG-TTGGATAGAAACTCATAAG
1 AGTTGAACAGAAGCTCGTAAGAGCTT-AACAGAAACTCATAAG
*
23297908 AGTTGAACAGAAGCTCGTAAGAGCTTAACAGAAACTCATAAT
1 AGTTGAACAGAAGCTCGTAAGAGCTTAACAGAAACTCATAAG
* *
23297950 AGTTGAACAGAAGCTCGAAAGAGCTAAACAGAAA
1 AGTTGAACAGAAGCTCGTAAGAGCTTAACAGAAA
23297984 GTAAAACATG
Statistics
Matches: 103, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
38 1 0.01
39 30 0.29
42 70 0.68
43 2 0.02
ACGTcount: A:0.44, C:0.15, G:0.22, T:0.19
Consensus pattern (42 bp):
AGTTGAACAGAAGCTCGTAAGAGCTTAACAGAAACTCATAAG
Found at i:23301077 original size:16 final size:15
Alignment explanation
Indices: 23301056--23301089 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
23301046 ATTTCAATTA
23301056 ATAATAAATAATAAAT
1 ATAATAAAT-ATAAAT
*
23301072 ATAATAAATTTAAAT
1 ATAATAAATATAAAT
23301087 ATA
1 ATA
23301090 CTTAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
ATAATAAATATAAAT
Found at i:23301591 original size:12 final size:12
Alignment explanation
Indices: 23301574--23301598 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23301564 TCTTTACGTG
23301574 TCTGTATATTAT
1 TCTGTATATTAT
23301586 TCTGTATATTAT
1 TCTGTATATTAT
23301598 T
1 T
23301599 TTATATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (12 bp):
TCTGTATATTAT
Found at i:23301904 original size:13 final size:13
Alignment explanation
Indices: 23301886--23301947 Score: 60
Period size: 13 Copynumber: 4.9 Consensus size: 13
23301876 ATTTTAAACA
*
23301886 TATTTAAATTTAT
1 TATTTAATTTTAT
23301899 TATTT-ATTATTA-
1 TATTTAATT-TTAT
23301911 TATTTAATTTTAT
1 TATTTAATTTTAT
*
23301924 TA-TTAATTATT-C
1 TATTTAATT-TTAT
23301936 TATTTAATTTTA
1 TATTTAATTTTA
23301948 GAAATTATCT
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
12 20 0.49
13 21 0.51
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (13 bp):
TATTTAATTTTAT
Found at i:23301914 original size:25 final size:25
Alignment explanation
Indices: 23301885--23301947 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
23301875 AATTTTAAAC
* *
23301885 ATATTTAAATTTATTATTTATTATT
1 ATATTTAATTTTATTATTAATTATT
23301910 ATATTTAATTTTATTATTAATTATT
1 ATATTTAATTTTATTATTAATTATT
*
23301935 CTATTTAATTTTA
1 ATATTTAATTTTA
23301948 GAAATTATCT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (25 bp):
ATATTTAATTTTATTATTAATTATT
Found at i:23303157 original size:24 final size:22
Alignment explanation
Indices: 23303130--23303173 Score: 52
Period size: 24 Copynumber: 1.9 Consensus size: 22
23303120 ATAATTTTAA
*
23303130 TTTACTATAATTGTATATTAAATG
1 TTTACTAAAATT-T-TATTAAATG
*
23303154 TTTATTAAAATTTTATTAAA
1 TTTACTAAAATTTTATTAAA
23303174 ATCATTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.39
23 1 0.06
24 10 0.56
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (22 bp):
TTTACTAAAATTTTATTAAATG
Found at i:23304491 original size:30 final size:29
Alignment explanation
Indices: 23304457--23304541 Score: 73
Period size: 33 Copynumber: 2.7 Consensus size: 29
23304447 TTAATTGTAA
*
23304457 TTAAATTAAAATAAAAATATAATAAA-ATTT
1 TTAAATTAAAATAAAAATA-AA-AAATAATT
23304487 TTAAAAATATAAAATAATATAATAAAAAATAATT
1 TT--AAAT-TAAAATAA-A-AATAAAAAATAATT
*
23304521 TTATAATTAAAATTAAAATAA
1 TTA-AATTAAAATAAAAATAA
23304542 CGGAAATTGT
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
30 7 0.15
31 1 0.02
32 12 0.26
33 14 0.30
34 8 0.17
35 4 0.09
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (29 bp):
TTAAATTAAAATAAAAATAAAAAATAATT
Found at i:23308087 original size:42 final size:43
Alignment explanation
Indices: 23308039--23308124 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
23308029 GAAAATTGTG
*
23308039 CAAAAATAGAAAATATGC-AAACAAAACACACAAAGATAAAAT
1 CAAAAATAGAAAATATGCAAAAAAAAACACACAAAGATAAAAT
*
23308081 CAAAAATAGAAAATATGCAAAAAAAAACACACAAAGATGAAAT
1 CAAAAATAGAAAATATGCAAAAAAAAACACACAAAGATAAAAT
23308124 C
1 C
23308125 TATGTACACC
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
42 18 0.44
43 23 0.56
ACGTcount: A:0.66, C:0.14, G:0.08, T:0.12
Consensus pattern (43 bp):
CAAAAATAGAAAATATGCAAAAAAAAACACACAAAGATAAAAT
Found at i:23308107 original size:21 final size:22
Alignment explanation
Indices: 23308040--23308107 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 22
23308030 AAAATTGTGC
23308040 AAAAATAGAAAATATGCAAACA
1 AAAAATAGAAAATATGCAAACA
* * *
23308062 AAACACACAAAGATA---AAATC-
1 AAAAATAGAAA-ATATGCAAA-CA
23308082 AAAAATAGAAAATATGCAAA-A
1 AAAAATAGAAAATATGCAAACA
23308103 AAAAA
1 AAAAA
23308108 CACACAAAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 13
0.64 0.11 0.25
Matches are distributed among these distances:
19 3 0.09
20 11 0.32
21 6 0.18
22 11 0.32
23 3 0.09
ACGTcount: A:0.71, C:0.10, G:0.07, T:0.12
Consensus pattern (22 bp):
AAAAATAGAAAATATGCAAACA
Found at i:23315009 original size:24 final size:24
Alignment explanation
Indices: 23314982--23315029 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
23314972 AGACAAGCTT
*
23314982 CCATGTAGGTTGTGGACGAAGCCA
1 CCATGTAGGTTGTAGACGAAGCCA
23315006 CCATGTAGGTTGTAGACGAAGCCA
1 CCATGTAGGTTGTAGACGAAGCCA
23315030 TCAATTATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (24 bp):
CCATGTAGGTTGTAGACGAAGCCA
Found at i:23320791 original size:27 final size:27
Alignment explanation
Indices: 23320752--23321002 Score: 203
Period size: 27 Copynumber: 9.3 Consensus size: 27
23320742 ATTCGTGGGC
*
23320752 AAATGACTA-AAATACCCTCGAAGGGAA
1 AAATGAC-AGAAATACCCTCGAAGGGTA
* *
23320779 AAATGACAGAAATACCCTCAAAAGGTA
1 AAATGACAGAAATACCCTCGAAGGGTA
* * *
23320806 AAATAACCA-AAATACCCTCAAAGGGAA
1 AAATGA-CAGAAATACCCTCGAAGGGTA
** *
23320833 AAATGATTGAAATACCC-CTGAAGGGTG
1 AAATGACAGAAATACCCTC-GAAGGGTA
* * *
23320860 AAATGACCA-AAACACTCTCAAAGGGTA
1 AAATGA-CAGAAATACCCTCGAAGGGTA
23320887 AAATGACCA-AAATACCCTCGAAGGGTA
1 AAATGA-CAGAAATACCCTCGAAGGGTA
*
23320914 AAACGATC-GAAATACCC-CTGAAGGGTA
1 AAATGA-CAGAAATACCCTC-GAAGGGTA
* * *
23320941 AAATGACTGAAATACCCCCGAAGGATAA
1 AAATGACAGAAATACCCTCGAAGGGT-A
**
23320969 AAATGATTGAAATACCCTC-ATAGGGTA
1 AAATGACAGAAATACCCTCGA-AGGGTA
23320996 AAATGAC
1 AAATGAC
23321003 TGTTATACCT
Statistics
Matches: 183, Mismatches: 29, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
26 4 0.02
27 153 0.84
28 26 0.14
ACGTcount: A:0.46, C:0.20, G:0.18, T:0.16
Consensus pattern (27 bp):
AAATGACAGAAATACCCTCGAAGGGTA
Found at i:23320845 original size:54 final size:54
Alignment explanation
Indices: 23320752--23321004 Score: 240
Period size: 54 Copynumber: 4.7 Consensus size: 54
23320742 ATTCGTGGGC
* * * * *
23320752 AAATGACTAAAATACCCTCGAAGGGAAAAATGACAGAAATACCCTCAAAAGGTA
1 AAATGACCAAAATACCCTCAAAGGGAAAAATGACTGAAATACCCTCGAAGGGTA
* * *
23320806 AAATAACCAAAATACCCTCAAAGGGAAAAATGATTGAAATACCC-CTGAAGGGTG
1 AAATGACCAAAATACCCTCAAAGGGAAAAATGACTGAAATACCCTC-GAAGGGTA
* * * **
23320860 AAATGACCAAAACACTCTCAAAGGGTAAAATGACCAAAATACCCTCGAAGGGTA
1 AAATGACCAAAATACCCTCAAAGGGAAAAATGACTGAAATACCCTCGAAGGGTA
* * * * * * *
23320914 AAACGATCGAAATACCC-CTGAAGGGTAAAATGACTGAAATACCCCCGAAGGATAA
1 AAATGACCAAAATACCCTC-AAAGGGAAAAATGACTGAAATACCCTCGAAGGGT-A
*** * *
23320969 AAATGATTGAAATACCCTCATAGGGTAAAATGACTG
1 AAATGACCAAAATACCCTCAAAGGGAAAAATGACTG
23321005 TTATACCTTT
Statistics
Matches: 164, Mismatches: 30, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
53 2 0.01
54 129 0.79
55 32 0.20
56 1 0.01
ACGTcount: A:0.46, C:0.19, G:0.18, T:0.17
Consensus pattern (54 bp):
AAATGACCAAAATACCCTCAAAGGGAAAAATGACTGAAATACCCTCGAAGGGTA
Found at i:23320887 original size:81 final size:82
Alignment explanation
Indices: 23320752--23320947 Score: 254
Period size: 81 Copynumber: 2.4 Consensus size: 82
23320742 ATTCGTGGGC
* * * *
23320752 AAATGACTAAAATA-CCCTCGAAGGGAAAAATGA-CAGAAATACCCTCAAAAGGTAAAATAACCA
1 AAATGATTGAAATACCCCT-GAAGGGTAAAATGACCAGAAACACCCTCAAAAGGTAAAATAACCA
23320815 AAATACCCTCAAAGGGAA
65 AAATACCCTCAAAGGGAA
* * * *
23320833 AAATGATTGAAATACCCCTGAAGGGTGAAATGACCA-AAACACTCTCAAAGGGTAAAATGACCAA
1 AAATGATTGAAATACCCCTGAAGGGTAAAATGACCAGAAACACCCTCAAAAGGTAAAATAACCAA
* *
23320897 AATACCCTCGAAGGGTA
66 AATACCCTCAAAGGGAA
* *
23320914 AAACGATCGAAATACCCCTGAAGGGTAAAATGAC
1 AAATGATTGAAATACCCCTGAAGGGTAAAATGAC
23320948 TGAAATACCC
Statistics
Matches: 100, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
81 94 0.94
82 6 0.06
ACGTcount: A:0.47, C:0.20, G:0.18, T:0.15
Consensus pattern (82 bp):
AAATGATTGAAATACCCCTGAAGGGTAAAATGACCAGAAACACCCTCAAAAGGTAAAATAACCAA
AATACCCTCAAAGGGAA
Found at i:23320970 original size:81 final size:79
Alignment explanation
Indices: 23320761--23320998 Score: 246
Period size: 81 Copynumber: 2.9 Consensus size: 79
23320751 CAAATGACTA
* * *
23320761 AAATA-CCCTCGAAGGGAAAAATGACAGAAATACCCTCAAAAGGTAAAATAACCAAAATACCCTC
1 AAATACCCCT-GAAGGGTAAAATGACAGAAATACCC-CCAAAGGTAAAATGACCAAAATACCCTC
* * *
23320825 AAAGGGAAAAATGATTG
64 -AAGGGTAAAACGATCG
* * * *
23320842 AAATACCCCTGAAGGGTGAAATGACCA-AAACACTCTCAAAGGGTAAAATGACCAAAATACCCTC
1 AAATACCCCTGAAGGGTAAAATGA-CAGAAATACCCCCAAA-GGTAAAATGACCAAAATACCCTC
23320906 GAAGGGTAAAACGATCG
64 -AAGGGTAAAACGATCG
* * ***
23320923 AAATACCCCTGAAGGGTAAAATGACTGAAATACCCCCGAAGGATAAAAATGATTGAAATACCCTC
1 AAATACCCCTGAAGGGTAAAATGACAGAAATACCCCCAAAGG-T-AAAATGACCAAAATACCCTC
23320988 ATAGGGTAAAA
64 A-AGGGTAAAA
23320999 TGACTGTTAT
Statistics
Matches: 130, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
80 6 0.05
81 92 0.71
82 32 0.25
ACGTcount: A:0.46, C:0.20, G:0.18, T:0.16
Consensus pattern (79 bp):
AAATACCCCTGAAGGGTAAAATGACAGAAATACCCCCAAAGGTAAAATGACCAAAATACCCTCAA
GGGTAAAACGATCG
Found at i:23321422 original size:28 final size:28
Alignment explanation
Indices: 23321335--23321414 Score: 115
Period size: 28 Copynumber: 2.9 Consensus size: 28
23321325 ACTGTATTGT
*
23321335 ACTGCTACTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
23321363 ACTGTTACTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
** * *
23321391 ACTGTTGTTGTATAGGGCTCAGGC
1 ACTGTTACTGTATTGGGCTAAGGC
23321415 TCAGACTGCA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.29
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:23326935 original size:13 final size:13
Alignment explanation
Indices: 23326917--23326941 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23326907 AACTTATTTT
23326917 CTATCCCAAAATG
1 CTATCCCAAAATG
23326930 CTATCCCAAAAT
1 CTATCCCAAAAT
23326942 TCAAGCCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.32, G:0.04, T:0.24
Consensus pattern (13 bp):
CTATCCCAAAATG
Found at i:23327525 original size:40 final size:40
Alignment explanation
Indices: 23327481--23327655 Score: 163
Period size: 40 Copynumber: 4.4 Consensus size: 40
23327471 ACACTGGCCC
* * *
23327481 AAAGCCTGCTAGGCACTAAGCCAGATA-ATTACACCGGCAT
1 AAAGCCTGCTAGGCATTAAGCCCGATATA-TACACAGGCAT
* * *
23327521 AAAGCTTGCTAGGCATTAAGCCCGATATATACACTGGCAC
1 AAAGCCTGCTAGGCATTAAGCCCGATATATACACAGGCAT
* * * *
23327561 GAAGCCCGCTAGGAATTAAGCCCGATATATACACATGCAT
1 AAAGCCTGCTAGGCATTAAGCCCGATATATACACAGGCAT
* ** * * * *
23327601 AAAGCCTGCTATGTTTTAAGCCCAATAGATACACCGGCAC
1 AAAGCCTGCTAGGCATTAAGCCCGATATATACACAGGCAT
* *
23327641 GAATCCTGCTAGGCA
1 AAAGCCTGCTAGGCA
23327656 CAAGGCTCGA
Statistics
Matches: 107, Mismatches: 27, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
40 106 0.99
41 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (40 bp):
AAAGCCTGCTAGGCATTAAGCCCGATATATACACAGGCAT
Found at i:23327603 original size:80 final size:80
Alignment explanation
Indices: 23327470--23327653 Score: 208
Period size: 80 Copynumber: 2.3 Consensus size: 80
23327460 TACAAATTTT
* * * * *
23327470 TACACTGGCCCAAAGCCTGCTAGGCACTAAGCCAGATAATTACACCGGCATAAAGCTTGCTAGGC
1 TACACTGGCACGAAGCCTGCTAGGAACTAAGCCAGATAATTACACAGGCATAAAGCCTGCTAGGC
* *
23327535 ATTAAGCCCGATATA
66 ATTAAGCCCAATAGA
* * * * *
23327550 TACACTGGCACGAAGCCCGCTAGGAATTAAGCCCGAT-ATATACACATGCATAAAGCCTGCTATG
1 TACACTGGCACGAAGCCTGCTAGGAACTAAGCCAGATAAT-TACACAGGCATAAAGCCTGCTAGG
**
23327614 TTTTAAGCCCAATAGA
65 CATTAAGCCCAATAGA
* *
23327630 TACACCGGCACGAATCCTGCTAGG
1 TACACTGGCACGAAGCCTGCTAGG
23327654 CACAAGGCTC
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (80 bp):
TACACTGGCACGAAGCCTGCTAGGAACTAAGCCAGATAATTACACAGGCATAAAGCCTGCTAGGC
ATTAAGCCCAATAGA
Found at i:23328358 original size:16 final size:16
Alignment explanation
Indices: 23328337--23328371 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
23328327 AGTCCTCGTA
23328337 ATTTTA-TCACTTTAAC
1 ATTTTAGTC-CTTTAAC
23328353 ATTTTAGTCCTTTAAC
1 ATTTTAGTCCTTTAAC
23328369 ATT
1 ATT
23328372 AAAAAATACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.29, C:0.17, G:0.03, T:0.51
Consensus pattern (16 bp):
ATTTTAGTCCTTTAAC
Found at i:23330098 original size:30 final size:30
Alignment explanation
Indices: 23330064--23330124 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
23330054 TTTACATCCC
23330064 TTTTACACATAACTGTAGCTTGTTTAATAG
1 TTTTACACATAACTGTAGCTTGTTTAATAG
23330094 TTTTACACATAACTGTAGCTTGTTTAATAG
1 TTTTACACATAACTGTAGCTTGTTTAATAG
23330124 T
1 T
23330125 AAATCAAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (30 bp):
TTTTACACATAACTGTAGCTTGTTTAATAG
Found at i:23334930 original size:57 final size:59
Alignment explanation
Indices: 23334848--23334968 Score: 167
Period size: 57 Copynumber: 2.1 Consensus size: 59
23334838 ATTTTTAGGT
* *
23334848 CATTTTCATTTTTCATTTTGTAGAAAACCACATTCATTTCCAAATGGTTT-C-ATTTCTC
1 CATTTTCATTTTTCATTTTGGAGAAAACCACAATCATTTCCAAAT-GTTTCCTATTTCTC
**
23334906 CATTTTCA-TTTTCATTTTGGAGAAAACCTTAATCATTTCCAAATGTTTCCTATTTCTC
1 CATTTTCATTTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGTTTCCTATTTCTC
*
23334964 AATTT
1 CATTT
23334969 CACTATTTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
56 4 0.07
57 33 0.59
58 19 0.34
ACGTcount: A:0.26, C:0.20, G:0.07, T:0.47
Consensus pattern (59 bp):
CATTTTCATTTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGTTTCCTATTTCTC
Found at i:23338045 original size:22 final size:22
Alignment explanation
Indices: 23338020--23338066 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
23338010 CTAAGAGTCG
* * *
23338020 TAAACAGGATAGCTATAAGCTA
1 TAAACAGAATAGCTACAAGCCA
*
23338042 TAAACAGAATTGCTACAAGCCA
1 TAAACAGAATAGCTACAAGCCA
23338064 TAA
1 TAA
23338067 GTACAGTAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.17, G:0.15, T:0.21
Consensus pattern (22 bp):
TAAACAGAATAGCTACAAGCCA
Found at i:23338113 original size:32 final size:31
Alignment explanation
Indices: 23338058--23338188 Score: 95
Period size: 32 Copynumber: 4.1 Consensus size: 31
23338048 GAATTGCTAC
*
23338058 AAGCCATAAGTACAGTAATATGATTGGCACA
1 AAGCCATAAGTACAGTAATATGATCGGCACA
* *
23338089 AAGCCATTAGTAGCAGTGATATGATCGGCACA
1 AAGCCATAAGTA-CAGTAATATGATCGGCACA
* * * * * *
23338121 CAGCCACCAA-TAACGGTAATATGATTGACATA
1 AAGCCA-TAAGT-ACAGTAATATGATCGGCACA
** *
23338153 AAGCCATCGGTA-ACGATAATATGATAGGCACA
1 AAGCCATAAGTACA-G-TAATATGATCGGCACA
23338185 AAGC
1 AAGC
23338189 TATCAGTAGA
Statistics
Matches: 75, Mismatches: 19, Indels: 11
0.71 0.18 0.10
Matches are distributed among these distances:
31 13 0.17
32 60 0.80
33 2 0.03
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (31 bp):
AAGCCATAAGTACAGTAATATGATCGGCACA
Found at i:23338399 original size:24 final size:24
Alignment explanation
Indices: 23338368--23338473 Score: 131
Period size: 24 Copynumber: 4.4 Consensus size: 24
23338358 CCATGCTCAG
23338368 AATCAGTCATACAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
* *
23338392 AATCAGTCATACCAATCACAGATA
1 AATCAGTCATACAAATCACAGACA
**
23338416 AATCAGTCATTTAAATCACAGACA
1 AATCAGTCATACAAATCACAGACA
** * *
23338440 AATCAGTCATTTACATCACGGACA
1 AATCAGTCATACAAATCACAGACA
*
23338464 AATCAATCAT
1 AATCAGTCAT
23338474 TTACACTCGA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.45, C:0.24, G:0.08, T:0.23
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAGACA
Found at i:23338538 original size:27 final size:27
Alignment explanation
Indices: 23338494--23338721 Score: 167
Period size: 27 Copynumber: 8.5 Consensus size: 27
23338484 GGGGTAATAT
*
23338494 AGTCA-TTTACCCTCTAGGGGCATTAC
1 AGTCATTTTACCCTATAGGGGCATTAC
* * * *
23338520 GGTCATTTTACCTTATAGGGGTATTTC
1 AGTCATTTTACCCTATAGGGGCATTAC
* * *
23338547 AGTCATTTAACCCTATGGGGGTATTAC
1 AGTCATTTTACCCTATAGGGGCATTAC
* * * *
23338574 GGTCATTTTAACCTACAGGGGCGTTAC
1 AGTCATTTTACCCTATAGGGGCATTAC
* * * *
23338601 AGTCATTTTACCTTACAGGGGAATTTC
1 AGTCATTTTACCCTATAGGGGCATTAC
* * *
23338628 AGTCATTTTACCCTA-CGAGGGTATTTC
1 AGTCATTTTACCCTATAG-GGGCATTAC
* * *
23338655 AGTCATTTTACCC-ATCGAGGGTATTTC
1 AGTCATTTTACCCTATAG-GGGCATTAC
* * * *
23338682 GGCCATTTTACCC-ATCGAGGGCATTTC
1 AGTCATTTTACCCTATAG-GGGCATTAC
23338709 AGTCATTTTACCC
1 AGTCATTTTACCC
23338722 ATTGGGGGTA
Statistics
Matches: 168, Mismatches: 31, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
26 6 0.04
27 162 0.96
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
AGTCATTTTACCCTATAGGGGCATTAC
Found at i:23338722 original size:27 final size:27
Alignment explanation
Indices: 23338521--23338800 Score: 225
Period size: 27 Copynumber: 10.4 Consensus size: 27
23338511 GGGCATTACG
* *
23338521 GTCATTTTACCTTATAG-GGGTATTTCA
1 GTCATTTTACC-CATCGAGGGTATTTCA
* * * *
23338548 GTCATTTAACCCTAT-GGGGGTATTACG
1 GTCATTTTACCC-ATCGAGGGTATTTCA
* ** *
23338575 GTCATTTTAACC-TAC-AGGGGCGTTACA
1 GTCATTTTACCCAT-CGA-GGGTATTTCA
* *
23338602 GTCATTTTA-CCTTAC-AGGGGAATTTCA
1 GTCATTTTACCCAT-CGA-GGGTATTTCA
23338629 GTCATTTTACCC-TACGAGGGTATTTCA
1 GTCATTTTACCCAT-CGAGGGTATTTCA
*
23338656 GTCATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCCATCGAGGGTATTTCA
* *
23338683 GCCATTTTACCCATCGAGGGCATTTCA
1 GTCATTTTACCCATCGAGGGTATTTCA
* * *
23338710 GTCATTTTACCCATTGGGGGTATTT-T
1 GTCATTTTACCCATCGAGGGTATTTCA
* *
23338736 GATAATTTTACCCATCGAGGGTATTTTA
1 G-TCATTTTACCCATCGAGGGTATTTCA
* *
23338764 GTTATTTTACCCATCGAGGGTATTTCG
1 GTCATTTTACCCATCGAGGGTATTTCA
*
23338791 GTTATTTTAC
1 GTCATTTTAC
23338801 AAATATTAGG
Statistics
Matches: 212, Mismatches: 30, Indels: 22
0.80 0.11 0.08
Matches are distributed among these distances:
25 1 0.00
26 4 0.02
27 202 0.95
28 5 0.02
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCATCGAGGGTATTTCA
Found at i:23338969 original size:27 final size:27
Alignment explanation
Indices: 23338909--23339161 Score: 321
Period size: 27 Copynumber: 9.4 Consensus size: 27
23338899 CCCCAAAATA
*
23338909 GGTAAAATGATCGAAATACCCT-ATAG
1 GGTAAAATGACCGAAATACCCTCATAG
*
23338935 GGTAAAATGACCAAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCTCATAG
* *
23338962 GATAAAATGACCGAAATACCCTCATAA
1 GGTAAAATGACCGAAATACCCTCATAG
* *
23338989 AGTAAAATGACCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCTCATAG
*
23339016 GGTAAAATGATCGAAATA-CCTCCATAG
1 GGTAAAATGACCGAAATACCCT-CATAG
** *
23339043 GGTAAAATGACTAAAATACCTTCATAG
1 GGTAAAATGACCGAAATACCCTCATAG
** *
23339070 GGTAAAATGATAGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCTCATAG
* *
23339097 GGTAGAATGATCGAAATACCCTCATAG
1 GGTAAAATGACCGAAATACCCTCATAG
** *
23339124 GGTAAAATGACTAAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCTCATAG
23339151 GGTAAAATGAC
1 GGTAAAATGAC
23339162 TGTTATACCC
Statistics
Matches: 195, Mismatches: 29, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
26 22 0.11
27 171 0.88
28 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCTCATAG
Found at i:23339049 original size:81 final size:81
Alignment explanation
Indices: 23338909--23339161 Score: 357
Period size: 81 Copynumber: 3.1 Consensus size: 81
23338899 CCCCAAAATA
* * * * *
23338909 GGTAAAATGATCGAAATA-CCCTATAGGGTAAAATGACCAAAATACCCTCATAGGATAAAATGAC
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGAC
** *
23338973 CGAAATACCCTCATAA
66 TAAAATACCCTCATAG
*
23338989 AGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATA-CCTCCATAGGGTAAAATGA
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCT-CATAGGGTAAAATGA
*
23339053 CTAAAATACCTTCATAG
65 CTAAAATACCCTCATAG
** *
23339070 GGTAAAATGATAGAAATACCCCCATAGGGTAGAATGATCGAAATACCCTCATAGGGTAAAATGAC
1 GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGAC
*
23339135 TAAAATACCCCCATAG
66 TAAAATACCCTCATAG
23339151 GGTAAAATGAC
1 GGTAAAATGAC
23339162 TGTTATACCC
Statistics
Matches: 153, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
80 19 0.12
81 131 0.86
82 3 0.02
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.20
Consensus pattern (81 bp):
GGTAAAATGACCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCTCATAGGGTAAAATGAC
TAAAATACCCTCATAG
Found at i:23343694 original size:34 final size:34
Alignment explanation
Indices: 23343651--23343717 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
23343641 TAATTAAGTA
23343651 AAATTAAACTAAAAGAAAAACAAAAAGGTTGTCG
1 AAATTAAACTAAAAGAAAAACAAAAAGGTTGTCG
*
23343685 AAATTAAACTAAAAGAAAAACAAATAGGTTGTC
1 AAATTAAACTAAAAGAAAAACAAAAAGGTTGTC
23343718 ATCTTCTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.58, C:0.09, G:0.13, T:0.19
Consensus pattern (34 bp):
AAATTAAACTAAAAGAAAAACAAAAAGGTTGTCG
Found at i:23347262 original size:23 final size:23
Alignment explanation
Indices: 23347235--23347285 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
23347225 TTTCTAAGAT
23347235 TAGTGACTCCCAAATCAATGACC
1 TAGTGACTCCCAAATCAATGACC
* *
23347258 TAGTGACTCTCGAATCAATGACC
1 TAGTGACTCCCAAATCAATGACC
23347281 TAGTG
1 TAGTG
23347286 GTCTATTGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (23 bp):
TAGTGACTCCCAAATCAATGACC
Found at i:23352510 original size:79 final size:82
Alignment explanation
Indices: 23352399--23352583 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
23352389 GCTACTCGTT
* * *
23352399 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
23352462 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
23352479 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
23352542 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
23352559 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23352584 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:23352583 original size:40 final size:40
Alignment explanation
Indices: 23352380--23352583 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
23352370 CGAAATTTAA
** *
23352380 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
23352420 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
23352460 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23352499 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
23352539 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
23352579 CCGGA
1 CCGGA
23352584 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:23373488 original size:18 final size:18
Alignment explanation
Indices: 23373465--23373499 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
23373455 GTGGAGATGA
*
23373465 AGATGAAGATAACGGTGG
1 AGATGAAGATAAAGGTGG
23373483 AGATGAAGATAAAGGTG
1 AGATGAAGATAAAGGTG
23373500 ACAATGGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.37, T:0.17
Consensus pattern (18 bp):
AGATGAAGATAAAGGTGG
Found at i:23373507 original size:24 final size:24
Alignment explanation
Indices: 23373456--23373510 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
23373446 AAGTCGAGGG
* **
23373456 TGGAGATGAAGATGAAGATAACGG
1 TGGAGATGAAGATAAAGATAACAA
* *
23373480 TGGAGATGAAGATAAAGGTGACAA
1 TGGAGATGAAGATAAAGATAACAA
23373504 TGGAGAT
1 TGGAGAT
23373511 AAAAATGAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.04, G:0.36, T:0.18
Consensus pattern (24 bp):
TGGAGATGAAGATAAAGATAACAA
Found at i:23379283 original size:43 final size:43
Alignment explanation
Indices: 23379217--23379464 Score: 294
Period size: 43 Copynumber: 5.9 Consensus size: 43
23379207 CCTACGCAAT
** *
23379217 TATACTGGCATGCA-AGTGCATCATCGGATAAACTAAAGAAAA
1 TATACTGGCACACACAGTGCATCATCGGATAAACTGAAGAAAA
* * * * *
23379259 TATACTAGCACACACACTGCATCATCAGATATA-TCGAAGCAAA
1 TATACTGGCACACACAGTGCATCATCGGATAAACT-GAAGAAAA
* * * *
23379302 TATATTGGCACACATAGTGCATCATCGGATATACCGAAG----
1 TATACTGGCACACACAGTGCATCATCGGATAAACTGAAGAAAA
* * *
23379341 -CTACTGGCACACACAGTGCATCATCGGATATACTGAAGCAAA
1 TATACTGGCACACACAGTGCATCATCGGATAAACTGAAGAAAA
*
23379383 TATACTGGCACACACAGTGCATCATCGGATAAACTGAACAAAA
1 TATACTGGCACACACAGTGCATCATCGGATAAACTGAAGAAAA
23379426 TATACTGGCACACACAGTGCATCATCGGATAAACTGAAG
1 TATACTGGCACACACAGTGCATCATCGGATAAACTGAAG
23379465 TATAACCCGT
Statistics
Matches: 175, Mismatches: 23, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
38 34 0.19
42 12 0.07
43 129 0.74
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.21
Consensus pattern (43 bp):
TATACTGGCACACACAGTGCATCATCGGATAAACTGAAGAAAA
Found at i:23379363 original size:81 final size:81
Alignment explanation
Indices: 23379261--23379413 Score: 245
Period size: 81 Copynumber: 1.9 Consensus size: 81
23379251 AAAGAAAATA
* *
23379261 TACTAGCACACACACTGCATCATCAGATATA-TCGAAGCAAATATATTGGCACACATAGTGCATC
1 TACTAGCACACACACTGCATCATCAGATATACT-GAAGCAAATATACTGGCACACACAGTGCATC
23379325 ATCGGATATACCGAAGC
65 ATCGGATATACCGAAGC
* * *
23379342 TACTGGCACACACAGTGCATCATCGGATATACTGAAGCAAATATACTGGCACACACAGTGCATCA
1 TACTAGCACACACACTGCATCATCAGATATACTGAAGCAAATATACTGGCACACACAGTGCATCA
23379407 TCGGATA
66 TCGGATA
23379414 AACTGAACAA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
81 65 0.98
82 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.22
Consensus pattern (81 bp):
TACTAGCACACACACTGCATCATCAGATATACTGAAGCAAATATACTGGCACACACAGTGCATCA
TCGGATATACCGAAGC
Found at i:23379384 original size:124 final size:124
Alignment explanation
Indices: 23379231--23379456 Score: 339
Period size: 124 Copynumber: 1.8 Consensus size: 124
23379221 CTGGCATGCA
*
23379231 AGTGCATCATCGGATAAACTAAAGAAAATATACTAGCACACACACTGCATCATCAGATATA-TCG
1 AGTGCATCATCGGATAAACTAAAGAAAATATACTAGCACACACACTGCATCATCAGATAAACT-G
* *
23379295 AAGC-AAATATATTGGCACACATAGTGCATCATCGGATATACCGAAGCTACTGGCACACAC
65 AA-CAAAATATACTGGCACACACAGTGCATCATCGGATATACCGAAGCTACTGGCACACAC
* * * * * *
23379355 AGTGCATCATCGGATATACTGAAGCAAATATACTGGCACACACAGTGCATCATCGGATAAACTGA
1 AGTGCATCATCGGATAAACTAAAGAAAATATACTAGCACACACACTGCATCATCAGATAAACTGA
23379420 ACAAAATATACTGGCACACACAGTGCATCATCGGATA
66 ACAAAATATACTGGCACACACAGTGCATCATCGGATA
23379457 AACTGAAGTA
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
123 1 0.01
124 89 0.98
125 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.21
Consensus pattern (124 bp):
AGTGCATCATCGGATAAACTAAAGAAAATATACTAGCACACACACTGCATCATCAGATAAACTGA
ACAAAATATACTGGCACACACAGTGCATCATCGGATATACCGAAGCTACTGGCACACAC
Found at i:23382745 original size:33 final size:34
Alignment explanation
Indices: 23382700--23382766 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
23382690 ACAGATAATC
* * *
23382700 TCAGTTTGGGCCTAA-GCCTTTTCAGTATCAGTA
1 TCAGTTTAGGCCTAATCCCATTTCAGTATCAGTA
23382733 TCAGTTTAGGCCTAATCCCATTTCAGTATCAGTA
1 TCAGTTTAGGCCTAATCCCATTTCAGTATCAGTA
23382767 AGCATTAGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 14 0.47
34 16 0.53
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (34 bp):
TCAGTTTAGGCCTAATCCCATTTCAGTATCAGTA
Found at i:23384179 original size:20 final size:20
Alignment explanation
Indices: 23384131--23384179 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
23384121 ATTTTTGATA
23384131 AACTTCCC-CCCAATCCCCT
1 AACTTCCCTCCCAATCCCCT
*
23384150 AACTT-TCTCCCATAT-CCCT
1 AACTTCCCTCCCA-ATCCCCT
23384169 AACTTCCCTCC
1 AACTTCCCTCC
23384180 TAAAAAATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 1 0.04
19 18 0.72
20 6 0.24
ACGTcount: A:0.20, C:0.51, G:0.00, T:0.29
Consensus pattern (20 bp):
AACTTCCCTCCCAATCCCCT
Found at i:23391569 original size:50 final size:49
Alignment explanation
Indices: 23391509--23391637 Score: 125
Period size: 50 Copynumber: 2.6 Consensus size: 49
23391499 TTGTGAGAGG
* * *
23391509 TCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC-
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCG-CAGGA-AACA
* * * * * ** **
23391559 TCTCATGTAAGACCATATCTGAGATATGACATTTGCAGTGCAGGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGCAGGAAACA
23391608 TCCCATGTAAGACCATGTCTGGGACATGGC
1 TCCCATGTAAGACCATGTCTGGGACATGGC
23391638 TTTGGAATGT
Statistics
Matches: 61, Mismatches: 17, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
48 3 0.05
49 28 0.46
50 30 0.49
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.22
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGCAGGAAACA
Found at i:23402341 original size:50 final size:49
Alignment explanation
Indices: 23402281--23402409 Score: 125
Period size: 50 Copynumber: 2.6 Consensus size: 49
23402271 TTGTGAGAGG
* * *
23402281 TCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC-
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCG-CAGGA-AACA
* * * * * ** **
23402331 TCTCATGTAAGACCATATCTGAGATATGACATTTGCAGTGCAGGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGCAGGAAACA
23402380 TCCCATGTAAGACCATGTCTGGGACATGGC
1 TCCCATGTAAGACCATGTCTGGGACATGGC
23402410 TTTGGAATGT
Statistics
Matches: 61, Mismatches: 17, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
48 3 0.05
49 28 0.46
50 30 0.49
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.22
Consensus pattern (49 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGCAGGAAACA
Found at i:23409858 original size:50 final size:50
Alignment explanation
Indices: 23409778--23409914 Score: 206
Period size: 50 Copynumber: 2.7 Consensus size: 50
23409768 ACTGAGGTTG
*
23409778 TGAGAGGTCCCACGTAAGACCATG-CATGGGACATGGCGTTGGTAT-CGAGA
1 TGAGAGGTCCCTCGTAAGACCATGTC-TGGGACATGGCGTTGGT-TCCGAGA
23409828 TGAGAGGTCCCTCGTAAGACCATGTCTGGGACATGGCGTTGGTTCCGAGA
1 TGAGAGGTCCCTCGTAAGACCATGTCTGGGACATGGCGTTGGTTCCGAGA
* * *
23409878 GGAGAGGTCCCTTGTAAGACCATGTCTAGGACATGGC
1 TGAGAGGTCCCTCGTAAGACCATGTCTGGGACATGGC
23409915 ATGGGCACCG
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
49 1 0.01
50 79 0.98
51 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.34, T:0.22
Consensus pattern (50 bp):
TGAGAGGTCCCTCGTAAGACCATGTCTGGGACATGGCGTTGGTTCCGAGA
Found at i:23409944 original size:50 final size:49
Alignment explanation
Indices: 23409890--23410012 Score: 142
Period size: 49 Copynumber: 2.5 Consensus size: 49
23409880 AGAGGTCCCT
* * *
23409890 TGTAAGACCATGTCTAGGACATGGCATGGGCACCG-ATATGAGAAC-TCTCA
1 TGTAAGACCATGTCTGGGACATGGCATGGGCA--GTACAGGA-AACATCTCA
* * **
23409940 TGTAAGACCATATCTGGGATATGGCATTTGCAGTACAGGAAACATCTCA
1 TGTAAGACCATGTCTGGGACATGGCATGGGCAGTACAGGAAACATCTCA
23409989 TGTAAGACCATGTCTGGGACATGG
1 TGTAAGACCATGTCTGGGACATGG
23410013 TTTTGGCATG
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
48 4 0.06
49 31 0.50
50 27 0.44
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (49 bp):
TGTAAGACCATGTCTGGGACATGGCATGGGCAGTACAGGAAACATCTCA
Found at i:23410249 original size:20 final size:20
Alignment explanation
Indices: 23410224--23410262 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
23410214 TGAGTTATTT
23410224 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
23410244 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
23410263 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:23416118 original size:20 final size:20
Alignment explanation
Indices: 23416050--23416118 Score: 50
Period size: 20 Copynumber: 3.4 Consensus size: 20
23416040 TTTCTTTGCA
*
23416050 AAATATAAGTATCGATATTT
1 AAATAAAAGTATCGATATTT
** * **
23416070 ATTTTAGGGTATCGATATTT
1 AAATAAAAGTATCGATATTT
*
23416090 -TATGAAAAAGTATCGATATTT
1 AAAT--AAAAGTATCGATATTT
23416111 AAATAAAA
1 AAATAAAA
23416119 ATTGATACCA
Statistics
Matches: 35, Mismatches: 11, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
19 2 0.06
20 18 0.51
21 13 0.37
22 2 0.06
ACGTcount: A:0.43, C:0.04, G:0.13, T:0.39
Consensus pattern (20 bp):
AAATAAAAGTATCGATATTT
Found at i:23431190 original size:22 final size:21
Alignment explanation
Indices: 23431128--23431190 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 21
23431118 GGAGGAAGTG
* *
23431128 TATGGCTTGTAGCCGTTCTGT
1 TATGGCTTTTAGTCGTTCTGT
* *
23431149 TCAAGGCTTATT-GTCTTTCTGCT
1 T-ATGGCTT-TTAGTCGTTCTG-T
23431172 TATGGCTTTTAGTCGTTCT
1 TATGGCTTTTAGTCGTTCT
23431191 ATTAACTGGC
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
21 3 0.09
22 26 0.81
23 3 0.09
ACGTcount: A:0.11, C:0.19, G:0.22, T:0.48
Consensus pattern (21 bp):
TATGGCTTTTAGTCGTTCTGT
Found at i:23431333 original size:37 final size:37
Alignment explanation
Indices: 23431292--23431374 Score: 157
Period size: 37 Copynumber: 2.2 Consensus size: 37
23431282 GCTAAGCTTA
*
23431292 GTGTGTTGGCTAGGTGGGTCATTTTTATCCCCACATG
1 GTGTGTTGGCTAGGTGGGTCAATTTTATCCCCACATG
23431329 GTGTGTTGGCTAGGTGGGTCAATTTTATCCCCACATG
1 GTGTGTTGGCTAGGTGGGTCAATTTTATCCCCACATG
23431366 GTGTGTTGG
1 GTGTGTTGG
23431375 TTGGTACGGG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.13, C:0.17, G:0.33, T:0.37
Consensus pattern (37 bp):
GTGTGTTGGCTAGGTGGGTCAATTTTATCCCCACATG
Found at i:23434946 original size:120 final size:118
Alignment explanation
Indices: 23434671--23434963 Score: 333
Period size: 117 Copynumber: 2.5 Consensus size: 118
23434661 CAAATAGACG
* * * * *
23434671 TTTGTTTTTTATTTACTTAACAAATGGTCCCATTGT-CTTATTTTTTTGAGATTTTGGTATTGTA
1 TTTGTTTTTTATTTACTTAACAAATAGTCTCATTGTGTTTATTTTTTTGAGAGTTTGATATTGTA
*
23434735 GAAAGGATGTTAGGAAGAAAGGAAGCAAGTATCTTTTCTTTTAATATTGTTTT
66 GAAAGGATGTTAGGAAGAAAGGAAGCAAGTATCTTTTCTTTTAACATTGTTTT
* * *
23434788 TTTGTCTTTTATTTACTTAACAAATAGTTTCATTGTGTTTATTTTTTTGAGAGTTT-ATTTTGTA
1 TTTGTTTTTTATTTACTTAACAAATAGTCTCATTGTGTTTATTTTTTTGAGAGTTTGATATTGTA
* * * * *
23434852 GGAAGGGTGTTTGGAAGAAAGGAAGCAAGTATGTTTGTGTTTTTTTTAACA-T-TTTT
66 GAAAGGATGTTAGGAAGAAAGGAAGCAAGTA----TCT-TTTCTTTTAACATTGTTTT
* * * * * *
23434908 TTTGTTTTTTATGTACTTAATAGATTGTCTCATTGTGTTGAATTTTTTGAGAGTTT
1 TTTGTTTTTTATTTACTTAACAAATAGTCTCATTGTGTTTATTTTTTTGAGAGTTT
23434964 TAATTTTTAT
Statistics
Matches: 148, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
117 66 0.45
118 17 0.11
120 52 0.35
121 3 0.02
122 10 0.07
ACGTcount: A:0.24, C:0.06, G:0.19, T:0.51
Consensus pattern (118 bp):
TTTGTTTTTTATTTACTTAACAAATAGTCTCATTGTGTTTATTTTTTTGAGAGTTTGATATTGTA
GAAAGGATGTTAGGAAGAAAGGAAGCAAGTATCTTTTCTTTTAACATTGTTTT
Found at i:23442615 original size:28 final size:27
Alignment explanation
Indices: 23442579--23442637 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 27
23442569 TGTCTTTGTA
*
23442579 GTTTGTTCATTTAATCTCATCTTTTTTT
1 GTTTCTTCATTTAATCTCATC-TTTTTT
23442607 GTTTCTTCATTTAATCTCATCTTTTTT
1 GTTTCTTCATTTAATCTCATCTTTTTT
23442634 GTTT
1 GTTT
23442638 TTGCTTTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 10 0.33
28 20 0.67
ACGTcount: A:0.14, C:0.15, G:0.07, T:0.64
Consensus pattern (27 bp):
GTTTCTTCATTTAATCTCATCTTTTTT
Found at i:23443637 original size:13 final size:13
Alignment explanation
Indices: 23443619--23443643 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23443609 CATATTTGTC
23443619 TCTTTTTTTTTCT
1 TCTTTTTTTTTCT
23443632 TCTTTTTTTTTC
1 TCTTTTTTTTTC
23443644 CATCAACTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TCTTTTTTTTTCT
Found at i:23446054 original size:9 final size:9
Alignment explanation
Indices: 23446040--23446075 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
23446030 GGTTGCAAAA
23446040 AGGACGATG
1 AGGACGATG
*
23446049 AGGACGACG
1 AGGACGATG
23446058 AGGACGATG
1 AGGACGATG
*
23446067 AGGATGATG
1 AGGACGATG
23446076 TTTCTTCGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.33, C:0.11, G:0.44, T:0.11
Consensus pattern (9 bp):
AGGACGATG
Found at i:23446612 original size:21 final size:21
Alignment explanation
Indices: 23446594--23446655 Score: 72
Period size: 22 Copynumber: 3.0 Consensus size: 21
23446584 GAAATTAATT
23446594 ATTTTT-ATTTTTATTTTAAA
1 ATTTTTAATTTTTATTTTAAA
*
23446614 ATTTTTAATTTTTATATTTCAA
1 ATTTTTAATTTTTAT-TTTAAA
* * *
23446636 ATTTTAAAATTTAATTTTAA
1 ATTTTTAATTTTTATTTTAA
23446656 TTATTAGTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 6 0.17
21 12 0.34
22 17 0.49
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTTTTAATTTTTATTTTAAA
Found at i:23446624 original size:15 final size:15
Alignment explanation
Indices: 23446600--23446655 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
23446590 AATTATTTTT
23446600 ATTTTT-ATTTTAAA
1 ATTTTTAATTTTAAA
* *
23446614 ATTTTTAATTTTTAT
1 ATTTTTAATTTTAAA
**
23446629 ATTTCAAATTTTAAA
1 ATTTTTAATTTTAAA
23446644 A--TTTAATTTTAA
1 ATTTTTAATTTTAA
23446656 TTATTAGTAT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
13 9 0.27
14 6 0.18
15 18 0.55
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTTTTAATTTTAAA
Found at i:23451681 original size:29 final size:29
Alignment explanation
Indices: 23451635--23451698 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
23451625 GGTTGTCACT
*
23451635 TCCACCTAGGTGCTGCCT-ATCAGATGCCC
1 TCCACCTAGGTGCTGCCTGA-CACATGCCC
*
23451664 TCCACCTGGGTG-TCGCCTGACACATGCCC
1 TCCACCTAGGTGCT-GCCTGACACATGCCC
*
23451693 TTCACC
1 TCCACC
23451699 CCTCCAACCC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 1 0.03
29 28 0.93
30 1 0.03
ACGTcount: A:0.16, C:0.41, G:0.20, T:0.23
Consensus pattern (29 bp):
TCCACCTAGGTGCTGCCTGACACATGCCC
Found at i:23458847 original size:15 final size:15
Alignment explanation
Indices: 23458824--23458853 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23458814 TGCATGTTCT
*
23458824 CTTTCTTTTATTATA
1 CTTTATTTTATTATA
23458839 CTTTATTTTATTATA
1 CTTTATTTTATTATA
23458854 ATTATAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (15 bp):
CTTTATTTTATTATA
Found at i:23463542 original size:14 final size:15
Alignment explanation
Indices: 23463519--23463547 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
23463509 TACTTTGGCC
23463519 ATAAC-TTTTTATAA
1 ATAACATTTTTATAA
23463533 ATAACATTTTTATAA
1 ATAACATTTTTATAA
23463548 CATATAATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (15 bp):
ATAACATTTTTATAA
Found at i:23486521 original size:102 final size:102
Alignment explanation
Indices: 23486341--23486639 Score: 550
Period size: 102 Copynumber: 3.0 Consensus size: 102
23486331 TGGCTGAAGC
23486341 ATTGAATCAAGATTCTGAAGTGGCTGAAAACAAGGAGG-C-T-ATTGTCAATGATTCTCTTGCAG
1 ATTGAATCAAGATTCTGAAGTGGCTGAAAACAAGGAGGCCATCATTGTCAATGATTCTCTTGCAG
23486403 AGTTATCTGAGCAACCGGCAGCAAAGAGGATGCAACA
66 AGTTATCTGAGCAACCGGCAGCAAAGAGGATGCAACA
23486440 ATTGAATCAAGATTCTGAAGTGGCTGAAAACAAGGAGGCCATCATTGTCAATGATTCTCTTGCAG
1 ATTGAATCAAGATTCTGAAGTGGCTGAAAACAAGGAGGCCATCATTGTCAATGATTCTCTTGCAG
23486505 AGTTATCTGAGCAACCGGCAGCAAAGAGGATGCAACA
66 AGTTATCTGAGCAACCGGCAGCAAAGAGGATGCAACA
*
23486542 ATTGAATCAAGATTCTGAAGTGGCTGAAAACAAGGAGGCCATCATTGTCAATGATTCTCTGGCAG
1 ATTGAATCAAGATTCTGAAGTGGCTGAAAACAAGGAGGCCATCATTGTCAATGATTCTCTTGCAG
* *
23486607 AGTTATCCGAGCAACCAGCAGCAAAGAGGATGC
66 AGTTATCTGAGCAACCGGCAGCAAAGAGGATGC
23486640 GGCTTTCGCC
Statistics
Matches: 194, Mismatches: 3, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
99 38 0.20
100 1 0.01
101 1 0.01
102 154 0.79
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (102 bp):
ATTGAATCAAGATTCTGAAGTGGCTGAAAACAAGGAGGCCATCATTGTCAATGATTCTCTTGCAG
AGTTATCTGAGCAACCGGCAGCAAAGAGGATGCAACA
Done.