Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 74 of 153
Found at i:23492407 original size:21 final size:21
Alignment explanation
Indices: 23492347--23492412 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
23492337 TTCTGTTCGT
23492347 ATCTCTTATATTCTTCGTATA
1 ATCTCTTATATTCTTCGTATA
* * * *
23492368 ATCTCCT-CA-GCTTCATATA
1 ATCTCTTATATTCTTCGTATA
23492387 ATCTCTTATATTCTTCGTATA
1 ATCTCTTATATTCTTCGTATA
23492408 ATCTC
1 ATCTC
23492413 CTATCAGATC
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
19 14 0.40
20 2 0.06
21 19 0.54
ACGTcount: A:0.24, C:0.24, G:0.05, T:0.47
Consensus pattern (21 bp):
ATCTCTTATATTCTTCGTATA
Found at i:23494836 original size:16 final size:16
Alignment explanation
Indices: 23494814--23494855 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 16
23494804 CTCTCACTCC
*
23494814 GTGTGTGTGTGTGTGCAT
1 GTGTGTGTCTGTGT-C-T
23494832 GTGTGTGTCTGTGTCT
1 GTGTGTGTCTGTGTCT
23494848 GTGTGTGT
1 GTGTGTGT
23494856 ATTATAGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.39
17 1 0.04
18 13 0.57
ACGTcount: A:0.02, C:0.07, G:0.43, T:0.48
Consensus pattern (16 bp):
GTGTGTGTCTGTGTCT
Found at i:23501355 original size:34 final size:35
Alignment explanation
Indices: 23501311--23501377 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
23501301 CAGTAAAATG
23501311 TTTTCCGTAAAATGATTT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
23501345 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
23501378 CTGATATTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:23501517 original size:17 final size:18
Alignment explanation
Indices: 23501483--23501522 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
23501473 TATATTAATA
*
23501483 AATTTTTATATTTTAAAT
1 AATTTTTATATTTGAAAT
*
23501501 TATTTTTATA-TTGAAAT
1 AATTTTTATATTTGAAAT
23501518 AATTT
1 AATTT
23501523 ATTTATAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (18 bp):
AATTTTTATATTTGAAAT
Found at i:23502094 original size:11 final size:12
Alignment explanation
Indices: 23502070--23502094 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23502060 TTAATCTATT
23502070 AAAAATTAGAAA
1 AAAAATTAGAAA
23502082 AAAAATTAGAAA
1 AAAAATTAGAAA
23502094 A
1 A
23502095 TTTTATAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAAATTAGAAA
Found at i:23502209 original size:10 final size:10
Alignment explanation
Indices: 23502183--23502216 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
23502173 CAAAAGATGC
23502183 ATTAATTTTT
1 ATTAATTTTT
*
23502193 GTATAATTTTT
1 AT-TAATTTTT
23502204 ATTAATTTTT
1 ATTAATTTTT
23502214 ATT
1 ATT
23502217 TTTTTATCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (10 bp):
ATTAATTTTT
Found at i:23502356 original size:20 final size:18
Alignment explanation
Indices: 23502333--23502372 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
23502323 GGTTAAAGGG
23502333 TATTTTTAATGCATTTTATA
1 TATTTTTAATG-ATTTT-TA
*
23502353 TATTTTTTATGATTTTTA
1 TATTTTTAATGATTTTTA
23502371 TA
1 TA
23502373 ACATTTTGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 5 0.26
20 10 0.53
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.65
Consensus pattern (18 bp):
TATTTTTAATGATTTTTA
Found at i:23502367 original size:19 final size:19
Alignment explanation
Indices: 23502333--23502436 Score: 56
Period size: 19 Copynumber: 5.5 Consensus size: 19
23502323 GGTTAAAGGG
*
23502333 TATTTTTAATGCATTTTATA
1 TATTTTTTATG-ATTTTATA
23502353 TATTTTTTATGATTTT-TA
1 TATTTTTTATGATTTTATA
***
23502371 TAACATTT-TGCAATTTT-TA
1 TATTTTTTATG--ATTTTATA
*
23502390 TATTTTTTACGATATTTATA
1 TATTTTTTATGAT-TTTATA
* * *
23502410 -ATTTATTCT-ATTTTAAA
1 TATTTTTTATGATTTTATA
*
23502427 TAATTTTTAT
1 TATTTTTTAT
23502437 TAAAATTTAT
Statistics
Matches: 63, Mismatches: 15, Indels: 14
0.68 0.16 0.15
Matches are distributed among these distances:
17 7 0.11
18 17 0.27
19 26 0.41
20 13 0.21
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.62
Consensus pattern (19 bp):
TATTTTTTATGATTTTATA
Found at i:23503499 original size:24 final size:25
Alignment explanation
Indices: 23503472--23503524 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
23503462 TTAGTAAGTC
*
23503472 AAATCA-ACTATACTAATAAATGCT
1 AAATCATACTATACTAATAAATACT
*
23503496 AAAT-ATATTATACTAATAAATACT
1 AAATCATACTATACTAATAAATACT
23503520 AAATC
1 AAATC
23503525 TTCTAGAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.53, C:0.13, G:0.02, T:0.32
Consensus pattern (25 bp):
AAATCATACTATACTAATAAATACT
Found at i:23505467 original size:24 final size:25
Alignment explanation
Indices: 23505440--23505492 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
23505430 TTAGTGAGTC
*
23505440 AAATCA-ACTATACTAATAAAGGCT
1 AAATCATACTATACTAATAAAGACT
* *
23505464 AAAT-ATATTATACTAATAAATACT
1 AAATCATACTATACTAATAAAGACT
23505488 AAATC
1 AAATC
23505493 TTCTAGAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.53, C:0.13, G:0.04, T:0.30
Consensus pattern (25 bp):
AAATCATACTATACTAATAAAGACT
Found at i:23507953 original size:2 final size:2
Alignment explanation
Indices: 23507948--23507972 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
23507938 TACACACACA
23507948 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
23507973 ATATATAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:23508111 original size:10 final size:10
Alignment explanation
Indices: 23508096--23508130 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
23508086 GAGAATTTGA
23508096 TCCTTTCTGT
1 TCCTTTCTGT
23508106 TCCTTTCTGT
1 TCCTTTCTGT
*
23508116 TCCTATCT-T
1 TCCTTTCTGT
23508125 TCCTTT
1 TCCTTT
23508131 TTCTTTTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 6 0.26
10 17 0.74
ACGTcount: A:0.03, C:0.31, G:0.06, T:0.60
Consensus pattern (10 bp):
TCCTTTCTGT
Found at i:23511407 original size:2 final size:2
Alignment explanation
Indices: 23511400--23511430 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
23511390 GAAAGACACC
23511400 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
23511431 ATGGGCATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:23512212 original size:2 final size:2
Alignment explanation
Indices: 23512156--23512192 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
23512146 CAGCTTTAAT
23512156 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
23512193 TTCTTACCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:23513863 original size:30 final size:32
Alignment explanation
Indices: 23513811--23513869 Score: 86
Period size: 30 Copynumber: 1.9 Consensus size: 32
23513801 AATTAGACAC
23513811 TTTTAAGAAGTTAATGATCAAATTCAACTATT
1 TTTTAAGAAGTTAATGATCAAATTCAACTATT
* *
23513843 TTTTAA-AAGTTTATG-TCAAATTTAACT
1 TTTTAAGAAGTTAATGATCAAATTCAACT
23513870 CTAAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 11 0.44
31 8 0.32
32 6 0.24
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.44
Consensus pattern (32 bp):
TTTTAAGAAGTTAATGATCAAATTCAACTATT
Found at i:23516140 original size:27 final size:27
Alignment explanation
Indices: 23516102--23516184 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
23516092 ATACAAAATA
*
23516102 GTGGCGCCTATCTTAGAGGCGCCAATG
1 GTGGTGCCTATCTTAGAGGCGCCAATG
* * * *
23516129 GTGGTGCCTATCTGACAGGCGCCACTA
1 GTGGTGCCTATCTTAGAGGCGCCAATG
* *
23516156 GTTGTGCC-ATGTTGAGAGGCGCCAATG
1 GTGGTGCCTATCTT-AGAGGCGCCAATG
23516183 GT
1 GT
23516185 CTTATTTTTT
Statistics
Matches: 44, Mismatches: 11, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
26 3 0.07
27 41 0.93
ACGTcount: A:0.18, C:0.24, G:0.34, T:0.24
Consensus pattern (27 bp):
GTGGTGCCTATCTTAGAGGCGCCAATG
Found at i:23521413 original size:16 final size:16
Alignment explanation
Indices: 23521392--23521430 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
23521382 AAAATAAAAT
23521392 AAAATTACATTATATA
1 AAAATTACATTATATA
23521408 AAAATTACATTATATA
1 AAAATTACATTATATA
23521424 AAAATTA
1 AAAATTA
23521431 AATGAGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (16 bp):
AAAATTACATTATATA
Found at i:23521433 original size:21 final size:19
Alignment explanation
Indices: 23521385--23521426 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 19
23521375 AAAATAAAAA
23521385 ATAAAATAAAATTACATTAT
1 ATAAAAT-AAATTACATTAT
23521405 AT--AA-AAATTACATTAT
1 ATAAAATAAATTACATTAT
23521421 ATAAAA
1 ATAAAA
23521427 ATTAAATGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
16 14 0.70
18 4 0.20
20 2 0.10
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAAATAAATTACATTAT
Found at i:23522592 original size:14 final size:14
Alignment explanation
Indices: 23522569--23522602 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
23522559 TGGTATGAGT
23522569 TTAT-GGGTTTTGG
1 TTATAGGGTTTTGG
23522582 TTATAGGGTTTTGG
1 TTATAGGGTTTTGG
23522596 TTATAGG
1 TTATAGG
23522603 CAAATGATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (14 bp):
TTATAGGGTTTTGG
Found at i:23522758 original size:24 final size:25
Alignment explanation
Indices: 23522731--23522778 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
23522721 AGAGGAAAGT
23522731 TTAAAGAACATAAAA-GAAAAAAAA
1 TTAAAGAACATAAAACGAAAAAAAA
** *
23522755 TTAAATTACTTAAAACGAAAAAAA
1 TTAAAGAACATAAAACGAAAAAAA
23522779 TNTTAATAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (25 bp):
TTAAAGAACATAAAACGAAAAAAAA
Found at i:23530531 original size:46 final size:45
Alignment explanation
Indices: 23530370--23531125 Score: 288
Period size: 44 Copynumber: 16.6 Consensus size: 45
23530360 TTTTAATCCA
* * * *
23530370 CTCCACTGTAATCTCAGGCAGATAGGAT-TACTATCTTCAATCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTAATATCTTCAATCTG
* *
23530414 CTCCGCTGTAATCTCAGGGAGATAAGAT-TACTATCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTAATATCTTCAATCTG
* * **
23530458 CTCCATTGTAATCTCAGGGAGATAAGATCTGAA-ATTTTTCGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCT-AATA-TCTTCAATCTG
* * **
23530504 TTCCACTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGATGTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTAATATCTTCAATC-----TG
* * * *
23530553 ATCTACTCTACTGTAA-CATCAGAGAGATAAGATCCT-TTAT-TTTAATCCG
1 --CT-C-C-ACTGTAATC-TCAGGGAGATAAGAT-CTAATATCTTCAATCTG
* * * * * *
23530602 CTCCACTGTAA-CTTCAGAGAGTTAGGAT-TACTAGCTTCAATCTA
1 CTCCACTGTAATC-TCAGGGAGATAAGATCTAATATCTTCAATCTG
* * * **
23530646 CTCCGCTGTAATCTCAGAGAGATAAGATCT-CTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTAATATCTTCAATCTG
* ** *
23530690 CTCCACTGTAACCTCAGGGAGATAAGATCTGAA-ATTCTTCGGTCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCT-AATA-TCTTCAATCTG
* * **
23530736 CTCCCCTGTAATCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGATGTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTAATATCTTCAATC-----TG
* * * * *
23530785 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGGTCCT-TTAT-TTTAATCCG
1 --CT-C-C-ACTGTAATC-TCAGGGAGATAAGAT-CTAATATCTTCAATCTG
* * * * * *
23530834 CTCCACTGTAA-CTTCAGAGAGTTAGGAT-TACTAGCTTCAATCTA
1 CTCCACTGTAATC-TCAGGGAGATAAGATCTAATATCTTCAATCTG
* * * **
23530878 CTCCGCTGTAATCTCAGAGAGATAAGATCT-CTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTAATATCTTCAATCTG
* * ** *
23530922 CTCTACTGTAACCTCAGGGAGATAAGATCTGAA-ATTCTTCGGTCTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCT-AATA-TCTTCAATCTG
* * * * * * * * *
23530968 CTCCCCTGTAACCTCAGGGTGATAAGACCT--GA--TGCGATTTA
1 CTCCACTGTAATCTCAGGGAGATAAGATCTAATATCTTCAATCTG
** * * * *
23531009 CTCTGCTGTAA-CTTCAGAGAGATAAGATCCT-TTAT-TTTAATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGAT-CTAATATCTTCAATCTG
* * ***
23531053 CTCCACTGTAATCTCAAGGAGATAGGATCTGAA-ATTCTTTGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCT-AATA-TCTTCAATCTG
*
23531099 TTCCACTGTAATCTCAGGGAGATAAGA
1 CTCCACTGTAATCTCAGGGAGATAAGA
23531126 CCTGTATAAT
Statistics
Matches: 542, Mismatches: 117, Indels: 104
0.71 0.15 0.14
Matches are distributed among these distances:
40 1 0.00
41 27 0.05
42 4 0.01
43 7 0.01
44 280 0.52
45 10 0.02
46 137 0.25
47 4 0.01
49 5 0.01
51 3 0.01
52 2 0.00
53 4 0.01
54 52 0.10
55 6 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (45 bp):
CTCCACTGTAATCTCAGGGAGATAAGATCTAATATCTTCAATCTG
Found at i:23530686 original size:232 final size:232
Alignment explanation
Indices: 23530285--23531063 Score: 1232
Period size: 232 Copynumber: 3.4 Consensus size: 232
23530275 CACTGCAACA
23530285 TCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATA
1 TCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATA
* * *
23530350 AGATCCTTTATTTTAATCCACTCCACTGTAA-TCTCAG-GCAGATAGGATTACTATCTTCAATCT
66 AGATCCTTTATTTTAATCCGCTCCACTGTAACT-TCAGAG-AGTTAGGATTACTAGCTTCAATCT
* ** * *
23530413 ACTCCGCTGTAATCTCAGGGAGATAAGAT-TACTATCTTCAATCTGCTCCATTGTAATCTCAGGG
129 ACTCCGCTGTAATCTCAGAGAGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
* **
23530477 AGATAAGATCTGAAATTTTTCGGTCTGTTCCACTGTAATC
193 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAATC
*
23530517 TCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAACATCAGAGAGATA
1 TCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATA
23530582 AGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGTTAGGATTACTAGCTTCAATCTAC
66 AGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGTTAGGATTACTAGCTTCAATCTAC
23530647 TCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGA
131 TCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGA
*
23530712 TAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAATC
196 TAAGATCTGAAATTCTTCGGTCTACTCCACTGTAATC
23530749 TCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATA
1 TCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATA
*
23530814 AGGTCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGTTAGGATTACTAGCTTCAATCTAC
66 AGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGTTAGGATTACTAGCTTCAATCTAC
*
23530879 TCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCTACTGTAACCTCAGGGAGA
131 TCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGA
* *
23530944 TAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACC
196 TAAGATCTGAAATTCTTCGGTCTACTCCACTGTAATC
* *
23530981 TCAGGGTGATAAGA-C-CT-G-----ATGC-GA--T--T-TACTCTGCTGTAACTTCAGAGAGAT
1 TCAGGGAGATAAGATCTCTGGCTTCAAT-CTGATGTGATCTACTCTACTGTAACTTCAGAGAGAT
23531032 AAGATCCTTTATTTTAATCCGCTCCACTGTAA
65 AAGATCCTTTATTTTAATCCGCTCCACTGTAA
23531064 TCTCAAGGAG
Statistics
Matches: 523, Mismatches: 20, Indels: 21
0.93 0.04 0.04
Matches are distributed among these distances:
219 55 0.11
220 1 0.00
222 1 0.00
224 4 0.01
225 1 0.00
229 1 0.00
230 2 0.00
231 1 0.00
232 454 0.87
233 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.32
Consensus pattern (232 bp):
TCAGGGAGATAAGATCTCTGGCTTCAATCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATA
AGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGAGAGTTAGGATTACTAGCTTCAATCTAC
TCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGA
TAAGATCTGAAATTCTTCGGTCTACTCCACTGTAATC
Found at i:23530809 original size:142 final size:141
Alignment explanation
Indices: 23530641--23530921 Score: 316
Period size: 144 Copynumber: 2.0 Consensus size: 141
23530631 ACTAGCTTCA
** * *
23530641 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGAT-CTCTGGCTTCAATCTGCTCCACTGTAACCT
1 ATCTACTCTACTGTAACT-TCA-AGAGATAAGATCCT-TGACTTCAATCCGCTCCACTGTAACCT
* * ** *
23530704 CAGGGAGATAAGATCTGAA-ATTCTTCGGTCTACTCCCCTGTAATCTCAGGGAGATAAGATCTCT
63 CAGAGAGATAAGAT-T-AATA-GCTTCAATCTACTCCCCTGTAATCTCAGAGAGATAAGATCTCT
23530768 GGCTTCAATCTGATGTG
125 GGCTTCAATCTGATGTG
* * * * *
23530785 ATCTACTCTACTGTAACTTCAGAGAGATAAGGTCCTTTATTTTAATCCGCTCCACTGTAACTTCA
1 ATCTACTCTACTGTAACTTCA-AGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCA
* * * *
23530850 GAGAGTTAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGAGAGATAAGATCTCTGGCTT
65 GAGAGATAAGATTAATAGCTTCAATCTACTCCCCTGTAATCTCAGAGAGATAAGATCTCTGGCTT
23530915 CAATCTG
130 CAATCTG
23530922 CTCTACTGTA
Statistics
Matches: 116, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
142 51 0.44
143 2 0.02
144 60 0.52
145 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (141 bp):
ATCTACTCTACTGTAACTTCAAGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCAG
AGAGATAAGATTAATAGCTTCAATCTACTCCCCTGTAATCTCAGAGAGATAAGATCTCTGGCTTC
AATCTGATGTG
Found at i:23531029 original size:131 final size:131
Alignment explanation
Indices: 23530876--23531129 Score: 332
Period size: 131 Copynumber: 1.9 Consensus size: 131
23530866 AGCTTCAATC
* * * *
23530876 TACTCCGCTGTAATCTCAGAGAGATAAGAT-CTCTGGCTTCAATCTGCTCTACTGTAACCTCAGG
1 TACTCCGCTGTAATCTCAGAGAGATAAGATCCT-TGACTTCAATCCGCTCCACTGTAACCTCAAG
* *
23530940 GAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACCTGATGCGA
65 GAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGA
23531005 TT
130 TT
* * * * *
23531007 TACTCTGCTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAAG
1 TACTCCGCTGTAATC-TCAGAGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCAAG
* * ** *
23531071 GAGATAGGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACCTG
65 GAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTG
23531130 TATAATAAAC
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
130 1 0.01
131 102 0.97
132 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (131 bp):
TACTCCGCTGTAATCTCAGAGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCAAGG
AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGAT
T
Found at i:23538624 original size:10 final size:10
Alignment explanation
Indices: 23538609--23538635 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
23538599 GTGGTGGTTG
23538609 CACCTCTCGC
1 CACCTCTCGC
23538619 CACCTCTCGC
1 CACCTCTCGC
23538629 CACCTCT
1 CACCTCT
23538636 GCGCATATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.11, C:0.59, G:0.07, T:0.22
Consensus pattern (10 bp):
CACCTCTCGC
Found at i:23540174 original size:63 final size:63
Alignment explanation
Indices: 23540075--23540201 Score: 245
Period size: 63 Copynumber: 2.0 Consensus size: 63
23540065 TTCAACCGTA
*
23540075 GCATTATGATTACAGTACTGGTGAAGCGATCTTTCTAGTTCAGTTATCTGGACCTTCAACTCC
1 GCATTATGATTACAGTACTGGTGAAGCGATCTTTCTAGTTCAGTTATCCGGACCTTCAACTCC
23540138 GCATTATGATTACAGTACTGGTGAAGCGATCTTTCTAGTTCAGTTATCCGGACCTTCAACTCC
1 GCATTATGATTACAGTACTGGTGAAGCGATCTTTCTAGTTCAGTTATCCGGACCTTCAACTCC
23540201 G
1 G
23540202 TCTTCTCGTC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (63 bp):
GCATTATGATTACAGTACTGGTGAAGCGATCTTTCTAGTTCAGTTATCCGGACCTTCAACTCC
Found at i:23559567 original size:31 final size:31
Alignment explanation
Indices: 23559507--23559567 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
23559497 ATAATTATTG
* * *
23559507 AACTATTTGAAAGTTTTCATTTAAGTCATTA
1 AACTATTTAAAAGTTTTCATTCAACTCATTA
23559538 AACTATTTAAAAGTTCTT-ATTCAACTCATT
1 AACTATTTAAAAGTT-TTCATTCAACTCATT
23559568 GAGTTGTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 24 0.92
32 2 0.08
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.44
Consensus pattern (31 bp):
AACTATTTAAAAGTTTTCATTCAACTCATTA
Found at i:23561251 original size:23 final size:23
Alignment explanation
Indices: 23561221--23561267 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
23561211 ATGTTATAAC
*
23561221 TTTTTTTTATTTATCAAAAAATA
1 TTTTTTTTATTTACCAAAAAATA
*
23561244 TTTTTTTTATTTACCAAAATATA
1 TTTTTTTTATTTACCAAAAAATA
23561267 T
1 T
23561268 CAAAAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTTTTTTATTTACCAAAAAATA
Found at i:23561540 original size:19 final size:21
Alignment explanation
Indices: 23561502--23561540 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
23561492 AATAATTGAT
*
23561502 TATATTGTTGTTATTATTTTG
1 TATATTGTTGTTAATATTTTG
23561523 TATATT-TTG-TAATATTTT
1 TATATTGTTGTTAATATTTT
23561541 TTGTTTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (21 bp):
TATATTGTTGTTAATATTTTG
Found at i:23561613 original size:3 final size:3
Alignment explanation
Indices: 23561607--23561635 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
23561597 ATTATTATTA
23561607 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
23561636 AGTATTAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:23565515 original size:22 final size:22
Alignment explanation
Indices: 23565489--23565551 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 22
23565479 CCTTCCTTCC
23565489 CTCTTCTTCTTCTTTTTTTTTT
1 CTCTTCTTCTTCTTTTTTTTTT
*
23565511 CTCTTC-TC--CTTTCCTTTTTT
1 CTCTTCTTCTTCTTT-TTTTTTT
23565531 CTCCTTCTTTCTTTCTTTTTT
1 CT-CTTC-TTC-TTCTTTTTT
23565552 CTTCTCCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 11
0.71 0.04 0.24
Matches are distributed among these distances:
19 4 0.12
20 8 0.25
21 6 0.19
22 6 0.19
23 2 0.06
25 2 0.06
26 4 0.12
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (22 bp):
CTCTTCTTCTTCTTTTTTTTTT
Found at i:23565525 original size:40 final size:38
Alignment explanation
Indices: 23565467--23565659 Score: 183
Period size: 40 Copynumber: 5.2 Consensus size: 38
23565457 TTACCTTTTT
* *
23565467 TTTCTTTTTTT-TCCT-TCC-TTCC-CTCTTCTTCTTC
1 TTTCTTTTTTTCTCTTCTCCTTTCCTTTCTTCTTCTTC
* *
23565501 TTT-TTTTTTTCTCTTCTCCTTTCCTTTTTTCTCCTTC
1 TTTCTTTTTTTCTCTTCTCCTTTCCTTTCTTCTTCTTC
*
23565538 TTTCTTTCTTTTTTCTTCTCCTTTCCTTTTCTTCTTCTTTC
1 TTTCTTT-TTTTCTCTTCTCCTTTCC-TTTCTTCTTC-TTC
23565579 TTTCTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTTCTT-
1 TTTCTTTTTTTCTCTTCTCCTTTCC-TTTC-TT-CTTCTTC
* *
23565619 GTTCTTTCTTTC-C-TCTCC-TTCCTTTC-T-TTCTTTC
1 TTTCTTTTTTTCTCTTCTCCTTTCCTTTCTTCTTC-TTC
23565653 TTTCTTT
1 TTTCTTT
23565660 CCCTCTCCTT
Statistics
Matches: 136, Mismatches: 11, Indels: 24
0.80 0.06 0.14
Matches are distributed among these distances:
32 3 0.02
33 9 0.07
34 13 0.10
35 3 0.02
36 8 0.06
37 16 0.12
38 8 0.06
39 18 0.13
40 40 0.29
41 14 0.10
42 4 0.03
ACGTcount: A:0.00, C:0.31, G:0.01, T:0.68
Consensus pattern (38 bp):
TTTCTTTTTTTCTCTTCTCCTTTCCTTTCTTCTTCTTC
Found at i:23565530 original size:21 final size:21
Alignment explanation
Indices: 23565504--23565617 Score: 118
Period size: 21 Copynumber: 5.7 Consensus size: 21
23565494 CTTCTTCTTT
23565504 TTTTTTTCTCTTCTCCTTTCC
1 TTTTTTTCTCTTCTCCTTTCC
*
23565525 -TTTTTTCTC--CTTCTTT-C
1 TTTTTTTCTCTTCTCCTTTCC
*
23565542 TTTCTTTTTTCTTCTCCTTTCC
1 TTT-TTTTCTCTTCTCCTTTCC
*
23565564 TTTTCTTCTTCTT-T-CTTT-C
1 TTTTTTTC-TCTTCTCCTTTCC
23565583 TTTTTTTCTCTTCTCCTTTCC
1 TTTTTTTCTCTTCTCCTTTCC
23565604 TTTTCTTTC-CTTCT
1 TTTT-TTTCTCTTCT
23565618 TGTTCTTTCT
Statistics
Matches: 77, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
17 1 0.01
18 12 0.16
19 15 0.19
20 17 0.22
21 20 0.26
22 12 0.16
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (21 bp):
TTTTTTTCTCTTCTCCTTTCC
Found at i:23565538 original size:37 final size:39
Alignment explanation
Indices: 23565490--23565659 Score: 203
Period size: 40 Copynumber: 4.5 Consensus size: 39
23565480 CTTCCTTCCC
*
23565490 TCTTCTTCTTCTTT-TTTTTTTCTCTTCTCCTTTCCTTT
1 TCTTCTCCTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTT
*
23565528 T-TTCTCCTTCTTTCTTTCTTTTTTCTTCTCCTTTCCTTT
1 TCTTCTCCTTCTTTCTTT-TTTTCTCTTCTCCTTTCCTTT
*
23565567 TCTTCTTCTTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTT
1 TCTTC-TCCTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTT
*
23565607 TCTT-TCCTTCTTGTTCTTTCTTTC-C-TCTCC-TTCC-TT
1 TCTTCTCCTTC-T-TTCTTTTTTTCTCTTCTCCTTTCCTTT
*
23565643 TCTT-TCTTTCTTTCTTT
1 TCTTCTCCTTCTTTCTTT
23565660 CCCTCTCCTT
Statistics
Matches: 119, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
34 6 0.05
35 1 0.01
36 11 0.09
37 15 0.13
38 14 0.12
39 23 0.19
40 37 0.31
41 12 0.10
ACGTcount: A:0.00, C:0.31, G:0.01, T:0.69
Consensus pattern (39 bp):
TCTTCTCCTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTT
Found at i:23565544 original size:4 final size:4
Alignment explanation
Indices: 23565535--23565660 Score: 80
Period size: 4 Copynumber: 29.8 Consensus size: 4
23565525 TTTTTTCTCC
23565535 TTCT TTCT TTCT TT-T TTCT TCTCCT TTCCT TT-T CTTC- TTCT TTCT
1 TTCT TTCT TTCT TTCT TTCT T-T-CT TT-CT TTCT -TTCT TTCT TTCT
* * *
23565580 TTCT TTTT TTCT CTTC- TCCT TTCCTT TTCT TTCC TTCTT GTTCT TTCT
1 TTCT TTCT TTCT -TTCT TTCT TT-C-T TTCT TTCT TTC-T -TTCT TTCT
* *
23565628 TTCCT CTCCT TCCT TTCT TTCT TTCT TTCT TTC
1 TT-CT -TTCT TTCT TTCT TTCT TTCT TTCT TTC
23565661 CCTCTCCTTT
Statistics
Matches: 100, Mismatches: 8, Indels: 28
0.74 0.06 0.21
Matches are distributed among these distances:
3 9 0.09
4 64 0.64
5 17 0.17
6 10 0.10
ACGTcount: A:0.00, C:0.31, G:0.01, T:0.68
Consensus pattern (4 bp):
TTCT
Found at i:23565575 original size:58 final size:54
Alignment explanation
Indices: 23565507--23565659 Score: 145
Period size: 54 Copynumber: 2.8 Consensus size: 54
23565497 CTTCTTTTTT
23565507 TTTTC-TCTTCTCCTTTCCTTTTTTCTCCTTCTTTCTTTCTTTTTTCTTCTCCTTTCC
1 TTTTCTTCTTCTCCTTTCCTTTTTTCT-CTTCTTTCTTTCTTTTTTCTT-TCC-TT-C
* * * *
23565564 TTTTCTTCTTCTTTCTTTCTTTTTTTCTCTTC-TCCTTTC-CTTTTCTTTCCTTC
1 TTTTCTTCTTC-TCCTTTCCTTTTTTCTCTTCTTTCTTTCTTTTTTCTTTCCTTC
* *
23565617 TTGTTCTTTCTT-TCCTCTCCTTCCTTTCT-TTCTTTCTTTCTTT
1 TT-TTC-TTCTTCTCCTTTCCTT-TTTTCTCTTCTTTCTTTCTTT
23565660 CCCTCTCCTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
53 13 0.16
54 16 0.20
55 9 0.11
56 7 0.09
57 11 0.14
58 9 0.11
59 14 0.18
ACGTcount: A:0.00, C:0.31, G:0.01, T:0.68
Consensus pattern (54 bp):
TTTTCTTCTTCTCCTTTCCTTTTTTCTCTTCTTTCTTTCTTTTTTCTTTCCTTC
Found at i:23565739 original size:27 final size:27
Alignment explanation
Indices: 23565709--23565782 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 27
23565699 TTATGCACTA
*
23565709 GTGCTGCCAATGGTATTGGCACCATTG
1 GTGCTGCCAATGGCATTGGCACCATTG
* * *
23565736 GTGCCGCCAATGGCATGGGCACCTTTG
1 GTGCTGCCAATGGCATTGGCACCATTG
23565763 GTG-TCGCCAATGGCATTGGC
1 GTGCT-GCCAATGGCATTGGC
23565783 GTGACCAGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.16, C:0.26, G:0.32, T:0.26
Consensus pattern (27 bp):
GTGCTGCCAATGGCATTGGCACCATTG
Found at i:23572752 original size:29 final size:30
Alignment explanation
Indices: 23572672--23572753 Score: 94
Period size: 31 Copynumber: 2.7 Consensus size: 30
23572662 GATTAAATCA
*
23572672 AAATTAAAGTTTCAAGTATACATTTGAACC
1 AAATTAAAGTTTCAAGTATATATTTGAACC
* * * *
23572702 ACAACTAGAGTTTCACGTATATATTTGCACC
1 A-AATTAAAGTTTCAAGTATATATTTGAACC
*
23572733 AAATTAAAG-TTCATGTATATA
1 AAATTAAAGTTTCAAGTATATA
23572754 ATTGTACATT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
29 11 0.26
30 7 0.16
31 25 0.58
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (30 bp):
AAATTAAAGTTTCAAGTATATATTTGAACC
Found at i:23574339 original size:26 final size:27
Alignment explanation
Indices: 23574308--23574368 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 27
23574298 TTAGCTCTTA
23574308 TGAGCTTCCCGATT-ATAGGCTCTTCG
1 TGAGCTTCCCGATTAATAGGCTCTTCG
* *
23574334 TGAGCTT-CCTATTAATTGGCTCTTCG
1 TGAGCTTCCCGATTAATAGGCTCTTCG
23574360 TGAGCTTCC
1 TGAGCTTCC
23574369 TGATATGGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 5 0.16
26 25 0.81
27 1 0.03
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.38
Consensus pattern (27 bp):
TGAGCTTCCCGATTAATAGGCTCTTCG
Found at i:23574477 original size:25 final size:24
Alignment explanation
Indices: 23574448--23574494 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
23574438 AGCTACTCGT
*
23574448 TATAGGCTCGCATGAGTTTCCTGAA
1 TATA-GCTCGCATGAGCTTCCTGAA
**
23574473 TATAGCTCTTATGAGCTTCCTG
1 TATAGCTCGCATGAGCTTCCTG
23574495 TTATACAGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (24 bp):
TATAGCTCGCATGAGCTTCCTGAA
Found at i:23576268 original size:21 final size:21
Alignment explanation
Indices: 23576239--23576285 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
23576229 CCCATATATT
*
23576239 TAATGTAAACATACTTTT-TCA
1 TAATATAAACAT-CTTTTCTCA
*
23576260 TAATATAAACATGTTTTCTCA
1 TAATATAAACATCTTTTCTCA
23576281 TAATA
1 TAATA
23576286 CAATTAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.43
Consensus pattern (21 bp):
TAATATAAACATCTTTTCTCA
Found at i:23578136 original size:98 final size:98
Alignment explanation
Indices: 23577962--23578158 Score: 322
Period size: 98 Copynumber: 2.0 Consensus size: 98
23577952 TGTACAATAA
* * * *
23577962 ACTTTAAAAGAACATCTACTAATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTAATCCAAGATTTAAGAAATCACACACAATACGTTAAGGCACAATT
*
23578027 CCTCTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
*
23578060 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACACAATACGTTAAGGCACAATT
1 ACTTTAAAAGAACATCCACTAATCCAAGATTTAAGAAATCACACACAATACGTTAAGGCACAATT
* *
23578125 CCTTTAAAATCCCAAACTCGGAATATTTTCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
23578158 A
1 A
23578159 TTATTTTTTA
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTAATCCAAGATTTAAGAAATCACACACAATACGTTAAGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:23579494 original size:19 final size:19
Alignment explanation
Indices: 23579470--23579582 Score: 163
Period size: 19 Copynumber: 5.8 Consensus size: 19
23579460 AATCATATAT
23579470 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
23579489 TCTAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
23579508 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
23579527 TCTAAGATTGCACATATCATA
1 TCTAAGATTG--CATATCATA
**
23579548 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
23579567 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
23579583 CTCAAAAATT
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
19 65 0.79
21 17 0.21
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:23579550 original size:59 final size:56
Alignment explanation
Indices: 23579463--23579582 Score: 161
Period size: 59 Copynumber: 2.1 Consensus size: 56
23579453 ATTACAAAAT
* *
23579463 CATAT-ATTCTAAGATTGCATATCATATCTAAGATTATATATCATCTCTAAGATTG
1 CATATCATTCTAAGATTGCATATCATATCTAAGATTACATATCATATCTAAGATTG
** *
23579518 CATATCATATCTAAGATTGCACATATCATATCTTGGATTGCATATCATATCTAAGATTG
1 CATATCAT-TCTAAGATTG--CATATCATATCTAAGATTACATATCATATCTAAGATTG
23579577 CATATC
1 CATATC
23579583 CTCAAAAATT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
55 5 0.09
56 2 0.04
57 10 0.18
59 39 0.70
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (56 bp):
CATATCATTCTAAGATTGCATATCATATCTAAGATTACATATCATATCTAAGATTG
Found at i:23579557 original size:40 final size:40
Alignment explanation
Indices: 23579463--23579578 Score: 168
Period size: 40 Copynumber: 3.0 Consensus size: 40
23579453 ATTACAAAAT
23579463 CATAT-AT-TCTAAGATTGCATATCATATCTAAGATT--A
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTGCA
* *
23579499 TATATCATCTCTAAGATTGCATATCATATCTAAGATTGCA
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTGCA
**
23579539 CATATCATATCTTGGATTGCATATCATATCTAAGATTGCA
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTGCA
23579579 TATCCTCAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
36 4 0.06
37 2 0.03
38 28 0.39
40 37 0.52
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (40 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTGCA
Found at i:23579896 original size:44 final size:44
Alignment explanation
Indices: 23579796--23580540 Score: 382
Period size: 44 Copynumber: 17.2 Consensus size: 44
23579786 CTTCAATCTA
* *
23579796 CTCCATTGCAACTTCAGG-GAGATAAGACTTGCCATCTTTAGTCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTG-CTTC-TTAGTCTG
23579841 -TCTCACTGCAACTTCAGGAG-GATAAGACTTGCTTCCTTAGTCTG
1 CTC-CACTGCAACTTCAGGAGAGATAAGACTTGCTT-CTTAGTCTG
* * * *
23579885 CTCCACTGCAACTTCAGG-GAGATAAGACTAGATGC-GA-TCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCTTCTTAGTCTG
* * * *
23579926 CT-CTCTGCAACTTCA-GAGAGATAAGATCTGTGATT-TTAATCCG
1 CTCCACTGCAACTTCAGGAGAGATAAGA-CT-TGCTTCTTAGTCTG
* * * *
23579969 CTCTACTGCAACTTCAGG-GAGATAGGATTATCGGC-T-TTATTCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACT-T--GCTTCTTAGTCTG
*
23580013 CTCCACTGCAACTTCAGG-GAGATAAGATTTGCCATT-TTCAGTCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTG-C-TTCTT-AGTCTG
* * * *
23580058 CTTCATTGTAACTTCAGGAG-GATAAGGCTTGCTTACTTAGTCTTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCTT-CTTAGTC-TG
* * * * * *
23580103 -TCCACCGCAACTTTAGG-GAGATAAGACTAGATGC-GA-TCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCTTCTTAGTCTG
* * * ** * *
23580143 CT-CTCTGTAACTTCA-AAGAGATAAGATCTGTAATT-TTAATCCG
1 CTCCACTGCAACTTCAGGAGAGATAAGA-CT-TGCTTCTTAGTCTG
* * * ** *
23580186 CTCCACTGTAACTTCAGGA-AAATAGGAC-TGCCGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTG-CTTC-TTAGTCTG
* * * *
23580230 CTCTATTGCAACTTCAGGA-AGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTG-CTTCTT-AGTCTG
*
23580275 C-CTCACTGTAACTTCAGGAG-GATAAGACTTGCTTACTTAGTCTG
1 CTC-CACTGCAACTTCAGGAGAGATAAGACTTGCTT-CTTAGTCTG
* * * *
23580319 CTCCACTGCAACTTCAGG-GAGATAAGACTAGATGC-GA-TCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCTTCTTAGTCTG
* * ** * *
23580360 CT-CTCTGTAACTTCA-GAGAGATAAGATCTGTAATT-TTAATCCG
1 CTCCACTGCAACTTCAGGAGAGATAAGA-CT-TGCTTCTTAGTCTG
* ** *
23580403 CTCCACTGCAACTTCAGG-GAGATAGGA-TTGTCGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTG-CTTC-TTAGTCTG
* *
23580447 CTCCACTGCAACTTCAGGA-AGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTG-CTTCTT-AGTCTG
* * *
23580492 C-CTCACTGTAACTTTAGAAG-GATAAGACTTGCTTACTTAGTC--
1 CTC-CACTGCAACTTCAGGAGAGATAAGACTTGCTT-CTTAGTCTG
23580534 CTCCACT
1 CTCCACT
23580541 ATTGCTTAGG
Statistics
Matches: 542, Mismatches: 100, Indels: 119
0.71 0.13 0.16
Matches are distributed among these distances:
39 2 0.00
40 61 0.11
41 24 0.04
42 20 0.04
43 28 0.05
44 265 0.49
45 140 0.26
46 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGAGAGATAAGACTTGCTTCTTAGTCTG
Found at i:23579978 original size:84 final size:86
Alignment explanation
Indices: 23579796--23580426 Score: 275
Period size: 84 Copynumber: 7.3 Consensus size: 86
23579786 CTTCAATCTA
* * *
23579796 CTCCATTGCAACTTCAGGGAGATAAGACTTGCCATCTTTAGTCTGTCTCACTGCAACTTCAGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGACTAG-CATC-TGAGTCTGTCTCACTGCAACTTCAGGAG
* * *
23579861 GATAAGACTTGCTTCCTTAGTCTG
64 GATAAGACTTGATT-CTTAATCCG
*
23579885 CTCCACTGCAACTTCAGGGAGATAAGACTAG-ATGC-GA-TCTG-CTCTCTGCAACTTCA-GAGA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGCAT-CTGAGTCTGTCTCACTGCAACTTCAGGAG-
23579945 GATAAGATCTGTGATT-TTAATCCG
64 GATAAGA-CT-TGATTCTTAATCCG
* * * * ** * *
23579969 CTCTACTGCAACTTCAGGGAGATAGGATTATCGGCTTTATTCTG-CTCCACTGCAACTTCAGG-G
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGCATC-TGAGTCTGTCT-CACTGCAACTTCAGGAG
* * *
23580032 AGATAAGATTTGCCATT-TTCAGTCTG
64 -GATAAGACTTG--ATTCTT-AATCCG
* * * * * * * * *
23580058 CTTCATTGTAACTTCA-GGAGGATAAGGCTTGCTTACTTAGTCTTGTC-CACCGCAACTTTAGG-
1 CTCCACTGCAACTTCAGGGA-GATAAGACTAGCAT-CTGAGTC-TGTCTCACTGCAACTTCAGGA
* * * *
23580120 GAGATAAGACTAGATGC--GATCTG
63 G-GATAAGACTTGATTCTTAATCCG
* * ** * * * * * *
23580143 CT-CTCTGTAACTTCAAAGAGATAAGATCT-GTAATTTTAATCCG-CTCCACTGTAACTTCAGGA
1 CTCCACTGCAACTTCAGGGAGATAAGA-CTAG-CATCTGAGTCTGTCT-CACTGCAACTTCAGGA
** * *** *
23580205 AAATAGGAC-TGCCGGCTTTAATCTG
63 GGATAAGACTTG-ATTC-TTAATCCG
* * * * * * * *
23580230 CTCTATTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGACTAG-CATC-TGAGTCTGTCTCACTGCAACTTCAGGAG
* * *
23580295 GATAAGACTTGCTTACTTAGTCTG
64 GATAAGACTTGATT-CTTAATCCG
* *
23580319 CTCCACTGCAACTTCAGGGAGATAAGACTAG-ATGC-GA-TCTG-CTCTCTGTAACTTCA-GAGA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGCAT-CTGAGTCTGTCTCACTGCAACTTCAGGAG-
*
23580379 GATAAGATCTGTAATT-TTAATCCG
64 GATAAGA-CT-TGATTCTTAATCCG
23580403 CTCCACTGCAACTTCAGGGAGATA
1 CTCCACTGCAACTTCAGGGAGATA
23580427 GGATTGTCGG
Statistics
Matches: 417, Mismatches: 87, Indels: 81
0.71 0.15 0.14
Matches are distributed among these distances:
82 1 0.00
83 8 0.02
84 149 0.36
85 23 0.06
86 12 0.03
87 21 0.05
88 51 0.12
89 143 0.34
90 8 0.02
91 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (86 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTAGCATCTGAGTCTGTCTCACTGCAACTTCAGGAGGA
TAAGACTTGATTCTTAATCCG
Found at i:23580129 original size:217 final size:217
Alignment explanation
Indices: 23579785--23580540 Score: 1203
Period size: 217 Copynumber: 3.5 Consensus size: 217
23579775 AGGAATTAGT
* * * * * * * *
23579785 GCTTCAATCTACTCCATTGCAACTTCAGGGAGATAAGACTTGCCATCTTTAGTCTGTCTCACTGC
1 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
*
23579850 AACTTCAGGAGGATAAGACTTGCTTCCTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
* * *
23579915 GATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCTACTGCAA
131 GATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAA
*
23579980 CTTCAGGGAGATAGGATTATCG
196 CTTCAGGGAGATAGGATTGTCG
* * * * *
23580002 GCTTTATTCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATTTTCAGTCTGCTTCATTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
* * *
23580067 AACTTCAGGAGGATAAGGCTTGCTTACTTAGTCTTG-TCCACCGCAACTTTAGGGAGATAAGACT
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTC-TGCTCCACTGCAACTTCAGGGAGATAAGACT
* *
23580131 AGATGCGATCTGCTCTCTGTAACTTCAAAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGTA
130 AGATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCA
* * * *
23580196 ACTTCAGGAAAATAGGACTGCCG
195 ACTTCAGGGAGATAGGATTGTCG
* *
23580219 GCTTTAATCTGCTCTATTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
23580284 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
23580349 GATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAA
131 GATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAA
23580414 CTTCAGGGAGATAGGATTGTCG
196 CTTCAGGGAGATAGGATTGTCG
23580436 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
* *
23580501 AACTTTAGAAGGATAAGACTTGCTTACTTAGTC--CTCCACT
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACT
23580541 ATTGCTTAGG
Statistics
Matches: 492, Mismatches: 45, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
215 7 0.01
216 2 0.00
217 481 0.98
218 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (217 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
GATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAA
CTTCAGGGAGATAGGATTGTCG
Found at i:23580772 original size:132 final size:132
Alignment explanation
Indices: 23580534--23581100 Score: 981
Period size: 132 Copynumber: 4.3 Consensus size: 132
23580524 TTACTTAGTC
* *
23580534 CTCCACTATTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCGCTGCTGCTCAGGGAAA
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCTGCTCAGGGAAA
* * * *
23580599 CAAGGTTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCATCTTCGATC
66 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATC
23580664 TG
131 TG
*
23580666 TTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCTGCTCAGGGAAA
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCTGCTCAGGGAAA
23580731 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATC
66 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATC
23580796 TG
131 TG
* * * *
23580798 CTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTTCTCAGCTGCTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCTGCTCAGGGAAA
* *
23580863 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTAGAAAGATAAGATTCGCTGTCTTCGATC
66 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATC
23580928 TG
131 TG
* * *
23580930 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCTGCTCAGGGAAA
23580995 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATC
66 CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATC
23581060 TG
131 TG
*
23581062 CTCCACTACTGTTTAGGGAGATAAGATCTACAATTTTCA
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCA
23581101 CTGATTTGTT
Statistics
Matches: 414, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 414 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCTGCTCAGGGAAA
CAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATC
TG
Found at i:23580820 original size:44 final size:44
Alignment explanation
Indices: 23580772--23581088 Score: 170
Period size: 44 Copynumber: 7.2 Consensus size: 44
23580762 TATCTTGGAA
* *
23580772 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
** * * *
23580816 AGATAAGATCTACAAT-T-TTCAACCTTCT-CAGCTGCTGCTTAGGG
1 AGATAAGAT-T-CGCTGTCTTCAATCTGCTCCA-CTACTGCTTAGGG
* * * * * **
23580860 AGACAAGGCTT-GGTGGCTTAAATCTGCTTCCCACTA-T-CTTAGAA
1 AGATAA-GATTCGCTGTCTTCAATCTGC-T-CCACTACTGCTTAGGG
*
23580904 AGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * * *
23580948 AGATAAGA-TCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
1 AGATAAGATTC-GCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
23580992 AGACAAGGCTT-GGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTCGCTGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * *
23581036 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGTTTAGGG
1 AGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
23581080 AGATAAGAT
1 AGATAAGAT
23581089 CTACAATTTT
Statistics
Matches: 193, Mismatches: 58, Indels: 44
0.65 0.20 0.15
Matches are distributed among these distances:
42 13 0.07
43 16 0.08
44 143 0.74
45 11 0.06
46 8 0.04
47 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (44 bp):
AGATAAGATTCGCTGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:23582327 original size:21 final size:21
Alignment explanation
Indices: 23582298--23582343 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
23582288 TGGCCTCTCA
*
23582298 TTTTACTTTTTCTTTTTTC-CT
1 TTTTAC-TTTTCTTTTTCCTCT
*
23582319 TTTTCCTTTTCTTTTTCCTCT
1 TTTTACTTTTCTTTTTCCTCT
23582340 TTTT
1 TTTT
23582344 TTTGAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTACTTTTCTTTTTCCTCT
Found at i:23582341 original size:14 final size:14
Alignment explanation
Indices: 23582293--23582342 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
23582283 CACCTTGGCC
23582293 TCTCATTTTACTTTT
1 TCTC-TTTTACTTTT
* *
23582308 TCTTTTTTCCTTTT
1 TCTCTTTTACTTTT
23582322 TC-CTTTT-CTTTT
1 TCTCTTTTACTTTT
23582334 TCCTCTTTT
1 T-CTCTTTT
23582343 TTTTGAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 6 0.20
13 5 0.17
14 16 0.53
15 3 0.10
ACGTcount: A:0.04, C:0.24, G:0.00, T:0.72
Consensus pattern (14 bp):
TCTCTTTTACTTTT
Found at i:23585960 original size:75 final size:74
Alignment explanation
Indices: 23585874--23586017 Score: 279
Period size: 75 Copynumber: 1.9 Consensus size: 74
23585864 GACTCTAAAA
23585874 AAATGAAAATTTGGGAGTCGCCACCAATCTTTTATTGAGGTGTGATTGGATCACCTAAAAAACGG
1 AAATGAAAATTTGGGAGTCGCCACCAATCTTTTATTGAGGTGTGATTGGATCACCTAAAAAACGG
23585939 CTTTAGTCT
66 CTTTAGTCT
23585948 ANAATGAAAATTTGGGAGTCGCCACCAATCTTTTATTGAGGTGTGATTGGATCACCTAAAAAACG
1 A-AATGAAAATTTGGGAGTCGCCACCAATCTTTTATTGAGGTGTGATTGGATCACCTAAAAAACG
23586013 GCTTT
65 GCTTT
23586018 GGTATACGAG
Statistics
Matches: 69, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
74 1 0.01
75 68 0.99
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (74 bp):
AAATGAAAATTTGGGAGTCGCCACCAATCTTTTATTGAGGTGTGATTGGATCACCTAAAAAACGG
CTTTAGTCT
Found at i:23586467 original size:98 final size:98
Alignment explanation
Indices: 23586288--23586484 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
23586278 GTACAATAAA
* *
23586288 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAAGGCACAATT
*
23586353 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
*
23586386 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAAGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAAGGCACAATT
* *
23586451 CTTTTAAAATCTCAAACTCGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
23586484 A
1 A
23586485 TTATTTAAAA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAAGGCACAATT
CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:23586548 original size:100 final size:97
Alignment explanation
Indices: 23586290--23586548 Score: 263
Period size: 98 Copynumber: 2.6 Consensus size: 97
23586280 ACAATAAAAC
* * * * * *
23586290 TTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCC
1 TTTAAAAAAAAATCCACTTATCCAAGAATCAAGAAATCACACCCAATACGTTA-GGCACAATTCC
* *
23586355 TTTAGAATCCCAAACTCGGAATATTTCCTTTAC
65 TTTAAAATCCCAAACTCGGAATATTTCCTTTAA
* * * * *
23586388 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAAGGCACAATTCT
1 TTTAAAAAAAAATCCACTTATCCAAGAATCAAGAAATCACACCCAATACGTT-AGGCACAATTCC
*
23586453 TTTAAAATCTCAAACTCGGAATATTTCCTTTATTA
65 TTTAAAATCCCAAACTCGGAATATTTCCTTTA--A
* ** *
23586488 TTTAAAAAAAAATCTTCA-TT-T-CAAGAAATCAATACGTCACATCCAATACGTTAGGACACAA
1 TTTAAAAAAAAATC--CACTTATCCAAG-AATCAAGAAATCACACCCAATACGTTAGG-CACAA
23586549 CGTGTTGAAT
Statistics
Matches: 140, Mismatches: 14, Indels: 12
0.84 0.08 0.07
Matches are distributed among these distances:
98 90 0.64
99 8 0.06
100 38 0.27
101 2 0.01
102 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.29
Consensus pattern (97 bp):
TTTAAAAAAAAATCCACTTATCCAAGAATCAAGAAATCACACCCAATACGTTAGGCACAATTCCT
TTAAAATCCCAAACTCGGAATATTTCCTTTAA
Found at i:23587565 original size:19 final size:19
Alignment explanation
Indices: 23587541--23587613 Score: 119
Period size: 19 Copynumber: 3.8 Consensus size: 19
23587531 AATGATATAT
23587541 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
23587560 TCTAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
23587579 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
23587598 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
23587614 CTCAAAAATT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 48 1.00
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:23588129 original size:22 final size:22
Alignment explanation
Indices: 23588104--23588149 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
23588094 AAAGTAGTAG
* *
23588104 GCACTGAAGTGCGGAACGATAA
1 GCACCGAAGTGCGAAACGATAA
*
23588126 GCACCGAAGTGCGAAACGGTAA
1 GCACCGAAGTGCGAAACGATAA
23588148 GC
1 GC
23588150 GTTAAAGAGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.22, G:0.33, T:0.11
Consensus pattern (22 bp):
GCACCGAAGTGCGAAACGATAA
Found at i:23590784 original size:45 final size:41
Alignment explanation
Indices: 23590692--23590823 Score: 122
Period size: 45 Copynumber: 3.0 Consensus size: 41
23590682 ACAGATACAT
*
23590692 GGTGGATCAGCACATAGC-ACCACCCTTATAGTCAATGATACTC
1 GGTGGATCAGCACATAGCAACCA-CCTTATAATCAATG-TAC-C
23590735 GGTGGATTCAGCACATAGCAACCACCTTCATAATCAATAGTACC
1 GGTGGA-TCAGCACATAGCAACCACCTT-ATAATCAAT-GTACC
* * * *
23590779 AGGTGGAATCAACACACAACAACCACATTTATAATCAATGGTACC
1 -GGTGG-ATCAGCACATAGCAACCAC-CTTATAATCAAT-GTACC
23590824 CGGTACACGT
Statistics
Matches: 76, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
43 6 0.08
44 17 0.22
45 49 0.64
46 4 0.05
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.22
Consensus pattern (41 bp):
GGTGGATCAGCACATAGCAACCACCTTATAATCAATGTACC
Found at i:23591102 original size:17 final size:18
Alignment explanation
Indices: 23591073--23591106 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
23591063 TCAATTTAGT
23591073 CCAAAAATCACATTTTTG
1 CCAAAAATCACATTTTTG
23591091 CCAAAAAT-ACATTTTT
1 CCAAAAATCACATTTTT
23591107 ACCCCTAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.41, C:0.21, G:0.03, T:0.35
Consensus pattern (18 bp):
CCAAAAATCACATTTTTG
Found at i:23605355 original size:20 final size:21
Alignment explanation
Indices: 23605310--23605355 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
23605300 GCTCATCTGG
* *
23605310 TTTTGCTGCTGCTCCCTCCCT
1 TTTTCCTGCTGCTCCCGCCCT
*
23605331 GTTTCCTGCTGC-CCCGCCCT
1 TTTTCCTGCTGCTCCCGCCCT
23605351 TTTTC
1 TTTTC
23605356 TAATATTTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.00, C:0.43, G:0.15, T:0.41
Consensus pattern (21 bp):
TTTTCCTGCTGCTCCCGCCCT
Found at i:23609399 original size:21 final size:22
Alignment explanation
Indices: 23609370--23609416 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
23609360 CAGAAGGAGT
*
23609370 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
23609392 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
23609413 GAGT
1 GAGT
23609417 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:23614432 original size:28 final size:25
Alignment explanation
Indices: 23614376--23614432 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 25
23614366 TAATTTAGAG
*
23614376 ATCACTTAAACAAAAAAAATTAAAT
1 ATCACTTAAACAAAAAAAAATAAAT
*
23614401 ATCACTTATAACAAAAATAAAAATAAGT
1 ATCACTTA-AAC-AAAA-AAAAATAAAT
23614429 ATCA
1 ATCA
23614433 AAATATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 8 0.30
26 3 0.11
27 4 0.15
28 12 0.44
ACGTcount: A:0.61, C:0.12, G:0.02, T:0.25
Consensus pattern (25 bp):
ATCACTTAAACAAAAAAAAATAAAT
Found at i:23614567 original size:21 final size:21
Alignment explanation
Indices: 23614537--23614579 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
23614527 TTGAAGAAGA
*
23614537 AAGTTCAACCCACCAACTGGC
1 AAGTTCAACCCACCAACCGGC
*
23614558 AAGTTTAACCCACCAACCGGC
1 AAGTTCAACCCACCAACCGGC
23614579 A
1 A
23614580 TAAGCACACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.37, G:0.14, T:0.14
Consensus pattern (21 bp):
AAGTTCAACCCACCAACCGGC
Found at i:23616283 original size:25 final size:25
Alignment explanation
Indices: 23616250--23616299 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
23616240 AGAGGGATCC
** *
23616250 TGATGAAGTTCGCTAGCATGCTGCA
1 TGATGAAGTGAGCCAGCATGCTGCA
23616275 TGATGAAGTGAGCCAGCATGCTGCA
1 TGATGAAGTGAGCCAGCATGCTGCA
23616300 CCACCAGCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (25 bp):
TGATGAAGTGAGCCAGCATGCTGCA
Found at i:23621041 original size:11 final size:11
Alignment explanation
Indices: 23621025--23621084 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
23621015 TAAAAAAATT
23621025 TATTTTAAAAA
1 TATTTTAAAAA
23621036 TATTTT--AAA
1 TATTTTAAAAA
23621045 -A--TTAAAAA
1 TATTTTAAAAA
* *
23621053 -AATTAAAAAA
1 TATTTTAAAAA
23621063 GTATTTTAAAAA
1 -TATTTTAAAAA
23621075 TATTTTAAAA
1 TATTTTAAAA
23621085 TTAAAAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
6 2 0.05
8 5 0.12
9 3 0.08
10 6 0.15
11 16 0.40
12 8 0.20
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:23621051 original size:39 final size:39
Alignment explanation
Indices: 23621009--23621145 Score: 177
Period size: 39 Copynumber: 3.4 Consensus size: 39
23620999 ATTTTATTTT
*
23621009 AAAAATTAAAAAAATTTATTTTAAAAATATTTTAAAATTAA
1 AAAAATTAAAAAAA-GTATTTTAAAAATATTTTAAAATT-A
23621050 AAAAATT-AAAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATT-A
*
23621089 AAAAATTTTAAAAAAAAAGTATTTTAAAAGTATTTTAAAATTA
1 AAAAA--TT--AAAAAAAGTATTTTAAAAATATTTTAAAATTA
*
23621132 AAAAAATAAAAAAA
1 AAAAATTAAAAAAA
23621146 AATTTATTAT
Statistics
Matches: 88, Mismatches: 3, Indels: 12
0.85 0.03 0.12
Matches are distributed among these distances:
39 37 0.42
40 6 0.07
41 10 0.11
43 6 0.07
44 29 0.33
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (39 bp):
AAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTA
Found at i:23621106 original size:16 final size:17
Alignment explanation
Indices: 23621070--23621117 Score: 64
Period size: 16 Copynumber: 2.9 Consensus size: 17
23621060 AAAGTATTTT
23621070 AAAAATATTTTAAAATTA
1 AAAAATATTTTAAAA-TA
23621088 AAAAA-ATTTTAAAA-A
1 AAAAATATTTTAAAATA
*
23621103 AAAAGTATTTTAAAA
1 AAAAATATTTTAAAA
23621118 GTATTTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 5 0.18
16 9 0.32
17 9 0.32
18 5 0.18
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAAATATTTTAAAATA
Found at i:23621117 original size:11 final size:11
Alignment explanation
Indices: 23621103--23621128 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
23621093 ATTTTAAAAA
23621103 AAAAGTATTTT
1 AAAAGTATTTT
23621114 AAAAGTATTTT
1 AAAAGTATTTT
23621125 AAAA
1 AAAA
23621129 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:23621134 original size:17 final size:17
Alignment explanation
Indices: 23621003--23621117 Score: 76
Period size: 17 Copynumber: 6.6 Consensus size: 17
23620993 ACCAAAATTT
23621003 TATTTTAAAAATTAAAAA
1 TATTTT-AAAATTAAAAA
* **
23621021 -AATTT-ATTTTAAAAA
1 TATTTTAAAATTAAAAA
23621036 TATTTTAAAATTAAAAA
1 TATTTTAAAATTAAAAA
* **
23621053 AATTAAAAAAGTATTTTAAAAA
1 TATT-TTAAA--A--TTAAAAA
23621075 TATTTTAAAATTAAAAA
1 TATTTTAAAATTAAAAA
*
23621092 AATTTTAAAA--AAAAA
1 TATTTTAAAATTAAAAA
23621107 GTATTTTAAAA
1 -TATTTTAAAA
23621118 GTATTTTAAA
Statistics
Matches: 75, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
15 13 0.17
16 13 0.17
17 31 0.41
18 3 0.04
19 1 0.01
20 1 0.01
21 3 0.04
22 10 0.13
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
TATTTTAAAATTAAAAA
Found at i:23621146 original size:44 final size:44
Alignment explanation
Indices: 23621057--23621147 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
23621047 TAAAAAAATT
***
23621057 AAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATTTTAAA
1 AAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATAAAAAA
*
23621101 AAAAAAGTATTTTAAAAGTATTTTAAAATTAAAAAAATAAAAAA
1 AAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATAAAAAA
23621145 AAA
1 AAA
23621148 TTTATTATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (44 bp):
AAAAAAGTATTTTAAAAATATTTTAAAATTAAAAAAATAAAAAA
Found at i:23622506 original size:154 final size:152
Alignment explanation
Indices: 23622228--23622741 Score: 665
Period size: 154 Copynumber: 3.3 Consensus size: 152
23622218 CAATTGTTCG
* **
23622228 TATTTCGACCCTTTGTTCGTATTTTTTTC-GGATTTTATTA-TTTTAAAAAATATAATATTTTCT
1 TATTTCGACCCTTTGTTCGTATTTTTTCCTGGATTTTATTACTTCAAAAAAATATAATATTTTCT
*
23622291 AATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTCATTTAGTATGTTTTTT
66 AATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTCATTAAGTATGTTTTTT
23622356 AAATAAATTTAAAAAAAACCCT
131 AAATAAATTTAAAAAAAACCCT
* *
23622378 TATTTCGGCCCTTTGTTCGTATTTTTTCCTGGATTTTATTACATTCAATAAAAATATATTATTTT
1 TATTTCGACCCTTTGTTCGTATTTTTTCCTGGATTTTATTAC-TTCAA-AAAAATATAATATTTT
* * * * * *
23622443 CGT-ATTTTATTATTTTACATTGTTTTAGTACATTATGTTTGAAATGTATTAACTAATTTTGTTT
64 C-TAATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTCATTAAGTATGTTT
*
23622507 TTTAAATAAATTTAGTAAAAAACCCT
128 TTTAAATAAATTTA-AAAAAAACCCT
* * ** * *
23622533 TATTTTGACCCTTTGTTCGTATTTTTTCCTTAGATTTTATTACTTTTAAAAAATATACTATTTTT
1 TATTTCGACCCTTTGTTCGTATTTTTTCC-TGGATTTTATTACTTCAAAAAAATATAATATTTTC
* * * * *
23622598 TAATTTGATTATTTTACATTATTTTAGTACATTACAATTGAAATGTATTCATTCAGTGTGTTTTT
65 TAATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTCATTAAGTATGTTTTT
*
23622663 TAAATAAATTTTAAAAAAACCCCT
130 TAAATAAA-TTTAAAAAAAACCCT
* * * *
23622687 TATTTCGGCCATTTGTTCATATTTTTTCCCCGGATTTTATTACTTGCAATAAAAA
1 TATTTCGACCCTTTGTTCGTATTTTTT-CCTGGATTTTATTACTT-CAA-AAAAA
23622742 ACACACTAAA
Statistics
Matches: 312, Mismatches: 40, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
150 27 0.09
151 11 0.04
153 4 0.01
154 205 0.66
155 48 0.15
156 17 0.05
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.51
Consensus pattern (152 bp):
TATTTCGACCCTTTGTTCGTATTTTTTCCTGGATTTTATTACTTCAAAAAAATATAATATTTTCT
AATTTTATTATTTTACATTATTTTAGTACATTATATTTGAAATGTATTCATTAAGTATGTTTTTT
AAATAAATTTAAAAAAAACCCT
Found at i:23628599 original size:30 final size:30
Alignment explanation
Indices: 23628563--23628622 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
23628553 ACTCTCAGAT
23628563 AACTTTACCCTTTCAATCATTAAATGGCAC
1 AACTTTACCCTTTCAATCATTAAATGGCAC
23628593 AACTTTACCCTTTCAATCATTAAATGGCAC
1 AACTTTACCCTTTCAATCATTAAATGGCAC
23628623 CTTTCCCTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (30 bp):
AACTTTACCCTTTCAATCATTAAATGGCAC
Found at i:23632041 original size:21 final size:19
Alignment explanation
Indices: 23632017--23632068 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 19
23632007 TAAAATTTAA
23632017 AATTATTAAAAATATAATTTT
1 AATT-TTAAAAA-ATAATTTT
*
23632038 AATTTTAAAAAATAGTTTT
1 AATTTTAAAAAATAATTTT
23632057 ATATTTTTAAAA
1 A-A-TTTTAAAA
23632069 TTTTAAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 8 0.29
20 8 0.29
21 12 0.43
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
AATTTTAAAAAATAATTTT
Found at i:23632056 original size:19 final size:20
Alignment explanation
Indices: 23632017--23632069 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
23632007 TAAAATTTAA
23632017 AATTATTAAAAATATAATTTT
1 AATT-TTAAAAATATAATTTT
*
23632038 AATTTTAAAAA-ATAGTTTT
1 AATTTTAAAAATATAATTTT
*
23632057 ATATTTTTAAAAT
1 A-ATTTTAAAAAT
23632070 TTTAAAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 8 0.29
20 16 0.57
21 4 0.14
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
AATTTTAAAAATATAATTTT
Found at i:23654414 original size:22 final size:22
Alignment explanation
Indices: 23654389--23654433 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
23654379 ATAAATAATT
*
23654389 ATAAAACAATAATATATGATAA
1 ATAAAACAATAATAAATGATAA
* * *
23654411 ATAATATAATAATAAATGTTAA
1 ATAAAACAATAATAAATGATAA
23654433 A
1 A
23654434 ATATGCTCCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (22 bp):
ATAAAACAATAATAAATGATAA
Found at i:23654836 original size:20 final size:22
Alignment explanation
Indices: 23654802--23654854 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
23654792 AATTTAAAAA
*
23654802 TTTAAAAATTATAAAAGTTATT
1 TTTAAAAATTATAAAAATTATT
23654824 TTTAAAAA-T-TAAAAATTA--
1 TTTAAAAATTATAAAAATTATT
23654842 -TTAAAAATTATAA
1 TTTAAAAATTATAA
23654855 TTTTTTTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
17 7 0.25
18 1 0.04
19 3 0.11
20 8 0.29
21 1 0.04
22 8 0.29
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
TTTAAAAATTATAAAAATTATT
Found at i:23654837 original size:29 final size:31
Alignment explanation
Indices: 23654794--23654852 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
23654784 TTTTTTAAAA
*
23654794 TTTAAAAATTTAAAAATTA-TAAAAGTTATT
1 TTTAAAAATTTAAAAATTATTAAAAATTATT
23654824 TTTAAAAA-TTAAAAATTATTAAAAATTAT
1 TTTAAAAATTTAAAAATTATTAAAAATTAT
23654853 AATTTTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (31 bp):
TTTAAAAATTTAAAAATTATTAAAAATTATT
Found at i:23658518 original size:1 final size:1
Alignment explanation
Indices: 23658512--23658539 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
23658502 ATGCAAAATT
23658512 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
23658540 GGGAACTCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:23666170 original size:6 final size:6
Alignment explanation
Indices: 23666159--23666237 Score: 95
Period size: 6 Copynumber: 13.2 Consensus size: 6
23666149 TCTTTTTATG
* * * ** * *
23666159 TGTGTA TGTGTA TGTGTA TGTTTA TGTGTA TGTGTA TGTGCA TGTGCA
1 TGTGCA TGTGCA TGTGCA TGTGCA TGTGCA TGTGCA TGTGCA TGTGCA
23666207 TGTGCA TGTGCA TGTGCA TGTGCA TGTGCA T
1 TGTGCA TGTGCA TGTGCA TGTGCA TGTGCA T
23666238 TTATAATAAG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.16, C:0.09, G:0.32, T:0.43
Consensus pattern (6 bp):
TGTGCA
Found at i:23679014 original size:13 final size:14
Alignment explanation
Indices: 23678998--23679027 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
23678988 ATTTATAAAC
23678998 AATATTATG-ATAT
1 AATATTATGTATAT
23679011 AATATTATGTATAT
1 AATATTATGTATAT
23679025 AAT
1 AAT
23679028 CCCTTAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (14 bp):
AATATTATGTATAT
Found at i:23681873 original size:4 final size:4
Alignment explanation
Indices: 23681857--23681912 Score: 94
Period size: 4 Copynumber: 13.8 Consensus size: 4
23681847 GTAAGGGCAG
*
23681857 CATA CATTA CATA CATA CATA CATA CATA CATG CATA CATA CATA CATA
1 CATA CA-TA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
23681906 CATA CAT
1 CATA CAT
23681913 TCACATATAT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
4 45 0.92
5 4 0.08
ACGTcount: A:0.46, C:0.25, G:0.02, T:0.27
Consensus pattern (4 bp):
CATA
Found at i:23682489 original size:6 final size:6
Alignment explanation
Indices: 23682469--23682517 Score: 80
Period size: 6 Copynumber: 8.0 Consensus size: 6
23682459 TTTATCAATC
*
23682469 TCTGAT TCATGAT TCTGAT TCTGAT TCTGAT TCTGGT TCTGAT TCTGAT
1 TCTGAT TC-TGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT
23682518 ATGTTTGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
6 34 0.85
7 6 0.15
ACGTcount: A:0.16, C:0.16, G:0.18, T:0.49
Consensus pattern (6 bp):
TCTGAT
Found at i:23685310 original size:27 final size:27
Alignment explanation
Indices: 23685280--23685352 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 27
23685270 TGTCTTGAAT
23685280 TTGTTAGATATTGATTATGTTTTAAGC
1 TTGTTAGATATTGATTATGTTTTAAGC
23685307 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTG-----ATTATGTTTTAAGC
*
23685339 TTGTTGGATATTGA
1 TTGTTAGATATTGA
23685353 AATGATTGAC
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
27 14 0.35
32 26 0.65
ACGTcount: A:0.26, C:0.03, G:0.19, T:0.52
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTTAAGC
Found at i:23685332 original size:32 final size:32
Alignment explanation
Indices: 23685293--23685353 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
23685283 TTAGATATTG
23685293 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
*
23685325 ATTATGTTTTAAGCTTGTTGGATATTGAA
1 ATTATGTTTTAAGCTTGTTAGATATTGAA
23685354 ATGATTGACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.28, C:0.03, G:0.18, T:0.51
Consensus pattern (32 bp):
ATTATGTTTTAAGCTTGTTAGATATTGAATTT
Found at i:23686583 original size:20 final size:20
Alignment explanation
Indices: 23686558--23686595 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
23686548 ACAATTTAAA
23686558 ATATAAATTTATTAATATGT
1 ATATAAATTTATTAATATGT
23686578 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
23686596 ATGTAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
ATATAAATTTATTAATATGT
Found at i:23686707 original size:14 final size:14
Alignment explanation
Indices: 23686688--23686725 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
23686678 CCAGAAAAGT
23686688 AAATCATTTTCCAA
1 AAATCATTTTCCAA
*
23686702 AAATCATTTTTCGAA
1 AAATCA-TTTTCCAA
23686717 AAA-CATTTT
1 AAATCATTTT
23686726 ACTGGCAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 4 0.18
14 8 0.36
15 10 0.45
ACGTcount: A:0.42, C:0.16, G:0.03, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAA
Found at i:23686718 original size:15 final size:15
Alignment explanation
Indices: 23686688--23686725 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
23686678 CCAGAAAAGT
23686688 AAATCA-TTTTCCAA
1 AAATCATTTTTCCAA
*
23686702 AAATCATTTTTCGAA
1 AAATCATTTTTCCAA
23686717 AAA-CATTTT
1 AAATCATTTT
23686726 ACTGGCAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.42, C:0.16, G:0.03, T:0.39
Consensus pattern (15 bp):
AAATCATTTTTCCAA
Found at i:23696807 original size:18 final size:18
Alignment explanation
Indices: 23696784--23696818 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
23696774 TGTTCATATC
*
23696784 TATTGTTGAAAATAAGAT
1 TATTGTTAAAAATAAGAT
23696802 TATTGTTAAAAATAAGA
1 TATTGTTAAAAATAAGA
23696819 AATTGAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (18 bp):
TATTGTTAAAAATAAGAT
Found at i:23696823 original size:17 final size:18
Alignment explanation
Indices: 23696785--23696823 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
23696775 GTTCATATCT
* *
23696785 ATTGTTGAAAATAAGATT
1 ATTGTTAAAAATAAGATA
23696803 ATTGTTAAAAATAAGA-A
1 ATTGTTAAAAATAAGATA
23696820 ATTG
1 ATTG
23696824 AATTAAATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.36
Consensus pattern (18 bp):
ATTGTTAAAAATAAGATA
Found at i:23696984 original size:24 final size:25
Alignment explanation
Indices: 23696883--23696991 Score: 184
Period size: 25 Copynumber: 4.4 Consensus size: 25
23696873 GTGGAAAAAT
*
23696883 GATGAATTGATGGTAAAATGCAAAG
1 GATGAATTGACGGTAAAATGCAAAG
23696908 GATGAATTGACGGTAAAATGCAAAG
1 GATGAATTGACGGTAAAATGCAAAG
23696933 GATGAATTGACGGTAAAATGCAAAG
1 GATGAATTGACGGTAAAATGCAAAG
* *
23696958 GATGAATTGACGGT-ATATGCAAGG
1 GATGAATTGACGGTAAAATGCAAAG
23696982 GATGAATTGA
1 GATGAATTGA
23696992 TGACAAATGT
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
24 18 0.22
25 63 0.78
ACGTcount: A:0.41, C:0.06, G:0.29, T:0.23
Consensus pattern (25 bp):
GATGAATTGACGGTAAAATGCAAAG
Found at i:23699142 original size:22 final size:23
Alignment explanation
Indices: 23699117--23699173 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
23699107 TGCACTAATG
23699117 AACAGAGAGCACTA-AAGTGCTA
1 AACAGAGAGCACTAGAAGTGCTA
* *
23699139 AACAAAGAGCAC-AGATGTGCTA
1 AACAGAGAGCACTAGAAGTGCTA
*
23699161 AACGGAGAGCACT
1 AACAGAGAGCACT
23699174 GTTGTGCTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 1 0.03
22 28 0.97
ACGTcount: A:0.44, C:0.19, G:0.25, T:0.12
Consensus pattern (23 bp):
AACAGAGAGCACTAGAAGTGCTA
Found at i:23699179 original size:22 final size:22
Alignment explanation
Indices: 23699133--23699182 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
23699123 GAGCACTAAA
23699133 GTGCTAAACAAAGAGCACAGAT
1 GTGCTAAACAAAGAGCACAGAT
** * *
23699155 GTGCTAAACGGAGAGCACTGTT
1 GTGCTAAACAAAGAGCACAGAT
23699177 GTGCTA
1 GTGCTA
23699183 GTAATCAGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (22 bp):
GTGCTAAACAAAGAGCACAGAT
Found at i:23700175 original size:5 final size:5
Alignment explanation
Indices: 23700165--23700219 Score: 110
Period size: 5 Copynumber: 11.0 Consensus size: 5
23700155 TGTTTGTTTT
23700165 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
23700215 TATAA
1 TATAA
23700220 ACTTAACTTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 50 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:23704429 original size:22 final size:23
Alignment explanation
Indices: 23704404--23704451 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 23
23704394 AATTTTATGT
23704404 TTTTTTAA-ATATATTTTTATAA
1 TTTTTTAATATATATTTTTATAA
23704426 -TTTTTAATATATATTTTTATAA
1 TTTTTTAATATATATTTTTATAA
23704448 TTTT
1 TTTT
23704452 ATTATAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 7 0.29
22 14 0.58
23 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTTTTAATATATATTTTTATAA
Found at i:23704452 original size:21 final size:21
Alignment explanation
Indices: 23704406--23704477 Score: 87
Period size: 21 Copynumber: 3.4 Consensus size: 21
23704396 TTTTATGTTT
23704406 TTTTAA-ATATATTTTTATAA
1 TTTTAATATATATTTTTATAA
23704426 TTTTTAATATATATTTTTATAA
1 -TTTTAATATATATTTTTATAA
*
23704448 TTTTATTATA-AGTTTTTGA-AA
1 TTTTAATATATA-TTTTT-ATAA
23704469 TTTTAATAT
1 TTTTAATAT
23704478 TTTTTGTAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
20 1 0.02
21 30 0.65
22 15 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (21 bp):
TTTTAATATATATTTTTATAA
Found at i:23710167 original size:43 final size:43
Alignment explanation
Indices: 23710021--23710179 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
23710011 GATGTGTTTT
* * *
23710021 CGTGTAAGACCAAGTTTGGGACGTTGGCATCGAT-TTGAGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTA
* * * * * *
23710065 CGTGTAAGACCATGTCTGGGACATCGACATCG-TATATGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
23710107 CGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTA
*
23710150 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
23710180 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
42 29 0.31
43 36 0.38
44 29 0.31
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:23712224 original size:46 final size:46
Alignment explanation
Indices: 23712157--23712385 Score: 431
Period size: 46 Copynumber: 5.0 Consensus size: 46
23712147 CATGGCAAAG
23712157 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
* *
23712203 TGTGAAAAGTAAGTATGGTGTTTCGGTGAAGAAAATCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
23712249 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
23712295 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
*
23712341 TGTGAAAAGTAGGTATGGTGTTTCCGTGAAGAAAACCATACTGAG
1 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAG
23712386 GCAATGTGAA
Statistics
Matches: 178, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 178 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
Found at i:23736878 original size:43 final size:43
Alignment explanation
Indices: 23736586--23736859 Score: 458
Period size: 43 Copynumber: 6.3 Consensus size: 43
23736576 TCTGATGCGT
* * *
23736586 GATTTCGTGTAAGACCATAACTGAGCTATTGGCATCGATCTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
*
23736629 GATTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
23736672 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
23736715 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
23736758 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
* * **
23736801 GATTTTGTGTAAGACCATAGCTAGGCTATTGGCATCGATACGA
1 GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
*
23736844 GATTTCTATGTAAGAC
1 GATTTC-GTGTAAGAC
23736860 TATGTCTGGG
Statistics
Matches: 219, Mismatches: 11, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
43 211 0.96
44 8 0.04
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATTTGA
Found at i:23740099 original size:91 final size:90
Alignment explanation
Indices: 23739940--23740143 Score: 239
Period size: 91 Copynumber: 2.3 Consensus size: 90
23739930 CTCTGTTTTG
* * * * * * ** *
23739940 TGGATAAACCACTAGTG-TTGCAGGTTAATACACTGCCATTAGTAGTGAGTATACAATGGGTTTG
1 TGGATAAACCACCAGTGTTTGCAGGTTAATACACTACCAGTAGTAGTAAATACACAACAGGTTTA
23740004 CAGATAAAAGTTGCCAATAAAAATTA
66 CAGATAAAAGTTGCCAAT-AAAATTA
* * *
23740030 TGGATAAACCACCAGTGTTTGCTGGTTAATACGCTACCAGTAGTTGTAAATACACAACAGGTTTA
1 TGGATAAACCACCAGTGTTTGCAGGTTAATACACTACCAGTAGTAGTAAATACACAACAGGTTTA
* ** *
23740095 CAGATAAAATTTGCCAATAAGTTTG
66 CAGATAAAAGTTGCCAATAAAATTA
*
23740120 TGGACAAACCACCAGTGTTTGCAG
1 TGGATAAACCACCAGTGTTTGCAG
23740144 ATAAACTACC
Statistics
Matches: 95, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
90 42 0.44
91 53 0.56
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (90 bp):
TGGATAAACCACCAGTGTTTGCAGGTTAATACACTACCAGTAGTAGTAAATACACAACAGGTTTA
CAGATAAAAGTTGCCAATAAAATTA
Found at i:23744130 original size:27 final size:27
Alignment explanation
Indices: 23744078--23744131 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
23744068 TTGCTTAGTT
* *
23744078 TTAATAAAATATACATTTCATGCATTA
1 TTAATAAAATAAACATTTCATACATTA
*
23744105 TTAATTAAAATAAATATTTCA-ACATTA
1 TTAA-TAAAATAAACATTTCATACATTA
23744132 AAAAAACAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.48, C:0.09, G:0.02, T:0.41
Consensus pattern (27 bp):
TTAATAAAATAAACATTTCATACATTA
Found at i:23744706 original size:21 final size:21
Alignment explanation
Indices: 23744680--23744721 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
23744670 CTGCCAGTAA
*
23744680 GTTTGTGGATAAACCACCAGT
1 GTTTGTAGATAAACCACCAGT
*
23744701 GTTTGTAGATAAACTACCAGT
1 GTTTGTAGATAAACCACCAGT
23744722 AGGTTGTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (21 bp):
GTTTGTAGATAAACCACCAGT
Found at i:23744715 original size:44 final size:43
Alignment explanation
Indices: 23744667--23744802 Score: 125
Period size: 44 Copynumber: 3.1 Consensus size: 43
23744657 TTGCAGATAA
* *
23744667 AAACTGCCAGTAAGTTTGTGGATAAACCACCAGTGTTTGTAGAT
1 AAACTACCAGTAAGTTTGTGGATGAACCACCA-TGTTTGTAGAT
* * * * *
23744711 AAACTACCAGT-AGGTTGTGAATGCACAACGCA--TTTGAAGAT
1 AAACTACCAGTAAGTTTGTGGATGAACCAC-CATGTTTGTAGAT
* *
23744752 AAAAGCTACAAGTAAGTTTGTGGATGAACCACCAATGTTTGTAAAT
1 -AAA-CTACCAGTAAGTTTGTGGATGAACCACC-ATGTTTGTAGAT
23744798 AAACT
1 AAACT
23744803 GTCAGTAGGT
Statistics
Matches: 71, Mismatches: 14, Indels: 14
0.72 0.14 0.14
Matches are distributed among these distances:
41 8 0.11
42 3 0.04
43 21 0.30
44 29 0.41
45 3 0.04
46 7 0.10
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (43 bp):
AAACTACCAGTAAGTTTGTGGATGAACCACCATGTTTGTAGAT
Found at i:23744736 original size:87 final size:87
Alignment explanation
Indices: 23744590--23744877 Score: 351
Period size: 87 Copynumber: 3.3 Consensus size: 87
23744580 CCCGAACACT
* * * * * * * *
23744590 TAAGTTTATGGATGAACCACCATTGTTTGCAAATAAACTGCCACTTGGTTGTGAATGCACAATGT
1 TAAGTTTGTGGATAAACCACCAATGTTTGTAAATAAACTGCCAGTAGGTTGTGAATGCACAACGA
* * *
23744655 ATTTGCAGATAAAAACTGCCAG
66 ATTTGAAGATAAAAGCTGCAAG
* * * *
23744677 TAAGTTTGTGGATAAACCACCAGTGTTTGTAGATAAACTACCAGTAGGTTGTGAATGCACAACGC
1 TAAGTTTGTGGATAAACCACCAATGTTTGTAAATAAACTGCCAGTAGGTTGTGAATGCACAACGA
*
23744742 ATTTGAAGATAAAAGCTACAAG
66 ATTTGAAGATAAAAGCTGCAAG
* * * * *
23744764 TAAGTTTGTGGATGAACCACCAATGTTTGTAAATAAACTGTCAGTAGGTTGTGAGTGCGCAACAA
1 TAAGTTTGTGGATAAACCACCAATGTTTGTAAATAAACTGCCAGTAGGTTGTGAATGCACAACGA
* *
23744829 ATTTGTAGATAAAAGCTGCTAG
66 ATTTGAAGATAAAAGCTGCAAG
* *
23744851 TAAATTCGTGGATAAACCACCAATGTT
1 TAAGTTTGTGGATAAACCACCAATGTT
23744878 GCCAATTATT
Statistics
Matches: 172, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
87 172 1.00
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (87 bp):
TAAGTTTGTGGATAAACCACCAATGTTTGTAAATAAACTGCCAGTAGGTTGTGAATGCACAACGA
ATTTGAAGATAAAAGCTGCAAG
Found at i:23745018 original size:38 final size:38
Alignment explanation
Indices: 23744967--23745094 Score: 184
Period size: 38 Copynumber: 3.4 Consensus size: 38
23744957 ACAATATTGA
* *
23744967 AACAATAGACATGCTTAACGTGTATTCGATTCAACAGT
1 AACAATAGACATGCTTAACATGTATTCGGTTCAACAGT
* * *
23745005 AACAATAGACATGCTTATCATGTATTCGGCTCAACGGT
1 AACAATAGACATGCTTAACATGTATTCGGTTCAACAGT
* *
23745043 AACAATAGACATGTTTAACATGTATCCGGTTCAACAGT
1 AACAATAGACATGCTTAACATGTATTCGGTTCAACAGT
*
23745081 AACAATAGGCATGC
1 AACAATAGACATGC
23745095 AATCATTAAT
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 78 1.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (38 bp):
AACAATAGACATGCTTAACATGTATTCGGTTCAACAGT
Found at i:23745397 original size:12 final size:12
Alignment explanation
Indices: 23745380--23745404 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23745370 TGAGTCACAC
23745380 TCTGTGCCCGTG
1 TCTGTGCCCGTG
23745392 TCTGTGCCCGTG
1 TCTGTGCCCGTG
23745404 T
1 T
23745405 AACTCTCTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.32, G:0.32, T:0.36
Consensus pattern (12 bp):
TCTGTGCCCGTG
Found at i:23746842 original size:29 final size:29
Alignment explanation
Indices: 23746796--23746857 Score: 115
Period size: 29 Copynumber: 2.1 Consensus size: 29
23746786 TTTTTCATAT
*
23746796 AATCACATATATAGACATGAATTAAATTC
1 AATCACATATATACACATGAATTAAATTC
23746825 AATCACATATATACACATGAATTAAATTC
1 AATCACATATATACACATGAATTAAATTC
23746854 AATC
1 AATC
23746858 TATAATAATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.31
Consensus pattern (29 bp):
AATCACATATATACACATGAATTAAATTC
Found at i:23757439 original size:72 final size:72
Alignment explanation
Indices: 23757316--23757626 Score: 527
Period size: 72 Copynumber: 4.3 Consensus size: 72
23757306 AAAATCATAT
**
23757316 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
23757379 GACCAAAC
65 AACCAAAC
* *
23757387 ATAAACAACTATTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAACATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
23757452 ACCAAAC
66 ACCAAAC
*
23757459 ATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
23757524 ACCAAAC
66 ACCAAAC
*
23757531 ATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
23757596 ACCAAAC
66 ACCAAAC
*
23757603 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
23757627 TTTAGCATTG
Statistics
Matches: 228, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
71 25 0.11
72 203 0.89
ACGTcount: A:0.55, C:0.16, G:0.06, T:0.23
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:23764555 original size:38 final size:38
Alignment explanation
Indices: 23764468--23764590 Score: 110
Period size: 38 Copynumber: 3.2 Consensus size: 38
23764458 CTTATTGGTT
* *
23764468 GCATGCCTACTA-TCACTATTGAACTGAATACATGTTAAA
1 GCATTCCTACTACT-ACTGTTGAACTGAATACATGTT-AA
* * *
23764507 G-ACGT-ATACTATTA-TCGTTGAACTGAATACATGTTAA
1 GCA-TTCCTACTACTACT-GTTGAACTGAATACATGTTAA
**
23764544 GCATTCCTACTACTACTGTTGAACCAAATACATGTTAA
1 GCATTCCTACTACTACTGTTGAACTGAATACATGTTAA
*
23764582 GCATGCCTA
1 GCATTCCTA
23764591 TTGTTTCTGT
Statistics
Matches: 68, Mismatches: 10, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
37 5 0.07
38 60 0.88
39 3 0.04
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (38 bp):
GCATTCCTACTACTACTGTTGAACTGAATACATGTTAA
Found at i:23764829 original size:91 final size:91
Alignment explanation
Indices: 23764686--23764897 Score: 273
Period size: 91 Copynumber: 2.3 Consensus size: 91
23764676 GTTTAATAAT
* **
23764686 CTGCAAACATTGGTGGTTTATCCATAAACTTACTAGCAATTTTCATTTGCAAACACATTGTGCAT
1 CTGCAAACACTGGTGGTTTATCCATAAACTTACTAGCAATTTTCATCAGCAAACACATTGTGCAT
** *
23764751 TCACAACCTACTGGCAGTGTATTAAC
66 TCACAACCTACTGGCAGCATATAAAC
* * * *
23764777 TTGCAAACACTGGTGGTTTGTCCATAAACTTACTAGCAGCTTTT-ATCAGCAAACACGTTGTGCA
1 CTGCAAACACTGGTGGTTTATCCATAAACTTACTAGCA-ATTTTCATCAGCAAACACATTGTGCA
*
23764841 TTCACAACCTATTGGCAGCATATAAAC
65 TTCACAACCTACTGGCAGCATATAAAC
** * *
23764868 CTGCAAACACTGAAGGTTCATCCACAAACT
1 CTGCAAACACTGGTGGTTTATCCATAAACT
23764898 GGAGTGTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
91 99 0.96
92 4 0.04
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.30
Consensus pattern (91 bp):
CTGCAAACACTGGTGGTTTATCCATAAACTTACTAGCAATTTTCATCAGCAAACACATTGTGCAT
TCACAACCTACTGGCAGCATATAAAC
Found at i:23773172 original size:92 final size:91
Alignment explanation
Indices: 23773015--23773223 Score: 278
Period size: 92 Copynumber: 2.3 Consensus size: 91
23773005 TTGATTTTAG
* * *
23773015 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTAT
* *
23773080 ATTTAAT-ATTAATTATTTTAAATTGTA
65 ATGTAATAATT-ATTATTTTAAATTATA
*
23773107 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATT-TAATATTAATTATTAAATTA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTAT-ATA-TAACTATTAAATTA
23773171 TATGTAATAATTATTATTTTAAATTATA
64 TATGTAATAATTATTATTTTAAATTATA
* * * *
23773199 CAAATTCATAAAATATAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
23773224 GTTATAATTA
Statistics
Matches: 104, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
90 1 0.01
91 29 0.28
92 71 0.68
93 3 0.03
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATAACTATTAAATTATA
TGTAATAATTATTATTTTAAATTATA
Found at i:23773186 original size:24 final size:25
Alignment explanation
Indices: 23773151--23773198 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
23773141 TTATGAAATT
23773151 TAATATTAATTA-TTAAATTATATG
1 TAATATTAATTATTTAAATTATATG
23773175 TAATAATT-ATTATTTTAAATTATA
1 TAAT-ATTAATTA-TTTAAATTATA
23773199 CAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATATTAATTATTTAAATTATATG
Found at i:23773394 original size:16 final size:16
Alignment explanation
Indices: 23773373--23773417 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
23773363 TTATTAAATT
*
23773373 ATATATTTTAATTATA
1 ATATATTTTAATAATA
23773389 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
*
23773404 ATTATATTTAAATA
1 A-TATATTTTAATA
23773418 TGATATTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 10 0.40
16 9 0.36
17 6 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:23773402 original size:18 final size:16
Alignment explanation
Indices: 23773373--23773414 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
23773363 TTATTAAATT
*
23773373 ATATATTTTAATTAT-A
1 ATATA-TTTAATAATAA
23773389 ATATATTTAATAATAA
1 ATATATTTAATAATAA
*
23773405 TTATATTTAA
1 ATATATTTAA
23773415 ATATGATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATATTTAATAATAA
Found at i:23775940 original size:95 final size:95
Alignment explanation
Indices: 23775777--23775962 Score: 309
Period size: 95 Copynumber: 2.0 Consensus size: 95
23775767 AACCGTTAAA
* * *
23775777 GAGTTTTCATATGTGTTTCCCGATGAGTTACTGAGGTTATCTCCAGATCGTGAGGGAGAGTTCAG
1 GAGTTTTCATATGTGTTTCCCGAGGAGTTACTGAGGTTACCTCCAGATCGTGAGGGAGAATTCAG
23775842 AATTGAATTGTTGCCAAGAATCGCTCTAGT
66 AATTGAATTGTTGCCAAGAATCGCTCTAGT
* *
23775872 GAGTTTTCATATGTGTTTCCCGAGGAGTTACTGAGGTTACCTTCAGGTCGTGAGGGAGAATTCAG
1 GAGTTTTCATATGTGTTTCCCGAGGAGTTACTGAGGTTACCTCCAGATCGTGAGGGAGAATTCAG
* *
23775937 AATTGAATTGTTTCCAGGAATCGCTC
66 AATTGAATTGTTGCCAAGAATCGCTC
23775963 CAATGTCCAT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 84 1.00
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (95 bp):
GAGTTTTCATATGTGTTTCCCGAGGAGTTACTGAGGTTACCTCCAGATCGTGAGGGAGAATTCAG
AATTGAATTGTTGCCAAGAATCGCTCTAGT
Found at i:23792930 original size:31 final size:32
Alignment explanation
Indices: 23792895--23792963 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
23792885 ATTAGTACCT
* *
23792895 AAATTTGAGATTTTTTT-TTAATTTGGTACTG
1 AAATTTGACATTTTTTTCTTAAGTTGGTACTG
* * *
23792926 AAATTTGACCTTTTTTTCTTAAGTTGGTAGTT
1 AAATTTGACATTTTTTTCTTAAGTTGGTACTG
23792958 AAATTT
1 AAATTT
23792964 ATTGGGATCC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 15 0.47
32 17 0.53
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (32 bp):
AAATTTGACATTTTTTTCTTAAGTTGGTACTG
Found at i:23794451 original size:20 final size:19
Alignment explanation
Indices: 23794423--23794473 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
23794413 AAGTTTTTCC
* *
23794423 AAAATAAATTTAAAAATTTT
1 AAAAAAAATTTAAAAA-TCT
*
23794443 AAAAAAAATTGAAAAATCT
1 AAAAAAAATTTAAAAATCT
23794462 AAAGAAAAATTT
1 AAA-AAAAATTT
23794474 CAACTGAGCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (19 bp):
AAAAAAAATTTAAAAATCT
Found at i:23796799 original size:49 final size:49
Alignment explanation
Indices: 23796677--23796799 Score: 151
Period size: 49 Copynumber: 2.5 Consensus size: 49
23796667 GAGGTCCCCC
* *
23796677 GTAAGACCATGTCTGAGACATGGCATGGGCACCGATATGAGAACTCCCAT
1 GTAAGACCATGTCTGAGACATGGCATGGGCA-CGAAAAGAGAACTCCCAT
* * *
23796727 GTAAGACCATATCTGAGATATGGCATTGGCA-GTAAAAGA-AACATCCCAT
1 GTAAGACCATGTCTGAGACATGGCATGGGCACG-AAAAGAGAAC-TCCCAT
*
23796776 GTAAGACCATGTCTGGGACATGGC
1 GTAAGACCATGTCTGAGACATGGC
23796800 TTTGACATGT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
48 4 0.06
49 31 0.49
50 28 0.44
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (49 bp):
GTAAGACCATGTCTGAGACATGGCATGGGCACGAAAAGAGAACTCCCAT
Found at i:23803050 original size:19 final size:19
Alignment explanation
Indices: 23803026--23803085 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
23803016 AAAGTTTAGA
23803026 AAATTTGTCGACTTGTGAT
1 AAATTTGTCGACTTGTGAT
** * *
23803045 AAATTT-TAAAGTT-T-AG
1 AAATTTGTCGACTTGTGAT
23803061 AAATTTGTCGACTTGTGAT
1 AAATTTGTCGACTTGTGAT
23803080 AAATTT
1 AAATTT
23803086 TTGGATGTGA
Statistics
Matches: 30, Mismatches: 8, Indels: 6
0.68 0.18 0.14
Matches are distributed among these distances:
16 7 0.23
17 5 0.17
18 5 0.17
19 13 0.43
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (19 bp):
AAATTTGTCGACTTGTGAT
Found at i:23803072 original size:35 final size:36
Alignment explanation
Indices: 23803004--23803086 Score: 143
Period size: 35 Copynumber: 2.3 Consensus size: 36
23802994 CATGGATTGG
23803004 GTGA-AAATTATTAAAGTTTAGAAAATTTGTCGACTT
1 GTGATAAATT-TTAAAGTTTAGAAAATTTGTCGACTT
23803040 GTGATAAATTTTAAAGTTTAG-AAATTTGTCGACTT
1 GTGATAAATTTTAAAGTTTAGAAAATTTGTCGACTT
23803075 GTGATAAATTTT
1 GTGATAAATTTT
23803087 TGGATGTGAT
Statistics
Matches: 46, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
35 26 0.57
36 15 0.33
37 5 0.11
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (36 bp):
GTGATAAATTTTAAAGTTTAGAAAATTTGTCGACTT
Found at i:23804493 original size:39 final size:39
Alignment explanation
Indices: 23804442--23804532 Score: 137
Period size: 39 Copynumber: 2.3 Consensus size: 39
23804432 TCAAAATAGT
*
23804442 AAAACTACTCCTATTCACCCTTTACTTCCTATAATATAA
1 AAAACTACTCCTATTCACCCTCTACTTCCTATAATATAA
* * * *
23804481 AAAATTACTCCTATTCATCCTCTACTTCTTATAATATAG
1 AAAACTACTCCTATTCACCCTCTACTTCCTATAATATAA
23804520 AAAACTACTCCTA
1 AAAACTACTCCTA
23804533 AAATAAGTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.36, C:0.26, G:0.01, T:0.36
Consensus pattern (39 bp):
AAAACTACTCCTATTCACCCTCTACTTCCTATAATATAA
Done.