Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 82 of 153
Found at i:26056873 original size:145 final size:147
Alignment explanation
Indices: 26056537--26056887 Score: 460
Period size: 145 Copynumber: 2.4 Consensus size: 147
26056527 CGTGCGAGCC
* * * *
26056537 GAGGCTCAACTCAC-CTCTCGCAATATGAGTTGATTTTTGAAAAAACAGAAATTGAAATTACCTC
1 GAGGCTCAACTC-CTTTCTCGCAATATGAGTTGA-TTTTGGAAAAGCAGAAATTGAAAATACCTC
* ** *
26056601 AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAACTTG
64 AACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-ATAATTTTGAAAAGCAGAAATTG
*
26056666 AAAATTCCTCAACGTGTCTT
128 AAAATTCCTCAACGTGTCCT
*
26056686 GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTT-GAAAAGCAGAAATTGAAAATACCTCA
1 GAGGCTCAACTCCTTTCTCGCAATATGAGTTG-ATTTTGGAAAAGCAGAAATTGAAAATACCTCA
* **
26056750 ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT-TAATTTTGAAAA-CAGAAATTG-A
65 ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTATAATTTTGAAAAGCAGAAATTGAA
*
26056812 AATTACCTCAATGTGTCCT
130 AATT-CCTCAACGTGTCCT
* * * *
26056831 GAGGCTCAACTCCTTTCTTGCAATATGAGCTGATTTTGGAAAAGTAGAATTTGAAAA
1 GAGGCTCAACTCCTTTCTCGCAATATGAGTTGATTTTGGAAAAGCAGAAATTGAAAA
26056888 GCATAAATTG
Statistics
Matches: 179, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
144 10 0.06
145 66 0.37
146 10 0.06
148 59 0.33
149 33 0.18
150 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (147 bp):
GAGGCTCAACTCCTTTCTCGCAATATGAGTTGATTTTGGAAAAGCAGAAATTGAAAATACCTCAA
CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTATAATTTTGAAAAGCAGAAATTGAAA
ATTCCTCAACGTGTCCT
Found at i:26057248 original size:88 final size:87
Alignment explanation
Indices: 26056973--26057250 Score: 245
Period size: 88 Copynumber: 3.1 Consensus size: 87
26056963 AGTTGATTTT
* * * * **
26056973 TTTGAAAAGCAGAACTTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
1 TTTGAAAAACAGAA-TTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
26057038 AGTTAATTTTTTTTTTGAAAAGCAGAAA
65 AGTTGA---TTTTTTTG-AAAGCAG-AA
* ** * * * * *
26057066 TTGGAAAAAACATCTATTGAAAATACCTCGGCGTATGACCTGAGGCTCCATTCACCTCTAGCAAT
1 TTTG-AAAAACA-GAATTGAAAATACCTCAGC--ATGTCCTGAGGCTCAACTCACCTCTCGCAAT
* * *
26057131 ATGAATTGA--TTTTTGAAAACATAA
62 ATGAGTTGATTTTTTTGAAAGCAGAA
* * *
26057155 ATTGAAAAACAGGAATGGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATG
1 TTTGAAAAACA-GAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATG
*
26057220 AGTTGATTTTTTTGAAAGTAGAA
65 AGTTGATTTTTTTGAAAGCAGAA
26057243 TTTGAAAA
1 TTTGAAAA
26057251 TACCTCGGCG
Statistics
Matches: 144, Mismatches: 35, Indels: 17
0.73 0.18 0.09
Matches are distributed among these distances:
86 34 0.24
88 41 0.28
89 4 0.03
90 5 0.03
91 6 0.04
93 3 0.02
94 20 0.14
95 1 0.01
96 30 0.21
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (87 bp):
TTTGAAAAACAGAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTGAAAGCAGAA
Found at i:26057385 original size:84 final size:84
Alignment explanation
Indices: 26057267--26057804 Score: 773
Period size: 84 Copynumber: 6.6 Consensus size: 84
26057257 GGCGTGCCCC
26057267 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTGA
26057332 AAATATCTCAACGCGTCTT
66 AAATATCTCAACGCGTCTT
26057351 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTGA
26057416 AAATATCTCAACGCGTCTT
66 AAATATCTCAACGCGTCTT
26057435 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTGA
26057500 AAATATCTCAACGCGTCTT
66 AAATATCTCAACGCGTCTT
26057519 GAGGCTCCAACTCA-CTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTG
1 GAGGCT-CAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTG
26057583 AAAATATCTCAACGCGTCTT
65 AAAATATCTCAACGCGTCTT
*
26057603 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTG------A-AAA--G--CAGAAATT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-TTGAAAAACATAAATTGAACAGGAATT
* * *
26057657 GAAAATACCTCAATGTGTCTT
64 GAAAATATCTCAACGCGTCTT
*
26057678 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTG------A-AAA--G--CAGAAATT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-TTGAAAAACATAAATTGAACAGGAATT
* * *
26057732 GAAAATACCTCAATGTGTCTT
64 GAAAATATCTCAACGCGTCTT
*
26057753 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACAAAAATT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACATAAATT
26057805 TAAAAGAAAT
Statistics
Matches: 438, Mismatches: 4, Indels: 26
0.94 0.01 0.06
Matches are distributed among these distances:
74 3 0.01
75 137 0.31
77 1 0.00
79 4 0.01
80 4 0.01
83 7 0.02
84 269 0.61
85 10 0.02
86 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (84 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAACAGGAATTGA
AAATATCTCAACGCGTCTT
Found at i:26057701 original size:75 final size:75
Alignment explanation
Indices: 26057578--26057809 Score: 405
Period size: 75 Copynumber: 3.1 Consensus size: 75
26057568 ATTGAACAGG
* * *
26057578 AATTGAAAATATCTCAACGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTT
1 AATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTT
26057643 GAAAAGCAGA
66 GAAAAGCAGA
26057653 AATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTT
1 AATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTT
26057718 GAAAAGCAGA
66 GAAAAGCAGA
26057728 AATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-TT
1 AATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTT
*
26057792 GAAAA-CAAA
66 GAAAAGCAGA
*
26057801 AATTTAAAA
1 AATTGAAAA
26057810 GAAATACCTC
Statistics
Matches: 152, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
73 11 0.07
74 7 0.05
75 134 0.88
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (75 bp):
AATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTT
GAAAAGCAGA
Found at i:26072032 original size:16 final size:16
Alignment explanation
Indices: 26072011--26072042 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26072001 TTTTGTGTAA
*
26072011 TGGGCTGTTAGTTTAG
1 TGGGCTGGTAGTTTAG
26072027 TGGGCTGGTAGTTTAG
1 TGGGCTGGTAGTTTAG
26072043 GTTATTGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.12, C:0.06, G:0.41, T:0.41
Consensus pattern (16 bp):
TGGGCTGGTAGTTTAG
Found at i:26086026 original size:43 final size:43
Alignment explanation
Indices: 26085965--26086049 Score: 170
Period size: 43 Copynumber: 2.0 Consensus size: 43
26085955 ATCGCTATTA
26085965 GTGTAAACAGCATCGTGTAGCCTAACATCCCGACCCACAGCTT
1 GTGTAAACAGCATCGTGTAGCCTAACATCCCGACCCACAGCTT
26086008 GTGTAAACAGCATCGTGTAGCCTAACATCCCGACCCACAGCT
1 GTGTAAACAGCATCGTGTAGCCTAACATCCCGACCCACAGCT
26086050 CATGTGAGCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.28, C:0.33, G:0.19, T:0.20
Consensus pattern (43 bp):
GTGTAAACAGCATCGTGTAGCCTAACATCCCGACCCACAGCTT
Found at i:26086350 original size:14 final size:14
Alignment explanation
Indices: 26086331--26086357 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26086321 AAAGGGACAT
26086331 TTGAAATGAAAATC
1 TTGAAATGAAAATC
26086345 TTGAAATGAAAAT
1 TTGAAATGAAAAT
26086358 GTGAAATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.04, G:0.15, T:0.30
Consensus pattern (14 bp):
TTGAAATGAAAATC
Found at i:26086364 original size:13 final size:14
Alignment explanation
Indices: 26086332--26086365 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
26086322 AAGGGACATT
*
26086332 TGAAATGAAAATCT
1 TGAAATGAAAATCG
26086346 TGAAATGAAAAT-G
1 TGAAATGAAAATCG
26086359 TGAAATG
1 TGAAATG
26086366 TTAAATGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.50, C:0.03, G:0.21, T:0.26
Consensus pattern (14 bp):
TGAAATGAAAATCG
Found at i:26088797 original size:23 final size:23
Alignment explanation
Indices: 26088771--26088816 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
26088761 TTGAAAAAAC
26088771 ATGAAAATGATGTTAAAGTAGAG
1 ATGAAAATGATGTTAAAGTAGAG
26088794 ATGAAAATGATGTTAAAGTAGAG
1 ATGAAAATGATGTTAAAGTAGAG
26088817 TTTTCTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (23 bp):
ATGAAAATGATGTTAAAGTAGAG
Found at i:26092457 original size:28 final size:27
Alignment explanation
Indices: 26092409--26092462 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
26092399 TACATACATA
26092409 TGTATAATAAAAATAATTTAATATAGGT
1 TGTATAATAAAAATAATTTAA-ATAGGT
26092437 TGTATACAT-AAAA-AATATTAAATAGG
1 TGTATA-ATAAAAATAAT-TTAAATAGG
26092463 GATATTATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 8 0.33
28 14 0.58
29 2 0.08
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.35
Consensus pattern (27 bp):
TGTATAATAAAAATAATTTAAATAGGT
Found at i:26093770 original size:15 final size:15
Alignment explanation
Indices: 26093752--26093782 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26093742 GGTTAGGGTT
26093752 ATTGGGCTTAGGCTA
1 ATTGGGCTTAGGCTA
*
26093767 ATTGGGTTTAGGCTA
1 ATTGGGCTTAGGCTA
26093782 A
1 A
26093783 GGCTAATTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.10, G:0.32, T:0.35
Consensus pattern (15 bp):
ATTGGGCTTAGGCTA
Found at i:26093785 original size:21 final size:21
Alignment explanation
Indices: 26093756--26093798 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
26093746 AGGGTTATTG
*
26093756 GGCTTAGGCTAATTGGGTTTA
1 GGCTAAGGCTAATTGGGTTTA
26093777 GGCTAAGGCTAATTGGGTTTA
1 GGCTAAGGCTAATTGGGTTTA
26093798 G
1 G
26093799 TGTTTGGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.21, C:0.09, G:0.35, T:0.35
Consensus pattern (21 bp):
GGCTAAGGCTAATTGGGTTTA
Found at i:26093919 original size:15 final size:14
Alignment explanation
Indices: 26093874--26093920 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
26093864 ACTTTTAATA
26093874 ATTTTGTTTTTATTT
1 ATTTT-TTTTTATTT
* *
26093889 -TTATTTTTTATAT
1 ATTTTTTTTTATTT
26093902 ATTTTTTGTTTATTT
1 ATTTTTT-TTTATTT
26093917 ATTT
1 ATTT
26093921 GATTTAGGCC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 8 0.31
14 8 0.31
15 10 0.38
ACGTcount: A:0.17, C:0.00, G:0.04, T:0.79
Consensus pattern (14 bp):
ATTTTTTTTTATTT
Found at i:26096810 original size:22 final size:24
Alignment explanation
Indices: 26096769--26096818 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
26096759 TTATTGATTG
*
26096769 GTTTTTTAATTTTATTTTTA-AAA
1 GTTTTTCAATTTTATTTTTAGAAA
*
26096792 GTTTTTCATTTTTA-TTTTAGAAA
1 GTTTTTCAATTTTATTTTTAGAAA
26096815 -TTTT
1 GTTTT
26096819 AGAACATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (24 bp):
GTTTTTCAATTTTATTTTTAGAAA
Found at i:26100968 original size:31 final size:30
Alignment explanation
Indices: 26100903--26100984 Score: 116
Period size: 29 Copynumber: 2.8 Consensus size: 30
26100893 AGAACTGAAC
26100903 AAAATTAAAATTATCCAAAAT-TATTATTT
1 AAAATTAAAATTATCCAAAATGTATTATTT
*
26100932 AAAATTAAAATATATACAAAATGTA-TATATT
1 AAAATTAAAAT-TATCCAAAATGTATTAT-TT
26100963 AAAATT-AAATTATCCAAAATGT
1 AAAATTAAAATTATCCAAAATGT
26100985 GAGAGATGGA
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
29 22 0.46
30 16 0.33
31 10 0.21
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (30 bp):
AAAATTAAAATTATCCAAAATGTATTATTT
Found at i:26101032 original size:5 final size:6
Alignment explanation
Indices: 26101018--26101042 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
26101008 TGGGTTTTTT
26101018 AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA A
26101043 TTATTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:26101151 original size:52 final size:48
Alignment explanation
Indices: 26101083--26101220 Score: 118
Period size: 52 Copynumber: 2.7 Consensus size: 48
26101073 AAAATTATTG
* *
26101083 TTTTTTAAAAATTATTTGTGTGTTTTTTATATTT-TAAAATTTTATATATTAT
1 TTTTTTCAAAA-TATTT-TGT-TTTTTTATATTTCTAAAA-TTTAT-CATTAT
*
26101135 TTTTTTCAACAATATTTT-TTATTTTTATATTTTCTAAAATTTATCATTGT
1 TTTTTTCAA-AATATTTTGTT-TTTTTATA-TTTCTAAAATTTATCATTAT
* *
26101185 TGTTTTGAAAATATTTATGTATTTTTATATATTTCT
1 TTTTTTCAAAATATTT-TGT-TTTTT-TATATTTCT
26101221 TTAAATTTTT
Statistics
Matches: 73, Mismatches: 5, Indels: 17
0.77 0.05 0.18
Matches are distributed among these distances:
49 8 0.11
50 21 0.29
51 19 0.26
52 23 0.32
53 2 0.03
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.62
Consensus pattern (48 bp):
TTTTTTCAAAATATTTTGTTTTTTTATATTTCTAAAATTTATCATTAT
Found at i:26101165 original size:50 final size:49
Alignment explanation
Indices: 26101106--26101214 Score: 123
Period size: 50 Copynumber: 2.2 Consensus size: 49
26101096 ATTTGTGTGT
* * *
26101106 TTTTTATATTT-TAAAATTTTATATATTATTTTTTTCAACAATATTT-TTTA
1 TTTTTATATTTCTAAAA-TTTAT-CATTATTGTTTTCAA-AATATTTATGTA
* *
26101156 TTTTTATATTTTCTAAAATTTATCATTGTTGTTTTGAAAATATTTATGTA
1 TTTTTATA-TTTCTAAAATTTATCATTATTGTTTTCAAAATATTTATGTA
26101206 TTTTTATAT
1 TTTTTATAT
26101215 ATTTCTTTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
49 8 0.16
50 30 0.59
51 8 0.16
52 5 0.10
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (49 bp):
TTTTTATATTTCTAAAATTTATCATTATTGTTTTCAAAATATTTATGTA
Found at i:26102688 original size:21 final size:21
Alignment explanation
Indices: 26102637--26102691 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
26102627 TTTTTTCTTT
26102637 AAAAAAA-CAAAAATCGCAAA
1 AAAAAAAGCAAAAATCGCAAA
26102657 AAAAAAAGCAAAAAGT-GCAAA
1 AAAAAAAGCAAAAA-TCGCAAA
**
26102678 AAAAACCGCAAAAA
1 AAAAAAAGCAAAAA
26102692 AAAGTTGCCT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
20 7 0.23
21 23 0.74
22 1 0.03
ACGTcount: A:0.73, C:0.15, G:0.09, T:0.04
Consensus pattern (21 bp):
AAAAAAAGCAAAAATCGCAAA
Found at i:26108271 original size:31 final size:31
Alignment explanation
Indices: 26108235--26108296 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
26108225 AGATAATTTT
26108235 AAAGAGTTTTATTAGGATTCAATTGCTCTTG
1 AAAGAGTTTTATTAGGATTCAATTGCTCTTG
26108266 AAAGAGTTTTATTAGGATTCAATTGCTCTTG
1 AAAGAGTTTTATTAGGATTCAATTGCTCTTG
26108297 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTGCTCTTG
Found at i:26109613 original size:30 final size:30
Alignment explanation
Indices: 26109553--26109613 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 30
26109543 TTAAACCGAT
* *
26109553 TTTTATAATTTATATATATTTTGATTTTTGA
1 TTTTATAATTTATATATATATTGA-CTTTGA
26109584 TTTTATAATTTTATATATATATTG-CTTTGA
1 TTTTATAA-TTTATATATATATTGACTTTGA
26109614 ATTGGTTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 5 0.19
31 8 0.30
32 14 0.52
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.62
Consensus pattern (30 bp):
TTTTATAATTTATATATATATTGACTTTGA
Found at i:26112782 original size:3 final size:3
Alignment explanation
Indices: 26112768--26112802 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
26112758 CTACTGCTTA
*
26112768 TCC TCT TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
26112803 ATCATCATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (3 bp):
TCC
Found at i:26114775 original size:3 final size:3
Alignment explanation
Indices: 26114761--26114795 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
26114751 CTACTGCTTA
*
26114761 TCC TCT TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC
26114796 ATCATCATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (3 bp):
TCC
Found at i:26119021 original size:21 final size:21
Alignment explanation
Indices: 26118983--26119022 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26118973 TTGTCCAGCT
* * *
26118983 TCCGGCGGGGGTTGTGGTTGA
1 TCCGGCGGAGATTCTGGTTGA
26119004 TCCGGCGGAGATTCTGGTT
1 TCCGGCGGAGATTCTGGTT
26119023 CCTCCGGTAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.07, C:0.17, G:0.45, T:0.30
Consensus pattern (21 bp):
TCCGGCGGAGATTCTGGTTGA
Found at i:26119311 original size:18 final size:18
Alignment explanation
Indices: 26119285--26119327 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
26119275 GACTCGAAAA
* * *
26119285 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
26119303 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
26119321 AGGATAC
1 AGGATAC
26119328 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:26121345 original size:22 final size:22
Alignment explanation
Indices: 26121317--26121373 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 22
26121307 AAATATGGAT
26121317 TTGAGAGAAATTTG-GAAGGAAA
1 TTGAGAGAAATTTGAG-AGGAAA
26121339 TTGAGAGCAAA-TTGAGAGGAAA
1 TTGAGAG-AAATTTGAGAGGAAA
*
26121361 CTGAGAGGAAATT
1 TTGAGA-GAAATT
26121374 GATAGAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
22 24 0.80
23 6 0.20
ACGTcount: A:0.44, C:0.04, G:0.32, T:0.21
Consensus pattern (22 bp):
TTGAGAGAAATTTGAGAGGAAA
Found at i:26121374 original size:22 final size:22
Alignment explanation
Indices: 26121333--26121375 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26121323 GAAATTTGGA
*
26121333 AGGAAATTGAGAGCAAATTGAG
1 AGGAAACTGAGAGCAAATTGAG
*
26121355 AGGAAACTGAGAGGAAATTGA
1 AGGAAACTGAGAGCAAATTGA
26121376 TAGAATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.33, T:0.16
Consensus pattern (22 bp):
AGGAAACTGAGAGCAAATTGAG
Found at i:26122522 original size:17 final size:17
Alignment explanation
Indices: 26122500--26122532 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26122490 TTATATAAAA
26122500 TTTATT-TTATTGTTAAT
1 TTTATTATTATT-TTAAT
26122517 TTTATTATTATTTTAA
1 TTTATTATTATTTTAA
26122533 AGACATTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTATTATTATTTTAAT
Found at i:26122545 original size:30 final size:30
Alignment explanation
Indices: 26122509--26122571 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
26122499 ATTTATTTTA
26122509 TTGTTAATTTTATTATTATTTTAAAGACAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
* *
26122539 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGACAT
26122569 TTG
1 TTG
26122572 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGACAT
Found at i:26124164 original size:13 final size:13
Alignment explanation
Indices: 26124146--26124171 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26124136 GCAATTGGAG
26124146 TGCCGAAGTTCAA
1 TGCCGAAGTTCAA
26124159 TGCCGAAGTTCAA
1 TGCCGAAGTTCAA
26124172 AAGAACAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
TGCCGAAGTTCAA
Found at i:26126238 original size:11 final size:11
Alignment explanation
Indices: 26126222--26126268 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
26126212 CTTAATCACC
26126222 TTAATATTAAA
1 TTAATATTAAA
26126233 TTAATA-TAAA
1 TTAATATTAAA
* *
26126243 TAAATATTATA
1 TTAATATTAAA
26126254 TTAAT-TTAATA
1 TTAATATTAA-A
26126265 TTAA
1 TTAA
26126269 ATCTTATTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
10 12 0.40
11 18 0.60
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:26126262 original size:5 final size:6
Alignment explanation
Indices: 26126222--26126268 Score: 50
Period size: 5 Copynumber: 8.7 Consensus size: 6
26126212 CTTAATCACC
*
26126222 TTAATA TTAA-A TTAATA -TAA-A TAAATA TT-ATA TTAAT- TTAATA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA
26126265 TTAA
1 TTAA
26126269 ATCTTATTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
4 1 0.03
5 20 0.59
6 13 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
TTAATA
Found at i:26126387 original size:92 final size:92
Alignment explanation
Indices: 26126283--26126461 Score: 331
Period size: 92 Copynumber: 1.9 Consensus size: 92
26126273 TATTAAAATA
26126283 ATAGAATGTTTATCTTGTAGATAAACATTAAATTAAATTAAATATTAAGATAATCACTTTAATAT
1 ATAGAATGTTTATCTTGTAGATAAACATTAAATTAAATTAAATATTAAGATAATCACTTTAATAT
26126348 TAAATTAATAAAATACTATTAAATCTT
66 TAAATTAATAAAATACTATTAAATCTT
* *
26126375 ATAGAATGTTTATCTTGTAGATAAACATTAAATTAAATTTAATATTAATATAATCACTTTAATAT
1 ATAGAATGTTTATCTTGTAGATAAACATTAAATTAAATTAAATATTAAGATAATCACTTTAATAT
*
26126440 TAAATTAATAAAGTACTATTAA
66 TAAATTAATAAAATACTATTAA
26126462 GATAAGTATT
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
92 84 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (92 bp):
ATAGAATGTTTATCTTGTAGATAAACATTAAATTAAATTAAATATTAAGATAATCACTTTAATAT
TAAATTAATAAAATACTATTAAATCTT
Found at i:26126448 original size:20 final size:18
Alignment explanation
Indices: 26126401--26126507 Score: 62
Period size: 20 Copynumber: 5.8 Consensus size: 18
26126391 GTAGATAAAC
26126401 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
26126418 ATT-AATATAATCACTTTAAT
1 ATTAAAT-TAAT-A-TTTAAT
** *
26126438 ATTAAATTAATAAAGTACT
1 ATTAAATTAAT-ATTTAAT
26126457 ATTAAGA-TAAGTA-TT-AT
1 ATTAA-ATTAA-TATTTAAT
*
26126474 ATTAAATTTAATATTAAACT
1 ATTAAA-TTAATATTTAA-T
*
26126494 ATTAAAATAATATT
1 ATTAAATTAATATT
26126508 ACTTTTTGGA
Statistics
Matches: 70, Mismatches: 8, Indels: 22
0.70 0.08 0.22
Matches are distributed among these distances:
16 4 0.06
17 14 0.20
18 5 0.07
19 21 0.30
20 23 0.33
21 3 0.04
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:26126492 original size:92 final size:90
Alignment explanation
Indices: 26126251--26126461 Score: 262
Period size: 92 Copynumber: 2.3 Consensus size: 90
26126241 AATAAATATT
* * * **
26126251 ATATTAATTTAATATTAAAT-CTTATTAAAATAATAGAATGTTTATCTTGTAGATAAACATTAAA
1 ATATTAAATTAATA--AAATAC-TATT-AAATTATAGAATATTTAAATTGTAGATAAACATTAAA
26126315 TTAAATTAAATATTAAGATAATCACTTTA
62 TTAAATTAAATATTAAGATAATCACTTTA
* **
26126344 ATATTAAATTAATAAAATACTATTAAATCTTATAGAATGTTTATCTTGTAGATAAACATTAAATT
1 ATATTAAATTAATAAAATACTATTAAA--TTATAGAATATTTAAATTGTAGATAAACATTAAATT
* *
26126409 AAATTTAATATTAATATAATCACTTTA
64 AAATTAAATATTAAGATAATCACTTTA
*
26126436 ATATTAAATTAATAAAGTACTATTAA
1 ATATTAAATTAATAAAATACTATTAA
26126462 GATAAGTATT
Statistics
Matches: 110, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
90 3 0.03
91 8 0.07
92 86 0.78
93 13 0.12
ACGTcount: A:0.48, C:0.06, G:0.05, T:0.42
Consensus pattern (90 bp):
ATATTAAATTAATAAAATACTATTAAATTATAGAATATTTAAATTGTAGATAAACATTAAATTAA
ATTAAATATTAAGATAATCACTTTA
Found at i:26130633 original size:6 final size:6
Alignment explanation
Indices: 26130622--26130649 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
26130612 GCGAATAATT
26130622 AAAAAC AAAAAC AAAAAC AAAAAC AAAA
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAA
26130650 GTTGTAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:26132885 original size:128 final size:128
Alignment explanation
Indices: 26132657--26132913 Score: 478
Period size: 128 Copynumber: 2.0 Consensus size: 128
26132647 AGATGAATCG
26132657 TTTCCCATGTGCACAACTCCACCTTCAACTGAACTGTATGTGGAGAACCATTCTCTATTGGGACA
1 TTTCCCATGTGCACAACTCCACCTTCAACTGAACTGTATGTGGAGAACCATTCTCTATTGGGACA
26132722 CATGTGGAAAGAACATCCTGAATCTAGGATCCACTCAGACGTAAGCTTGGAGTTATCGCTCGT
66 CATGTGGAAAGAACATCCTGAATCTAGGATCCACTCAGACGTAAGCTTGGAGTTATCGCTCGT
* * * *
26132785 TTTCCCATGTGCACAACTCTACTTTCAACTGAATTGTATGTGGAGAACCATTCTTTATTGGGACA
1 TTTCCCATGTGCACAACTCCACCTTCAACTGAACTGTATGTGGAGAACCATTCTCTATTGGGACA
26132850 CATGTGGAAAGAACATCCTGAATCTAGGATCCACTCAGACGTAAGCTTGGAGTTATCGCTCGT
66 CATGTGGAAAGAACATCCTGAATCTAGGATCCACTCAGACGTAAGCTTGGAGTTATCGCTCGT
26132913 T
1 T
26132914 GACACTAACA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
128 125 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (128 bp):
TTTCCCATGTGCACAACTCCACCTTCAACTGAACTGTATGTGGAGAACCATTCTCTATTGGGACA
CATGTGGAAAGAACATCCTGAATCTAGGATCCACTCAGACGTAAGCTTGGAGTTATCGCTCGT
Found at i:26134071 original size:24 final size:24
Alignment explanation
Indices: 26134043--26134094 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
26134033 TTAGTAAGTC
*
26134043 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
26134067 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
26134091 AAAT
1 AAAT
26134095 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:26134828 original size:36 final size:36
Alignment explanation
Indices: 26134781--26134852 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
26134771 TAGCTAAATA
*
26134781 ATGCTCATTTTCTCAAGTTGGTACTTAAACTGTTTT
1 ATGCTAATTTTCTCAAGTTGGTACTTAAACTGTTTT
26134817 ATGCTAATTTTCTCAAGTTGGTACTTAAACTGTTTT
1 ATGCTAATTTTCTCAAGTTGGTACTTAAACTGTTTT
26134853 TTTATCACAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.24, C:0.15, G:0.14, T:0.47
Consensus pattern (36 bp):
ATGCTAATTTTCTCAAGTTGGTACTTAAACTGTTTT
Found at i:26136145 original size:15 final size:16
Alignment explanation
Indices: 26136125--26136159 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
26136115 ACAGAGATAT
26136125 AATAAA-ATATTAAAA
1 AATAAATATATTAAAA
*
26136140 AATAAATATTTTAAAA
1 AATAAATATATTAAAA
26136156 AATA
1 AATA
26136160 CATGTTAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AATAAATATATTAAAA
Found at i:26138157 original size:3 final size:3
Alignment explanation
Indices: 26138151--26138176 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26138141 GGCAATAGTG
26138151 CAC CAC CAC CAC CAC CAC CAC CAC CA
1 CAC CAC CAC CAC CAC CAC CAC CAC CA
26138177 AAGGCGGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.65, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:26145890 original size:28 final size:29
Alignment explanation
Indices: 26145859--26145918 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 29
26145849 ATATTAATTT
*
26145859 AAAAT-AAATAATATGTAAAATAACTTAA
1 AAAATAAAATAATATATAAAATAACTTAA
*
26145887 AAAATAAAAATAATATATAAAGTAACTTAA
1 AAAAT-AAAATAATATATAAAATAACTTAA
26145917 AA
1 AA
26145919 TATTTAGACT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 5 0.18
30 23 0.82
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.27
Consensus pattern (29 bp):
AAAATAAAATAATATATAAAATAACTTAA
Found at i:26145969 original size:21 final size:21
Alignment explanation
Indices: 26145940--26145979 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26145930 ATAAGTTAGG
26145940 TTAAGATAATAAATAAAAGGT
1 TTAAGATAATAAATAAAAGGT
* **
26145961 TTAATATAATCTATAAAAG
1 TTAAGATAATAAATAAAAG
26145980 AGAAAATTGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.10, T:0.33
Consensus pattern (21 bp):
TTAAGATAATAAATAAAAGGT
Found at i:26153653 original size:20 final size:20
Alignment explanation
Indices: 26153628--26153670 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
26153618 TAAAGATATT
*
26153628 TATTATGTTA-TATTATTATA
1 TATTATATTATTA-TATTATA
26153648 TATTATATTATTATATTATA
1 TATTATATTATTATATTATA
26153668 TAT
1 TAT
26153671 AAAGTAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
TATTATATTATTATATTATA
Found at i:26153670 original size:15 final size:15
Alignment explanation
Indices: 26153635--26153663 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26153625 ATTTATTATG
26153635 TTATATTATTATATA
1 TTATATTATTATATA
26153650 TTATATTATTATAT
1 TTATATTATTATAT
26153664 TATATATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTATATTATTATATA
Found at i:26154517 original size:36 final size:38
Alignment explanation
Indices: 26154449--26154540 Score: 93
Period size: 37 Copynumber: 2.5 Consensus size: 38
26154439 ATAAGTGTGG
26154449 AATTGAAATGAATAT-TGACTTGAAAATAG-AAAAGTGA
1 AATTGAAATGAAT-TGTGACTTGAAAATAGAAAAAGTGA
* * *
26154486 ATTTTGAATTGAATTGTGA-TTGAAAGT-GAAAAAGTGA
1 A-ATTGAAATGAATTGTGACTTGAAAATAGAAAAAGTGA
* *
26154523 AATTGAACTGAAATGTGA
1 AATTGAAATGAATTGTGA
26154541 AATTGGAGAC
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
36 15 0.33
37 18 0.39
38 13 0.28
ACGTcount: A:0.46, C:0.02, G:0.22, T:0.30
Consensus pattern (38 bp):
AATTGAAATGAATTGTGACTTGAAAATAGAAAAAGTGA
Found at i:26157929 original size:20 final size:21
Alignment explanation
Indices: 26157867--26157949 Score: 73
Period size: 20 Copynumber: 4.0 Consensus size: 21
26157857 GGTGCCTAGG
* * *
26157867 TGGC-ATTTTGTTAGCCTATG
1 TGGCTATTCTGTTAGCCTTTA
*
26157887 TGGCATATTCTGATTGGGCCTTTA
1 TGGC-TATTCTG-TT-AGCCTTTA
26157911 TGGC-ATTCTGTTAGCCTTTA
1 TGGCTATTCTGTTAGCCTTTA
*
26157931 T-GCTATTATGTTAGCCTTT
1 TGGCTATTCTGTTAGCCTTT
26157950 GTGGTGTACT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
19 2 0.04
20 26 0.50
21 2 0.04
22 11 0.21
23 2 0.04
24 9 0.17
ACGTcount: A:0.16, C:0.17, G:0.22, T:0.46
Consensus pattern (21 bp):
TGGCTATTCTGTTAGCCTTTA
Found at i:26157995 original size:20 final size:20
Alignment explanation
Indices: 26157919--26157997 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
26157909 TATGGCATTC
*
26157919 TGTTAGCCTTTATGCTATTA
1 TGTTAGCCTTTGTGCTATTA
*
26157939 TGTTAGCCTTTGTGGTGTACTCTATA
1 TGTTAGCC-TT-T-GTG--CTAT-TA
*
26157965 TATTA-CCTTTGTGCTATTA
1 TGTTAGCCTTTGTGCTATTA
26157984 TGTTAGCCTTTGTG
1 TGTTAGCCTTTGTG
26157998 GCAAATTCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 14
0.71 0.08 0.21
Matches are distributed among these distances:
19 6 0.13
20 19 0.40
21 2 0.04
22 4 0.09
23 3 0.06
24 2 0.04
25 5 0.11
26 6 0.13
ACGTcount: A:0.16, C:0.15, G:0.19, T:0.49
Consensus pattern (20 bp):
TGTTAGCCTTTGTGCTATTA
Found at i:26161533 original size:12 final size:12
Alignment explanation
Indices: 26161516--26161540 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26161506 AGTTCATGTG
26161516 TTATTTTATTAA
1 TTATTTTATTAA
26161528 TTATTTTATTAA
1 TTATTTTATTAA
26161540 T
1 T
26161541 AATGCATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTATTTTATTAA
Found at i:26166336 original size:37 final size:36
Alignment explanation
Indices: 26166256--26166337 Score: 85
Period size: 36 Copynumber: 2.2 Consensus size: 36
26166246 TAAAAAGATG
** **
26166256 AATTAAAAATAAAAAAATTGAAAACAATATATTTATT
1 AATT-AAAATAAAAAAATTGAAAACAATATAAATAAA
*
26166293 ATTTAAAATAAAAAAATTTG-AAACAATATGAAATAAA
1 AATTAAAATAAAAAAA-TTGAAAACAATAT-AAATAAA
26166330 AATTAAAA
1 AATTAAAA
26166338 ATGTGAATTG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
36 21 0.57
37 16 0.43
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (36 bp):
AATTAAAATAAAAAAATTGAAAACAATATAAATAAA
Found at i:26170201 original size:2 final size:2
Alignment explanation
Indices: 26170194--26170240 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
26170184 ATTAAATATG
*
26170194 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AT AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
26170236 AC AC A
1 AC AC A
26170241 TATATATAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.47, G:0.00, T:0.02
Consensus pattern (2 bp):
AC
Found at i:26180080 original size:3 final size:3
Alignment explanation
Indices: 26180066--26180106 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
26180056 CTGCCATGGC
*
26180066 AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
26180107 AATGATTTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26183356 original size:14 final size:14
Alignment explanation
Indices: 26183337--26183369 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
26183327 TCGCATATTG
26183337 TATAAATAAACAAC
1 TATAAATAAACAAC
*
26183351 TATAAATATACAAC
1 TATAAATAAACAAC
26183365 -ATAAA
1 TATAAA
26183370 AAAAATAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (14 bp):
TATAAATAAACAAC
Found at i:26188319 original size:16 final size:17
Alignment explanation
Indices: 26188293--26188325 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26188283 TTATTTAATT
*
26188293 TTTTAAAATTATTAAAA
1 TTTTAAAATTAGTAAAA
26188310 TTTT-AAATTAGTAAAA
1 TTTTAAAATTAGTAAAA
26188326 ATAAAGGTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
TTTTAAAATTAGTAAAA
Found at i:26188853 original size:47 final size:47
Alignment explanation
Indices: 26188784--26188875 Score: 157
Period size: 47 Copynumber: 2.0 Consensus size: 47
26188774 ATGTATGGTC
*
26188784 TAAATAATAAAATAGTCATTTATATATGGTCTAAGTAAGAAAAATGA
1 TAAATAATAAAATAGTCATTTATATATGGTCTAAATAAGAAAAATGA
* *
26188831 TAAATTATAAAATAGTCATTTATATATGGTCTAAATAATAAAAAT
1 TAAATAATAAAATAGTCATTTATATATGGTCTAAATAAGAAAAAT
26188876 AGTTACTTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.51, C:0.04, G:0.10, T:0.35
Consensus pattern (47 bp):
TAAATAATAAAATAGTCATTTATATATGGTCTAAATAAGAAAAATGA
Found at i:26191470 original size:49 final size:50
Alignment explanation
Indices: 26191406--26191634 Score: 183
Period size: 50 Copynumber: 4.5 Consensus size: 50
26191396 CAAAGCTATG
* * * * *
26191406 TCCCAGATATAGTCTTTCATTGGATGTT-TCTTGTA-CTGCCAATGCCATA
1 TCCCAGATATGGTCTTACATGGGA-GTTCTCATATAGCTGCCAATGCCATA
* *
26191455 TCCCAGATATGGTCTTACATGGGAGTTCTCATATAGGTGCCAATGCCATG
1 TCCCAGATATGGTCTTACATGGGAGTTCTCATATAGCTGCCAATGCCATA
* * ** * * * * *
26191505 TCCCAGACATGGTCTTACAGGGGACCTCTCATCTTGGTGCCAACGCCATG
1 TCCCAGATATGGTCTTACATGGGAGTTCTCATATAGCTGCCAATGCCATA
* ** * *
26191555 TCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGCCATG
1 TCCCAGATATGGTCTTACATGGGAGTTCTCAT-A--T--A-GCTGCCAATGCCATA
*
26191611 TCCCAGACATGGTCTTACATGGGA
1 TCCCAGATATGGTCTTACATGGGA
26191635 TCTCTTTACC
Statistics
Matches: 153, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
48 3 0.02
49 26 0.17
50 86 0.56
53 1 0.01
56 37 0.24
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (50 bp):
TCCCAGATATGGTCTTACATGGGAGTTCTCATATAGCTGCCAATGCCATA
Found at i:26191509 original size:50 final size:50
Alignment explanation
Indices: 26191442--26191639 Score: 252
Period size: 50 Copynumber: 3.8 Consensus size: 50
26191432 TTTCTTGTAC
* * **
26191442 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* * *
26191492 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* *
26191542 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T--A-GG
*
26191598 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26191640 TTACCCAAAT
Statistics
Matches: 128, Mismatches: 14, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
50 86 0.67
53 1 0.01
56 41 0.32
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
Found at i:26194063 original size:42 final size:42
Alignment explanation
Indices: 26193955--26194066 Score: 170
Period size: 42 Copynumber: 2.7 Consensus size: 42
26193945 CTATTTTGTC
* * ** *
26193955 CACACGGGCGTGTGTCTCAGCCGTATGTGACACATGACCTAG
1 CACATGGGCGTGTGTTTTGGCCGTGTGTGACACATGACCTAG
*
26193997 CACATGGGCGTGTGTTTTGGCCGTGTGTGACACATGACTTAG
1 CACATGGGCGTGTGTTTTGGCCGTGTGTGACACATGACCTAG
26194039 CACATGGGCGTGTGTTTTGGCCGTGTGT
1 CACATGGGCGTGTGTTTTGGCCGTGTGT
26194067 CCCTTGCATC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.16, C:0.22, G:0.33, T:0.29
Consensus pattern (42 bp):
CACATGGGCGTGTGTTTTGGCCGTGTGTGACACATGACCTAG
Found at i:26210962 original size:16 final size:17
Alignment explanation
Indices: 26210941--26210973 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26210931 TCAATATCAA
*
26210941 AATATTA-AAGTTTATT
1 AATATTAGAACTTTATT
26210957 AATATTAGAACTTTATT
1 AATATTAGAACTTTATT
26210974 TTATTCTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (17 bp):
AATATTAGAACTTTATT
Found at i:26214000 original size:24 final size:25
Alignment explanation
Indices: 26213950--26214000 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
26213940 ATTTTTAAGA
*
26213950 AAATTAATCTTAATCAAGTAAAATT
1 AAATTAATCTAAATCAAGTAAAATT
* *
26213975 AAATTAATC-AAATTAATTAAAATT
1 AAATTAATCTAAATCAAGTAAAATT
26213999 AA
1 AA
26214001 TATGATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (25 bp):
AAATTAATCTAAATCAAGTAAAATT
Found at i:26214479 original size:31 final size:30
Alignment explanation
Indices: 26214405--26214486 Score: 78
Period size: 31 Copynumber: 2.7 Consensus size: 30
26214395 TAATAGATGT
*
26214405 AATA-TTAATATTAATTTAATATTTATCTG
1 AATATTTAATATTAATTTAATATTTAACTG
** *
26214434 AATATTATTTTATTAATTTAAT-TTTAAAGTG
1 AATATT-TAATATTAATTTAATATTT-AACTG
26214465 AATATCTTAATATTAAATTTAA
1 AATAT-TTAATATT-AATTTAA
26214487 CTTAATGTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
29 4 0.10
30 4 0.10
31 26 0.62
32 8 0.19
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (30 bp):
AATATTTAATATTAATTTAATATTTAACTG
Found at i:26215743 original size:24 final size:24
Alignment explanation
Indices: 26215711--26215768 Score: 116
Period size: 24 Copynumber: 2.4 Consensus size: 24
26215701 TAATAATTTT
26215711 TTATTTTTTATTTAAAAATAACCA
1 TTATTTTTTATTTAAAAATAACCA
26215735 TTATTTTTTATTTAAAAATAACCA
1 TTATTTTTTATTTAAAAATAACCA
26215759 TTATTTTTTA
1 TTATTTTTTA
26215769 AAAGAATTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (24 bp):
TTATTTTTTATTTAAAAATAACCA
Found at i:26228981 original size:50 final size:50
Alignment explanation
Indices: 26228918--26229255 Score: 374
Period size: 51 Copynumber: 6.7 Consensus size: 50
26228908 TCATTCGATA
*
26228918 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
*
26228968 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
* *
26229018 CACGTAGTAGCCTTCACATAGCACTACACACGTGACCAAAGCTTTT-CGGTA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTTACGGTT
* * * *** *
26229069 CACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA-CGGTT
* * * *
26229120 CACATAGTAGCCTTCACATAGTACTACACACATGACCAAAGCTTCT-CGGTA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAG-TTTTACGGTT
* * * * * *** *
26229171 CACATTGTAGCATTCACTTAGTACTACACATGTGACCATCATTTATCGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTA-CGGTT
* *
26229222 CACGTAGTAGCCTTCACACAATACTACACACGTG
1 CACGTAGTAGCCTTCACATAGTACTACACACGTG
26229256 TTCATCGATA
Statistics
Matches: 241, Mismatches: 39, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
49 5 0.02
50 87 0.36
51 142 0.59
52 5 0.02
53 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
Found at i:26229099 original size:26 final size:26
Alignment explanation
Indices: 26229067--26229149 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 26
26229057 AGCTTTTCGG
26229067 TACACATAGTAGCCTTCACTTAGTAC
1 TACACATAGTAGCCTTCACTTAGTAC
* *
26229093 TACACAT-GT-GACCATCATTTA-T-C
1 TACACATAGTAG-CCTTCACTTAGTAC
* *
26229116 GATTCACATAGTAGCCTTCACATAGTAC
1 --TACACATAGTAGCCTTCACTTAGTAC
26229144 TACACA
1 TACACA
26229150 CATGACCAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 14
0.67 0.11 0.22
Matches are distributed among these distances:
23 1 0.02
24 2 0.05
25 16 0.37
26 21 0.49
27 2 0.05
28 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.30
Consensus pattern (26 bp):
TACACATAGTAGCCTTCACTTAGTAC
Found at i:26229146 original size:102 final size:102
Alignment explanation
Indices: 26228912--26229255 Score: 487
Period size: 102 Copynumber: 3.4 Consensus size: 102
26228902 CTTTTATCAT
* * * *
26228912 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTTTACGGTTCACGTAG
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTT-CGGTACACATAG
* * * ***
26228975 TAGCCTTCACATAGTACTACACACGTGATCAAGTTTTA
65 TAGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* *
26229013 -CGGTTCACGTAGTAGCCTTCACATAGCACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
26229077 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* * * *
26229114 TCGATTCACATAGTAGCCTTCACATAGTACTACACACATGACCAAAGCTTCTCGGTACACATTGT
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
*
26229179 AGCATTCACTTAGTACTACACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* *
26229216 TCGATTCACGTAGTAGCCTTCACACAATACTACACACGTG
1 TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTG
26229256 TTCATCGATA
Statistics
Matches: 217, Mismatches: 23, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
100 38 0.18
101 45 0.21
102 134 0.62
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (102 bp):
TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTTCGGTACACATAGT
AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
Found at i:26230484 original size:11 final size:12
Alignment explanation
Indices: 26230456--26230488 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
26230446 GCCCAAACAT
26230456 CGAAATTTTCGAA
1 CGAAATTTTC-AA
26230469 CGAAATTTTC-A
1 CGAAATTTTCAA
26230480 CGAAATTTT
1 CGAAATTTT
26230489 TCTGTGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.50
13 10 0.50
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (12 bp):
CGAAATTTTCAA
Found at i:26231565 original size:16 final size:17
Alignment explanation
Indices: 26231540--26231574 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
26231530 ATTTCTCACA
26231540 TCATCCCTCATCC-CTC
1 TCATCCCTCATCCTCTC
*
26231556 TCATCTCTCATCCTCTC
1 TCATCCCTCATCCTCTC
26231573 TC
1 TC
26231575 TCAACTCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.11, C:0.51, G:0.00, T:0.37
Consensus pattern (17 bp):
TCATCCCTCATCCTCTC
Found at i:26232450 original size:411 final size:411
Alignment explanation
Indices: 26231688--26232509 Score: 1644
Period size: 411 Copynumber: 2.0 Consensus size: 411
26231678 AAAGGAGCAA
26231688 CCAAAGAAGCGAAGGAGCCTCGTCAGCCAGAGTCTTGGGTGGCAGCCACTCTGAATTGGGTTTAA
1 CCAAAGAAGCGAAGGAGCCTCGTCAGCCAGAGTCTTGGGTGGCAGCCACTCTGAATTGGGTTTAA
26231753 TCTATCTTTTCTTTAATTTAATTTAAAGATGTTTGCTATGAGTTCTTTGTTCTTGGTTACAACAA
66 TCTATCTTTTCTTTAATTTAATTTAAAGATGTTTGCTATGAGTTCTTTGTTCTTGGTTACAACAA
26231818 TGATAGCTTAATTTTATTTAAGCTAGGATGATTATTTTGATTAAATAATATTTATTTGATTCATG
131 TGATAGCTTAATTTTATTTAAGCTAGGATGATTATTTTGATTAAATAATATTTATTTGATTCATG
26231883 CTTATAATGTTTGTGTCTCAATCGATCATGTTTTCAATTAAAATCAAGTATGTATTTTGTTCATA
196 CTTATAATGTTTGTGTCTCAATCGATCATGTTTTCAATTAAAATCAAGTATGTATTTTGTTCATA
26231948 CGTGATTGAAATGCACCTGAATTAGCTGAGCGATCCTAACCAGACAACGGCTAATGGATGCATAA
261 CGTGATTGAAATGCACCTGAATTAGCTGAGCGATCCTAACCAGACAACGGCTAATGGATGCATAA
26232013 TGAAATGTGCATGCTTAATTTAGATTCTAACGCGATTAAATTGTAGGTTGCATAACAACCCTAAC
326 TGAAATGTGCATGCTTAATTTAGATTCTAACGCGATTAAATTGTAGGTTGCATAACAACCCTAAC
26232078 CAAGCTCTGTTATCTGCATAG
391 CAAGCTCTGTTATCTGCATAG
26232099 CCAAAGAAGCGAAGGAGCCTCGTCAGCCAGAGTCTTGGGTGGCAGCCACTCTGAATTGGGTTTAA
1 CCAAAGAAGCGAAGGAGCCTCGTCAGCCAGAGTCTTGGGTGGCAGCCACTCTGAATTGGGTTTAA
26232164 TCTATCTTTTCTTTAATTTAATTTAAAGATGTTTGCTATGAGTTCTTTGTTCTTGGTTACAACAA
66 TCTATCTTTTCTTTAATTTAATTTAAAGATGTTTGCTATGAGTTCTTTGTTCTTGGTTACAACAA
26232229 TGATAGCTTAATTTTATTTAAGCTAGGATGATTATTTTGATTAAATAATATTTATTTGATTCATG
131 TGATAGCTTAATTTTATTTAAGCTAGGATGATTATTTTGATTAAATAATATTTATTTGATTCATG
26232294 CTTATAATGTTTGTGTCTCAATCGATCATGTTTTCAATTAAAATCAAGTATGTATTTTGTTCATA
196 CTTATAATGTTTGTGTCTCAATCGATCATGTTTTCAATTAAAATCAAGTATGTATTTTGTTCATA
26232359 CGTGATTGAAATGCACCTGAATTAGCTGAGCGATCCTAACCAGACAACGGCTAATGGATGCATAA
261 CGTGATTGAAATGCACCTGAATTAGCTGAGCGATCCTAACCAGACAACGGCTAATGGATGCATAA
26232424 TGAAATGTGCATGCTTAATTTAGATTCTAACGCGATTAAATTGTAGGTTGCATAACAACCCTAAC
326 TGAAATGTGCATGCTTAATTTAGATTCTAACGCGATTAAATTGTAGGTTGCATAACAACCCTAAC
26232489 CAAGCTCTGTTATCTGCATAG
391 CAAGCTCTGTTATCTGCATAG
26232510 TTTTTAGATT
Statistics
Matches: 411, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
411 411 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (411 bp):
CCAAAGAAGCGAAGGAGCCTCGTCAGCCAGAGTCTTGGGTGGCAGCCACTCTGAATTGGGTTTAA
TCTATCTTTTCTTTAATTTAATTTAAAGATGTTTGCTATGAGTTCTTTGTTCTTGGTTACAACAA
TGATAGCTTAATTTTATTTAAGCTAGGATGATTATTTTGATTAAATAATATTTATTTGATTCATG
CTTATAATGTTTGTGTCTCAATCGATCATGTTTTCAATTAAAATCAAGTATGTATTTTGTTCATA
CGTGATTGAAATGCACCTGAATTAGCTGAGCGATCCTAACCAGACAACGGCTAATGGATGCATAA
TGAAATGTGCATGCTTAATTTAGATTCTAACGCGATTAAATTGTAGGTTGCATAACAACCCTAAC
CAAGCTCTGTTATCTGCATAG
Found at i:26241482 original size:22 final size:22
Alignment explanation
Indices: 26241446--26241489 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26241436 AACTCATAAC
26241446 ACATTTAGAGAATTTTGTGTTT
1 ACATTTAGAGAATTTTGTGTTT
* * *
26241468 ACATTTTGAGGATTTTTTGTTT
1 ACATTTAGAGAATTTTGTGTTT
26241490 TCGGGTTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.05, G:0.18, T:0.55
Consensus pattern (22 bp):
ACATTTAGAGAATTTTGTGTTT
Found at i:26244482 original size:28 final size:29
Alignment explanation
Indices: 26244428--26244484 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
26244418 GCGGCATAAG
*
26244428 TATATTATTATAAAATTTTAAAGTTAAAA
1 TATATTATTATAAAATTATAAAGTTAAAA
*
26244457 TATA-TATTATAATATTATAATA-TTAAAA
1 TATATTATTATAAAATTATAA-AGTTAAAA
26244485 CTTAAATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 20 0.80
29 5 0.20
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (29 bp):
TATATTATTATAAAATTATAAAGTTAAAA
Found at i:26244589 original size:15 final size:15
Alignment explanation
Indices: 26244569--26244609 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
26244559 AAGCAAAAAC
**
26244569 GAAACAAAAAGGAAA
1 GAAACAAAAAACAAA
26244584 GAAACAAAAAACAAA
1 GAAACAAAAAACAAA
*
26244599 GAAAGAAAAAA
1 GAAACAAAAAA
26244610 GGAGACGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.78, C:0.07, G:0.15, T:0.00
Consensus pattern (15 bp):
GAAACAAAAAACAAA
Found at i:26245289 original size:24 final size:24
Alignment explanation
Indices: 26245257--26245313 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 24
26245247 GTGTTTTACA
26245257 ATTGAAATTTATTG-ATTTAGTATGTG
1 ATTG-AATTTATTGAATTTA-TAT-TG
26245283 A-TGAATTTATTGAATTTATATTG
1 ATTGAATTTATTGAATTTATATTG
26245306 ATTGAATT
1 ATTGAATT
26245314 GGTATTTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
23 3 0.10
24 18 0.62
25 7 0.24
26 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATTGAATTTATATTG
Found at i:26245533 original size:41 final size:39
Alignment explanation
Indices: 26245469--26245608 Score: 124
Period size: 40 Copynumber: 3.6 Consensus size: 39
26245459 CGACTTCGAG
*
26245469 TCGATGAGACACTGGGTGTCAATTTACTACTTCAGATTAAT
1 TCGATGAGACACTGGGTGCCAATTTACTACTTC-GATT-AT
* * * *
26245510 TCGATGAGGCACTCGGTGCCAA-TT-C-ACTTCGGTTTAG
1 TCGATGAGACACTGGGTGCCAATTTACTACTTC-GATTAT
* * * * *
26245547 CCGATGAGACACAGAGTGTCAATTTATTACTTCGAATTAT
1 TCGATGAGACACTGGGTGCCAATTTACTACTTCG-ATTAT
*
26245587 TCGATGAGGCACTGGGTGCCAA
1 TCGATGAGACACTGGGTGCCAA
26245609 ACTGGTGTGT
Statistics
Matches: 75, Mismatches: 20, Indels: 9
0.72 0.19 0.09
Matches are distributed among these distances:
37 17 0.23
38 10 0.13
39 2 0.03
40 27 0.36
41 19 0.25
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (39 bp):
TCGATGAGACACTGGGTGCCAATTTACTACTTCGATTAT
Found at i:26246696 original size:41 final size:41
Alignment explanation
Indices: 26246631--26246727 Score: 167
Period size: 41 Copynumber: 2.4 Consensus size: 41
26246621 TCCGAATTCT
* *
26246631 TGAAAAGGTTGAAAAGGAAGTTACCCGAAAGGGATAACACA
1 TGAAAAGGTTGAAAAGGAAATTACCCGAAAAGGATAACACA
*
26246672 TGGAAAGGTTGAAAAGGAAATTACCCGAAAAGGATAACACA
1 TGAAAAGGTTGAAAAGGAAATTACCCGAAAAGGATAACACA
26246713 TGAAAAGGTTGAAAA
1 TGAAAAGGTTGAAAA
26246728 AGATATATCT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.48, C:0.10, G:0.26, T:0.15
Consensus pattern (41 bp):
TGAAAAGGTTGAAAAGGAAATTACCCGAAAAGGATAACACA
Found at i:26250416 original size:12 final size:12
Alignment explanation
Indices: 26250399--26250423 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26250389 AAGACAAGAC
26250399 ACAGAGAGAGAG
1 ACAGAGAGAGAG
26250411 ACAGAGAGAGAG
1 ACAGAGAGAGAG
26250423 A
1 A
26250424 TGTCGGGAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.40, T:0.00
Consensus pattern (12 bp):
ACAGAGAGAGAG
Found at i:26265597 original size:36 final size:33
Alignment explanation
Indices: 26265521--26265602 Score: 101
Period size: 36 Copynumber: 2.4 Consensus size: 33
26265511 AGTTTGTTCC
* * *
26265521 AAGTTTGTACCAATGAATCTAATTTAAAATACA
1 AAGTTTGTTCCAATGAATCCAATTAAAAATACA
*
26265554 AAATTTGTTCCAATGAATCGCAATTAAATAAATACA
1 AAGTTTGTTCCAATGAATC-CAATT-AA-AAATACA
26265590 AAGTTTGTTCCAA
1 AAGTTTGTTCCAA
26265603 GCTTGTTCCA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
33 17 0.41
34 4 0.10
35 1 0.02
36 19 0.46
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (33 bp):
AAGTTTGTTCCAATGAATCCAATTAAAAATACA
Found at i:26267587 original size:11 final size:11
Alignment explanation
Indices: 26267571--26267614 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
26267561 AACACCGAAC
26267571 TTTTTGGGTAA
1 TTTTTGGGTAA
26267582 TTTTTGGGT-A
1 TTTTTGGGTAA
* *
26267592 -GTTCGGGTAA
1 TTTTTGGGTAA
26267602 TTTTTGGGTAA
1 TTTTTGGGTAA
26267613 TT
1 TT
26267615 CGGTTAATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
9 6 0.22
10 2 0.07
11 19 0.70
ACGTcount: A:0.16, C:0.02, G:0.30, T:0.52
Consensus pattern (11 bp):
TTTTTGGGTAA
Found at i:26267601 original size:20 final size:20
Alignment explanation
Indices: 26267576--26267623 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
26267566 CGAACTTTTT
*
26267576 GGGTAATTTTTGGGTAGTTC
1 GGGTAATTTTTGGGTAATTC
26267596 GGGTAATTTTTGGGTAATTC
1 GGGTAATTTTTGGGTAATTC
*
26267616 GGTTAATT
1 GGGTAATT
26267624 CGGTTCACTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (20 bp):
GGGTAATTTTTGGGTAATTC
Found at i:26268638 original size:21 final size:20
Alignment explanation
Indices: 26268614--26268663 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 20
26268604 AAATAACTTT
26268614 AAAATA-AATTAAAAAAACATA
1 AAAATACAA-TAAAAAAAC-TA
26268635 AAAATTACAATAAAAAAACTA
1 AAAA-TACAATAAAAAAACTA
26268656 AACAATAC
1 AA-AATAC
26268664 TAACAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
21 11 0.42
22 13 0.50
23 2 0.08
ACGTcount: A:0.72, C:0.10, G:0.00, T:0.18
Consensus pattern (20 bp):
AAAATACAATAAAAAAACTA
Found at i:26268643 original size:104 final size:108
Alignment explanation
Indices: 26268439--26268640 Score: 313
Period size: 110 Copynumber: 1.9 Consensus size: 108
26268429 ATTACATTCA
*
26268439 TAACAAATCACAATAAATATTAAACTAAACAAATAATTAACCTAACCATAAATTACTAACAAAAT
1 TAACAAATCACAATAAATATTAAAATAAACAAATAATTAA-CTAA-CATAAATTACTAACAAAAT
26268504 AACTTTAAAATAAATAAAAAAACATAAAAATTTACATTCATAACC
64 AACTTTAAAATAAATAAAAAAACATAAAAATTTACATTCATAACC
* * *
26268549 TAACAAATCACAATAAATATTAAAATAGACAAATAATTTA-T-A-AT-AGTTACTAACAAAATAA
1 TAACAAATCACAATAAATATTAAAATAAACAAATAATTAACTAACATAAATTACTAACAAAATAA
26268610 CTTTAAAATAAATTAAAAAAACATAAAAATT
66 CTTTAAAATAAA-TAAAAAAACATAAAAATT
26268641 ACAATAAAAA
Statistics
Matches: 87, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
104 28 0.32
105 20 0.23
107 1 0.01
108 1 0.01
110 37 0.43
ACGTcount: A:0.60, C:0.12, G:0.01, T:0.27
Consensus pattern (108 bp):
TAACAAATCACAATAAATATTAAAATAAACAAATAATTAACTAACATAAATTACTAACAAAATAA
CTTTAAAATAAATAAAAAAACATAAAAATTTACATTCATAACC
Found at i:26268671 original size:22 final size:22
Alignment explanation
Indices: 26268624--26268671 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
26268614 AAAATAAATT
*
26268624 AAAAAAACATAAAAATTACAAT
1 AAAAAAACATAAAAATTACAAC
26268646 AAAAAAAC-TAAACAA-TACTAAC
1 AAAAAAACATAAA-AATTAC-AAC
26268668 AAAA
1 AAAA
26268672 TAATTTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15
Consensus pattern (22 bp):
AAAAAAACATAAAAATTACAAC
Found at i:26274519 original size:34 final size:35
Alignment explanation
Indices: 26274475--26274541 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
26274465 CAGTAAAATA
26274475 TTTTCCGTAAAATGATTT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
26274509 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
26274542 CTTGTGTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:26276363 original size:22 final size:22
Alignment explanation
Indices: 26276338--26276384 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
26276328 TTTTTATCAC
*
26276338 AAAACTTATATATTTTATAAAA
1 AAAACTTAAATATTTTATAAAA
* * *
26276360 AAAATTTAAATTTTTTTTAAAA
1 AAAACTTAAATATTTTATAAAA
26276382 AAA
1 AAA
26276385 TCTTTGATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAACTTAAATATTTTATAAAA
Found at i:26279526 original size:2 final size:2
Alignment explanation
Indices: 26279519--26279545 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26279509 AGAAAGTGTT
26279519 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
26279546 TCAAAACATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26279906 original size:5 final size:5
Alignment explanation
Indices: 26279896--26279920 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
26279886 CATTTTGCTT
26279896 CCATC CCATC CCATC CCATC CCATC
1 CCATC CCATC CCATC CCATC CCATC
26279921 TTTAAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.60, G:0.00, T:0.20
Consensus pattern (5 bp):
CCATC
Found at i:26280849 original size:11 final size:11
Alignment explanation
Indices: 26280819--26280904 Score: 75
Period size: 11 Copynumber: 7.7 Consensus size: 11
26280809 AAACTAATCC
26280819 TCTCTCAATTAT
1 TCTCTCAATT-T
*
26280831 TTTCTCAATTT
1 TCTCTCAATTT
*
26280842 TCTCTCAAATT
1 TCTCTCAATTT
*
26280853 TCTCTCAAATT
1 TCTCTCAATTT
* *
26280864 GCTCTAAATTT
1 TCTCTCAATTT
*
26280875 GCTCTCAATTT
1 TCTCTCAATTT
* *
26280886 CCT-TCCAAATT
1 TCTCT-CAATTT
26280897 TCTCTCAA
1 TCTCTCAA
26280905 ATCCATATTT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
10 1 0.02
11 51 0.82
12 10 0.16
ACGTcount: A:0.24, C:0.27, G:0.02, T:0.47
Consensus pattern (11 bp):
TCTCTCAATTT
Found at i:26283356 original size:12 final size:12
Alignment explanation
Indices: 26283328--26283357 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26283318 CCCTAACAAA
*
26283328 AACCCTAACCCT
1 AACCTTAACCCT
26283340 AACCTTAACCCT
1 AACCTTAACCCT
26283352 AACCTT
1 AACCTT
26283358 TAACTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.43, G:0.00, T:0.23
Consensus pattern (12 bp):
AACCTTAACCCT
Found at i:26283457 original size:119 final size:120
Alignment explanation
Indices: 26283240--26283467 Score: 361
Period size: 119 Copynumber: 1.9 Consensus size: 120
26283230 TTGAGGTATT
26283240 ACTTAAAAAACCTAAACTAATTTATTAAAAATTTATAAATTTATAAATTATAATTATAATTATAA
1 ACTTAAAAAACCTAAACTAATTTATTAAAAATTTATAAATTTATAAATTATAATTATAATTATAA
*
26283305 TTTAATTGACAAACCCTAACAAAAACCCTAACCCTAACCTTAACCCTAACCTTTA
66 TTTAATTGACAAACCCTAACAAAAACCCTAACCCTAACCCTAACCCTAACCTTTA
* * * * *
26283360 ACTTTAAAACCCTAAACTAATTTATTAAAAA-TTATAAATTTATAATTTATAATTA-AATTTTGA
1 ACTTAAAAAACCTAAACTAATTTATTAAAAATTTATAAATTTATAAATTATAATTATAATTATAA
* *
26283423 TATTAATTGACAAACCTTAACAGAAACCCTAACCCTAACCCTAAC
66 T-TTAATTGACAAACCCTAACAAAAACCCTAACCCTAACCCTAAC
26283468 ACATTAACTT
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
118 7 0.07
119 63 0.64
120 29 0.29
ACGTcount: A:0.46, C:0.18, G:0.02, T:0.34
Consensus pattern (120 bp):
ACTTAAAAAACCTAAACTAATTTATTAAAAATTTATAAATTTATAAATTATAATTATAATTATAA
TTTAATTGACAAACCCTAACAAAAACCCTAACCCTAACCCTAACCCTAACCTTTA
Found at i:26283555 original size:21 final size:21
Alignment explanation
Indices: 26283459--26283576 Score: 130
Period size: 22 Copynumber: 5.5 Consensus size: 21
26283449 CCCTAACCCT
*
26283459 AACCCTAACACATTAACTTAAA
1 AACCCTAACCCA-TAACTTAAA
**
26283481 AACCCTAAACCTTTAACTTAAA
1 AACCCT-AACCCATAACTTAAA
** *
26283503 AACCCTAACAAACAACTTAAA
1 AACCCTAACCCATAACTTAAA
26283524 AACCCTAAACCCATAACTTAAA
1 AACCCT-AACCCATAACTTAAA
*
26283546 AACCCTAACCCTTAACTT-AA
1 AACCCTAACCCATAACTTAAA
*
26283566 AATCCTAACCC
1 AACCCTAACCC
26283577 TAAACCTAAC
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
20 12 0.15
21 28 0.34
22 39 0.48
23 3 0.04
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.21
Consensus pattern (21 bp):
AACCCTAACCCATAACTTAAA
Found at i:26283563 original size:43 final size:43
Alignment explanation
Indices: 26283459--26283567 Score: 155
Period size: 43 Copynumber: 2.5 Consensus size: 43
26283449 CCCTAACCCT
**
26283459 AACCCTAACACATTAACTTAAAAACCCTAAACCTTTAACTTAAA
1 AACCCTAAC-CATTAACTTAAAAACCCTAAACCCATAACTTAAA
* **
26283503 AACCCTAACAAACAACTTAAAAACCCTAAACCCATAACTTAAA
1 AACCCTAACCATTAACTTAAAAACCCTAAACCCATAACTTAAA
*
26283546 AACCCTAACCCTTAACTTAAAA
1 AACCCTAACCATTAACTTAAAA
26283568 TCCTAACCCT
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
43 47 0.84
44 9 0.16
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (43 bp):
AACCCTAACCATTAACTTAAAAACCCTAAACCCATAACTTAAA
Found at i:26283713 original size:59 final size:59
Alignment explanation
Indices: 26283641--26283765 Score: 232
Period size: 59 Copynumber: 2.1 Consensus size: 59
26283631 TTAACAATTA
*
26283641 ATAATTTTACTAACAAACTATAGCGTTTTTACAAAATGTTTTGATTGGTACAAAAAAAT
1 ATAATTTTACTAACAAACTATAGCGTTTTTACAAAATATTTTGATTGGTACAAAAAAAT
*
26283700 ATAATTTTACTAACAAACTATTGCGTTTTTACAAAATATTTTGATTGGTACAAAAAAAT
1 ATAATTTTACTAACAAACTATAGCGTTTTTACAAAATATTTTGATTGGTACAAAAAAAT
26283759 ATAATTT
1 ATAATTT
26283766 GTTTACAATG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 64 1.00
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.39
Consensus pattern (59 bp):
ATAATTTTACTAACAAACTATAGCGTTTTTACAAAATATTTTGATTGGTACAAAAAAAT
Found at i:26286967 original size:125 final size:124
Alignment explanation
Indices: 26286773--26287056 Score: 442
Period size: 125 Copynumber: 2.3 Consensus size: 124
26286763 CGAGGGTGTG
* * * *
26286773 ATTTCATAAATTTTTTTGATAAAGCATCCTGCTTGAAGCATTTTTTATACTATTCGCTCAGAAAT
1 ATTTCAGAAA-TTCTTTGATAAAGCATCCTGCTTGAAGCATTTTTTATACTATTCGCTCAAAAAC
* *
26286838 GTCAACTCGAAATTATTTTTTCAGGACCTACTGTAGCAAAAGCACGTCCATGTGGGCGCA
65 GTCAACTCGAAATTATTTTTTCAGGACCAACTGTAGCAAAAGCACGTCCACGTGGGCGCA
* *
26286898 ATTTCAGAAATTCTTCTAATAAAGCATCCTGCTTGAAGCGTTTTTTATACTATTCGCTCAAAAAC
1 ATTTCAGAAATTCTT-TGATAAAGCATCCTGCTTGAAGCATTTTTTATACTATTCGCTCAAAAAC
* **
26286963 GTCAACTTGAAATTATTTTTTCAGGACCAACTGTAGCAAAAGTGCGTCCACGTGGGCGCA
65 GTCAACTCGAAATTATTTTTTCAGGACCAACTGTAGCAAAAGCACGTCCACGTGGGCGCA
26287023 ATTTCAGAAATTCTTTCGATAAAGCATCCTGCTT
1 ATTTCAGAAATTCTTT-GATAAAGCATCCTGCTT
26287057 TGATTTTATC
Statistics
Matches: 145, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
124 5 0.03
125 140 0.97
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (124 bp):
ATTTCAGAAATTCTTTGATAAAGCATCCTGCTTGAAGCATTTTTTATACTATTCGCTCAAAAACG
TCAACTCGAAATTATTTTTTCAGGACCAACTGTAGCAAAAGCACGTCCACGTGGGCGCA
Found at i:26287214 original size:22 final size:22
Alignment explanation
Indices: 26287174--26287215 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26287164 TTTCCTCTAA
* **
26287174 AACCTTAAAAACCTTAAACCCT
1 AACCCTAAAAACCAAAAACCCT
26287196 AACCCTAAAAACCAAAAACC
1 AACCCTAAAAACCAAAAACC
26287216 TAAATATGGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.14
Consensus pattern (22 bp):
AACCCTAAAAACCAAAAACCCT
Found at i:26297905 original size:20 final size:20
Alignment explanation
Indices: 26297859--26297906 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
26297849 GATTTTTTCC
* *
26297859 ATATTTTTCAGCATAATATG
1 ATATTTTTCACCAGAATATG
*
26297879 ATCTTTTTC-CCAGAATATCG
1 ATATTTTTCACCAGAATAT-G
26297899 ATATTTTT
1 ATATTTTT
26297907 AAGCAGATCT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.29, C:0.15, G:0.08, T:0.48
Consensus pattern (20 bp):
ATATTTTTCACCAGAATATG
Found at i:26300020 original size:13 final size:13
Alignment explanation
Indices: 26299997--26300042 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
26299987 AGGTTAACAA
26299997 AATATAAATAGAAG
1 AATA-AAATAGAAG
26300011 AATAAAATAGAAG
1 AATAAAATAGAAG
*
26300024 AATAAAATAAAAG
1 AATAAAATAGAAG
*
26300037 AGTAAA
1 AATAAA
26300043 GAGAATGCTC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
13 26 0.87
14 4 0.13
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (13 bp):
AATAAAATAGAAG
Found at i:26300379 original size:21 final size:21
Alignment explanation
Indices: 26300354--26300396 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
26300344 GTTCAGGCTA
* *
26300354 TGGCTCAACATAGGGTGTGTG
1 TGGCTCAACACAAGGTGTGTG
26300375 TGGCTCAACACAAGGTGTGTG
1 TGGCTCAACACAAGGTGTGTG
26300396 T
1 T
26300397 TGCAACATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.21, C:0.16, G:0.35, T:0.28
Consensus pattern (21 bp):
TGGCTCAACACAAGGTGTGTG
Found at i:26303513 original size:11 final size:11
Alignment explanation
Indices: 26303470--26303506 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
26303460 TCCTTCATTC
*
26303470 ATCATCACTCA
1 ATCATCCCTCA
26303481 ATCATCCCTCA
1 ATCATCCCTCA
*
26303492 AGCATCCCTCA
1 ATCATCCCTCA
26303503 ATCA
1 ATCA
26303507 GTCCTCATTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.32, C:0.41, G:0.03, T:0.24
Consensus pattern (11 bp):
ATCATCCCTCA
Found at i:26305131 original size:36 final size:36
Alignment explanation
Indices: 26305084--26305156 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
26305074 GAGGAGTGCT
*
26305084 TTAGTTAGAATAGATCTGAAAGGCTACTGAATTGAA
1 TTAGTTAGAATAGATCTAAAAGGCTACTGAATTGAA
* *
26305120 TTAGTTAGAATAGATCTAAAAGGCTATTGAGTTGAA
1 TTAGTTAGAATAGATCTAAAAGGCTACTGAATTGAA
26305156 T
1 T
26305157 AGAGTTTACT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.33
Consensus pattern (36 bp):
TTAGTTAGAATAGATCTAAAAGGCTACTGAATTGAA
Found at i:26305309 original size:40 final size:40
Alignment explanation
Indices: 26305265--26305343 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
26305255 GATGATTATG
26305265 TTAGTTCAATAAGGTATATTTTATTCATGTCCTCCATATA
1 TTAGTTCAATAAGGTATATTTTATTCATGTCCTCCATATA
26305305 TTAGTTCAATAAGGTATATTTTATTCATGTCCTCCATAT
1 TTAGTTCAATAAGGTATATTTTATTCATGTCCTCCATAT
26305344 CCTCAAAGAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.29, C:0.15, G:0.10, T:0.46
Consensus pattern (40 bp):
TTAGTTCAATAAGGTATATTTTATTCATGTCCTCCATATA
Found at i:26308710 original size:24 final size:25
Alignment explanation
Indices: 26308681--26308845 Score: 103
Period size: 24 Copynumber: 6.6 Consensus size: 25
26308671 CTGTATAACG
*
26308681 GGAAGCTCATAAGAGCCA-TAATTA
1 GGAAGCTCATAAGAGCCATTAATCA
** * *
26308705 GGAAGCTCATGCGAGCCA-AAAACA
1 GGAAGCTCATAAGAGCCATTAATCA
* *
26308729 GGTAGCTC-TGAAGAGCCATTAA-CG
1 GGAAGCTCAT-AAGAGCCATTAATCA
*
26308753 GGAAGCTC-TAGAGAGCCATTAATTA
1 GGAAGCTCATA-AGAGCCATTAATCA
* * *
26308778 GGAAGCTCACAAAGAGCCTTTAAGC-
1 GGAAGCTCA-TAAGAGCCATTAATCA
*
26308803 GGAAAGCTCATGAAGAGCCATATAAT-G
1 GG-AAGCTCAT-AAGAGCCAT-TAATCA
26308830 GGACA-CTCATAAGAGC
1 GGA-AGCTCATAAGAGC
26308846 TGCAGTGTGT
Statistics
Matches: 110, Mismatches: 20, Indels: 21
0.73 0.13 0.14
Matches are distributed among these distances:
23 2 0.02
24 52 0.47
25 18 0.16
26 31 0.28
27 7 0.06
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.18
Consensus pattern (25 bp):
GGAAGCTCATAAGAGCCATTAATCA
Found at i:26312746 original size:12 final size:12
Alignment explanation
Indices: 26312729--26312758 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
26312719 CCCCACATGC
26312729 CCGTGTGCTAGG
1 CCGTGTGCTAGG
26312741 CCGTGTGCTAGG
1 CCGTGTGCTAGG
26312753 CCGTGT
1 CCGTGT
26312759 AACTCTCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.27, G:0.40, T:0.27
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:26312757 original size:54 final size:54
Alignment explanation
Indices: 26312699--26312822 Score: 180
Period size: 54 Copynumber: 2.3 Consensus size: 54
26312689 GTGTATTCAC
26312699 CCGTGTAACTCACTGAGTTGCCCCACAT-G-CCCGTGTGCTAGGCCGTGTGCTAGG
1 CCGTGTAACTCACTGAGTTG--CCACATAGACCCGTGTGCTAGGCCGTGTGCTAGG
* * *
26312753 CCGTGTAACTCTCTAAGTTGCCACATAGACCCGTGTTCTAGGCCGTGTGCTAGG
1 CCGTGTAACTCACTGAGTTGCCACATAGACCCGTGTGCTAGGCCGTGTGCTAGG
*
26312807 CTGTGTAACTCACTGA
1 CCGTGTAACTCACTGA
26312823 CTTGAAACAA
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
52 6 0.10
53 1 0.02
54 55 0.89
ACGTcount: A:0.18, C:0.29, G:0.27, T:0.27
Consensus pattern (54 bp):
CCGTGTAACTCACTGAGTTGCCACATAGACCCGTGTGCTAGGCCGTGTGCTAGG
Found at i:26321170 original size:51 final size:51
Alignment explanation
Indices: 26321040--26321230 Score: 210
Period size: 51 Copynumber: 3.8 Consensus size: 51
26321030 AGTGAAAGTG
* *
26321040 ATGGTCA-AGTGTGTAGTACTATGTACAGGCTACTATGTGTACCGGA-A-TG
1 ATGGTCACA-TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
* *
26321089 ATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
* * * * * * *
26321140 TTCGATCACGTGTGTAGTACCATGTGCAGGCTACTAAGTGTATCGGATGGTA
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
* *
26321192 ATGGTCACATGTCTAGTACTATGTGTAGGCTACTATGTG
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
26321231 AACTGGACAT
Statistics
Matches: 117, Mismatches: 20, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
49 2 0.02
50 39 0.33
51 74 0.63
52 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATAGTA
Found at i:26323504 original size:27 final size:27
Alignment explanation
Indices: 26323474--26323546 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
26323464 GTGAACCCAA
26323474 AAAGAATAGCCTTTGTGGCAAACTAGG
1 AAAGAATAGCCTTTGTGGCAAACTAGG
* * * ** **
26323501 AAAGCATAACCTTTCTGGTGAACTTTG
1 AAAGAATAGCCTTTGTGGCAAACTAGG
26323528 AAAGAACT-GCCTTTGTGGC
1 AAAGAA-TAGCCTTTGTGGC
26323547 TTACTCTGAA
Statistics
Matches: 34, Mismatches: 11, Indels: 2
0.72 0.23 0.04
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (27 bp):
AAAGAATAGCCTTTGTGGCAAACTAGG
Found at i:26334396 original size:41 final size:41
Alignment explanation
Indices: 26334224--26334395 Score: 184
Period size: 41 Copynumber: 4.2 Consensus size: 41
26334214 AAGTTACTTG
* * * *
26334224 ATACAATACACCGACA-AGAAGCCTGCTAGGCTGAAGGCTTG
1 ATACAATACACCGGCACA-AAGCCTGCTAGGCTCAAGGCCTA
* * * *
26334265 ATGCAATACACCGGCTCAAAGCTTGCTAGGCTCAAGGCCTG
1 ATACAATACACCGGCACAAAGCCTGCTAGGCTCAAGGCCTA
* * *
26334306 ATTCAATACACCGGTACAAAGCCTACTAGGCTCAAGGCCTA
1 ATACAATACACCGGCACAAAGCCTGCTAGGCTCAAGGCCTA
* * * * *
26334347 ACATAATATACCGGCACAAAGCCTGCTAGGTTCAAGACCTA
1 ATACAATACACCGGCACAAAGCCTGCTAGGCTCAAGGCCTA
26334388 ATACAATA
1 ATACAATA
26334396 TCTCCAGTAC
Statistics
Matches: 108, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
41 107 0.99
42 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (41 bp):
ATACAATACACCGGCACAAAGCCTGCTAGGCTCAAGGCCTA
Found at i:26340262 original size:46 final size:45
Alignment explanation
Indices: 26340196--26340326 Score: 160
Period size: 43 Copynumber: 2.9 Consensus size: 45
26340186 AGTTACGTAG
* *
26340196 GAATCAAATTACTAAAAGATAATATCTTATAATAATATCCTACTAA
1 GAATCAAATTGCTAAGAGATAATATC-TATAATAATATCCTACTAA
* * * *
26340242 GAATAAAATTGCTAAGAGATAATATC-CT-ATGATATCCTATTAA
1 GAATCAAATTGCTAAGAGATAATATCTATAATAATATCCTACTAA
26340285 -AACTCAAATTGCTAAGAGATAATATCTCATAATAATATCCTA
1 GAA-TCAAATTGCTAAGAGATAATATCT-ATAATAATATCCTA
26340327 ACACATAGAC
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
42 2 0.03
43 35 0.49
44 1 0.01
45 1 0.01
46 33 0.46
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.32
Consensus pattern (45 bp):
GAATCAAATTGCTAAGAGATAATATCTATAATAATATCCTACTAA
Found at i:26341119 original size:70 final size:72
Alignment explanation
Indices: 26341027--26341171 Score: 215
Period size: 70 Copynumber: 2.0 Consensus size: 72
26341017 CAGAAAATTA
* * *
26341027 CAATATTTGAATAAAATGAGATGTTTTAAAT-ACCTTCTTATAAAAAACAAACAGT-ACCTCTAT
1 CAATATTTGAATAAAATGAGATGTTCT-AATCACCTCCTTATAAAAAACAAACAGTCAACTCTAT
26341090 CCAATAAG
65 CCAATAAG
* *
26341098 CAAT-TTTGAATAAAATGAGATGTTCTAATCACCTCCTTATCAAAAACAAATAGTCAACTCTATC
1 CAATATTTGAATAAAATGAGATGTTCTAATCACCTCCTTATAAAAAACAAACAGTCAACTCTATC
26341162 CAATAAG
66 CAATAAG
26341169 CAA
1 CAA
26341172 GTGATAGTAA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
69 3 0.04
70 42 0.63
71 22 0.33
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (72 bp):
CAATATTTGAATAAAATGAGATGTTCTAATCACCTCCTTATAAAAAACAAACAGTCAACTCTATC
CAATAAG
Found at i:26341481 original size:1 final size:1
Alignment explanation
Indices: 26341475--26341504 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
26341465 AAGCTGAAGG
*
26341475 AAAAAAAAAAAAAAAAAAAAAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26341505 GTGAAGAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.97, C:0.03, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:26342378 original size:34 final size:35
Alignment explanation
Indices: 26342321--26342387 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
26342311 TACAAACCCA
*
26342321 AAACCTCAAAAACAAAGCTCTAACTCTCATAGAAC
1 AAACCTCAAAAACAAAGCCCTAACTCTCATAGAAC
* * *
26342356 AAACCTGAAAACCAAA-CCCTAACTTTCATAGA
1 AAACCTCAAAAACAAAGCCCTAACTCTCATAGA
26342388 GTTCTCTCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 14 0.50
35 14 0.50
ACGTcount: A:0.48, C:0.28, G:0.06, T:0.18
Consensus pattern (35 bp):
AAACCTCAAAAACAAAGCCCTAACTCTCATAGAAC
Found at i:26347070 original size:13 final size:13
Alignment explanation
Indices: 26347052--26347078 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26347042 AAAGTGTAAA
26347052 TGGACTTTTTCAG
1 TGGACTTTTTCAG
26347065 TGGACTTTTTCAG
1 TGGACTTTTTCAG
26347078 T
1 T
26347079 AAGCAAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.22, T:0.48
Consensus pattern (13 bp):
TGGACTTTTTCAG
Found at i:26355580 original size:40 final size:40
Alignment explanation
Indices: 26355494--26355593 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
26355484 TTCATATAAT
* * * * * **
26355494 TATTTCCATATATCTGATTCATATAATTATTTTGTTTATC
1 TATTTCCATATAACTAATTCATACAACTATTTCGTACATC
* *
26355534 TGTTTCCATATAACTAATTCATACAACTCTTTCGTACATC
1 TATTTCCATATAACTAATTCATACAACTATTTCGTACATC
*
26355574 TATTTCCATATAACCAATTC
1 TATTTCCATATAACTAATTC
26355594 TTATAATCAT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.30, C:0.20, G:0.04, T:0.46
Consensus pattern (40 bp):
TATTTCCATATAACTAATTCATACAACTATTTCGTACATC
Found at i:26355598 original size:13 final size:13
Alignment explanation
Indices: 26355580--26355641 Score: 52
Period size: 13 Copynumber: 4.8 Consensus size: 13
26355570 CATCTATTTC
26355580 CATATAACCAATT
1 CATATAACCAATT
* * *
26355593 CTTATAATCATTT
1 CATATAACCAATT
* *
26355606 CACATAACCATTT
1 CATATAACCAATT
** *
26355619 TGTATAACTAATT
1 CATATAACCAATT
26355632 CATATAACCA
1 CATATAACCA
26355642 TTCGTCATCC
Statistics
Matches: 35, Mismatches: 14, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
13 35 1.00
ACGTcount: A:0.40, C:0.21, G:0.02, T:0.37
Consensus pattern (13 bp):
CATATAACCAATT
Found at i:26355754 original size:43 final size:45
Alignment explanation
Indices: 26355702--26355992 Score: 125
Period size: 45 Copynumber: 6.5 Consensus size: 45
26355692 TAGAGTCTCC
* * *
26355702 CAACCATGGTCTTATTTATGTT-TAG-CATGATGCCATA-GTCTTT
1 CAACTATGGTCTTATTCAT-TTCCAGTCATGATGCCATAGGTCTTT
* *
26355745 CAACTATGGTCTTATTCATTTCCCGTCATGTTGCCATAGTGTCTTT
1 CAACTATGGTCTTATTCATTTCCAGTCATGATGCCATAG-GTCTTT
* * ** * * * *
26355791 CAACTATGGTTTTACTC-TTTTGAATCGTGATGTCATAGCATCTTT
1 CAACTATGGTCTTATTCATTTCCAGTCATGATGCCATAG-GTCTTT
* * * * * * *
26355836 CAGCTATGGACTTACTT-ATCT-AAATCGTTATGCCATAGTGTCTTT
1 CAACTATGGTCTTA-TTCATTTCCAGTCATGATGCCATAG-GTCTTT
* * * * * * ** *
26355881 TAGCGATGGTCTTACTCGTCTAAATTC-TGATGCCATAGCGTCTTT
1 CAACTATGGTCTTATTCATTTCCAGTCATGATGCCATAG-GTCTTT
* * * *
26355926 CAACTATGGTTTTACTCAATTCCTA-T-AT-AGTGCTATAGTGTCTTT
1 CAACTATGGTCTTATTCATTTCC-AGTCATGA-TGCCATAG-GTCTTT
*
26355971 CAATTATGGTCTTATTCATTTC
1 CAACTATGGTCTTATTCATTTC
26355993 TCGAGCCAAT
Statistics
Matches: 188, Mismatches: 49, Indels: 20
0.73 0.19 0.08
Matches are distributed among these distances:
42 2 0.01
43 18 0.10
44 13 0.07
45 126 0.67
46 29 0.15
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.43
Consensus pattern (45 bp):
CAACTATGGTCTTATTCATTTCCAGTCATGATGCCATAGGTCTTT
Found at i:26355843 original size:45 final size:45
Alignment explanation
Indices: 26355729--26355942 Score: 168
Period size: 45 Copynumber: 4.8 Consensus size: 45
26355719 ATGTTTAGCA
* *** *
26355729 TGATGCCATA--GTCTTTCAACTATGGTCTTATTCATT-TCCCGTCA
1 TGATGCCATAGCGTCTTTCAACTATGGTCTTACTC-TTCT-AAATCG
* * * * *
26355773 TGTTGCCATAGTGTCTTTCAACTATGGTTTTACTCTTTTGAATCG
1 TGATGCCATAGCGTCTTTCAACTATGGTCTTACTCTTCTAAATCG
* * * *
26355818 TGATGTCATAGCATCTTTCAGCTATGGACTTACT-TATCTAAATCG
1 TGATGCCATAGCGTCTTTCAACTATGGTCTTACTCT-TCTAAATCG
* * * * * *
26355863 TTATGCCATAGTGTCTTTTAGCGATGGTCTTACTCGTCTAAATTC-
1 TGATGCCATAGCGTCTTTCAACTATGGTCTTACTCTTCTAAA-TCG
*
26355908 TGATGCCATAGCGTCTTTCAACTATGGTTTTACTC
1 TGATGCCATAGCGTCTTTCAACTATGGTCTTACTC
26355943 AATTCCTATA
Statistics
Matches: 134, Mismatches: 30, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
44 10 0.07
45 100 0.75
46 24 0.18
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.42
Consensus pattern (45 bp):
TGATGCCATAGCGTCTTTCAACTATGGTCTTACTCTTCTAAATCG
Found at i:26366414 original size:16 final size:16
Alignment explanation
Indices: 26366393--26366425 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
26366383 AAAGGAGAAG
26366393 AGAAAATAAAAACCCT
1 AGAAAATAAAAACCCT
26366409 AGAAAATAAAAACCCT
1 AGAAAATAAAAACCCT
26366425 A
1 A
26366426 AACCCTAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.18, G:0.06, T:0.12
Consensus pattern (16 bp):
AGAAAATAAAAACCCT
Found at i:26367247 original size:16 final size:17
Alignment explanation
Indices: 26367228--26367260 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26367218 ATTTTAACTT
26367228 TATAAAATAATT-AAAA
1 TATAAAATAATTGAAAA
*
26367244 TATAATATAATTGAAAA
1 TATAAAATAATTGAAAA
26367261 AAATGATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (17 bp):
TATAAAATAATTGAAAA
Found at i:26370010 original size:50 final size:50
Alignment explanation
Indices: 26369932--26370175 Score: 346
Period size: 50 Copynumber: 4.8 Consensus size: 50
26369922 ATTTGGGTAA
26369932 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
26369982 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
26370032 AGAGGTCCTATGTAAGACCATGTCTTGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * ** *
26370082 AGAGGTCCCCTGTAAGACCATGTCTGGGATTATGG-AATGGACACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGA-CATGGCGTTGG-CACCGAGATG
** *
26370133 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
26370176 TGTTATTATC
Statistics
Matches: 171, Mismatches: 19, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
50 123 0.72
51 21 0.12
52 27 0.16
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:26371996 original size:15 final size:15
Alignment explanation
Indices: 26371976--26372005 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26371966 AGTGTGTTGT
*
26371976 TTCACTTCTCCGAGA
1 TTCACTTCTCAGAGA
26371991 TTCACTTCTCAGAGA
1 TTCACTTCTCAGAGA
26372006 GGGTTACTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.33
Consensus pattern (15 bp):
TTCACTTCTCAGAGA
Found at i:26388075 original size:31 final size:31
Alignment explanation
Indices: 26388030--26388106 Score: 127
Period size: 31 Copynumber: 2.5 Consensus size: 31
26388020 CCCCAATATT
* *
26388030 TTTTTACACTCAATTCAATCTCTAAATGTCAA
1 TTTTT-CAATCAATTCAATCCCTAAATGTCAA
26388062 TTTTTCAATCAATTCAATCCCTAAATGTCAA
1 TTTTTCAATCAATTCAATCCCTAAATGTCAA
26388093 TTTTTCAATCAATT
1 TTTTTCAATCAATT
26388107 AAGCTCTTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
31 38 0.88
32 5 0.12
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.43
Consensus pattern (31 bp):
TTTTTCAATCAATTCAATCCCTAAATGTCAA
Found at i:26388258 original size:28 final size:29
Alignment explanation
Indices: 26388202--26388270 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 29
26388192 TTTTATACTC
26388202 AAAATCATAAAAATTATAGAAAAACATAAA
1 AAAAT-ATAAAAATTATAGAAAAACATAAA
* *
26388232 CAAATACTAAAAATT-T-GAAAAATATAAA
1 AAAATA-TAAAAATTATAGAAAAACATAAA
26388260 AAAATATAAAA
1 AAAATATAAAA
26388271 CTGAAAATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
27 5 0.14
28 16 0.46
29 2 0.06
30 12 0.34
ACGTcount: A:0.70, C:0.06, G:0.03, T:0.22
Consensus pattern (29 bp):
AAAATATAAAAATTATAGAAAAACATAAA
Done.