Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 83 of 153
Found at i:26388261 original size:9 final size:9
Alignment explanation
Indices: 26388202--26388270 Score: 50
Period size: 10 Copynumber: 7.2 Consensus size: 9
26388192 TTTTATACTC
26388202 AAAATCATAA
1 AAAAT-ATAA
*
26388212 AAATTATAGA
1 AAAATATA-A
*
26388222 AAAACATAA
1 AAAATATAA
26388231 ACAAATACT-A
1 A-AAATA-TAA
* *
26388241 AAAATTTGA
1 AAAATATAA
26388250 AAAATATAAA
1 AAAATAT-AA
26388260 AAAATATAA
1 AAAATATAA
26388269 AA
1 AA
26388271 CTGAAAATTT
Statistics
Matches: 47, Mismatches: 7, Indels: 11
0.72 0.11 0.17
Matches are distributed among these distances:
8 1 0.02
9 20 0.43
10 25 0.53
11 1 0.02
ACGTcount: A:0.70, C:0.06, G:0.03, T:0.22
Consensus pattern (9 bp):
AAAATATAA
Found at i:26388357 original size:27 final size:28
Alignment explanation
Indices: 26388326--26388379 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
26388316 AGTACCTTAT
* * *
26388326 TAAAAATATTATAAAAT-TATAGAAAAG
1 TAAAAAAATTAAAAAATATATAAAAAAG
26388353 TAAAAAAATTAAAAAATATATAAAAAA
1 TAAAAAAATTAAAAAATATATAAAAAA
26388380 TTATATGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (28 bp):
TAAAAAAATTAAAAAATATATAAAAAAG
Found at i:26388362 original size:19 final size:20
Alignment explanation
Indices: 26388326--26388624 Score: 78
Period size: 19 Copynumber: 15.8 Consensus size: 20
26388316 AGTACCTTAT
*
26388326 TAAAAATAT-TATAAAATTA
1 TAAAAATATATAAAAAATTA
*
26388345 TAGAAAA-GTA-AAAAAATTA
1 TA-AAAATATATAAAAAATTA
26388364 -AAAAATATATAAAAAATTA
1 TAAAAATATATAAAAAATTA
* *
26388383 TATGAATTATGATAAAAAAATTA
1 TA-AAAATAT-AT-AAAAAATTA
* * *
26388406 CAAAAAT-TATGATAATATT-
1 TAAAAATATAT-AAAAAATTA
*
26388425 TTAAAATATA-AAAAAA-T-
1 TAAAAATATATAAAAAATTA
* *
26388442 T-AAAA-ACATAAAAACTTA
1 TAAAAATATATAAAAAATTA
* * * *
26388460 TTAAAATTTACAAAATATTA
1 TAAAAATATATAAAAAATTA
* * *
26388480 -AAAAAT-TAGCATATAAGTTA
1 TAAAAATATA-TA-AAAAATTA
* * * * *
26388500 AAAAAAT-TATTATAACTGA
1 TAAAAATATATAAAAAATTA
*
26388519 GTCAAAAAT-TAT-TAAAA-T-
1 -T-AAAAATATATAAAAAATTA
26388537 TAAAAA-AT-TAAAAAATTA
1 TAAAAATATATAAAAAATTA
26388555 -AAAAATATAT---AAATTA
1 TAAAAATATATAAAAAATTA
*
26388571 TGAAAAA-ATAT-GAAAA-TA
1 T-AAAAATATATAAAAAATTA
26388589 TAAAAAT-TATTAAAAATATTA
1 TAAAAATATA-TAAAAA-ATTA
26388610 TAAAAATATATAAAA
1 TAAAAATATATAAAA
26388625 CTAAAAAAAT
Statistics
Matches: 208, Mismatches: 37, Indels: 68
0.66 0.12 0.22
Matches are distributed among these distances:
15 3 0.01
16 25 0.12
17 25 0.12
18 21 0.10
19 49 0.24
20 31 0.15
21 37 0.18
22 7 0.03
23 10 0.05
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (20 bp):
TAAAAATATATAAAAAATTA
Found at i:26388404 original size:23 final size:23
Alignment explanation
Indices: 26388353--26388420 Score: 81
Period size: 23 Copynumber: 3.1 Consensus size: 23
26388343 TATAGAAAAG
26388353 TAAAAAAATTA-AAAAA-TAT-A
1 TAAAAAAATTACAAAAATTATGA
* **
26388373 T-AAAAAATTATATGAATTATGA
1 TAAAAAAATTACAAAAATTATGA
26388395 TAAAAAAATTACAAAAATTATGA
1 TAAAAAAATTACAAAAATTATGA
26388418 TAA
1 TAA
26388421 TATTTTAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
19 9 0.23
20 4 0.10
21 3 0.08
22 2 0.05
23 21 0.54
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (23 bp):
TAAAAAAATTACAAAAATTATGA
Found at i:26388545 original size:8 final size:9
Alignment explanation
Indices: 26388522--26388643 Score: 103
Period size: 8 Copynumber: 13.7 Consensus size: 9
26388512 TAACTGAGTC
26388522 AAAAATTAT
1 AAAAATTAT
*
26388531 TAAAATTA-
1 AAAAATTAT
26388539 AAAAATTA-
1 AAAAATTAT
26388547 AAAAATTA-
1 AAAAATTAT
26388555 AAAAA-TAT
1 AAAAATTAT
*
26388563 ATAAATTAT
1 AAAAATTAT
*
26388572 GAAAAAATAT
1 -AAAAATTAT
*
26388582 GAAAA-TAT
1 AAAAATTAT
26388590 AAAAATTATT
1 AAAAATTA-T
26388600 AAAAATATTAT
1 -AAAA-ATTAT
26388611 AAAAA-TAT
1 AAAAATTAT
* *
26388619 ATAAAACTAA
1 A-AAAATTAT
26388629 AAAAATTAT
1 AAAAATTAT
26388638 AAAAAT
1 AAAAAT
26388644 AAAGACACTT
Statistics
Matches: 94, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
7 2 0.02
8 35 0.37
9 33 0.35
10 15 0.16
11 5 0.05
12 4 0.04
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:26388576 original size:27 final size:28
Alignment explanation
Indices: 26388522--26388644 Score: 116
Period size: 27 Copynumber: 4.6 Consensus size: 28
26388512 TAACTGAGTC
* * *
26388522 AAAAATTATTAAAAT-TA-AAA-AATTA
1 AAAAATTATAAAAATATATAAATTATAA
*
26388547 AAAAATTA-AAAAATATATAAATTATGA
1 AAAAATTATAAAAATATATAAATTATAA
* *
26388574 AAAAA-TATGAAAATATAAAAATTATTAA
1 AAAAATTATAAAAATATATAAATTA-TAA
*
26388602 AAATATTATAAAAATATATAAA--ACTAA
1 AAAAATTATAAAAATATATAAATTA-TAA
26388629 AAAAATTATAAAAATA
1 AAAAATTATAAAAATA
26388645 AAGACACTTA
Statistics
Matches: 81, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
24 5 0.06
25 10 0.12
26 5 0.06
27 41 0.51
28 6 0.07
29 14 0.17
ACGTcount: A:0.68, C:0.01, G:0.02, T:0.29
Consensus pattern (28 bp):
AAAAATTATAAAAATATATAAATTATAA
Found at i:26388633 original size:39 final size:38
Alignment explanation
Indices: 26388567--26388644 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 38
26388557 AAATATATAA
*
26388567 ATTATGAAAAAATATGAAAATATAAAAATTATTAAAAAT
1 ATTATGAAAAAATATGAAAATAAAAAAATTA-TAAAAAT
26388606 ATTAT-AAAAATATAT-AAAACTAAAAAAATTATAAAAAT
1 ATTATGAAAAA-ATATGAAAA-TAAAAAAATTATAAAAAT
26388644 A
1 A
26388645 AAGACACTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
38 17 0.47
39 19 0.53
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.29
Consensus pattern (38 bp):
ATTATGAAAAAATATGAAAATAAAAAAATTATAAAAAT
Found at i:26393212 original size:43 final size:43
Alignment explanation
Indices: 26393165--26393265 Score: 132
Period size: 43 Copynumber: 2.3 Consensus size: 43
26393155 TTAGTCAATG
* * * *
26393165 ATGCATTATGAGTGCTAGTAT-ATTTGCTTTGGTTTATATGATA
1 ATGCACTATGTGTGCTAGTATGA-TTGCTTAGATTTATATGATA
* *
26393208 ATGCACTATGTGTGCTAGTATGATTGCTTAGATTTATCTGATG
1 ATGCACTATGTGTGCTAGTATGATTGCTTAGATTTATATGATA
26393251 ATGCACTATGTGTGC
1 ATGCACTATGTGTGC
26393266 CAATATAATT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
43 50 0.98
44 1 0.02
ACGTcount: A:0.24, C:0.11, G:0.23, T:0.43
Consensus pattern (43 bp):
ATGCACTATGTGTGCTAGTATGATTGCTTAGATTTATATGATA
Found at i:26393293 original size:43 final size:42
Alignment explanation
Indices: 26393203--26393358 Score: 127
Period size: 43 Copynumber: 3.6 Consensus size: 42
26393193 TTGGTTTATA
* * * * * * *
26393203 TGATAATGCACTATGTGTGCTAGTATGATTGCTTAGATTTATC
1 TGATGATGCACTATGTGTGCCAATATAATTACTTCGACTT-TC
*
26393246 TGATGATGCACTATGTGTGCCAATATAATTACTTCGGTCTGTT-
1 TGATGATGCACTATGTGTGCCAATATAATTACTTC-GACT-TTC
* * *
26393289 TGATGATGCCCT-TCGTGTGCTAGTATAATTACTTCGACTTTCC
1 TGATGATGCACTAT-GTGTGCCAATATAATTACTTCGACTTT-C
* * *
26393332 CGATGATGCATTATGTGTGCCATTATA
1 TGATGATGCACTATGTGTGCCAATATA
26393359 TTTTGTTCAG
Statistics
Matches: 90, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 79 0.88
44 4 0.04
45 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.40
Consensus pattern (42 bp):
TGATGATGCACTATGTGTGCCAATATAATTACTTCGACTTTC
Found at i:26401661 original size:25 final size:25
Alignment explanation
Indices: 26401627--26401698 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 25
26401617 TCCTTTACAT
* *
26401627 ATATGTTCACGCGAGCTATGAATAA
1 ATATGCTCACACGAGCTATGAATAA
* * *
26401652 ATATGCTCACATGAGTTCTGAATAA
1 ATATGCTCACACGAGCTATGAATAA
* *
26401677 ATATGCTCACCCGAGCTGTGAA
1 ATATGCTCACACGAGCTATGAA
26401699 AATAGGCCTG
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (25 bp):
ATATGCTCACACGAGCTATGAATAA
Found at i:26422126 original size:16 final size:16
Alignment explanation
Indices: 26422105--26422149 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
26422095 GTTTGGTTTG
26422105 CTGTAATGGAATAGAA
1 CTGTAATGGAATAGAA
*
26422121 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAA
*
26422137 GTGTAATGGAATA
1 CTGTAATGGAATA
26422150 TAGTCGTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.40, C:0.04, G:0.29, T:0.27
Consensus pattern (16 bp):
CTGTAATGGAATAGAA
Found at i:26422464 original size:55 final size:55
Alignment explanation
Indices: 26422346--26422463 Score: 130
Period size: 56 Copynumber: 2.1 Consensus size: 55
26422336 GATTATTAAT
* * *
26422346 ATAAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATATAATTTA
1 ATAAA-AATAAATAATTTAATAAAATTTTAACATAAATATTATTAAATATAATTTA
* * * *
26422402 ATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATA-AATTTA
1 ATAAAAATAAATAATTTAATAAAATT-TTAACA-TAAATATTATTAAATATAATTTA
*
26422458 CTAAAA
1 ATAAAA
26422464 TCATAATATA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
55 18 0.35
56 21 0.40
57 13 0.25
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (55 bp):
ATAAAAATAAATAATTTAATAAAATTTTAACATAAATATTATTAAATATAATTTA
Found at i:26425027 original size:50 final size:50
Alignment explanation
Indices: 26424913--26425298 Score: 390
Period size: 51 Copynumber: 7.7 Consensus size: 50
26424903 TATCATTAGA
**
26424913 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AGTTTTACAA
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGG
* * * *
26424962 TTCACGTAGTAGCCTTCATACAGTACTACACATGTGATCAAGTTTTACGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGG
*
26425012 CT-CACTTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGG
1 -TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGG
*
26425062 CT-CACGTAGTAGCCTTCACATAGTACTACATACGTGATCAAAGCTTTT-CGG
1 -TACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTTTACGG
* * * * * * * *
26425113 TACCCATTGTAGCCTTCACTTAGTACTACACATGTAACCATAG-TTTACCGA
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCA-AGTTTTA-CGG
* * *
26425164 TACACGTAGTAGCATTCACACAGTACTACACACGTGCTCAAAGCTTTT-CGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTTTACGG
* * * * * *
26425215 TACACATAGTAGCCTTCACTTAGTACTACACATGTGA-CCATTATTTATCGA
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGT-TTTA-CGG
* *
26425266 TACACGTAGTAGCCTCCACACAGTACTACACAC
1 TACACGTAGTAGCCTTCACATAGTACTACACAC
26425299 ATGTTCATCG
Statistics
Matches: 277, Mismatches: 46, Indels: 26
0.79 0.13 0.07
Matches are distributed among these distances:
48 1 0.00
49 42 0.15
50 92 0.33
51 134 0.48
52 5 0.02
53 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (50 bp):
TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGG
Found at i:26425190 original size:102 final size:102
Alignment explanation
Indices: 26424921--26425298 Score: 450
Period size: 102 Copynumber: 3.7 Consensus size: 102
26424911 GATACACGTA
* * * *
26424921 GTAGCCTTCACATAGTACTACACACGTGATC-AGTTTTA-CAATTCACGTAGTAGCCTTCATACA
1 GTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACCGATACACGTAGTAGCCTTCACACA
*
26424984 GTACTACACATGTGATC-AAG-TTTTACGGCT-CAC-TT
66 GTACTACACACGTGATCAAAGCTTTT-CGG-TACACATT
* * * *
26425019 AGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGCT-CACGTAGTAGCCTTCACAT
1 -GTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACCGATACACGTAGTAGCCTTCACAC
* *
26425083 AGTACTACATACGTGATCAAAGCTTTTCGGTACCCATT
65 AGTACTACACACGTGATCAAAGCTTTTCGGTACACATT
* * * *
26425121 GTAGCCTTCACTTAGTACTACACATGTAACCATAG-TTTACCGATACACGTAGTAGCATTCACAC
1 GTAGCCTTCACATAGTACTACACACGTGACCA-AGTTTTACCGATACACGTAGTAGCCTTCACAC
* *
26425185 AGTACTACACACGTGCTCAAAGCTTTTCGGTACACATA
65 AGTACTACACACGTGATCAAAGCTTTTCGGTACACATT
* * * * *
26425223 GTAGCCTTCACTTAGTACTACACATGTGACC-ATTATTTATCGATACACGTAGTAGCCTCCACAC
1 GTAGCCTTCACATAGTACTACACACGTGACCAAGT-TTTACCGATACACGTAGTAGCCTTCACAC
26425287 AGTACTACACAC
65 AGTACTACACAC
26425299 ATGTTCATCG
Statistics
Matches: 244, Mismatches: 25, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
99 31 0.13
100 42 0.17
101 44 0.18
102 127 0.52
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (102 bp):
GTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACCGATACACGTAGTAGCCTTCACACA
GTACTACACACGTGATCAAAGCTTTTCGGTACACATT
Found at i:26426480 original size:229 final size:229
Alignment explanation
Indices: 26426079--26426533 Score: 883
Period size: 229 Copynumber: 2.0 Consensus size: 229
26426069 GATGATTTTT
26426079 GCCATTTTTTTCCCTTTTTATTCTTTTTATTACCAAATGACTAAAATGCCCCATTTAAAAAAAAT
1 GCCATTTTTTTCCCTTTTTATTCTTTTTATTACCAAATGACTAAAATGCCCCATTTAAAAAAAAT
26426144 CTATTTCACCCATTTCTTATGTCTATCTTTGTCCATCAATTTACTAATGGTCTAATTACCACATA
66 CTATTTCACCCATTTCTTATGTCTATCTTTGTCCATCAATTTACTAATGGTCTAATTACCACATA
*
26426209 AGGACCTCCAATTTAAAATTTCATAACAATTAGACACCTCTAAGATGTAGAACTCAACTTTTGCA
131 AGGACCTCCAATTTAAAATTTCATAACAATTAGACACCTCTAACATGTAGAACTCAACTTTTGCA
26426274 CTTTTTACAATTTAGTCCTTTTGACTAAATTGAA
196 CTTTTTACAATTTAGTCCTTTTGACTAAATTGAA
26426308 GCCATTTTTTTCCCTTTTTATTCTTTTTATTACCAAATGACTAAAATGCCCCATTTAAAAAAAAT
1 GCCATTTTTTTCCCTTTTTATTCTTTTTATTACCAAATGACTAAAATGCCCCATTTAAAAAAAAT
* *
26426373 CTATTTCACCCATTTCTTATGTCTATCTTTTTCCATCAATTTACTAATGGTTTAATTACCACATA
66 CTATTTCACCCATTTCTTATGTCTATCTTTGTCCATCAATTTACTAATGGTCTAATTACCACATA
26426438 AGGACCTCCAATTTAAAATTTCATAACAATTAGACACCTCTAACATGTAGAACTCAACTTTTGCA
131 AGGACCTCCAATTTAAAATTTCATAACAATTAGACACCTCTAACATGTAGAACTCAACTTTTGCA
26426503 CTTTTTACAATTTAGTCCTTTTGACTAAATT
196 CTTTTTACAATTTAGTCCTTTTGACTAAATT
26426534 AAATACCCAA
Statistics
Matches: 223, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
229 223 1.00
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (229 bp):
GCCATTTTTTTCCCTTTTTATTCTTTTTATTACCAAATGACTAAAATGCCCCATTTAAAAAAAAT
CTATTTCACCCATTTCTTATGTCTATCTTTGTCCATCAATTTACTAATGGTCTAATTACCACATA
AGGACCTCCAATTTAAAATTTCATAACAATTAGACACCTCTAACATGTAGAACTCAACTTTTGCA
CTTTTTACAATTTAGTCCTTTTGACTAAATTGAA
Found at i:26428010 original size:6 final size:6
Alignment explanation
Indices: 26427955--26428008 Score: 74
Period size: 6 Copynumber: 9.2 Consensus size: 6
26427945 TCCAAATTTT
* *
26427955 AGCAAA AGTAAA AGCAAC AGCAAA AGCAAA AGCAAA AGCAAA A-CAAA
1 AGCAAA AGCAAA AGCAAA AGCAAA AGCAAA AGCAAA AGCAAA AGCAAA
*
26428002 ATCAAA A
1 AGCAAA A
26428009 TCGATTTTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
5 5 0.12
6 38 0.88
ACGTcount: A:0.67, C:0.17, G:0.13, T:0.04
Consensus pattern (6 bp):
AGCAAA
Found at i:26428726 original size:50 final size:49
Alignment explanation
Indices: 26428621--26428811 Score: 193
Period size: 50 Copynumber: 3.7 Consensus size: 49
26428611 TAACGAGATC
*
26428621 CCATGTAAGACCATGTCTGGGACATGGCATTGGTATCATTGAAGTTATGAGAGGT
1 CCATGTAAGACCATGTCTGGGACATGGCATTGG---CACTG-AG--ATGAGAGGT
* *
26428676 CTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
1 C-CATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGT
** * * **
26428726 CCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATGAGAACT
1 -CCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGT
* * *
26428776 CCTATGTAAGAACATATCTGGGATATGGCATTGGCA
1 CC-ATGTAAGACCATGTCTGGGACATGGCATTGGCA
26428812 GTATAAGAAA
Statistics
Matches: 116, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
49 2 0.02
50 76 0.66
51 1 0.01
52 2 0.02
53 3 0.03
55 1 0.01
56 31 0.27
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAGGT
Found at i:26428804 original size:100 final size:104
Alignment explanation
Indices: 26428625--26428811 Score: 240
Period size: 100 Copynumber: 1.8 Consensus size: 104
26428615 GAGATCCCAT
* * ** *
26428625 GTAAGACCATGTCTGGGACATGGCATTGGTATCATTGAAGTTATGAGAGGTCTCATGTAAGACCA
1 GTAAGACCATGTCTGGGACATGGCATTGG-AGCACTGAAG-TATGAGAACTCTCATGTAAGAACA
* *
26428690 TGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCC
64 TATCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCC
26428731 GTAAGACCATGTCTGGGACATGGCA-TGG-GCACTG-A-TATGAGAACTC-CTATGTAAGAACAT
1 GTAAGACCATGTCTGGGACATGGCATTGGAGCACTGAAGTATGAGAACTCTC-ATGTAAGAACAT
*
26428791 ATCTGGGATATGGCATTGGCA
65 ATCTGGGACATGGCATTGGCA
26428812 GTATAAGAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
99 1 0.01
100 38 0.53
102 1 0.01
103 4 0.06
105 3 0.04
106 25 0.35
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (104 bp):
GTAAGACCATGTCTGGGACATGGCATTGGAGCACTGAAGTATGAGAACTCTCATGTAAGAACATA
TCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCC
Found at i:26430375 original size:22 final size:22
Alignment explanation
Indices: 26430317--26430375 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
26430307 GAATGGTATC
26430317 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
26430339 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
26430362 TACATATCAAATCT
1 TACAAATCAAATCT
26430376 ACGATTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
23 14 0.44
24 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:26435341 original size:22 final size:22
Alignment explanation
Indices: 26435283--26435341 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
26435273 GAATGGTATC
26435283 TACAAATCAAATCTCTAAGATT
1 TACAAATCAAATCTCTAAGATT
*
26435305 TACAAAATCATATCTCCTAAGA-T
1 TAC-AAATCAAATCT-CTAAGATT
*
26435328 TACATATCAAATCT
1 TACAAATCAAATCT
26435342 ACGATTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 12 0.38
23 14 0.44
24 6 0.19
ACGTcount: A:0.44, C:0.20, G:0.03, T:0.32
Consensus pattern (22 bp):
TACAAATCAAATCTCTAAGATT
Found at i:26436829 original size:64 final size:64
Alignment explanation
Indices: 26436752--26436878 Score: 182
Period size: 64 Copynumber: 2.0 Consensus size: 64
26436742 GTAAACAAAT
* * * * * *
26436752 TGAATTAGCGAATAGAATAATTTTTGCAGTGTCCACCAAGAAAATGATTGTTTAAGGTGCAGAC
1 TGAATTAGAGAATAGAATAATTTATACAGTGTCCACCAAGAAAATGATTATTCAAGGCGCAGAC
* *
26436816 TGAATTGGAGAATAGAATAATTTATACAGTGTCCGCCAAGAAAATGATTATTCAAGGCGCAGA
1 TGAATTAGAGAATAGAATAATTTATACAGTGTCCACCAAGAAAATGATTATTCAAGGCGCAGA
26436879 TGCTTATGTA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.28
Consensus pattern (64 bp):
TGAATTAGAGAATAGAATAATTTATACAGTGTCCACCAAGAAAATGATTATTCAAGGCGCAGAC
Found at i:26438801 original size:27 final size:27
Alignment explanation
Indices: 26438763--26438894 Score: 124
Period size: 27 Copynumber: 4.9 Consensus size: 27
26438753 ATCTGGATCA
26438763 AAATACCCTCGAAGGGTAAAATGACTG
1 AAATACCCTCGAAGGGTAAAATGACTG
* ** *
26438790 AAATACCTTCGATTGGTAAAATGACAG
1 AAATACCCTCGAAGGGTAAAATGACTG
* * **
26438817 AAATGCCCCCTTAGGGTAAAATGACT-
1 AAATACCCTCGAAGGGTAAAATGACTG
* *
26438843 AACATACCCTCGATGGGTAAAATAACTG
1 AA-ATACCCTCGAAGGGTAAAATGACTG
* *
26438871 AAATGCCC-CCATAGGGTAAAATGA
1 AAATACCCTCGA-AGGGTAAAATGA
26438895 TCGAAATTAT
Statistics
Matches: 80, Mismatches: 22, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
26 4 0.05
27 74 0.93
28 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (27 bp):
AAATACCCTCGAAGGGTAAAATGACTG
Found at i:26438838 original size:54 final size:54
Alignment explanation
Indices: 26438775--26438894 Score: 179
Period size: 54 Copynumber: 2.2 Consensus size: 54
26438765 ATACCCTCGA
* * * *
26438775 AGGGTAAAATGACTGAA-ATACCTTCGATTGGTAAAATGACAGAAATGCCCCCTT
1 AGGGTAAAATGACT-AACATACCCTCGATGGGTAAAATAACAGAAATGCCCCCAT
*
26438829 AGGGTAAAATGACTAACATACCCTCGATGGGTAAAATAACTGAAATGCCCCCAT
1 AGGGTAAAATGACTAACATACCCTCGATGGGTAAAATAACAGAAATGCCCCCAT
26438883 AGGGTAAAATGA
1 AGGGTAAAATGA
26438895 TCGAAATTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 2 0.03
54 58 0.97
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.22
Consensus pattern (54 bp):
AGGGTAAAATGACTAACATACCCTCGATGGGTAAAATAACAGAAATGCCCCCAT
Found at i:26438900 original size:27 final size:27
Alignment explanation
Indices: 26438804--26439244 Score: 306
Period size: 27 Copynumber: 16.4 Consensus size: 27
26438794 ACCTTCGATT
* * *
26438804 GGTAAAATGACAGAAATGCCCCCT-TAG
1 GGTAAAATGACCGTAAT-ACCCCTATAG
*
26438831 GGTAAAATGA-C-TAACATACCCTCGAT-G
1 GGTAAAATGACCGT-A-ATACCC-CTATAG
* * * * *
26438858 GGTAAAATAACTGAAATGCCCCCATAG
1 GGTAAAATGACCGTAATACCCCTATAG
* * * *
26438885 GGTAAAATGATCGAAATTATCCC-GTAG
1 GGTAAAATGACCGTAA-TACCCCTATAG
* * ** *
26438912 GGTAGAA-CACCAAAATACCCCTATAT
1 GGTAAAATGACCGTAATACCCCTATAG
* *
26438938 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTATAG
* ** *
26438965 GATAAAATGGTCGTAATACCCCTATAT
1 GGTAAAATGACCGTAATACCCCTATAG
* * * * *
26438992 GGTAAAATAACCGTAATGCCCTTGTAT
1 GGTAAAATGACCGTAATACCCCTATAG
* *
26439019 GGTAAAATGATCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTATAG
* ** *
26439046 GGTAAAATGACCATAATGGCCCTATAT
1 GGTAAAATGACCGTAATACCCCTATAG
* *
26439073 GGTAAAATAACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTATAG
* * * *
26439100 GGTAAAATAATCGCAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTATAG
26439127 GGTAAAATGACCGTAATACCCCTATAG
1 GGTAAAATGACCGTAATACCCCTATAG
* *
26439154 GGTAAAATAACCGTAAGT--CCTTATAG
1 GGTAAAATGACCGTAA-TACCCCTATAG
** * *
26439180 GGTAAAATGATTGTAATGCTCC-AGTAG
1 GGTAAAATGACCGTAATACCCCTA-TAG
* * *
26439207 GGTAAGATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTATAG
26439234 GGTAAAATGAC
1 GGTAAAATGAC
26439245 TATTTTTCCC
Statistics
Matches: 323, Mismatches: 76, Indels: 30
0.75 0.18 0.07
Matches are distributed among these distances:
25 6 0.02
26 41 0.13
27 269 0.83
28 7 0.02
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTATAG
Found at i:26438913 original size:81 final size:81
Alignment explanation
Indices: 26438765--26438915 Score: 180
Period size: 81 Copynumber: 1.9 Consensus size: 81
26438755 CTGGATCAAA
* * * * * *
26438765 ATACCCTCGAAGGGTAAAATGACTGAAATACCTTCGATTGGTAAAATGACAGAAATGCCCCCTTA
1 ATACCCTCGAAGGGTAAAATAACTGAAATACCTCCCATGGGTAAAATGACAGAAATGACCCCGTA
26438830 GGGTAAAATGACTAAC
66 GGGTAAAATGACTAAC
* * * *
26438846 ATACCCTCGATGGGTAAAATAACTGAAATGCC-CCCATAGGGTAAAATGATC-GAAATTATCCCG
1 ATACCCTCGAAGGGTAAAATAACTGAAATACCTCCCAT-GGGTAAAATGA-CAGAAATGACCCCG
26438909 TAGGGTA
64 TAGGGTA
26438916 GAACACCAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
80 3 0.05
81 54 0.93
82 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (81 bp):
ATACCCTCGAAGGGTAAAATAACTGAAATACCTCCCATGGGTAAAATGACAGAAATGACCCCGTA
GGGTAAAATGACTAAC
Found at i:26439037 original size:81 final size:81
Alignment explanation
Indices: 26438938--26439241 Score: 403
Period size: 81 Copynumber: 3.8 Consensus size: 81
26438928 ACCCCTATAT
* ** *
26438938 GGTAAAATGATCGTAATACCCCTGTAGGATAAAATGGTCGTAATACCCCTATATGGTAAAATAAC
1 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATAAC
*
26439003 CGTAATGCCCTTGTAT
66 CGTAATGCCCTTGTAG
* ** *
26439019 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCATAATGGCCCTATATGGTAAAATAAC
1 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATAAC
* *
26439084 CGTAATACCCCTGTAG
66 CGTAATGCCCTTGTAG
* *
26439100 GGTAAAATAATCGCAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATAAC
1 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATAAC
* *
26439165 CGTAA-GTCCTTATAG
66 CGTAATGCCCTTGTAG
* * * * * * *
26439180 GGTAAAATGATTGTAATGCTCCAGTAGGGTAAGATGACCGTAATGCCCCTGTAGGGTAAAAT
1 GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAAT
26439242 GACTATTTTT
Statistics
Matches: 195, Mismatches: 28, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
80 59 0.30
81 136 0.70
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (81 bp):
GGTAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATAAC
CGTAATGCCCTTGTAG
Found at i:26439291 original size:24 final size:24
Alignment explanation
Indices: 26439261--26439442 Score: 249
Period size: 24 Copynumber: 7.6 Consensus size: 24
26439251 TCCCTCAAGG
* **
26439261 TTAAATGATTGATTTACCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
* * *
26439285 GTAAATGACTGATTTGTCCGAGAT
1 TTAAATGACTGATTTGTCTGTGAT
*
26439309 GTAAATGACTGATTTGTCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
26439333 TTAAATGACTGATTTGTCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
26439357 TTAAATGACTGATTTGTCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
* *
26439381 TTAAATGACTAATTTTTCTGTGAT
1 TTAAATGACTGATTTGTCTGTGAT
26439405 TTAAATGA-TAGATTTGTCTGTGAT
1 TTAAATGACT-GATTTGTCTGTGAT
**
26439429 TTGTATGACTGATT
1 TTAAATGACTGATT
26439443 CTGTGCATGG
Statistics
Matches: 141, Mismatches: 15, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
23 1 0.01
24 139 0.99
25 1 0.01
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.45
Consensus pattern (24 bp):
TTAAATGACTGATTTGTCTGTGAT
Found at i:26439554 original size:27 final size:27
Alignment explanation
Indices: 26439511--26439570 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 27
26439501 GGAAGTATTG
26439511 TACTGGTGGCTCTGCCACA-ATCACTGT
1 TACTGGTGGCTCTGCCACATAT-ACTGT
26439538 TACTGGTGGCT-TGGCCACATATACTGT
1 TACTGGTGGCTCT-GCCACATATACTGT
26439565 TACTGG
1 TACTGG
26439571 CAACTTTGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
26 1 0.03
27 28 0.90
28 2 0.06
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.32
Consensus pattern (27 bp):
TACTGGTGGCTCTGCCACATATACTGT
Found at i:26439596 original size:26 final size:26
Alignment explanation
Indices: 26439558--26439623 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
26439548 TTGGCCACAT
* *
26439558 ATACTGTTACTGGCAACTTTGCTGCA
1 ATACTATTGCTGGCAACTTTGCTGCA
* *
26439584 ATACTATTGCTGGCAGCTTTGCTGCG
1 ATACTATTGCTGGCAACTTTGCTGCA
* *
26439610 ATGCTATTGATGGC
1 ATACTATTGCTGGC
26439624 TTTCTGCCGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.35
Consensus pattern (26 bp):
ATACTATTGCTGGCAACTTTGCTGCA
Found at i:26439771 original size:32 final size:32
Alignment explanation
Indices: 26439617--26439772 Score: 161
Period size: 32 Copynumber: 4.9 Consensus size: 32
26439607 GCGATGCTAT
* **
26439617 TGATGGCTTTCTGCCGATCATATTACCATTAC
1 TGATGGCTTTGTGCCGATCATATTACTGTTAC
* *
26439649 TGATGGCTTTGTGCCGATCATATCACCGTTAC
1 TGATGGCTTTGTGCCGATCATATTACTGTTAC
** * * *
26439681 TGATGG-TTGTGTATCGATCATGTCACTGCTAC
1 TGATGGCTT-TGTGCCGATCATATTACTGTTAC
* * *
26439713 TGTTGGCTTTGTGCCGGTCATGTTACTGTTAC
1 TGATGGCTTTGTGCCGATCATATTACTGTTAC
* *
26439745 TGATGGCTTTGTGCCAATCACATTACTG
1 TGATGGCTTTGTGCCGATCATATTACTG
26439773 AACTTATGGC
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
31 2 0.02
32 99 0.96
33 2 0.02
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATATTACTGTTAC
Found at i:26443143 original size:27 final size:26
Alignment explanation
Indices: 26443102--26443561 Score: 271
Period size: 27 Copynumber: 17.1 Consensus size: 26
26443092 TCGATATTTG
*
26443102 GACCGAAATACCCTCGAAGGGTAAAAT
1 GACCGTAATACCC-CGAAGGGTAAAAT
* * *
26443129 GATCGAAATACCCTCGATGGGTAAAAT
1 GACCGTAATACCC-CGAAGGGTAAAAT
* * * * *
26443156 GATCGAAATGCCCCCATAAGGTAAAAT
1 GACCGTAATACCCCGA-AGGGTAAAAT
* * *
26443183 GATCGAAATACCCCCGTAA-TGTAAAAT
1 GACCGTAATA-CCCCG-AAGGGTAAAAT
* *
26443210 -ATCGAAATACCCTC-ATAGGGTAAAAT
1 GACCGTAATACCC-CGA-AGGGTAAAAT
*
26443236 GACCGTAATACCCTTGAAGGGTAAAAT
1 GACCGTAATACCC-CGAAGGGTAAAAT
*
26443263 GACCGTAATACCCCTGTAGGGTAAAAT
1 GACCGTAATACCCC-GAAGGGTAAAAT
* * * * *
26443290 AACCGTAATTCCCCTGTATGGTAAAAC
1 GACCGTAATACCCC-GAAGGGTAAAAT
* ** *
26443317 AACCGTAATACCCCTGTCGGGAAAAAT
1 GACCGTAATACCCC-GAAGGGTAAAAT
* *
26443344 GACCGTAATGCCCCTATAGGGTAAAAT
1 GACCGTAATACCCCGA-AGGGTAAAAT
*
26443371 GACCGTAATACCCCTATAGGGTAAAAT
1 GACCGTAATACCCCGA-AGGGTAAAAT
* * *
26443398 GATCATAATGCCCCTGTAA-GGTAAAAT
1 GACCGTAATACCCC-G-AAGGGTAAAAT
* *
26443425 GACCGTAATACCCTTGTAGGGTAAAAT
1 GACCGTAATACCC-CGAAGGGTAAAAT
* **
26443452 GATCGTAATACCCTTATAGGGTAAAAT
1 GACCGTAATACCCCGA-AGGGTAAAAT
* * * *
26443479 GATCGTAATGCCTCTGTAGGGTAAAAT
1 GACCGTAATACC-CCGAAGGGTAAAAT
* * * * * *
26443506 GACTGTAATGCAACTGTAGGGTAAGAT
1 GACCGTAATAC-CCCGAAGGGTAAAAT
* * *
26443533 GACCATAATGCCCCTATAGGGTAAAAT
1 GACCGTAATACCCCGA-AGGGTAAAAT
26443560 GA
1 GA
26443562 TTATTTTGCC
Statistics
Matches: 358, Mismatches: 57, Indels: 36
0.79 0.13 0.08
Matches are distributed among these distances:
24 1 0.00
25 4 0.01
26 22 0.06
27 320 0.89
28 9 0.03
29 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (26 bp):
GACCGTAATACCCCGAAGGGTAAAAT
Found at i:26443514 original size:54 final size:54
Alignment explanation
Indices: 26443225--26443561 Score: 388
Period size: 54 Copynumber: 6.2 Consensus size: 54
26443215 AATACCCTCA
* *
26443225 TAGGGTAAAATGACCGTAATACCCTTGA-AGGGTAAAATGACCGTAATACCCCTG
1 TAGGGTAAAATGACCGTAATGCCCCT-ATAGGGTAAAATGACCGTAATACCCCTG
* * * * **
26443279 TAGGGTAAAATAACCGTAATTCCCCTGTATGGTAAAACAACCGTAATACCCCTG
1 TAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCCCTG
* * *
26443333 TCGGGAAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCCCTA
1 TAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCCCTG
* * * * *
26443387 TAGGGTAAAATGATCATAATGCCCCTGTAAGGTAAAATGACCGTAATACCCTTG
1 TAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCCCTG
* * * * * *
26443441 TAGGGTAAAATGATCGTAATACCCTTATAGGGTAAAATGATCGTAATGCCTCTG
1 TAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCCCTG
* ** * * * * *
26443495 TAGGGTAAAATGACTGTAATGCAACTGTAGGGTAAGATGACCATAATGCCCCTA
1 TAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCCCTG
26443549 TAGGGTAAAATGA
1 TAGGGTAAAATGA
26443562 TTATTTTGCC
Statistics
Matches: 237, Mismatches: 45, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
54 237 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (54 bp):
TAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCCCTG
Found at i:26443562 original size:81 final size:81
Alignment explanation
Indices: 26443102--26443562 Score: 453
Period size: 81 Copynumber: 5.7 Consensus size: 81
26443092 TCGATATTTG
* * * * * *
26443102 GACCGAAATA-CCCTCGAAGGGTAAAATGATCGAAATACCCTCGAT-GGGTAAAATGATCGAAAT
1 GACCGTAATACCCCT-GTAGGGTAAAATGACCGTAATACCC-CTATAGGGTAAAATGATCGTAAT
* ** *
26443165 GCCCCCATAAGGTAAAAT
64 ACCCCTGTAGGGTAAAAT
* * * ** * * *
26443183 GATCGAAATACCCCCGTAATGTAAAAT-ATCGAAATA-CCCTCATAGGGTAAAATGACCGTAATA
1 GACCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCT-ATAGGGTAAAATGATCGTAATA
* *
26443246 CCCTTGAAGGGTAAAAT
65 CCCCTGTAGGGTAAAAT
* * * * ** *
26443263 GACCGTAATACCCCTGTAGGGTAAAATAACCGTAATTCCCCTGTATGGTAAAACAACCGTAATAC
1 GACCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGATCGTAATAC
* *
26443328 CCCTGTCGGGAAAAAT
66 CCCTGTAGGGTAAAAT
* * * *
26443344 GACCGTAATGCCCCTATAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGATCATAATGC
1 GACCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGATCGTAATAC
*
26443409 CCCTGTAAGGTAAAAT
66 CCCTGTAGGGTAAAAT
* * * *
26443425 GACCGTAATACCCTTGTAGGGTAAAATGATCGTAATACCCTTATAGGGTAAAATGATCGTAATGC
1 GACCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGATCGTAATAC
*
26443490 CTCTGTAGGGTAAAAT
66 CCCTGTAGGGTAAAAT
* * ** * * *
26443506 GACTGTAATGCAACTGTAGGGTAAGATGACCATAATGCCCCTATAGGGTAAAATGAT
1 GACCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGAT
26443563 TATTTTGCCC
Statistics
Matches: 313, Mismatches: 62, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
78 1 0.00
79 4 0.01
80 59 0.19
81 242 0.77
82 7 0.02
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (81 bp):
GACCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTATAGGGTAAAATGATCGTAATAC
CCCTGTAGGGTAAAAT
Found at i:26443594 original size:25 final size:23
Alignment explanation
Indices: 26443551--26443694 Score: 69
Period size: 24 Copynumber: 6.0 Consensus size: 23
26443541 TGCCCCTATA
*
26443551 GGGTAAAATGATT-ATTTTGCCCTTG
1 GGGTTAAATGATTGA-TTTG-CC-TG
26443576 GGGTTAAATGATTGATTTGCCTG
1 GGGTTAAATGATTGATTTGCCTG
* * *
26443599 TGATGTAAATGATTGATTTTTCC-G
1 GGGT-TAAATGATTGA-TTTGCCTG
* * *
26443623 AGATGTAAATGACTT-ATTTGACTG
1 GGGT-TAAATGA-TTGATTTGCCTG
** *
26443647 TGATTTAAATGATTGATTTGTCTG
1 -GGGTTAAATGATTGATTTGCCTG
** *
26443671 TGATTTAAATAATTGATTTGCCTG
1 -GGGTTAAATGATTGATTTGCCTG
26443695 TGATTTGTAT
Statistics
Matches: 99, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
23 10 0.10
24 64 0.65
25 24 0.24
26 1 0.01
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.43
Consensus pattern (23 bp):
GGGTTAAATGATTGATTTGCCTG
Found at i:26443699 original size:24 final size:24
Alignment explanation
Indices: 26443579--26443700 Score: 149
Period size: 24 Copynumber: 5.1 Consensus size: 24
26443569 GCCCTTGGGG
26443579 TTAAATGATTGATTTGCCTGTGAT
1 TTAAATGATTGATTTGCCTGTGAT
* * *
26443603 GTAAATGATTGATTTTTCC-GAGAT
1 TTAAATGATTGA-TTTGCCTGTGAT
* *
26443627 GTAAATGACTT-ATTTGACTGTGAT
1 TTAAATGA-TTGATTTGCCTGTGAT
*
26443651 TTAAATGATTGATTTGTCTGTGAT
1 TTAAATGATTGATTTGCCTGTGAT
*
26443675 TTAAATAATTGATTTGCCTGTGAT
1 TTAAATGATTGATTTGCCTGTGAT
26443699 TT
1 TT
26443701 GTATGACTGA
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
23 6 0.07
24 71 0.85
25 7 0.08
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.46
Consensus pattern (24 bp):
TTAAATGATTGATTTGCCTGTGAT
Found at i:26444001 original size:32 final size:32
Alignment explanation
Indices: 26443864--26444007 Score: 119
Period size: 32 Copynumber: 4.5 Consensus size: 32
26443854 TGCTATGGAC
* *
26443864 GGCTTTGTACCGATCATATTACCATTACTGAT
1 GGCTTTGTGCCGATCATATCACCATTACTGAT
** * * *
26443896 GGCTTTGTGTTGATCATGTCACTATTATTGAT
1 GGCTTTGTGCCGATCATATCACCATTACTGAT
* *** * *
26443928 GGCTATGTATGGATTATATCA-CAGCTACTGAT
1 GGCTTTGTGCCGATCATATCACCA-TTACTGAT
* * *
26443960 GGCTTTGTGCCGATCATGTTACCATTACTAAT
1 GGCTTTGTGCCGATCATATCACCATTACTGAT
*
26443992 GGCTTTGTGCCAATCA
1 GGCTTTGTGCCGATCA
26444008 CATTACTAAA
Statistics
Matches: 85, Mismatches: 25, Indels: 4
0.75 0.22 0.04
Matches are distributed among these distances:
31 1 0.01
32 82 0.96
33 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (32 bp):
GGCTTTGTGCCGATCATATCACCATTACTGAT
Found at i:26444044 original size:22 final size:22
Alignment explanation
Indices: 26444019--26444070 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
26444009 ATTACTAAAC
* *
26444019 TTATGGCTTGTAGCCATTCTGT
1 TTATGGCTTATAGCCATCCTGT
* *
26444041 TTATAGCTTATAGCTATCCTGT
1 TTATGGCTTATAGCCATCCTGT
*
26444063 TTACGGCT
1 TTATGGCT
26444071 CTTAGTCGTT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.17, C:0.19, G:0.19, T:0.44
Consensus pattern (22 bp):
TTATGGCTTATAGCCATCCTGT
Found at i:26444207 original size:24 final size:24
Alignment explanation
Indices: 26444174--26444235 Score: 115
Period size: 24 Copynumber: 2.6 Consensus size: 24
26444164 ATCCCCACAT
*
26444174 GAGTGTAGGGTTGGACAAGAGATG
1 GAGTGCAGGGTTGGACAAGAGATG
26444198 GAGTGCAGGGTTGGACAAGAGATG
1 GAGTGCAGGGTTGGACAAGAGATG
26444222 GAGTGCAGGGTTGG
1 GAGTGCAGGGTTGG
26444236 TATGGGTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.26, C:0.06, G:0.48, T:0.19
Consensus pattern (24 bp):
GAGTGCAGGGTTGGACAAGAGATG
Found at i:26460539 original size:23 final size:24
Alignment explanation
Indices: 26460505--26460549 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
26460495 TTTATCACAA
*
26460505 TAATTGTAATAA-TGATGCAGATT
1 TAATTGTAATAATTGAAGCAGATT
26460528 TAATTG-AGATAATTGAAGCAGA
1 TAATTGTA-ATAATTGAAGCAGA
26460550 ATGATTGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 1 0.05
23 10 0.53
24 8 0.42
ACGTcount: A:0.42, C:0.04, G:0.20, T:0.33
Consensus pattern (24 bp):
TAATTGTAATAATTGAAGCAGATT
Found at i:26462567 original size:20 final size:20
Alignment explanation
Indices: 26462542--26462581 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
26462532 TTGCAAGTAC
26462542 GTGTTATTAATTTATTATTT
1 GTGTTATTAATTTATTATTT
*
26462562 GTGTTATTGATTTATTATTT
1 GTGTTATTAATTTATTATTT
26462582 TAAATTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (20 bp):
GTGTTATTAATTTATTATTT
Found at i:26468842 original size:6 final size:6
Alignment explanation
Indices: 26468833--26468858 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
26468823 AGAGAAGCGG
26468833 AGGGGA AGGGGA AGGGGA AGGGGA AG
1 AGGGGA AGGGGA AGGGGA AGGGGA AG
26468859 TAGAAGAGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (6 bp):
AGGGGA
Found at i:26480227 original size:26 final size:24
Alignment explanation
Indices: 26480175--26480227 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 24
26480165 CACAAATCTA
*
26480175 AAATTAGTAAAGTTCATAAAGGTT
1 AAATTAGTAAAGTTCATAAAGGAT
* *
26480199 AAATTAGTAAAAAGTTCATTAATGAT
1 AAATTAGT--AAAGTTCATAAAGGAT
26480225 AAA
1 AAA
26480228 AATAAAAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 8 0.33
26 16 0.67
ACGTcount: A:0.51, C:0.04, G:0.13, T:0.32
Consensus pattern (24 bp):
AAATTAGTAAAGTTCATAAAGGAT
Found at i:26481507 original size:25 final size:26
Alignment explanation
Indices: 26481478--26481590 Score: 130
Period size: 25 Copynumber: 4.6 Consensus size: 26
26481468 TTACCAATTG
26481478 CAGCTCGTGA-GAGCTTACCGATTCT
1 CAGCTCGTGATGAGCTTACCGATTCT
* *
26481503 CAGCTC-TTATGAGCTTACCGATT-G
1 CAGCTCGTGATGAGCTTACCGATTCT
* *
26481527 CATCTCGTGA-GAGCTTATCGATTCT
1 CAGCTCGTGATGAGCTTACCGATTCT
* *
26481552 CAGCTCGT-ATAAGCTTACCGATTCA
1 CAGCTCGTGATGAGCTTACCGATTCT
26481577 CAGCTCGT-ATGAGC
1 CAGCTCGTGATGAGC
26481591 ATACATATAC
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
24 20 0.27
25 53 0.73
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (26 bp):
CAGCTCGTGATGAGCTTACCGATTCT
Found at i:26481540 original size:49 final size:49
Alignment explanation
Indices: 26481468--26481584 Score: 171
Period size: 49 Copynumber: 2.4 Consensus size: 49
26481458 CCATTAGGGA
* * *
26481468 TTACCAATTGCAGCTCGTGAGAGCTTACCGATTCTCAGCTCTTATGAGC
1 TTACCGATTGCAGCTCGTGAGAGCTTACCGATTCTCAGCTCGTATAAGC
* *
26481517 TTACCGATTGCATCTCGTGAGAGCTTATCGATTCTCAGCTCGTATAAGC
1 TTACCGATTGCAGCTCGTGAGAGCTTACCGATTCTCAGCTCGTATAAGC
*
26481566 TTACCGATTCACAGCTCGT
1 TTACCGATT-GCAGCTCGT
26481585 ATGAGCATAC
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
49 53 0.88
50 7 0.12
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (49 bp):
TTACCGATTGCAGCTCGTGAGAGCTTACCGATTCTCAGCTCGTATAAGC
Found at i:26488469 original size:12 final size:11
Alignment explanation
Indices: 26488444--26488481 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
26488434 GAAACCCGAG
26488444 AAGAAAAA--A
1 AAGAAAAACTA
26488453 AAGAAAAACTA
1 AAGAAAAACTA
26488464 AGAGAAAAACTA
1 A-AGAAAAACTA
26488476 AAGAAA
1 AAGAAA
26488482 CCTTAAGCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 8 0.31
11 7 0.27
12 11 0.42
ACGTcount: A:0.76, C:0.05, G:0.13, T:0.05
Consensus pattern (11 bp):
AAGAAAAACTA
Found at i:26491507 original size:23 final size:23
Alignment explanation
Indices: 26491477--26491545 Score: 104
Period size: 23 Copynumber: 3.0 Consensus size: 23
26491467 AACACTCTAT
* *
26491477 ATATGCACTGTAGTGCCAAAATG
1 ATATGCACTGAAGTGCCAGAATG
26491500 ATATGCACTGAAGTGCCAGAATG
1 ATATGCACTGAAGTGCCAGAATG
26491523 A-ATTGCACTGAAGTGCCAGAATG
1 ATA-TGCACTGAAGTGCCAGAATG
26491546 CTCCCACCAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
22 1 0.02
23 42 0.98
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (23 bp):
ATATGCACTGAAGTGCCAGAATG
Found at i:26496304 original size:4 final size:4
Alignment explanation
Indices: 26496295--26496400 Score: 212
Period size: 4 Copynumber: 26.5 Consensus size: 4
26496285 AACTTCTCAT
26496295 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
26496343 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
26496391 ATAC ATAC AT
1 ATAC ATAC AT
26496401 CAACTTGTCA
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 102 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:26498615 original size:4 final size:4
Alignment explanation
Indices: 26498598--26498633 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
26498588 TAAGAGAAAT
*
26498598 TAAA TAAC TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
26498634 CGACTAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:26515277 original size:34 final size:35
Alignment explanation
Indices: 26515238--26515316 Score: 106
Period size: 38 Copynumber: 2.2 Consensus size: 35
26515228 TAATGTTTGC
26515238 CATGAA-AACTTAGTTTCTCTTGAGATTAGACATA
1 CATGAAGAACTTAGTTTCTCTTGAGATTAGACATA
* *
26515272 CATGAAGGTTTATTTAGTTTCTCTTGAGATTAGACATA
1 CATGAA-G--AACTTAGTTTCTCTTGAGATTAGACATA
26515310 CATGAAG
1 CATGAAG
26515317 GTTTATATCT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
34 6 0.15
37 1 0.03
38 32 0.82
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.37
Consensus pattern (35 bp):
CATGAAGAACTTAGTTTCTCTTGAGATTAGACATA
Found at i:26515290 original size:38 final size:38
Alignment explanation
Indices: 26515247--26515322 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
26515237 CCATGAAAAC
26515247 TTAGTTTCTCTTGAGATTAGACATACATGAAGGTTTAT
1 TTAGTTTCTCTTGAGATTAGACATACATGAAGGTTTAT
26515285 TTAGTTTCTCTTGAGATTAGACATACATGAAGGTTTAT
1 TTAGTTTCTCTTGAGATTAGACATACATGAAGGTTTAT
26515323 ATCTTTAGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.42
Consensus pattern (38 bp):
TTAGTTTCTCTTGAGATTAGACATACATGAAGGTTTAT
Found at i:26520203 original size:27 final size:27
Alignment explanation
Indices: 26520173--26520270 Score: 151
Period size: 27 Copynumber: 3.6 Consensus size: 27
26520163 CGTTTCGACC
*
26520173 CACAGCTCGTTTGAGCAGGCCCATTTT
1 CACAGCTCGTGTGAGCAGGCCCATTTT
*
26520200 CACAGCTTGTGTGAGCAGGCCCATTTT
1 CACAGCTCGTGTGAGCAGGCCCATTTT
26520227 CACAGCTCGTGTGAGCAGGCCCATTTT
1 CACAGCTCGTGTGAGCAGGCCCATTTT
* * *
26520254 TAGAGCCCGTGTGAGCA
1 CACAGCTCGTGTGAGCA
26520271 TACATGTACA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.19, C:0.28, G:0.27, T:0.27
Consensus pattern (27 bp):
CACAGCTCGTGTGAGCAGGCCCATTTT
Found at i:26524713 original size:27 final size:27
Alignment explanation
Indices: 26524497--26524719 Score: 223
Period size: 27 Copynumber: 8.3 Consensus size: 27
26524487 CGAAAAGGTT
* * *
26524497 GTAAAATTATCGAAATACCCCCAAAGG
1 GTAAAATTACCGAAATACCCTCGAAGG
* * * * *
26524524 GTAAAATTATCAAAACATCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGAAGG
*
26524551 GTAAAATTACCGAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGAAGG
** * *
26524578 GTAAAATTACTAAAATACCCTTGATGG
1 GTAAAATTACCGAAATACCCTCGAAGG
* * * *
26524605 GTAAAATTACCAAAATTCCCCCGAAAG
1 GTAAAATTACCGAAATACCCTCGAAGG
* *
26524632 GTAAAATTACCGGAATACCCTCGAAAG
1 GTAAAATTACCGAAATACCCTCGAAGG
* *
26524659 GTAAAATTACCGAGATAACCCT-AAAGG
1 GTAAAATTACCGAAAT-ACCCTCGAAGG
* *
26524686 GTAAAATTACCGAAATACGCTCGTAGG
1 GTAAAATTACCGAAATACCCTCGAAGG
26524713 GTAAAAT
1 GTAAAAT
26524720 GACTATTATA
Statistics
Matches: 163, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 4 0.02
27 154 0.94
28 5 0.03
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.22
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCTCGAAGG
Found at i:26526285 original size:27 final size:27
Alignment explanation
Indices: 26526255--26526323 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
26526245 TATAGTCTCC
26526255 TGGGATAGTAAACA-GAAGATAGTCCAT
1 TGGGATAGTAAACACG-AGATAGTCCAT
* *
26526282 TGGGATAGTAAACACGAGGTAGTCCGT
1 TGGGATAGTAAACACGAGATAGTCCAT
26526309 TGGGATAGTAAACAC
1 TGGGATAGTAAACAC
26526324 AGGGATTACA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 38 0.97
28 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.29, T:0.22
Consensus pattern (27 bp):
TGGGATAGTAAACACGAGATAGTCCAT
Found at i:26537659 original size:27 final size:29
Alignment explanation
Indices: 26537625--26537686 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 29
26537615 TACAAATTGG
*
26537625 AATAAAAATA-ACTGTCAAAAT-AAAA-AA
1 AATAAAAACATACT-TCAAAATCAAAATAA
*
26537652 AATAAAAACATAGTTCAAAATCAAAATAA
1 AATAAAAACATACTTCAAAATCAAAATAA
26537681 AATAAA
1 AATAAA
26537687 GAAGTCTCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 16 0.53
28 6 0.20
29 8 0.27
ACGTcount: A:0.69, C:0.08, G:0.03, T:0.19
Consensus pattern (29 bp):
AATAAAAACATACTTCAAAATCAAAATAA
Found at i:26540726 original size:22 final size:22
Alignment explanation
Indices: 26540701--26540748 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
26540691 TACCTTAATT
*
26540701 GTACTGTATGGAAAAATATTTA
1 GTACTGCATGGAAAAATATTTA
*
26540723 GTACTGCATGGAAAAATGTTTA
1 GTACTGCATGGAAAAATATTTA
26540745 GTAC
1 GTAC
26540749 CACAAATGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.33
Consensus pattern (22 bp):
GTACTGCATGGAAAAATATTTA
Found at i:26555431 original size:25 final size:24
Alignment explanation
Indices: 26555403--26555464 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
26555393 AGGCATTACA
*
26555403 CCACATAGGCTTTACAGGTAACCTG
1 CCACA-AGGCTTTACAGATAACCTG
* *
26555428 CCACAACGACTTTACAGATAACTTG
1 CCACAA-GGCTTTACAGATAACCTG
26555453 CCACAAAGGCTT
1 CCAC-AAGGCTT
26555465 CCCAAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
24 1 0.03
25 28 0.90
26 2 0.06
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (24 bp):
CCACAAGGCTTTACAGATAACCTG
Found at i:26560916 original size:22 final size:21
Alignment explanation
Indices: 26560874--26560921 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
26560864 CAACAAAAAA
26560874 ATAGTTAAATATTTATAAATT
1 ATAGTTAAATATTTATAAATT
26560895 GATAGTTAAA-ATTTGA-ACAATT
1 -ATAGTTAAATATTT-ATA-AATT
26560917 ATAGT
1 ATAGT
26560922 AATTGTGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.42
Consensus pattern (21 bp):
ATAGTTAAATATTTATAAATT
Found at i:26561466 original size:34 final size:34
Alignment explanation
Indices: 26561423--26561487 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
26561413 TTTACTCTCC
*
26561423 TTATGCAGTGTCCAACAATTACAAAATCTCATCT
1 TTATGCAGTGTACAACAATTACAAAATCTCATCT
*
26561457 TTATGCAGTGTACAACAATTATAAAATCTCA
1 TTATGCAGTGTACAACAATTACAAAATCTCA
26561488 GCTTAAGGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.32
Consensus pattern (34 bp):
TTATGCAGTGTACAACAATTACAAAATCTCATCT
Found at i:26565684 original size:27 final size:27
Alignment explanation
Indices: 26565620--26565751 Score: 147
Period size: 27 Copynumber: 4.9 Consensus size: 27
26565610 TCCGTAGTAT
* * * * *
26565620 GCCACAAAGGTTATCCTTGCAGGGTTC
1 GCCACAAAGGTTTTTCTTTCATGATTC
*
26565647 GCCACAGAGGTTTTTCTTTCATGATTC
1 GCCACAAAGGTTTTTCTTTCATGATTC
* * * * * *
26565674 ACCATAAAGGTTGTTCTTTAACGATTT
1 GCCACAAAGGTTTTTCTTTCATGATTC
26565701 GCCACAAAGGTTTTTCTTTCATGATTC
1 GCCACAAAGGTTTTTCTTTCATGATTC
*
26565728 GCCACAAAGGGTTTTCTTTCATGA
1 GCCACAAAGGTTTTTCTTTCATGA
26565752 CGTGTTTATG
Statistics
Matches: 85, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GCCACAAAGGTTTTTCTTTCATGATTC
Found at i:26568681 original size:29 final size:32
Alignment explanation
Indices: 26568640--26568703 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 32
26568630 ATAATTTGTA
26568640 TTTTTATAGTTTTTAAAAGACT-AAAT-TAAT
1 TTTTTATAGTTTTTAAAAGACTAAAATGTAAT
* * *
26568670 TTTTTTTA-TTTTTAGAAGGCTAAAATGTAAT
1 TTTTTATAGTTTTTAAAAGACTAAAATGTAAT
26568701 TTT
1 TTT
26568704 GGCGTTATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.34, C:0.03, G:0.09, T:0.53
Consensus pattern (32 bp):
TTTTTATAGTTTTTAAAAGACTAAAATGTAAT
Found at i:26571065 original size:3 final size:3
Alignment explanation
Indices: 26571057--26571095 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
26571047 TAGTCCCCAT
26571057 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26571096 CTATATATAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:26571251 original size:85 final size:83
Alignment explanation
Indices: 26571162--26571424 Score: 289
Period size: 76 Copynumber: 3.3 Consensus size: 83
26571152 TAAAAAAAAC
*
26571162 TTTTATAAACACATGCACATATTATATATATATATTATTATCATTCTATTTGCATAACTTTTATA
1 TTTTATATACACAT-CACATATTATATATATAT-TTATTATCATTCTATTTGCATAACTTTTATA
26571227 TACCTATATATTCATTTATG
64 TACCTATATATTCATTTATG
* * * *
26571247 TTTTATATACATAT-ACATATT-T-T-TAT-TTTATT-TTATTTTATTT-CCTAACTTTTATATA
1 TTTTATATACACATCACATATTATATATATATTTATTATCATTCTATTTGCATAACTTTTATATA
* * *
26571305 CATATATATACA--CACT-
66 CCTATATATTCATTTA-TG
* **
26571321 TTTT-TATTCAGGTCACATATTATATATATATTTTATTATCATTCTATTTGCATAACTTTTATAT
1 TTTTATATACACATCACATATTATATATATA-TTTATTATCATTCTATTTGCATAACTTTTATAT
*
26571385 ACCTATATATTCATTTACG
65 ACCTATATATTCATTTATG
*
26571404 TTTTATATACATAT-ACATATT
1 TTTTATATACACATCACATATT
26571425 TTTATTTTTA
Statistics
Matches: 144, Mismatches: 21, Indels: 28
0.75 0.11 0.15
Matches are distributed among these distances:
73 6 0.04
74 12 0.08
75 2 0.01
76 25 0.17
77 12 0.08
78 5 0.03
79 7 0.05
80 12 0.08
81 25 0.17
82 1 0.01
83 19 0.13
84 6 0.04
85 12 0.08
ACGTcount: A:0.33, C:0.13, G:0.03, T:0.52
Consensus pattern (83 bp):
TTTTATATACACATCACATATTATATATATATTTATTATCATTCTATTTGCATAACTTTTATATA
CCTATATATTCATTTATG
Found at i:26571268 original size:25 final size:27
Alignment explanation
Indices: 26571220--26571277 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
26571210 TTTGCATAAC
* * *
26571220 TTTTATATACCTATATATTCATTTATG
1 TTTTATATACATATACATTCATTTATA
*
26571247 TTTTATATACATATACA-T-ATTTTTA
1 TTTTATATACATATACATTCATTTATA
26571272 TTTTAT
1 TTTTAT
26571278 TTTATTTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 11 0.41
26 1 0.04
27 15 0.56
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.59
Consensus pattern (27 bp):
TTTTATATACATATACATTCATTTATA
Found at i:26571379 original size:157 final size:151
Alignment explanation
Indices: 26571177--26571484 Score: 544
Period size: 157 Copynumber: 2.0 Consensus size: 151
26571167 TAAACACATG
26571177 CACATATTATATATATATATTATTATCATTCTATTTGCATAACTTTTATATACCTATATATTCAT
1 CACATATTATATATATATATTATTATCATTCTATTTGCATAACTTTTATATACCTATATATTCAT
*
26571242 TTATGTTTTATATACATATACATATTTTTATTTTATTTTATTTTATTTCCTAACTTTTATATACA
66 TTACGTTTTATATACATATACATATTTTTA---T-TTTTATTTTATTTCCTAACTTTTATATAC-
26571307 TATATATACACACTTTTTTATTCAGGT
126 -ATATATACACACTTTTTTATTCAGGT
*
26571334 CACATATTATATATATATTTTATTATCATTCTATTTGCATAACTTTTATATACCTATATATTCAT
1 CACATATTATATATATATATTATTATCATTCTATTTGCATAACTTTTATATACCTATATATTCAT
26571399 TTACGTTTTATATACATATACATATTTTTATTTTTATTTTATTTCCTAACTTTTATATACATATA
66 TTACGTTTTATATACATATACATATTTTTATTTTTATTTTATTTCCTAACTTTTATATACATATA
26571464 TACACACTTTTTTATTCAGGT
131 TACACACTTTTTTATTCAGGT
26571485 TTCAATTTTT
Statistics
Matches: 149, Mismatches: 2, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
151 26 0.17
153 29 0.19
154 1 0.01
157 93 0.62
ACGTcount: A:0.31, C:0.13, G:0.03, T:0.53
Consensus pattern (151 bp):
CACATATTATATATATATATTATTATCATTCTATTTGCATAACTTTTATATACCTATATATTCAT
TTACGTTTTATATACATATACATATTTTTATTTTTATTTTATTTCCTAACTTTTATATACATATA
TACACACTTTTTTATTCAGGT
Found at i:26580154 original size:44 final size:44
Alignment explanation
Indices: 26580016--26580154 Score: 115
Period size: 44 Copynumber: 3.2 Consensus size: 44
26580006 AGACACTAGC
*
26580016 CTTGCCTCCCTGGGTTGCAGCGGAGCAAGTTAAAAATAGCAGAT
1 CTTGCCTCTCTGGGTTGCAGCGGAGCAAGTTAAAAATAGCAGAT
* **** ** ** *
26580060 CTTACCT-TCCTGCACCGACAGCAAAGC-AGATCGAAAATA-CTAG-C
1 CTTGCCTCT-CTGGGTTG-CAGCGGAGCAAG-TTAAAAATAGC-AGAT
26580104 CTTGCCTCTCTGGGTTGCAGCGGAGCAAGTTAAAAATAGCAGAT
1 CTTGCCTCTCTGGGTTGCAGCGGAGCAAGTTAAAAATAGCAGAT
26580148 CTTGCCT
1 CTTGCCT
26580155 TCCTGCACCG
Statistics
Matches: 66, Mismatches: 21, Indels: 16
0.64 0.20 0.16
Matches are distributed among these distances:
43 16 0.24
44 33 0.50
45 17 0.26
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (44 bp):
CTTGCCTCTCTGGGTTGCAGCGGAGCAAGTTAAAAATAGCAGAT
Found at i:26580240 original size:44 final size:44
Alignment explanation
Indices: 26580192--26580335 Score: 103
Period size: 44 Copynumber: 3.3 Consensus size: 44
26580182 AGATACCAGC
26580192 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAATAGCAAAT
1 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAATAGCAAAT
* * * *** * * ** * * * **
26580236 CTTGCAT-TCTTGCACCGACAGCGAAGCAGATCGAAGACA-CCAGC
1 CTTGCCTCCCTAG-GTTG-CAGCGGAGCAGGTTAAAAATAGCAAAT
*
26580280 CTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAAAT
1 CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAATAGCAAAT
*
26580324 CTTGCCTTCCTA
1 CTTGCCTCCCTA
26580336 CACCGACAGC
Statistics
Matches: 64, Mismatches: 32, Indels: 8
0.62 0.31 0.08
Matches are distributed among these distances:
43 18 0.28
44 28 0.44
45 18 0.28
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (44 bp):
CTTGCCTCCCTAGGTTGCAGCGGAGCAGGTTAAAAATAGCAAAT
Found at i:26580468 original size:88 final size:88
Alignment explanation
Indices: 26579782--26580456 Score: 927
Period size: 88 Copynumber: 7.7 Consensus size: 88
26579772 AGCAAATTAG
* * *
26579782 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCAAAGCATATCGAAGACACCAGCCTTGTCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * *
26579847 CCCTAGGTTGTAGCGGAGTAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* ** * *
26579870 TAAAAATAGCAGATCTTACCTTCCTGCACCGACAATGAAGCAGATCAAAGACACTAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
26579935 CCTTGGGTTGCAGCGAAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * * * * * *
26579958 TAAAAATAACAGATCTTGTCTTCCTGCACTGACAGCGAAACATATCAAAGACACTAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
26580023 CCCTGGGTTGCAGCGGAGCAAGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * * * *
26580046 TAAAAATAGCAGATCTTACCTTCCTGCACCGACAGCAAAGCAGATCGAAAATACTAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
26580111 CTCTGGGTTGCAGCGGAGCAAGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * *
26580134 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGTGAAGCAAATCGAAGATACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
26580199 CCCTAGGTTGCAGCGGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * *
26580222 TAAAAATAGCAAATCTTGCATTCTTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
26580287 CCCTGGGTTGCAGCGGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * * *
26580310 TAAAAATAGCAAATCTTGCCTTCCTACACCGACAGCGAAACAGATCGAAAACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
26580375 CCCTGGGTTGCAACGGAGCAGGT
66 CCCTGGGTTGCAGCGGAGCAGGT
* * * * * * *
26580398 TAAAAATAACATATCTTGCCTTCCTGCACGGATAGCGAAGCAAATCGATGACCCCAGCC
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCC
26580457 CTATCTCCCT
Statistics
Matches: 520, Mismatches: 67, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 520 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (88 bp):
TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
CCCTGGGTTGCAGCGGAGCAGGT
Found at i:26580546 original size:44 final size:44
Alignment explanation
Indices: 26580458--26580553 Score: 122
Period size: 44 Copynumber: 2.2 Consensus size: 44
26580448 ACCCCAGCCC
* * **
26580458 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCT
1 TATCTCCCCGGTCAGCAGTGGAATAGGTTGAAAATTCAGAATCT
* *
26580502 TGTCTCCCCGGTCAGCAGTGGAGTAGGTTGAAAATTACAG-ATCT
1 TATCTCCCCGGTCAGCAGTGGAATAGGTTGAAAATT-CAGAATCT
26580546 TATCTCCC
1 TATCTCCC
26580554 TAAGCAGTAG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 43 0.98
45 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (44 bp):
TATCTCCCCGGTCAGCAGTGGAATAGGTTGAAAATTCAGAATCT
Found at i:26581156 original size:44 final size:44
Alignment explanation
Indices: 26581063--26581166 Score: 129
Period size: 44 Copynumber: 2.4 Consensus size: 44
26581053 CCAGATGGCG
* * *
26581063 AATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTAAAGACAAC
* * *
26581107 AATCTTATCTCCCTGAGGTTATAGCGGAGCGGATTAAA-ATAAC
1 AATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTAAAGACAAC
*
26581150 AGATCTTATCTCTCTGA
1 A-ATCTTATCTCCCTGA
26581167 AGTTGTAGTA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
43 3 0.06
44 49 0.94
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTAAAGACAAC
Found at i:26582038 original size:15 final size:16
Alignment explanation
Indices: 26582000--26582038 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
26581990 CGCGTCTTTT
26582000 TTTTATTTTTTATTTA
1 TTTTATTTTTTATTTA
*
26582016 TTCT-TTTTTTA-TTA
1 TTTTATTTTTTATTTA
26582030 TTTTATTTT
1 TTTTATTTT
26582039 GTAACAAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
14 6 0.30
15 11 0.55
16 3 0.15
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTATTTTTTATTTA
Found at i:26582622 original size:3 final size:3
Alignment explanation
Indices: 26582614--26582661 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
26582604 TGTTATTAAG
*
26582614 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26582662 CTATATATAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:26583024 original size:28 final size:28
Alignment explanation
Indices: 26582993--26583082 Score: 87
Period size: 28 Copynumber: 3.1 Consensus size: 28
26582983 ATTAATTTCA
26582993 ATATATGTAATTATTATTATTTTTTTAT
1 ATATATGTAATTATTATTATTTTTTTAT
*
26583021 ATATATGTAATTATCT-TT-TTTATAATCTAT
1 ATATATGTAATTAT-TATTATTT-T--TTTAT
* *
26583051 ATATTTGTAGATAATTATTA-TTTTTTAT
1 ATATATGTA-ATTATTATTATTTTTTTAT
26583079 ATAT
1 ATAT
26583083 GTACATGTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
27 3 0.06
28 25 0.49
29 1 0.02
30 14 0.27
31 8 0.16
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (28 bp):
ATATATGTAATTATTATTATTTTTTTAT
Found at i:26587953 original size:29 final size:29
Alignment explanation
Indices: 26587911--26587989 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
26587901 AAGGCAAACC
26587911 ATACAGTA-TATGCCACAAAGGTTATAT-AT
1 ATACAG-AGTATGCCACAAAGGTTAT-TCAT
*
26587940 ATACAGAGTATGCCACAAAGGTGATTCAT
1 ATACAGAGTATGCCACAAAGGTTATTCAT
*
26587969 -T-CAGAGTAAGCCACAAAGGTT
1 ATACAGAGTATGCCACAAAGGTT
26587990 GTTAGAATGG
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
27 18 0.40
28 3 0.07
29 24 0.53
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.25
Consensus pattern (29 bp):
ATACAGAGTATGCCACAAAGGTTATTCAT
Found at i:26590106 original size:27 final size:27
Alignment explanation
Indices: 26590053--26590108 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
26590043 NNNGATTATG
* *
26590053 TAGCACTAAGTGTGCGAGTTGATTATA
1 TAGCACTAAGTGTGCGACTTGAATATA
*
26590080 TAGCACTGAGTGTGCGGACTT-AATATA
1 TAGCACTAAGTGTGC-GACTTGAATATA
26590107 TA
1 TA
26590109 TTCTTGAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.32
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGACTTGAATATA
Found at i:26599481 original size:12 final size:11
Alignment explanation
Indices: 26599452--26599508 Score: 52
Period size: 12 Copynumber: 5.5 Consensus size: 11
26599442 TTCTCAAAAT
26599452 AAATAAAATAA
1 AAATAAAATAA
26599463 AAATAAAACTAA
1 AAATAAAA-TAA
* *
26599475 GAATAAAA-AT
1 AAATAAAATAA
26599485 AAAT-AAAT--
1 AAATAAAATAA
26599493 AAAT-AAATAA
1 AAATAAAATAA
26599503 AAATAA
1 AAATAA
26599509 GGAAAAAGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
8 8 0.21
9 3 0.08
10 8 0.21
11 9 0.24
12 10 0.26
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:26599497 original size:18 final size:18
Alignment explanation
Indices: 26599448--26599508 Score: 61
Period size: 18 Copynumber: 3.1 Consensus size: 18
26599438 ATAATTCTCA
26599448 AAATAAATAAAATAAAAAT
1 AAATAAAT-AAATAAAAAT
26599467 AAAACTAAGAATAAA-AATAAAT
1 -AAA-T-A-AATAAATAA-AAAT
26599489 AAATAAATAAATAAAAAT
1 AAATAAATAAATAAAAAT
26599507 AA
1 AA
26599509 GGAAAAAGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
18 12 0.33
19 3 0.08
20 4 0.11
21 6 0.17
22 8 0.22
23 3 0.08
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.20
Consensus pattern (18 bp):
AAATAAATAAATAAAAAT
Found at i:26599700 original size:14 final size:15
Alignment explanation
Indices: 26599681--26599709 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26599671 CAGCTTCGAT
26599681 AGGAGAAAA-GAAGA
1 AGGAGAAAAGGAAGA
26599695 AGGAGAAAAGGAAGA
1 AGGAGAAAAGGAAGA
26599710 GTCATGGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (15 bp):
AGGAGAAAAGGAAGA
Found at i:26610713 original size:16 final size:16
Alignment explanation
Indices: 26610687--26610720 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
26610677 ATCATAGTTT
26610687 AATTAATTTAAACATTA
1 AATTAATTTAAAC-TTA
26610704 AATTAA-TTAAACTTA
1 AATTAATTTAAACTTA
26610719 AA
1 AA
26610721 GCCCTTAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 6 0.35
17 6 0.35
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (16 bp):
AATTAATTTAAACTTA
Found at i:26613051 original size:41 final size:41
Alignment explanation
Indices: 26612994--26613120 Score: 137
Period size: 41 Copynumber: 3.1 Consensus size: 41
26612984 CTTCATCCTA
*
26612994 TATCAGGCCTTAAGCCTAGTAGGCTTCATGCCGGTGAATTG
1 TATCAGGCCTTGAGCCTAGTAGGCTTCATGCCGGTGAATTG
* * * *
26613035 TATCAGGCTTTGAGCCTAGCAGGTTTCATGCCGGTGTATTTG
1 TATCAGGCCTTGAGCCTAGTAGGCTTCATGCCGGTG-AATTG
* * * * * * *
26613077 TTTTAGGCCTTGAGCTTAGTAGGCTACGTACCAGTGAATTG
1 TATCAGGCCTTGAGCCTAGTAGGCTTCATGCCGGTGAATTG
26613118 TAT
1 TAT
26613121 AAGGTAAAAT
Statistics
Matches: 68, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
41 38 0.56
42 30 0.44
ACGTcount: A:0.20, C:0.19, G:0.27, T:0.34
Consensus pattern (41 bp):
TATCAGGCCTTGAGCCTAGTAGGCTTCATGCCGGTGAATTG
Found at i:26615833 original size:20 final size:20
Alignment explanation
Indices: 26615801--26615863 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
26615791 GTCCTATTCA
*
26615801 CACTATGGTGCCCCTGTTTG
1 CACTTTGGTGCCCCTGTTTG
*
26615821 CACATTT-GTGCCCCTGTCTG
1 CAC-TTTGGTGCCCCTGTTTG
26615841 CACTTTGGTGCCCCTGTTATG
1 CACTTTGGTGCCCCTGTT-TG
26615862 CA
1 CA
26615864 TCTATGATGC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 3 0.08
20 28 0.76
21 6 0.16
ACGTcount: A:0.11, C:0.32, G:0.22, T:0.35
Consensus pattern (20 bp):
CACTTTGGTGCCCCTGTTTG
Found at i:26628436 original size:14 final size:14
Alignment explanation
Indices: 26628417--26628443 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26628407 AAGGATTATT
26628417 TCATAAAAGGTTAA
1 TCATAAAAGGTTAA
26628431 TCATAAAAGGTTA
1 TCATAAAAGGTTA
26628444 TGTCGAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (14 bp):
TCATAAAAGGTTAA
Found at i:26636029 original size:25 final size:25
Alignment explanation
Indices: 26636013--26636079 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
26636003 CTGTAGATCG
26636013 GTATGCTCTCATGAGCTATAAATTA
1 GTATGCTCTCATGAGCTATAAATTA
* *
26636038 ATATGCTCTTATGAGCTATAAATTA
1 GTATGCTCTCATGAGCTATAAATTA
*
26636063 GTATGCTCTCACGAGCT
1 GTATGCTCTCATGAGCT
26636080 GTGGAGTATC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (25 bp):
GTATGCTCTCATGAGCTATAAATTA
Found at i:26646161 original size:41 final size:41
Alignment explanation
Indices: 26646084--26646242 Score: 124
Period size: 41 Copynumber: 3.9 Consensus size: 41
26646074 GTATAAGGTT
* * * * *
26646084 TTGAGTCC-AGCAGACTTTGTGTCGATGAATTATATCAGGCT
1 TTGAG-CCTAGCAGGCTTCGTGCCGATGAATTGTATCAGGCA
* * * * * *
26646125 TTAAGCCTAGTAGGCTTCGTGTCGGTGTATTGTATCAGGCC
1 TTGAGCCTAGCAGGCTTCGTGCCGATGAATTGTATCAGGCA
* * * * *
26646166 CTGAGCCTAGCAAGTTTCGTGCC-AGTGTATTTGTTTCAGGCA
1 TTGAGCCTAGCAGGCTTCGTGCCGA-TG-AATTGTATCAGGCA
*
26646208 TTGAGCCTAGCAGGCTACGTGCCGATGAATTGTAT
1 TTGAGCCTAGCAGGCTTCGTGCCGATGAATTGTAT
26646243 AAGGTAAAAT
Statistics
Matches: 89, Mismatches: 25, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
40 2 0.02
41 55 0.62
42 31 0.35
43 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (41 bp):
TTGAGCCTAGCAGGCTTCGTGCCGATGAATTGTATCAGGCA
Found at i:26646216 original size:42 final size:41
Alignment explanation
Indices: 26646140--26646219 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 41
26646130 CCTAGTAGGC
* * *
26646140 TTCGTGTCGGTGTATTGTATCAGGCCCTGAGCCTAGCAAGT
1 TTCGTGCCAGTGTATTGTATCAGGCACTGAGCCTAGCAAGT
* *
26646181 TTCGTGCCAGTGTATTTGTTTCAGGCATTGAGCCTAGCA
1 TTCGTGCCAGTGTA-TTGTATCAGGCACTGAGCCTAGCA
26646220 GGCTACGTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
41 12 0.36
42 21 0.64
ACGTcount: A:0.17, C:0.21, G:0.28, T:0.34
Consensus pattern (41 bp):
TTCGTGCCAGTGTATTGTATCAGGCACTGAGCCTAGCAAGT
Found at i:26647386 original size:18 final size:19
Alignment explanation
Indices: 26647349--26647386 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
26647339 TGACTCTTGC
* *
26647349 TTCCCAAATTTTCATGTTT
1 TTCCAAAATTTTCATATTT
26647368 TTCCAAAATTTTC-TATTT
1 TTCCAAAATTTTCATATTT
26647386 T
1 T
26647387 GCTTCAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.24, C:0.18, G:0.03, T:0.55
Consensus pattern (19 bp):
TTCCAAAATTTTCATATTT
Found at i:26648703 original size:15 final size:13
Alignment explanation
Indices: 26648674--26648712 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 13
26648664 TTGTTTCACT
26648674 GAAAATGATTTTA
1 GAAAATGATTTTA
26648687 GAAAAATGATCTTTA
1 G-AAAATGAT-TTTA
26648702 GAAAATGATTT
1 GAAAATGATTT
26648713 ACTTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 3 0.12
14 16 0.67
15 5 0.21
ACGTcount: A:0.46, C:0.03, G:0.15, T:0.36
Consensus pattern (13 bp):
GAAAATGATTTTA
Found at i:26662195 original size:27 final size:27
Alignment explanation
Indices: 26662164--26662341 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26662154 TAAATTGTAC
26662164 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26662191 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26662217 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26662245 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26662273 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26662300 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26662327 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26662342 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26662278 original size:82 final size:81
Alignment explanation
Indices: 26662165--26662320 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26662155 AAATTGTACA
* *
26662165 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26662229 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26662246 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26662311 TGCGAGTTGA
65 TGCGAATTGA
26662321 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26662332 original size:82 final size:81
Alignment explanation
Indices: 26662161--26662341 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26662151 GATTAAATTG
* *
26662161 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26662226 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26662242 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26662306 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26662324 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26662342 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26665782 original size:63 final size:62
Alignment explanation
Indices: 26665683--26665855 Score: 168
Period size: 63 Copynumber: 2.7 Consensus size: 62
26665673 TCGGTTTAGT
* * * * **
26665683 GAATGATTGCACGTGCT-ATGGTGCTTATGGAAAATAAACTGGTTTTGTATGTGTTGGTGAAAG
1 GAATGATTGCATGTGTTGA-GGTGCTTGT-GAAAATAAACTGGTGTTGTATGTGTTAATGAAAG
* * *
26665746 GAATGATTGCATGTGTTGAGGTGCTTGTAGAAAATAAATTGGTGTTGTATGTGTTAATGCAGG
1 GAATGATTGCATGTGTTGAGGTGCTTGT-GAAAATAAACTGGTGTTGTATGTGTTAATGAAAG
* * * * * *
26665809 GAATGGTTACGTATGTTGTGGTGCTTGTGAAAAATAAACTGGAGTTG
1 GAATGATTGCATGTGTTGAGGTGCTTGTG-AAAATAAACTGGTGTTG
26665856 AAGGTGTAGA
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
62 1 0.01
63 89 0.98
64 1 0.01
ACGTcount: A:0.27, C:0.06, G:0.31, T:0.35
Consensus pattern (62 bp):
GAATGATTGCATGTGTTGAGGTGCTTGTGAAAATAAACTGGTGTTGTATGTGTTAATGAAAG
Found at i:26667042 original size:221 final size:221
Alignment explanation
Indices: 26666659--26667102 Score: 861
Period size: 221 Copynumber: 2.0 Consensus size: 221
26666649 CCCTCAGAGA
26666659 CTGGTTTACTATAAACTGTTGCTCGCTTGACCAGATTTATGTCGGGGCAGCTGTCGTGCCCAAGA
1 CTGGTTTACTATAAACTGTTGCTCGCTTGACCAGATTTATGTCGGGGCAGCTGTCGTGCCCAAGA
26666724 AAATCAGGGGGATAAAAATTTGAAAACCTGAAATTAACAGAAAAATAACGTCAAAAGTAAAAGTT
66 AAATCAGGGGGATAAAAATTTGAAAACCTGAAATTAACAGAAAAATAACGTCAAAAGTAAAAGTT
* *
26666789 GAAAATAGTCTTGGGCAATGACAGCTGCCCTGACATAAATCTGGTCAAGCGAGCAACAGTTTACA
131 GAAAATAGTCTTGGGCAATGACAGATGCCCTGACATAAATATGGTCAAGCGAGCAACAGTTTACA
26666854 GTAAACCAGTCTCTGAGGGATCGACC
196 GTAAACCAGTCTCTGAGGGATCGACC
26666880 CTGGTTTACTATAAACTGTTGCTCGCTTGACCAGATTTATGTCGGGGCAGCTGTCGTGCCCAAGA
1 CTGGTTTACTATAAACTGTTGCTCGCTTGACCAGATTTATGTCGGGGCAGCTGTCGTGCCCAAGA
26666945 AAATCAGGGGGATAAAAATTTGAAAACCTGAAATTAACAGAAAAATAACGTCAAAAGTAAAAGTT
66 AAATCAGGGGGATAAAAATTTGAAAACCTGAAATTAACAGAAAAATAACGTCAAAAGTAAAAGTT
*
26667010 GAAAATAGTCTTGGGCAATGACAGATGCCCTGACATAAATATGGTCAAGCGAGCAACAGTTTATA
131 GAAAATAGTCTTGGGCAATGACAGATGCCCTGACATAAATATGGTCAAGCGAGCAACAGTTTACA
26667075 GTAAACCAGTCTCTGAGGGATCGACC
196 GTAAACCAGTCTCTGAGGGATCGACC
26667101 CT
1 CT
26667103 ACTCCCTATA
Statistics
Matches: 220, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
221 220 1.00
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (221 bp):
CTGGTTTACTATAAACTGTTGCTCGCTTGACCAGATTTATGTCGGGGCAGCTGTCGTGCCCAAGA
AAATCAGGGGGATAAAAATTTGAAAACCTGAAATTAACAGAAAAATAACGTCAAAAGTAAAAGTT
GAAAATAGTCTTGGGCAATGACAGATGCCCTGACATAAATATGGTCAAGCGAGCAACAGTTTACA
GTAAACCAGTCTCTGAGGGATCGACC
Found at i:26669394 original size:19 final size:19
Alignment explanation
Indices: 26669365--26669424 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
26669355 AAAAAAAAAC
* *
26669365 ATTTTAATTTTCCTATTATT
1 ATTTTATTTTTACTATT-TT
26669385 A-TTTATTTTTACTATTTT
1 ATTTTATTTTTACTATTTT
*
26669403 ATTTTATTTTCA-T-TTTT
1 ATTTTATTTTTACTATTTT
26669420 ATTTT
1 ATTTT
26669425 TGCAGGAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 9 0.25
18 4 0.11
19 22 0.61
20 1 0.03
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.72
Consensus pattern (19 bp):
ATTTTATTTTTACTATTTT
Found at i:26669404 original size:18 final size:20
Alignment explanation
Indices: 26669365--26669412 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
26669355 AAAAAAAAAC
* *
26669365 ATTTTAATTTTCCTATTATT
1 ATTTTATTTTTACTATTATT
26669385 A-TTTATTTTTACTATT-TT
1 ATTTTATTTTTACTATTATT
26669403 ATTTTATTTT
1 ATTTTATTTT
26669413 CATTTTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 3 0.12
19 21 0.84
20 1 0.04
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (20 bp):
ATTTTATTTTTACTATTATT
Found at i:26672050 original size:6 final size:6
Alignment explanation
Indices: 26672039--26672063 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
26672029 ATCAGAGGAG
26672039 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
26672064 CTTATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:26678824 original size:22 final size:21
Alignment explanation
Indices: 26678786--26678828 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
26678776 AAATGAAAAT
*
26678786 AAAATAAAATAGTAAAATTAA
1 AAAATAAAATAGGAAAATTAA
26678807 AAAATAATAATAGGAAAATTAA
1 AAAATAA-AATAGGAAAATTAA
26678829 TTTTTTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (21 bp):
AAAATAAAATAGGAAAATTAA
Found at i:26684664 original size:6 final size:6
Alignment explanation
Indices: 26684616--26684666 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
26684606 TTAATTTTCC
* *
26684616 TATTAT TATTATT TATTTT TACTATTT TA-TTT TATTTT CATTTT TATTTT
1 TATTTT TATT-TT TATTTT TA-T-TTT TATTTT TATTTT TATTTT TATTTT
26684666 T
1 T
26684667 GCAGGAAACA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
5 5 0.13
6 22 0.58
7 6 0.16
8 5 0.13
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.75
Consensus pattern (6 bp):
TATTTT
Found at i:26688666 original size:43 final size:43
Alignment explanation
Indices: 26688640--26688729 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
26688630 CTAATTCTAT
*
26688640 ACGTCATAGTGAGATTATTGTCATTT-GTCAACCTACAAATCAG
1 ACGTCATAGTGAGATTATTGTCATTTGGGCAACCTA-AAATCAG
*
26688683 ACGTCATAGTGAGATTATTGTCATTT-GTCAACCTACAAATCAG
1 ACGTCATAGTGAGATTATTGTCATTTGGGCAACCTA-AAATCAG
26688726 ACGT
1 ACGT
26688730 GTACTAATTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (43 bp):
ACGTCATAGTGAGATTATTGTCATTTGGGCAACCTAAAATCAG
Found at i:26690279 original size:6 final size:6
Alignment explanation
Indices: 26690270--26690305 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
26690260 TTTAAGTTGT
* *
26690270 TGGTGA TGGTGA TGGCGA TGGTGA TGGTAA TGGTGA
1 TGGTGA TGGTGA TGGTGA TGGTGA TGGTGA TGGTGA
26690306 GAGTTAGGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.19, C:0.03, G:0.47, T:0.31
Consensus pattern (6 bp):
TGGTGA
Found at i:26704545 original size:14 final size:15
Alignment explanation
Indices: 26704520--26704548 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26704510 ATTTTGTTTG
26704520 TTTATGATGTGTGAA
1 TTTATGATGTGTGAA
26704535 TTTAT-ATGTGTGAA
1 TTTATGATGTGTGAA
26704549 GGTTTCATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (15 bp):
TTTATGATGTGTGAA
Found at i:26705171 original size:28 final size:28
Alignment explanation
Indices: 26705139--26705241 Score: 152
Period size: 28 Copynumber: 3.7 Consensus size: 28
26705129 TGACTTTCGA
26705139 CACTAAGTGTGCGAGTTTAATTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
26705167 CACTAAGTGTGCGAGTTTAATGGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* * * *
26705195 CACTAAGTGTGCGATTTTGATTATTAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
26705223 CACTAAGTGTGCGAATTTA
1 CACTAAGTGTGCGAGTTTA
26705242 TTAAATATTT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:26707872 original size:13 final size:13
Alignment explanation
Indices: 26707854--26707878 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26707844 TTGTAGTTTG
26707854 GGGAAATAATTAT
1 GGGAAATAATTAT
26707867 GGGAAATAATTA
1 GGGAAATAATTA
26707879 CTAATCTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.24, T:0.28
Consensus pattern (13 bp):
GGGAAATAATTAT
Found at i:26713519 original size:31 final size:31
Alignment explanation
Indices: 26713481--26713548 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
26713471 TTGTGTGTTT
26713481 AACTTGATTACAATAACCTTTATATAGACTC
1 AACTTGATTACAATAACCTTTATATAGACTC
*
26713512 AACTTGATTACAATAGCCTTTATATAGACTC
1 AACTTGATTACAATAACCTTTATATAGACTC
26713543 AACTTG
1 AACTTG
26713549 GAAGTCCTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (31 bp):
AACTTGATTACAATAACCTTTATATAGACTC
Found at i:26726513 original size:20 final size:20
Alignment explanation
Indices: 26726481--26726558 Score: 97
Period size: 20 Copynumber: 3.9 Consensus size: 20
26726471 TTGTATGGGA
26726481 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
*
26726501 TTGCA-TTTCGGTGCCTCTGG
1 TTGCACTTT-GGTGCCTCTGT
*
26726521 TTGCACTTTGGTGCTTCTGT
1 TTGCACTTTGGTGCCTCTGT
*
26726541 TTAG-ACTTTGGTGTCTCT
1 TT-GCACTTTGGTGCCTCT
26726559 ATTGGCACTA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
19 3 0.06
20 43 0.86
21 4 0.08
ACGTcount: A:0.06, C:0.22, G:0.26, T:0.46
Consensus pattern (20 bp):
TTGCACTTTGGTGCCTCTGT
Found at i:26730849 original size:43 final size:43
Alignment explanation
Indices: 26730757--26731025 Score: 229
Period size: 42 Copynumber: 6.3 Consensus size: 43
26730747 TTACAGAAAT
* * * *
26730757 AAACGCCGTTAAAGGTCATGTTCTTTAGCGGCACTTCCTCAA-
1 AAACGCCGCTAAAGGTAATGTTCTTTAGCGGCGCTTTCTCAAC
* * * *
26730799 AAACGCCGCTAAGGGTAATATTCTTTAGTGGCGCTTTCACAAC
1 AAACGCCGCTAAAGGTAATGTTCTTTAGCGGCGCTTTCTCAAC
* ** * * *
26730842 AAACGCCGCTAAA-GAACATGACCTTTAGCGGCGCATAC-CAAG
1 AAACGCCGCTAAAGGTA-ATGTTCTTTAGCGGCGCTTTCTCAAC
* * * *
26730884 AAACGCCGCTAAAGCTCATGTTCTTTAGAGGCGCTTTCTCCAC
1 AAACGCCGCTAAAGGTAATGTTCTTTAGCGGCGCTTTCTCAAC
* * ** * *
26730927 AAACGCCGCTAAAAGTAATGTTCTTTAACGGCATTTTTTTCCAC
1 AAACGCCGCTAAAGGTAATGTTCTTTAGCGGC-GCTTTCTCAAC
* * * * *
26730971 AAACGCTGCTAAAGGTCATGTTCTTTAGCGGCGATTTTTTCCAC
1 AAACGCCGCTAAAGGTAATGTTCTTTAGCGGCG-CTTTCTCAAC
26731015 AAACGCCGCTA
1 AAACGCCGCTA
26731026 TAGAATATGA
Statistics
Matches: 180, Mismatches: 41, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
42 68 0.38
43 56 0.31
44 56 0.31
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTAATGTTCTTTAGCGGCGCTTTCTCAAC
Found at i:26730855 original size:85 final size:85
Alignment explanation
Indices: 26730757--26730959 Score: 228
Period size: 85 Copynumber: 2.4 Consensus size: 85
26730747 TTACAGAAAT
* * * * *
26730757 AAACGCCGTTAAAGGTCATGTTCTTTAGCGGCACTTCCTCAA-AAACGCCGCTAAGGGTAATATT
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCACATAC-CAAGAAACGCCGCTAAAGCTAATATT
*
26730821 CTTTAGTGGCGCTTTCACAAC
65 CTTTAGAGGCGCTTTCACAAC
** ** * * *
26730842 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCATACCAAGAAACGCCGCTAAAGCTCATGTTC
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCACATACCAAGAAACGCCGCTAAAGCTAATATTC
* *
26730907 TTTAGAGGCGCTTTCTCCAC
66 TTTAGAGGCGCTTTCACAAC
* * *
26730927 AAACGCCGCTAAAAGTAATGTTCTTTAACGGCA
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCA
26730960 TTTTTTTCCA
Statistics
Matches: 94, Mismatches: 23, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
84 3 0.03
85 91 0.97
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.25
Consensus pattern (85 bp):
AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCACATACCAAGAAACGCCGCTAAAGCTAATATTC
TTTAGAGGCGCTTTCACAAC
Found at i:26730982 original size:44 final size:44
Alignment explanation
Indices: 26730884--26731025 Score: 166
Period size: 44 Copynumber: 3.2 Consensus size: 44
26730874 GCATACCAAG
* * *
26730884 AAACGCCGCT-AAAGCTCATGTTCTTTAGA-GGCG-CTTTCTCCAC
1 AAACGCCGCTAAAAG-TAATGTTCTTTA-ACGGCGATTTTTTCCAC
26730927 AAACGCCGCTAAAAGTAATGTTCTTTAACGGC-ATTTTTTTCCAC
1 AAACGCCGCTAAAAGTAATGTTCTTTAACGGCGA-TTTTTTCCAC
* * * *
26730971 AAACGCTGCTAAAGGTCATGTTCTTTAGCGGCGATTTTTTCCAC
1 AAACGCCGCTAAAAGTAATGTTCTTTAACGGCGATTTTTTCCAC
26731015 AAACGCCGCTA
1 AAACGCCGCTA
26731026 TAGAATATGA
Statistics
Matches: 86, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
42 1 0.01
43 24 0.28
44 60 0.70
45 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (44 bp):
AAACGCCGCTAAAAGTAATGTTCTTTAACGGCGATTTTTTCCAC
Found at i:26731439 original size:21 final size:21
Alignment explanation
Indices: 26731415--26731465 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
26731405 TTCTTTTGAA
*
26731415 CCTCTGCTTCTCTCACTGCAG
1 CCTCTGCTTCCCTCACTGCAG
* *
26731436 CCTCTGCTTCCCTCGCTGCCG
1 CCTCTGCTTCCCTCACTGCAG
26731457 CCTCTGCTT
1 CCTCTGCTT
26731466 TAAGTTGTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.04, C:0.47, G:0.16, T:0.33
Consensus pattern (21 bp):
CCTCTGCTTCCCTCACTGCAG
Found at i:26736759 original size:9 final size:9
Alignment explanation
Indices: 26736745--26737049 Score: 159
Period size: 9 Copynumber: 35.4 Consensus size: 9
26736735 AGTATATATG
26736745 AGTTATGTA
1 AGTTATGTA
26736754 AGTTATGATA
1 AGTTATG-TA
* * *
26736764 TGATATAT-
1 AGTTATGTA
*
26736772 ATTTATGT-
1 AGTTATGTA
*
26736780 A-TTACGTA
1 AGTTATGTA
*
26736788 AATTATGTA
1 AGTTATGTA
26736797 AGTTATGTA
1 AGTTATGTA
* *
26736806 AGTAATAT-
1 AGTTATGTA
26736814 A-TTATGTA
1 AGTTATGTA
26736822 AGTTATGT-
1 AGTTATGTA
*
26736830 A-TTGTGTA
1 AGTTATGTA
*
26736838 TGTTATGTA
1 AGTTATGTA
*
26736847 AGTTGTGTATA
1 AGTTATG--TA
*
26736858 ATGTAAT-TA
1 A-GTTATGTA
26736867 AGTTATGTA
1 AGTTATGTA
26736876 AG-T-TGTA
1 AGTTATGTA
26736883 AGTTATGTA
1 AGTTATGTA
26736892 AGTTATGTATA
1 AGTTATG--TA
*
26736903 ATATTAATGTA
1 A-GTT-ATGTA
26736914 AGTTATGT-
1 AGTTATGTA
26736922 A-TTATGTA
1 AGTTATGTA
*
26736930 AGTTATTTA
1 AGTTATGTA
26736939 AGTTATGTA
1 AGTTATGTA
*
26736948 AGTTGTGT-
1 AGTTATGTA
*
26736956 A-TTATGTG
1 AGTTATGTA
*
26736964 AGTTATGCA
1 AGTTATGTA
*
26736973 ATTTATGTA
1 AGTTATGTA
* * *
26736982 GGCTATAT-
1 AGTTATGTA
26736990 A-TTATGTA
1 AGTTATGTA
26736998 AGTTAT-TA
1 AGTTATGTA
*
26737006 TGTTAT-TA
1 AGTTATGTA
* * *
26737014 TG-TAAGTT
1 AGTTATGTA
26737022 A-TTATGTA
1 AGTTATGTA
26737030 AGTTATGT-
1 AGTTATGTA
26737038 A-TTATGTA
1 AGTTATGTA
26737046 AGTT
1 AGTT
26737050 TATATATAAG
Statistics
Matches: 223, Mismatches: 45, Indels: 56
0.69 0.14 0.17
Matches are distributed among these distances:
7 43 0.19
8 39 0.17
9 116 0.52
10 8 0.04
11 9 0.04
12 5 0.02
13 3 0.01
ACGTcount: A:0.33, C:0.01, G:0.19, T:0.48
Consensus pattern (9 bp):
AGTTATGTA
Found at i:26736805 original size:25 final size:24
Alignment explanation
Indices: 26736774--26736970 Score: 119
Period size: 25 Copynumber: 8.2 Consensus size: 24
26736764 TGATATATAT
*
26736774 TTATGTATTACGTAAATTATGTAAG
1 TTATGTATTA-GTATATTATGTAAG
* *
26736799 TTATGTAAGTAATATATTATGTAAG
1 TTATGT-ATTAGTATATTATGTAAG
* *
26736824 TTATGTATTGTGTATGTTATGTAAG
1 TTATGTATT-AGTATATTATGTAAG
* * *
26736849 TTGTGTA-TA--ATGTAAT-TAAG
1 TTATGTATTAGTATATTATGTAAG
26736869 TTATGTAAGTT-GTA-AGTTATGTAAG
1 TTATGT-A-TTAGTATA-TTATGTAAG
26736894 TTATGTA-TA--ATATTAATGTAAG
1 TTATGTATTAGTATATT-ATGTAAG
*
26736916 TTATGTATTATGTA-AGTTATTTAAG
1 TTATGTATTA-GTATA-TTATGTAAG
* *
26736941 TTATGTAAGTT-GTGTATTATGTGAG
1 TTATGT-A-TTAGTATATTATGTAAG
26736966 TTATG
1 TTATG
26736971 CAATTTATGT
Statistics
Matches: 135, Mismatches: 17, Indels: 40
0.70 0.09 0.21
Matches are distributed among these distances:
20 9 0.07
21 10 0.07
22 16 0.12
23 3 0.02
24 8 0.06
25 79 0.59
26 8 0.06
27 2 0.01
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (24 bp):
TTATGTATTAGTATATTATGTAAG
Found at i:26736832 original size:16 final size:16
Alignment explanation
Indices: 26736747--26737049 Score: 166
Period size: 16 Copynumber: 18.7 Consensus size: 16
26736737 TATATATGAG
26736747 TTATGTAAGTTATGATA
1 TTATGTAAGTTATG-TA
* * *
26736764 TGATATATATTTATGTA
1 TTATGTA-AGTTATGTA
* *
26736781 TTACGTAAATTATGTAA
1 TTATGTAAGTTATGT-A
* *
26736798 GTTATGTAAGTAATATA
1 -TTATGTAAGTTATGTA
26736815 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
* *
26736831 TTGTGTATGTTATGTAA
1 TTATGTAAGTTATGT-A
* *
26736848 GTTGTGT-A-TAATGTA
1 -TTATGTAAGTTATGTA
26736863 --AT-TAAGTTATGTAA
1 TTATGTAAGTTATGT-A
*
26736877 GT-TGTAAGTTATGTAA
1 TTATGTAAGTTATGT-A
*
26736893 GTTATGT-A--TA-ATA
1 -TTATGTAAGTTATGTA
26736906 TTAATGTAAGTTATGTA
1 TT-ATGTAAGTTATGTA
*
26736923 TTATGTAAGTTATTTAA
1 TTATGTAAGTTATGT-A
*
26736940 GTTATGTAAGTTGTGTA
1 -TTATGTAAGTTATGTA
* *
26736957 TTATGTGAGTTATGCAA
1 TTATGTAAGTTATG-TA
* * *
26736974 TTTATGTAGGCTATATA
1 -TTATGTAAGTTATGTA
26736991 TTATGTAAGTTATTATGTTA
1 TTATGTAAG---TTATG-TA
26737011 TTATGTAAG---T-TA
1 TTATGTAAGTTATGTA
26737023 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
26737039 TTATGTAAGTT
1 TTATGTAAGTT
26737050 TATATATAAG
Statistics
Matches: 220, Mismatches: 36, Indels: 61
0.69 0.11 0.19
Matches are distributed among these distances:
11 1 0.00
12 15 0.07
13 10 0.05
14 4 0.02
15 5 0.02
16 98 0.45
17 24 0.11
18 49 0.22
19 3 0.01
20 11 0.05
ACGTcount: A:0.33, C:0.01, G:0.18, T:0.48
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:26736979 original size:34 final size:34
Alignment explanation
Indices: 26736840--26737049 Score: 147
Period size: 34 Copynumber: 6.3 Consensus size: 34
26736830 ATTGTGTATG
* *
26736840 TTATGTAAGTTGTGTATAATGT-A---AT-TAAG
1 TTATGTAAGTTGTGTATTATGTAAGTTATGTAAT
*
26736869 TTATGTAAGTTGT-AAGTTATGTAAGTTATGTATAAT
1 TTATGTAAGTTGTGTA-TTATGTAAGTTATG--TAAT
* * *
26736905 ATTAATGTAAGTTATGTATTATGTAAGTTATTTAAG
1 -TT-ATGTAAGTTGTGTATTATGTAAGTTATGTAAT
* *
26736941 TTATGTAAGTTGTGTATTATGTGAGTTATGCAAT
1 TTATGTAAGTTGTGTATTATGTAAGTTATGTAAT
* * * *
26736975 TTATGTAGGCTATATATTATGTAAGTTAT-T-AT
1 TTATGTAAGTTGTGTATTATGTAAGTTATGTAAT
* *
26737007 GTTAT-TATGTAAGT-TATTATGTAAGTTATGT-A-
1 -TTATGTAAGT-TGTGTATTATGTAAGTTATGTAAT
26737039 TTATGTAAGTT
1 TTATGTAAGTT
26737050 TATATATAAG
Statistics
Matches: 142, Mismatches: 24, Indels: 28
0.73 0.12 0.14
Matches are distributed among these distances:
28 1 0.01
29 18 0.13
30 1 0.01
31 4 0.03
32 24 0.17
33 9 0.06
34 51 0.36
35 2 0.01
36 6 0.04
37 2 0.01
38 23 0.16
39 1 0.01
ACGTcount: A:0.32, C:0.01, G:0.19, T:0.48
Consensus pattern (34 bp):
TTATGTAAGTTGTGTATTATGTAAGTTATGTAAT
Found at i:26737006 original size:12 final size:12
Alignment explanation
Indices: 26736989--26737035 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
26736979 GTAGGCTATA
26736989 TATTATGTAAGT
1 TATTATGTAAGT
26737001 TATTA--T--GT
1 TATTATGTAAGT
26737009 TATTATGTAAGT
1 TATTATGTAAGT
26737021 TATTATGTAAGT
1 TATTATGTAAGT
26737033 TAT
1 TAT
26737036 GTATTATGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
8 7 0.23
10 2 0.06
12 22 0.71
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (12 bp):
TATTATGTAAGT
Found at i:26737014 original size:20 final size:20
Alignment explanation
Indices: 26736989--26737038 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
26736979 GTAGGCTATA
26736989 TATTATGTAAGTTATTATGT
1 TATTATGTAAGTTATTATGT
26737009 TATTATGTAAGTTATTATGT
1 TATTATGTAAGTTATTATGT
*
26737029 AAGTTATGTA
1 TA-TTATGTA
26737039 TTATGTAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (20 bp):
TATTATGTAAGTTATTATGT
Found at i:26737046 original size:28 final size:29
Alignment explanation
Indices: 26736989--26737064 Score: 93
Period size: 28 Copynumber: 2.6 Consensus size: 29
26736979 GTAGGCTATA
26736989 TATTATGTAAGTTATTATGTTATTATGTAAGT
1 TATTATGTAAG---TTATGTTATTATGTAAGT
26737021 TATTATGTAAGTTATG-TATTATGTAAGT
1 TATTATGTAAGTTATGTTATTATGTAAGT
*
26737049 T-TATATATAAGTTATG
1 TAT-TATGTAAGTTATG
26737065 ATATGATTGA
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
27 1 0.02
28 25 0.60
29 5 0.12
32 11 0.26
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (29 bp):
TATTATGTAAGTTATGTTATTATGTAAGT
Found at i:26737924 original size:26 final size:26
Alignment explanation
Indices: 26737891--26737950 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
26737881 TATTACAATT
*
26737891 TAATTATTTTATAAGCTATAGAGTAA
1 TAATTATTTGATAAGCTATAGAGTAA
26737917 TAATTATTTGATAAGCTATAGAGTAA
1 TAATTATTTGATAAGCTATAGAGTAA
*
26737943 GAATTATT
1 TAATTATT
26737951 ATGCAACGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (26 bp):
TAATTATTTGATAAGCTATAGAGTAA
Found at i:26738558 original size:24 final size:24
Alignment explanation
Indices: 26738526--26738579 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
26738516 TTTAGATTTG
26738526 GGGGAATTTT-AGGGAAAAATTAGA
1 GGGGAATTTTGA-GGAAAAATTAGA
* *
26738550 GGGGAATTTTGAGGAAAATTTTGA
1 GGGGAATTTTGAGGAAAAATTAGA
26738574 GGGGAA
1 GGGGAA
26738580 AAATGAGCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 26 0.96
25 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.37, T:0.26
Consensus pattern (24 bp):
GGGGAATTTTGAGGAAAAATTAGA
Found at i:26739130 original size:20 final size:20
Alignment explanation
Indices: 26739093--26739130 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26739083 AGTAATGCAT
* *
26739093 TTTTAAAAAATAATTACACA
1 TTTTAAAAAACAAATACACA
26739113 TTTTAAAAAACAAATACA
1 TTTTAAAAAACAAATACA
26739131 TCAATATATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.58, C:0.11, G:0.00, T:0.32
Consensus pattern (20 bp):
TTTTAAAAAACAAATACACA
Found at i:26739533 original size:14 final size:14
Alignment explanation
Indices: 26739494--26739549 Score: 51
Period size: 14 Copynumber: 4.0 Consensus size: 14
26739484 GCCCTAACTG
*
26739494 TAAATCTTAAACCC
1 TAAATCTCAAACCC
*
26739508 TAAAT-TATAAACCC
1 TAAATCT-CAAACCC
26739522 TAAATCTCAAACCC
1 TAAATCTCAAACCC
* * *
26739536 CAAACCCCAAACCC
1 TAAATCTCAAACCC
26739550 CAAACCATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
13 1 0.03
14 34 0.94
15 1 0.03
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAATCTCAAACCC
Found at i:26739550 original size:14 final size:14
Alignment explanation
Indices: 26739529--26739555 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26739519 CCCTAAATCT
26739529 CAAACCCCAAACCC
1 CAAACCCCAAACCC
26739543 CAAACCCCAAACC
1 CAAACCCCAAACC
26739556 ATAAATCATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.56, G:0.00, T:0.00
Consensus pattern (14 bp):
CAAACCCCAAACCC
Found at i:26739679 original size:21 final size:22
Alignment explanation
Indices: 26739650--26739698 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
26739640 ACATTAACTG
*
26739650 TAAATATTAAACCC-TAAACCA
1 TAAACATTAAACCCGTAAACCA
*
26739671 TAAACATTAAACCCGTAAATCA
1 TAAACATTAAACCCGTAAACCA
*
26739693 CAAACA
1 TAAACA
26739699 ACAACCACCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.53, C:0.24, G:0.02, T:0.20
Consensus pattern (22 bp):
TAAACATTAAACCCGTAAACCA
Done.