Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47983841
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 869652 characters in sequence are not A, C, G, or T
File 85 of 153
Found at i:26934034 original size:15 final size:16
Alignment explanation
Indices: 26934016--26934053 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
26934006 TCAAAAAAGG
26934016 AAAGAAAA-AAAACAA
1 AAAGAAAACAAAACAA
*
26934031 AAAGAAAACAAAAGAA
1 AAAGAAAACAAAACAA
26934047 AAAGAAA
1 AAAGAAA
26934054 GAGGAGAACG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.84, C:0.05, G:0.11, T:0.00
Consensus pattern (16 bp):
AAAGAAAACAAAACAA
Found at i:26943883 original size:18 final size:18
Alignment explanation
Indices: 26943860--26943896 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
26943850 AATGGGAGGG
26943860 ACCGTATGTGGTGAAGAA
1 ACCGTATGTGGTGAAGAA
26943878 ACCGTATGTGGTGAAGAA
1 ACCGTATGTGGTGAAGAA
26943896 A
1 A
26943897 GCTTTCTCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.11, G:0.32, T:0.22
Consensus pattern (18 bp):
ACCGTATGTGGTGAAGAA
Found at i:26945221 original size:15 final size:16
Alignment explanation
Indices: 26945201--26945234 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
26945191 TTCCTAAATA
26945201 AAAAAAAAACAA-AAC
1 AAAAAAAAACAACAAC
26945216 AAAAAAAAACAACAAC
1 AAAAAAAAACAACAAC
26945232 AAA
1 AAA
26945235 GAAAGAGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAAAAAACAACAAC
Found at i:26945243 original size:2 final size:2
Alignment explanation
Indices: 26945238--26945271 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
26945228 CAACAAAGAA
* *
26945238 AG AG AG AG AC AG AA AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
26945272 CAGGAGAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.03, G:0.44, T:0.00
Consensus pattern (2 bp):
AG
Found at i:26945253 original size:14 final size:14
Alignment explanation
Indices: 26945234--26945271 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
26945224 ACAACAACAA
26945234 AGAAAGAGAGAGAC
1 AGAAAGAGAGAGAC
*
26945248 AGAAAGAGAGAGAG
1 AGAAAGAGAGAGAC
*
26945262 AGAGAGAGAG
1 AGAAAGAGAG
26945272 CAGGAGAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.55, C:0.03, G:0.42, T:0.00
Consensus pattern (14 bp):
AGAAAGAGAGAGAC
Found at i:26945727 original size:42 final size:42
Alignment explanation
Indices: 26945673--26945840 Score: 237
Period size: 42 Copynumber: 4.0 Consensus size: 42
26945663 GCATTGATTA
*
26945673 CATTTAGAGGCCCAAATGTGGAGGTCCACTTACTTTTCATTG
1 CATTTAGAGGCCCAGATGTGGAGGTCCACTTACTTTTCATTG
* * * *
26945715 TATTTAGAGGCCCAGGTGTAGAGGTCCATTTACTTTTCATTG
1 CATTTAGAGGCCCAGATGTGGAGGTCCACTTACTTTTCATTG
* * *
26945757 CATTTAAAGGCCCAGGTGTGGAGGTCCACTTACCTTTCATTG
1 CATTTAGAGGCCCAGATGTGGAGGTCCACTTACTTTTCATTG
* * *
26945799 CATTTAGAAGCCCAGATGTGGAGGTCCATTTACTTTTAATTG
1 CATTTAGAGGCCCAGATGTGGAGGTCCACTTACTTTTCATTG
26945841 TAGTGTATAT
Statistics
Matches: 110, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 110 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.35
Consensus pattern (42 bp):
CATTTAGAGGCCCAGATGTGGAGGTCCACTTACTTTTCATTG
Found at i:26946302 original size:3 final size:3
Alignment explanation
Indices: 26946294--26946369 Score: 62
Period size: 3 Copynumber: 25.0 Consensus size: 3
26946284 AAAGGCCCAA
* * * * * * *
26946294 ATT ATT ATT ATT ATT ATC ATT ACT ACT ACT ACT ACT ACT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
26946342 ATT ATT ATT ATT AAAT ATC ATT ATT ATT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT
26946370 TTTTTCTTTA
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
3 62 0.97
4 2 0.03
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.54
Consensus pattern (3 bp):
ATT
Found at i:26946935 original size:146 final size:147
Alignment explanation
Indices: 26946687--26947285 Score: 816
Period size: 146 Copynumber: 4.1 Consensus size: 147
26946677 AGTTTTGATT
* *
26946687 TTTTTTTCAAAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATCTATTTCTTTAATCATTTTAA
1 TTTTTTT--AAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATATTT-TTTAGTCATTTTAA
* * * * * *
26946752 AGGAAAGGCTTACATTTTTAAAACAAAGTTTTAATCTTTTCCAACTATTTCGAAATAAAGTTTTG
63 AGGAAATGTTTAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTG
26946817 ATTTTTAAGAAAAATAGTGA
128 ATTTTTAAGAAAAATAGTGA
* *
26946837 TTTTTTTAAAAAGAGAAATTTTATATTTTTAAAAATAAAAAT-T-TGTTTTTAGTCATTTTAAAG
1 TTTTTTTAAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATAT-TTTTTAGTCATTTTAAAG
* *
26946900 GAAATGTTTAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAAGCTTTGAT
65 GAAATGTTTAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGAT
26946965 TTTTAAGAAAAATAGTGATTA
130 TTTTAAGAAAAATAGTG---A
* *
26946986 TTTTTTTTAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATAT-GTTTTTAGTCATTTTAAAGG
1 TTTTTTTAAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAAGG
* ***** * *
26947050 AAAAT-ATTAAA--TTTAAAATTTTTTTTTGATGTTTTTCAACTATTTCGAAATAAAATTTTGAT
66 -AAATGTTTAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGAT
* *
26947112 TTTTAATAAAAAGAGTGA
130 TTTTAAGAAAAATAGTGA
*
26947130 TTTTTTT-AAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAATG
1 TTTTTTTAAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAAGG
* *
26947194 AAAAGTTTAAAATTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGATT
66 AAATGTTTAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGATT
*
26947259 TTTAAGAAAAGTAGTGA
131 TTTAAGAAAAATAGTGA
*
26947276 TTTTTCTAAA
1 TTTTTTTAAA
26947286 GAAAACTTTG
Statistics
Matches: 396, Mismatches: 42, Indels: 25
0.86 0.09 0.05
Matches are distributed among these distances:
143 39 0.10
144 31 0.08
146 155 0.39
147 62 0.16
148 33 0.08
149 64 0.16
150 12 0.03
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (147 bp):
TTTTTTTAAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAAGG
AAATGTTTAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGATT
TTTAAGAAAAATAGTGA
Found at i:26947228 original size:293 final size:296
Alignment explanation
Indices: 26946697--26947277 Score: 868
Period size: 293 Copynumber: 2.0 Consensus size: 296
26946687 TTTTTTTCAA
* *
26946697 AAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATCTATTTCTTTAATCATTTTAAAGGAAAGGCT
1 AAAAGAGAAAGTTTAGATTTTTAAAAATAAAAA-CTATTTCTTTAATCATTTTAAAGGAAAAGAT
* *
26946762 TACATTTTTAAAACAAAGTTTTAATCTTTTCCAACTATTTCGAAATAAAGTTTTGATTTTTAAGA
65 TACATATTTAAAACAAAGTTTTAATCTTTTCCAACTATTTCGAAATAAAATTTTGATTTTTAAGA
* * *
26946827 AAAATAGTGATTTTTTTAAAAAGAGAAATTTTATATTTTTAAAAATAAAAATTTGTTTTTAGTCA
130 AAAAGAGTGATTTTTTTAAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATTTGTTTTTAGTCA
* *
26946892 TTTTAAAGGAAATGTTTAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAA
195 TTTTAAAGGAAAAGTTTAAAATTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAA
26946957 GCTTTGATTTTTAAGAAAAATAGTGATTATTTTTTTT
260 GCTTTGATTTTTAAGAAAAATAGTGATTATTTTTTTT
* *
26946994 AAAAGAGAAAGTTTAGATTTTTAAAAATAAAAA-TATGTT-TTTAGTCATTTTAAAGGAAAATAT
1 AAAAGAGAAAGTTTAGATTTTTAAAAATAAAAACTAT-TTCTTTAATCATTTTAAAGGAAAAGAT
***** * * * *
26947057 TA-A-ATTTAAAATTTTTTTTTGATGTTTTTCAACTATTTCGAAATAAAATTTTGATTTTTAATA
65 TACATATTTAAAACAAAGTTTTAATCTTTTCCAACTATTTCGAAATAAAATTTTGATTTTTAAGA
26947120 AAAAGAGTGATTTTTTT-AAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATAT-TTTTTAGT
130 AAAAGAGTGATTTTTTTAAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAAT-T-TGTTTTTAGT
* *
26947183 CATTTTAAATGAAAAGTTTAAAATTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAATA
193 CATTTTAAAGGAAAAGTTTAAAATTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATA
* *
26947248 AAGTTTTGATTTTTAAGAAAAGTAGTGATT
258 AAGCTTTGATTTTTAAGAAAAATAGTGATT
26947278 TTTCTAAAGA
Statistics
Matches: 257, Mismatches: 24, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
292 32 0.12
293 163 0.63
294 2 0.01
295 25 0.10
296 2 0.01
297 33 0.13
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.43
Consensus pattern (296 bp):
AAAAGAGAAAGTTTAGATTTTTAAAAATAAAAACTATTTCTTTAATCATTTTAAAGGAAAAGATT
ACATATTTAAAACAAAGTTTTAATCTTTTCCAACTATTTCGAAATAAAATTTTGATTTTTAAGAA
AAAGAGTGATTTTTTTAAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATTTGTTTTTAGTCAT
TTTAAAGGAAAAGTTTAAAATTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAAG
CTTTGATTTTTAAGAAAAATAGTGATTATTTTTTTT
Found at i:26948021 original size:147 final size:146
Alignment explanation
Indices: 26947477--26947991 Score: 741
Period size: 147 Copynumber: 3.5 Consensus size: 146
26947467 AGGCTTACAT
* * * *
26947477 TTTTAAAACAAAGTTTTAATCTTTTCCAACTATTTCGAAATAAAGTTTTGATTTTTAAGAAAAAT
1 TTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAAGTTTTGATTTTTAAGAAAAAT
* * *
26947542 AGTGATTTTTTTAAAAAGAGAAATTTTATATTTTTAAAAATAAAAAT-TTGTTTTTAGTCATTTT
66 AGTGATTTTTTTTAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATT-TTTTTAGTCATTTT
* *
26947606 AAAGGAAATGTTTAAAT
130 AAAGGAAAAGTTTAAAA
*
26947623 TTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAAGCTTTGATTTTTAAGAAAAAT
1 TTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAAGTTTTGATTTTTAAGAAAAAT
*
26947688 AGTGATTATTTTTTTTAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTAGTCATT
66 AGTG---ATTTTTTTTAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATTTTTTTAGTCATT
26947753 TTAAAGGAAAA-TATT-AAA
128 TTAAAGGAAAAGT-TTAAAA
***** * * * * *
26947771 -TTTAAAATTTTTTTTTGATGTTTTTCAACTATTTCGAAATAAAATTTTGATTTTTAATAAAAAG
1 TTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAAGTTTTGATTTTTAAGAAAAAT
26947835 AGTGATTTTTTTTAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATATTTTTTAGTCATTTT
66 AGTGATTTTTTTTAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATAT-TTTTTTAGTCATTTT
*
26947900 AAATGAAAAGTTTAAAA
130 AAAGGAAAAGTTTAAAA
*
26947917 TTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAAGTTTTGATTTTTAAGAAAAGT
1 TTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAAGTTTTGATTTTTAAGAAAAAT
26947982 AGTGATTTTT
66 AGTGATTTTT
26947992 CTAAAGAAAA
Statistics
Matches: 325, Mismatches: 35, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
144 45 0.14
145 24 0.07
146 68 0.21
147 120 0.37
148 3 0.01
149 64 0.20
150 1 0.00
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (146 bp):
TTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAAGTTTTGATTTTTAAGAAAAAT
AGTGATTTTTTTTAAAAGAGAAAGTTTAGATTTTTAAAAATAAAAATATTTTTTTAGTCATTTTA
AAGGAAAAGTTTAAAA
Found at i:26948150 original size:710 final size:710
Alignment explanation
Indices: 26946754--26948178 Score: 2789
Period size: 710 Copynumber: 2.0 Consensus size: 710
26946744 CATTTTAAAG
26946754 GAAAGGCTTACATTTTTAAAACAAAGTTTTAATCTTTTCCAACTATTTCGAAATAAAGTTTTGAT
1 GAAAGGCTTACATTTTTAAAACAAAGTTTTAATCTTTTCCAACTATTTCGAAATAAAGTTTTGAT
26946819 TTTTAAGAAAAATAGTGATTTTTTTAAAAAGAGAAATTTTATATTTTTAAAAATAAAAATTTGTT
66 TTTTAAGAAAAATAGTGATTTTTTTAAAAAGAGAAATTTTATATTTTTAAAAATAAAAATTTGTT
26946884 TTTAGTCATTTTAAAGGAAATGTTTAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTC
131 TTTAGTCATTTTAAAGGAAATGTTTAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTC
26946949 AAAATAAAGCTTTGATTTTTAAGAAAAATAGTGATTATTTTTTTTAAAAGAGAAAGTTTAGATTT
196 AAAATAAAGCTTTGATTTTTAAGAAAAATAGTGATTATTTTTTTTAAAAGAGAAAGTTTAGATTT
26947014 TTAAAAATAAAAATATGTTTTTAGTCATTTTAAAGGAAAATATTAAATTTAAAATTTTTTTTTGA
261 TTAAAAATAAAAATATGTTTTTAGTCATTTTAAAGGAAAATATTAAATTTAAAATTTTTTTTTGA
26947079 TGTTTTTCAACTATTTCGAAATAAAATTTTGATTTTTAATAAAAAGAGTGATTTTTTTAAAAGAG
326 TGTTTTTCAACTATTTCGAAATAAAATTTTGATTTTTAATAAAAAGAGTGATTTTTTTAAAAGAG
26947144 AAAGTTTAGATTTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAATGAAAAGTTTAAAATTT
391 AAAGTTTAGATTTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAATGAAAAGTTTAAAATTT
*
26947209 TAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGATTTTTAAGAAAAGTAGT
456 TAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAAGTTTTGATTTTTAAGAAAAGTAGT
*
26947274 GATTTTTCTAAAGAAAACTTTGATTTTACAAAAAAAAAAATTCCAGCCACCATATGCGGCGGTTC
521 GATTTTTCTAAAGAAAACTTTGATTTTACAAAAAAAAAAATTCCAGCCACCATATGCAGCGGTTC
* *
26947339 CACCATCGGAGGCAGGAGAGTTGTTGGATTCTCCAGTGATGGAGCTATGGTCAACATAGAAGGAT
586 CACCATCGGAGGCAGGAGAGTTGTTGGACTCTCCAGTGATGGAGCTATGGCCAACATAGAAGGAT
26947404 GAAGACAAGGAGGAAGAGTTTTCTTTTTCTTTTTTTTTTTAAAATGAGGTCACAAGAAAA
651 GAAGACAAGGAGGAAGAGTTTTCTTTTTCTTTTTTTTTTTAAAATGAGGTCACAAGAAAA
26947464 GAAAGGCTTACATTTTTAAAACAAAGTTTTAATCTTTTCCAACTATTTCGAAATAAAGTTTTGAT
1 GAAAGGCTTACATTTTTAAAACAAAGTTTTAATCTTTTCCAACTATTTCGAAATAAAGTTTTGAT
26947529 TTTTAAGAAAAATAGTGATTTTTTTAAAAAGAGAAATTTTATATTTTTAAAAATAAAAATTTGTT
66 TTTTAAGAAAAATAGTGATTTTTTTAAAAAGAGAAATTTTATATTTTTAAAAATAAAAATTTGTT
26947594 TTTAGTCATTTTAAAGGAAATGTTTAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTC
131 TTTAGTCATTTTAAAGGAAATGTTTAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTC
26947659 AAAATAAAGCTTTGATTTTTAAGAAAAATAGTGATTATTTTTTTTAAAAGAGAAAGTTTAGATTT
196 AAAATAAAGCTTTGATTTTTAAGAAAAATAGTGATTATTTTTTTTAAAAGAGAAAGTTTAGATTT
26947724 TTAAAAATAAAAATATGTTTTTAGTCATTTTAAAGGAAAATATTAAATTTAAAATTTTTTTTTGA
261 TTAAAAATAAAAATATGTTTTTAGTCATTTTAAAGGAAAATATTAAATTTAAAATTTTTTTTTGA
26947789 TGTTTTTCAACTATTTCGAAATAAAATTTTGATTTTTAATAAAAAGAGTGATTTTTTTTAAAAGA
326 TGTTTTTCAACTATTTCGAAATAAAATTTTGATTTTTAATAAAAAGAGTGA-TTTTTTTAAAAGA
26947854 GAAAGTTTAGATTTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAATGAAAAGTTTAAAATT
390 GAAAGTTTAGATTTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAATGAAAAGTTTAAAATT
26947919 TTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAAGTTTTGATTTTTAAGAAAAGTAG
455 TTAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAAGTTTTGATTTTTAAGAAAAGTAG
26947984 TGATTTTTCTAAAGAAAACTTTGATTTTACAAAAAAAAAAATTCCAGCCACCATATGCAGCGGTT
520 TGATTTTTCTAAAGAAAACTTTGATTTTACAAAAAAAAAAATTCCAGCCACCATATGCAGCGGTT
26948049 CCACCATCGGAGGCAGGAGAGTTGTTGGACTCTCCAGTGATGGAGCTATGGCCAACATAGAAGGA
585 CCACCATCGGAGGCAGGAGAGTTGTTGGACTCTCCAGTGATGGAGCTATGGCCAACATAGAAGGA
*
26948114 TGAAGACAAGGAGGAAGAGTTTTCTTTTTC-TTTTTTTTTTAAAATGAGGTTACAAGAAAA
650 TGAAGACAAGGAGGAAGAGTTTTCTTTTTCTTTTTTTTTTTAAAATGAGGTCACAAGAAAA
26948174 GAAAG
1 GAAAG
26948179 AATTTCTCCT
Statistics
Matches: 709, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
710 410 0.58
711 299 0.42
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.40
Consensus pattern (710 bp):
GAAAGGCTTACATTTTTAAAACAAAGTTTTAATCTTTTCCAACTATTTCGAAATAAAGTTTTGAT
TTTTAAGAAAAATAGTGATTTTTTTAAAAAGAGAAATTTTATATTTTTAAAAATAAAAATTTGTT
TTTAGTCATTTTAAAGGAAATGTTTAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTC
AAAATAAAGCTTTGATTTTTAAGAAAAATAGTGATTATTTTTTTTAAAAGAGAAAGTTTAGATTT
TTAAAAATAAAAATATGTTTTTAGTCATTTTAAAGGAAAATATTAAATTTAAAATTTTTTTTTGA
TGTTTTTCAACTATTTCGAAATAAAATTTTGATTTTTAATAAAAAGAGTGATTTTTTTAAAAGAG
AAAGTTTAGATTTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAATGAAAAGTTTAAAATTT
TAAAACAAAATTTTGATCTTTTTCAACTATTTCAAAATAAAGTTTTGATTTTTAAGAAAAGTAGT
GATTTTTCTAAAGAAAACTTTGATTTTACAAAAAAAAAAATTCCAGCCACCATATGCAGCGGTTC
CACCATCGGAGGCAGGAGAGTTGTTGGACTCTCCAGTGATGGAGCTATGGCCAACATAGAAGGAT
GAAGACAAGGAGGAAGAGTTTTCTTTTTCTTTTTTTTTTTAAAATGAGGTCACAAGAAAA
Found at i:26948771 original size:44 final size:44
Alignment explanation
Indices: 26948721--26948809 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
26948711 CATCATCATG
26948721 TCAATGTCTTATTTATTTCATTTATTTAAGTTTTCTTTTTATTA
1 TCAATGTCTTATTTATTTCATTTATTTAAGTTTTCTTTTTATTA
26948765 TCAATGTCTTATTTATTTCATTTATTTAAGTTTTCTTTTTATTA
1 TCAATGTCTTATTTATTTCATTTATTTAAGTTTTCTTTTTATTA
26948809 T
1 T
26948810 TTCCCTTTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.22, C:0.09, G:0.04, T:0.64
Consensus pattern (44 bp):
TCAATGTCTTATTTATTTCATTTATTTAAGTTTTCTTTTTATTA
Found at i:26948811 original size:20 final size:20
Alignment explanation
Indices: 26948742--26948811 Score: 63
Period size: 20 Copynumber: 3.3 Consensus size: 20
26948732 TTTATTTCAT
26948742 TTATTTAAGTTTTCTTTTTA
1 TTATTTAAGTTTTCTTTTTA
*
26948762 TTA-TCAATGTCTTAT-TTATTTCA
1 TTATTTAA-GT-TT-TCTT-TTT-A
26948785 TTTATTTAAGTTTTCTTTTTA
1 -TTATTTAAGTTTTCTTTTTA
26948806 TTATTT
1 TTATTT
26948812 CCCTTTTTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 16
0.69 0.03 0.28
Matches are distributed among these distances:
19 3 0.08
20 11 0.28
21 5 0.12
22 8 0.20
23 5 0.12
24 5 0.12
25 3 0.08
ACGTcount: A:0.21, C:0.07, G:0.04, T:0.67
Consensus pattern (20 bp):
TTATTTAAGTTTTCTTTTTA
Found at i:26957685 original size:19 final size:19
Alignment explanation
Indices: 26957661--26957699 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
26957651 GGTTGTCTTA
26957661 ATTTTAGATAATTTATGTT
1 ATTTTAGATAATTTATGTT
*
26957680 ATTTTAGATTATTTATGTT
1 ATTTTAGATAATTTATGTT
26957699 A
1 A
26957700 ATTTGGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.59
Consensus pattern (19 bp):
ATTTTAGATAATTTATGTT
Found at i:26974815 original size:618 final size:618
Alignment explanation
Indices: 26973639--26974875 Score: 2474
Period size: 618 Copynumber: 2.0 Consensus size: 618
26973629 CACACGGGAG
26973639 TGTGGGTCCACATAGGCTAACATCACCGGCTTGTAGGCCCATTTTCACTGTTTGACTGATAAGGT
1 TGTGGGTCCACATAGGCTAACATCACCGGCTTGTAGGCCCATTTTCACTGTTTGACTGATAAGGT
26973704 TGCACGGGTCGCCCAAGTCGATTGTGAACCTACTGTAGGGTTGGTAAGCTTACCTAGACCCCTAA
66 TGCACGGGTCGCCCAAGTCGATTGTGAACCTACTGTAGGGTTGGTAAGCTTACCTAGACCCCTAA
26973769 TTGACTGAAATGACTGTATGACTGATATGATTAAGCCTGATGATGTCCCACTGATTTGATAATGT
131 TTGACTGAAATGACTGTATGACTGATATGATTAAGCCTGATGATGTCCCACTGATTTGATAATGT
26973834 ATGCCTTGTTTACATGCATGATATTATGTTATAGCATGTCATATCTGTATATTGCATTGCATTGG
196 ATGCCTTGTTTACATGCATGATATTATGTTATAGCATGTCATATCTGTATATTGCATTGCATTGG
26973899 GTTGGGGGATTATAATGTTTGGAGGAAGTGTACTGAAAGGCCTCGAGCCTAATCTACTTGCAGCT
261 GTTGGGGGATTATAATGTTTGGAGGAAGTGTACTGAAAGGCCTCGAGCCTAATCTACTTGCAGCT
26973964 AAGCTGTAAACTACTGTCTAGTGCCGCATTTGGTACTACTTGGAGTGTAGGGATGGGTGGGTTGA
326 AAGCTGTAAACTACTGTCTAGTGCCGCATTTGGTACTACTTGGAGTGTAGGGATGGGTGGGTTGA
26974029 TTATATCCCCACATAGAGTGTAGGGTTGGACGGAGATGGTATGTAGAGGCTAGATGGGTAAGATT
391 TTATATCCCCACATAGAGTGTAGGGTTGGACGGAGATGGTATGTAGAGGCTAGATGGGTAAGATT
26974094 TTTGTAACTGAATATCTGTTACTGCTACTGATACTGTGATGGGCTAAAGCCCCTACTGCATGATT
456 TTTGTAACTGAATATCTGTTACTGCTACTGATACTGTGATGGGCTAAAGCCCCTACTGCATGATT
26974159 GTTTTTGTACCGAGATGAGCTAAGGCCCAAACTGGACTGATATTAATACTGAAAAGGGCTTAAGC
521 GTTTTTGTACCGAGATGAGCTAAGGCCCAAACTGGACTGATATTAATACTGAAAAGGGCTTAAGC
26974224 CCAAACTGTGATTATTTGTTTACTGTCTGTTCA
586 CCAAACTGTGATTATTTGTTTACTGTCTGTTCA
26974257 TGTGGGTCCACATAGGCTAACATCACCGGCTTGTAGGCCCATTTTCACTGTTTGACTGATAAGGT
1 TGTGGGTCCACATAGGCTAACATCACCGGCTTGTAGGCCCATTTTCACTGTTTGACTGATAAGGT
26974322 TGCACGGGTCGCCCAAGTCGATTGTGAACCTACTGTAGGGTTGGTAAGCTTACCTAGACCCCTAA
66 TGCACGGGTCGCCCAAGTCGATTGTGAACCTACTGTAGGGTTGGTAAGCTTACCTAGACCCCTAA
26974387 TTGACTGAAATGACTGTATGACTGATATGATTAAGCCTGATGATGTCCCACTGATTTGATAATGT
131 TTGACTGAAATGACTGTATGACTGATATGATTAAGCCTGATGATGTCCCACTGATTTGATAATGT
26974452 ATGCCTTGTTTACATGCATGATATTATGTTATAGCATGTCATATCTGTATATTGCATTGCATTGG
196 ATGCCTTGTTTACATGCATGATATTATGTTATAGCATGTCATATCTGTATATTGCATTGCATTGG
26974517 GTTGGGGGATTATAATGTTTGGAGGAAGTGTACTGAAAGGCCTCGAGCCTAATCTACTTGCAGCT
261 GTTGGGGGATTATAATGTTTGGAGGAAGTGTACTGAAAGGCCTCGAGCCTAATCTACTTGCAGCT
26974582 AAGCTGTAAACTACTGTCTAGTGCCGCATTTGGTACTACTTGGAGTGTAGGGATGGGTGGGTTGA
326 AAGCTGTAAACTACTGTCTAGTGCCGCATTTGGTACTACTTGGAGTGTAGGGATGGGTGGGTTGA
26974647 TTATATCCCCACATAGAGTGTAGGGTTGGACGGAGATGGTATGTAGAGGCTAGATGGGTAAGATT
391 TTATATCCCCACATAGAGTGTAGGGTTGGACGGAGATGGTATGTAGAGGCTAGATGGGTAAGATT
26974712 TTTGTAACTGAATATCTGTTACTGCTACTGATACTGTGATGGGCTAAAGCCCCTACTGCATGATT
456 TTTGTAACTGAATATCTGTTACTGCTACTGATACTGTGATGGGCTAAAGCCCCTACTGCATGATT
26974777 GTTTTTGTACCGAGATGAGCTAAGGCCCAAACTGGACTGATATTAATACTGAAAAGGGCTTAAGC
521 GTTTTTGTACCGAGATGAGCTAAGGCCCAAACTGGACTGATATTAATACTGAAAAGGGCTTAAGC
26974842 CCAAACTGTGATTATTTGTTTACTGTCTGTTCA
586 CCAAACTGTGATTATTTGTTTACTGTCTGTTCA
26974875 T
1 T
26974876 TTGTATAGGG
Statistics
Matches: 619, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
618 619 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (618 bp):
TGTGGGTCCACATAGGCTAACATCACCGGCTTGTAGGCCCATTTTCACTGTTTGACTGATAAGGT
TGCACGGGTCGCCCAAGTCGATTGTGAACCTACTGTAGGGTTGGTAAGCTTACCTAGACCCCTAA
TTGACTGAAATGACTGTATGACTGATATGATTAAGCCTGATGATGTCCCACTGATTTGATAATGT
ATGCCTTGTTTACATGCATGATATTATGTTATAGCATGTCATATCTGTATATTGCATTGCATTGG
GTTGGGGGATTATAATGTTTGGAGGAAGTGTACTGAAAGGCCTCGAGCCTAATCTACTTGCAGCT
AAGCTGTAAACTACTGTCTAGTGCCGCATTTGGTACTACTTGGAGTGTAGGGATGGGTGGGTTGA
TTATATCCCCACATAGAGTGTAGGGTTGGACGGAGATGGTATGTAGAGGCTAGATGGGTAAGATT
TTTGTAACTGAATATCTGTTACTGCTACTGATACTGTGATGGGCTAAAGCCCCTACTGCATGATT
GTTTTTGTACCGAGATGAGCTAAGGCCCAAACTGGACTGATATTAATACTGAAAAGGGCTTAAGC
CCAAACTGTGATTATTTGTTTACTGTCTGTTCA
Found at i:26975241 original size:18 final size:18
Alignment explanation
Indices: 26975215--26975252 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
26975205 GCAATAAGAA
*
26975215 AACGTTTTG-AAATTGAAT
1 AACGATTTGTAAA-TGAAT
26975233 AACGATTTGTAAATGAAT
1 AACGATTTGTAAATGAAT
26975251 AA
1 AA
26975253 TATTTTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.34
Consensus pattern (18 bp):
AACGATTTGTAAATGAAT
Found at i:26980072 original size:32 final size:32
Alignment explanation
Indices: 26980031--26980094 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
26980021 TTAATGTACA
*
26980031 TGGGAGATCTTTAAAATTGATAAAACTAGCAT
1 TGGGAGATCTTTAAAATTGAGAAAACTAGCAT
*
26980063 TGGGAGATCTTTAAAGTTGAGAAAACTAGCAT
1 TGGGAGATCTTTAAAATTGAGAAAACTAGCAT
26980095 ATAATTGCGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (32 bp):
TGGGAGATCTTTAAAATTGAGAAAACTAGCAT
Found at i:26985471 original size:17 final size:18
Alignment explanation
Indices: 26985446--26985486 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
26985436 AAGTCTATAG
*
26985446 AAAACATTA-CTTATTAT
1 AAAATATTATCTTATTAT
*
26985463 AAAATATTATTTTATTAT
1 AAAATATTATCTTATTAT
26985481 AAAATA
1 AAAATA
26985487 AATTCCGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (18 bp):
AAAATATTATCTTATTAT
Found at i:26985640 original size:19 final size:18
Alignment explanation
Indices: 26985603--26985645 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
26985593 CTAAAAACAC
26985603 CCAAAAAATTCAACTTTT
1 CCAAAAAATTCAACTTTT
*
26985621 CTAAAAAA-TCAATCTATTT
1 CCAAAAAATTCAA-CT-TTT
26985640 CCAAAA
1 CCAAAA
26985646 CTTAAATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 4 0.19
18 9 0.43
19 8 0.38
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (18 bp):
CCAAAAAATTCAACTTTT
Found at i:26986130 original size:14 final size:13
Alignment explanation
Indices: 26986108--26986156 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 13
26986098 TTATATATTT
*
26986108 ATAAATAAAATAA
1 ATAATTAAAATAA
26986121 GATAATTAAAATAA
1 -ATAATTAAAATAA
*
26986135 A-AATTAATAAAAA
1 ATAATTAA-AATAA
26986148 ATAATTAAA
1 ATAATTAAA
26986157 TAATTTTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
12 6 0.19
13 7 0.23
14 18 0.58
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (13 bp):
ATAATTAAAATAA
Found at i:26991908 original size:40 final size:41
Alignment explanation
Indices: 26991827--26991914 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 41
26991817 ATTTTATCTG
* *
26991827 AATTTTTGTAAATATTTTGTAGTGTTAATTATAAATTTTAT
1 AATTTTTGTAAATATTTTGTAGTATTAATTATAAATCTTAT
* * **
26991868 -ATTTTTGTGAATATTTTGTATTATTAATTATAGGTCTTAT
1 AATTTTTGTAAATATTTTGTAGTATTAATTATAAATCTTAT
26991908 AATTTTT
1 AATTTTT
26991915 TTTTCCATTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
40 34 0.85
41 6 0.15
ACGTcount: A:0.31, C:0.01, G:0.10, T:0.58
Consensus pattern (41 bp):
AATTTTTGTAAATATTTTGTAGTATTAATTATAAATCTTAT
Found at i:26991996 original size:19 final size:19
Alignment explanation
Indices: 26991968--26992004 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26991958 TGTTAGAGTT
* *
26991968 TTAAGTCTTATTATTTTTG
1 TTAAGCCTTATCATTTTTG
26991987 TTAAGCCTTATCATTTTT
1 TTAAGCCTTATCATTTTT
26992005 TTTTATTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.11, G:0.08, T:0.59
Consensus pattern (19 bp):
TTAAGCCTTATCATTTTTG
Found at i:26993230 original size:25 final size:26
Alignment explanation
Indices: 26993202--26993255 Score: 101
Period size: 25 Copynumber: 2.1 Consensus size: 26
26993192 TTTCAAAGTC
26993202 AGGGTCATATGTTGATGCAAAAGA-A
1 AGGGTCATATGTTGATGCAAAAGAGA
26993227 AGGGTCATATGTTGATGCAAAAGAGA
1 AGGGTCATATGTTGATGCAAAAGAGA
26993253 AGG
1 AGG
26993256 CACTTGTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 24 0.86
26 4 0.14
ACGTcount: A:0.39, C:0.07, G:0.31, T:0.22
Consensus pattern (26 bp):
AGGGTCATATGTTGATGCAAAAGAGA
Found at i:27002997 original size:19 final size:19
Alignment explanation
Indices: 27002973--27003011 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
27002963 CCTTTTGTCG
*
27002973 AGATACCACTGACTAACAT
1 AGATACCACTAACTAACAT
27002992 AGATACCACTAACTAACAT
1 AGATACCACTAACTAACAT
27003011 A
1 A
27003012 TTTCTTCCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.26, G:0.08, T:0.21
Consensus pattern (19 bp):
AGATACCACTAACTAACAT
Found at i:27006179 original size:13 final size:14
Alignment explanation
Indices: 27006163--27006212 Score: 52
Period size: 13 Copynumber: 3.7 Consensus size: 14
27006153 CATGCAAAAG
27006163 AATCCAAA-TCCAA
1 AATCCAAAGTCCAA
27006176 AATCCAAAGTCC-A
1 AATCCAAAGTCCAA
*
27006189 AATACCAAATTCC-A
1 AAT-CCAAAGTCCAA
*
27006203 AGTCCAAAGT
1 AATCCAAAGT
27006213 AATAAAACAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
13 18 0.56
14 14 0.44
ACGTcount: A:0.48, C:0.28, G:0.06, T:0.18
Consensus pattern (14 bp):
AATCCAAAGTCCAA
Found at i:27006190 original size:20 final size:20
Alignment explanation
Indices: 27006165--27006210 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
27006155 TGCAAAAGAA
27006165 TCCAAAT-CCAAAATCCAAAG
1 TCCAAATACCAAAATCC-AAG
*
27006185 TCCAAATACCAAATTCCAAG
1 TCCAAATACCAAAATCCAAG
27006205 TCCAAA
1 TCCAAA
27006211 GTAATAAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.48, C:0.30, G:0.04, T:0.17
Consensus pattern (20 bp):
TCCAAATACCAAAATCCAAG
Found at i:27010563 original size:21 final size:21
Alignment explanation
Indices: 27010524--27010565 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
27010514 GATGTTTTGA
*
27010524 CATGTTTTGAGTTGATTTAAT
1 CATGTTTTGAGATGATTTAAT
27010545 CATGTTTTGA-ATGAGTTTAAT
1 CATGTTTTGAGATGA-TTTAAT
27010566 TGATGGAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.26, C:0.05, G:0.19, T:0.50
Consensus pattern (21 bp):
CATGTTTTGAGATGATTTAAT
Found at i:27011760 original size:21 final size:21
Alignment explanation
Indices: 27011736--27011777 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
27011726 GAAAAGGGGG
27011736 TTGTGAAAGGCATGTTGACCT
1 TTGTGAAAGGCATGTTGACCT
27011757 TTGTGAAAGGCATGTTGACCT
1 TTGTGAAAGGCATGTTGACCT
27011778 AACAAAAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (21 bp):
TTGTGAAAGGCATGTTGACCT
Found at i:27016111 original size:19 final size:19
Alignment explanation
Indices: 27016083--27016119 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
27016073 AAGGGCGTTA
*
27016083 CATAATTTTTTATTATTTT
1 CATAAATTTTTATTATTTT
27016102 CATAAATTTTTATTATTT
1 CATAAATTTTTATTATTT
27016120 ATCTCTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (19 bp):
CATAAATTTTTATTATTTT
Found at i:27019830 original size:173 final size:172
Alignment explanation
Indices: 27019476--27019836 Score: 403
Period size: 174 Copynumber: 2.1 Consensus size: 172
27019466 TTAAGGATCA
* * * * * *
27019476 TACAAATTTAAATGAAA-TTATAAGGATAAATAAATATTTATTATATGAATCTTGGATTTAATTT
1 TACAAATTTTAAT-AAAGTTGTAAGGATAAAAAAACATATATTATATGAATCTTGGATTGAATTT
* * * *
27019540 AAATGATTCATTCAATCTATTTAAAATCTAAGACTCTAATAAGGTAAACAATGTTAGTTAACATT
65 AAATGATTCATTCAATCTATTTAAAATATAAGACTCTAAAAAGGCAAACAATGTTACTTAACATT
* * **
27019605 TCGATTATGAGTTAATTGAATGCCACAACCTCATTATTGATAG
130 TCAATTATGAGTTAATAGAATAACACAACCTCATTATTGATAG
*
27019648 TACAAATTTTAGTAAAGTTGTAAGGATAAAAAAAACATATATTATATGAATCTTGGATTGAATTT
1 TACAAATTTTAATAAAGTTGTAAGGAT-AAAAAAACATATATTATATGAATCTTGGATTGAATTT
* * * **
27019713 AAATGATTCATTCACTCATTTTTAAAATATAAGACTAC-AAAAAGGCAAATAATGTTACTTAATT
65 AAATGATTCATTCAATC-TATTTAAAATATAAGACT-CTAAAAAGGCAAACAATGTTACTTAACA
* *
27019777 TTTCAATTA-GAAGTTAACTAG-ATAATA-AGACCTCATTGATT-ATGG
128 TTTCAATTATG-AGTTAA-TAGAATAACACA-ACCTCATT-ATTGATAG
27019822 TA-AAATTTTAATAAA
1 TACAAATTTTAATAAA
27019837 TATCGAATCA
Statistics
Matches: 158, Mismatches: 23, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
171 3 0.02
172 20 0.13
173 63 0.40
174 66 0.42
175 6 0.04
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.37
Consensus pattern (172 bp):
TACAAATTTTAATAAAGTTGTAAGGATAAAAAAACATATATTATATGAATCTTGGATTGAATTTA
AATGATTCATTCAATCTATTTAAAATATAAGACTCTAAAAAGGCAAACAATGTTACTTAACATTT
CAATTATGAGTTAATAGAATAACACAACCTCATTATTGATAG
Found at i:27020239 original size:39 final size:39
Alignment explanation
Indices: 27020163--27020238 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 39
27020153 ATTTCCCTTA
*
27020163 AGTTTTAATGATGTTTATAACAATAGATAAAGAAAAAAT
1 AGTTTTAATGATATTTATAACAATAGATAAAGAAAAAAT
*
27020202 AGTTTTAATGA-ATTTATAATAATAGATAAAGAAAAAA
1 AGTTTTAATGATATTTATAACAATAGATAAAGAAAAAA
27020239 AAAAGATGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
38 24 0.69
39 11 0.31
ACGTcount: A:0.54, C:0.01, G:0.12, T:0.33
Consensus pattern (39 bp):
AGTTTTAATGATATTTATAACAATAGATAAAGAAAAAAT
Found at i:27023555 original size:26 final size:25
Alignment explanation
Indices: 27023519--27023568 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
27023509 AGAAATGTTT
27023519 GAAACAAAAAATACAAGAAAGAGAGA
1 GAAACAAAAAAT-CAAGAAAGAGAGA
* *
27023545 GAAACTAAAAATGAAGAAAGAGAG
1 GAAACAAAAAATCAAGAAAGAGAG
27023569 GATGAATGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.66, C:0.06, G:0.22, T:0.06
Consensus pattern (25 bp):
GAAACAAAAAATCAAGAAAGAGAGA
Found at i:27029882 original size:28 final size:28
Alignment explanation
Indices: 27029845--27029902 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
27029835 TATTAAAAAC
* * *
27029845 AATTTTTTAAAAGAATGATTTTAGGGAA
1 AATTTGTTAAAAAAATGATTTTAGGCAA
*
27029873 AATTTGTTAAAAAAATTATTTTAGGCAA
1 AATTTGTTAAAAAAATGATTTTAGGCAA
27029901 AA
1 AA
27029903 ATACCAAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.47, C:0.02, G:0.14, T:0.38
Consensus pattern (28 bp):
AATTTGTTAAAAAAATGATTTTAGGCAA
Found at i:27029951 original size:19 final size:21
Alignment explanation
Indices: 27029908--27029951 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
27029898 CAAAAATACC
*
27029908 AAAAGAAATCAACTATTCTAG
1 AAAAGAAATCAACTATTCTAA
*
27029929 AAAATAAATCAA-T-TTCTAA
1 AAAAGAAATCAACTATTCTAA
27029948 AAAA
1 AAAA
27029952 ATTATTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 9 0.43
20 1 0.05
21 11 0.52
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (21 bp):
AAAAGAAATCAACTATTCTAA
Found at i:27034177 original size:71 final size:71
Alignment explanation
Indices: 27034061--27034261 Score: 219
Period size: 71 Copynumber: 2.8 Consensus size: 71
27034051 TAGCGACCTG
* * * * *
27034061 CGATGGCTGAGATACAACTTAAGTTGTGGATTCTTGACAACTTGAGTGAGCAACATCGAGTCATT
1 CGATGGCTGAGATCCAACATATGTTGTGGATTCTTGATAGCTTGAGTGAGCAACATCGAG-CATT
27034126 AT-TTAA
65 ATCTTAA
* * * *
27034132 CGATGGCTGAGATCCAACATGTGTTGCGGATTCTTGATAGCTTGAGTGAACAACA-C-CGCATTA
1 CGATGGCTGAGATCCAACATATGTTGTGGATTCTTGATAGCTTGAGTGAGCAACATCGAGCATTA
*
27034195 TACCTTAT
66 T--CTTAA
* * * **
27034203 CGATAGCTGAGATCCAACACATTTTGTGGATTCTCAATAGCTTGAGTGAGCAACATCGA
1 CGATGGCTGAGATCCAACATATGTTGTGGATTCTTGATAGCTTGAGTGAGCAACATCGA
27034262 ATAAAGTTCA
Statistics
Matches: 106, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
68 6 0.06
69 1 0.01
70 1 0.01
71 97 0.92
72 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (71 bp):
CGATGGCTGAGATCCAACATATGTTGTGGATTCTTGATAGCTTGAGTGAGCAACATCGAGCATTA
TCTTAA
Found at i:27042942 original size:15 final size:15
Alignment explanation
Indices: 27042922--27042954 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
27042912 ATAACTAGTA
27042922 TATAAT-TATATTTAT
1 TATAATATATA-TTAT
27042937 TATAATATATATTAT
1 TATAATATATATTAT
27042952 TAT
1 TAT
27042955 TATCAACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TATAATATATATTAT
Found at i:27045974 original size:19 final size:19
Alignment explanation
Indices: 27045945--27045988 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
27045935 AAAAAACAAC
27045945 AAAAG-AAAAAAGAAAAAG
1 AAAAGAAAAAAAGAAAAAG
*
27045963 AAAAGAAAAAAAGAAGAAG
1 AAAAGAAAAAAAGAAAAAG
*
27045982 AAGAGAA
1 AAAAGAA
27045989 GAGCATACGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (19 bp):
AAAAGAAAAAAAGAAAAAG
Found at i:27045979 original size:22 final size:21
Alignment explanation
Indices: 27045950--27045990 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
27045940 ACAACAAAAG
27045950 AAAAAAGAAAAAGAAAAGAAA
1 AAAAAAGAAAAAGAAAAGAAA
* *
27045971 AAAAGAAGAAGAAGAGAAGA
1 AAAA-AAGAAAAAGAAAAGA
27045991 GCATACGTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (21 bp):
AAAAAAGAAAAAGAAAAGAAA
Found at i:27047581 original size:20 final size:18
Alignment explanation
Indices: 27047548--27047584 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
27047538 TTTTATGTTG
27047548 ATATGTTTAATTTAATTA
1 ATATGTTTAATTTAATTA
27047566 ATATGGTTTAAATTTAATT
1 ATAT-GTTT-AATTTAATT
27047585 TGTGTTAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 4 0.24
20 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (18 bp):
ATATGTTTAATTTAATTA
Found at i:27050402 original size:34 final size:34
Alignment explanation
Indices: 27050359--27050427 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
27050349 GTTATAACAA
*
27050359 TAGATAAAGAAAAAAATGTTGTAAAACTGCTTCT
1 TAGATAAAGAAAAAAATGTTGTAAAACTACTTCT
27050393 TAGATAAAGAAAAAAATGTTGTAAAACTACTTCT
1 TAGATAAAGAAAAAAATGTTGTAAAACTACTTCT
27050427 T
1 T
27050428 CTGCCCTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.48, C:0.09, G:0.13, T:0.30
Consensus pattern (34 bp):
TAGATAAAGAAAAAAATGTTGTAAAACTACTTCT
Found at i:27050945 original size:21 final size:21
Alignment explanation
Indices: 27050919--27050962 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
27050909 AAAAAGGTTT
27050919 GAAATGACTAGATAATTACAA
1 GAAATGACTAGATAATTACAA
27050940 GAAATGACTAGATAATTACAA
1 GAAATGACTAGATAATTACAA
27050961 GA
1 GA
27050963 GAGGGAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.52, C:0.09, G:0.16, T:0.23
Consensus pattern (21 bp):
GAAATGACTAGATAATTACAA
Found at i:27056231 original size:15 final size:15
Alignment explanation
Indices: 27056211--27056255 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
27056201 TTCAAAAAAA
*
27056211 AAAAGAGAAAGAAAG
1 AAAAGAAAAAGAAAG
27056226 AAAAGAAAAAGAAAG
1 AAAAGAAAAAGAAAG
*
27056241 AAAAAGGAAAAGAAA
1 -AAAAGAAAAAGAAA
27056256 AGCAAAATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 14 0.52
16 13 0.48
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAAGAAAG
Found at i:27056234 original size:22 final size:22
Alignment explanation
Indices: 27056204--27056256 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
27056194 CAAATTTTTC
27056204 AAAA-AAAAA-AAGAGAAAGAAAG
1 AAAAGAAAAAGAA-AGAAA-AAAG
*
27056226 AAAAGAAAAAGAAAGAAAAAGG
1 AAAAGAAAAAGAAAGAAAAAAG
27056248 AAAAGAAAA
1 AAAAGAAAA
27056257 GCAAAATGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 16 0.57
23 10 0.36
24 2 0.07
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (22 bp):
AAAAGAAAAAGAAAGAAAAAAG
Found at i:27056238 original size:19 final size:20
Alignment explanation
Indices: 27056206--27056243 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
27056196 AATTTTTCAA
27056206 AAAAAAAAAGAGAAAGAAAG
1 AAAAAAAAAGAGAAAGAAAG
*
27056226 AAAAGAAAA-AGAAAGAAA
1 AAAAAAAAAGAGAAAGAAA
27056244 AAGGAAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAGAGAAAGAAAG
Found at i:27057719 original size:132 final size:132
Alignment explanation
Indices: 27057482--27058090 Score: 944
Period size: 132 Copynumber: 4.7 Consensus size: 132
27057472 ATCGGTGAAA
*
27057482 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * * *
27057547 GCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCATATTTAA
66 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGAGAAGCAGATTTAA
27057612 GC
131 GC
*
27057614 CACCAAGCGTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
*
27057679 GCAGTAGTGGAGCAGATCAAAGAAGGCAAATCTTATCTTTCCAAGATAGTGAGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGAGAAGCAGATTTAA
27057744 GC
131 GC
* * *
27057746 CACAAAGCCTTATCTCCCTGAGCAGCAGCGGAGTA----G--G-TTGTAGATCCTATCTCCCTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * *
27057804 GCAGTAGTGGAGTAGATCGAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGAGAAGCAGATTTAA
27057869 GC
131 GC
* *
27057871 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCTTAA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
*
27057936 GCAGTAGGGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGAGAAGCAGATTTAA
66 GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGAGAAGCAGATTTAA
27058001 GC
131 GC
* * * *
27058003 CACCAAGCCTTATCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATGGCAAATCTTATCTCCCTGA
1 CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT-A
** * *
27058068 AGTTGCAGTGGAGCAGATTAAAG
65 AGCAGTAGTGGAGCAGATCAAAG
27058091 TCGATAATCC
Statistics
Matches: 434, Mismatches: 35, Indels: 15
0.90 0.07 0.03
Matches are distributed among these distances:
125 115 0.26
126 1 0.00
128 1 0.00
129 1 0.00
131 1 0.00
132 296 0.68
133 19 0.04
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (132 bp):
CACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
GCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGAGAAGCAGATTTAA
GC
Found at i:27057950 original size:257 final size:257
Alignment explanation
Indices: 27057526--27058047 Score: 945
Period size: 257 Copynumber: 2.0 Consensus size: 257
27057516 AGGTTGAAGA
*
27057526 TTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAA
1 TTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAA
* * *
27057591 GATAGTGGGAAGCATATTTAAGCCACCAAGCGTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAA
66 GATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAA
*
27057656 GATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAAGGCAAATCTTATCTTTCC
131 GATTGTAGATCTTATCTCCCTAAGCAGTAGGGGAGCAGATCAAAGAAGGCAAATCTTATCTTTCC
27057721 AAGATAGTGAGAAGCAGATTTAAGCCACAAAGCCTTATCTCCCTGAGCAGCAGCGGAGTAGG
196 AAGATAGTGAGAAGCAGATTTAAGCCACAAAGCCTTATCTCCCTGAGCAGCAGCGGAGTAGG
* *
27057783 TTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCAAATCTTATCTTTCCAA
1 TTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAA
27057848 GATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAA
66 GATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAA
* *
27057913 GATTGTAGATCTTATCTCCTTAAGCAGTAGGGGAGCAGATCAAAGACGGCAAATCTTATCTTTCC
131 GATTGTAGATCTTATCTCCCTAAGCAGTAGGGGAGCAGATCAAAGAAGGCAAATCTTATCTTTCC
*
27057978 AAGATAGTGAGAAGCAGATTTAAGCCACCAAGCCTTATCTCCCTGAGCAGCAGCGGAGTAGG
196 AAGATAGTGAGAAGCAGATTTAAGCCACAAAGCCTTATCTCCCTGAGCAGCAGCGGAGTAGG
*
27058040 TTGAAGAT
1 TTGTAGAT
27058048 GGCAAATCTT
Statistics
Matches: 254, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
257 254 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (257 bp):
TTGTAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAA
GATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAA
GATTGTAGATCTTATCTCCCTAAGCAGTAGGGGAGCAGATCAAAGAAGGCAAATCTTATCTTTCC
AAGATAGTGAGAAGCAGATTTAAGCCACAAAGCCTTATCTCCCTGAGCAGCAGCGGAGTAGG
Found at i:27058105 original size:44 final size:43
Alignment explanation
Indices: 27058052--27058638 Score: 312
Period size: 44 Copynumber: 13.6 Consensus size: 43
27058042 GAAGATGGCA
27058052 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTC-AT
* ** * * * *
27058096 AATCCTATCTCATTGAAGTTGTAGTGGAGCGGATTAAAGCCTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAT
* * * ***
27058139 GGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCA-TC-T
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAT
* * *
27058180 AATCTTATCTCCCTAAAGTTGCAATGGAGCAGACTCAGCAAG-CA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA--AAGTCAT
*
27058224 AGTCTTATC-CTCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGAT
1 AATCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAGTC-AT
* ** * * * *
27058268 AATCCTATCTCATTGAAGTTGTAGTGGAGCGGATTAAAGCCTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAT
* * * ***
27058311 GGATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCA-TC-T
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAT
* * *
27058352 AATCTTATCTCCCTAAAGTTGCAATGGAGCAGACTCAGCAAG-CA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA--AAGTCAT
* * * *
27058396 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGTAGACTGAAGATGGCA-
1 AATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAA-A-GTCAT
* * *
27058441 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAGAGCCGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTC-AT
* * * ** *
27058485 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACCTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAT
* ** ** * * ***
27058528 GGATCTTATCTCTTTGAAGTTATAG-AGAGCTGA-TCGCGTC-T
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAT
* * * *
27058569 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGT-CAT
27058612 AAGTCTTATC-CTCCTGAAGTTGCAGTG
1 AA-TCTTATCTC-CCTGAAGTTGCAGTG
27058639 AGACAGGCTA
Statistics
Matches: 408, Mismatches: 100, Indels: 70
0.71 0.17 0.12
Matches are distributed among these distances:
40 58 0.14
41 28 0.07
42 12 0.03
43 37 0.09
44 242 0.59
45 28 0.07
46 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAT
Found at i:27058241 original size:172 final size:172
Alignment explanation
Indices: 27058049--27058508 Score: 721
Period size: 172 Copynumber: 2.7 Consensus size: 172
27058039 GTTGAAGATG
*
27058049 GCAAATCTTAT-CTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCCTATCTCATTGAA
1 GCAAGTCTTATCCT-CCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCCTATCTCATTGAA
27058113 GTTGTAGTGGAGCGGATTAAAGCCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
65 GTTGTAGTGGAGCGGATTAAAGCCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
27058178 CTAATCTTATCTCCCTAAAGTTGCAATGGAGCAGACTCAGCAA
130 CTAATCTTATCTCCCTAAAGTTGCAATGGAGCAGACTCAGCAA
27058221 GCAAGTCTTATCCTCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCCTATCTCATTGAAG
1 GCAAGTCTTATCCTCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCCTATCTCATTGAAG
27058286 TTGTAGTGGAGCGGATTAAAGCCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATC
66 TTGTAGTGGAGCGGATTAAAGCCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATC
27058351 TAATCTTATCTCCCTAAAGTTGCAATGGAGCAGACTCAGCAA
131 TAATCTTATCTCCCTAAAGTTGCAATGGAGCAGACTCAGCAA
* * * * * **
27058393 GCAAGTCTTATCCTCCTGAAGTTGCAGT-GAGGTAGACTGAAGATGGCA-AATCTTATCTCCCTG
1 GCAAGTCTTATCCTCCTGAAGTTGCAGTGGA-GCAGATTAAAG-TCG-ATAATCCTATCTCATTG
* * * * * *
27058456 AAGTTGTAGTGGAGCAGATTAGAGCCGAT-AATCCTATCTCCCTGAAGTTGCAG
63 AAGTTGTAGTGGAGCGGATTAAAGCC-TTGGATCTTATCTCTCTGAAGTTGCAG
27058509 TGGAGCGGAT
Statistics
Matches: 269, Mismatches: 14, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
171 2 0.01
172 204 0.76
173 61 0.23
174 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (172 bp):
GCAAGTCTTATCCTCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCCTATCTCATTGAAG
TTGTAGTGGAGCGGATTAAAGCCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATC
TAATCTTATCTCCCTAAAGTTGCAATGGAGCAGACTCAGCAA
Found at i:27058412 original size:84 final size:84
Alignment explanation
Indices: 27058142--27058419 Score: 314
Period size: 84 Copynumber: 3.3 Consensus size: 84
27058132 AAGCCTTGGA
27058142 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCTTATCTCCCTAAAGTTGCAATGG
1 TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCTTATCTCCCTAAAGTTGCAATGG
27058207 AGCAGACTCAGCAAGCAAG
66 AGCAGACTCAGCAAGCAAG
* *** * ** * *
27058226 TCTTATC-CTCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCCTATCTCATTGAAGTTGT
1 TCTTATCTCT-CTGAAGTTGCAG-AGAGCAGATCGCA-TC--TAATCTTATCTCCCTAAAGTTGC
* * * **
27058290 AGTGGAGCGGA-TTA--AAGCCTTGG
61 AATGGAGCAGACTCAGCAAG-C-AAG
27058313 ATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCTTATCTCCCTAAAGTTGCAATG
1 -TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCTTATCTCCCTAAAGTTGCAATG
27058378 GAGCAGACTCAGCAAGCAAG
65 GAGCAGACTCAGCAAGCAAG
27058398 TCTTATC-CTCCTGAAGTTGCAG
1 TCTTATCTCT-CTGAAGTTGCAG
27058420 TGAGGTAGAC
Statistics
Matches: 153, Mismatches: 28, Indels: 26
0.74 0.14 0.13
Matches are distributed among these distances:
83 4 0.03
84 65 0.42
85 15 0.10
86 6 0.04
87 15 0.10
88 46 0.30
89 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (84 bp):
TCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAATCTTATCTCCCTAAAGTTGCAATGG
AGCAGACTCAGCAAGCAAG
Found at i:27058504 original size:217 final size:217
Alignment explanation
Indices: 27058221--27058640 Score: 644
Period size: 217 Copynumber: 1.9 Consensus size: 217
27058211 GACTCAGCAA
* * *
27058221 GCAAGTCTTATCCTCCTGAAGTTGCAGTGGAGCAGATTAAAGTCGATAATCCTATCTCATTGAAG
1 GCAAATCTTATCCTCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCACTGAAG
* * * *
27058286 TTGTAGTGGAGCGGATTAAAGCCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATC
66 TTGCAGTGGAGCGGATCAAAACCTTGGATCTTATCTCTCTGAAGTTACAGAGAGCAGATCGCATC
* *
27058351 TAATCTTATCTCCCTAAAGTTGCAATGGAGCAGACTCAGCAAGCAAGTCTTATCCTCCTGAAGTT
131 TAATCTTATCTCCCTAAAGTTGCAATGGAGCAGACTAAGCAAACAAGTCTTATCCTCCTGAAGTT
27058416 GCAGTGAGGTAGACTGAAGATG
196 GCAGTGAGGTAGACTGAAGATG
* * *
27058438 GCAAATCTTAT-CTCCCTGAAGTTGTAGTGGAGCAGATTAGAGCCGATAATCCTATCTCCCTGAA
1 GCAAATCTTATCCT-CCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCACTGAA
* * * *
27058502 GTTGCAGTGGAGCGGATCAAAACCTTGGATCTTATCTCTTTGAAGTTATAGAGAGCTGATCGCGT
65 GTTGCAGTGGAGCGGATCAAAACCTTGGATCTTATCTCTCTGAAGTTACAGAGAGCAGATCGCAT
* * * *
27058567 CTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACAAGTCTTATCCTCCTGAAGT
130 CTAATCTTATCTCCCTAAAGTTGCAATGGAGCAGACTAAGCAAACAAGTCTTATCCTCCTGAAGT
27058632 TGCAGTGAG
195 TGCAGTGAG
27058641 ACAGGCTAAA
Statistics
Matches: 182, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
216 2 0.01
217 180 0.99
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (217 bp):
GCAAATCTTATCCTCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCACTGAAG
TTGCAGTGGAGCGGATCAAAACCTTGGATCTTATCTCTCTGAAGTTACAGAGAGCAGATCGCATC
TAATCTTATCTCCCTAAAGTTGCAATGGAGCAGACTAAGCAAACAAGTCTTATCCTCCTGAAGTT
GCAGTGAGGTAGACTGAAGATG
Found at i:27058655 original size:44 final size:44
Alignment explanation
Indices: 27058569--27058684 Score: 132
Period size: 44 Copynumber: 2.7 Consensus size: 44
27058559 GATCGCGTCT
*
27058569 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAACA
*
27058613 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGACAGGCTAAATAAACTA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAG-CAGACTAAATAAAC-A
* * *
27058658 A-TCCTGTCTCCCT-AAGTTGTAGTGGAG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAG
27058685 TGGATTAGAG
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
43 13 0.21
44 46 0.74
45 3 0.05
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (44 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAACA
Found at i:27059021 original size:19 final size:19
Alignment explanation
Indices: 27058993--27059056 Score: 101
Period size: 19 Copynumber: 3.3 Consensus size: 19
27058983 AATTTTCGAG
*
27058993 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27059012 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27059031 GACATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
27059052 GATAT
1 GATAT
27059057 ATACAATCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 23 0.55
21 19 0.45
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:27059078 original size:24 final size:21
Alignment explanation
Indices: 27058994--27059069 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
27058984 ATTTTCGAGG
27058994 ATATACAATCTTAGATATG--
1 ATATACAATCTTAGATATGAT
* *
27059013 ATATGCAATCTTAGATATGAC
1 ATATACAATCTTAGATATGAT
*
27059034 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
27059055 ATATACAATCTTAGA
1 ATATACAATCTTAGA
27059070 AGATATGATT
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
19 18 0.35
21 34 0.65
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.36
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:27059375 original size:21 final size:21
Alignment explanation
Indices: 27059349--27059399 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
27059339 CGAATTTTAT
27059349 ATTACAAGAAATGACTAGATA
1 ATTACAAGAAATGACTAGATA
27059370 ATTACAAGAAATGACTAGATA
1 ATTACAAGAAATGACTAGATA
27059391 ATTACAAGA
1 ATTACAAGA
27059400 GAGGGAAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.53, C:0.10, G:0.14, T:0.24
Consensus pattern (21 bp):
ATTACAAGAAATGACTAGATA
Found at i:27063516 original size:20 final size:18
Alignment explanation
Indices: 27063493--27063531 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
27063483 ACCTTGTGTG
*
27063493 TTTAAGCATGATTAATATGA
1 TTTAAGAATG-TT-ATATGA
27063513 TTTAAGAATGTTATATGA
1 TTTAAGAATGTTATATGA
27063531 T
1 T
27063532 ATGTTTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 2 0.11
20 9 0.50
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (18 bp):
TTTAAGAATGTTATATGA
Found at i:27066961 original size:12 final size:13
Alignment explanation
Indices: 27066935--27066959 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27066925 TGAAAGCATA
27066935 AGAGAAAAGGGGG
1 AGAGAAAAGGGGG
27066948 AGAGAAAAGGGG
1 AGAGAAAAGGGG
27066960 AGTTTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (13 bp):
AGAGAAAAGGGGG
Found at i:27067571 original size:21 final size:20
Alignment explanation
Indices: 27067545--27067617 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 20
27067535 TATTATCATT
27067545 TATTATTATCATTATTCATAA
1 TATTATTAT-ATTATTCATAA
* *
27067566 TATTA-T-TGTTATTTATAA
1 TATTATTATATTATTCATAA
* *
27067584 TATTATTATTTTATTTATCATAC
1 TATTATTATATTA--T-TCATAA
27067607 TATTATTATAT
1 TATTATTATAT
27067618 GATAGTTTCG
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
18 14 0.34
19 2 0.05
20 5 0.12
21 5 0.12
22 1 0.02
23 14 0.34
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.59
Consensus pattern (20 bp):
TATTATTATATTATTCATAA
Found at i:27067590 original size:18 final size:18
Alignment explanation
Indices: 27067556--27067590 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
27067546 ATTATTATCA
27067556 TTATTCATAATATTATTG
1 TTATTCATAATATTATTG
*
27067574 TTATTTATAATATTATT
1 TTATTCATAATATTATT
27067591 ATTTTATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (18 bp):
TTATTCATAATATTATTG
Found at i:27075228 original size:39 final size:37
Alignment explanation
Indices: 27075161--27075253 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
27075151 ACCAGAATGG
* *
27075161 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
27075200 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
27075237 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
27075254 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:27075450 original size:23 final size:24
Alignment explanation
Indices: 27075429--27075473 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
27075419 CACTTTCAAT
* *
27075429 TCAATCATT-TTTC-CACATTCAA
1 TCAATAATTATTTCACAAATTCAA
27075451 TCAATAATTATTTCACAAATTCA
1 TCAATAATTATTTCACAAATTCA
27075474 CACATTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 4 0.21
24 7 0.37
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.40
Consensus pattern (24 bp):
TCAATAATTATTTCACAAATTCAA
Found at i:27075467 original size:22 final size:23
Alignment explanation
Indices: 27075423--27075473 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
27075413 TTCTCACACT
*
27075423 TTCAATTCAATCATTTTTCCACA
1 TTCAATTCAATAATTTTTCCACA
*
27075446 TTCAA-TCAATAATTATTTCACAAA
1 TTCAATTCAATAATT-TTTC-CACA
27075470 TTCA
1 TTCA
27075474 CACATTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 8 0.33
23 9 0.38
24 7 0.29
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (23 bp):
TTCAATTCAATAATTTTTCCACA
Found at i:27076377 original size:17 final size:16
Alignment explanation
Indices: 27076345--27076378 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
27076335 TTGGCTATTC
*
27076345 TGTTTCTTTCTTCTTT
1 TGTTTCTTTATTCTTT
27076361 TGTTTCTTTTATTCTTT
1 TGTTTC-TTTATTCTTT
27076378 T
1 T
27076379 ATTTTAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.03, C:0.15, G:0.06, T:0.76
Consensus pattern (16 bp):
TGTTTCTTTATTCTTT
Found at i:27076426 original size:14 final size:14
Alignment explanation
Indices: 27076367--27076417 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
27076357 CTTTTGTTTC
*
27076367 TTTTA-TTCTTTTA
1 TTTTATTTCCTTTA
* *
27076380 TTTTAACTTACTTTA
1 TTTT-ATTTCCTTTA
*
27076395 CTTTATTTCCTTTA
1 TTTTATTTCCTTTA
27076409 TTTTATTTC
1 TTTTATTTC
27076418 TTTTGTTTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
13 4 0.13
14 17 0.57
15 9 0.30
ACGTcount: A:0.18, C:0.14, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTTATTTCCTTTA
Found at i:27076586 original size:14 final size:17
Alignment explanation
Indices: 27076567--27076603 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 17
27076557 ATTTATTTCT
27076567 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
27076581 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
27076598 TAATAT
1 TAATAT
27076604 CCTTTATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.40
15 1 0.05
16 4 0.20
17 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:27077837 original size:13 final size:13
Alignment explanation
Indices: 27077819--27077851 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
27077809 CAAATTTTTT
27077819 AAAAGCACTTCTC
1 AAAAGCACTTCTC
*
27077832 AAAAGCACTTTTC
1 AAAAGCACTTCTC
27077845 AAAAGCA
1 AAAAGCA
27077852 ATGAAGAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.45, C:0.24, G:0.09, T:0.21
Consensus pattern (13 bp):
AAAAGCACTTCTC
Found at i:27079348 original size:14 final size:14
Alignment explanation
Indices: 27079329--27079371 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
27079319 TATTAATCTC
27079329 TAATAATATAATTT
1 TAATAATATAATTT
* *
27079343 TAATAA-AAAAATT
1 TAATAATATAATTT
*
27079356 TAATACTATAATTT
1 TAATAATATAATTT
27079370 TA
1 TA
27079372 TTTTAATAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (14 bp):
TAATAATATAATTT
Found at i:27080149 original size:3 final size:3
Alignment explanation
Indices: 27080141--27080172 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
27080131 CACACAAATA
27080141 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
27080173 AAGATCACCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:27082923 original size:15 final size:15
Alignment explanation
Indices: 27082899--27082932 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
27082889 AACAATTACG
*
27082899 ATAATGCGAGCAAAA
1 ATAATACGAGCAAAA
27082914 ATAATACGAGCAAAA
1 ATAATACGAGCAAAA
27082929 ATAA
1 ATAA
27082933 CAAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.59, C:0.12, G:0.15, T:0.15
Consensus pattern (15 bp):
ATAATACGAGCAAAA
Found at i:27082954 original size:17 final size:18
Alignment explanation
Indices: 27082929--27082966 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
27082919 ACGAGCAAAA
*
27082929 ATAACAAAAAT-AAATAT
1 ATAAAAAAAATCAAATAT
*
27082946 ATAAAAAAAATCAATTAT
1 ATAAAAAAAATCAAATAT
27082964 ATA
1 ATA
27082967 CAATAACAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (18 bp):
ATAAAAAAAATCAAATAT
Found at i:27094060 original size:22 final size:23
Alignment explanation
Indices: 27094013--27094071 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 23
27094003 AAAGCCAAGC
*
27094013 TATATACGAATAATTTTAAAGAAAA
1 TATATAC-AATAAATTT-AAGAAAA
27094038 TATATACAATAAATTT-AGAAAA
1 TATATACAATAAATTTAAGAAAA
*
27094060 TATTTAC-ATAAA
1 TATATACAATAAA
27094072 ATAATATGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 5 0.16
22 12 0.38
24 8 0.25
25 7 0.22
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (23 bp):
TATATACAATAAATTTAAGAAAA
Found at i:27100548 original size:90 final size:90
Alignment explanation
Indices: 27100395--27100624 Score: 363
Period size: 90 Copynumber: 2.6 Consensus size: 90
27100385 TTAAAATAAT
* *
27100395 TGTATT-ATTTCTTTAGAATGTTTGTATTTTTTTATATCTGTAAATTTAATGTAGTTGTTTAGGA
1 TGTATTAATTTC-TTAGAATGTTTGTATTTTTTTATATCTGTAAATTTAATATAGTTGTCTAGGA
27100459 TTTAAGGTTTCATTCTTATATTTTCG
65 TTTAAGGTTTCATTCTTATATTTTCG
* *
27100485 TGTATTAATTTCTTAGAATATTTGTATTTTTTTATATCTATAAATTTAATATAGTTGTCTAGGAT
1 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATATCTGTAAATTTAATATAGTTGTCTAGGAT
*
27100550 TTAAGGTTTCATTTTTATATTTTCG
66 TTAAGGTTTCATTCTTATATTTTCG
* ** *
27100575 TATATTAATTTCTTAGAATGTTTGTACCTTTTTGTATCTGTAAATTTAAT
1 TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATATCTGTAAATTTAAT
27100625 TTAATCTGTA
Statistics
Matches: 128, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
90 123 0.96
91 5 0.04
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (90 bp):
TGTATTAATTTCTTAGAATGTTTGTATTTTTTTATATCTGTAAATTTAATATAGTTGTCTAGGAT
TTAAGGTTTCATTCTTATATTTTCG
Found at i:27104819 original size:105 final size:105
Alignment explanation
Indices: 27104626--27104822 Score: 245
Period size: 105 Copynumber: 1.9 Consensus size: 105
27104616 AATGTTTAAA
* * * **
27104626 TGTAATACCATAACTGGGCTATGGTATTTTAATGAAAAGACCATAACTGGGTTATGGCACCTTGA
1 TGTAAGACCATAACTGGGCTATGGCATTCTAATGAAAAGACCATAACTGGGTTATGGCACCTCAA
**
27104691 ACGTAAGACCACGGTTGGACCATGGCAGTATAGATACATG
66 ACGTAAGACCACGGCAGGACCATGGCAGTATAGATACATG
* * *
27104731 TGTAAGACCATAGCTGGGCTATTGCATTCTGAT-AATAAGACCATAACTGGGTTATGGCA-CTAC
1 TGTAAGACCATAACTGGGCTATGGCATTCTAATGAA-AAGACCATAACTGGGTTATGGCACCT-C
* * *
27104794 AAATGTAAGACCATGGCAGGGCCATGGCA
64 AAACGTAAGACCACGGCAGGACCATGGCA
27104823 ATGCATGTGT
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
104 4 0.05
105 73 0.95
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.25
Consensus pattern (105 bp):
TGTAAGACCATAACTGGGCTATGGCATTCTAATGAAAAGACCATAACTGGGTTATGGCACCTCAA
ACGTAAGACCACGGCAGGACCATGGCAGTATAGATACATG
Found at i:27105572 original size:20 final size:20
Alignment explanation
Indices: 27105547--27105594 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
27105537 CTGCTTCTAA
27105547 GAAAATTTTTGAAATTTTGG
1 GAAAATTTTTGAAATTTTGG
27105567 GAAAATTTTTGAAATTTTGG
1 GAAAATTTTTGAAATTTTGG
27105587 GAAAATTT
1 GAAAATTT
27105595 CTTAAGTACC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44
Consensus pattern (20 bp):
GAAAATTTTTGAAATTTTGG
Found at i:27105840 original size:5 final size:5
Alignment explanation
Indices: 27105832--27105894 Score: 54
Period size: 6 Copynumber: 11.6 Consensus size: 5
27105822 TTTTTATTTT
*
27105832 TTTCG TTTCA TTTCCA TTTCCA TTTCCA TTTCA TTTACA TTTCCA TTTCA
1 TTTCA TTTCA TTT-CA TTT-CA TTT-CA TTTCA TTT-CA TTT-CA TTTCA
* *
27105882 TTTAA TTTAA TTT
1 TTTCA TTTCA TTT
27105895 TTTTCCATTT
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
5 26 0.49
6 27 0.51
ACGTcount: A:0.21, C:0.21, G:0.02, T:0.57
Consensus pattern (5 bp):
TTTCA
Found at i:27105849 original size:6 final size:6
Alignment explanation
Indices: 27105840--27105884 Score: 67
Period size: 6 Copynumber: 7.8 Consensus size: 6
27105830 TTTTTCGTTT
*
27105840 CATTTC CATTTC CATTTC CATTT- CATTTA CATTTC CATTT- CATTT
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
27105885 AATTTAATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
5 10 0.27
6 27 0.73
ACGTcount: A:0.20, C:0.27, G:0.00, T:0.53
Consensus pattern (6 bp):
CATTTC
Found at i:27105866 original size:17 final size:17
Alignment explanation
Indices: 27105840--27105889 Score: 75
Period size: 17 Copynumber: 2.9 Consensus size: 17
27105830 TTTTTCGTTT
*
27105840 CATTTCCATTTCCATTTC
1 CATTT-CATTTACATTTC
27105858 CATTTCATTTACATTTC
1 CATTTCATTTACATTTC
27105875 CATTTCATTTA-ATTT
1 CATTTCATTTACATTT
27105890 AATTTTTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 4 0.13
17 22 0.71
18 5 0.16
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.54
Consensus pattern (17 bp):
CATTTCATTTACATTTC
Found at i:27105867 original size:23 final size:22
Alignment explanation
Indices: 27105832--27105894 Score: 83
Period size: 23 Copynumber: 2.9 Consensus size: 22
27105822 TTTTTATTTT
* *
27105832 TTTCGTTTCATTTCCATTTCCA
1 TTTCATTTCATTTACATTTCCA
27105854 TTTCCATTTCATTTACATTTCCA
1 TTT-CATTTCATTTACATTTCCA
*
27105877 TTTCATTTAATTTA-ATTT
1 TTTCATTTCATTTACATTT
27105895 TTTTCCATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 4 0.11
22 13 0.35
23 20 0.54
ACGTcount: A:0.21, C:0.21, G:0.02, T:0.57
Consensus pattern (22 bp):
TTTCATTTCATTTACATTTCCA
Found at i:27105909 original size:21 final size:21
Alignment explanation
Indices: 27105879--27105932 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
27105869 CATTTCCATT
*
27105879 TCATTT-AATTTAATTTTTTTC
1 TCATTTAAATTT-ATTTATTTC
27105900 -CATTTAAATTTATTTATTTC
1 TCATTTAAATTTATTTATTTC
27105920 TCATTTCAAATTT
1 TCATTT-AAATTT
27105933 TTTTTCATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 13 0.45
21 10 0.34
22 6 0.21
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (21 bp):
TCATTTAAATTTATTTATTTC
Found at i:27105942 original size:17 final size:18
Alignment explanation
Indices: 27105920--27105966 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
27105910 TATTTATTTC
27105920 TCATTTCAAATTTT-TTT
1 TCATTTCAAATTTTGTTT
**
27105937 TCATTTCAGTTTTTGTTT
1 TCATTTCAAATTTTGTTT
27105955 TCATTT-AAATTT
1 TCATTTCAAATTT
27105967 ATAATTTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 16 0.64
18 9 0.36
ACGTcount: A:0.21, C:0.11, G:0.04, T:0.64
Consensus pattern (18 bp):
TCATTTCAAATTTTGTTT
Found at i:27106017 original size:5 final size:5
Alignment explanation
Indices: 27105988--27106104 Score: 67
Period size: 5 Copynumber: 21.4 Consensus size: 5
27105978 TCATTTAAAC
* *
27105988 TTTCA TTCCA TTTCA TAATCA --TCA TTTCA TTTCA TTTCA TATTCA TTTAACA
1 TTTCA TTTCA TTTCA T-TTCA TTTCA TTTCA TTTCA TTTCA T-TTCA TTT--CA
* * *
27106040 TTTCA TATTCA TTACAAA TTACA TTTCA TTTTA TATTCATA TTTCA TTTAACA
1 TTTCA T-TTCA TTTC--A TTTCA TTTCA TTTCA T-TTC--A TTTCA TTT--CA
27106093 TTTCA TTTCA TT
1 TTTCA TTTCA TT
27106105 ATTTTTTTTT
Statistics
Matches: 91, Mismatches: 7, Indels: 28
0.72 0.06 0.22
Matches are distributed among these distances:
3 3 0.03
5 53 0.58
6 15 0.16
7 18 0.20
8 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.00, T:0.52
Consensus pattern (5 bp):
TTTCA
Found at i:27106017 original size:24 final size:24
Alignment explanation
Indices: 27105988--27106033 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
27105978 TCATTTAAAC
27105988 TTTCATTCCATTTCATAATCATCA
1 TTTCATTCCATTTCATAATCATCA
* *
27106012 TTTCATTTCATTTCATATTCAT
1 TTTCATTCCATTTCATAATCAT
27106034 TTAACATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.22, G:0.00, T:0.52
Consensus pattern (24 bp):
TTTCATTCCATTTCATAATCATCA
Found at i:27106035 original size:52 final size:52
Alignment explanation
Indices: 27105976--27106105 Score: 167
Period size: 52 Copynumber: 2.5 Consensus size: 52
27105966 TATAATTTAT
* *
27105976 TTTCATTTAA-ACTTTCATTCCATTTCATAATCATCATTTCATTTCAT-TTCATA
1 TTTCATTTAACA-TTTCATTTCATTACA-AATCA-CATTTCATTTCATATTCATA
* *
27106029 -TTCATTTAACATTTCATATTCATTACAAATTACATTTCATTTTATATTCATA
1 TTTCATTTAACATTTCAT-TTCATTACAAATCACATTTCATTTCATATTCATA
27106081 TTTCATTTAACATTTCATTTCATTA
1 TTTCATTTAACATTTCATTTCATTA
27106106 TTTTTTTTTC
Statistics
Matches: 69, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
51 12 0.17
52 32 0.46
53 25 0.36
ACGTcount: A:0.31, C:0.18, G:0.00, T:0.52
Consensus pattern (52 bp):
TTTCATTTAACATTTCATTTCATTACAAATCACATTTCATTTCATATTCATA
Found at i:27106041 original size:18 final size:17
Alignment explanation
Indices: 27106009--27106104 Score: 83
Period size: 18 Copynumber: 5.6 Consensus size: 17
27105999 TTCATAATCA
27106009 TCATTTCATTT--CATT
1 TCATTTCATTTAACATT
27106024 TCATATTCATTTAACATT
1 TCAT-TTCATTTAACATT
*
27106042 TCATATTCA-TTACAAATT
1 TCAT-TTCATTTA-ACATT
* * *
27106060 ACATTTCATTTTATA-T
1 TCATTTCATTTAACATT
27106076 TCATATTTCATTTAACATT
1 TC--ATTTCATTTAACATT
27106095 TCATTTCATT
1 TCATTTCATT
27106105 ATTTTTTTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
15 4 0.06
16 9 0.14
17 17 0.26
18 33 0.50
19 3 0.05
ACGTcount: A:0.30, C:0.17, G:0.00, T:0.53
Consensus pattern (17 bp):
TCATTTCATTTAACATT
Found at i:27106045 original size:23 final size:24
Alignment explanation
Indices: 27106015--27106103 Score: 78
Period size: 23 Copynumber: 3.6 Consensus size: 24
27106005 ATCATCATTT
27106015 CATTTCAT-TTCATATTCATTTAA
1 CATTTCATATTCATATTCATTTAA
27106038 CATTTCATATTCATTACAAATTACATTT--
1 CATTTCATATTCA-T----ATT-CATTTAA
*
27106066 CATTTTATATTCATATTTCATTTAA
1 CATTTCATATTCATA-TTCATTTAA
27106091 CATTTCAT-TTCAT
1 CATTTCATATTCAT
27106104 TATTTTTTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 19
0.72 0.03 0.25
Matches are distributed among these distances:
23 14 0.26
24 11 0.20
25 8 0.15
27 1 0.02
28 12 0.22
29 3 0.06
30 5 0.09
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.52
Consensus pattern (24 bp):
CATTTCATATTCATATTCATTTAA
Found at i:27106068 original size:35 final size:35
Alignment explanation
Indices: 27105976--27106104 Score: 86
Period size: 35 Copynumber: 3.7 Consensus size: 35
27105966 TATAATTTAT
* * * * * *
27105976 TTTCATTTAAACTTTCATTCCATTTCATAATCATCA
1 TTTCATTTAAAATTACATTTCATTTAACATTCAT-A
* *
27106012 TTTCATTT--CATTTCATATTCATTTAACATTTCATA
1 TTTCATTTAAAATTACAT-TTCATTTAACA-TTCATA
* *
27106047 -TTCA-TTACAAATTACATTTCATTTTATATTCATA
1 TTTCATTTA-AAATTACATTTCATTTAACATTCATA
* *
27106081 TTTCATTTAACATTTCATTTCATT
1 TTTCATTTAAAATTACATTTCATT
27106105 ATTTTTTTTT
Statistics
Matches: 74, Mismatches: 12, Indels: 15
0.73 0.12 0.15
Matches are distributed among these distances:
33 2 0.03
34 16 0.22
35 35 0.47
36 21 0.28
ACGTcount: A:0.30, C:0.18, G:0.00, T:0.52
Consensus pattern (35 bp):
TTTCATTTAAAATTACATTTCATTTAACATTCATA
Found at i:27106224 original size:22 final size:25
Alignment explanation
Indices: 27106194--27106242 Score: 68
Period size: 22 Copynumber: 2.1 Consensus size: 25
27106184 TTTATCTTTT
27106194 TTCAATTCA-ATTTTTTT-T-TCAA
1 TTCAATTCATATTTTTTTATATCAA
*
27106216 TTCATTTCATATTTTTTTATATCAA
1 TTCAATTCATATTTTTTTATATCAA
27106241 TT
1 TT
27106243 AGAAGTAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 8 0.35
23 8 0.35
24 1 0.04
25 6 0.26
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.61
Consensus pattern (25 bp):
TTCAATTCATATTTTTTTATATCAA
Found at i:27106519 original size:5 final size:5
Alignment explanation
Indices: 27106511--27106568 Score: 62
Period size: 5 Copynumber: 10.6 Consensus size: 5
27106501 CACCTTTTTT
*
27106511 TTTCA TTTCA TTTCA TTTGTA TTTCCA TTTCA TTTCAA TTTTCA TTTCCA
1 TTTCA TTTCA TTTCA TTT-CA TTT-CA TTTCA TTTC-A -TTTCA TTT-CA
27106561 TTTCA TTT
1 TTTCA TTT
27106569 AAATTATCTC
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
5 27 0.59
6 15 0.33
7 4 0.09
ACGTcount: A:0.19, C:0.19, G:0.02, T:0.60
Consensus pattern (5 bp):
TTTCA
Found at i:27106557 original size:23 final size:23
Alignment explanation
Indices: 27106514--27106573 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
27106504 CTTTTTTTTT
27106514 CATTTCATTTC-ATTTGTATTTC
1 CATTTCATTTCAATTTGTATTTC
27106536 CATTTCATTTCAATTT-TCATTTC
1 CATTTCATTTCAATTTGT-ATTTC
*
27106559 CATTTCATTTAAATT
1 CATTTCATTTCAATT
27106574 ATCTCTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
22 12 0.34
23 23 0.66
ACGTcount: A:0.23, C:0.18, G:0.02, T:0.57
Consensus pattern (23 bp):
CATTTCATTTCAATTTGTATTTC
Found at i:27106568 original size:17 final size:16
Alignment explanation
Indices: 27106511--27106568 Score: 64
Period size: 17 Copynumber: 3.5 Consensus size: 16
27106501 CACCTTTTTT
27106511 TTTCA-TTTCATTTCA
1 TTTCATTTTCATTTCA
* *
27106526 TTTGTATTTCCATTTCA
1 TTT-CATTTTCATTTCA
27106543 TTTCAATTTTCATTTCCA
1 TTTC-ATTTTCATTT-CA
27106561 TTTCATTT
1 TTTCATTT
27106569 AAATTATCTC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
15 3 0.09
16 1 0.03
17 25 0.71
18 6 0.17
ACGTcount: A:0.19, C:0.19, G:0.02, T:0.60
Consensus pattern (16 bp):
TTTCATTTTCATTTCA
Found at i:27106610 original size:24 final size:25
Alignment explanation
Indices: 27106560--27106619 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 25
27106550 TTTCATTTCC
27106560 ATTTCATTTAAA--TTATCTCTTTT
1 ATTTCATTTAAATTTTATCTCTTTT
*
27106583 -TTTCATTTAAATTTTAT-TTTTTT
1 ATTTCATTTAAATTTTATCTCTTTT
27106606 ATTTCATTTAAATT
1 ATTTCATTTAAATT
27106620 ATCTATCTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
22 11 0.33
23 5 0.15
24 17 0.52
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (25 bp):
ATTTCATTTAAATTTTATCTCTTTT
Found at i:27106742 original size:48 final size:48
Alignment explanation
Indices: 27106532--27106792 Score: 297
Period size: 48 Copynumber: 5.5 Consensus size: 48
27106522 TTCATTTGTA
* *
27106532 TTTCCA-TTTCATTTCAATTTTCATTTC-CATTTCATTTAAATTATCTCTTT
1 TTTCCATTTTAATTT-AATTTT--TTTCTCATTTCATTTAAATTATCT-TTC
* * * *
27106582 TTTTCATTTAAATTTTA-TTTTTT-T-ATTTCATTTAAATTATCTATC
1 TTTCCATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTC
* * *
27106627 TTCCCATTTTAATTTAATTTTTTTCTTATTTTATTTAAATTA--TTT-
1 TTTCCATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTC
*
27106672 TTTCCA-TTTACATTGAATTTTTTTCTCATTTCATTTAAATTATCTTTC
1 TTTCCATTTTA-ATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTC
27106720 TTTCCATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTC
1 TTTCCATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTC
* **
27106768 TTTCTATTTTAATTTACGTTTTTTC
1 TTTCCATTTTAATTTAATTTTTTTC
27106793 ATATTAATTT
Statistics
Matches: 181, Mismatches: 20, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
44 4 0.02
45 47 0.26
46 26 0.14
47 7 0.04
48 78 0.43
49 7 0.04
50 6 0.03
51 6 0.03
ACGTcount: A:0.23, C:0.14, G:0.01, T:0.62
Consensus pattern (48 bp):
TTTCCATTTTAATTTAATTTTTTTCTCATTTCATTTAAATTATCTTTC
Found at i:27106760 original size:22 final size:22
Alignment explanation
Indices: 27106505--27106760 Score: 136
Period size: 22 Copynumber: 11.1 Consensus size: 22
27106495 TCATTTCACC
* *
27106505 TTTTTTTTTCATTTCATTT-CA
1 TTTTTTTCTCATTTCATTTAAA
*
27106526 TTTGTATTTC-CATTTCATTTCAA
1 TTT-T-TTTCTCATTTCATTTAAA
27106549 TTTTCATTTC-CATTTCATTTAAA
1 TTTT--TTTCTCATTTCATTTAAA
27106572 TTATCTCTTT-T--TTTCATTTAAA
1 TT-T-T-TTTCTCATTTCATTTAAA
* *
27106594 TTTTATTTTTTTATTTCATTTAAA
1 -TTT-TTTTCTCATTTCATTTAAA
* *
27106618 TTATCTATCTTCCCATTTTAATTT-AA
1 TT-T-T-T-TTCTCA-TTTCATTTAAA
* *
27106644 TTTTTTTCTTATTTTATTTAAA
1 TTTTTTTCTCATTTCATTTAAA
*
27106666 TTATTTTT-TCCATTTACA-TTGAA
1 TT-TTTTTCT-CATTT-CATTTAAA
27106689 TTTTTTTCTCATTTCATTTAAA
1 TTTTTTTCTCATTTCATTTAAA
* *
27106711 TTATCTTTCTTTCCATTTTAATTT-AA
1 TT-T-TTT-TCT-CA-TTTCATTTAAA
27106737 TTTTTTTCTCATTTCATTTAAA
1 TTTTTTTCTCATTTCATTTAAA
27106759 TT
1 TT
27106761 ATCTTTCTTT
Statistics
Matches: 187, Mismatches: 21, Indels: 53
0.72 0.08 0.20
Matches are distributed among these distances:
21 22 0.12
22 57 0.30
23 50 0.27
24 25 0.13
25 6 0.03
26 13 0.07
27 14 0.07
ACGTcount: A:0.23, C:0.13, G:0.01, T:0.63
Consensus pattern (22 bp):
TTTTTTTCTCATTTCATTTAAA
Found at i:27106782 original size:27 final size:26
Alignment explanation
Indices: 27106704--27106783 Score: 89
Period size: 27 Copynumber: 3.2 Consensus size: 26
27106694 TTCTCATTTC
27106704 ATTTAAATTATCTTTCTTTCCATTTTA
1 ATTTAAATTATCTTTCTTT-CATTTTA
* *
27106731 ATTT-AATT-T-TTT-TCTCA-TTTC
1 ATTTAAATTATCTTTCTTTCATTTTA
27106752 ATTTAAATTATCTTTCTTTCTATTTTA
1 ATTTAAATTATCTTTCTTTC-ATTTTA
27106779 ATTTA
1 ATTTA
27106784 CGTTTTTTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
21 7 0.16
22 6 0.14
23 3 0.07
24 6 0.14
25 4 0.09
26 5 0.12
27 12 0.28
ACGTcount: A:0.25, C:0.12, G:0.00, T:0.62
Consensus pattern (26 bp):
ATTTAAATTATCTTTCTTTCATTTTA
Found at i:27124943 original size:10 final size:10
Alignment explanation
Indices: 27124928--27124975 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
27124918 AAATAAATAG
27124928 TTAATTAATC
1 TTAATTAATC
*
27124938 TTAATTGATC
1 TTAATTAATC
27124948 TTAATTAAT-
1 TTAATTAATC
* *
27124957 TTAAATAACC
1 TTAATTAATC
27124967 TTTAATTAA
1 -TTAATTAA
27124976 CTAAGGTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
9 7 0.23
10 17 0.55
11 7 0.23
ACGTcount: A:0.42, C:0.08, G:0.02, T:0.48
Consensus pattern (10 bp):
TTAATTAATC
Found at i:27128198 original size:30 final size:30
Alignment explanation
Indices: 27128131--27128198 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
27128121 AAAAATTTTA
*** *
27128131 AAAAAATTATATATAAAAAATTTTAAAAACT
1 AAAAAA-TATATATAAAAAACCCTAAAAACC
* *
27128162 ATAAAATATATATAAAAAACCCTAAAATCC
1 AAAAAATATATATAAAAAACCCTAAAAACC
27128192 AAAAAAT
1 AAAAAAT
27128199 CCTAAACCAT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (30 bp):
AAAAAATATATATAAAAAACCCTAAAAACC
Found at i:27146922 original size:16 final size:16
Alignment explanation
Indices: 27146885--27146915 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
27146875 TGAATTATAA
27146885 TCTAATCCAATACACT
1 TCTAATCCAATACACT
27146901 TCTAATCCAATACAC
1 TCTAATCCAATACAC
27146916 CTTTAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.29
Consensus pattern (16 bp):
TCTAATCCAATACACT
Found at i:27148419 original size:18 final size:17
Alignment explanation
Indices: 27148391--27148425 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
27148381 ATTATTAAGA
*
27148391 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
27148408 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
27148426 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:27148512 original size:120 final size:120
Alignment explanation
Indices: 27148299--27148682 Score: 741
Period size: 120 Copynumber: 3.2 Consensus size: 120
27148289 NNNNNNNNNN
*
27148299 AATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAA
1 AATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAA
*
27148364 TTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAA
66 TTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAA
27148419 AATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAA
1 AATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAA
*
27148484 TTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTAA
66 TTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAA
27148539 AATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAA
1 AATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAA
27148604 TTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAA
66 TTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAA
27148659 AATATATTTAATAATAATTATGTT
1 AATATATTTAATAATAATTATGTT
27148683 TAAATATGAT
Statistics
Matches: 260, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 260 1.00
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
AATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAA
TTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAA
Found at i:27148539 original size:18 final size:17
Alignment explanation
Indices: 27148511--27148545 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
27148501 ATTATTAAGA
*
27148511 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
27148528 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
27148546 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:27148659 original size:18 final size:17
Alignment explanation
Indices: 27148631--27148665 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
27148621 ATTATTAAGA
*
27148631 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
27148648 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
27148666 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:27148925 original size:16 final size:16
Alignment explanation
Indices: 27148904--27148939 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
27148894 GATTTGCTAT
27148904 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
27148920 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
27148936 TACA
1 TACA
27148940 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:27151109 original size:22 final size:21
Alignment explanation
Indices: 27151059--27151112 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
27151049 TCATGGAAAT
* *
27151059 TATACAATTAACAAACAATTAA
1 TATACAATTTA-AAACAATAAA
27151081 T-T-CAATTTAAAACATATAAA
1 TATACAATTTAAAACA-ATAAA
27151101 TATACAATTTAA
1 TATACAATTTAA
27151113 TTACACGAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 5 0.19
20 11 0.41
21 2 0.07
22 9 0.33
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (21 bp):
TATACAATTTAAAACAATAAA
Found at i:27153864 original size:30 final size:30
Alignment explanation
Indices: 27153810--27153866 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
27153800 AATTATTTTT
* *
27153810 AATAACTTTAATATTTTTTAATAATTTTGA
1 AATAAATTTAATATTTTGTAATAATTTTGA
27153840 AATAAATTTATATATTTTGT-ATAATTT
1 AATAAATTTA-ATATTTTGTAATAATTT
27153867 GTTTATAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 16 0.67
31 8 0.33
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (30 bp):
AATAAATTTAATATTTTGTAATAATTTTGA
Found at i:27159246 original size:3 final size:3
Alignment explanation
Indices: 27159233--27159261 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
27159223 TATGAGATGG
27159233 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
27159262 TAGTTTATCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:27163523 original size:28 final size:28
Alignment explanation
Indices: 27163475--27163531 Score: 66
Period size: 28 Copynumber: 2.0 Consensus size: 28
27163465 ATGTAATTTA
27163475 ATTAAGTTTTAATTAAGCATT-ATCTATT
1 ATTAAGTTTTAATTAAGCATTGAT-TATT
27163503 ATTAAG-TTTATATATAA-CATTGATTATT
1 ATTAAGTTTTA-AT-TAAGCATTGATTATT
27163531 A
1 A
27163532 CAAAATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
27 4 0.15
28 17 0.65
29 5 0.19
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.49
Consensus pattern (28 bp):
ATTAAGTTTTAATTAAGCATTGATTATT
Found at i:27163820 original size:14 final size:14
Alignment explanation
Indices: 27163803--27163841 Score: 71
Period size: 14 Copynumber: 2.9 Consensus size: 14
27163793 ATTTTCTTAA
27163803 AAAAATTATTTTTT
1 AAAAATTATTTTTT
27163817 AAAAATTATTTTTT
1 AAAAATTATTTTTT
27163831 -AAAATTATTTT
1 AAAAATTATTTT
27163842 AAGTCAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 11 0.44
14 14 0.56
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
AAAAATTATTTTTT
Found at i:27163820 original size:16 final size:16
Alignment explanation
Indices: 27163793--27163834 Score: 61
Period size: 14 Copynumber: 2.7 Consensus size: 16
27163783 GAATGTATTA
27163793 ATTTTCTTAAAAAAATT
1 ATTTT-TTAAAAAAATT
27163810 ATTTTTT--AAAAATT
1 ATTTTTTAAAAAAATT
27163824 ATTTTTTAAAA
1 ATTTTTTAAAA
27163835 TTATTTTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 14 0.61
16 4 0.17
17 5 0.22
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTTTTTAAAAAAATT
Found at i:27163828 original size:13 final size:13
Alignment explanation
Indices: 27163803--27163841 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
27163793 ATTTTCTTAA
27163803 AAAAATTATTTTTT
1 AAAAATTA-TTTTT
27163817 AAAAATTATTTTT
1 AAAAATTATTTTT
*
27163830 TAAAATTATTTT
1 AAAAATTATTTT
27163842 AAGTCAAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 16 0.67
14 8 0.33
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AAAAATTATTTTT
Found at i:27171884 original size:27 final size:26
Alignment explanation
Indices: 27171853--27171923 Score: 62
Period size: 27 Copynumber: 2.8 Consensus size: 26
27171843 TGATAAATAT
27171853 ATATTTATTATCATAAATATACTTTA
1 ATATTTATTATCATAAATATACTTTA
* *
27171879 ACTA-TTATATAACATAAA-ATAAGTTTA
1 A-TATTTAT-TATCATAAATAT-ACTTTA
27171906 ATATTTA--AT-ATAAATATA
1 ATATTTATTATCATAAATATA
27171924 TTAGAAACTA
Statistics
Matches: 37, Mismatches: 3, Indels: 13
0.70 0.06 0.25
Matches are distributed among these distances:
23 6 0.16
24 3 0.08
26 9 0.24
27 19 0.51
ACGTcount: A:0.49, C:0.06, G:0.01, T:0.44
Consensus pattern (26 bp):
ATATTTATTATCATAAATATACTTTA
Found at i:27172483 original size:20 final size:21
Alignment explanation
Indices: 27172447--27172487 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
27172437 TTATACATTT
27172447 AAAATCAAAATAAATATATAA
1 AAAATCAAAATAAATATATAA
*
27172468 AAAATCAAAA-ATATATATAA
1 AAAATCAAAATAAATATATAA
27172488 TCTAGAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAATCAAAATAAATATATAA
Found at i:27172515 original size:19 final size:20
Alignment explanation
Indices: 27172474--27172527 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
27172464 ATAAAAAATC
27172474 AAAAATATATATAATCTAGAA
1 AAAAATATATA-AATCTAGAA
* *
27172495 AAAAACATATAAAT-TATAA
1 AAAAATATATAAATCTAGAA
*
27172514 AAATATATATAAAT
1 AAAAATATATAAAT
27172528 AAAGTTTACA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 16 0.55
20 3 0.10
21 10 0.34
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.30
Consensus pattern (20 bp):
AAAAATATATAAATCTAGAA
Found at i:27188971 original size:22 final size:21
Alignment explanation
Indices: 27188919--27188972 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
27188909 TCATGGCAAT
*
27188919 TATACAATTCACAAACAAATAA
1 TATACAATTTA-AAACAAATAA
*
27188941 T-T-CAATTTAAAACATATAAA
1 TATACAATTTAAAACAAAT-AA
27188961 TATACAATTTAA
1 TATACAATTTAA
27188973 TTACACGAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 7 0.26
20 9 0.33
21 2 0.07
22 9 0.33
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (21 bp):
TATACAATTTAAAACAAATAA
Found at i:27194465 original size:29 final size:30
Alignment explanation
Indices: 27194412--27194471 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
27194402 TCCGAGACTT
*
27194412 GGGGCAAAAATGTAATTATGTAAAAATTTA
1 GGGGCAAAAATGTAATTATGTAAAAAGTTA
* *
27194442 GGGGCAAAATTGTAATTTTG-AAAAAGTTA
1 GGGGCAAAAATGTAATTATGTAAAAAGTTA
27194471 G
1 G
27194472 AGTCGAGGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.30
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGTAAAAAGTTA
Found at i:27194699 original size:13 final size:13
Alignment explanation
Indices: 27194681--27194712 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
27194671 TTTCCAGCAA
27194681 TTATGAATTTATT
1 TTATGAATTTATT
27194694 TTATGAATTTATT
1 TTATGAATTTATT
*
27194707 TGATGA
1 TTATGA
27194713 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:27194887 original size:51 final size:51
Alignment explanation
Indices: 27194811--27195045 Score: 470
Period size: 51 Copynumber: 4.6 Consensus size: 51
27194801 GGGTAAAGAG
27194811 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
27194862 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
27194913 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
27194964 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
27195015 ATCCCATGTAAGACCATGTCTGGGACATGGC
1 ATCCCATGTAAGACCATGTCTGGGACATGGC
27195046 TTTGGCATGT
Statistics
Matches: 184, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 184 1.00
ACGTcount: A:0.29, C:0.27, G:0.26, T:0.18
Consensus pattern (51 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCATCACGAGAAC
Found at i:27197322 original size:50 final size:50
Alignment explanation
Indices: 27197198--27197446 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
27197188 GATAATAACA
* * ** * *
27197198 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
27197249 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
27197299 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
27197349 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
27197404 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
27197447 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:27197376 original size:100 final size:104
Alignment explanation
Indices: 27197197--27197446 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
27197187 TGATAATAAC
**
27197197 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
27197262 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
27197299 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
27197362 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
27197404 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
27197447 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:27197562 original size:13 final size:13
Alignment explanation
Indices: 27197541--27197572 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
27197531 GCTTGGATCA
*
27197541 TCATCAAATAAAT
1 TCATAAAATAAAT
27197554 TCATAAAATAAAT
1 TCATAAAATAAAT
27197567 TCATAA
1 TCATAA
27197573 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:27197819 original size:30 final size:30
Alignment explanation
Indices: 27197784--27197841 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
27197774 CCTCGACTCT
*
27197784 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
27197814 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
27197842 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:27210908 original size:14 final size:12
Alignment explanation
Indices: 27210877--27210924 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
27210867 ATAAGAATTC
27210877 TAAAAAATATAAA
1 TAAAAAAT-TAAA
27210890 -AAAAAATTAAA
1 TAAAAAATTAAA
*
27210901 TCATAAAAATTCAA
1 T-A-AAAAATTAAA
27210915 TAAAAAATTA
1 TAAAAAATTA
27210925 TATATATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
11 4 0.13
12 14 0.47
13 2 0.07
14 10 0.33
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (12 bp):
TAAAAAATTAAA
Done.