Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr11
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61124829
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1263459 characters in sequence are not A, C, G, or T
File 103 of 205
Found at i:30367150 original size:44 final size:44
Alignment explanation
Indices: 30367100--30367189 Score: 126
Period size: 44 Copynumber: 2.0 Consensus size: 44
30367090 TAAATTTAAT
* * * *
30367100 TTAAATTCTAATTACTTTTAAATGTGTAGTTATCACAACTTCTA
1 TTAAATTATAATTACTTTTAAATATATAATTATCACAACTTCTA
* *
30367144 TTAAATTATAATTATTTTTAAATATATAATTATCACAACTTTTA
1 TTAAATTATAATTACTTTTAAATATATAATTATCACAACTTCTA
30367188 TT
1 TT
30367190 TTATTTCAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.49
Consensus pattern (44 bp):
TTAAATTATAATTACTTTTAAATATATAATTATCACAACTTCTA
Found at i:30367583 original size:17 final size:17
Alignment explanation
Indices: 30367543--30367584 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
30367533 TGCTAAATTG
*
30367543 TTAAAATAGTATTAAAA
1 TTAAAATTGTATTAAAA
30367560 TTAAAATTGTATT-AAA
1 TTAAAATTGTATTAAAA
30367576 TTATAAATT
1 TTA-AAATT
30367585 ATAAAAGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 6 0.26
17 17 0.74
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (17 bp):
TTAAAATTGTATTAAAA
Found at i:30369820 original size:20 final size:20
Alignment explanation
Indices: 30369795--30369843 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
30369785 TAACGTATTG
*
30369795 ATACTTTGTAGAAGGTACCA
1 ATACTTTGTAAAAGGTACCA
* *
30369815 ATACTTTATAAAAGGTATCA
1 ATACTTTGTAAAAGGTACCA
30369835 ATACCTTTG
1 ATA-CTTTG
30369844 ATTTTTGTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (20 bp):
ATACTTTGTAAAAGGTACCA
Found at i:30379319 original size:219 final size:217
Alignment explanation
Indices: 30378941--30379359 Score: 716
Period size: 219 Copynumber: 1.9 Consensus size: 217
30378931 GACATCAAAG
* * * *
30378941 CCTAACAGTAGCCATCTGCAATATAGAATACTAAAGCAATTGACATCTGAAACAAACACAACCCA
1 CCTAACACTAGCCATCAGCAATACAGAATACTAAAGCAACTGACATCTGAAACAAACACAACCCA
30379006 CTTCCAACGATTTTTTTTTTTTTTTGCAAAATGCATTATCTTTTATTTTTCTCATTTATGTCATT
66 CTTCCAACGATTTTTTTTTTTTTTTGCAAAATGCATTATCTTTTATTTTTCTCATTTATGTCATT
*
30379071 CCAACACTTCTTCCTAATAAATGTTCAAGAAAAGGAAATTCTTCATGTCATTCAGCAATTTGTCA
131 CCAACACTTCTTCCTAATAAATGTTCAAGAAAAGGAAATTCTTAATGTCATTCAGCAA-TTGTCA
30379136 GCAAGAATATGCGGCCATGGAAA
195 GCAAGAATATGCGGCCATGGAAA
* * *
30379159 CCTAACACTAGCCGTCAGCAATACAGAATACCT-AAGCAACTGACACATCTGAAACTATCACAAC
1 CCTAACACTAGCCATCAGCAATACAGAATA-CTAAAGCAACTG--ACATCTGAAACAAACACAAC
30379223 CCACTTCCAACGA-TTTTTTTTTTTTTTGCAAAATGCATTATCTTTTATTTTTCTCATTTATGTC
63 CCACTTCCAACGATTTTTTTTTTTTTTTGCAAAATGCATTATCTTTTATTTTTCTCATTTATGTC
30379287 ATTCCAACACTTCTTCCTAATAAATGTTCAAGAAAAGGAAATTCTTAATGTCATTCAGCAATTGT
128 ATTCCAACACTTCTTCCTAATAAATGTTCAAGAAAAGGAAATTCTTAATGTCATTCAGCAATTGT
30379352 CAGCAAGA
193 CAGCAAGA
30379360 CTGATGCTCT
Statistics
Matches: 190, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
218 46 0.24
219 113 0.59
220 31 0.16
ACGTcount: A:0.34, C:0.22, G:0.11, T:0.34
Consensus pattern (217 bp):
CCTAACACTAGCCATCAGCAATACAGAATACTAAAGCAACTGACATCTGAAACAAACACAACCCA
CTTCCAACGATTTTTTTTTTTTTTTGCAAAATGCATTATCTTTTATTTTTCTCATTTATGTCATT
CCAACACTTCTTCCTAATAAATGTTCAAGAAAAGGAAATTCTTAATGTCATTCAGCAATTGTCAG
CAAGAATATGCGGCCATGGAAA
Found at i:30387268 original size:21 final size:21
Alignment explanation
Indices: 30387244--30387390 Score: 78
Period size: 21 Copynumber: 6.9 Consensus size: 21
30387234 TATACATTGC
*
30387244 ATTATGGATAAACCACCATTA
1 ATTATGGATAAACCACCAGTA
*** ** *
30387265 ATTACAAATAAACTGCTAGTA
1 ATTATGGATAAACCACCAGTA
*
30387286 AGTTATGGATAAACCACCAGGA
1 A-TTATGGATAAACCACCAGTA
**** ***
30387308 ATTGCAAATAAACTGTCAGTA
1 ATTATGGATAAACCACCAGTA
*
30387329 AGTTGTGGATAAACCACCAGTA
1 A-TTATGGATAAACCACCAGTA
* * ***
30387351 ATTTTAGATAAATTGCCAGTA
1 ATTATGGATAAACCACCAGTA
30387372 AGTTATGGATAAACCACCA
1 A-TTATGGATAAACCACCA
30387391 CTAGTTGCAA
Statistics
Matches: 85, Mismatches: 38, Indels: 5
0.66 0.30 0.04
Matches are distributed among these distances:
21 44 0.52
22 41 0.48
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (21 bp):
ATTATGGATAAACCACCAGTA
Found at i:30387316 original size:43 final size:43
Alignment explanation
Indices: 30387245--30387502 Score: 264
Period size: 43 Copynumber: 6.0 Consensus size: 43
30387235 ATACATTGCA
* * *
30387245 TTATGGATAAACCACCATTAATTACAAATAAACTGCTAGTAAG
1 TTATGGATAAACCACCAGTAATTGCAAATAAACTGCCAGTAAG
* *
30387288 TTATGGATAAACCACCAGGAATTGCAAATAAACTGTCAGTAAG
1 TTATGGATAAACCACCAGTAATTGCAAATAAACTGCCAGTAAG
* ** * *
30387331 TTGTGGATAAACCACCAGTAATTTTAGATAAATTGCCAGTAAG
1 TTATGGATAAACCACCAGTAATTGCAAATAAACTGCCAGTAAG
* * * *
30387374 TTATGGATAAACCACCACTAGTTGCAAAAAAAACTACCAGTAAG
1 TTATGGATAAACCACCAGTAATTGC-AAATAAACTGCCAGTAAG
* * * * ** * * *
30387418 TTATGAATAAATCACTAGTAAGTATAGATAAATTGCCAGTAAT
1 TTATGGATAAACCACCAGTAATTGCAAATAAACTGCCAGTAAG
* * * *
30387461 TTGTGGATAAACCACCAATAATTGCAGATAAACTGTCAGTAA
1 TTATGGATAAACCACCAGTAATTGCAAATAAACTGCCAGTAA
30387503 CTTCCTCCTT
Statistics
Matches: 170, Mismatches: 44, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
43 139 0.82
44 31 0.18
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.27
Consensus pattern (43 bp):
TTATGGATAAACCACCAGTAATTGCAAATAAACTGCCAGTAAG
Found at i:30387448 original size:87 final size:87
Alignment explanation
Indices: 30387245--30387486 Score: 279
Period size: 87 Copynumber: 2.8 Consensus size: 87
30387235 ATACATTGCA
* * * * * * * **
30387245 TTATGGATAAACCACCATTAATTACAAATAAACTGCTAGTAAGTTATGGATAAACCACCAGGAAT
1 TTATGAATAAACCACCAGTAAGTATAGATAAATTGCCAGTAAGTTATGGATAAACCACCAATAAT
* **
30387310 TGC-AAATAAACTGTCAGTAAG
66 TGCAAAAAAAACTACCAGTAAG
* * * * * *
30387331 TTGTGGATAAACCACCAGTAATTTTAGATAAATTGCCAGTAAGTTATGGATAAACCACCACTAGT
1 TTATGAATAAACCACCAGTAAGTATAGATAAATTGCCAGTAAGTTATGGATAAACCACCAATAAT
30387396 TGCAAAAAAAACTACCAGTAAG
66 TGCAAAAAAAACTACCAGTAAG
* * * *
30387418 TTATGAATAAATCACTAGTAAGTATAGATAAATTGCCAGTAATTTGTGGATAAACCACCAATAAT
1 TTATGAATAAACCACCAGTAAGTATAGATAAATTGCCAGTAAGTTATGGATAAACCACCAATAAT
30387483 TGCA
66 TGCA
30387487 GATAAACTGT
Statistics
Matches: 132, Mismatches: 23, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
86 58 0.44
87 74 0.56
ACGTcount: A:0.42, C:0.16, G:0.15, T:0.27
Consensus pattern (87 bp):
TTATGAATAAACCACCAGTAAGTATAGATAAATTGCCAGTAAGTTATGGATAAACCACCAATAAT
TGCAAAAAAAACTACCAGTAAG
Found at i:30387477 original size:130 final size:129
Alignment explanation
Indices: 30387245--30387502 Score: 309
Period size: 130 Copynumber: 2.0 Consensus size: 129
30387235 ATACATTGCA
* * * * * *
30387245 TTATGGATAAACCACCATTAATTACAAATAAACTGCTAGTAAGTTATGGATAAACCACCAGGAAT
1 TTATGGATAAACCACCACTAATTACAAAAAAACTACCAGTAAGTTATGAATAAACCACCAGGAAG
* * * ** *
30387310 TGCAAATAAACTGTCAGTAAGTTGTGGATAAACCACCAGTAATTTTAGATAAATTGCCAGTAAG
66 TACAAATAAACTGCCAGTAAGTTGTGGATAAACCACCAATAATTGCAGATAAACTGCCAGTAAG
* * * * *
30387374 TTATGGATAAACCACCACTAGTTGCAAAAAAAACTACCAGTAAGTTATGAATAAATCACTAGTAA
1 TTATGGATAAACCACCACTAATTAC-AAAAAAACTACCAGTAAGTTATGAATAAACCACCAGGAA
* * * * *
30387439 GTATAGATAAATTGCCAGTAATTTGTGGATAAACCACCAATAATTGCAGATAAACTGTCAGTAA
65 GTACAAATAAACTGCCAGTAAGTTGTGGATAAACCACCAATAATTGCAGATAAACTGCCAGTAA
30387503 CTTCCTCCTT
Statistics
Matches: 106, Mismatches: 22, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
129 22 0.21
130 84 0.79
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.27
Consensus pattern (129 bp):
TTATGGATAAACCACCACTAATTACAAAAAAACTACCAGTAAGTTATGAATAAACCACCAGGAAG
TACAAATAAACTGCCAGTAAGTTGTGGATAAACCACCAATAATTGCAGATAAACTGCCAGTAAG
Found at i:30390052 original size:40 final size:40
Alignment explanation
Indices: 30389997--30390306 Score: 568
Period size: 40 Copynumber: 7.8 Consensus size: 40
30389987 GAGCATTGGA
30389997 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30390037 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30390077 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30390117 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30390157 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30390197 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
30390237 ATATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATT-ATGCGAGTTG
* * *
30390277 CTATACCCGGGTTAAGACCCGAAGGCAATT
1 ATATATCCGGGCTAAGACCCGAAGGCAATT
30390307 GTGCTTGCGG
Statistics
Matches: 264, Mismatches: 4, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
39 3 0.01
40 258 0.98
41 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:30391225 original size:28 final size:28
Alignment explanation
Indices: 30391177--30391230 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
30391167 GGAAGAAACA
* * *
30391177 AAACAATCATATGAGTCGTATTTTAACG
1 AAACAATCATATGAATAGTATATTAACG
30391205 AAACAATCATATGAATAGTATATTAA
1 AAACAATCATATGAATAGTATATTAA
30391231 GAGATATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.31
Consensus pattern (28 bp):
AAACAATCATATGAATAGTATATTAACG
Found at i:30399366 original size:21 final size:21
Alignment explanation
Indices: 30399341--30399386 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
30399331 AAGTCATTAG
*
30399341 AGATTGCTTGAAATCAGCTTT
1 AGATTGCTTGAAATCAGCTTC
*
30399362 AGATTGTTTGAAATCAGCTTC
1 AGATTGCTTGAAATCAGCTTC
30399383 AGAT
1 AGAT
30399387 AGACAGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (21 bp):
AGATTGCTTGAAATCAGCTTC
Found at i:30401067 original size:50 final size:52
Alignment explanation
Indices: 30400962--30401140 Score: 168
Period size: 50 Copynumber: 3.4 Consensus size: 52
30400952 GGGATGAGAC
* **
30400962 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGTTTATGAGAGGT
1 CCCACGTAAGACCATGTCTGGGACATGGCATTGG-A-TACCGAG--TATGAGAGGT
*
30401018 CCCACGTAAGACCATGTCTGGGACATGGCGTTGG-TACCGAG-ATGAGAGGT
1 CCCACGTAAGACCATGTCTGGGACATGGCATTGGATACCGAGTATGAGAGGT
* * * * * **
30401068 CCCCCGTAAGACTATGTCTGGGACACGGCATGGGA-ACTGA-TATGAGAACT
1 CCCACGTAAGACCATGTCTGGGACATGGCATTGGATACCGAGTATGAGAGGT
* * *
30401118 CTCATGTAAGACCATATCTGGGA
1 CCCACGTAAGACCATGTCTGGGA
30401141 TATAGTATCT
Statistics
Matches: 104, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
50 67 0.64
53 5 0.05
56 32 0.31
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (52 bp):
CCCACGTAAGACCATGTCTGGGACATGGCATTGGATACCGAGTATGAGAGGT
Found at i:30401431 original size:20 final size:20
Alignment explanation
Indices: 30401406--30401444 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
30401396 CGAGTTATTT
30401406 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
30401426 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
30401445 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:30413553 original size:7 final size:7
Alignment explanation
Indices: 30413536--30413571 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
30413526 GGTTGAACCC
30413536 ATCTC-T
1 ATCTCAT
30413542 ATCTCAT
1 ATCTCAT
30413549 ATCTCAT
1 ATCTCAT
30413556 ATCTCAT
1 ATCTCAT
30413563 ATCTCAT
1 ATCTCAT
30413570 AT
1 AT
30413572 AGATGCTCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 5 0.17
7 24 0.83
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (7 bp):
ATCTCAT
Found at i:30415230 original size:7 final size:7
Alignment explanation
Indices: 30415217--30415251 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
30415207 TTTTTCAATT
30415217 ATCCCTC
1 ATCCCTC
*
30415224 CTCCCTC
1 ATCCCTC
30415231 ATCCCTC
1 ATCCCTC
30415238 ATCCCTC
1 ATCCCTC
30415245 ATCCCTC
1 ATCCCTC
30415252 TCATCTCTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.11, C:0.60, G:0.00, T:0.29
Consensus pattern (7 bp):
ATCCCTC
Found at i:30421259 original size:46 final size:46
Alignment explanation
Indices: 30421207--30421300 Score: 163
Period size: 46 Copynumber: 2.0 Consensus size: 46
30421197 ATAGTGTGGC
*
30421207 GTTCATCATATACCAAGGTTCTTATCA-TCATTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTC-TTGATAGTGGGTCGAG
30421253 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
30421299 GT
1 GT
30421301 CTTTTCTTTG
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 44 0.96
47 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
Found at i:30421398 original size:12 final size:13
Alignment explanation
Indices: 30421374--30421399 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
30421364 AATCTCTATT
30421374 AATTCGAAAAAAA
1 AATTCGAAAAAAA
30421387 AATTCGAAAAAAA
1 AATTCGAAAAAAA
30421400 CTAGTTTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (13 bp):
AATTCGAAAAAAA
Found at i:30421461 original size:14 final size:14
Alignment explanation
Indices: 30421438--30421477 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
30421428 GATATCAAGT
*
30421438 TGAAAAAAAATTTTCG
1 TGAAAAAAAA--TTCA
30421454 TGAAAAAAAATTCA
1 TGAAAAAAAATTCA
30421468 TGAAAAAAAA
1 TGAAAAAAAA
30421478 AGAAGCTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.57
16 10 0.43
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.23
Consensus pattern (14 bp):
TGAAAAAAAATTCA
Found at i:30424692 original size:28 final size:28
Alignment explanation
Indices: 30424652--30424707 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
30424642 TAACAGAATA
30424652 GGCCTGCTAGTCTGGTGGATAAGTGGAG
1 GGCCTGCTAGTCTGGTGGATAAGTGGAG
30424680 GGCCTGCTAGTCTGGTGGATAAGTGGAG
1 GGCCTGCTAGTCTGGTGGATAAGTGGAG
30424708 TGTTGGTGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.18, C:0.14, G:0.43, T:0.25
Consensus pattern (28 bp):
GGCCTGCTAGTCTGGTGGATAAGTGGAG
Found at i:30437975 original size:25 final size:26
Alignment explanation
Indices: 30437933--30437986 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 26
30437923 TTCTACTAAA
*
30437933 TTTCAATTTTATTTAATTATTTAAT-T
1 TTTCAATTTTATTGAATTA-TTAATAT
30437959 TTTCAA-TTTATTGAATTATTAATAT
1 TTTCAATTTTATTGAATTATTAATAT
30437984 TTT
1 TTT
30437987 ATACTAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 15 0.58
26 6 0.23
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (26 bp):
TTTCAATTTTATTGAATTATTAATAT
Found at i:30442955 original size:19 final size:19
Alignment explanation
Indices: 30442896--30442956 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
30442886 GACTATGCCT
30442896 TTGTTTTGATATGAACTAA
1 TTGTTTTGATATGAACTAA
* * *
30442915 TCGTTTAT-TTAT-AAC-CA
1 TTGTTT-TGATATGAACTAA
30442932 TTGTTTTGATATGAACTAA
1 TTGTTTTGATATGAACTAA
30442951 TTGTTT
1 TTGTTT
30442957 ATTTATGCTT
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 1 0.03
17 9 0.28
18 6 0.19
19 15 0.47
20 1 0.03
ACGTcount: A:0.28, C:0.08, G:0.13, T:0.51
Consensus pattern (19 bp):
TTGTTTTGATATGAACTAA
Found at i:30442963 original size:19 final size:19
Alignment explanation
Indices: 30442905--30442963 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
30442895 TTTGTTTTGA
*
30442905 TATGAACTAATCGTTTATT
1 TATGAACTAATTGTTTATT
* *
30442924 TAT-AAC-CATTGTTT-TGA
1 TATGAACTAATTGTTTAT-T
30442941 TATGAACTAATTGTTTATT
1 TATGAACTAATTGTTTATT
30442960 TATG
1 TATG
30442964 CTTTTTGTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
16 1 0.03
17 9 0.29
18 6 0.19
19 14 0.45
20 1 0.03
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.49
Consensus pattern (19 bp):
TATGAACTAATTGTTTATT
Found at i:30455368 original size:49 final size:49
Alignment explanation
Indices: 30455313--30455407 Score: 190
Period size: 49 Copynumber: 1.9 Consensus size: 49
30455303 AATTCTAAAT
30455313 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
30455362 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
30455408 NNNNNNNNNN
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
Found at i:30458200 original size:75 final size:75
Alignment explanation
Indices: 30458111--30458252 Score: 191
Period size: 75 Copynumber: 1.9 Consensus size: 75
30458101 TATTAATTAA
* * * *
30458111 TTTTGGGAAAAATATAATTC-CTTTTTCTAAC-TTTCTATTTGTCTTCTCTATTAATAAGGGAAT
1 TTTTGGGAAAAATATAATTCTC-CTTTCTAACTTTTC-ATTTGCCTTCTATATTAATAAGAGAAT
30458174 AATCTTATATTC
64 AATCTTATATTC
*
30458186 TTTT-GGAAAGAATATAATTCTCCTTTCTAACTTTTCATTTGCCTTTTATATTAATAAGAGAATA
1 TTTTGGGAAA-AATATAATTCTCCTTTCTAACTTTTCATTTGCCTTCTATATTAATAAGAGAATA
30458250 ATC
65 ATC
30458253 ATGGTTTTCC
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
74 5 0.08
75 49 0.83
76 5 0.08
ACGTcount: A:0.31, C:0.13, G:0.09, T:0.46
Consensus pattern (75 bp):
TTTTGGGAAAAATATAATTCTCCTTTCTAACTTTTCATTTGCCTTCTATATTAATAAGAGAATAA
TCTTATATTC
Found at i:30466976 original size:32 final size:32
Alignment explanation
Indices: 30466765--30466982 Score: 177
Period size: 32 Copynumber: 6.7 Consensus size: 32
30466755 ATATAAATAC
* * * ** *
30466765 ATATACAAATGAATTCAGCAATAGGGGTATAC
1 ATATACAATTCAATTCGGCAATAGAAGTATAT
* * * * *
30466797 CTATACAGTTTAATTCGACAATATAAGTATAT
1 ATATACAATTCAATTCGGCAATAGAAGTATAT
*** *
30466829 ATATACAATTCAATTCAATAATATAAGTATAT
1 ATATACAATTCAATTCGGCAATAGAAGTATAT
*
30466861 ATATACAATTCAATTCAGCAATAGATGTAAGTATAT
1 ATATACAATTCAATTCGGCAAT--A-G-AAGTATAT
* * * *
30466897 ATTTACAATT-TAGTCGGCAATATAAGTATAT
1 ATATACAATTCAATTCGGCAATAGAAGTATAT
** *
30466928 ATATACAATTCAATTCGGCAATAGGTGTATAC
1 ATATACAATTCAATTCGGCAATAGAAGTATAT
*
30466960 CTATACAATTCAATTCGGCAATA
1 ATATACAATTCAATTCGGCAATA
30466983 AATAAAACAT
Statistics
Matches: 150, Mismatches: 31, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
31 17 0.11
32 106 0.71
33 1 0.01
34 1 0.01
35 8 0.05
36 17 0.11
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.33
Consensus pattern (32 bp):
ATATACAATTCAATTCGGCAATAGAAGTATAT
Found at i:30474283 original size:32 final size:31
Alignment explanation
Indices: 30474247--30474330 Score: 73
Period size: 32 Copynumber: 2.7 Consensus size: 31
30474237 ATCAAATCAA
30474247 CAATATATAAATACATATACAAGCCAATTCAG
1 CAATATATAAATACATATACAAGCCAATTC-G
* ** * **
30474279 CAATAGATGTATACCTATACAATTCAATTCG
1 CAATATATAAATACATATACAAGCCAATTCG
*
30474310 -AGA-ATATAAATATATATACAA
1 CA-ATATATAAATACATATACAA
30474331 TTCAGTTCGG
Statistics
Matches: 40, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
30 14 0.35
31 2 0.05
32 24 0.60
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (31 bp):
CAATATATAAATACATATACAAGCCAATTCG
Found at i:30474330 original size:30 final size:29
Alignment explanation
Indices: 30474294--30474469 Score: 121
Period size: 30 Copynumber: 5.9 Consensus size: 29
30474284 GATGTATACC
30474294 TATACAATTCAATTCGAGAATATAAATATA
1 TATACAATTCAATTCG-GAATATAAATATA
* *
30474324 TATACAATTCAGTTCGGCAATATAAGTATA
1 TATACAATTCAATTCGG-AATATAAATATA
* ** **
30474354 TATATAATTCAATTCGGCAATAGGTGTATACC
1 TATACAATTCAATTCGG-AATA--TAAATATA
* *
30474386 TATACAATTCAATTTGGCA-AT--ATATA
1 TATACAATTCAATTCGGAATATAAATATA
*
30474412 TAT--AATTCAATTCGACAATATAAGTATATATA
1 TATACAATTCAATTCG-GAATAT-A--A-ATATA
*
30474444 TATACAATTCAATTCGGCA-ATAAATA
1 TATACAATTCAATTCGGAATATAAATA
30474470 ACCATATATG
Statistics
Matches: 114, Mismatches: 19, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
24 10 0.09
25 1 0.01
26 8 0.07
28 4 0.04
29 2 0.02
30 47 0.41
31 2 0.02
32 28 0.25
33 1 0.01
34 11 0.10
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (29 bp):
TATACAATTCAATTCGGAATATAAATATA
Found at i:30474353 original size:62 final size:60
Alignment explanation
Indices: 30474251--30474369 Score: 148
Period size: 62 Copynumber: 1.9 Consensus size: 60
30474241 AATCAACAAT
*
30474251 ATATAAATACATATACAAGCCAATTCAGCAATAGATGTATACCTATACAATTCAATTCGAGA
1 ATATAAATACATATACAAGCCAATTCAGCAATAGAAGTATA--TATACAATTCAATTCGAGA
* ** * * * *
30474313 ATATAAATATATATACAATTCAGTTCGGCAATATAAGTATATATATAATTCAATTCG
1 ATATAAATACATATACAAGCCAATTCAGCAATAGAAGTATATATACAATTCAATTCG
30474370 GCAATAGGTG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
60 15 0.31
62 34 0.69
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (60 bp):
ATATAAATACATATACAAGCCAATTCAGCAATAGAAGTATATATACAATTCAATTCGAGA
Found at i:30474367 original size:92 final size:85
Alignment explanation
Indices: 30474271--30474454 Score: 242
Period size: 92 Copynumber: 2.1 Consensus size: 85
30474261 ATATACAAGC
*
30474271 CAATTCAGCAATAGATGTATACCTATACAATTCAATTCGAGAATATAAATATATATACAATTCAG
1 CAATTCAGCAATAGATGTATACCTATACAATTCAATTCG-GAA-AT--ATATATAT--AATTCAA
* *
30474336 TTCGGCAATATAAGTATATATATAATT
60 TTCGACAATATAAGTATATATAT-ATA
* * * *
30474363 CAATTCGGCAATAGGTGTATACCTATACAATTCAATTTGGCAATATATATATAATTCAATTCGAC
1 CAATTCAGCAATAGATGTATACCTATACAATTCAATTCGGAAATATATATATAATTCAATTCGAC
30474428 AATATAAGTATATATATATA
66 AATATAAGTATATATATATA
30474448 CAATTCA
1 CAATTCA
30474455 ATTCGGCAAT
Statistics
Matches: 84, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
85 8 0.10
86 28 0.33
88 8 0.10
90 2 0.02
91 2 0.02
92 36 0.43
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (85 bp):
CAATTCAGCAATAGATGTATACCTATACAATTCAATTCGGAAATATATATATAATTCAATTCGAC
AATATAAGTATATATATATA
Found at i:30474405 original size:32 final size:32
Alignment explanation
Indices: 30474257--30474407 Score: 141
Period size: 30 Copynumber: 4.8 Consensus size: 32
30474247 CAATATATAA
* ** *
30474257 ATACATATACAAGCCAATTCAGCAATAGATGT
1 ATACCTATACAATTCAATTCGGCAATAGATGT
* **
30474289 ATACCTATACAATTCAATTCGAG-AATATAAAT
1 ATACCTATACAATTCAATTCG-GCAATAGATGT
* * *
30474321 ATA--TATACAATTCAGTTCGGCAATATAAGT
1 ATACCTATACAATTCAATTCGGCAATAGATGT
* *
30474351 ATA--TATATAATTCAATTCGGCAATAGGTGT
1 ATACCTATACAATTCAATTCGGCAATAGATGT
*
30474381 ATACCTATACAATTCAATTTGGCAATA
1 ATACCTATACAATTCAATTCGGCAATA
30474408 TATATATAAT
Statistics
Matches: 99, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
29 1 0.01
30 51 0.52
32 46 0.46
33 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (32 bp):
ATACCTATACAATTCAATTCGGCAATAGATGT
Found at i:30474411 original size:56 final size:58
Alignment explanation
Indices: 30474294--30474465 Score: 167
Period size: 58 Copynumber: 3.0 Consensus size: 58
30474284 GATGTATACC
* * *
30474294 TATACAATTCAATTCGAGAATATAA--ATAT--ATATACAATTCAGTTCGGCAATATAAGTATA
1 TATATAATTCAATTCGACAATATAAGTATATACATATACAATTCAATTCGGC-----AA-TATA
* * * * *
30474354 TATATAATTCAATTCGGC-A-ATAGGTGTATACCTATACAATTCAATTTGGCAATATA
1 TATATAATTCAATTCGACAATATAAGTATATACATATACAATTCAATTCGGCAATATA
*
30474410 TATATAATTCAATTCGACAATATAAGTATATATATATACAATTCAATTCGGCAATA
1 TATATAATTCAATTCGACAATATAAGTATATACATATACAATTCAATTCGGCAATA
30474466 AATAACCATA
Statistics
Matches: 92, Mismatches: 14, Indels: 14
0.77 0.12 0.12
Matches are distributed among these distances:
56 21 0.23
57 3 0.03
58 33 0.36
59 1 0.01
60 18 0.20
62 16 0.17
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (58 bp):
TATATAATTCAATTCGACAATATAAGTATATACATATACAATTCAATTCGGCAATATA
Found at i:30474439 original size:24 final size:24
Alignment explanation
Indices: 30474386--30474433 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
30474376 GGTGTATACC
* * *
30474386 TATACAATTCAATTTGGCAATATA
1 TATATAATTCAATTCGACAATATA
30474410 TATATAATTCAATTCGACAATATA
1 TATATAATTCAATTCGACAATATA
30474434 AGTATATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (24 bp):
TATATAATTCAATTCGACAATATA
Found at i:30474477 original size:32 final size:31
Alignment explanation
Indices: 30474407--30474511 Score: 88
Period size: 34 Copynumber: 3.2 Consensus size: 31
30474397 ATTTGGCAAT
* * *
30474407 ATATATATAATTCAATTCGACAATATAAGTATAT
1 ATATATACAATTCAATTCGGCAATA-AA-TA-AC
30474441 ATATATACAATTCAATTCGGCAATAAATAACC
1 ATATATACAATTCAATTCGGCAATAAATAA-C
* *
30474473 ATATAT-GAA-TCAAATTCGGCAATATATAAAAC
1 ATATATACAATTC-AATTCGGCAATA-A-ATAAC
30474505 ATATATA
1 ATATATA
30474512 TATTTATATT
Statistics
Matches: 61, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
30 2 0.03
31 15 0.25
32 16 0.26
33 5 0.08
34 23 0.38
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (31 bp):
ATATATACAATTCAATTCGGCAATAAATAAC
Found at i:30482658 original size:436 final size:436
Alignment explanation
Indices: 30481785--30482641 Score: 1238
Period size: 436 Copynumber: 2.0 Consensus size: 436
30481775 GACACCAAAA
*
30481785 TGTCATCTATGAAAACAACCATAAATTGATCCAAGTACAAATGGAATACTCGATTTATTAGATAC
1 TGTCATCTATGAAAACAACCACAAATTGATCCAAGTACAAATGGAATACTCGATTTATTAGATAC
* * * **
30481850 ATGAACACGGCGGGAGCATTAGTTAAATCGAACGTCATGACCAAAAACTCATAATGCCCATACTG
66 ATGAACACGGAGGGAGCATTAGTTAAACCGAACATCATGACCAAAAACTCATAATGCCCATACCA
** * * * *
30481915 AGTTTTAAAAGCAATTTTTAAGATGTCAGACTCCTTCACCTTCAACTGATAATACCTAGATCTTA
131 AGTCCTAAAAGCAATTTTTAAGATGTCAAACTCCTTCACCTTAAACTGATAATACCCAAATCTTA
* * * *
30481980 GATCAATCTTCAAAAACATTGTTGCACATTGAAACTGATCAAACAAGTCATCAGTTTGAGGCAAA
196 GATCAATCTTCAAAAACACTGTTGCACATCGAAACTGATCAAACAAGTCATCAATTTAAGGCAAA
** *
30482045 AGATACTTGTTCTTGATGGTCAACTTATTCAACTATCGATAATCAATACACAACCATATCGTACC
261 AGATACTTGTTCTTGATGGTCAACTTATTCAACTAAAGATAACCAATACACAACCATATCGTACC
* * * *
30482110 ATCCTTCTTCTTCACAAACAAAACTGGTGCACCCCACGGAGATACACTCTGTTGAATGAACCTTC
326 ATCCTTCTTCTTCACAAACAAAACTGGTGCACCCCACGGAGATACACTCGGTCGAATAAACCCTC
*
30482175 CATCAAGCAACTCATGCAACTGAATCTTTAACTCTTTGAACTCTTT
391 CATCAAGCAACTCATGCAACTAAATCTTTAACTCTTTGAACTCTTT
* * *
30482221 TGTCATCTATGAAGACAACCACAAATTGATCCAAGTACGAATGGAATACTC-AGTTTATTAGATC
1 TGTCATCTATGAAAACAACCACAAATTGATCCAAGTACAAATGGAATACTCGA-TTTATTAGATA
* *
30482285 CATGAACACGGTAGGG-TCATTAGTTAAACCGAGCATCATGACCAAAAACTCATAATGCCCATAC
65 CATGAACACGG-AGGGAGCATTAGTTAAACCGAACATCATGACCAAAAACTCATAATGCCCATAC
*
30482349 CAAGTCCTAAAAGCAATTTTTAAGATGTCAAACTCCTTCATCTTAAACTGATAATACCCAAATCT
129 CAAGTCCTAAAAGCAATTTTTAAGATGTCAAACTCCTTCACCTTAAACTGATAATACCCAAATCT
* * ** *
30482414 TATATCAATCTTCAAAAACACTGTTGCACCTCGAAACTGATCAAACAAGTTGTCAATTTAAGGTA
194 TAGATCAATCTTCAAAAACACTGTTGCACATCGAAACTGATCAAACAAGTCATCAATTTAAGGCA
* * * *
30482479 AAGGATAGTTGTTCTTGATGGTCAACTTATTCAACTAAATATAACCAATACACAA-CTTCATCGT
259 AAAGATACTTGTTCTTGATGGTCAACTTATTCAACTAAAGATAACCAATACACAACCAT-ATCGT
* *
30482543 ACCATCCTTCTTCTTCACAAACAAAA-TCGGTGCACCCCATGGAGATGCACTCGGTCGAATAAAC
323 ACCATCCTTCTTCTTCACAAACAAAACT-GGTGCACCCCACGGAGATACACTCGGTCGAATAAAC
** *
30482607 CCTCTGTTAAGCAACT-ATTGCAACTAAATCTTTAA
387 CCTCCATCAAGCAACTCA-TGCAACTAAATCTTTAA
30482642 TTTTGTTAGC
Statistics
Matches: 372, Mismatches: 44, Indels: 10
0.87 0.10 0.02
Matches are distributed among these distances:
435 5 0.01
436 364 0.98
437 3 0.01
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (436 bp):
TGTCATCTATGAAAACAACCACAAATTGATCCAAGTACAAATGGAATACTCGATTTATTAGATAC
ATGAACACGGAGGGAGCATTAGTTAAACCGAACATCATGACCAAAAACTCATAATGCCCATACCA
AGTCCTAAAAGCAATTTTTAAGATGTCAAACTCCTTCACCTTAAACTGATAATACCCAAATCTTA
GATCAATCTTCAAAAACACTGTTGCACATCGAAACTGATCAAACAAGTCATCAATTTAAGGCAAA
AGATACTTGTTCTTGATGGTCAACTTATTCAACTAAAGATAACCAATACACAACCATATCGTACC
ATCCTTCTTCTTCACAAACAAAACTGGTGCACCCCACGGAGATACACTCGGTCGAATAAACCCTC
CATCAAGCAACTCATGCAACTAAATCTTTAACTCTTTGAACTCTTT
Found at i:30484743 original size:27 final size:27
Alignment explanation
Indices: 30484713--30484836 Score: 176
Period size: 27 Copynumber: 4.6 Consensus size: 27
30484703 TAAATTGTGC
* *
30484713 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
30484740 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGATTATGT
*
30484768 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* *
30484795 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
30484822 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
30484837 GGCTCAATAT
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 63 0.72
28 25 0.28
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:30484777 original size:55 final size:54
Alignment explanation
Indices: 30484713--30484836 Score: 185
Period size: 55 Copynumber: 2.3 Consensus size: 54
30484703 TAAATTGTGC
* *
30484713 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGAATACGTAGCACTAAGTGTGCGAG-TTGACTATAT
* * *
30484768 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGAATACGTAGCACTAAGTGTGCGAGTTGACTATAT
*
30484822 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
30484837 GGCTCAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
54 22 0.35
55 41 0.65
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAATTGAATACGTAGCACTAAGTGTGCGAGTTGACTATAT
Found at i:30492008 original size:13 final size:13
Alignment explanation
Indices: 30491990--30492016 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
30491980 GTAATGGTAT
30491990 ATTGAATCCATGA
1 ATTGAATCCATGA
30492003 ATTGAATCCATGA
1 ATTGAATCCATGA
30492016 A
1 A
30492017 AATTTAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATTGAATCCATGA
Found at i:30492594 original size:27 final size:27
Alignment explanation
Indices: 30492563--30492740 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
30492553 TAAATTGTAC
30492563 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
30492590 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
30492616 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
30492644 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
30492672 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
30492699 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
30492726 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
30492741 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:30492677 original size:82 final size:81
Alignment explanation
Indices: 30492564--30492719 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
30492554 AAATTGTACA
* *
30492564 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
30492628 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
30492645 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
30492710 TGCGAGTTGA
65 TGCGAATTGA
30492720 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:30492731 original size:82 final size:81
Alignment explanation
Indices: 30492560--30492740 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
30492550 GATTAAATTG
* *
30492560 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
30492625 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
30492641 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
30492705 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
30492723 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
30492741 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:30492751 original size:27 final size:27
Alignment explanation
Indices: 30492645--30492751 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
30492635 TGACCATGCG
* * * *
30492645 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
30492673 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
30492700 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
30492727 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
30492752 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:30504198 original size:20 final size:20
Alignment explanation
Indices: 30504175--30504215 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
30504165 ATTTTGGCTC
* *
30504175 AATGAGCTCGTTCTTAGCTT
1 AATGAGCACATTCTTAGCTT
*
30504195 AATGAGCACATTTTTAGCTT
1 AATGAGCACATTCTTAGCTT
30504215 A
1 A
30504216 CTTTAGTTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (20 bp):
AATGAGCACATTCTTAGCTT
Found at i:30507420 original size:25 final size:24
Alignment explanation
Indices: 30507375--30507422 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
30507365 CTCGTTAAGT
*
30507375 GCTCTTCGGAGCTACCTATTATAG
1 GCTCTTCGGAGCTACCCATTATAG
* *
30507399 GCTCTTTGTGAGCTTCCCATTATA
1 GCTCTTCG-GAGCTACCCATTATA
30507423 TTGCCCAGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.38
Consensus pattern (24 bp):
GCTCTTCGGAGCTACCCATTATAG
Found at i:30509074 original size:25 final size:25
Alignment explanation
Indices: 30509039--30509128 Score: 92
Period size: 25 Copynumber: 3.6 Consensus size: 25
30509029 TACACCACGA
*
30509039 CTCGTGTGAGCATACCAATTTATAG
1 CTCGTGTGAGCATACCAATTTACAG
* * * *
30509064 CTCGTGAGAGCATAGCGATCTACAG
1 CTCGTGTGAGCATACCAATTTACAG
* *
30509089 CTCGAGTGAGCATATCAATTTACAAG
1 CTCGTGTGAGCATACCAATTTAC-AG
*
30509115 -TCGTATGAGCATAC
1 CTCGTGTGAGCATAC
30509129 ATGTACATGA
Statistics
Matches: 51, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
25 49 0.96
26 2 0.04
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (25 bp):
CTCGTGTGAGCATACCAATTTACAG
Found at i:30513952 original size:60 final size:60
Alignment explanation
Indices: 30513877--30513996 Score: 179
Period size: 60 Copynumber: 2.0 Consensus size: 60
30513867 CTCAGTCATC
*
30513877 TATCACCCTATGAACAGGAGGATTAACATCCTGACCATTC-AGATTATCATTCAGACCAGG
1 TATCACCCTACGAACAGGAGGATTAACATCCTGACCATTCAAG-TTATCATTCAGACCAGG
* * * *
30513937 TATCACCCTACGAACAGGAGGATTAGCATCTTGACCATTCAAGTTATCATTGAGGCCAGG
1 TATCACCCTACGAACAGGAGGATTAACATCCTGACCATTCAAGTTATCATTCAGACCAGG
30513997 ATATTCTTCA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
60 52 0.96
61 2 0.04
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (60 bp):
TATCACCCTACGAACAGGAGGATTAACATCCTGACCATTCAAGTTATCATTCAGACCAGG
Found at i:30518968 original size:98 final size:102
Alignment explanation
Indices: 30518847--30519079 Score: 269
Period size: 98 Copynumber: 2.3 Consensus size: 102
30518837 CAATGCCATA
** * * *
30518847 TCCCAGA-TATGGTCTTACATGGGAGTTCTGATATCGGTGCCCATGCCATGTCCCAGACATGGTC
1 TCCCAGACT-TGGTCTTACATGGGACCTCTCATATAGGTGCCAATGCCATGTCCCAGACATGGTC
*
30518911 TTACGGGGGACCTCTC-ATCT-AGG-TGCCAACGCC-G
65 TTACAGGGGACCTCTCAATCTAAGGATGCCAACGCCAG
* * *
30518945 TCCCAGACTTGGTCTTACATGGGACCTCTCATCTAGGTGCCAATGCCATGTGCTAGACATGGTCT
1 TCCCAGACTTGGTCTTACATGGGACCTCTCATATAGGTGCCAATGCCATGTCCCAGACATGGTCT
* *
30519010 TACATGGGACCTCTCATGATCTCAAGGATGCCAATGCCATG
66 TACAGGGGACCTCTCA--ATCT-AAGGATGCCAACGCCA-G
* *
30519051 TCCCAGACATGGTCTTACATGGGATCTCT
1 TCCCAGACTTGGTCTTACATGGGACCTCT
30519080 TTACCCAAAT
Statistics
Matches: 113, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
98 68 0.60
99 1 0.01
101 4 0.04
103 3 0.03
104 9 0.08
106 28 0.25
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (102 bp):
TCCCAGACTTGGTCTTACATGGGACCTCTCATATAGGTGCCAATGCCATGTCCCAGACATGGTCT
TACAGGGGACCTCTCAATCTAAGGATGCCAACGCCAG
Found at i:30519044 original size:56 final size:50
Alignment explanation
Indices: 30518785--30519079 Score: 299
Period size: 50 Copynumber: 5.8 Consensus size: 50
30518775 GATAATAACA
* * * ** * * *
30518785 TGCCAAAGACATGTCCCAGACATGGTCTTACATGGAATGTTTCATGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * * ** * * *
30518834 TGTCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTGATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* **
30518884 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* *
30518934 TGCCAACGCC--GTCCCAGACTTGGTCTTACATGGGACCTCTCATCTAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* *
30518982 TGCCAATGCCATGTGCTAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCT--AGG
*
30519037 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
30519080 TTACCCAAAT
Statistics
Matches: 201, Mismatches: 36, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
48 44 0.22
49 36 0.18
50 75 0.37
53 4 0.02
55 3 0.01
56 39 0.19
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
Found at i:30521916 original size:693 final size:702
Alignment explanation
Indices: 30520283--30522566 Score: 3187
Period size: 722 Copynumber: 3.2 Consensus size: 702
30520273 GGGCCATTAC
* ** * * *
30520283 ATAACTTGTTTGCGCCTATTGTTAGCTTTGTTGGCATTTGTGTCATTTGCTTTTGCAATACGTTG
1 ATAACTTGTTTGTGCCCCTTGTTAGCTTTGTTGGCATTTGTGTCATTTGTTTTTGCAATCCATTG
* * * *
30520348 TTTTGCATTTTCGTGCATTGATTTCACCAACTCAGCTTTCTTCTTGCCATATGAACTAGAAATAT
66 TTTTGCCTTTTCGTGCATTGATTTCACCAACTCAGCTTTCTTCTCGCCATCTAAACTAGAAATAT
* * * *
30520413 TTTCTATAGGTAATGGCTTGTTCAAGCTCATACATGAAATCCAAAGCGCTTTAGCTGTAAGATTC
131 TTTCTATAGGTAATGGCTTGTTCAAGCTCATACATGAAATCCAATGCGCCTTGGCTGCAAGATTC
* * ** * * * *
30520478 GATTTCTTGGATCAAGGCTTCCAAAATTTGAAATCTTGATTCTTGAAATTGTCT-ACAACAACAA
196 GATTTCTTAGACCAAGATTTCCAAAATTTGAAATCTTGATTCTTAAAACTGTCTGA-AAGAGCAA
* *
30520542 AATTGGACCAATATTTGGTTTCTTGATTTTCTTGAAAATAAGAAAGTGAATCTTGATTCTCTTTT
260 AATTGGACCAATA---------TTGA--TTCTTG------AGATA-T--ATCTTGATTTTCTTTT
* * *
30520607 TTGGTCATGTGAGCATCTAGGGCCTTGGTAACGAAGTCTTGGACGATCCCGTTTAATCTTGCTCA
305 TCGGTCATGTGAGCATCTAGGGCCTTGGTAACGAAGTCTTGGACGATCCCATTCAATCTTGCTCA
* * * * * *
30520672 AATTTGCTTGGCCTTCGACCTTGTTATTGGGCCATGAGGAATTTTTAGCCCGTCACATTCATTAG
370 GATTTGCTTGGCCTTCGACGTTGTTATTGGGCCATGAGGAAATTTGAGCCCATCACATTCATGA-
* *
30520737 A-CTGATTTTGGGCCTTGAGACTTGCATCATTCCCCTCTTCCTAAAAAACATTCGTCCTCGAATC
434 ACCTGATTTTGGGCCTTGAGACTCGCATCATTCCCCTCTTCCTCAAAAACATTCGTCCTCGAATC
* * *
30520801 TTAAACATCAAAGGGAGATAAATTAGCAATATTCAAAGTAGAACTTACATTGTACTCACT-TACA
499 TGAAACATCAAAGGGAGATAAATCAGCAATATT-AAAGTAGAACTTACATTGTACTCACTGGACA
*
30520865 GATCTATTTAATAGGCATTGTCATTGATCCATTTGAGTACTTGGAAAGGCCTATCGCCCCTAGGG
563 GATCTATTTAATAGGCATTGTCATTGATCCACTTGAGTACTTGGAAAGGCCTATCGCCCCTAGGG
* * *
30520930 TCCAATTTAGTCCTCCTTATACTTGGAAATCACTCTTTGCGCATATGGACCCAAACCAAACCATC
628 TCCAATTTAGTCCTCCTTTTACTTGGAAATCACTCTTTGCGCATATGGACCCAAACCCAATCATC
*
30520995 ACCTTCAAGG
693 AACTTCAAGG
* *
30521005 ATAACTTGTTTGTGCCCCTTGTTAGCTTTGTTGGCATTTGTGTCATTTGTTTTTGCAATCCGTTA
1 ATAACTTGTTTGTGCCCCTTGTTAGCTTTGTTGGCATTTGTGTCATTTGTTTTTGCAATCCATTG
* * * * * *
30521070 TTTTTCCTTTTCGTGTATTGATTTCACAAACTCAACTTTCTTCTCGCTATCTAAACTATAAATAT
66 TTTTGCCTTTTCGTGCATTGATTTCACCAACTCAGCTTTCTTCTCGCCATCTAAACTAGAAATAT
* *
30521135 TTTCTATAGGTAATGGTTTGTTCAAGCTCATACATGAAATCCAATGTGCCTTGGCTGCAAGATTC
131 TTTCTATAGGTAATGGCTTGTTCAAGCTCATACATGAAATCCAATGCGCCTTGGCTGCAAGATTC
*
30521200 GATTTCTTGGACCAAGATTTCCAAAATTTGAAATCTTGATTCTTAAAACTGTCTGAAAGAGCAAA
196 GATTTCTTAGACCAAGATTTCCAAAATTTGAAATCTTGATTCTTAAAACTGTCTGAAAGAGCAAA
30521265 ATTGGACC-A-A-T-A-T-TTG-G-T-T-TCTTGATTTTCTTTTTCGGTCATGTGAGCATCTAGG
261 ATTGGACCAATATTGATTCTTGAGATATATCTTGATTTTCTTTTTCGGTCATGTGAGCATCTAGG
* ** * * *
30521320 GCCTTGGTAACGAAGTCTTGGACGATCCCACTCAATCTCACTCAGATTTGTTTGGCTTTCGATGT
326 GCCTTGGTAACGAAGTCTTGGACGATCCCATTCAATCTTGCTCAGATTTGCTTGGCCTTCGACGT
* * *
30521385 TGTTATTGGACCATGAGGAAATTCGAGCCCATCACATTCATGAACCTAATTTTGGGCCTTGAGAC
391 TGTTATTGGGCCATGAGGAAATTTGAGCCCATCACATTCATGAACCTGATTTTGGGCCTTGAGAC
*
30521450 TCGCATCATTCCCCTCTTCCTCAAAAATATTCGTCCTCGAATCTGAAACATCAAAGGGAGATAAA
456 TCGCATCATTCCCCTCTTCCTCAAAAACATTCGTCCTCGAATCTGAAACATCAAAGGGAGATAAA
* * *
30521515 TCAACAATATTAAATGTAAAACTTACATTATACTCACTGGACAGATCTATTTAATAGGCATTGTC
521 TCAGCAATATTAAA-GTAGAACTTACATTGTACTCACTGGACAGATCTATTTAATAGGCATTGTC
* *
30521580 TTTGATCCACTTGAGTACTTGGAAATGCCTATCGCCCCTAGGGTCCAATTTAGTCCTCCTTTTAC
585 ATTGATCCACTTGAGTACTTGGAAAGGCCTATCGCCCCTAGGGTCCAATTTAGTCCTCCTTTTAC
30521645 TTGGAAATCACTCTTTGCGCATATGGACCCAAACCCAATCATCAACTTCAAGG
650 TTGGAAATCACTCTTTGCGCATATGGACCCAAACCCAATCATCAACTTCAAGG
*
30521698 ATAACTTGTTTGTGCCCCTTGTTAGCTTTGTTGGCATTTGTG-CTATTTGTTTTTGCATTCCATT
1 ATAACTTGTTTGTGCCCCTTGTTAGCTTTGTTGGCATTTGTGTC-ATTTGTTTTTGCAATCCATT
30521762 GTTTTGCCTTTTCGTGCATTGATTTCACCAACTCAGCTTTCTTCTCGCCATCTAAACTAGAAATA
65 GTTTTGCCTTTTCGTGCATTGATTTCACCAACTCAGCTTTCTTCTCGCCATCTAAACTAGAAATA
*
30521827 TTTTCTATAGGTAATGGCTTGTTCAAGCTCGTACATGAAATCCAATGCGCCTTGGCTGCAAGATT
130 TTTTCTATAGGTAATGGCTTGTTCAAGCTCATACATGAAATCCAATGCGCCTTGGCTGCAAGATT
* * * *
30521892 CGATTTCTTAGACCAAGATTTCCAAGATTTGAAATCTTGATTCTTGAAATTGTTTGAAAGAGCAA
195 CGATTTCTTAGACCAAGATTTCCAAAATTTGAAATCTTGATTCTTAAAACTGTCTGAAAGAGCAA
30521957 AATTGGACCAATATTTGATTTCTTGATTTTCTTGAGAATAAGAAAGTGAATCTTGATTTTCTTTT
260 AATTGGACC-A-A--T-A----TTGA--TTCTTGAG-AT-----A-T--ATCTTGATTTTCTTTT
* * * *
30522022 TCGGTCATGTGAGCATCTAGGGCTTTGGTAACGAAGTCTTAGACTATCCCATTCAATCTTGCTCG
305 TCGGTCATGTGAGCATCTAGGGCCTTGGTAACGAAGTCTTGGACGATCCCATTCAATCTTGCTCA
* *
30522087 GATTTGCTTGGCCTTCGACGTTTTTATTGGGCCATGAGGAAATTTGAGCCCATCACATTCATGAG
370 GATTTGCTTGGCCTTCGACGTTGTTATTGGGCCATGAGGAAATTTGAGCCCATCACATTCATGAA
* * *
30522152 CCTGATTTTGGGCCTTGAGACTCGCATCATTCCTCTCTTCCTCAAAAAGATTCATCCTCGAATCT
435 CCTGATTTTGGGCCTTGAGACTCGCATCATTCCCCTCTTCCTCAAAAACATTCGTCCTCGAATCT
30522217 GAAACATC-AAGGGAGATAAATCAGCAATATTAAAAGTAGAACTTACATTGTACTCACTGGGA-A
500 GAAACATCAAAGGGAGATAAATCAGCAATATT-AAAGTAGAACTTACATTGTACTCACT-GGACA
* *
30522280 GATCTATTTAATAGGCATTGCCATTGACCCACTTGAGTACTTGGAAAGGCCTATCGCCCCTAGGG
563 GATCTATTTAATAGGCATTGTCATTGATCCACTTGAGTACTTGGAAAGGCCTATCGCCCCTAGGG
30522345 TCCAATTTAGTCCTCCTTTTACTTGGAAATCACTCTTTGCGCATATGGACCCAAACCCAATCATC
628 TCCAATTTAGTCCTCCTTTTACTTGGAAATCACTCTTTGCGCATATGGACCCAAACCCAATCATC
**
30522410 AGGTTCAAGG
693 AACTTCAAGG
* * *
30522420 ATAACTTGTTTGCGCCCCTTGTTAGCTTTATTGGCATTTGTGTCATTTGTTTTTGCAATCTATTG
1 ATAACTTGTTTGTGCCCCTTGTTAGCTTTGTTGGCATTTGTGTCATTTGTTTTTGCAATCCATTG
* * *
30522485 TTTTGCCTTTTCGTGCATTGATTTCACCAACTCAGCTTTCTTCTCGCCATTTGAACTAGATATAT
66 TTTTGCCTTTTCGTGCATTGATTTCACCAACTCAGCTTTCTTCTCGCCATCTAAACTAGAAATAT
30522550 TTTCTATAGGTAATGGC
131 TTTCTATAGGTAATGGC
30522567 ACAAGATCAA
Statistics
Matches: 1408, Mismatches: 116, Indels: 76
0.88 0.07 0.05
Matches are distributed among these distances:
691 4 0.00
692 237 0.17
693 385 0.27
695 1 0.00
696 1 0.00
698 1 0.00
700 1 0.00
705 4 0.00
706 2 0.00
709 2 0.00
710 4 0.00
711 1 0.00
713 1 0.00
720 2 0.00
721 1 0.00
722 553 0.39
723 208 0.15
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (702 bp):
ATAACTTGTTTGTGCCCCTTGTTAGCTTTGTTGGCATTTGTGTCATTTGTTTTTGCAATCCATTG
TTTTGCCTTTTCGTGCATTGATTTCACCAACTCAGCTTTCTTCTCGCCATCTAAACTAGAAATAT
TTTCTATAGGTAATGGCTTGTTCAAGCTCATACATGAAATCCAATGCGCCTTGGCTGCAAGATTC
GATTTCTTAGACCAAGATTTCCAAAATTTGAAATCTTGATTCTTAAAACTGTCTGAAAGAGCAAA
ATTGGACCAATATTGATTCTTGAGATATATCTTGATTTTCTTTTTCGGTCATGTGAGCATCTAGG
GCCTTGGTAACGAAGTCTTGGACGATCCCATTCAATCTTGCTCAGATTTGCTTGGCCTTCGACGT
TGTTATTGGGCCATGAGGAAATTTGAGCCCATCACATTCATGAACCTGATTTTGGGCCTTGAGAC
TCGCATCATTCCCCTCTTCCTCAAAAACATTCGTCCTCGAATCTGAAACATCAAAGGGAGATAAA
TCAGCAATATTAAAGTAGAACTTACATTGTACTCACTGGACAGATCTATTTAATAGGCATTGTCA
TTGATCCACTTGAGTACTTGGAAAGGCCTATCGCCCCTAGGGTCCAATTTAGTCCTCCTTTTACT
TGGAAATCACTCTTTGCGCATATGGACCCAAACCCAATCATCAACTTCAAGG
Found at i:30527870 original size:140 final size:140
Alignment explanation
Indices: 30527681--30528388 Score: 1222
Period size: 140 Copynumber: 5.1 Consensus size: 140
30527671 AAAGAACATA
30527681 AATATAATT--AATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTT
1 AATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTT
* *
30527744 ATTAATATAAACAGTTATATTAATTACTTTTGGTCAAAATATAAAAGACATGAAAATTAATATTC
66 ATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTC
30527809 TTTTGGAAAG
131 TTTTGGAAAG
* *
30527819 AATATAATTAGAATATATGTATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTT
1 AATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTT
* *
30527884 ATTAATATAAATAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTACTATTC
66 ATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTC
30527949 TTTTGGAAAG
131 TTTTGGAAAG
*
30527959 AATATAATTAAAATATATGAATTTGATTCATATAAAATATTGATTGTATATATTTTACCGAATTT
1 AATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTT
* * *
30528024 ATTAATATAAACAGTTATATTAATTAAATTCGATCAAAATATAAAAAACATGAAAATTAATATTC
66 ATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTC
30528089 TTTTGGAAAG
131 TTTTGGAAAG
* **
30528099 AATATAATTAAAATATATGAATTTGATTCATACAAAATATTCATTGTATATATTTTACTAAATTT
1 AATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTT
*
30528164 ATTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGACATGAAAATTAATATTC
66 ATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTC
30528229 TTTTGGAAAG
131 TTTTGGAAAG
* *
30528239 AATATAATTAAAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTTATCGAATT
1 AATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATA-TTTTACCGAATT
* * *
30528304 TATTAATATAAACAGTTATTTTAATTAATTTCAGTCAAAATATAAAAGACATGGAAATTAATATT
65 TATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATT
30528369 CTTTTGGAAAG
130 CTTTTGGAAAG
30528380 AATATAATT
1 AATATAATT
30528389 CTTTTTCTAA
Statistics
Matches: 538, Mismatches: 29, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
138 9 0.02
140 439 0.82
141 90 0.17
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.41
Consensus pattern (140 bp):
AATATAATTAAAATATATGAATTTGATTCATACAAAATATTGATTGTATATATTTTACCGAATTT
ATTAATATAAACAGTTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTC
TTTTGGAAAG
Found at i:30528454 original size:74 final size:75
Alignment explanation
Indices: 30528364--30528510 Score: 208
Period size: 75 Copynumber: 2.0 Consensus size: 75
30528354 ATGGAAATTA
* * * * *
30528364 ATATTCTTTTGGAAAGAATATAATTC-TTTTTCTAACTTTTTC-TTTGCCTTCTCTATTACTAAT
1 ATATTCTTTTGAAAAGAATATAACTCATTTTTCTAAC-TTTCCATTTGCCTTCTCTATTAATAAG
30528427 GGAAGAATCCT
65 GGAAGAATCCT
*
30528438 ATATTCTTTTGAAAAGAATATAACTCATTTTTCTAACTTTCCATTTGCCTTCTGTATTAATAAGG
1 ATATTCTTTTGAAAAGAATATAACTCATTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGG
*
30528503 GAATAATC
66 GAAGAATC
30528511 TTGGTTTTCT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
74 28 0.44
75 36 0.56
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.45
Consensus pattern (75 bp):
ATATTCTTTTGAAAAGAATATAACTCATTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGG
GAAGAATCCT
Found at i:30529376 original size:43 final size:43
Alignment explanation
Indices: 30529329--30529540 Score: 121
Period size: 43 Copynumber: 4.9 Consensus size: 43
30529319 GCATCATCGA
*
30529329 ATAAATAGAA-GAAATTGTA-TAAGCACACATAGTGCATCATAAG
1 ATAAATAGAAGGAAA-TATACT-AGCACACATAGTGCATCATAAG
* **
30529372 ATAAATCGAAGGAAATATACTAGCACACATAGTGCATCATCGG
1 ATAAATAGAAGGAAATATACTAGCACACATAGTGCATCATAAG
* * * * ** * * *
30529415 ACAAGCTA-AAGCAATTATGTTGGCACACACAGTGCATCATTAG
1 ATAA-ATAGAAGGAAATATACTAGCACACATAGTGCATCATAAG
* * * * *
30529458 ATAAACTA-AAGCAACTATACTGGCACACACAGTACATCATCAA-
1 ATAAA-TAGAAGGAAATATACTAGCACACATAGTGCATCAT-AAG
* * * **
30529501 ATAAACCA-AAAGAAATATACTAACACATGTAGTGCATCAT
1 ATAAA-TAGAAGGAAATATACTAGCACACATAGTGCATCAT
30529541 CAAACAAGGC
Statistics
Matches: 132, Mismatches: 32, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
43 125 0.95
44 7 0.05
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.22
Consensus pattern (43 bp):
ATAAATAGAAGGAAATATACTAGCACACATAGTGCATCATAAG
Found at i:30529496 original size:129 final size:129
Alignment explanation
Indices: 30529351--30529593 Score: 337
Period size: 129 Copynumber: 1.9 Consensus size: 129
30529341 AATTGTATAA
* * * * * * **
30529351 GCACACATAGTGCATCAT-AAGATAAATCGAAGGAAATATACTAGCACACATAGTGCATCATCGG
1 GCACACACAGTACATCATCAA-ATAAACCAAAAGAAATATACTAACACACATAGTGCATCATCAA
*
30529415 ACAA-GCTAAAGCAATTATGTTGGCACACACAGTGCATCATTAGATAAACTAAAGCAACTATACT
65 ACAAGGC-AAAGCAATTATGTTGGCACACACAGTGCATCATCAGATAAACTAAAGCAACTATACT
30529479 G
129 G
**
30529480 GCACACACAGTACATCATCAAATAAACCAAAAGAAATATACTAACACATGTAGTGCATCATCAAA
1 GCACACACAGTACATCATCAAATAAACCAAAAGAAATATACTAACACACATAGTGCATCATCAAA
* *
30529545 CAAGGCGAAGCAATTATGTTGGCACACACAGTGCATCATCGGATAAACT
66 CAAGGCAAAGCAATTATGTTGGCACACACAGTGCATCATCAGATAAACT
30529594 GAAGTATAAT
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
129 95 0.96
130 4 0.04
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (129 bp):
GCACACACAGTACATCATCAAATAAACCAAAAGAAATATACTAACACACATAGTGCATCATCAAA
CAAGGCAAAGCAATTATGTTGGCACACACAGTGCATCATCAGATAAACTAAAGCAACTATACTG
Found at i:30529578 original size:43 final size:43
Alignment explanation
Indices: 30529387--30529584 Score: 148
Period size: 43 Copynumber: 4.6 Consensus size: 43
30529377 TCGAAGGAAA
* * **
30529387 TATACTAGCACACATAGTGCATCATCGGACAAGCTAAAGCAAT
1 TATACTGGCACACACAGTGCATCATCAAACAAGCTAAAGCAAT
** * * * * *
30529430 TATGTTGGCACACACAGTGCATCATTAGATAAACTAAAGCAAC
1 TATACTGGCACACACAGTGCATCATCAAACAAGCTAAAGCAAT
* * * * *
30529473 TATACTGGCACACACAGTACATCATCAAATAAACCAAAAG-AAA
1 TATACTGGCACACACAGTGCATCATCAAA-CAAGCTAAAGCAAT
** *** *
30529516 TATACTAACACATGTAGTGCATCATCAAACAAGGC-GAAGCAAT
1 TATACTGGCACACACAGTGCATCATCAAACAA-GCTAAAGCAAT
**
30529559 TATGTTGGCACACACAGTGCATCATC
1 TATACTGGCACACACAGTGCATCATC
30529585 GGATAAACTG
Statistics
Matches: 117, Mismatches: 35, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
42 5 0.04
43 105 0.90
44 7 0.06
ACGTcount: A:0.41, C:0.23, G:0.15, T:0.21
Consensus pattern (43 bp):
TATACTGGCACACACAGTGCATCATCAAACAAGCTAAAGCAAT
Found at i:30532375 original size:50 final size:50
Alignment explanation
Indices: 30532309--30532441 Score: 185
Period size: 50 Copynumber: 2.7 Consensus size: 50
30532299 ATGTCAAAGT
* * *
30532309 CATGTCCCAGACATGGTCTTACATGGGATTTCTCATATCGGTGCCTATGC
1 CATGTCCCAGACATGGTCTTACATGGGATCTCTCATATCAGTGCCAATGC
* * ** * *
30532359 CATGTCCGAGATATGGTCTTACGGGGGACCTCTCATCTCAGTGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGATCTCTCATATCAGTGCCAATGC
30532409 CATGTCCCAGACATGGTCTTACATGGGATCTCT
1 CATGTCCCAGACATGGTCTTACATGGGATCTCT
30532442 TTACCCAAAT
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 69 1.00
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.29
Consensus pattern (50 bp):
CATGTCCCAGACATGGTCTTACATGGGATCTCTCATATCAGTGCCAATGC
Found at i:30535334 original size:12 final size:12
Alignment explanation
Indices: 30535317--30535348 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
30535307 TACCGAATTA
30535317 AATTAATTCTAT
1 AATTAATTCTAT
30535329 AATTAATTCTAT
1 AATTAATTCTAT
30535341 AATTAATT
1 AATTAATT
30535349 TAATTCAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (12 bp):
AATTAATTCTAT
Found at i:30540905 original size:50 final size:50
Alignment explanation
Indices: 30540766--30540957 Score: 127
Period size: 50 Copynumber: 3.9 Consensus size: 50
30540756 AATAACATGC
* * ** * * * * *
30540766 CCAA-GCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC-TT
1 CCAACGCCATGTCCCAAACATGGTCTTACAGGGGACCTCTCATATCCGTG
* * * * * * ** *
30540814 CCAATGCCATATCCCAGATATGGCCTTACATGGGAGTTCTCATATCGGTG
1 CCAACGCCATGTCCCAAACATGGTCTTACAGGGGACCTCTCATATCCGTG
* * * ** *
30540864 CCTATGTCATGTCCCAAACATGGTCTTATGGGGGACCTCTCATCTCCGTG
1 CCAACGCCATGTCCCAAACATGGTCTTACAGGGGACCTCTCATATCCGTG
* * *
30540914 CCAACGCCATGTCTCAGACATGGTCTTACATGGGACCTCTCATA
1 CCAACGCCATGTCCCAAACATGGTCTTACAGGGGACCTCTCATA
30540958 ACCTCAATGA
Statistics
Matches: 109, Mismatches: 33, Indels: 2
0.76 0.23 0.01
Matches are distributed among these distances:
48 4 0.04
49 32 0.29
50 73 0.67
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (50 bp):
CCAACGCCATGTCCCAAACATGGTCTTACAGGGGACCTCTCATATCCGTG
Found at i:30542853 original size:16 final size:15
Alignment explanation
Indices: 30542832--30542882 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 15
30542822 GGTTGGGGTG
30542832 AATGGAATAGGACTGT
1 AATGGAATA-GACTGT
*
30542848 AATGGAATAGAGTTGT
1 AATGGAATAGA-CTGT
*
30542864 AATGGAATAAAACTGT
1 AATGGAAT-AGACTGT
30542880 AAT
1 AAT
30542883 TAGTAATTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 2 0.07
16 26 0.87
17 2 0.07
ACGTcount: A:0.43, C:0.04, G:0.25, T:0.27
Consensus pattern (15 bp):
AATGGAATAGACTGT
Found at i:30544606 original size:17 final size:17
Alignment explanation
Indices: 30544584--30544617 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
30544574 TTCATAAAGT
30544584 CTAAAAATTAAAACTAA
1 CTAAAAATTAAAACTAA
30544601 CTAAAAATTAAAACTAA
1 CTAAAAATTAAAACTAA
30544618 GTATTGAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.12, G:0.00, T:0.24
Consensus pattern (17 bp):
CTAAAAATTAAAACTAA
Found at i:30557244 original size:16 final size:17
Alignment explanation
Indices: 30557225--30557256 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
30557215 TTAATAATGC
30557225 TTTTGT-CCAAAAGTGT
1 TTTTGTCCCAAAAGTGT
30557241 TTTTGTCCCAAAAGTG
1 TTTTGTCCCAAAAGTG
30557257 CTTCTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41
Consensus pattern (17 bp):
TTTTGTCCCAAAAGTGT
Found at i:30558006 original size:17 final size:18
Alignment explanation
Indices: 30557976--30558021 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
30557966 ATTTAAATTG
30557976 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
30557994 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
30558010 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
30558022 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:30559832 original size:14 final size:14
Alignment explanation
Indices: 30559794--30559836 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
30559784 TAAAATGTAC
30559794 AATATAATTAAA-T
1 AATATAATTAAATT
30559807 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
30559822 AA-ATAATTTAATT
1 AATATAATTAAATT
30559835 AA
1 AA
30559837 CTGTTTACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:30563441 original size:16 final size:16
Alignment explanation
Indices: 30563420--30563454 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
30563410 ATTTCAAGTC
30563420 TTACAGCCTATTAATT
1 TTACAGCCTATTAATT
30563436 TTACAGCCTATTAATT
1 TTACAGCCTATTAATT
30563452 TTA
1 TTA
30563455 GTCAAAGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (16 bp):
TTACAGCCTATTAATT
Found at i:30568618 original size:30 final size:31
Alignment explanation
Indices: 30568544--30568779 Score: 102
Period size: 30 Copynumber: 7.8 Consensus size: 31
30568534 GATTATCGGC
30568544 TAATGAAAAGGGATAGCTTCGGCTATGAAAA
1 TAATGAAAAGGGATAGCTTCGGCTATGAAAA
*
30568575 TAATGAAAAGGGATAGCCTT-GGCTAT-CAAA
1 TAATGAAAAGGGATAG-CTTCGGCTATGAAAA
* * * * * *
30568605 TTATGAGAAGGGAT-GGTGACGACCATCG--AA
1 TAATGAAAAGGGATAGCT-TCGGCTAT-GAAAA
* * * *
30568635 CAATGAAAATGGATGGCTTTGGCTATTG--AA
1 TAATGAAAAGGGATAGCTTCGGCTA-TGAAAA
** * *
30568665 TTGTGAAAAGGGATAGCTTCTGCTAT-CAAA
1 TAATGAAAAGGGATAGCTTCGGCTATGAAAA
* * * * * *
30568695 TTATGAAAAGGGAT-GGTGACGACCAT--CAA
1 TAATGAAAAGGGATAGCT-TCGGCTATGAAAA
* **
30568724 CAATGAAAAGGGATAGCTTCGGCTATCG-AGC
1 TAATGAAAAGGGATAGCTTCGGCTAT-GAAAA
*
30568755 T-ATGAAAAGGGATAGCTTCAGCTAT
1 TAATGAAAAGGGATAGCTTCGGCTAT
30568780 CAAGCTATGA
Statistics
Matches: 151, Mismatches: 41, Indels: 27
0.69 0.19 0.12
Matches are distributed among these distances:
28 1 0.01
29 23 0.15
30 99 0.66
31 25 0.17
32 3 0.02
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.24
Consensus pattern (31 bp):
TAATGAAAAGGGATAGCTTCGGCTATGAAAA
Found at i:30568699 original size:90 final size:90
Alignment explanation
Indices: 30568545--30568810 Score: 342
Period size: 89 Copynumber: 3.0 Consensus size: 90
30568535 ATTATCGGCT
* *
30568545 AATGAAAAGGGATAGCTTCGGCTAT-GAAAATAATGAAAAGGGATAGCCTT-GGCTATCAAATTA
1 AATGAAAAGGGATAGCTTCGGCTATCG-AACT-ATGAAAAGGGATAG-CTTCAGCTATCAAATTA
*
30568608 TGAGAAGGGATGGTGACGACCATCGAAC
63 TGAAAAGGGATGGTGACGACCATCGAAC
* * * * * * *
30568636 AATGAAAATGGATGGCTTTGGCTATTGAATTGTGAAAAGGGATAGCTTCTGCTATCAAATTATGA
1 AATGAAAAGGGATAGCTTCGGCTATCGAACTATGAAAAGGGATAGCTTCAGCTATCAAATTATGA
30568701 AAAGGGATGGTGACGACCATC-AAC
66 AAAGGGATGGTGACGACCATCGAAC
* **
30568725 AATGAAAAGGGATAGCTTCGGCTATCGAGCTATGAAAAGGGATAGCTTCAGCTATCAAGCTATGA
1 AATGAAAAGGGATAGCTTCGGCTATCGAACTATGAAAAGGGATAGCTTCAGCTATCAAATTATGA
* *
30568790 AAAGGGTTGG-GACAACCATCG
66 AAAGGGATGGTGACGACCATCG
30568811 TGATTTTATT
Statistics
Matches: 153, Mismatches: 19, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
88 9 0.06
89 70 0.46
90 48 0.31
91 25 0.16
92 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (90 bp):
AATGAAAAGGGATAGCTTCGGCTATCGAACTATGAAAAGGGATAGCTTCAGCTATCAAATTATGA
AAAGGGATGGTGACGACCATCGAAC
Found at i:30568780 original size:30 final size:30
Alignment explanation
Indices: 30568668--30568795 Score: 136
Period size: 30 Copynumber: 4.3 Consensus size: 30
30568658 TATTGAATTG
* **
30568668 TGAAAAGGGATAGCTTCTGCTATCAAATTA
1 TGAAAAGGGATAGCTTCAGCTATCAAGCTA
* * * *
30568698 TGAAAAGGGAT-G-GTGACGACCATCAA-CAA
1 TGAAAAGGGATAGCTTCA-G-CTATCAAGCTA
* *
30568727 TGAAAAGGGATAGCTTCGGCTATCGAGCTA
1 TGAAAAGGGATAGCTTCAGCTATCAAGCTA
30568757 TGAAAAGGGATAGCTTCAGCTATCAAGCTA
1 TGAAAAGGGATAGCTTCAGCTATCAAGCTA
30568787 TGAAAAGGG
1 TGAAAAGGG
30568796 TTGGGACAAC
Statistics
Matches: 79, Mismatches: 14, Indels: 10
0.77 0.14 0.10
Matches are distributed among these distances:
28 1 0.01
29 19 0.24
30 58 0.73
31 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.22
Consensus pattern (30 bp):
TGAAAAGGGATAGCTTCAGCTATCAAGCTA
Found at i:30572040 original size:23 final size:22
Alignment explanation
Indices: 30571988--30572040 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
30571978 TCCACGTCTT
*
30571988 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
30572010 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
30572033 TTTCTTTT
1 TTTCTTTT
30572041 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:30574391 original size:22 final size:23
Alignment explanation
Indices: 30574366--30574425 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
30574356 TGGACTGAAT
30574366 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
30574388 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
30574410 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
30574426 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:30574393 original size:4 final size:4
Alignment explanation
Indices: 30574375--30574408 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
30574365 TATAAAAATT
30574375 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
30574409 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:30577845 original size:25 final size:24
Alignment explanation
Indices: 30577817--30577870 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
30577807 CTATTAATAT
30577817 AATT-ATATAAAAACTAAACTTCCAA
1 AATTCATAT-AAAACT-AACTTCCAA
*
30577842 AATTGCATGTAAAACTAACTTCCAA
1 AATT-CATATAAAACTAACTTCCAA
30577867 AATT
1 AATT
30577871 TCAGCTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 17 0.65
26 6 0.23
27 3 0.12
ACGTcount: A:0.50, C:0.17, G:0.04, T:0.30
Consensus pattern (24 bp):
AATTCATATAAAACTAACTTCCAA
Found at i:30587871 original size:41 final size:41
Alignment explanation
Indices: 30587825--30587903 Score: 158
Period size: 41 Copynumber: 1.9 Consensus size: 41
30587815 ATGATACTGC
30587825 GATATAAACAATGTGAGATTTCGGTAACACCGCTTAGAACT
1 GATATAAACAATGTGAGATTTCGGTAACACCGCTTAGAACT
30587866 GATATAAACAATGTGAGATTTCGGTAACACCGCTTAGA
1 GATATAAACAATGTGAGATTTCGGTAACACCGCTTAGA
30587904 TTATAAATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (41 bp):
GATATAAACAATGTGAGATTTCGGTAACACCGCTTAGAACT
Found at i:30590402 original size:20 final size:20
Alignment explanation
Indices: 30590307--30590404 Score: 63
Period size: 20 Copynumber: 4.9 Consensus size: 20
30590297 TTGTACAGGA
* *
30590307 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTAT
* * * *
30590327 ATACACTTCGATGTCTCTAT
1 TTGCACTTCGGTGCCTCTAT
** * *
30590347 TTGCACCACGGTGCGTCTAA
1 TTGCACTTCGGTGCCTCTAT
* * *
30590367 TTGTACATT-TGTGCCTCTGT
1 TTGCAC-TTCGGTGCCTCTAT
30590387 TTGCACTTCGGTGCCTCT
1 TTGCACTTCGGTGCCTCT
30590405 CTTACGCATC
Statistics
Matches: 53, Mismatches: 23, Indels: 4
0.66 0.29 0.05
Matches are distributed among these distances:
19 2 0.04
20 51 0.96
ACGTcount: A:0.13, C:0.27, G:0.20, T:0.40
Consensus pattern (20 bp):
TTGCACTTCGGTGCCTCTAT
Found at i:30603169 original size:28 final size:28
Alignment explanation
Indices: 30603138--30603193 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
30603128 AATATGTTAT
30603138 GATGGATTTCGTATTGGGATCGCCTCTA
1 GATGGATTTCGTATTGGGATCGCCTCTA
30603166 GATGGATTTCGTATTGGGATCGCCTCTA
1 GATGGATTTCGTATTGGGATCGCCTCTA
30603194 TCTCTGAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.36
Consensus pattern (28 bp):
GATGGATTTCGTATTGGGATCGCCTCTA
Found at i:30610557 original size:40 final size:40
Alignment explanation
Indices: 30610502--30610974 Score: 919
Period size: 40 Copynumber: 11.8 Consensus size: 40
30610492 GAGCATTGGA
30610502 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30610542 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30610582 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30610622 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30610662 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30610702 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30610742 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30610782 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30610822 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
30610862 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
30610902 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
30610942 ATATGTCCGGGCTAAGACCCGAAGGCAAATATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATG
30610975 TTTGCGGTTG
Statistics
Matches: 429, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 429 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:30623896 original size:33 final size:33
Alignment explanation
Indices: 30623859--30623947 Score: 133
Period size: 33 Copynumber: 2.7 Consensus size: 33
30623849 GTCCTGAAAA
*
30623859 ACTATTTTTGTTCTATGTTTACTATCCTAGTGG
1 ACTATCTTTGTTCTATGTTTACTATCCTAGTGG
*
30623892 ACTATCTTTGTTCTATGTTTATTATCCTAGTGG
1 ACTATCTTTGTTCTATGTTTACTATCCTAGTGG
* * *
30623925 ACTATCTTTATTATGTGTTTACT
1 ACTATCTTTGTTCTATGTTTACT
30623948 GTCCCAGCAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.19, C:0.15, G:0.13, T:0.53
Consensus pattern (33 bp):
ACTATCTTTGTTCTATGTTTACTATCCTAGTGG
Found at i:30634843 original size:18 final size:19
Alignment explanation
Indices: 30634809--30634844 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
30634799 ATAAGGTTAT
*
30634809 TTAAGTAAATGATAATAAG
1 TTAAGTAAATAATAATAAG
30634828 TTAAGT-AATAATAATAA
1 TTAAGTAAATAATAATAA
30634845 TAAAACATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (19 bp):
TTAAGTAAATAATAATAAG
Found at i:30639596 original size:50 final size:50
Alignment explanation
Indices: 30639421--30639597 Score: 183
Period size: 50 Copynumber: 3.5 Consensus size: 50
30639411 TACTACAAAT
* * * * ** * * * * *
30639421 GCCATATCCTAGATATGGTCTTGCATGGGAGTTCTCATATCGATTCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
* * **
30639471 GCCAAGTCCCAGTCATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
* * *
30639521 GCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATCTTGGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
*
30639571 TCCATGTCCCAGACATGGTCTTACATG
1 GCCATGTCCCAGACATGGTCTTACATG
30639598 AGATCTCTTT
Statistics
Matches: 103, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 103 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
Found at i:30645411 original size:50 final size:50
Alignment explanation
Indices: 30645311--30645456 Score: 157
Period size: 50 Copynumber: 2.9 Consensus size: 50
30645301 TTTCCTGTAC
* * * * **
30645311 TGCCAATGCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * * ** *
30645361 TGCCCATGGCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
30645411 TGCCAACGCCATGTCCCAGACATGGTATTACATAGGACCTCTCATA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
30645457 ATCTCAATGA
Statistics
Matches: 76, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
50 76 1.00
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:30647028 original size:37 final size:37
Alignment explanation
Indices: 30646978--30647056 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
30646968 TTATTACGAA
* * *
30646978 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
30647015 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
30647052 GTCTT
1 GTCTT
30647057 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:30647253 original size:47 final size:47
Alignment explanation
Indices: 30647175--30647518 Score: 589
Period size: 47 Copynumber: 7.3 Consensus size: 47
30647165 CCCTTCGGGA
* * * * * *
30647175 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30647222 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30647269 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30647316 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30647363 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30647410 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30647457 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30647504 CTTATCACATATATA
1 CTTATCACATATATA
30647519 NNNNNNNNNN
Statistics
Matches: 286, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 286 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:30654696 original size:37 final size:37
Alignment explanation
Indices: 30654646--30654724 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
30654636 TTATTACGAA
* * *
30654646 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
30654683 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
30654720 GTCTT
1 GTCTT
30654725 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:30654970 original size:49 final size:49
Alignment explanation
Indices: 30654843--30655207 Score: 625
Period size: 49 Copynumber: 7.6 Consensus size: 49
30654833 CCCTTCGGGA
* * * * *
30654843 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30654890 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30654937 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30654986 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30655035 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30655084 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30655133 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30655182 CTTATCAC--ATATATACACTTTCACAT
1 CTTATCACATATATATACACTTTCACAT
30655208 ATGGGTTTAA
Statistics
Matches: 305, Mismatches: 9, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 61 0.20
49 243 0.80
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:30661653 original size:50 final size:50
Alignment explanation
Indices: 30661574--30661765 Score: 267
Period size: 50 Copynumber: 3.8 Consensus size: 50
30661564 TTTCCTGTAC
* * ** *
30661574 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * ** *
30661624 TGCCCATGCCATGTCCCATACATGATCTTACGGGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
30661674 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
30661724 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
30661766 TTACCCAAAT
Statistics
Matches: 122, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 122 1.00
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:30663551 original size:27 final size:27
Alignment explanation
Indices: 30663514--30663682 Score: 198
Period size: 27 Copynumber: 6.3 Consensus size: 27
30663504 AGAGGTCATT
* *
30663514 AAATGACCGAAATACCCTCATAAGGTT
1 AAATGACCGAAATACCCTCATAGGGTA
*
30663541 AAATGATCGAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
*
30663568 AAATGATCGAAATTACCC-CATAGGGTA
1 AAATGACCGAAA-TACCCTCATAGGGTA
* **
30663595 AAATGATCGAAATACCC-CTATAAAGTA
1 AAATGACCGAAATACCCTC-ATAGGGTA
* *
30663622 AAATGACCGAAATACCCTGATATGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
* * *
30663649 AAATGACCAAAACACCCCCATAGGGTA
1 AAATGACCGAAATACCCTCATAGGGTA
30663676 AAATGAC
1 AAATGAC
30663683 TGTTATACCC
Statistics
Matches: 125, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
26 6 0.05
27 114 0.91
28 5 0.04
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (27 bp):
AAATGACCGAAATACCCTCATAGGGTA
Found at i:30663649 original size:81 final size:81
Alignment explanation
Indices: 30663514--30663682 Score: 225
Period size: 81 Copynumber: 2.1 Consensus size: 81
30663504 AGAGGTCATT
* * * *
30663514 AAATGACCGAAATACCCTCATAAGGTTAAATGATCGAAATACCCTCATAGGGTAAAATGATCGAA
1 AAATGACCGAAATACCCTCATAAAGTAAAATGACCGAAATACCCTCATAGGGTAAAATGA-CCAA
**
30663579 ATTA-CCCCATAGGGTA
65 AACACCCCCATAGGGTA
* * *
30663595 AAATGATCGAAATACCC-CTATAAAGTAAAATGACCGAAATACCCTGATATGGTAAAATGACCAA
1 AAATGACCGAAATACCCTC-ATAAAGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCAA
30663659 AACACCCCCATAGGGTA
65 AACACCCCCATAGGGTA
30663676 AAATGAC
1 AAATGAC
30663683 TGTTATACCC
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
80 6 0.08
81 70 0.92
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (81 bp):
AAATGACCGAAATACCCTCATAAAGTAAAATGACCGAAATACCCTCATAGGGTAAAATGACCAAA
ACACCCCCATAGGGTA
Found at i:30663879 original size:26 final size:26
Alignment explanation
Indices: 30663849--30663923 Score: 114
Period size: 26 Copynumber: 2.9 Consensus size: 26
30663839 GGAAGTATAT
*
30663849 TGTTACTGGCAGGTTTGCTGCGATAC
1 TGTTACTGGCAGCTTTGCTGCGATAC
* *
30663875 TGTTACTGGCAGCTTTGTTGCGGTAC
1 TGTTACTGGCAGCTTTGCTGCGATAC
*
30663901 TATTACTGGCAGCTTTGCTGCGA
1 TGTTACTGGCAGCTTTGCTGCGA
30663924 CATTGGTGTG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.15, C:0.20, G:0.29, T:0.36
Consensus pattern (26 bp):
TGTTACTGGCAGCTTTGCTGCGATAC
Found at i:30667450 original size:50 final size:50
Alignment explanation
Indices: 30667324--30667609 Score: 310
Period size: 50 Copynumber: 5.7 Consensus size: 50
30667314 GATAATAACA
* * * *
30667324 TGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGA-TGTTTCATGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACT-TCTCATCT-CGG
* * * * * *
30667373 TGCCAATGCCATATTCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGG
* * * * ** * *
30667423 TGCCCATGCCATGTACCAGACAAGGTCTTACGGGGGACCTCTCTTCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGG
* *
30667473 TGCCAACGCCATGTCCCAGACATGGTCTTATATGGGACCTTC-CGTCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CTTCTCATCTCGG
* * *
30667523 TGCTAACGCCATGTCCCAGGCATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGG
30667573 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
30667610 TCTCTTTACC
Statistics
Matches: 198, Mismatches: 34, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
48 1 0.01
49 41 0.21
50 153 0.77
51 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATCTCGG
Found at i:30671074 original size:16 final size:17
Alignment explanation
Indices: 30671053--30671085 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
30671043 TTGTTTTATT
30671053 ATTCATTT-CACACATC
1 ATTCATTTCCACACATC
30671069 ATTCATTTCCACACATC
1 ATTCATTTCCACACATC
30671086 TCTCTCTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.36
Consensus pattern (17 bp):
ATTCATTTCCACACATC
Found at i:30676006 original size:25 final size:25
Alignment explanation
Indices: 30675972--30676070 Score: 94
Period size: 25 Copynumber: 4.0 Consensus size: 25
30675962 GTACATGTAT
* * *
30675972 GCTCATACGAACTGTGAATCGGTAA
1 GCTCATACGAGCTGAGAATCAGTAA
*
30675997 GCTCATACGAGCTAAGAATCAGTAA
1 GCTCATACGAGCTGAGAATCAGTAA
* * *
30676022 GCTC-TCATGATCTG-CAATCAGTAA
1 GCTCAT-ACGAGCTGAGAATCAGTAA
* *
30676046 GCTCATATGAGCTGAGAATCGGTAA
1 GCTCATACGAGCTGAGAATCAGTAA
30676071 TCCCTAATGA
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
24 21 0.35
25 39 0.65
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (25 bp):
GCTCATACGAGCTGAGAATCAGTAA
Found at i:30678356 original size:27 final size:27
Alignment explanation
Indices: 30678324--30678756 Score: 244
Period size: 27 Copynumber: 16.7 Consensus size: 27
30678314 AATTGTGGGC
* *
30678324 AAATGACTGAAATACCCTCGATGGGTA
1 AAATGACTGAATTACCCTCGAAGGGTA
* *
30678351 AAATGA-TCGAATTACCCCCGAAGAGTA
1 AAATGACT-GAATTACCCTCGAAGGGTA
*
30678378 AAATGACTGAATTACCCTTGAAGGGTA
1 AAATGACTGAATTACCCTCGAAGGGTA
** * * *
30678405 AAATGACCAAATTACCCCCAAAAGGT-
1 AAATGACTGAATTACCCTCGAAGGGTA
* * *
30678431 -CAT---T-TATTACCC-CTAAAGGGTA
1 AAATGACTGAATTACCCTC-GAAGGGTA
* * * * *
30678453 AAATGACCGAATTACCTTTGAAGAGAA
1 AAATGACTGAATTACCCTCGAAGGGTA
30678480 AAATGACTGAATTACCCTCGAAGGGTA
1 AAATGACTGAATTACCCTCGAAGGGTA
*
30678507 AAATGACTGAATTACCCCCGAAGGGT-
1 AAATGACTGAATTACCCTCGAAGGGTA
* *
30678533 -CAT---TGAATTACCCCCGAAGGGT-
1 AAATGACTGAATTACCCTCGAAGGGTA
* * * *
30678555 -CAT---T-TATTAGCCTTGAAGGGTA
1 AAATGACTGAATTACCCTCGAAGGGTA
* * * *
30678577 AAAT-AATCGAATTACCCCCAAAGGGTG
1 AAATGACT-GAATTACCCTCGAAGGGTA
*
30678604 AAATGACCGAATTA-CCTCCGAAGGGTA
1 AAATGACTGAATTACCCT-CGAAGGGTA
* * **
30678631 AAATAACTGAGTTACCCTTAAAGGGTA
1 AAATGACTGAATTACCCTCGAAGGGTA
* * * *
30678658 ATATGACCGAATTACCCTCAAAAGGTA
1 AAATGACTGAATTACCCTCGAAGGGTA
*
30678685 AAATGA-TCGAATTACCCTCGAAAGGTA
1 AAATGACT-GAATTACCCTCGAAGGGTA
* ** * * *
30678712 AAATAACCAAAATACCCCCGAATGGTA
1 AAATGACTGAATTACCCTCGAAGGGTA
* *
30678739 AAATGACCGAAATACCCT
1 AAATGACTGAATTACCCT
30678757 TAAAGGTAAA
Statistics
Matches: 314, Mismatches: 71, Indels: 42
0.74 0.17 0.10
Matches are distributed among these distances:
20 1 0.00
21 26 0.08
22 23 0.07
23 4 0.01
25 5 0.02
26 3 0.01
27 247 0.79
28 5 0.02
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (27 bp):
AAATGACTGAATTACCCTCGAAGGGTA
Found at i:30678512 original size:102 final size:103
Alignment explanation
Indices: 30678346--30678546 Score: 296
Period size: 102 Copynumber: 2.0 Consensus size: 103
30678336 TACCCTCGAT
* * *
30678346 GGGTAAAATGATCGAATTACCCCCGAAGAGTAAAATGACTGAATTACCCTTGAAGGGTAAAATGA
1 GGGTAAAATGACCGAATTACCCCCGAAGAGAAAAATGACTGAATTACCCTCGAAGGGTAAAATGA
*
30678411 CCAAATTACCCCCAAAAGGTCATT-TATTACCCCTAAA
66 CCAAATTACCCCCAAAAGGTCATTGAATTACCCCTAAA
***
30678448 GGGTAAAATGACCGAATTACCTTTGAAGAGAAAAATGACTGAATTACCCTCGAAGGGTAAAATGA
1 GGGTAAAATGACCGAATTACCCCCGAAGAGAAAAATGACTGAATTACCCTCGAAGGGTAAAATGA
** * *
30678513 CTGAATTACCCCCGAAGGGTCATTGAATTACCCC
66 CCAAATTACCCCCAAAAGGTCATTGAATTACCCC
30678547 CGAAGGGTCA
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
102 79 0.91
103 8 0.09
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (103 bp):
GGGTAAAATGACCGAATTACCCCCGAAGAGAAAAATGACTGAATTACCCTCGAAGGGTAAAATGA
CCAAATTACCCCCAAAAGGTCATTGAATTACCCCTAAA
Found at i:30678563 original size:21 final size:22
Alignment explanation
Indices: 30678514--30678558 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
30678504 GTAAAATGAC
30678514 TGAATTACCCCCGAAGGGTCAT
1 TGAATTACCCCCGAAGGGTCAT
30678536 TGAATTACCCCCGAAGGGTCAT
1 TGAATTACCCCCGAAGGGTCAT
30678558 T
1 T
30678559 TATTAGCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (22 bp):
TGAATTACCCCCGAAGGGTCAT
Found at i:30678728 original size:81 final size:81
Alignment explanation
Indices: 30678565--30678807 Score: 249
Period size: 81 Copynumber: 3.0 Consensus size: 81
30678555 CATTTATTAG
* * * * * *
30678565 CCTTGAAGGGTAAAATAATCGAATTACCCCCAAAGGGTGAAATGACCGAATTA-CCTCCGAAGGG
1 CCTTGAAGGGTAAAATGACCGAATTACCCTCAAAAGGTAAAATGACCGAATTACCCT-CGAAAGG
* **
30678629 TAAAATAACTGAGTTAC
65 TAAAATAACCGAAATAC
* * *
30678646 CCTTAAAGGGTAATATGACCGAATTACCCTCAAAAGGTAAAATGATCGAATTACCCTCGAAAGGT
1 CCTTGAAGGGTAAAATGACCGAATTACCCTCAAAAGGTAAAATGACCGAATTACCCTCGAAAGGT
*
30678711 AAAATAACCAAAATAC
66 AAAATAACCGAAATAC
** * * * * * * *
30678727 CCCCGAATGGTAAAATGACCGAAATACCCT-TAAAGGTAAAATTACCTAAATACCTTC-AAAGGT
1 CCTTGAAGGGTAAAATGACCGAATTACCCTCAAAAGGTAAAATGACCGAATTACCCTCGAAAGGT
*
30678790 AAAATTACCGAAATAC
66 AAAATAACCGAAATAC
30678806 CC
1 CC
30678808 CCATTGGATA
Statistics
Matches: 134, Mismatches: 27, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
79 22 0.16
80 21 0.16
81 88 0.66
82 3 0.02
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (81 bp):
CCTTGAAGGGTAAAATGACCGAATTACCCTCAAAAGGTAAAATGACCGAATTACCCTCGAAAGGT
AAAATAACCGAAATAC
Found at i:30678777 original size:26 final size:26
Alignment explanation
Indices: 30678643--30678807 Score: 152
Period size: 27 Copynumber: 6.2 Consensus size: 26
30678633 ATAACTGAGT
* *
30678643 TACCCTTAAAGGGTAATATGACCGAAT
1 TACCCTTAAA-GGTAAAATGACCGAAA
* * *
30678670 TACCCTCAAAAGGTAAAATGATCGAAT
1 TACCCT-TAAAGGTAAAATGACCGAAA
* * *
30678697 TACCCTCGAAAGGTAAAATAACCAAAA
1 TACCCT-TAAAGGTAAAATGACCGAAA
** *
30678724 TACCCCCGAATGGTAAAATGACCGAAA
1 TA-CCCTTAAAGGTAAAATGACCGAAA
* *
30678751 TACCCTTAAAGGTAAAATTACCTAAA
1 TACCCTTAAAGGTAAAATGACCGAAA
*
30678777 TA-CCTTCAAAGGTAAAATTACCGAAA
1 TACCCTT-AAAGGTAAAATGACCGAAA
30678803 TACCC
1 TACCC
30678808 CCATTGGATA
Statistics
Matches: 116, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
25 4 0.03
26 41 0.35
27 65 0.56
28 6 0.05
ACGTcount: A:0.44, C:0.22, G:0.13, T:0.21
Consensus pattern (26 bp):
TACCCTTAAAGGTAAAATGACCGAAA
Found at i:30678834 original size:79 final size:80
Alignment explanation
Indices: 30678654--30678824 Score: 211
Period size: 79 Copynumber: 2.1 Consensus size: 80
30678644 ACCCTTAAAG
* * * * *
30678654 GGTAATATGACCGAATTACCCTCAAAAGGTAAAATGATCGAATTACCCTCGAAAGGTAAAATAAC
1 GGTAAAATGACCGAAATACCCT-TAAAGGTAAAATGACCGAAATACCCTCGAAAGGTAAAATAAC
30678719 CAAAATACCCCCGAAT
65 CAAAATACCCCCGAAT
* * * *
30678735 GGTAAAATGACCGAAATACCCTTAAAGGTAAAATTACCTAAATACCTTC-AAAGGTAAAATTACC
1 GGTAAAATGACCGAAATACCCTTAAAGGTAAAATGACCGAAATACCCTCGAAAGGTAAAATAACC
* *
30678799 GAAATACCCCC-ATT
66 AAAATACCCCCGAAT
30678813 GGATAAAATGAC
1 GG-TAAAATGAC
30678825 TGTTATACCC
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
78 4 0.05
79 33 0.42
80 21 0.27
81 20 0.26
ACGTcount: A:0.44, C:0.21, G:0.14, T:0.21
Consensus pattern (80 bp):
GGTAAAATGACCGAAATACCCTTAAAGGTAAAATGACCGAAATACCCTCGAAAGGTAAAATAACC
AAAATACCCCCGAAT
Found at i:30679171 original size:28 final size:28
Alignment explanation
Indices: 30679131--30679247 Score: 171
Period size: 28 Copynumber: 4.2 Consensus size: 28
30679121 ATTGCACTAT
*
30679131 ACTGTTATTGTATTGGGCTAATGCCCAC
1 ACTGTTATTGTATTGGGCTAAGGCCCAC
30679159 ACTGTTATTGTATTGGGCTAAGGCCCAC
1 ACTGTTATTGTATTGGGCTAAGGCCCAC
* ** *
30679187 ACTATTATTGTATTAAGCTAAGGCCTAC
1 ACTGTTATTGTATTGGGCTAAGGCCCAC
* *
30679215 ACTGTTACTGTATCGGGCTAAGGCCCAC
1 ACTGTTATTGTATTGGGCTAAGGCCCAC
30679243 ACTGT
1 ACTGT
30679248 GATGTTACTA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 78 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.32
Consensus pattern (28 bp):
ACTGTTATTGTATTGGGCTAAGGCCCAC
Found at i:30686564 original size:12 final size:12
Alignment explanation
Indices: 30686547--30686571 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
30686537 GCCAAGGTAG
30686547 ATGTTATTGAGA
1 ATGTTATTGAGA
30686559 ATGTTATTGAGA
1 ATGTTATTGAGA
30686571 A
1 A
30686572 ACTCCCACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.24, T:0.40
Consensus pattern (12 bp):
ATGTTATTGAGA
Found at i:30692330 original size:27 final size:27
Alignment explanation
Indices: 30692300--30692531 Score: 227
Period size: 27 Copynumber: 8.6 Consensus size: 27
30692290 TCATCTCCTA
** **
30692300 GGGGTATAACAGTCATTTTATGCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
*
30692327 GGGGTATTTC-GATCATTTTACCCTATA
1 GGGGTATTTCAG-TCATTTTACCCTATG
* *
30692354 GGGGTATTTCGGTCATTTTAACCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
30692381 GGGGTATTTCGGTCATTCTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* *
30692408 GAGGTATTTCGGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
30692435 GGGGTATTTCAGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* * *
30692462 AGGGTA-TTCAGGTCATTTTATCCTATA
1 GGGGTATTTCA-GTCATTTTACCCTATG
* * * * * *
30692489 AGGGCATTT-TGATCATTCTACTCTATA
1 GGGGTATTTCAG-TCATTTTACCCTATG
*
30692516 GGGGTATTTCGGTCAT
1 GGGGTATTTCAGTCAT
30692532 AATAGTGTAA
Statistics
Matches: 175, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
26 6 0.03
27 165 0.94
28 4 0.02
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCCTATG
Found at i:30692356 original size:54 final size:54
Alignment explanation
Indices: 30692298--30692531 Score: 260
Period size: 54 Copynumber: 4.3 Consensus size: 54
30692288 TTTCATCTCC
** * *
30692298 TAGGGGTATAACAGTCATTTTATGCTATGGGGGTATTTCGATCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTATCCTATGGGGGTATTTCGATCATTCTACCCTA
* * *
30692352 TAGGGGTATTTCGGTCATTTTAACCTATGGGGGTATTTCGGTCATTCTACCCTA
1 TAGGGGTATTTCAGTCATTTTATCCTATGGGGGTATTTCGATCATTCTACCCTA
* * *
30692406 T-GGAGGTATTTCGGTCATTTTACCCTATGGGGGTATTTC-AGTCATTTTACCCTA
1 TAGG-GGTATTTCAGTCATTTTATCCTATGGGGGTATTTCGA-TCATTCTACCCTA
** * * *
30692460 T-GAGGGTA-TTCAGGTCATTTTATCCTATAAGGGCATTTTGATCATTCTACTCTA
1 TAG-GGGTATTTCA-GTCATTTTATCCTATGGGGGTATTTCGATCATTCTACCCTA
*
30692514 TAGGGGTATTTCGGTCAT
1 TAGGGGTATTTCAGTCAT
30692532 AATAGTGTAA
Statistics
Matches: 154, Mismatches: 19, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
53 5 0.03
54 143 0.93
55 6 0.04
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (54 bp):
TAGGGGTATTTCAGTCATTTTATCCTATGGGGGTATTTCGATCATTCTACCCTA
Found at i:30692424 original size:81 final size:81
Alignment explanation
Indices: 30692322--30692531 Score: 271
Period size: 81 Copynumber: 2.6 Consensus size: 81
30692312 TCATTTTATG
* *
30692322 CTATGGGGGTATTTCGATCATTTTACCCTATAGGGGTATTTCGGTCATTTTAACCTATGGGGGTA
1 CTATGGAGGTATTTCGATCATTTTACCCTATAGGGGTATTTCGGTCATTTTAACCTATGAGGGTA
30692387 TTTC-GGTCATTCTACC
66 -TTCAGGTCATTCTACC
* * * *
30692403 CTATGGAGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATGAGGGTA
1 CTATGGAGGTATTTCGATCATTTTACCCTATAGGGGTATTTCGGTCATTTTAACCTATGAGGGTA
* *
30692468 TTCAGGTCATTTTATC
66 TTCAGGTCATTCTACC
* * * * *
30692484 CTAT-AAGGGCATTTTGATCATTCTACTCTATAGGGGTATTTCGGTCAT
1 CTATGGA-GGTATTTCGATCATTTTACCCTATAGGGGTATTTCGGTCAT
30692532 AATAGTGTAA
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 4 0.04
81 107 0.96
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (81 bp):
CTATGGAGGTATTTCGATCATTTTACCCTATAGGGGTATTTCGGTCATTTTAACCTATGAGGGTA
TTCAGGTCATTCTACC
Found at i:30693716 original size:21 final size:22
Alignment explanation
Indices: 30693692--30693736 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
30693682 TATTTAACCC
*
30693692 AAAATAAATTGGATTAT-AATT
1 AAAATAAATTAGATTATGAATT
* *
30693713 AAAATTAATTATATTATGAATT
1 AAAATAAATTAGATTATGAATT
30693735 AA
1 AA
30693737 TATTCATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (22 bp):
AAAATAAATTAGATTATGAATT
Found at i:30697097 original size:19 final size:19
Alignment explanation
Indices: 30697059--30697097 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
30697049 GTATCTTGAC
* *
30697059 AAAAGTGGTAAATCATTAT
1 AAAAGTAGTAAATCACTAT
*
30697078 AAAAGTAGTAAATTACTAT
1 AAAAGTAGTAAATCACTAT
30697097 A
1 A
30697098 TATATTATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.05, G:0.13, T:0.31
Consensus pattern (19 bp):
AAAAGTAGTAAATCACTAT
Found at i:30698401 original size:18 final size:18
Alignment explanation
Indices: 30698380--30698417 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
30698370 ATTCGGGTAA
30698380 AACCGAAAAAATTCGGTT
1 AACCGAAAAAATTCGGTT
**
30698398 AACCGACCAAATTCGGTT
1 AACCGAAAAAATTCGGTT
30698416 AA
1 AA
30698418 TCGGTCGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (18 bp):
AACCGAAAAAATTCGGTT
Found at i:30698761 original size:9 final size:9
Alignment explanation
Indices: 30698747--30698822 Score: 98
Period size: 9 Copynumber: 8.4 Consensus size: 9
30698737 GCAGTGATTC
*
30698747 AATTTGGTT
1 AATTCGGTT
*
30698756 AATTTGGTT
1 AATTCGGTT
*
30698765 AATTCGGGT
1 AATTCGGTT
*
30698774 AATTCGGGT
1 AATTCGGTT
*
30698783 AATTCAGTT
1 AATTCGGTT
*
30698792 AATTCGGGT
1 AATTCGGTT
30698801 AATTCGGTT
1 AATTCGGTT
30698810 AATTCGGTT
1 AATTCGGTT
30698819 AATT
1 AATT
30698823 TTTAACCAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 60 1.00
ACGTcount: A:0.25, C:0.08, G:0.24, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:30698785 original size:27 final size:27
Alignment explanation
Indices: 30698755--30698822 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
30698745 TCAATTTGGT
*
30698755 TAATTTGGTTAATTCGGGTAATTCGGG
1 TAATTCGGTTAATTCGGGTAATTCGGG
* *
30698782 TAATTCAGTTAATTCGGGTAATTCGGT
1 TAATTCGGTTAATTCGGGTAATTCGGG
30698809 TAATTCGGTTAATT
1 TAATTCGGTTAATT
30698823 TTTAACCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.25, C:0.09, G:0.24, T:0.43
Consensus pattern (27 bp):
TAATTCGGTTAATTCGGGTAATTCGGG
Found at i:30698971 original size:12 final size:12
Alignment explanation
Indices: 30698954--30698978 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
30698944 TATTATTTCG
30698954 GGTCGGTTAACC
1 GGTCGGTTAACC
30698966 GGTCGGTTAACC
1 GGTCGGTTAACC
30698978 G
1 G
30698979 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:30704657 original size:19 final size:19
Alignment explanation
Indices: 30704633--30704669 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
30704623 CTACAACTCT
30704633 CAATATTTCGTCCTATTCC
1 CAATATTTCGTCCTATTCC
*
30704652 CAATATTTCTTCCTATTC
1 CAATATTTCGTCCTATTC
30704670 TCCATATCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.30, G:0.03, T:0.46
Consensus pattern (19 bp):
CAATATTTCGTCCTATTCC
Found at i:30704676 original size:19 final size:19
Alignment explanation
Indices: 30704630--30704676 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
30704620 ACACTACAAC
*
30704630 TCTCAATATTTCGTCCTAT
1 TCTCCATATTTCGTCCTAT
*
30704649 TC-CCAATATTTCTTCCTAT
1 TCTCC-ATATTTCGTCCTAT
30704668 TCTCCATAT
1 TCTCCATAT
30704677 CCATCTGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 1 0.04
19 21 0.88
20 2 0.08
ACGTcount: A:0.21, C:0.30, G:0.02, T:0.47
Consensus pattern (19 bp):
TCTCCATATTTCGTCCTAT
Found at i:30708246 original size:27 final size:27
Alignment explanation
Indices: 30708213--30708692 Score: 852
Period size: 27 Copynumber: 17.6 Consensus size: 27
30708203 TAAATTGTGC
*
30708213 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
30708240 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
30708267 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
30708294 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
30708321 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
30708348 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
30708375 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
30708403 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
30708430 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
30708457 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
30708485 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
30708513 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
30708541 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
30708569 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
30708596 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
30708623 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
30708651 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
30708678 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
30708693 GACTTAATAT
Statistics
Matches: 444, Mismatches: 6, Indels: 6
0.97 0.01 0.01
Matches are distributed among these distances:
27 281 0.63
28 163 0.37
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:30708453 original size:82 final size:82
Alignment explanation
Indices: 30708213--30708692 Score: 874
Period size: 82 Copynumber: 5.9 Consensus size: 82
30708203 TAAATTGTGC
*
30708213 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
30708277 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
30708294 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
30708358 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
*
30708375 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
30708440 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
30708457 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAG
30708522 TGTGCGAGTTTGACTATGT
65 TGTGCGAG-TTGACTATGT
30708541 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
30708606 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
* * * *
30708623 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
30708688 GTGCG
66 GTGCG
30708693 GACTTAATAT
Statistics
Matches: 389, Mismatches: 6, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
81 97 0.25
82 183 0.47
83 54 0.14
84 55 0.14
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATGT
Found at i:30719777 original size:28 final size:28
Alignment explanation
Indices: 30719720--30719928 Score: 359
Period size: 28 Copynumber: 7.5 Consensus size: 28
30719710 TAAATTGTGC
*
30719720 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
30719747 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
30719775 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
30719803 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
30719831 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
30719859 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
30719887 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
30719914 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
30719929 GACTTAATAT
Statistics
Matches: 177, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
27 39 0.22
28 138 0.78
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:30723173 original size:25 final size:25
Alignment explanation
Indices: 30723145--30723204 Score: 120
Period size: 25 Copynumber: 2.4 Consensus size: 25
30723135 TCACAACTCG
30723145 TGTGAGCATACTTTTTCGTAGTTCA
1 TGTGAGCATACTTTTTCGTAGTTCA
30723170 TGTGAGCATACTTTTTCGTAGTTCA
1 TGTGAGCATACTTTTTCGTAGTTCA
30723195 TGTGAGCATA
1 TGTGAGCATA
30723205 TATGTACAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.42
Consensus pattern (25 bp):
TGTGAGCATACTTTTTCGTAGTTCA
Found at i:30723864 original size:20 final size:20
Alignment explanation
Indices: 30723839--30723876 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
30723829 TATAGAACGT
30723839 AAATGC-AATGGAAAGTAATG
1 AAATGCAAAT-GAAAGTAATG
30723859 AAATGCAAATGAAAGTAA
1 AAATGCAAATGAAAGTAA
30723877 AAAAAATTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.55, C:0.05, G:0.21, T:0.18
Consensus pattern (20 bp):
AAATGCAAATGAAAGTAATG
Found at i:30741641 original size:39 final size:39
Alignment explanation
Indices: 30741587--30741668 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
30741577 TCTAATACAA
*
30741587 GAGTTAGAAAAATTAATTGGCCAAAGGTTGTCACTGCAT
1 GAGTTAGAAAAATTAATTGGCCAAAGGCTGTCACTGCAT
30741626 GAGTTAGAAAAATTAATTGGCCAAAGGCTGTCACTGCAT
1 GAGTTAGAAAAATTAATTGGCCAAAGGCTGTCACTGCAT
30741665 GAGT
1 GAGT
30741669 GTGTGTCAGT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.27
Consensus pattern (39 bp):
GAGTTAGAAAAATTAATTGGCCAAAGGCTGTCACTGCAT
Found at i:30743801 original size:33 final size:34
Alignment explanation
Indices: 30743764--30743870 Score: 95
Period size: 33 Copynumber: 3.3 Consensus size: 34
30743754 AAGAAAACCA
30743764 AGTATG-TTCATAAGAACTTAGCGAGTTCCAAGG
1 AGTATGATTCATAAGAACTTAGCGAGTTCCAAGG
* ** **
30743797 AGTATGATTC--AACAA--TAG-G-GTCTATAACCA
1 AGTATGATTCATAAGAACTTAGCGAGT-TCCAA-GG
30743827 AGTATG-TTCATAAGAACTTAGCGAGTTCCAAGG
1 AGTATGATTCATAAGAACTTAGCGAGTTCCAAGG
30743860 AGTATGATTCA
1 AGTATGATTCA
30743871 ACAATAGGGT
Statistics
Matches: 54, Mismatches: 10, Indels: 19
0.65 0.12 0.23
Matches are distributed among these distances:
28 2 0.04
29 7 0.13
30 9 0.17
31 4 0.07
32 4 0.07
33 15 0.28
34 11 0.20
35 2 0.04
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (34 bp):
AGTATGATTCATAAGAACTTAGCGAGTTCCAAGG
Found at i:30743837 original size:63 final size:63
Alignment explanation
Indices: 30743759--30743886 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
30743749 AGAAGAAGAA
30743759 AACCAAGTATGTTCATAAGAACTTAGCGAGTTCCAAGGAGTATGATTCAACAATAGGGTCTAT
1 AACCAAGTATGTTCATAAGAACTTAGCGAGTTCCAAGGAGTATGATTCAACAATAGGGTCTAT
30743822 AACCAAGTATGTTCATAAGAACTTAGCGAGTTCCAAGGAGTATGATTCAACAATAGGGTCTAT
1 AACCAAGTATGTTCATAAGAACTTAGCGAGTTCCAAGGAGTATGATTCAACAATAGGGTCTAT
30743885 AA
1 AA
30743887 ACTCTAAATT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.27
Consensus pattern (63 bp):
AACCAAGTATGTTCATAAGAACTTAGCGAGTTCCAAGGAGTATGATTCAACAATAGGGTCTAT
Found at i:30745174 original size:5 final size:5
Alignment explanation
Indices: 30745164--30745190 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
30745154 TGAGCATTCG
30745164 ATCGA ATCGA ATCGA ATCGA ATCGA AT
1 ATCGA ATCGA ATCGA ATCGA ATCGA AT
30745191 AAAAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (5 bp):
ATCGA
Found at i:30745596 original size:17 final size:18
Alignment explanation
Indices: 30745556--30745598 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
30745546 AGCATGAGTC
*
30745556 GAAATAAACAACATTATAA
1 GAAA-AAACAACAATATAA
*
30745575 TAAAAAACAA-AATATAA
1 GAAAAAACAACAATATAA
30745592 GAAAAAA
1 GAAAAAA
30745599 GTCTAAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 12 0.57
18 6 0.29
19 3 0.14
ACGTcount: A:0.72, C:0.07, G:0.05, T:0.16
Consensus pattern (18 bp):
GAAAAAACAACAATATAA
Found at i:30746713 original size:494 final size:494
Alignment explanation
Indices: 30745786--30746775 Score: 1971
Period size: 494 Copynumber: 2.0 Consensus size: 494
30745776 AAAAGTATTG
30745786 AACGAGTTAGTTAACTAATAATTTTTTTTTGCAAAAATAAATTAAATAAACATTTAACTTTATAA
1 AACGAGTTAGTTAACTAATAATTTTTTTTTGCAAAAATAAATTAAATAAACATTTAACTTTATAA
30745851 ACTAATGCTAAGTATGTTACCTTCTTGATCTTCGGGTATTTTGGATAAGTCTAGCAAATTTAAAA
66 ACTAATGCTAAGTATGTTACCTTCTTGATCTTCGGGTATTTTGGATAAGTCTAGCAAATTTAAAA
30745916 ACAAAAGTGTTAGTTAAATTATGGGAATGCTTACTATTACTAATATAAAGAATACAAAAGCTTAT
131 ACAAAAGTGTTAGTTAAATTATGGGAATGCTTACTATTACTAATATAAAGAATACAAAAGCTTAT
30745981 TTTATAAATTAAAATTTATATATTACCATCTTCCATTGTTTGAAGTTCATCAAAATAATCTTCAA
196 TTTATAAATTAAAATTTATATATTACCATCTTCCATTGTTTGAAGTTCATCAAAATAATCTTCAA
30746046 GATTGATGGCATCATTAGATTTCCGAAGCCAATCTTGTGTGCAAACCAAAGCTTCGACCATGAGA
261 GATTGATGGCATCATTAGATTTCCGAAGCCAATCTTGTGTGCAAACCAAAGCTTCGACCATGAGA
30746111 GGAGTTAGAGAACTTCTAAAACTATCGAGAACACCTCCACCCGTGCTAAATGCACTTGTCGAAAC
326 GGAGTTAGAGAACTTCTAAAACTATCGAGAACACCTCCACCCGTGCTAAATGCACTTGTCGAAAC
30746176 CATTTTTTTGAAAAAGAAAAAAAAAGAGGATCGACTTGTAAAAACGAAAAAGGGAGTCACCACCG
391 CATTTTTTTGAAAAAGAAAAAAAAAGAGGATCGACTTGTAAAAACGAAAAAGGGAGTCACCACCG
30746241 ATCTTTTATTAAGGTGTGATCGGTTCACCATTAAAAATA
456 ATCTTTTATTAAGGTGTGATCGGTTCACCATTAAAAATA
30746280 AACGAGTTAGTTAACTAATAATTTTTTTTTGCAAAAATAAATTAAATAAACATTTAACTTTATAA
1 AACGAGTTAGTTAACTAATAATTTTTTTTTGCAAAAATAAATTAAATAAACATTTAACTTTATAA
30746345 ACTAATGCTAAGTATGTTACCTTCTTGATCTTCGGGTATTTTGGATAAGTCTAGCAAATTTAAAA
66 ACTAATGCTAAGTATGTTACCTTCTTGATCTTCGGGTATTTTGGATAAGTCTAGCAAATTTAAAA
30746410 ACAAAAGTGTTAGTTAAATTATGGGAATGCTTACTATTACTAATATAAAGAATACAAAAGCTTAT
131 ACAAAAGTGTTAGTTAAATTATGGGAATGCTTACTATTACTAATATAAAGAATACAAAAGCTTAT
30746475 TTTATAAATTAAAATTTATATATTACCATCTTCCATTGTTTGAAGTTCATCAAAATAATCTTCAA
196 TTTATAAATTAAAATTTATATATTACCATCTTCCATTGTTTGAAGTTCATCAAAATAATCTTCAA
30746540 GATTGATGGCATCATTAGATTTCCGAAGCCAATCTTGTGTGCAAACCAAAGCTTCGACCATGAGA
261 GATTGATGGCATCATTAGATTTCCGAAGCCAATCTTGTGTGCAAACCAAAGCTTCGACCATGAGA
*
30746605 GGCGTTAGAGAACTTCTAAAACTATCGAGAACACCTCCACCCGTGCTAAATGCACTTGTCGAAAC
326 GGAGTTAGAGAACTTCTAAAACTATCGAGAACACCTCCACCCGTGCTAAATGCACTTGTCGAAAC
30746670 CATTTTTTTGAAAAAGAAAAAAAAAGAGGATCGACTTGTAAAAACGAAAAAGGGAGTCACCACCG
391 CATTTTTTTGAAAAAGAAAAAAAAAGAGGATCGACTTGTAAAAACGAAAAAGGGAGTCACCACCG
30746735 ATCTTTTATTAAGGTGTGATCGGTTCACCATTAAAAATA
456 ATCTTTTATTAAGGTGTGATCGGTTCACCATTAAAAATA
30746774 AA
1 AA
30746776 TTTTAGGTTT
Statistics
Matches: 495, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
494 495 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (494 bp):
AACGAGTTAGTTAACTAATAATTTTTTTTTGCAAAAATAAATTAAATAAACATTTAACTTTATAA
ACTAATGCTAAGTATGTTACCTTCTTGATCTTCGGGTATTTTGGATAAGTCTAGCAAATTTAAAA
ACAAAAGTGTTAGTTAAATTATGGGAATGCTTACTATTACTAATATAAAGAATACAAAAGCTTAT
TTTATAAATTAAAATTTATATATTACCATCTTCCATTGTTTGAAGTTCATCAAAATAATCTTCAA
GATTGATGGCATCATTAGATTTCCGAAGCCAATCTTGTGTGCAAACCAAAGCTTCGACCATGAGA
GGAGTTAGAGAACTTCTAAAACTATCGAGAACACCTCCACCCGTGCTAAATGCACTTGTCGAAAC
CATTTTTTTGAAAAAGAAAAAAAAAGAGGATCGACTTGTAAAAACGAAAAAGGGAGTCACCACCG
ATCTTTTATTAAGGTGTGATCGGTTCACCATTAAAAATA
Found at i:30758342 original size:24 final size:23
Alignment explanation
Indices: 30758315--30758376 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 23
30758305 AATGATGATG
30758315 GAAAAAAGGAAAAGAAAAAGAAAA
1 GAAAAAAGGAAAAGAAAAAG-AAA
*
30758339 GAAAAAAGAAAAAGAAAAAGAAA
1 GAAAAAAGGAAAAGAAAAAGAAA
*
30758362 GAAGAAGAGGAAAAG
1 GAA-AAAAGGAAAAG
30758377 GAGAGGTCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 6 0.18
24 28 0.82
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (23 bp):
GAAAAAAGGAAAAGAAAAAGAAA
Found at i:30758375 original size:18 final size:17
Alignment explanation
Indices: 30758319--30758376 Score: 61
Period size: 16 Copynumber: 3.6 Consensus size: 17
30758309 ATGATGGAAA
30758319 AAAGGAAAAGAAA-AAG
1 AAAGGAAAAGAAAGAAG
*
30758335 AAAAG-AAA-AAAGAA-
1 AAAGGAAAAGAAAGAAG
*
30758349 AAAGAAAAAGAAAGAAG
1 AAAGGAAAAGAAAGAAG
30758366 AAGAGGAAAAG
1 AA-AGGAAAAG
30758377 GAGAGGTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 6 0.18
15 8 0.24
16 10 0.30
17 2 0.06
18 7 0.21
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AAAGGAAAAGAAAGAAG
Done.